Query 012458
Match_columns 463
No_of_seqs 134 out of 1199
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 02:51:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012458.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012458hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1303 Amino acid transporter 100.0 5.2E-59 1.1E-63 457.6 34.9 404 23-460 33-437 (437)
2 PTZ00206 amino acid transporte 100.0 3.8E-58 8.2E-63 464.9 30.0 402 27-458 59-465 (467)
3 KOG1304 Amino acid transporter 100.0 2.7E-57 5.9E-62 437.2 31.5 388 27-457 46-449 (449)
4 PF01490 Aa_trans: Transmembra 100.0 2.2E-54 4.8E-59 435.4 -2.4 402 26-454 1-408 (409)
5 PLN03074 auxin influx permease 100.0 4.1E-49 8.9E-54 397.0 29.9 389 26-462 44-456 (473)
6 KOG1305 Amino acid transporter 100.0 1.9E-46 4E-51 367.2 25.6 401 25-460 3-408 (411)
7 KOG4303 Vesicular inhibitory a 100.0 8.6E-46 1.9E-50 336.4 8.1 405 22-463 111-520 (524)
8 COG0814 SdaC Amino acid permea 100.0 3.7E-33 8E-38 277.4 32.7 392 25-452 6-410 (415)
9 PF03222 Trp_Tyr_perm: Tryptop 100.0 2.9E-25 6.4E-30 219.4 32.2 370 27-446 2-391 (394)
10 PRK10483 tryptophan permease; 99.9 2.1E-25 4.6E-30 218.2 29.6 355 23-425 6-373 (414)
11 PRK09664 tryptophan permease T 99.9 4.5E-25 9.7E-30 215.6 30.3 381 25-450 6-404 (415)
12 PRK15132 tyrosine transporter 99.9 2E-24 4.4E-29 212.4 31.4 373 28-450 3-392 (403)
13 TIGR00837 araaP aromatic amino 99.9 7.8E-24 1.7E-28 211.0 24.0 345 34-425 3-359 (381)
14 PRK13629 threonine/serine tran 99.9 1E-21 2.3E-26 192.0 32.1 381 33-444 24-433 (443)
15 TIGR00814 stp serine transport 99.9 6E-20 1.3E-24 181.3 26.0 363 31-426 6-380 (397)
16 PRK10655 potE putrescine trans 99.6 1.4E-11 3E-16 125.2 32.6 241 24-290 4-245 (438)
17 PRK15049 L-asparagine permease 99.5 3.5E-11 7.6E-16 123.8 32.1 366 24-424 26-405 (499)
18 PRK10249 phenylalanine transpo 99.5 4.9E-11 1.1E-15 121.7 31.3 244 23-290 18-265 (458)
19 PRK10644 arginine:agmatin anti 99.5 8.1E-11 1.8E-15 119.8 32.6 241 23-290 5-247 (445)
20 PRK10435 cadB lysine/cadaverin 99.5 1.2E-10 2.5E-15 118.2 32.9 244 23-293 2-246 (435)
21 TIGR00905 2A0302 transporter, 99.5 2.3E-10 5E-15 117.3 32.7 248 25-291 6-255 (473)
22 TIGR03810 arg_ornith_anti argi 99.4 2.1E-10 4.5E-15 117.5 31.2 365 26-425 1-380 (468)
23 PRK10746 putative transport pr 99.4 2.2E-10 4.8E-15 116.9 29.9 366 24-424 8-387 (461)
24 TIGR00909 2A0306 amino acid tr 99.4 1.1E-10 2.4E-15 118.3 26.6 293 25-342 2-307 (429)
25 TIGR01773 GABAperm gamma-amino 99.4 4.3E-10 9.4E-15 114.8 30.7 244 23-291 9-258 (452)
26 PRK11021 putative transporter; 99.4 8.4E-10 1.8E-14 111.2 32.0 230 29-288 2-231 (410)
27 PRK10238 aromatic amino acid t 99.4 4.4E-10 9.6E-15 114.6 30.2 239 23-285 9-251 (456)
28 PRK11387 S-methylmethionine tr 99.4 5.6E-10 1.2E-14 114.5 30.6 288 24-334 12-310 (471)
29 PRK11049 D-alanine/D-serine/gl 99.4 8.3E-10 1.8E-14 113.1 31.2 243 24-290 18-267 (469)
30 PRK10580 proY putative proline 99.4 1.1E-09 2.4E-14 111.8 32.0 242 23-288 6-253 (457)
31 TIGR00906 2A0303 cationic amin 99.4 9.1E-10 2E-14 114.6 30.3 374 22-424 24-410 (557)
32 TIGR00912 2A0309 spore germina 99.4 1.1E-10 2.3E-15 115.5 22.4 285 27-346 2-298 (359)
33 TIGR00913 2A0310 amino acid pe 99.4 2.3E-09 4.9E-14 110.3 32.6 241 26-288 2-251 (478)
34 PRK10836 lysine transporter; P 99.3 6.6E-09 1.4E-13 107.0 32.2 247 22-292 11-263 (489)
35 TIGR00911 2A0308 L-type amino 99.3 2E-09 4.3E-14 111.3 28.1 247 23-291 39-292 (501)
36 TIGR00930 2a30 K-Cl cotranspor 99.3 3.2E-09 6.9E-14 115.9 30.4 249 25-288 75-334 (953)
37 TIGR00908 2A0305 ethanolamine 99.3 1.7E-09 3.8E-14 110.0 26.9 238 24-287 5-244 (442)
38 PF13520 AA_permease_2: Amino 99.3 4.3E-09 9.3E-14 106.7 28.2 291 29-346 2-305 (426)
39 PRK11357 frlA putative fructos 99.3 8.1E-09 1.8E-13 105.2 29.3 242 24-289 6-250 (445)
40 PRK10197 gamma-aminobutyrate t 99.2 1.4E-08 3.1E-13 103.2 28.2 347 38-424 4-367 (446)
41 KOG3832 Predicted amino acid t 99.2 7.9E-11 1.7E-15 101.1 9.7 221 30-259 14-301 (319)
