Query 012457
Match_columns 463
No_of_seqs 236 out of 475
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 02:50:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012457.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012457hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2580 Mitochondrial import i 100.0 7.2E-85 1.6E-89 664.2 25.4 386 26-450 41-437 (459)
2 TIGR00984 3a0801s03tim44 mitoc 100.0 7.8E-74 1.7E-78 585.8 26.3 341 54-450 1-366 (378)
3 PF04280 Tim44: Tim44-like dom 100.0 6.4E-28 1.4E-32 215.8 14.6 135 315-449 1-135 (147)
4 COG4395 Uncharacterized protei 99.8 1.9E-19 4.1E-24 178.5 10.8 136 314-449 132-267 (281)
5 KOG2580 Mitochondrial import i 98.2 2.4E-05 5.2E-10 82.2 13.2 259 47-354 67-368 (459)
6 PF07961 MBA1: MBA1-like prote 97.5 0.0012 2.7E-08 65.3 12.5 111 329-440 67-185 (235)
7 TIGR00984 3a0801s03tim44 mitoc 96.9 0.0043 9.4E-08 65.3 9.0 99 66-197 20-139 (378)
8 PF13355 DUF4101: Protein of u 90.9 3.1 6.7E-05 36.9 10.5 89 351-444 19-109 (117)
9 PF07464 ApoLp-III: Apolipopho 89.8 0.38 8.2E-06 45.1 3.9 28 49-76 43-71 (155)
10 PF12870 Lumazine_bd: Lumazine 76.7 4.3 9.3E-05 33.5 4.4 29 339-367 10-38 (111)
11 PRK01919 tatB sec-independent 62.4 26 0.00056 33.6 6.7 19 47-65 37-55 (169)
12 PF11454 DUF3016: Protein of u 55.2 48 0.0011 30.8 7.1 80 363-448 29-123 (141)
13 COG1510 Predicted transcriptio 54.2 48 0.001 32.0 7.0 47 52-102 98-144 (177)
14 KOG3298 DNA-directed RNA polym 53.1 21 0.00045 34.1 4.3 69 378-456 41-113 (170)
15 PF12893 Lumazine_bd_2: Putati 49.9 83 0.0018 26.9 7.4 51 338-388 6-73 (116)
16 PF05957 DUF883: Bacterial pro 47.5 1.6E+02 0.0035 24.7 8.6 16 65-80 2-17 (94)
17 KOG2391 Vacuolar sorting prote 46.8 94 0.002 33.0 8.3 73 47-134 210-286 (365)
18 KOG4599 Putative mitochondrial 45.4 3.8 8.2E-05 43.2 -1.9 118 315-437 149-291 (379)
19 PRK09635 sigI RNA polymerase s 43.2 46 0.001 33.8 5.5 51 314-366 154-204 (290)
20 PF12883 DUF3828: Protein of u 42.3 72 0.0016 28.1 5.9 58 354-411 27-90 (120)
21 COG1422 Predicted membrane pro 41.0 36 0.00078 33.5 4.1 39 47-85 58-96 (201)
22 TIGR02957 SigX4 RNA polymerase 34.5 67 0.0015 32.1 5.1 50 314-365 144-193 (281)
23 PRK04654 sec-independent trans 32.2 1.6E+02 0.0034 29.4 7.0 27 49-76 43-69 (214)
24 PRK06568 F0F1 ATP synthase sub 29.3 4.9E+02 0.011 24.5 10.7 77 48-124 32-109 (154)
25 KOG2612 Predicted integral mem 29.0 28 0.00061 30.2 1.1 21 357-377 16-36 (103)
26 PHA01794 hypothetical protein 25.8 2.7E+02 0.0058 25.8 6.8 40 47-89 71-110 (134)
27 PF07754 DUF1610: Domain of un 25.8 34 0.00074 22.8 0.8 15 446-460 10-24 (24)
28 PF13026 DUF3887: Protein of u 25.4 3.6E+02 0.0078 23.7 7.4 82 329-414 2-97 (101)
29 CHL00118 atpG ATP synthase CF0 24.1 5.6E+02 0.012 23.5 10.1 28 53-80 55-82 (156)
30 PRK08241 RNA polymerase factor 24.1 92 0.002 31.7 4.0 54 312-365 187-243 (339)
31 PRK09636 RNA polymerase sigma 23.8 1.2E+02 0.0026 30.4 4.7 51 313-365 150-200 (293)
32 COG5420 Uncharacterized conser 22.2 3.8E+02 0.0083 22.1 6.3 66 57-134 2-67 (71)
33 PF11544 Spc42p: Spindle pole 22.0 1.8E+02 0.0038 24.6 4.5 34 60-93 4-37 (76)
34 PRK13454 F0F1 ATP synthase sub 21.4 7E+02 0.015 23.6 10.6 32 49-80 60-91 (181)
35 COG0711 AtpF F0F1-type ATP syn 21.3 6.7E+02 0.014 23.3 10.6 39 46-84 32-71 (161)
36 cd00781 ketosteroid_isomerase 21.3 93 0.002 26.1 2.9 29 338-366 5-33 (122)
37 KOG2542 Uncharacterized conser 20.8 1.7E+02 0.0036 32.0 5.1 72 296-369 390-467 (500)
No 1
>KOG2580 consensus Mitochondrial import inner membrane translocase, subunit TIM44 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.2e-85 Score=664.16 Aligned_cols=386 Identities=29% Similarity=0.498 Sum_probs=329.8
Q ss_pred cCCccccccccccCCC-CCCCccchHHHHHHHHHHhhhChhhHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHhhhh
Q 012457 26 QGSSTRLRLVSANGYS-SNRQFSVFKEFSKKIKGEAESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDG 104 (463)
Q Consensus 26 ~~~~~~~~~~~~~~~s-~~r~~~ff~~f~~~iK~E~~KnkElkeniK~~~eea~kl~~~~e~lk~r~~~~a~~~~k~v~~ 104 (463)
+++..|+++.+.++|| ++||+|||++|+||||+||+||||||+|||+|++++++|++| ++|| .||++|..+
T Consensus 41 ~~~~ar~~~~q~~~yss~~~r~s~ls~f~dn~r~E~~knkElqe~iK~lkd~a~~L~es-da~k-----kaR~k~~~~-- 112 (459)
T KOG2580|consen 41 TRLGARLPFSQTRGYSSPGRRRSFLSEFSDNVRAELDKNKELQESIKKLKDRAGELEES-DALK-----KARTKYETA-- 112 (459)
T ss_pred hcccccccccccccccCCCCCCchHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhhccc-hHHH-----HHHHHHHHH--
Confidence 4688899999999999 489999999999999999999999999999999999999998 5676 599999999
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCCCCcccccccccCcchhhhhhcccCCcchhhhccccccCC
Q 012457 105 VWMEAESTVKKVSASMKEKISAATEEVKGTFRTGSTDTSAKHDDDVRDGFKASSGEEKQKQTVSSDTAETFYGKLKSSIS 184 (463)
Q Consensus 105 ~~~esE~~~~k~s~~~k~k~~~~~e~vk~t~~~~k~~~s~~~~~~~~~~~~~~~~e~~~~~~~~~~~a~~~~~~f~~~~~ 184 (463)
|++++++|..++.+++++.|.|+... +++++|+... +.+++.+|..++|++++++-+++|++|.++..
