Query 012457
Match_columns 463
No_of_seqs 236 out of 475
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 09:49:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012457.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012457hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qk9_A Mitochondrial import in 100.0 1.5E-51 5.1E-56 396.4 13.0 185 251-450 7-200 (222)
2 2cw9_A Translocase of inner mi 100.0 3.3E-40 1.1E-44 310.7 16.3 163 287-449 3-173 (194)
3 4hyz_A Uncharacterized protein 87.4 2 6.9E-05 36.5 7.9 99 323-427 5-110 (114)
4 3ehc_A Snoal-like polyketide c 37.9 69 0.0024 25.9 6.3 27 339-365 6-32 (128)
5 3dmc_A NTF2-like protein; stru 31.6 13 0.00043 31.5 0.6 30 335-364 11-40 (134)
6 2gey_A ACLR protein; alpha+bet 31.3 1.4E+02 0.0048 25.1 7.4 27 338-364 6-32 (158)
7 3g0k_A Putative membrane prote 28.5 86 0.0029 26.8 5.6 27 339-365 30-57 (148)
8 3f40_A Uncharacterized NTF2-li 28.2 18 0.00063 29.7 1.1 27 339-365 9-35 (114)
9 3s84_A Apolipoprotein A-IV; fo 27.0 4.3E+02 0.015 25.4 11.1 16 86-101 70-85 (273)
10 2f86_B Hypothetical protein K1 25.1 21 0.00071 31.0 0.9 29 337-365 13-41 (143)
11 2i7u_A Four-alpha-helix bundle 24.0 97 0.0033 23.2 4.2 22 56-80 4-25 (62)
12 3us6_A Histidine-containing ph 21.3 35 0.0012 30.2 1.6 54 309-362 17-79 (153)
13 3he4_B Synzip5; heterodimeric 21.1 1.1E+02 0.0038 21.7 3.8 25 64-88 6-30 (46)
14 1gp8_A Protein (scaffolding pr 20.6 75 0.0026 22.6 2.8 24 337-360 8-32 (40)
15 2q6q_A Spindle POLE BODY compo 20.5 2.6E+02 0.0088 22.2 6.2 37 60-96 2-38 (74)
No 1
>3qk9_A Mitochondrial import inner membrane translocase S TIM44; mitochondrion, protein transport; 3.10A {Saccharomyces cerevisiae} PDB: 2fxt_A
Probab=100.00 E-value=1.5e-51 Score=396.37 Aligned_cols=185 Identities=25% Similarity=0.487 Sum_probs=149.0
Q ss_pred hhHHH-HHHhhcCCccccccccccCccccccccchHHhhhh-hcccccchhhhhhccccc---ccccChHHHHHHHHHHc
Q 012457 251 SMWSK-LKEKMQGYPVFKRITGISEPVVTKGQEIAEDVRER-WETSDNPIVHKIQDMNET---IFQETDAAASIKEIRRR 325 (463)
Q Consensus 251 s~w~~-~k~~~~~~p~~~~~~g~~~pv~~k~~e~~~d~r~~-~eeSenP~V~ki~di~d~---lf~ete~a~vl~eIkk~ 325 (463)
.+|++ |++|+++||++++|+ |||++ |||||||+|+++|+|+|+ ||++|+++++|++|+++
T Consensus 7 ~~~~~~w~~fk~~~~~~~~~~---------------~~k~~~~~es~np~i~~~r~itd~v~~~f~~te~a~~l~~Ik~~ 71 (222)
T 3qk9_A 7 ESFGKKVEDFKEKTVVGRSIQ---------------SLKNKLWDESENPLIVVMRKITNKVGGFFAETESSRVYSQFKLM 71 (222)