42 KOG1287 Amino acid transporter 99.2 2.1E-09 4.6E-14 106.2 20.7 364 24-426 10-387 (479)
43 COG1113 AnsP Gamma-aminobutyra 99.2 9.2E-09 2E-13 100.1 23.5 362 24-424 11-388 (462)
44 COG0531 PotE Amino acid transp 99.1 1E-07 2.2E-12 97.7 28.9 286 23-331 9-304 (466)
45 PRK15238 inner membrane transp 99.0 1.6E-06 3.4E-11 89.7 32.2 251 25-289 6-266 (496)
46 TIGR03428 ureacarb_perm permea 99.0 3.4E-06 7.4E-11 86.7 33.9 258 23-294 10-273 (475)
47 TIGR00907 2A0304 amino acid pe 98.9 1.8E-06 3.8E-11 89.0 29.5 250 24-288 10-271 (482)
48 PF03845 Spore_permease: Spore 98.9 2.9E-07 6.2E-12 89.5 21.3 283 27-346 1-294 (320)
49 TIGR03813 put_Glu_GABA_T putat 98.8 8.3E-06 1.8E-10 83.8 29.3 53 239-294 202-254 (474)
50 TIGR00910 2A0307_GadC glutamat 98.8 3.5E-06 7.6E-11 87.1 25.8 51 234-287 197-247 (507)
51 COG0833 LysP Amino acid transp 98.8 1.3E-05 2.9E-10 80.1 27.9 364 24-423 42-426 (541)
52 PF00324 AA_permease: Amino ac 98.6 5.4E-07 1.2E-11 92.7 12.3 284 38-339 7-314 (478)
53 TIGR00800 ncs1 NCS1 nucleoside 98.5 0.00026 5.6E-09 72.0 28.8 191 96-297 76-274 (442)
54 COG3949 Uncharacterized membra 98.4 0.0002 4.3E-09 67.3 24.2 135 31-187 6-143 (349)
55 PRK11375 allantoin permease; P 98.4 0.0016 3.4E-08 66.9 33.2 241 95-345 88-342 (484)
56 KOG1286 Amino acid transporter 98.4 8.4E-06 1.8E-10 83.9 15.7 309 23-345 27-352 (554)
57 PRK09442 panF sodium/panthothe 98.4 0.002 4.3E-08 66.5 32.5 150 25-196 40-195 (483)
58 TIGR02119 panF sodium/pantothe 98.3 0.0025 5.4E-08 65.5 31.9 150 25-196 39-194 (471)
59 PRK12488 acetate permease; Pro 98.3 0.007 1.5E-07 63.3 34.9 150 25-197 66-218 (549)
60 PF00474 SSF: Sodium:solute sy 98.2 0.00017 3.8E-09 72.6 20.2 154 25-200 5-161 (406)
61 TIGR00813 sss transporter, SSS 98.1 0.0018 3.8E-08 65.3 26.0 148 26-195 3-152 (407)
62 TIGR02358 thia_cytX probable h 98.1 0.0072 1.6E-07 60.3 29.9 177 95-296 57-234 (386)
63 KOG1289 Amino acid transporter 98.1 0.0023 4.9E-08 64.4 24.1 251 30-297 55-315 (550)
64 TIGR02711 symport_actP cation/ 98.0 0.036 7.8E-07 58.0 34.7 148 25-195 66-216 (549)
65 PRK11017 codB cytosine permeas 97.9 0.016 3.4E-07 58.2 27.9 174 95-295 70-244 (404)
66 COG1457 CodB Purine-cytosine p 97.9 0.0075 1.6E-07 60.1 24.8 175 97-297 82-258 (442)
67 COG0591 PutP Na+/proline sympo 97.9 0.049 1.1E-06 56.1 33.6 253 25-296 37-300 (493)
68 PRK09395 actP acetate permease 97.8 0.072 1.6E-06 55.8 34.4 148 25-195 68-218 (551)
69 TIGR02121 Na_Pro_sym sodium/pr 97.6 0.088 1.9E-06 54.4 28.4 155 25-196 35-193 (487)
70 COG1953 FUI1 Cytosine/uracil/t 97.6 0.11 2.3E-06 52.4 30.0 203 94-306 101-318 (497)
71 PF02554 CstA: Carbon starvati 97.5 0.0046 1E-07 59.5 15.3 165 7-193 33-197 (376)
72 TIGR00835 agcS amino acid carr 97.5 0.057 1.2E-06 54.0 23.2 88 26-117 45-138 (425)
73 PRK15419 proline:sodium sympor 97.4 0.2 4.4E-06 51.9 28.7 153 25-195 39-196 (502)
74 COG1914 MntH Mn2+ and Fe2+ tra 97.4 0.17 3.7E-06 50.4 28.8 132 28-183 17-150 (416)
75 COG4147 DhlC Predicted symport 97.4 0.2 4.2E-06 49.9 28.6 183 94-291 102-293 (529)
76 TIGR03648 Na_symport_lg probab 97.2 0.39 8.4E-06 50.4 35.7 149 25-195 31-181 (552)
77 PRK00701 manganese transport p 97.2 0.33 7.2E-06 49.2 29.1 45 96-140 94-138 (439)
78 PF02133 Transp_cyt_pur: Perme 97.2 0.0075 1.6E-07 61.4 13.8 184 96-292 71-259 (440)
79 TIGR00796 livcs branched-chain 96.8 0.59 1.3E-05 46.3 25.1 70 36-117 3-75 (378)
80 COG1966 CstA Carbon starvation 96.4 0.068 1.5E-06 54.0 13.6 124 9-138 33-156 (575)
81 PRK15015 carbon starvation pro 96.4 0.056 1.2E-06 55.9 13.2 121 7-137 64-186 (701)
82 KOG2082 K+/Cl- cotransporter K 96.2 1.9 4.1E-05 45.5 22.2 104 28-137 115-220 (1075)
83 PRK10484 putative transporter; 96.1 2.1 4.5E-05 44.7 31.8 156 25-196 37-198 (523)
84 PF01566 Nramp: Natural resist 95.7 2.4 5.2E-05 41.8 23.3 77 97-187 43-121 (358)
85 TIGR00796 livcs branched-chain 95.1 0.55 1.2E-05 46.5 13.9 130 35-185 197-330 (378)
86 PF05525 Branch_AA_trans: Bran 94.8 0.47 1E-05 47.5 12.5 122 37-177 205-329 (427)