T Consensus 113 -----e~~t~~~s~~~kk~~~e~~e~~k~~~----~ea~eS~~~k---~t~~~~~e~~kqA~~sae~vd~~~~kv~~T~~ 180 (459)
T KOG2580|consen 113 -----ESETQASSEVLKKKLGELKETVKLGA----EEAWESALGK---KTKEAVEEAQKQASGSAEEVDTFFEKVGQTAA 180 (459)
T ss_pred -----HhhhhhhhHHHHHHHHHHHHHHHHHH----HHHHhhhhhc---cchhhHHHHHHHhhcchhhhhHhhhhhhhhhh
Confidence 88899999999999999988888776 4777765333 88888899999998888766666665555555
Q ss_pred CccchHHHHHhHHHHHHHHHhhhhhhhcccccCCCCcccccCCCCCCCCCCCCCc-ccceEEecccchhHHH-HHHhhcC
Q 012457 185 SPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKHLEYTPSPSWTGEKST-RTDLVVTPSKKSMWSK-LKEKMQG 262 (463)
Q Consensus 185 ~~~~s~~~~kl~~~~~~~~~~~g~~~vk~el~~~~~~rkr~~~~~~~~~~~e~~~-~t~~v~~~~k~s~w~~-~k~~~~~ 262 (463)
+|.||+.+..+++ -++.++.|..+||+++...+++.+.....+++++++|+++ +++|| +|++|+||+ |++|+++
T Consensus 181 yk~vSe~~~~vkk--~~d~s~~g~~i~k~~~r~lr~r~~~~~~~~~~~~~~E~n~~a~~vv--~h~~skw~~kwe~fkek 256 (459)
T KOG2580|consen 181 YKAVSEVMETVKK--EIDSSRYGLDIVKERPRKLRKRTEFLGDTFPSEKVGEPNEEAEGVV--LHKDSKWYQKWEDFKEK 256 (459)
T ss_pred HHHHHHHHHhhcc--cchhhhhhhhchhhhhhhchhhhhhhccCCCcccccCCCcceeeEE--eccchHHHHHHHHHHhc
Confidence 5555555555553 3355555555555555543333334445556777776655 55544 699999999 9999999
Q ss_pred CccccccccccCccccccccchHHhhhhhcccccchhh-------hhhcccccccccChHHHHHHHHHHcCCCCChhHHH
Q 012457 263 YPVFKRITGISEPVVTKGQEIAEDVRERWETSDNPIVH-------KIQDMNETIFQETDAAASIKEIRRRDPSFSLPDFV 335 (463)
Q Consensus 263 ~p~~~~~~g~~~pv~~k~~e~~~d~r~~~eeSenP~V~-------ki~di~d~lf~ete~a~vl~eIkk~DPsFd~~~FL 335 (463)
|.++++|. +|+..||+||||+|. ++.++.+++|.+|+.++++++|+++||+||.++||
T Consensus 257 ~~~~~k~~---------------~lk~~ydeseN~~i~~~rdvtdki~~~~~g~fsktE~Sev~tei~~iDPsF~~~~Fl 321 (459)
T KOG2580|consen 257 NVVVRKFQ---------------ELKKKYDESENPSIRASRDVTDKITDVDGGLFSKTEMSEVLTEIKKIDPSFDKEDFL 321 (459)
T ss_pred ccchHHHH---------------HHHhhccccccHHHHHHHHHHHhhhhcccccchhhHHHHHHHHHHhcCCCCCcHHHH
Confidence 99999999 999999999999994 55556668999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHHcCCHHHHhhhcCHHHHHHHHHHHHHHHHCCCcccceEEeeccceEEEeEecCCccEEEEEEEEE
Q 012457 336 SEVQEAIRP-VLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMGSSPIIIVAFQTQ 414 (463)
Q Consensus 336 ~~areai~p-ILeAf~~GDle~LK~~cseavyn~faa~Ik~r~~~Gl~~d~kIL~I~~VeI~~ak~~e~~pvItVrF~aQ 414 (463)
+.|+++|+| ||+||.+||+++||+||++++|+++++++++++++|+.+|++||||++|||++++||+++|||||+|++|
T Consensus 322 r~~ee~IiPnVLeAyvkGD~evLK~wcsea~~~~~aa~~keykk~gv~~d~kILdI~~Vdia~~KmM~d~PVlIitFqaQ 401 (459)
T KOG2580|consen 322 RECEEYIIPNVLEAYVKGDLEVLKKWCSEAPFSQLAAPIKEYKKHGVYFDSKILDIRGVDIASGKMMEDGPVLIITFQAQ 401 (459)
T ss_pred HHHHHhhhHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHHHHHhcCeeecceeeeeccchhHHhhhhccCCEEEEEEeeE
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEcCCCCcccCCCCcceEEEecccccCCcccc
Q 012457 415 QIYCVRDKHGTITEGGKVNNTALLFPECGHLPLNEA 450 (463)
Q Consensus 415 qI~~vRDk~GeVVEGd~d~I~~v~Y~~~~~~~~~e~ 450 (463)
+|||+||.+|+|||||||+|++|+|.|+.-++-+|.
T Consensus 402 eI~~vRd~~GevveGd~d~i~~v~y~wvl~rd~~El 437 (459)
T KOG2580|consen 402 EIMCVRDAKGEVVEGDPDKILRVYYAWVLCRDQDEL 437 (459)
T ss_pred EEEEEEcCCCceecCCCCceeeEEeeeeeeccHhhc
Confidence 999999999999999999999999998866554443
No 2
>TIGR00984 3a0801s03tim44 mitochondrial import inner membrane, translocase subunit. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tim proteins.
Probab=100.00 E-value=7.8e-74 Score=585.83 Aligned_cols=341 Identities=21% Similarity=0.379 Sum_probs=293.2
Q ss_pred HHHHHHhhhChhhHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 012457 54 KKIKGEAESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASMKEKISAATEEVKG 133 (463)
Q Consensus 54 ~~iK~E~~KnkElkeniK~~~eea~kl~~~~e~lk~r~~~~a~~~~k~v~~~~~esE~~~~k~s~~~k~k~~~~~e~vk~ 133 (463)
||||+||+||+|||||||+|++++++|++| |+|| .||++|+.+ |+++.++|++++++|.+..+.|.+
T Consensus 1 d~~k~E~~kskE~~enik~l~~~~~~~~es-ea~k-----~ar~~y~~~-------~~~~~~~s~~~~~~l~~~~~~v~~ 67 (378)
T TIGR00984 1 DTFRDELQKSQELQESIKQLQDRSGKLNES-DALK-----KARKAYEKA-------ESGTLKSSEVVGKTLGKLGDTMKK 67 (378)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHhhhhhh-HHHH-----HHHHHHHHH-------hcccchhhHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999998 7998 799999999 777889999999999999999998
Q ss_pred hhcccccccCCCCCcccccccccCcchhhhhhcccCCcchhhhccccccCCCccchHHHHHhHHHHHHHHHhhhhhhhcc
Q 012457 134 TFRTGSTDTSAKHDDDVRDGFKASSGEEKQKQTVSSDTAETFYGKLKSSISSPKFTLAFQKLKEAKVVDLAKKGYDIVKD 213 (463)
Q Consensus 134 t~~~~k~~~s~~~~~~~~~~~~~~~~e~~~~~~~~~~~a~~~~~~f~~~~~~~~~s~~~~kl~~~~~~~~~~~g~~~vk~ 213 (463)
... ++.+|. .+ | + ..+....+|++.+ ++++++++.+|+|++|+++|++++.+|+
T Consensus 68 ~~~----~~~~s~-~~-k-~---~~~~~~~ta~~~~----------------~~~~~~~~~v~~T~~yk~vs~~~~~~k~ 121 (378)
T TIGR00984 68 MAH----KAWESE-LG-K-K---MKKAGAETAKTAA----------------EHVDKSAEPVRDTAVYKHVSQSMKDGKD 121 (378)
T ss_pred HHH----HHhhcH-HH-H-H---HHHHHHHHhhhhh----------------hhHHHhcccccccHHHHHHHHHHHhhhc
Confidence 874 344432 11 1 1 1222222322222 2489999999999999999999999999
Q ss_pred cccCC----------C-CcccccCCCCC-CCCC-CCCCcccceEEecccchhHHH-HHHhhcCCccccccccccCccccc
Q 012457 214 ELSGS----------P-SKRKHLEYTPS-PSWT-GEKSTRTDLVVTPSKKSMWSK-LKEKMQGYPVFKRITGISEPVVTK 279 (463)
Q Consensus 214 el~~~----------~-~~rkr~~~~~~-~~~~-~e~~~~t~~v~~~~k~s~w~~-~k~~~~~~p~~~~~~g~~~pv~~k 279 (463)
|++.. | .+|+|.+..+. .+.+ .+|+++|+++ +||+|+|++ |++|+++||++++|+
T Consensus 122 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~n~~a~~v~--~~k~s~~~~~w~~fk~~~~~~~~~~--------- 190 (378)
T TIGR00984 122 SSRYGFIADKEQRRRPRELTKRTDGRDFAKSRVVEANESVTDVV--LHSDSSWYSKVEDFKESNVVYRKIQ--------- 190 (378)
T ss_pred ccccccccchhhhhhHHHhhhhhcccccccccccccCCcccceE--EecccHHHHHHHHHHhhCHHHHHHH---------
Confidence 98873 1 12344333321 2334 4567789976 599999999 999999999999999
Q ss_pred cccchHHhhhhhcccccchhhhhhcccc-------cccccChHHHHHHHHHHcCCCCChhHHHHHHHHHHHH-HHHHHHc
Q 012457 280 GQEIAEDVRERWETSDNPIVHKIQDMNE-------TIFQETDAAASIKEIRRRDPSFSLPDFVSEVQEAIRP-VLSAYMK 351 (463)
Q Consensus 280 ~~e~~~d~r~~~eeSenP~V~ki~di~d-------~lf~ete~a~vl~eIkk~DPsFd~~~FL~~areai~p-ILeAf~~ 351 (463)
|||++||+||||+|+.+|+|+| +||++|+++.+|++|+++||+||+.+|+++|+.+|.| ||+||++
T Consensus 191 ------~lk~~~~eSeNp~i~~~r~itdkv~~~~~~lF~ete~a~~l~eIk~~DPsFd~~~Fl~gar~aI~p~ILeAf~k 264 (378)
T TIGR00984 191 ------ELKKKYDESENPLVRMMRGVTDKIGGVFSGMFSETEVSEVLTEFKKIDPTFDKEHFLRFLREYIVPEILEAYVK 264 (378)
T ss_pred ------HHHHHhhcccChhhhHhHHhhhhhhhhhhcccCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999987776655 5999999999999999999999999999999999655 9999999
Q ss_pred CCHHHHhhhcCHHHHHHHHHHHHHHHHCCCcccceEEeeccceEEEeEecC--CccEEEEEEEEEEEEEEEcCC-CCccc
Q 012457 352 GDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMG--SSPIIIVAFQTQQIYCVRDKH-GTITE 428 (463)
Q Consensus 352 GDle~LK~~cseavyn~faa~Ik~r~~~Gl~~d~kIL~I~~VeI~~ak~~e--~~pvItVrF~aQqI~~vRDk~-GeVVE 428 (463)
||+++||+||++++|++|+++|++|.++|+++|++||+|++++|++|++++ +.|+|+|+|++|||||+||++ |+||+
T Consensus 265 GD~e~LK~~lse~vy~~f~a~I~qr~~~G~~~d~~iL~I~~veI~~ak~~e~~~~pviiV~F~aQqI~~vRd~~tGeVVe 344 (378)
T TIGR00984 265 GDLEVLKSWCSEAPFSVYATVVKEYKKMGVSTKGRILDIRGVEIASGKLLEPGDIPVLIVTFRAQEINVTKNAKSGEVVA 344 (378)
T ss_pred CCHHHHHHhhCHHHHHHHHHHHHHHHHCCCeeeeEEeeecCeEEEEEEecCCCCeEEEEEEEEEEEEEEEEcCCCCceee
Confidence 999999999999999999999999999999999999999999999999986 469999999999999999987 99999
Q ss_pred CCCCcceEEEecccccCCcccc
Q 012457 429 GGKVNNTALLFPECGHLPLNEA 450 (463)
Q Consensus 429 Gd~d~I~~v~Y~~~~~~~~~e~ 450 (463)
|+|++|..+.|.|++-++++++
T Consensus 345 Gd~d~I~~v~yvWtF~Rd~~~~ 366 (378)
T TIGR00984 345 GDPDNIQRINYAWVFTRDVEEL 366 (378)
T ss_pred CCCCceeEEEEEEEEEEccccc
Confidence 9999999999999988777765
No 3
>PF04280 Tim44: Tim44-like domain; InterPro: IPR007379 Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane []. Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostatic interactions and by penetrating the polar head group region [].; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0006886 intracellular protein transport, 0005744 mitochondrial inner membrane presequence translocase complex; PDB: 2CW9_A 2FXT_A 3QK9_A.