T ss_dssp --------------------C---------------HHHHHHHHHCCCHHHHHHHHHCC---------CCHHHHTTCC--
T ss_pred hHHHHHHHHHhhcCHHHHHHH---------------HHHhhhcccccCHHHHHHHHHHHhcccccCCCHHHHHHHHHHHh
Confidence 38999 999999999999999 99999 999999999999999985 89999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHH-HHHHHHcCCHHHHhhhcCHHHHHHHHHHHHHHHHCCCcccceEEeeccceEEEeEecC--
Q 012457 326 DPSFSLPDFVSEVQEAIRP-VLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMG-- 402 (463)
Q Consensus 326 DPsFd~~~FL~~areai~p-ILeAf~~GDle~LK~~cseavyn~faa~Ik~r~~~Gl~~d~kIL~I~~VeI~~ak~~e-- 402 (463)
||+|++++|+++|+++|+| ||+||++||+++||+||++++|+.|+++|++|+++|++++++||+|++++|++|++++
T Consensus 72 DPsF~~~~Fl~~a~~ai~p~Il~Af~~GD~~~Lk~llse~~y~~f~~~i~~r~~~G~~~d~~il~I~~vdI~~a~~~~~~ 151 (222)
T 3qk9_A 72 DPTFSNESFTRHLREYIVPEILEAYVKGDVKVLKKWFSEAPFNVYAAQQKIFKEQDVYADGRILDIRGVEIVSAKLLAPQ 151 (222)
T ss_dssp ---CCHHHHHHHHHHTHHHHHHHHHHHTCHHHHHHHBCHHHHHHHHHHHHHHHTTTEEECCEEEEEEEEEEEEEEECSSS
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhhcCHHHHHHHHHHHHHHHHCCCEeeeeEeeecceEEEEEEEecCC
Confidence 9999999999999999887 9999999999999999999999999999999999999999999999999999999995
Q ss_pred CccEEEEEEEEEEEEEEEc-CCCCcccCCCCcceEEEecccccCCcccc
Q 012457 403 SSPIIIVAFQTQQIYCVRD-KHGTITEGGKVNNTALLFPECGHLPLNEA 450 (463)
Q Consensus 403 ~~pvItVrF~aQqI~~vRD-k~GeVVEGd~d~I~~v~Y~~~~~~~~~e~ 450 (463)
+.|+|||+|++|||+|+|| ++|+||+|+|++|.++.|.|++-++.++.
T Consensus 152 ~~p~itV~f~aq~i~~~rd~k~GeVVeGd~d~i~~~~~~WtF~R~~~~~ 200 (222)
T 3qk9_A 152 DIPVLVVGCRAQEINLYRKKKTGEIAAGDEANILMSSYAMVFTRDPEQI 200 (222)
T ss_dssp CCEEEEEEEEEEEECCEEESTTCCCSSSCTTCCEEEEEEEEEEECCC--
T ss_pred CceEEEEEEEEEEEEEEEeCCCCccccCCCCCceEEEEEEEEEEcCccC
Confidence 7999999999999999999 99999999999999999999987776543
No 2
>2cw9_A Translocase of inner mitochondrial membrane; structure genomics, TIM, structural genomics, NPPFSA, riken structural genomics/proteomics initiative; HET: 1PE; 1.90A {Homo sapiens} SCOP: d.17.4.13
Probab=100.00 E-value=3.3e-40 Score=310.71 Aligned_cols=163 Identities=26% Similarity=0.467 Sum_probs=148.9
Q ss_pred hhhhhcccccchh-------hhhhcccccccccChHHHHHHHHHHcCCCCChhHHHHHHHHH-HHHHHHHHHcCCHHHHh
Q 012457 287 VRERWETSDNPIV-------HKIQDMNETIFQETDAAASIKEIRRRDPSFSLPDFVSEVQEA-IRPVLSAYMKGDVETLK 358 (463)