87 PF01235 Na_Ala_symp: Sodium:a 94.8 4.9 0.00011 40.2 23.7 52 23-75 14-66 (416)
88 PF05525 Branch_AA_trans: Bran 93.9 7.8 0.00017 39.0 21.8 46 28-73 3-51 (427)
89 KOG1288 Amino acid transporter 93.3 9.6 0.00021 40.1 18.2 52 235-289 298-349 (945)
90 COG1114 BrnQ Branched-chain am 93.1 2.1 4.5E-05 42.2 12.9 131 37-187 207-340 (431)
91 KOG2083 Na+/K+ symporter [Inor 92.8 0.27 5.9E-06 50.2 6.5 225 46-293 50-286 (643)
92 PRK15433 branched-chain amino 88.9 6.5 0.00014 39.6 12.0 122 36-177 208-332 (439)
93 COG0814 SdaC Amino acid permea 88.3 2 4.3E-05 43.3 8.2 154 264-424 220-375 (415)
94 PRK15433 branched-chain amino 86.9 37 0.0008 34.3 23.5 66 28-105 8-77 (439)
95 TIGR01197 nramp NRAMP (natural 86.2 38 0.00083 33.8 26.5 98 34-140 10-108 (390)
96 COG4145 PanF Na+/panthothenate 85.4 39 0.00085 33.1 23.0 145 34-196 47-193 (473)
97 COG0733 Na+-dependent transpor 84.3 49 0.0011 33.3 23.5 110 27-143 8-118 (439)
98 KOG2349 Na+:iodide/myo-inosito 83.8 24 0.00053 36.8 13.2 243 25-293 44-298 (585)
99 PF02705 K_trans: K+ potassium 79.6 82 0.0018 32.7 18.4 263 59-346 36-307 (534)
100 COG1115 AlsT Na+/alanine sympo 78.5 79 0.0017 31.9 24.2 145 24-187 59-210 (452)
101 PRK10745 trkD potassium transp 74.3 1.2E+02 0.0027 32.0 17.2 281 40-346 22-318 (622)
102 PF00209 SNF: Sodium:neurotran 70.9 1.4E+02 0.003 31.2 27.7 30 28-57 5-35 (523)
103 PLN00151 potassium transporter 70.2 1.7E+02 0.0038 32.0 21.5 174 159-345 271-449 (852)
104 PRK09928 choline transport pro 57.4 1.4E+02 0.0031 32.0 11.7 87 123-210 416-503 (679)
105 PF02028 BCCT: BCCT family tra 54.9 1.6E+02 0.0034 30.5 11.4 83 124-209 400-482 (485)
106 TIGR00842 bcct choline/carniti 53.3 1.1E+02 0.0024 31.1 9.9 70 123-192 363-434 (453)
107 PRK09950 putative transporter; 52.1 1.2E+02 0.0026 31.4 10.0 88 123-211 409-498 (506)
108 KOG2466 Uridine permease/thiam 51.7 2.9E+02 0.0062 28.4 18.5 263 24-306 52-332 (572)
109 PF11239 DUF3040: Protein of u 49.8 12 0.00025 28.1 1.8 8 1-8 1-8 (82)
110 KOG4812 Golgi-associated prote 49.4 38 0.00083 30.8 5.2 78 380-461 161-254 (262)
111 COG1292 BetT Choline-glycine b 44.7 1.8E+02 0.0039 30.2 9.7 87 123-212 412-498 (537)
112 PLN02680 carbon-monoxide oxyge 43.5 2.6E+02 0.0057 25.6 9.8 68 265-336 76-143 (232)
113 TIGR00794 kup potassium uptake 43.4 4.6E+02 0.0099 28.4 21.2 174 160-346 166-344 (688)
114 PRK13183 psbN photosystem II r 42.2 30 0.00064 22.6 2.5 31 267-297 4-34 (46)
115 PRK03356 L-carnitine/gamma-but 42.0 4.2E+02 0.0091 27.5 13.0 85 124-209 413-498 (504)
116 KOG1619 Cytochrome b [Energy p 41.2 2.9E+02 0.0062 25.4 9.6 91 238-336 62-152 (245)
117 PF01235 Na_Ala_symp: Sodium:a 41.2 2E+02 0.0044 29.0 9.4 90 99-201 296-385 (416)
118 KOG1289 Amino acid transporter 40.9 4.4E+02 0.0096 27.5 16.7 47 97-143 326-372 (550)
119 PRK04949 putative sulfate tran 40.6 3.1E+02 0.0066 25.5 11.8 46 255-306 19-64 (251)
120 TIGR00909 2A0306 amino acid tr 40.1 4E+02 0.0086 26.7 12.0 47 97-143 265-311 (429)
121 PLN00148 potassium transporter 39.1 5.6E+02 0.012 28.2 19.0 176 157-345 192-372 (785)
122 PF02468 PsbN: Photosystem II 38.2 35 0.00077 22.0 2.4 28 270-297 4-31 (43)
123 PRK12768 CysZ-like protein; Re 37.5 2.9E+02 0.0063 25.5 9.3 28 255-287 10-37 (240)
124 cd08764 Cyt_b561_CG1275_like N 36.9 3.2E+02 0.007 24.7 9.5 70 265-336 54-123 (214)
125 CHL00020 psbN photosystem II p 36.1 33 0.00071 22.1 1.9 28 270-297 4-31 (43)
126 PLN00150 potassium ion transpo 33.3 6.9E+02 0.015 27.5 17.3 174 159-345 211-389 (779)
127 PF02447 GntP_permease: GntP f 32.0 5.6E+02 0.012 26.1 11.1 83 380-462 237-323 (441)
128 COG3158 Kup K+ transporter [In 31.4 6.4E+02 0.014 26.5 17.9 56 59-116 55-110 (627)
129 cd08765 Cyt_b561_CYBRD1 Verteb 28.3 2.1E+02 0.0046 24.3 6.2 68 265-336 44-111 (153)
130 cd08762 Cyt_b561_CYBASC3 Verte 27.9 4.2E+02 0.009 23.2 8.4 68 265-336 67-134 (179)
131 PLN02351 cytochromes b561 fami 26.9 5.1E+02 0.011 23.9 12.4 68 265-337 80-147 (242)
132 cd08763 Cyt_b561_CYB561 Verteb 25.8 2.5E+02 0.0054 23.6 6.2 68 265-336 37-104 (143)