Probab=99.95 E-value=6.4e-28 Score=215.78 Aligned_cols=135 Identities=33% Similarity=0.455 Sum_probs=122.4
Q ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHHcCCHHHHhhhcCHHHHHHHHHHHHHHHHCCCcccceEEeeccce
Q 012457 315 AAASIKEIRRRDPSFSLPDFVSEVQEAIRPVLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVE 394 (463)
Q Consensus 315 ~a~vl~eIkk~DPsFd~~~FL~~areai~pILeAf~~GDle~LK~~cseavyn~faa~Ik~r~~~Gl~~d~kIL~I~~Ve 394 (463)
.+.+++.|+++||+||...|+.+|+++|.+|++||.+||++.|++||++++|+.|..+|+++...|...+.++++|.+++
T Consensus 1 ~a~a~~~i~~~dp~Fd~~~F~~~ak~~f~~i~~A~~~~D~~~l~~~~t~~~~~~~~~~i~~~~~~g~~~~~~~v~i~~~~ 80 (147)
T PF04280_consen 1 LASAIKQIKQRDPGFDPAAFLEEAKEAFLPIQEAWAKGDLEALRPLLTEELYERLQAEIKARRSRGEVNDPEIVRIDNAE 80 (147)
T ss_dssp -HHHHCCHHHH-TT--HHHHHHHHHHTHHHHHHHHHHT-HHHHHHHB-HHHHHHHHHHHHHHHHTTEEEEEEEEEEEEEE
T ss_pred CchHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHhCHHHHHHHHHHHHHHHHcCCcccceEEEEEEEE
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeEecCCccEEEEEEEEEEEEEEEcCCCCcccCCCCcceEEEecccccCCccc
Q 012457 395 VRETKMMGSSPIIIVAFQTQQIYCVRDKHGTITEGGKVNNTALLFPECGHLPLNE 449 (463)
Q Consensus 395 I~~ak~~e~~pvItVrF~aQqI~~vRDk~GeVVEGd~d~I~~v~Y~~~~~~~~~e 449 (463)
|+++...++.|+|+|+|.++||+|++|++|+||+|+++++..+.|.|++-++++.
T Consensus 81 i~~~~~~~~~~~vtv~f~~~~~~~~~d~~G~ii~G~~~~~~~~~e~W~f~r~~~~ 135 (147)
T PF04280_consen 81 IVEAEQEGNFDQVTVRFRSQQIDYVDDKDGEIIEGDPDKIQEFTEYWTFERDLGS 135 (147)
T ss_dssp EEEEEEETTEEEEEEEEEEEEEEEEETTTCTCCCCSTTS-EEEEEEEEEEE--TT
T ss_pred eeeceeeCCEEEEEEEEEEEEEEEEECCCCcEeeCCCCCceEEEEEEEEEEeCCC
Confidence 9999999999999999999999999999999999999999999999997776543
No 4
>COG4395 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.80 E-value=1.9e-19 Score=178.46 Aligned_cols=136 Identities=23% Similarity=0.312 Sum_probs=130.8
Q ss_pred hHHHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHHcCCHHHHhhhcCHHHHHHHHHHHHHHHHCCCcccceEEeeccc
Q 012457 314 DAAASIKEIRRRDPSFSLPDFVSEVQEAIRPVLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEV 393 (463)
Q Consensus 314 e~a~vl~eIkk~DPsFd~~~FL~~areai~pILeAf~~GDle~LK~~cseavyn~faa~Ik~r~~~Gl~~d~kIL~I~~V 393 (463)
..+.+++.+...||+|++..||.+++.+|.+|++||.+||+++|+.++++++|+.|.+++.++...|.+.+++.|.|..+
T Consensus 132 ~~~ag~~~v~~~~~~f~p~~fl~~a~~a~~~Iq~a~~~~D~~tL~~L~tpev~~~~~~e~~e~~~~G~~~~ssfv~~~~~ 211 (281)
T COG4395 132 PLAAGARAVHNADPSFDPARFLNGARAAYEMIQQAYGAGDRKTLRELLTPEVMEYLEAEIAERESKGETNQSSFVTILQA 211 (281)
T ss_pred ccccchhhhhcCCcccchhHHHHHHHHHHHHHHHHhhhccHHHHHHhcCHHHHHHHHHHHhhhhhcCccccceecchhhh
Confidence 68889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeEecCCccEEEEEEEEEEEEEEEcCCCCcccCCCCcceEEEecccccCCccc
Q 012457 394 EVRETKMMGSSPIIIVAFQTQQIYCVRDKHGTITEGGKVNNTALLFPECGHLPLNE 449 (463)
Q Consensus 394 eI~~ak~~e~~pvItVrF~aQqI~~vRDk~GeVVEGd~d~I~~v~Y~~~~~~~~~e 449 (463)
+|.++++.++..++||+|..|.|.++||++|+||+|||+.+.++.--|.+-++.+.
T Consensus 212 di~~a~~~~~~~~atv~~~~~~i~~~~dr~G~vVdGd~~~~~e~~ElWTFtR~~~s 267 (281)
T COG4395 212 DIARADVEGDEDYATVAIRYQGIDVTRDRSGKVVDGDPDKPEEFAELWTFTRDTGS 267 (281)
T ss_pred hhhhccccCCceEEEEEEEeeeeeeeccccCceecCCCCcchhhhhheeeeccCCC
Confidence 99999999999999999999999999999999999999999999888887766653
No 5
>KOG2580 consensus Mitochondrial import inner membrane translocase, subunit TIM44 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.17 E-value=2.4e-05 Score=82.19 Aligned_cols=259 Identities=15% Similarity=0.140 Sum_probs=151.9
Q ss_pred cchHHHHHHHH--HHhhhC-hhhHHHHHHHHHHHHHHhhhHH-HHHH---------hhHHHH----HHHHHhhhhhh---
Q 012457 47 SVFKEFSKKIK--GEAESN-PEFKHSVKELKKKAEEIKGVKE-ELKE---------RTKQTT----EQLYKQVDGVW--- 106 (463)
Q Consensus 47 ~ff~~f~~~iK--~E~~Kn-kElkeniK~~~eea~kl~~~~e-~lk~---------r~~~~a----~~~~k~v~~~~--- 106 (463)
.|+.+|..-+. +|++.| ++||+.-.+| ++.+.|+.|++ +.++ =|+++. +.....+.++|
T Consensus 67 ~f~dn~r~E~~knkElqe~iK~lkd~a~~L-~esda~kkaR~k~~~~e~~t~~~s~~~kk~~~e~~e~~k~~~~ea~eS~ 145 (459)
T KOG2580|consen 67 EFSDNVRAELDKNKELQESIKKLKDRAGEL-EESDALKKARTKYETAESETQASSEVLKKKLGELKETVKLGAEEAWESA 145 (459)
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHHhhh-ccchHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44555544443 344444 4666666666 34455555555 3333 111222 22223457777
Q ss_pred -----hhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccccccCCCCCcccccccccCcchhhhhhcccCCcchhhhccccc
Q 012457 107 -----MEAESTVKKVSASMKEKISAATEEVKGTFRTGSTDTSAKHDDDVRDGFKASSGEEKQKQTVSSDTAETFYGKLKS 181 (463)
Q Consensus 107 -----~esE~~~~k~s~~~k~k~~~~~e~vk~t~~~~k~~~s~~~~~~~~~~~~~~~~e~~~~~~~~~~~a~~~~~~f~~ 181 (463)
.++.++++|.-..+.+.++.++++|++|..+.+- |++.... . .+...+.||.+..
T Consensus 146 ~~k~t~~~~~e~~kqA~~sae~vd~~~~kv~~T~~yk~v--Se~~~~v---------------k---k~~d~s~~g~~i~ 205 (459)
T KOG2580|consen 146 LGKKTKEAVEEAQKQASGSAEEVDTFFEKVGQTAAYKAV--SEVMETV---------------K---KEIDSSRYGLDIV 205 (459)
T ss_pred hhccchhhHHHHHHHhhcchhhhhHhhhhhhhhhhHHHH--HHHHHhh---------------c---ccchhhhhhhhch
Confidence 1222333332335677888888888888654433 3322111 1 2333677888888
Q ss_pred cCCCccchHHHHHhHHHHHHHHHhhhhhhhcccccCCCCcccccCCCC-CCCCCCCCCcccceEEecccchhHHHHHHhh
Q 012457 182 SISSPKFTLAFQKLKEAKVVDLAKKGYDIVKDELSGSPSKRKHLEYTP-SPSWTGEKSTRTDLVVTPSKKSMWSKLKEKM 260 (463)
Q Consensus 182 ~~~~~~~s~~~~kl~~~~~~~~~~~g~~~vk~el~~~~~~rkr~~~~~-~~~~~~e~~~~t~~v~~~~k~s~w~~~k~~~ 260 (463)
+ +..+++++..-+ +...+ +.+.+. +++++.--..-++ .....+|..|+++.