Q Consensus 287 ~r~~~eeSenP~V-------~ki~di~d~lf~ete~a~vl~eIkk~DPsFd~~~FL~~area-i~pILeAf~~GDle~LK 358 (463)
.+++|||||||+| ++++|+++++|++|+.+.+|++|+++||+||++.|+++|+.+ |.+|++||.+||++.||
T Consensus 3 ~~~~~~~s~n~~v~~~r~~~~~~~~~~~~~f~~s~~~~~l~~i~~~dp~Fd~~~Fl~~ak~~iy~~Iq~A~~~gD~~~Lr 82 (194)
T 2cw9_A 3 SGSSGDESDNAFIRASRALTDKVTDLLGGLFSKTEMSEVLTEILRVDPAFDKDRFLKQCENDIIPNVLEAMISGELDILK 82 (194)
T ss_dssp ---------CHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTHHHHHHHHHHHTCHHHHH
T ss_pred ccccccCCCCceEEeehhhhhhhhhhhccccCCCHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 5678999999999 588888999999999999999999999999999999999999 67799999999999999
Q ss_pred hhcCHHHHHHHHHHHHHHHHCCCcccceEEeeccceEEEeEecCCccEEEEEEEEEEEEEEEcCCCCcccCCCCcceEEE
Q 012457 359 KYCSPEVIERCKAEHTAYQSHGIFFDNRILHVSEVEVRETKMMGSSPIIIVAFQTQQIYCVRDKHGTITEGGKVNNTALL 438 (463)
Q Consensus 359 ~~cseavyn~faa~Ik~r~~~Gl~~d~kIL~I~~VeI~~ak~~e~~pvItVrF~aQqI~~vRDk~GeVVEGd~d~I~~v~ 438 (463)
+||+|++|+.|+++|++|.++|+++++++|+|++++|++++++++.|+|+|+|++|+|+|+||++|+||+|+|+.+..+.
T Consensus 83 ~~~t~~~~~~~~~~i~~r~~~g~~~~~~~v~i~~~el~~a~~~~~~~~itV~f~~~~i~~~rd~~G~vveG~~~~~~~v~ 162 (194)
T 2cw9_A 83 DWCYEATYSQLAHPIQQAKALGLQFHSRILDIDNVDLAMGKMVEQGPVLIITFQAQLVMVVRNPKGEVVEGDPDKVLRML 162 (194)
T ss_dssp HHBCHHHHHHHHHHHHHHHHTTCEECCEEEEEEEEEEEEEEEETTEEEEEEEEEEEEECEEECTTSCEEEECTTCCEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHCCCccccEEEEecccEEEEEEEeCCeeEEEEEEEEEEEEEEECCCCCEecCCCCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccCCccc
Q 012457 439 FPECGHLPLNE 449 (463)
Q Consensus 439 Y~~~~~~~~~e 449 (463)
|.|++-+++.+
T Consensus 163 e~W~f~R~~~~ 173 (194)
T 2cw9_A 163 YVWALCRDQDE 173 (194)
T ss_dssp EEEEEEECTTC
T ss_pred EEEEEEEeCCC
Confidence 99997777665
No 3
>4hyz_A Uncharacterized protein; PF13026 family protein, DUF3887, structural genomics, joint for structural genomics, JCSG; 2.25A {Ruminococcus gnavus}
Probab=87.36 E-value=2 Score=36.49 Aligned_cols=99 Identities=8% Similarity=-0.012 Sum_probs=58.7
Q ss_pred HHcCCCCChhHHHHHHHHHHHHHHHHHHcCCHHHHhhhcCHHHHHHHHHHHHHHHHCC-CcccceEEeeccceEEEeEec
Q 012457 323 RRRDPSFSLPDFVSEVQEAIRPVLSAYMKGDVETLKKYCSPEVIERCKAEHTAYQSHG-IFFDNRILHVSEVEVRETKMM 401 (463)
Q Consensus 323 kk~DPsFd~~~FL~~areai~pILeAf~~GDle~LK~~cseavyn~faa~Ik~r~~~G-l~~d~kIL~I~~VeI~~ak~~ 401 (463)
+.++..||.+.-...|++. ++-+..||.+.+...|++.+-+.+..+.-. .-.. +.--..+..|.++.+.... .