133 COG1292 BetT Choline-glycine b 25.4 7.9E+02 0.017 25.6 12.2 102 25-131 88-210 (537)
134 PF05656 DUF805: Protein of un 23.9 3.7E+02 0.008 21.3 8.3 25 409-433 55-79 (120)
135 PF05805 L6_membrane: L6 membr 22.3 2E+02 0.0043 25.6 5.1 29 397-425 45-73 (195)
136 PF07125 DUF1378: Protein of u 20.7 2.7E+02 0.0058 19.0 4.2 30 431-460 5-34 (59)
137 TIGR02230 ATPase_gene1 F0F1-AT 20.3 2.6E+02 0.0056 21.9 4.8 17 435-451 77-93 (100)
No 1
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=5.2e-59 Score=457.60 Aligned_cols=404 Identities=37% Similarity=0.649 Sum_probs=360.6
Q ss_pred CccccchHHHHHHHHHhhccccchhhHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHH
Q 012458 23 FIKRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAV 102 (463)
Q Consensus 23 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~ 102 (463)
+++|++|++++.+|.+|.++|.|+|+||++++++||+.|++++++.++++.||..+|.+|.+..+...++ |+++|+|++
T Consensus 33 ~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~-r~~~Y~dl~ 111 (437)
T KOG1303|consen 33 TPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGK-RRYRYPDLG 111 (437)
T ss_pred ccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc-cCCChHHHH
Confidence 4577789999999999999999999999999999999999999999999999999999999988888787 889999999
Q ss_pred HHHcccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCCccch
Q 012458 103 DMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNI 182 (463)
Q Consensus 103 ~~~~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l 182 (463)
+++||+++++++...+.+.+||+|+.|++..+|++..+.+..|.+.. ..+.+.|+++++++.+|++++||++.+
T Consensus 112 ~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~------~l~~~~f~iif~~i~~~~s~lp~~~~l 185 (437)
T KOG1303|consen 112 QAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN------SLDKQYFIIIFGLIVLPLSQLPNFHSL 185 (437)
T ss_pred HHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc------cccceehhhhHHHHHHHHHHCCCcchh
Confidence 99999999999999999999999999999999999999998776532 234678999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCchhHHHHHHHHHHHHHHhhcccceeehhhhhhcCCCCc
Q 012458 183 QSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPP 262 (463)
Q Consensus 183 ~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~ 262 (463)
+++|..+.++.+.+..+.+..++..+......+... ++..+.... ++++|++.|+|++|..+||||++||+|
T Consensus 186 ~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~---~~~~~~~~~---f~a~g~iaFaf~gH~v~peIq~tMk~p-- 257 (437)
T KOG1303|consen 186 SYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGY---LDLGTIPTV---FTALGIIAFAYGGHAVLPEIQHTMKSP-- 257 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCc---ccCCCCcch---hhhhhheeeeecCCeeeeehHhhcCCc--
Confidence 999999999999988888777776655443222221 111111111 899999999999999999999999998
Q ss_pred cccchhhhhHHHHHHHHHHHHHHhhhhhhhccCcccccccccccccCChHHHHHHHHHHHHHHHhhhhccccchHHHHHH
Q 012458 263 ANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEK 342 (463)
Q Consensus 263 ~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~ 342 (463)
++|+|++..++.+++.+|+.+++.||++|||+++++++.|+. ++.|+...+++++.+|++.+|+.+..|+.+.+|+
T Consensus 258 --~~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~--~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~ 333 (437)
T KOG1303|consen 258 --PKFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQ--PPTWLIALANILIVLHLIGSYQIYAQPLFDVVEK 333 (437)
T ss_pred --hhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhccc--CchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHH
Confidence 679999999999999999999999999999999999999996 5899999999999999999999999999999999
Q ss_pred HHHhhcCCCCccccccccCCCCCCCcCCchhhHHHHHHHHHHHHHHHhhCCchHHHHHHhhhhhhhhhHhhhhhHHHHHH
Q 012458 343 WICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQ 422 (463)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~v~~l~Ga~~~~~l~filP~l~~~~~ 422 (463)
....+.++ + + ++....|.+.|+.+++.++++|+.+|+|+++++++||....++.+++|+++|++.