T Consensus 206 k-------~~~r~lr~r~~~-------------~~~~~----~~~~~~E~n~~a~~vv~h~~----skw~~kwe~fkek~ 257 (459)
T KOG2580|consen 206 K-------ERPRKLRKRTEF-------------LGDTF----PSEKVGEPNEEAEGVVLHKD----SKWYQKWEDFKEKN 257 (459)
T ss_pred h-------hhhhhchhhhhh-------------hccCC----CcccccCCCcceeeEEeccc----hHHHHHHHHHHhcc
Confidence 8 888888885211 12211 111221 2333321122333 36799999999999
Q ss_pred cCCccccccccccCccccccccchHHhhhhhcccccchhhhhhcc--------cccccccChHHHHHH-----HHHHcCC
Q 012457 261 QGYPVFKRITGISEPVVTKGQEIAEDVRERWETSDNPIVHKIQDM--------NETIFQETDAAASIK-----EIRRRDP 327 (463)
Q Consensus 261 ~~~p~~~~~~g~~~pv~~k~~e~~~d~r~~~eeSenP~V~ki~di--------~d~lf~ete~a~vl~-----eIkk~DP 327 (463)
.--|.++++-+..+|...+..++.+|++++|..++||+++++..- .|--|+..+..+-++ +|...--
T Consensus 258 ~~~~k~~~lk~~ydeseN~~i~~~rdvtdki~~~~~g~fsktE~Sev~tei~~iDPsF~~~~Flr~~ee~IiPnVLeAyv 337 (459)
T KOG2580|consen 258 VVVRKFQELKKKYDESENPSIRASRDVTDKITDVDGGLFSKTEMSEVLTEIKKIDPSFDKEDFLRECEEYIIPNVLEAYV 337 (459)
T ss_pred cchHHHHHHHhhccccccHHHHHHHHHHHhhhhcccccchhhHHHHHHHHHHhcCCCCCcHHHHHHHHHhhhHHHHHHHH
Confidence 999999999999999999999999999999999999999877653 233355555433222 2444445
Q ss_pred CCChhHHHHHHHHHHHHH----HHHHHcCCH
Q 012457 328 SFSLPDFVSEVQEAIRPV----LSAYMKGDV 354 (463)
Q Consensus 328 sFd~~~FL~~areai~pI----LeAf~~GDl 354 (463)
.+|++-....|-++-.-+ ..+|.+-++
T Consensus 338 kGD~evLK~wcsea~~~~~aa~~keykk~gv 368 (459)
T KOG2580|consen 338 KGDLEVLKKWCSEAPFSQLAAPIKEYKKHGV 368 (459)
T ss_pred hccHHHHHHHHhhhHHHHHHHHHHHHHhcCe
Confidence 678888888886665543 344544443
No 6
>PF07961 MBA1: MBA1-like protein; InterPro: IPR024621 Mba1 is an inner membrane protein that is part of the mitochondrial protein export machinery [, ]. It binds to the large subunit of mitochondrial ribosomes and cooperates with the C-terminal ribosome-binding domain of Oxa1, which is a central component of the insertion machinery of the inner membrane. In the absence of both Mba1 and the C terminus of Oxa1, mitochondrial translation products fail to be properly inserted into the inner membrane and serve as substrates of the matrix chaperone Hsp70 []. It is proposed that Mba1 functions as a ribosome receptor that cooperates with Oxa1 in the positioning of the ribosome exit site to the insertion machinery of the inner membrane [].
Probab=97.52 E-value=0.0012 Score=65.28 Aligned_cols=111 Identities=19% Similarity=0.229 Sum_probs=86.0
Q ss_pred CChhHHHHHHHHHHHHHHHHHHcCCHHHHhhhcCHHHHHHHHHHHHHHHHCCCcccceEEeec-cceEEEeEec--CC--
Q 012457 329 FSLPDFVSEVQEAIRPVLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVS-EVEVRETKMM--GS-- 403 (463)
Q Consensus 329 Fd~~~FL~~areai~pILeAf~~GDle~LK~~cseavyn~faa~Ik~r~~~Gl~~d~kIL~I~-~VeI~~ak~~--e~-- 403 (463)
+....|.+.|.+-|+.+-.||++||++.|+..|+..+|+.|.+-+.++-. +..++-+++.+. .-.|+..+.+ .+
T Consensus 67 ~~f~~wk~~AiE~yv~~NkaFA~~~~~~L~~~c~~~v~~sL~~R~~~~P~-~~kl~W~L~k~~~~PKvvs~~~~~~p~~~ 145 (235)
T PF07961_consen 67 PRFNEWKNKAIELYVQMNKAFAAGDLDKLRKICSSWVYESLAARIKQRPK-NSKLDWKLVKYNKNPKVVSFQAIPIPGGP 145 (235)
T ss_pred CchhHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHHHHHHHHhCCC-CCeeeEEEEEecCCCeEEEEeeeecCCCC
Confidence 44567999999999999999999999999999999999999999999874 457788888763 3445544433 22
Q ss_pred --ccEEEEEEEEEEEEEEEcCCCCcccCCCCc-ceEEEec
Q 012457 404 --SPIIIVAFQTQQIYCVRDKHGTITEGGKVN-NTALLFP 440 (463)
Q Consensus 404 --~pvItVrF~aQqI~~vRDk~GeVVEGd~d~-I~~v~Y~ 440 (463)
.-+++|+|.+.|-.+..|+.++.+++.+-+ +..+.|.
T Consensus 146 ~~~vQ~Vvk~~TkQ~li~~~k~~~~~~~~e~dvveyiV~~ 185 (235)
T PF07961_consen 146 LEIVQFVVKFDTKQRLIKVDKGSEKVEKKERDVVEYIVFQ 185 (235)
T ss_pred CeEEEEEEEEeeeEEEEEeccccccCCccccceeeeEEEE
Confidence 568899999999888888877777666533 3444453
No 7
>TIGR00984 3a0801s03tim44 mitochondrial import inner membrane, translocase subunit. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tim proteins.
Probab=96.86 E-value=0.0043 Score=65.29 Aligned_cols=99 Identities=17% Similarity=0.251 Sum_probs=59.0
Q ss_pred hHHHHHHHHHHHHHHhhhHH-HHHH-------------hhHHHHHHHHHhhhhhhhhhh---hhHHHHH---HHHHHHHH
Q 012457 66 FKHSVKELKKKAEEIKGVKE-ELKE-------------RTKQTTEQLYKQVDGVWMEAE---STVKKVS---ASMKEKIS 125 (463)
Q Consensus 66 lkeniK~~~eea~kl~~~~e-~lk~-------------r~~~~a~~~~k~v~~~~~esE---~~~~k~s---~~~k~k~~ 125 (463)
||+...+| ++.+-|+.|++ |.++ -+++++...-+.++.+| ++| ..+..++ ..+.++|+
T Consensus 20 l~~~~~~~-~esea~k~ar~~y~~~~~~~~~~s~~~~~~l~~~~~~v~~~~~~~~-~s~~~k~~~~~~~~ta~~~~~~~~ 97 (378)
T TIGR00984 20 LQDRSGKL-NESDALKKARKAYEKAESGTLKSSEVVGKTLGKLGDTMKKMAHKAW-ESELGKKMKKAGAETAKTAAEHVD 97 (378)
T ss_pred HHHHHhhh-hhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHh-hcHHHHHHHHHHHHHhhhhhhhHH
Confidence 55555555 34455555555 3332 34455666666788889 455 1111111 12358999
Q ss_pred HHHHhhhhhhcccccccCCCCCcccccccccCcchhhhhhcccCCc-chhhhccccccCCCccchHHHHHhHH
Q 012457 126 AATEEVKGTFRTGSTDTSAKHDDDVRDGFKASSGEEKQKQTVSSDT-AETFYGKLKSSISSPKFTLAFQKLKE 197 (463)
Q Consensus 126 ~~~e~vk~t~~~~k~~~s~~~~~~~~~~~~~~~~e~~~~~~~~~~~-a~~~~~~f~~~~~~~~~s~~~~kl~~ 197 (463)
++++||++|..|+- +|++. +++ +++.||+|..+ +.++++++
T Consensus 98 ~~~~~v~~T~~yk~--vs~~~----------------------~~~k~~~~~~~~~~~-------~~~r~~~~ 139 (378)
T TIGR00984 98 KSAEPVRDTAVYKH--VSQSM----------------------KDGKDSSRYGFIADK-------EQRRRPRE 139 (378)
T ss_pred HhcccccccHHHHH--HHHHH----------------------Hhhhcccccccccch-------hhhhhHHH
Confidence 99999999865332 23322 233 46779999998 88887776
No 8
>PF13355 DUF4101: Protein of unknown function (DUF4101)
Probab=90.91 E-value=3.1 Score=36.91 Aligned_cols=89 Identities=10% Similarity=0.185 Sum_probs=66.0
Q ss_pred cCCHHHHhhhcCHHHHHHHHHHHHHHHHCCCcccce-EEeeccceEEEeEecCCccEEEEEEEEEEEEEEEcCCCCcccC
Q 012457 351 KGDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNR-ILHVSEVEVRETKMMGSSPIIIVAFQTQQIYCVRDKHGTITEG 429 (463)
Q Consensus 351 ~GDle~LK~~cseavyn~faa~Ik~r~~~Gl~~d~k-IL~I~~VeI~~ak~~e~~pvItVrF~aQqI~~vRDk~GeVVEG 429 (463)
..+.+.|...+.+.+++.+.......+++|....-. -+.|..|++..-. ++.+.|.+ +-.+...+.+ +|++..+
T Consensus 19 ~~~~~~L~~vl~g~ll~~w~~~a~~~~~~g~y~~y~~~~~I~sv~~~~~~--~~ra~v~a--~v~E~~~l~~-~g~~~~~ 93 (117)
T PF13355_consen 19 PHDIDSLSEVLTGPLLSQWQDRAQWLKANGWYWEYDHKLKIDSVEVFSDS--PNRATVEA--TVTESAQLYD-NGQPDNN 93 (117)
T ss_pred CcchhHHHHHhhHHHHHHHHHHHHHHHHcCCeEEEeeeeEEEEEEEcCCC--CCeEEEEE--EEEEEEEEEe-CCccccC
Confidence 346778999999999999999999999999886544 5556565554332 34444443 4455566778 9999987
Q ss_pred -CCCcceEEEeccccc
Q 012457 430 -GKVNNTALLFPECGH 444 (463)
Q Consensus 430 -d~d~I~~v~Y~~~~~ 444 (463)
+......|.|.+.++
T Consensus 94 ~s~~~~~~vrY~L~r~ 109 (117)
T PF13355_consen 94 PSYDSTLRVRYELVRQ 109 (117)
T ss_pred CCCCCcEEEEEEEEEc
Confidence 778889999998754
No 9
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=89.80 E-value=0.38 Score=45.12 Aligned_cols=28 Identities=32% Similarity=0.566 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHhhh-ChhhHHHHHHHHHH
Q 012457 49 FKEFSKKIKGEAES-NPEFKHSVKELKKK 76 (463)
Q Consensus 49 f~~f~~~iK~E~~K-nkElkeniK~~~ee 76 (463)
++.++.+|.+|+.+ |+++.+-++.|+..