T Consensus 5 ~~l~~~fde~~v~~~A~~~----I~~l~~~dy~~i~~~~~~~lk~~Lt~e~l~-~~~~~~~~~G~f~s~~~~~~~~~~-~ 78 (114)
T 4hyz_A 5 KELPEGFDKETVRKQAMED----IEIAQSKDYESWKSRFTKDLQSSLTEESYD-SYLKILEKQGEFKEFGKCTYLGQI-K 78 (114)
T ss_dssp SSCCTTCCHHHHHHHHHHH----HHHHHTTCHHHHHTTBCHHHHTTCCHHHHH-HHHHHHHTTCSEEEEEEEEEEEEE-E
T ss_pred hcCChhhhHHHHHHHHHHH----HHHHHhCCHHHHHHHhCHHHHhhCCHHHHH-HHHHHHHhcCCceeeeceeeeeec-c
Confidence 4567889999777777654 477889999999999999986555443222 1111 1123566667666654443 3
Q ss_pred CCccEEEEEEEE------EEEEEEEcCCCCcc
Q 012457 402 GSSPIIIVAFQT------QQIYCVRDKHGTIT 427 (463)
Q Consensus 402 e~~pvItVrF~a------QqI~~vRDk~GeVV 427 (463)
++....+|-+.+ -...++.|++|+++
T Consensus 79 ~~~~y~vv~~~~~ye~~~~~f~i~Fd~d~kl~ 110 (114)
T 4hyz_A 79 DNKKYGGVIIVVKYEEGNVNYSLAYDEDMNLV 110 (114)
T ss_dssp TTEEEEEEEEEEEETTEEEEEEEEECTTSCEE
T ss_pred CCCceEEEEEEEEEeccceEEEEEECCCCcEe
Confidence 333333333322 23445557777765
No 4
>3ehc_A Snoal-like polyketide cyclase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.12A {Agrobacterium tumefaciens str}
Probab=37.89 E-value=69 Score=25.86 Aligned_cols=27 Identities=11% Similarity=0.206 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHcCCHHHHhhhcCHHH
Q 012457 339 QEAIRPVLSAYMKGDVETLKKYCSPEV 365 (463)
Q Consensus 339 reai~pILeAf~~GDle~LK~~cseav 365 (463)
+..+....+||.+||++.|..+++|++
T Consensus 6 ~~~v~~~~~~~~~~d~~~~~~~~a~d~ 32 (128)
T 3ehc_A 6 NDIYLAYLDSLNHQAFDELGTFVDDNV 32 (128)
T ss_dssp HHHHHHHHHHHHTTCGGGGGGTEEEEE
T ss_pred HHHHHHHHHHHhcCCHHHHHHhcCcce
Confidence 445555778999999999999998764
No 5
>3dmc_A NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, unknow function; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.17.4.10
Probab=31.56 E-value=13 Score=31.54 Aligned_cols=30 Identities=3% Similarity=0.123 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHhhhcCHH
Q 012457 335 VSEVQEAIRPVLSAYMKGDVETLKKYCSPE 364 (463)
Q Consensus 335 L~~areai~pILeAf~~GDle~LK~~csea 364 (463)
+..+++++...++|+..||.+.|..+|+++
T Consensus 11 ~~~~~~~~~~f~~A~~~gD~~~l~~lla~D 40 (134)
T 3dmc_A 11 LKVAHQGFEFFTQGLATGEWQKFLDMLTED 40 (134)
T ss_dssp HHHHHHHHHHHHHHHHHSCCHHHHTTEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHcCCC
Confidence 456777888899999999999999888664
No 6
>2gey_A ACLR protein; alpha+beta barrel, oxidoreductase; HET: PG4; 1.80A {Streptomyces galilaeus} SCOP: d.17.4.9
Probab=31.34 E-value=1.4e+02 Score=25.11 Aligned_cols=27 Identities=19% Similarity=0.258 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHhhhcCHH
Q 012457 338 VQEAIRPVLSAYMKGDVETLKKYCSPE 364 (463)
Q Consensus 338 areai~pILeAf~~GDle~LK~~csea 364 (463)
.++.+...++||.+||++.|..+++++
T Consensus 6 ~~~~v~~~~~a~~~~D~~~~~~~~a~D 32 (158)
T 2gey_A 6 RKALCLEMVAAWNRWDLSGIIKHWSPD 32 (158)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHTTEEEE
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHcCCC
Confidence 345555677899999999999998764
No 7
>3g0k_A Putative membrane protein; snoal-like polyketide cyclase, structural genomics, joint CE structural genomics, JCSG; HET: MSE; 1.30A {Novosphingobium aromaticivorans}
Probab=28.54 E-value=86 Score=26.78 Aligned_cols=27 Identities=11% Similarity=0.336 Sum_probs=20.4
Q ss_pred HHHHHHHHH-HHHcCCHHHHhhhcCHHH
Q 012457 339 QEAIRPVLS-AYMKGDVETLKKYCSPEV 365 (463)
Q Consensus 339 reai~pILe-Af~~GDle~LK~~cseav 365 (463)
++.+...++ ||..||++.|..||+++.