T Consensus 334 ~~~~~~~~--~---------~----~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~ 398 (437)
T KOG1303|consen 334 LIGVKHPD--F---------K----KRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLI 398 (437)
T ss_pred HhccCCcc--c---------c----ccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 98754221 0 0 1344799999999999999999999999999999999999999999999999999
Q ss_pred hccchhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 012458 423 MNIEAWTRKWVMLRVF-SYVCFIVSTFGLVGSIQGIISA 460 (463)
Q Consensus 423 ~~~~~~~~~~~~~~~~-~~~g~~~~v~g~~~si~~~~~~ 460 (463)
+|.+++..+|+.++.+ .++|+++++....++++.++.|
T Consensus 399 ~k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~~ 437 (437)
T KOG1303|consen 399 KKPKRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLIID 437 (437)
T ss_pred hhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence 9999999999999988 7999999999999999998764
No 2
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=3.8e-58 Score=464.88 Aligned_cols=402 Identities=15% Similarity=0.154 Sum_probs=318.4
Q ss_pred cchHHHHHHHHHhhccccchhhHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHHHc
Q 012458 27 TGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCL 106 (463)
Q Consensus 27 ~~s~~~a~~~l~~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~~~~~ 106 (463)
+++..++.+|++|+++|+|+|+||++|+++||+.|++++++++.++.||.+++.++.++. +..+|+|++++++
T Consensus 59 ~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~~-------~~~sY~~la~~~~ 131 (467)
T PTZ00206 59 PGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADKT-------NIRTYEGVARVLL 131 (467)
T ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------CCCCHHHHHHHHh
Confidence 456689999999999999999999999999999999999999999999999999987652 4569999999999
Q ss_pred ccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCCccchhhHH
Q 012458 107 GKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLS 186 (463)
Q Consensus 107 G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s 186 (463)
||++++++++.+.+.++|+|++|+++.+|.++.+++....+ +.... ....+..+.+++.++++|++++|++++|+++|
T Consensus 132 G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~-~~~~~-~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S 209 (467)
T PTZ00206 132 GPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAP-DFLKQ-KSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVS 209 (467)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc-chhhh-ccCcEEeeeehhhhHhhhcccccchHHHHHHH
Confidence 99999999999999999999999999999999987642110 00000 01123344566778899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccccccc--cCCCCchhHHHHHHHHHHHHHHhhcccceeehhhhhhcCCCCccc
Q 012458 187 VIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFS--GVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPAN 264 (463)
Q Consensus 187 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~ 264 (463)
.++++++++..++++..+..+....+..+-+.. +.++........+.+.++|+++|||.||.+++++++||||| ++
T Consensus 210 ~i~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~--t~ 287 (467)
T PTZ00206 210 TIAVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNR--SV 287 (467)
T ss_pred HHHHHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhccc--ch
Confidence 999988765444333333222111110000000 00011112223468899999999999999999999999986 44
Q ss_pred cchhhhhHHHHHHHHHHHHHHhhhhhhhccCcccccccccccccCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHH
Q 012458 265 QTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWI 344 (463)
Q Consensus 265 ~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~ 344 (463)
+|+.++...++.+++++|..+|++||+.||++++++++.|+++ .+++...++++++.++++++||++.+|+|+.+++.+
T Consensus 288 ~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p-~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~ 366 (467)
T PTZ00206 288 GKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDP-VNEPAIMVGFVGVLVKLFVSYALLGMACRNALYDVI 366 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCC-CCCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHh
Confidence 8999999999999999999999999999999999999999953 356778889999999999999999999999999886
Q ss_pred HhhcCCCCccccccccCCCCCCCcCCchhhHHHHHHHHHHHHHHHhhCCchHHHHHHhhhhhhhhhHhhhhhHHHHHHh-
Q 012458 345 CEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQM- 423 (463)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~v~~l~Ga~~~~~l~filP~l~~~~~~- 423 (463)
..+ . + +...++|...+..+++.++++|+++|+++.+++++||++++.++|++|+++|++..
T Consensus 367 ~~~--~-----~-----------~~~~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~ 428 (467)
T PTZ00206 367 GWD--A-----R-----------KVAFWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGG 428 (467)
T ss_pred CCC--c-----c-----------cCchhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCC
Confidence 321 1 0 01124565666667777899999999999999999999999999999999999842
Q ss_pred --ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012458 424 --NIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGII 458 (463)
Q Consensus 424 --~~~~~~~~~~~~~~~~~~g~~~~v~g~~~si~~~~ 458 (463)
.++.+..+|...+.++++|++..+.||++++++.+
T Consensus 429 ~~~~~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 429 FTWQKVGPFYYISTYVVLITGVIAIVFGTGATIWGVT 465 (467)
T ss_pred ccHHhhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence 12223345567788999999999999999999875
No 3
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-57 Score=437.22 Aligned_cols=388 Identities=21% Similarity=0.306 Sum_probs=339.4
Q ss_pred cchHHHHHHHHHhhccccchhhHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHHH-
Q 012458 27 TGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMC- 105 (463)
Q Consensus 27 ~~s~~~a~~~l~~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~~~~- 105 (463)
..|..++..|++|.++|+|+|++|+||+++||+.|.+..++++.+++||.+.+++|.++...+.+. ...+|+|.++.+
T Consensus 46 ~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~-~~~~y~~~~~~a~ 124 (449)
T KOG1304|consen 46 PTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRG-PSLDYAETAESAM 124 (449)
T ss_pred CCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-ccccHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999999999999999766544443 567888888744
Q ss_pred ---------cccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcC
Q 012458 106 ---------LGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQA 176 (463)