T Consensus 43 l~~~~~~l~eeik~~n~~~~e~l~~~~~k 71 (155)
T PF07464_consen 43 LQNVSSSLQEEIKDANPEAEEALKQLKTK 71 (155)
T ss_dssp HHHHHHHHHHHHTT-SSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcChhHHHHHHHHHHH
Confidence 78899999999999 99999999998877
No 10
>PF12870 Lumazine_bd: Lumazine-binding domain; InterPro: IPR024267 This entry represents a lumazine-binding domain found in a family of putative lipoproteins from bacteria. Lumazine is a fluorescent accessory protein having 6,7-dimethyl-8-(1'-D-ribityl) lumazine (DMRL) as its authentic chromophore; it modulates the emission of bacterial luciferase to shorter wavelengths with increasing luminous strength.; PDB: 3K7C_C.
Probab=76.70 E-value=4.3 Score=33.46 Aligned_cols=29 Identities=34% Similarity=0.516 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHcCCHHHHhhhcCHHHHH
Q 012457 339 QEAIRPVLSAYMKGDVETLKKYCSPEVIE 367 (463)
Q Consensus 339 reai~pILeAf~~GDle~LK~~cseavyn 367 (463)
+++..-.+.|+..||.+....+|++..-.
T Consensus 10 ~~~v~~f~~al~~gd~~~a~~~~~~~~~~ 38 (111)
T PF12870_consen 10 EEVVKNFFDALKNGDYEKAYAYLSPESRE 38 (111)
T ss_dssp HHHHHHHHHHHCTT-HHHHHHTB--TT--
T ss_pred HHHHHHHHHHHHcCCHHHHHHhhCccccc
Confidence 44555578999999999999999998884
No 11
>PRK01919 tatB sec-independent translocase; Provisional
Probab=62.37 E-value=26 Score=33.57 Aligned_cols=19 Identities=16% Similarity=0.265 Sum_probs=11.9
Q ss_pred cchHHHHHHHHHHhhhChh
Q 012457 47 SVFKEFSKKIKGEAESNPE 65 (463)
Q Consensus 47 ~ff~~f~~~iK~E~~KnkE 65 (463)
|-|..+++++|+|++.--+
T Consensus 37 ~k~Rr~~~d~K~ev~~E~e 55 (169)
T PRK01919 37 GRAQRYINDVKAEVSREIE 55 (169)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4466677777777764433
No 12
>PF11454 DUF3016: Protein of unknown function (DUF3016); InterPro: IPR021557 This is a bacterial family of uncharacterised proteins.
Probab=55.22 E-value=48 Score=30.81 Aligned_cols=80 Identities=14% Similarity=0.220 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHH----CCCcccceEEeecc---ceE------EEeEecCC--ccEEEEEEEEEEEEEEEcCCCCcc
Q 012457 363 PEVIERCKAEHTAYQS----HGIFFDNRILHVSE---VEV------RETKMMGS--SPIIIVAFQTQQIYCVRDKHGTIT 427 (463)
Q Consensus 363 eavyn~faa~Ik~r~~----~Gl~~d~kIL~I~~---VeI------~~ak~~e~--~pvItVrF~aQqI~~vRDk~GeVV 427 (463)
+.+++.|...+....+ .|.+++..|.||+= ++= -+.+++.+ -|.|.++| .++|.+|.||
T Consensus 29 ~~~~~~L~~~~~~la~~~Lp~gq~L~v~VtDvDLAG~~~P~~~~~~~dvRvvkdi~pPRI~l~Y------~L~d~~G~vi 102 (141)
T PF11454_consen 29 ERVFAQLTKHFQKLAAKYLPPGQTLEVTVTDVDLAGDVEPFWGSGANDVRVVKDIYPPRIELSY------TLTDADGKVI 102 (141)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCEEEEEEEecccCcccccCcCCCCCcEEEEccCCCCcEEEEE------EEECCCCcEE
Confidence 4455556655554444 47788888877742 111 12334433 57888777 4778999998
Q ss_pred cCCCCcceEEEecccccCCcc
Q 012457 428 EGGKVNNTALLFPECGHLPLN 448 (463)
Q Consensus 428 EGd~d~I~~v~Y~~~~~~~~~ 448 (463)
.-...++..+.|-|...+..+
T Consensus 103 ~~g~e~L~Dm~fl~~~~~~~~ 123 (141)
T PF11454_consen 103 KQGEEKLKDMGFLMRPRRRRS 123 (141)
T ss_pred EecceEEecchhhcCCCCCCC
Confidence 777789999999766554433
No 13
>COG1510 Predicted transcriptional regulators [Transcription]
Probab=54.19 E-value=48 Score=32.02 Aligned_cols=47 Identities=28% Similarity=0.376 Sum_probs=35.2
Q ss_pred HHHHHHHHhhhChhhHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHhh
Q 012457 52 FSKKIKGEAESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQV 102 (463)
Q Consensus 52 f~~~iK~E~~KnkElkeniK~~~eea~kl~~~~e~lk~r~~~~a~~~~k~v 102 (463)
|-++++.|+++|+| .++++.++.....+. ++|..|+++.+.++....
T Consensus 98 f~ek~~ReId~t~e---~l~k~~~e~~~~~~~-~~~~~~~ke~~~~l~~~l 144 (177)
T COG1510 98 FEEKWKREIDPTKE---ALKKLLEELNEDLDD-RDLTERIKEIKSKLERLL 144 (177)
T ss_pred HHHHHHHHhhhHHH---HHHHHHHHccccccc-hhhhHHHHHHHHHHHHHH
Confidence 44788999999987 588898888777774 478777776666666544
No 14
>KOG3298 consensus DNA-directed RNA polymerase subunit E' [Transcription]
Probab=53.05 E-value=21 Score=34.14 Aligned_cols=69 Identities=14% Similarity=0.128 Sum_probs=49.3
Q ss_pred HCCCcccceEEeeccceEEEeEecCC--ccEEEEEEEEEEEEEEEcCCCCcccCCCCcceEEEe--cccccCCccccccc
Q 012457 378 SHGIFFDNRILHVSEVEVRETKMMGS--SPIIIVAFQTQQIYCVRDKHGTITEGGKVNNTALLF--PECGHLPLNEACGS 453 (463)
Q Consensus 378 ~~Gl~~d~kIL~I~~VeI~~ak~~e~--~pvItVrF~aQqI~~vRDk~GeVVEGd~d~I~~v~Y--~~~~~~~~~e~~~~ 453 (463)
+.|.. .-+++|+++. .+++.+. ...+.|.|.+- |.|--.|+||+|. +..|.. .++.-=||+=|+++
T Consensus 41 ~~Gyv--i~vt~ld~Ig--~g~I~~~~G~v~FpVky~av---~FkpfKGEVvdgv---V~~Vnk~G~F~~~GPl~~f~ss 110 (170)
T KOG3298|consen 41 KYGYV--IAVTTLDNIG--EGRIRPGTGFVTFPVKYKAV---TFKPFKGEVVDGV---VTKVNKMGVFARSGPLEVFYSS 110 (170)
T ss_pred cccEE--EEEEEhhhcc--CCccccCCceEEEEEEEEEE---EEeecCCcEEEEE---EEEEeeeeEEEeccceEeeeec
Confidence 34544 5566667766 6666643 67888999885 6777899999997 444544 45566799999999
Q ss_pred CCC
Q 012457 454 HCL 456 (463)
Q Consensus 454 ~~~ 456 (463)
||-
T Consensus 111 hl~ 113 (170)
T KOG3298|consen 111 HLK 113 (170)
T ss_pred ccC
Confidence 984
No 15
>PF12893 Lumazine_bd_2: Putative lumazine-binding; PDB: 3BLZ_C 3DUK_F 3FKA_C.