T Consensus 30 k~lV~~f~~~a~~~~D~~~~~~~~a~D~ 57 (148)
T 3g0k_A 30 HDLVIEMYNKVLIAMDSSAVDRYIAPGY 57 (148)
T ss_dssp HHHHHHHHHHTTTTTCGGGGGGTEEEEE
T ss_pred HHHHHHHHHHHHhcCCHHHHHHhcCcCe
Confidence 444555555 888999999999998764
No 8
>3f40_A Uncharacterized NTF2-like protein; YP_677363.1, NTF2-like protein of unknown function, structural genomics; HET: MSE; 1.27A {Cytophaga hutchinsonii atcc 33406}
Probab=28.24 E-value=18 Score=29.72 Aligned_cols=27 Identities=11% Similarity=0.142 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHcCCHHHHhhhcCHHH
Q 012457 339 QEAIRPVLSAYMKGDVETLKKYCSPEV 365 (463)
Q Consensus 339 reai~pILeAf~~GDle~LK~~cseav 365 (463)
++.....++||..||.+.|..+|+|++
T Consensus 9 ~~~v~~f~~A~~~gD~~~l~~lla~Dv 35 (114)
T 3f40_A 9 RDLVLEFIHALNTENFPAAKKRLNENF 35 (114)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHTEEEEE
T ss_pred HHHHHHHHHHHHcCCHHHHHHhcCCCe
Confidence 344445779999999999999998865
No 9
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=27.01 E-value=4.3e+02 Score=25.42 Aligned_cols=16 Identities=6% Similarity=0.254 Sum_probs=7.4
Q ss_pred HHHHhhHHHHHHHHHh
Q 012457 86 ELKERTKQTTEQLYKQ 101 (463)
Q Consensus 86 ~lk~r~~~~a~~~~k~ 101 (463)
.|+.|+..-++.+...
T Consensus 70 elr~kL~p~~~el~~~ 85 (273)
T 3s84_A 70 QLRRQLTPYAQRMERV 85 (273)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444443
No 10
>2f86_B Hypothetical protein K11E8.1D; UNC-43, oligomerization domain, transferase; 2.64A {Caenorhabditis elegans} SCOP: d.17.4.7
Probab=25.14 E-value=21 Score=31.01 Aligned_cols=29 Identities=21% Similarity=0.416 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHhhhcCHHH
Q 012457 337 EVQEAIRPVLSAYMKGDVETLKKYCSPEV 365 (463)
Q Consensus 337 ~areai~pILeAf~~GDle~LK~~cseav 365 (463)
....++...++|+.+||.+.+..+|+|++
T Consensus 13 eI~~~~~~~~~Ai~~gD~~~~~~l~~~dv 41 (143)
T 2f86_B 13 DIVRVTQTLLDAISCKDFETYTRLCDTSM 41 (143)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHEEEEE
T ss_pred HHHHHHHHHHHHHHccCHHHHHHhcCCCE
Confidence 34445556889999999999998887764
No 11
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=24.00 E-value=97 Score=23.22 Aligned_cols=22 Identities=23% Similarity=0.370 Sum_probs=12.1
Q ss_pred HHHHhhhChhhHHHHHHHHHHHHHH
Q 012457 56 IKGEAESNPEFKHSVKELKKKAEEI 80 (463)
Q Consensus 56 iK~E~~KnkElkeniK~~~eea~kl 80 (463)
+++|..| |-+.-|+|-+++.+|
T Consensus 4 lreeaak---lfeewkklaeeaakl 25 (62)
T 2i7u_A 4 LREEAAK---LFEEWKKLAEEAAKL 25 (62)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHHH---HHHHHHHHHHHHHHH