Q Consensus 106 ---------~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~ 176 (463)
+|+++|.++++.+.++++|.|++|+++++++++++.+.. ....++.+.++.+...+.++++++
T Consensus 125 ~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~--------~~~~~s~~~~i~~~~~~~lll~~I 196 (449)
T KOG1304|consen 125 EGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEH--------SPGVLSVRLYILIQLPPLLLLNLI 196 (449)
T ss_pred cCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhcc--------CCCCccHHHHHHHHHHHHHHHHHH
Confidence 588889999999999999999999999999999998721 112577889999999999999999
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCchhHHHHHHHHHHHHHHhhcccceeehhhhhh
Q 012458 177 PDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDT 256 (463)
Q Consensus 177 ~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~ 256 (463)
||+|.|.++|.++.++.++... +..++..++.+ +.++.+...++.++..++|+.+|||.++.++.|++++
T Consensus 197 r~Lk~Lsp~Sl~Anv~~~~g~~----ii~~y~~~~~~------~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~ 266 (449)
T KOG1304|consen 197 RNLKILSPFSLFANVFILVGLA----IIMYYLVQDLP------PTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENS 266 (449)
T ss_pred HhhHHhhHHHHHHHHHHHHHHH----HHHHHHHhccC------CccccccccchhhhHHHHHHHHHHhccceEEEehhhc
Confidence 9999999999999999874333 44455554432 2233344445678899999999999999999999999
Q ss_pred cCCCCccccchh---hhhHHHHHHHHHHHHHHhhhhhhhccCcccccccccccccCChHHHHHHHHHHHHHHHhhhhccc
Q 012458 257 LKSPPPANQTMK---KASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYS 333 (463)
Q Consensus 257 m~~p~~~~~~~~---~~~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~~~~~~~~~~i~~~~s~pl~~ 333 (463)
||+| ++|+ +++..++.+++++|..+|++||++|||++++.+++|+| ++++...+++++.+.+..+||+++
T Consensus 267 Mk~P----~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP---~~~l~~~Vkl~~ai~I~ls~pLQ~ 339 (449)
T KOG1304|consen 267 MKKP----QKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLP---QEILSQTVKLLLAIAIFLTYPLQF 339 (449)
T ss_pred ccCh----hhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCC---ccHHHHHHHHHHHHHHHHcCchhh
Confidence 9998 9999 99999999999999999999999999999999999999 499999999999999999999999
Q ss_pred cchHHHHHHHHHhhcCCCCccccccccCCCCCCCcCCchhhHHHHHHHHHHHHHHHhhCCchHHHHHHhhhhhhhhhHhh
Q 012458 334 QPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIY 413 (463)
Q Consensus 334 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~v~~l~Ga~~~~~l~fi 413 (463)
+|..+.+|+.+.++... .++++..+.+|..+++++..+|..+||++.+++++|+++++.++++
T Consensus 340 yv~~eIi~~~i~~k~~~-----------------~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li 402 (449)
T KOG1304|consen 340 YVPIEIIEPGIRKKFSE-----------------NRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALI 402 (449)
T ss_pred hhhHHHHHHhHHHhcCc-----------------chhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHH
Confidence 99999999998775321 2345888999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHhccc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012458 414 FPVEMYFKQMNIE---AWTRKWVMLRVFSYVCFIVSTFGLVGSIQGI 457 (463)
Q Consensus 414 lP~l~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~v~g~~~si~~~ 457 (463)
+|+++++....++ ++.++++.+.+++++|++.++.|||.++.++
T Consensus 403 ~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 403 FPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI 449 (449)
T ss_pred ccHHHHHHHhcccccCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 9999999986443 3456667788899999999999999998763
No 4
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=2.2e-54 Score=435.38 Aligned_cols=402 Identities=24% Similarity=0.375 Sum_probs=329.7
Q ss_pred ccchHHHHHHHHHhhccccchhhHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHHH
Q 012458 26 RTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMC 105 (463)
Q Consensus 26 ~~~s~~~a~~~l~~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~~~~ 105 (463)
+|+|++++++|++|+++|+|+|++|++|+++||+.|++++++++.++.||.+++.|+.++.+ +++ +..+|+|++++.
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~--~~~-~~~~y~~l~~~~ 77 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMP--NGT-GRRSYGDLARRA 77 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccc--ccc-cccccccccccc
Confidence 57899999999999999999999999999999999999999999999999999999987653 122 677999999999
Q ss_pred cccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCCccchhhH
Q 012458 106 LGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSL 185 (463)
Q Consensus 106 ~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~ 185 (463)
+||++++++++++.+.++|.+++|.+..+|.+.++.+..+.+ ...++..+.++.+++++|++++|+++++++.
T Consensus 78 ~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~-------~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~ 150 (409)
T PF01490_consen 78 FGPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD-------LFISRYVWIIIFALIVLPLSFLKNLKSLRYL 150 (409)
T ss_pred ccccccccccchheeccccccceeEEEeeeeeeccccccccc-------ccccccccccccccccccccccchhhHHHHH
Confidence 999999999999999999999999999999999988764321 2356778888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCchhHHHHHHHHHHHHHHhhcccceeehhhhhhcCCCCccc-
Q 012458 186 SVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPAN- 264 (463)
Q Consensus 186 s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~- 264 (463)
|.++.++.+....+.+... ......++.....++..+..+.++++.++|+++|||.||+++|++++|||+| ++
T Consensus 151 s~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~--~~~ 224 (409)
T PF01490_consen 151 SILGLFSIFYFIVIVVIYI----ISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDP--SKF 224 (409)
T ss_pred hhhhhhccceeeeeeccee----eeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCC--ccc
Confidence 9999998764312211111 1111111110111111234556789999999999999999999999999987 22
Q ss_pred cchhhhhHHHHHHHHHHHHHHhhhhhhhccCcccccccccccccCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHH
Q 012458 265 QTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWI 344 (463)
Q Consensus 265 ~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~ 344 (463)
+|++++...++.+++++|..+|+.||++||+++++|++.|++ ++++...++++++.++++.+||++.+|.++.+++.+
T Consensus 225 ~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~--~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~ 302 (409)
T PF01490_consen 225 KKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLP--NDDVLIIIARILLVISLLLSYPLQLFPARNSLENLL 302 (409)