Probab=49.86 E-value=83 Score=26.89 Aligned_cols=51 Identities=22% Similarity=0.346 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHhhhcCHHH--------------HHHHHHHHHHH---HHCCCcccceEE
Q 012457 338 VQEAIRPVLSAYMKGDVETLKKYCSPEV--------------IERCKAEHTAY---QSHGIFFDNRIL 388 (463)
Q Consensus 338 areai~pILeAf~~GDle~LK~~cseav--------------yn~faa~Ik~r---~~~Gl~~d~kIL 388 (463)
.+..+..-.+++..||.+.|+..++|++ .+.|.+.++.+ ...+...+.+|+
T Consensus 6 I~~~v~~Y~dg~~~gD~~~l~~~f~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~ 73 (116)
T PF12893_consen 6 IEATVQDYFDGLYNGDSEKLRSAFHPDARLQGVRKGKLRTMPIEEFIARVKSRVSPKPPGQERKESIL 73 (116)
T ss_dssp HHHHHHHHHHHHHHT-HHHHGGGEEEEEEEEEEETTEEEEEETHHHHHHHHHC---H-SSTT-EEEEE
T ss_pred HHHHHHHHHHHHHhcCHHHHHHhhCCCcEEEEEcCCceEEeCHHHHHHHHHhhccccCCCCCceeEEE
Confidence 4445555678888999999999998876 46777777776 344444444443
No 16
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=47.48 E-value=1.6e+02 Score=24.72 Aligned_cols=16 Identities=19% Similarity=0.557 Sum_probs=12.1
Q ss_pred hhHHHHHHHHHHHHHH
Q 012457 65 EFKHSVKELKKKAEEI 80 (463)
Q Consensus 65 ElkeniK~~~eea~kl 80 (463)
+|++.|.+|+++++.|
T Consensus 2 ~l~~~l~~l~~d~~~l 17 (94)
T PF05957_consen 2 DLKAELEQLRADLEDL 17 (94)
T ss_pred hHHHHHHHHHHHHHHH
Confidence 5677778888887777
No 17
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=46.78 E-value=94 Score=33.03 Aligned_cols=73 Identities=23% Similarity=0.218 Sum_probs=42.9
Q ss_pred cchHHHHHH----HHHHhhhChhhHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHH
Q 012457 47 SVFKEFSKK----IKGEAESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASMKE 122 (463)
Q Consensus 47 ~ff~~f~~~----iK~E~~KnkElkeniK~~~eea~kl~~~~e~lk~r~~~~a~~~~k~v~~~~~esE~~~~k~s~~~k~ 122 (463)
++.+-..+. .++||+.+.-+|++||.+.|+..+-.+==++.+.++.|+.-.+.+.+ ++++.
T Consensus 210 svisa~~eklR~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~ni---------------DIL~~ 274 (365)
T KOG2391|consen 210 SVISAVREKLRRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNI---------------DILKS 274 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhh---------------HHHHH
Confidence 344444444 46799999999999999988854332200122323334444443333 37777
Q ss_pred HHHHHHHhhhhh
Q 012457 123 KISAATEEVKGT 134 (463)
Q Consensus 123 k~~~~~e~vk~t 134 (463)
|+.++.++.+.+
T Consensus 275 k~~eal~~~~n~ 286 (365)
T KOG2391|consen 275 KVREALEKAENL 286 (365)
T ss_pred HHHHHHhhhccC
Confidence 777777766653
No 18
>KOG4599 consensus Putative mitochondrial/chloroplast ribosomal protein L45 [Translation, ribosomal structure and biogenesis]
Probab=45.36 E-value=3.8 Score=43.16 Aligned_cols=118 Identities=16% Similarity=0.204 Sum_probs=86.7
Q ss_pred HHHHHHHHHHcC--CCCChhHHHHHHHHHHHHHHHHHHcCCHHHHhhhcCH---------------HHHHHHHHHHHHHH
Q 012457 315 AAASIKEIRRRD--PSFSLPDFVSEVQEAIRPVLSAYMKGDVETLKKYCSP---------------EVIERCKAEHTAYQ 377 (463)
Q Consensus 315 ~a~vl~eIkk~D--PsFd~~~FL~~areai~pILeAf~~GDle~LK~~cse---------------avyn~faa~Ik~r~ 377 (463)
.-..++.|+..| -+|+.++|=..++..|+.+--+...-|...+..++++ .+|..+..- .
T Consensus 149 ~q~sir~i~~k~~~~~F~ik~f~~kakDifIqaH~~l~~~de~kays~l~e~~fvhl~~~~~t~~~~flp~m~~k----~ 224 (379)
T KOG4599|consen 149 SQMSIRRIRDKDEIENFEIKDFGAKAKDIFIQAHLCLNNSDEMKAYSFLTESEFVHLKCPSITNLLHFLPVMQEK----V 224 (379)
T ss_pred HHhhhhhhccCCcccceeccccchHhHHHHHHHHHHHhcChHHHHHHHhhccccccccCCCccchhhhccccchh----h
Confidence 345789999999 6999999999999999999999999999988888888 444444333 3
Q ss_pred HCCCcccceEEe-eccceEEEeEecC-------CccEEEEEEEEEEEEEEEcCCCCcccCCCCcceEE
Q 012457 378 SHGIFFDNRILH-VSEVEVRETKMMG-------SSPIIIVAFQTQQIYCVRDKHGTITEGGKVNNTAL 437 (463)
Q Consensus 378 ~~Gl~~d~kIL~-I~~VeI~~ak~~e-------~~pvItVrF~aQqI~~vRDk~GeVVEGd~d~I~~v 437 (463)
+.| .+...+|. +.-..++-++-.+ ..+.|+||++++|...++|.-|....|+++.-..|
T Consensus 225 K~~-~vR~~~vs~leP~~vv~~rc~d~~~~s~n~~aqitvRkh~~q~Lavydrfg~lm~g~E~i~KDv 291 (379)
T KOG4599|consen 225 KKG-TVRWSFVSVLEPSRVVYVRCDDDNDKSGNFIAQITVRKHTRQCLAVYDRFGRLMFGSEDIKKDV 291 (379)
T ss_pred ccC-ceeEEEEeecccceeEEEEecCCcccccccceeeehHHHHHHHHHHHHHHHHHhccCcccccch
Confidence 334 33444444 2333344444332 16899999999999999999999999987555444
No 19
>PRK09635 sigI RNA polymerase sigma factor SigI; Provisional
Probab=43.19 E-value=46 Score=33.78 Aligned_cols=51 Identities=22% Similarity=0.261 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHHcCCHHHHhhhcCHHHH
Q 012457 314 DAAASIKEIRRRDPSFSLPDFVSEVQEAIRPVLSAYMKGDVETLKKYCSPEVI 366 (463)
Q Consensus 314 e~a~vl~eIkk~DPsFd~~~FL~~areai~pILeAf~~GDle~LK~~cseavy 366 (463)
-...+.+.|+...|.|... -..-+......+.|+..||++.|..+|++++-
T Consensus 154 ~l~RAr~~Lr~~~~~~~~~--~~~~~~~~~~f~~a~~~gd~~~l~~ll~~d~~ 204 (290)
T PRK09635 154 LAHRARRKINESRIAASVE--PAQHRVVTRAFIEACSNGDLDTLLEVLDPGVA 204 (290)
T ss_pred HHHHHHHHHHhhCCCCCCC--hHHHHHHHHHHHHHHHhCCHHHHHHHhhhhhc
Confidence 3467888888888877643 22334455559999999999999999999883
No 20
>PF12883 DUF3828: Protein of unknown function (DUF3828); InterPro: IPR024289 This domain currently has no known function.; PDB: 3KZT_A.