Confidence 4445443 344556666666666
No 12
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=21.33 E-value=35 Score=30.18 Aligned_cols=54 Identities=13% Similarity=0.245 Sum_probs=36.5
Q ss_pred ccccChHHHHHHHHHHcC----CCCC---hhHHHHHHHHHHHHHHHHHHcC--CHHHHhhhcC
Q 012457 309 IFQETDAAASIKEIRRRD----PSFS---LPDFVSEVQEAIRPVLSAYMKG--DVETLKKYCS 362 (463)
Q Consensus 309 lf~ete~a~vl~eIkk~D----PsFd---~~~FL~~areai~pILeAf~~G--Dle~LK~~cs 362 (463)
+|.+.=....+.+|+.++ |.|- ...|+..+.+.+..|-.|...| |.+.|....+
T Consensus 17 l~~~g~LD~~f~qL~~L~~~~~~~~~~ell~~Fl~d~~~~l~~L~~al~~~~~D~~~l~~~aH 79 (153)
T 3us6_A 17 MFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDLSFAVDQQSIDFKKVDAHVH 79 (153)
T ss_dssp HHHTTSCCHHHHHHHHTCBTTBTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred cccccchHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH
Confidence 333333334466666664 4443 3678888888888899999998 9888865543
No 13
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=21.07 E-value=1.1e+02 Score=21.75 Aligned_cols=25 Identities=40% Similarity=0.676 Sum_probs=20.0
Q ss_pred hhhHHHHHHHHHHHHHHhhhHHHHH
Q 012457 64 PEFKHSVKELKKKAEEIKGVKEELK 88 (463)
Q Consensus 64 kElkeniK~~~eea~kl~~~~e~lk 88 (463)
+|||.-|.+|.+.-.+|+.-+|-||
T Consensus 6 kelknyiqeleernaelknlkehlk 30 (46)
T 3he4_B 6 KELKNYIQELEERNAELKNLKEHLK 30 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHhHHHHHH
Confidence 5788888888888888888777665
No 14
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=20.65 E-value=75 Score=22.60 Aligned_cols=24 Identities=46% Similarity=0.555 Sum_probs=18.5
Q ss_pred HHHHHHHH-HHHHHHcCCHHHHhhh
Q 012457 337 EVQEAIRP-VLSAYMKGDVETLKKY 360 (463)
Q Consensus 337 ~areai~p-ILeAf~~GDle~LK~~ 360 (463)
.--++|+. |--|+..||.++.+.+
T Consensus 8 d~I~aiEQqiyvA~seGd~etv~~L 32 (40)
T 1gp8_A 8 ANKDAIRKQMDAAASKGDVETYRKL 32 (40)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 34467777 9999999999886653
No 15
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=20.52 E-value=2.6e+02 Score=22.18 Aligned_cols=37 Identities=19% Similarity=0.388 Sum_probs=28.5
Q ss_pred hhhChhhHHHHHHHHHHHHHHhhhHHHHHHhhHHHHH
Q 012457 60 AESNPEFKHSVKELKKKAEEIKGVKEELKERTKQTTE 96 (463)
Q Consensus 60 ~~KnkElkeniK~~~eea~kl~~~~e~lk~r~~~~a~ 96 (463)
+..||||...+.+=++|.++|+.--..|++++-+-++
T Consensus 2 IkQNKeL~~kl~~Kq~EI~rLnvlvgslR~KLiKYte 38 (74)
T 2q6q_A 2 VQQNKELNFKLREKQNEIFELKKIAETLRSKLEKYVD 38 (74)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3569999999999999999997765678875555443
Done!