T ss_pred cccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCC--CcccccccccccchhhhhhccccccchhHhhhhhhe
Confidence 356699999999999999999999999999999999999999 566899999999999999999999999999999988
Q ss_pred HhhcCCCCccccccccCCCCCCCcCCchhhHHHHHHHHHHHHHHHhhCCchHHHHHHhhhhhhhhhHhhhhhHHHHHHhc
Q 012458 345 CEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMN 424 (463)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~v~~l~Ga~~~~~l~filP~l~~~~~~~ 424 (463)
.++...++...+ .+...++.|+.+|+.++++++++|+.+||++++++++|+++++.++|++|+++|+|.++
T Consensus 303 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~ 373 (409)
T PF01490_consen 303 FKRAASSRDSPK---------NTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFK 373 (409)
T ss_pred eccccccccccc---------cccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhc
Confidence 653000000000 01233478889999999999999999999999999999999999999999999999987
Q ss_pred cchhhHHHH-----HHHHHHHHHHHHHHHHHHHHH
Q 012458 425 IEAWTRKWV-----MLRVFSYVCFIVSTFGLVGSI 454 (463)
Q Consensus 425 ~~~~~~~~~-----~~~~~~~~g~~~~v~g~~~si 454 (463)
+++++.+++ ..+..+++|++.++.|+++++
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i 408 (409)
T PF01490_consen 374 RKRNSFGWWWILSILNWIIIVFGVVLMVFGTYQSI 408 (409)
T ss_pred ccccccceeehhhccceEEEEEeeehhHHhHHHHc
Confidence 665433332 246677788888888888765
No 5
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=4.1e-49 Score=396.98 Aligned_cols=389 Identities=18% Similarity=0.203 Sum_probs=312.5
Q ss_pred ccchHHHHHHHHHhhccccchhhHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCC---CCCC---CCccccHH
Q 012458 26 RTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPD---PEYG---PGRNRSYL 99 (463)
Q Consensus 26 ~~~s~~~a~~~l~~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~---~~~~---~~~~~~y~ 99 (463)
.++|.+++.+++++..+|.|+|+||++|+++||++|++.++++++++.||.+++.+++.+.. ++++ ++...+|.
T Consensus 44 ~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~~ 123 (473)
T PLN03074 44 HGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQWF 123 (473)
T ss_pred CCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999998653211 1111 10124789
Q ss_pred HHHHHHcccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCCc
Q 012458 100 EAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDF 179 (463)
Q Consensus 100 ~l~~~~~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l 179 (463)
|+++..+||+++.+..+...+++++.|+.|.+..++.+..+-. .++.+.|++++.++++|++++|++
T Consensus 124 e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~-------------~~~~~~~~~i~~~v~~~~~~i~sl 190 (473)
T PLN03074 124 EVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYIND-------------NLDKRTWTYIFGACCATTVFIPSF 190 (473)
T ss_pred HHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCC-------------CcCCCeEEeehHHHHHHHHHccCH
Confidence 9999999999999999999999999999999988876665411 256778899999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCchhHHHHHHHHHHHHHHhhcccceeehhhhhhcCC
Q 012458 180 HNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKS 259 (463)
Q Consensus 180 ~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~ 259 (463)
++++++|.+++.++++....+++.++.. +.. ++.++ +...+....+.++++++|||.+|..+|+++++|||
T Consensus 191 ~~l~~~S~ig~~~tl~~av~i~i~~i~~---~~~-----~~~~~-~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~ 261 (473)
T PLN03074 191 HNYRIWSFLGLLMTTYTAWYMTIAALSH---GQV-----EGVKH-SGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWK 261 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCC-----CCCCC-CCchhHHHHHHHHHHHHHHhcccccHHHHHHhccC
Confidence 9999999999887664433333233322 111 11111 11234556778888999999999999999999999
Q ss_pred CCccccchhhhhHHHHHHHHHHHHHHhhhhhhhccCcccc--cccccccccCChHHHHHHHHHHHHHHHhhhhccccchH
Q 012458 260 PPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPG--NLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIF 337 (463)
Q Consensus 260 p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~~~~--~il~n~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~ 337 (463)
| ++|+++...+....+++|..+|+.||+.|||++++ +.+.|+| ++.+..++++++.++++.+||+++.|+.
T Consensus 262 P----~~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp---~~~~~~~~~~~~~i~~~~sy~l~~~p~~ 334 (473)
T PLN03074 262 P----QKFKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLP---RSGWRDAAVILMLIHQFITFGFACTPLY 334 (473)
T ss_pred h----hcccchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCC---CchHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 8 89999999999999999999999999999999764 5576787 3345789999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCccccccccCCCCCCCcCCchhhHHHHHHHHHHHHHHHhhCCchHHHHHHhhhhhhhhhHhhhhhH
Q 012458 338 AHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVE 417 (463)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~v~~l~Ga~~~~~l~filP~l 417 (463)
+..|+.+... + .+....|+.+|+.+++.++++|+.+|+|+.+++++||++++.++|++|++
T Consensus 335 ~~~e~~~~~~--~-----------------~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l 395 (473)
T PLN03074 335 FVWEKAIGVH--D-----------------TKSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSL 395 (473)
T ss_pred HHHHHHhccc--c-----------------cccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988875321 0 22336889999999999999999999999999999999999999999999
Q ss_pred HHHHHhccc-------------hhhHH--HHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhc
Q 012458 418 MYFKQMNIE-------------AWTRK--WVMLRVFSYVCFIV-STFGLVGSIQGIISAKL 462 (463)
Q Consensus 418 ~~~~~~~~~-------------~~~~~--~~~~~~~~~~g~~~-~v~g~~~si~~~~~~~~ 462 (463)
+|++.++++ .+.++ .+.+.++++++.++ .+.|+|+|+++++++..
T Consensus 396 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~ 456 (473)
T PLN03074 396 AHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQID 456 (473)
T ss_pred HHHHHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHhhh
Confidence 999854322 11222 24566666655555 58999999999999875
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-46 Score=367.21 Aligned_cols=401 Identities=17% Similarity=0.288 Sum_probs=324.5
Q ss_pred cccchHHHHHHHHHhhccccchhhHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHH
Q 012458 25 KRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDM 104 (463)
Q Consensus 25 ~~~~s~~~a~~~l~~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~~~ 104 (463)
+++.|...+++|+.|+++|+|++++|++|++.|++.|++++++++.++.++.+++.++..+. +..+|+++++.