Probab=42.26 E-value=72 Score=28.15 Aligned_cols=58 Identities=24% Similarity=0.303 Sum_probs=37.9
Q ss_pred HHHHhhhcCHHHHHHHHHHHHH-HHHCCCcccceEEe-----eccceEEEeEecCCccEEEEEE
Q 012457 354 VETLKKYCSPEVIERCKAEHTA-YQSHGIFFDNRILH-----VSEVEVRETKMMGSSPIIIVAF 411 (463)
Q Consensus 354 le~LK~~cseavyn~faa~Ik~-r~~~Gl~~d~kIL~-----I~~VeI~~ak~~e~~pvItVrF 411 (463)
.+.++++|+.++.+.+....+. ..-.+.-+=.+--| +.++.|..+++.++.+.+.|+|
T Consensus 27 ~~~~~~yvsk~~~~~l~~~~~~~~~~~D~D~f~~aQD~~~~w~~~i~v~~~~~~~~~a~v~v~~ 90 (120)
T PF12883_consen 27 EELMERYVSKETIAKLKKIYQLEQGILDFDYFIKAQDYDPDWVSNIKVGPAKMDGDCAVVYVTF 90 (120)
T ss_dssp HHHHHHHB-HHHHHHHHHHH----HHSSSBTTTTBSS--TTSGGG-EEEEEETTEEEEEEEETT
T ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCcCCCCceecccCChhhHhhEEEeeccccCCeEEEEEEE
Confidence 3368999999999999987763 22222222222222 5788999988888899999998
No 21
>COG1422 Predicted membrane protein [Function unknown]
Probab=40.95 E-value=36 Score=33.47 Aligned_cols=39 Identities=18% Similarity=0.285 Sum_probs=32.0
Q ss_pred cchHHHHHHHHHHhhhChhhHHHHHHHHHHHHHHhhhHH
Q 012457 47 SVFKEFSKKIKGEAESNPEFKHSVKELKKKAEEIKGVKE 85 (463)
Q Consensus 47 ~ff~~f~~~iK~E~~KnkElkeniK~~~eea~kl~~~~e 85 (463)
|++..+...+==-.+|=+++|+-+|+|+++-++..++.+
T Consensus 58 gl~~~i~~~~liD~ekm~~~qk~m~efq~e~~eA~~~~d 96 (201)
T COG1422 58 GLYITILQKLLIDQEKMKELQKMMKEFQKEFREAQESGD 96 (201)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 778888888777788899999999999999877766543
No 22
>TIGR02957 SigX4 RNA polymerase sigma-70 factor, TIGR02957 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building and bidirectional best hits, to represent a conserved family. This family is found in a limited number of bacterial lineages. This family includes apparent paralogous expansion in Streptomyces coelicolor A3(2), and multiple copies in Mycobacterium smegmatis MC2, Streptomyces avermitilis MA-4680 and Nocardia farcinica IFM10152.
Probab=34.53 E-value=67 Score=32.12 Aligned_cols=50 Identities=18% Similarity=0.353 Sum_probs=38.2
Q ss_pred hHHHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHHcCCHHHHhhhcCHHH
Q 012457 314 DAAASIKEIRRRDPSFSLPDFVSEVQEAIRPVLSAYMKGDVETLKKYCSPEV 365 (463)
Q Consensus 314 e~a~vl~eIkk~DPsFd~~~FL~~areai~pILeAf~~GDle~LK~~cseav 365 (463)
-...+.+.|+..-|.|.... ..-+......++|+..||++.|..+|++++
T Consensus 144 ~l~RAr~~Lr~~~~~~~~~~--~~~~~~~~~f~~a~~~gD~~~l~~lL~~dv 193 (281)
T TIGR02957 144 LVSRARRHLDARRPRFEVSR--EESRQLLERFVEAAQTGDLDGLLELLAEDV 193 (281)
T ss_pred HHHHHHHHHHhhCCCCCCCh--HHHHHHHHHHHHHHHhCCHHHHHHHHhhce
Confidence 35678888888777765432 234455556999999999999999999987
No 23
>PRK04654 sec-independent translocase; Provisional
Probab=32.21 E-value=1.6e+02 Score=29.36 Aligned_cols=27 Identities=19% Similarity=0.446 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHhhhChhhHHHHHHHHHH
Q 012457 49 FKEFSKKIKGEAESNPEFKHSVKELKKK 76 (463)
Q Consensus 49 f~~f~~~iK~E~~KnkElkeniK~~~ee 76 (463)
|+.+.+.|.+|++ ..||++.+++++..
T Consensus 43 ~~~vk~El~~El~-~~ELrk~l~~~~~~ 69 (214)
T PRK04654 43 WDSVKQELERELE-AEELKRSLQDVQAS 69 (214)
T ss_pred HHHHHHHHHHhhh-HHHHHHHHHHHHHH
Confidence 5555555555543 35666665555443
No 24
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=29.31 E-value=4.9e+02 Score=24.49 Aligned_cols=77 Identities=10% Similarity=0.063 Sum_probs=40.7
Q ss_pred chHHHHHHHHHHhhhChhhHHHHHHHHHHHHHH-hhhHHHHHHhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 012457 48 VFKEFSKKIKGEAESNPEFKHSVKELKKKAEEI-KGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASMKEKI 124 (463)
Q Consensus 48 ff~~f~~~iK~E~~KnkElkeniK~~~eea~kl-~~~~e~lk~r~~~~a~~~~k~v~~~~~esE~~~~k~s~~~k~k~ 124 (463)
++.+=-+.|.++++.=...++...++.++.++. ++++.....-+.++-++.-+..+++-.+++.++.+.-+..+..|
T Consensus 32 ~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA~~Ii~~A~~~a~~~~~ea~~eA~~ea~r~~~~A~~~I 109 (154)
T PRK06568 32 SLDAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLETLRSQMIEESNEVTKKIIQEKTKEIEEFLEHKKSDAIQLI 109 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445678888888888888888887777665 44332222122223333333444444444444444444433333
No 25
>KOG2612 consensus Predicted integral membrane protein [Function unknown]
Probab=28.97 E-value=28 Score=30.17 Aligned_cols=21 Identities=14% Similarity=0.194 Sum_probs=11.7
Q ss_pred HhhhcCHHHHHHHHHHHHHHH
Q 012457 357 LKKYCSPEVIERCKAEHTAYQ 377 (463)
Q Consensus 357 LK~~cseavyn~faa~Ik~r~ 377 (463)
|..+++.++-..|+.....++
T Consensus 16 lnnLL~~~iqdI~a~e~~~qk 36 (103)
T KOG2612|consen 16 LNNLLDDAIQDIFAEEHHLQK 36 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666665555544
No 26
>PHA01794 hypothetical protein
Probab=25.82 E-value=2.7e+02 Score=25.79 Aligned_cols=40 Identities=13% Similarity=0.176 Sum_probs=31.1
Q ss_pred cchHHHHHHHHHHhhhChhhHHHHHHHHHHHHHHhhhHHHHHH
Q 012457 47 SVFKEFSKKIKGEAESNPEFKHSVKELKKKAEEIKGVKEELKE 89 (463)
Q Consensus 47 ~ff~~f~~~iK~E~~KnkElkeniK~~~eea~kl~~~~e~lk~ 89 (463)
|=++.+++.|++||..+-=|+.-|++.=+- ++.+-+||++
T Consensus 71 ~~~e~lF~eleqEm~~SGFF~~ki~kyien---~EK~~~yl~~ 110 (134)
T PHA01794 71 GTTEGLFAELEKEMVDSGFFRAKIKKYIEN---MEKSARYLKA 110 (134)
T ss_pred chHHHHHHHHHHHHHHhhHHHHHHHHHHHH---HHHHHHHhhc
Confidence 457888899999999999988888877655 5555568875
No 27
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=25.79 E-value=34 Score=22.76 Aligned_cols=15 Identities=27% Similarity=0.397 Sum_probs=10.9
Q ss_pred CcccccccCCCCCcc
Q 012457 446 PLNEACGSHCLLCQP 460 (463)
Q Consensus 446 ~~~e~~~~~~~~~~~ 460 (463)
|..-.+.-.|||||.
T Consensus 10 ~r~~~v~f~CPnCG~ 24 (24)
T PF07754_consen 10 PREQAVPFPCPNCGF 24 (24)
T ss_pred CcccCceEeCCCCCC
Confidence 344477788999983
No 28
>PF13026 DUF3887: Protein of unknown function (DUF3887)
Probab=25.41 E-value=3.6e+02 Score=23.73 Aligned_cols=82 Identities=13% Similarity=0.184 Sum_probs=50.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHHcCCHHHHhhhcCHHHHHHHH-HHHHH-----HHHCCCcc---c---ceEEeec--cce
Q 012457 329 FSLPDFVSEVQEAIRPVLSAYMKGDVETLKKYCSPEVIERCK-AEHTA-----YQSHGIFF---D---NRILHVS--EVE 394 (463)
Q Consensus 329 Fd~~~FL~~areai~pILeAf~~GDle~LK~~cseavyn~fa-a~Ik~-----r~~~Gl~~---d---~kIL~I~--~Ve 394 (463)
|+.+.....|++.| +-+..||.+.+..-|++.+=+.|. ..+++ ..+.|.+- . +.+=+++ ...
T Consensus 2 f~~Ekv~~~Aeevi----~~~N~~dy~~v~~~~d~~mk~aL~~e~~~~~~~~~l~k~G~f~~f~ki~~~~~~d~~~~~~v 77 (101)
T PF13026_consen 2 FDEEKVKQKAEEVI----DLLNEKDYDKVHEKYDEKMKNALTAEELKEKWGPVLEKAGAFESFEKITVSMIEDKDGYATV 77 (101)
T ss_pred CcHHHHHHHHHHHH----HHHhHhhHHHHHHHHhHHHHHhcCHHHHHHHHHHHHHhccccchhhhhhhhcccccCcceEE
Confidence 77778888887766 445568888888888888777776 33332 34445221 1 1121222 234
Q ss_pred EEEeEecCCccEEEEEEEEE
Q 012457 395 VRETKMMGSSPIIIVAFQTQ 414 (463)
Q Consensus 395 I~~ak~~e~~pvItVrF~aQ 414 (463)
|.-++..++...+||+|.-+
T Consensus 78 V~vakYen~~~~ftitF~~e 97 (101)
T PF13026_consen 78 VQVAKYENGKHQFTITFDNE 97 (101)
T ss_pred EEEecccCccEEEEEEeCcc
Confidence 55667777888888888543
No 29
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=24.12 E-value=5.6e+02 Score=23.47 Aligned_cols=28 Identities=21% Similarity=0.241 Sum_probs=16.9
Q ss_pred HHHHHHHhhhChhhHHHHHHHHHHHHHH
Q 012457 53 SKKIKGEAESNPEFKHSVKELKKKAEEI 80 (463)
Q Consensus 53 ~~~iK~E~~KnkElkeniK~~~eea~kl 80 (463)
-+.|.+.++.-.+.++...++.++.++.
T Consensus 55 ~~~I~~~l~~Ae~~~~ea~~~~~e~e~~ 82 (156)
T CHL00118 55 KEYIRKNLTKASEILAKANELTKQYEQE 82 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666665544
No 30
>PRK08241 RNA polymerase factor sigma-70; Validated
Probab=24.08 E-value=92 Score=31.67 Aligned_cols=54 Identities=15% Similarity=0.161 Sum_probs=40.1
Q ss_pred cChHHHHHHHHHHcCCCCC---hhHHHHHHHHHHHHHHHHHHcCCHHHHhhhcCHHH
Q 012457 312 ETDAAASIKEIRRRDPSFS---LPDFVSEVQEAIRPVLSAYMKGDVETLKKYCSPEV 365 (463)
Q Consensus 312 ete~a~vl~eIkk~DPsFd---~~~FL~~areai~pILeAf~~GDle~LK~~cseav 365 (463)
.+-...+.+.|++.-|.+. ...+...-+..+...++||.+||++.|-.+++|++
T Consensus 187 k~~l~RAr~~Lr~~~~~~~~~~~~~~~~~~~~~v~~~~~A~~~gD~~~l~~lla~Dv 243 (339)
T PRK08241 187 NSALQRARATLAERGPSAADTLREPDDPEERALLARYVAAFEAYDVDALVALLTEDA 243 (339)
T ss_pred HHHHHHHHHHHhhcCCCcccccCCCCChHHHHHHHHHHHHHhcCCHHHHHHHhcCCE
Confidence 3446788889998656421 22355566666677889999999999999999976
No 31
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=23.77 E-value=1.2e+02 Score=30.39 Aligned_cols=51 Identities=25% Similarity=0.403 Sum_probs=37.8
Q ss_pred ChHHHHHHHHHHcCCCCChhHHHHHHHHHHHHHHHHHHcCCHHHHhhhcCHHH
Q 012457 313 TDAAASIKEIRRRDPSFSLPDFVSEVQEAIRPVLSAYMKGDVETLKKYCSPEV 365 (463)
Q Consensus 313 te~a~vl~eIkk~DPsFd~~~FL~~areai~pILeAf~~GDle~LK~~cseav 365 (463)
+-...+.+.|++.-|.+.. .....++.....+.||.+||.+.|-.+++|++
T Consensus 150 ~~l~RAr~~Lr~~~~~~~~--~~~~~~~~v~~f~~A~~~gD~~~l~~Lla~Dv 200 (293)
T PRK09636 150 QLASRARKHVRAARPRFPV--SDEEGAELVEAFFAALASGDLDALVALLAPDV 200 (293)
T ss_pred HHHHHHHHHHHhhCCCCCC--CchHHHHHHHHHHHHHHhCCHHHHHHHHhhCe
Confidence 3456788889888776532 22334555566899999999999999998876
No 32
>COG5420 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=22.16 E-value=3.8e+02 Score=22.09 Aligned_cols=66 Identities=26% Similarity=0.326 Sum_probs=43.7
Q ss_pred HHHhhhChhhHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhh
Q 012457 57 KGEAESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTEQLYKQVDGVWMEAESTVKKVSASMKEKISAATEEVKGT 134 (463)
Q Consensus 57 K~E~~KnkElkeniK~~~eea~kl~~~~e~lk~r~~~~a~~~~k~v~~~~~esE~~~~k~s~~~k~k~~~~~e~vk~t 134 (463)
+.||..=.|||+-|++|+-+|+..+- .|. .+..-+---|+|-+..+.|+=+++++ ++++..++.+.
T Consensus 2 q~~ms~l~eiqkKvrkLqsrAg~akm---~Lh--------DLAEgLP~~wtei~~VA~kt~~~yae-LD~~k~ELakl 67 (71)
T COG5420 2 QVEMSSLEEIQKKVRKLQSRAGQAKM---ELH--------DLAEGLPVKWTEIMAVAEKTFEAYAE-LDAAKRELAKL 67 (71)
T ss_pred chhHhhHHHHHHHHHHHHHHHHHHHh---hHH--------HHhccCCccHHHHHHHHHHHHHHHHH-HHHHHHHHHHh
Confidence 35677778999999999998876654 233 33333333577667778887766554 67777666654
No 33
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=22.02 E-value=1.8e+02 Score=24.62 Aligned_cols=34 Identities=12% Similarity=0.276 Sum_probs=26.5
Q ss_pred hhhChhhHHHHHHHHHHHHHHhhhHHHHHHhhHH
Q 012457 60 AESNPEFKHSVKELKKKAEEIKGVKEELKERTKQ 93 (463)
Q Consensus 60 ~~KnkElkeniK~~~eea~kl~~~~e~lk~r~~~ 93 (463)
++.|++|+.-+..-++|.++|+.--+.|+.++.+
T Consensus 4 i~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLiK 37 (76)
T PF11544_consen 4 IKQNKELKKKLNDKQEEIDRLNILVGSLRGKLIK 37 (76)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999999997766678765544
No 34
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=21.35 E-value=7e+02 Score=23.58 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHhhhChhhHHHHHHHHHHHHHH
Q 012457 49 FKEFSKKIKGEAESNPEFKHSVKELKKKAEEI 80 (463)
Q Consensus 49 f~~f~~~iK~E~~KnkElkeniK~~~eea~kl 80 (463)
+.+=-+.|.+.++.-.++++...+++++.++.
T Consensus 60 l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~ 91 (181)
T PRK13454 60 LAERQGTITNDLAAAEELKQKAVEAEKAYNKA 91 (181)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334456666666666666666666665544
No 35
>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]
Probab=21.34 E-value=6.7e+02 Score=23.31 Aligned_cols=39 Identities=18% Similarity=0.294 Sum_probs=26.5
Q ss_pred ccchHHHHHHHHHHhhhChhhHHHHHHHHHHHH-HHhhhH
Q 012457 46 FSVFKEFSKKIKGEAESNPEFKHSVKELKKKAE-EIKGVK 84 (463)
Q Consensus 46 ~~ff~~f~~~iK~E~~KnkElkeniK~~~eea~-kl~~~~ 84 (463)
.++|.+--+.|++++..-..+++.-.++.++.+ +|++++
T Consensus 32 ~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~l~~Ar 71 (161)
T COG0711 32 LKALDERQAKIADDLAEAERLKEEAQALLAEYEQELEEAR 71 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888899998888777766666554443 344443
No 36
>cd00781 ketosteroid_isomerase ketosteroid isomerase: Many biological reactions proceed by enzymatic cleavage of a C-H bond adjacent to carbonyl or a carboxyl group, leading to an enol or a enolate intermediate that is subsequently re-protonated at the same or an adjacent carbon. Ketosteroid isomerases are important members of this class of enzymes which are the most proficient of all enzymes known and have served as a paradigm for enzymatic enolizations since its discovery in 1954. This CD includes members of this class that calalyze the isomerization of various beta,gamma-unsaturated isomers at nearly a diffusion-controlled rate. These enzymes are widely distributed in bacteria.
Probab=21.27 E-value=93 Score=26.12 Aligned_cols=29 Identities=17% Similarity=0.269 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHhhhcCHHHH
Q 012457 338 VQEAIRPVLSAYMKGDVETLKKYCSPEVI 366 (463)
Q Consensus 338 areai~pILeAf~~GDle~LK~~cseavy 366 (463)
.+..+....+||.+||.+.|..++++++.
T Consensus 5 ~~~~v~~~~~a~~~~D~~~~~~l~aed~~ 33 (122)
T cd00781 5 MKAAVQRYVEAVNAGDPEGIVALFADDAT 33 (122)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHcCCCeE
Confidence 34445557899999999999999888765
No 37
>KOG2542 consensus Uncharacterized conserved protein (YdiU family) [Function unknown]
Probab=20.81 E-value=1.7e+02 Score=32.02 Aligned_cols=72 Identities=18% Similarity=0.250 Sum_probs=53.4
Q ss_pred cchhhhhhccc---ccccccChHHHHHHHHHHcCCCCChhHHHHHHHHHHHH-HHHHHHcCCHHHHhhhc--CHHHHHHH
Q 012457 296 NPIVHKIQDMN---ETIFQETDAAASIKEIRRRDPSFSLPDFVSEVQEAIRP-VLSAYMKGDVETLKKYC--SPEVIERC 369 (463)
Q Consensus 296 nP~V~ki~di~---d~lf~ete~a~vl~eIkk~DPsFd~~~FL~~areai~p-ILeAf~~GDle~LK~~c--seavyn~f 369 (463)
|-++.-++..+ +....+++.+......+++.|.|....++ .+++|-. ..+|...||...+|.+| .+.+|+.-
T Consensus 390 new~kw~rny~~ry~~~~~~~g~aar~~~ekkanm~fvnpkyV--Lrnyi~q~ai~aaeegDfSevkkv~kl~~~Pye~t 467 (500)
T KOG2542|consen 390 NEWAKWLRNYRARYDKDLEGAGDAARWQAEKKANMHFVNPKYV--LRNYIAQNAIEAAEEGDFSEVKKVLKLLETPYECT 467 (500)
T ss_pred hHHHHHHHHHHHHHhhhccCccchHHHHHHhhccccccChHHH--HHHHHHHHHHHHHhccCHHHHHHHHHHhcCCcccc
Confidence 44444444432 23467888899999999999999999987 5777777 78999999999999864 45555443
Done!