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~-------~~~ty~~l~~~ 75 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKS-------GERTYSSLGDL 75 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhc-------CCCCHHHHHHH
Confidence 45678899999999999999999999999999999999999999999999999999998764 22399999999
Q ss_pred HcccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccch-hHHHHHHHHHHhhcCCCccchh
Q 012458 105 CLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTY-YMLIFGAVQLILSQAPDFHNIQ 183 (463)
Q Consensus 105 ~~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~pl~~~~~l~~l~ 183 (463)
.+|+.++....+.+.....| |++|.+.++|.++.+.......++. ..+ +..++. |++....++.|+++.|++.+++
T Consensus 76 ~~g~~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~-~~~-~~~~~~~ill~~~~~i~pLsl~k~l~~Lk 152 (411)
T KOG1305|consen 76 IFGKLGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEG-GSH-YLDRNFLILLVLLFIILPLSLLKNLDSLK 152 (411)
T ss_pred HcCCCceeeehhhHHhhhcc-ceEEEEEEccccchhhhhccccccc-ccc-cccceeEeehHHHHHHHHHHHHHhhhhHH
Confidence 99999977777777777777 7999999999999776643222221 111 233444 6888999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCchhHHHHHHHHHHHHHHhhcccceeehhhhhhcCCCCcc
Q 012458 184 SLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPA 263 (463)
Q Consensus 184 ~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~ 263 (463)
+.|.++..+.+.+.++.+ ++........ ....++.++...+++.+.++++++|||.||+++.++++||||| +
T Consensus 153 ~tS~~s~~~~~~fv~~vv----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~--s 224 (411)
T KOG1305|consen 153 YTSALSLASVVYFVVLVV----YKYFQGPCAL--GRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDR--S 224 (411)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHhccccc--CCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCc--h
Confidence 999999999876555443 3333322100 1111112222233789999999999999999999999999987 5
Q ss_pred ccchhhhhHHHHHHHHHHHHHHhhhhhhhccCcccccccccccccCChH----HHHHHHHHHHHHHHhhhhccccchHHH
Q 012458 264 NQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYW----LIDLANAFIVIHLVGGYQVYSQPIFAH 339 (463)
Q Consensus 264 ~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~----~~~~~~~~~~i~~~~s~pl~~~p~~~~ 339 (463)
+++++++...+...++++|..+|..||+.|||++.+|++.+++...+.. ....++..+.++.+..+|+..+|+|..
T Consensus 225 ~~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~ 304 (411)
T KOG1305|consen 225 VKKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMN 304 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHH
Confidence 6899999999999999999999999999999999999999998532222 358999999999999999999999999
Q ss_pred HHHHHHhhcCCCCccccccccCCCCCCCcCCchhhHHHHHHHHHHHHHHHhhCCchHHHHHHhhhhhhhhhHhhhhhHHH
Q 012458 340 FEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMY 419 (463)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~v~~l~Ga~~~~~l~filP~l~~ 419 (463)
+++.+.+..+.. + .....++++++..++...++.|+++|+++.+++++||+++..++|++|+++|
T Consensus 305 l~~~~~~~~~~~----~-----------~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~y 369 (411)
T KOG1305|consen 305 LDELLFPYQPGL----T-----------SFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYY 369 (411)
T ss_pred HHHHhcccCCCC----C-----------CccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhh
Confidence 888776543321 0 1122556677778888999999999999999999999999999999999999
Q ss_pred HHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012458 420 FKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISA 460 (463)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~g~~~~v~g~~~si~~~~~~ 460 (463)
++.++++ .+.....+...++++.+.++|+..-++++..+
T Consensus 370 l~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~ 408 (411)
T KOG1305|consen 370 LKASKKK--SREPLGALIFLILGVLLSIIGVAVMIYDLLAK 408 (411)
T ss_pred heeeccc--cccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9987752 22334567778899999999999999988765
No 7
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=8.6e-46 Score=336.37 Aligned_cols=405 Identities=19% Similarity=0.206 Sum_probs=339.9
Q ss_pred CCccccchHHHHHHHHHhhccccchhhHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCC--CccccHH
Q 012458 22 PFIKRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGP--GRNRSYL 99 (463)
Q Consensus 22 ~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~--~~~~~y~ 99 (463)
++...|.+-+++.+|++|++-|.=+++||++..+.||. ++..++.++.++.||..+|++|..+.++ .|+ ..+++|.
T Consensus 111 Ge~~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~-dGevVrvRdsYv 188 (524)
T KOG4303|consen 111 GEASEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENGE-DGEVVRVRDSYV 188 (524)
T ss_pred CCCCCccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCCC-CCcEEEeehhHH
Confidence 34456889999999999999999999999999999997 8999999999999999999999876543 343 1477999
Q ss_pred HHHHHHcccc-cchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCC
Q 012458 100 EAVDMCLGKT-NAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPD 178 (463)
Q Consensus 100 ~l~~~~~G~~-g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~ 178 (463)
++++..++++ |...+.+.+.+.+..+|+.|++..+|.++.-++.. ..+.+-|+++....++|.+++|+
T Consensus 189 aIA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~-----------svd~~sWm~i~~a~LLpc~FLk~ 257 (524)
T KOG4303|consen 189 AIADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGL-----------SVDKASWMMITSASLLPCSFLKD 257 (524)
T ss_pred HHHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCC-----------CccccchhhhhhHHHhhhHHHHH
Confidence 9999999986 55899999999999999999999999998866542 24577899999999999999999
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCchhHHHHHHHHHHHHHHhhcccceeehhhhhhcC
Q 012458 179 FHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLK 258 (463)
Q Consensus 179 l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~ 258 (463)
++..+.+|.+..++-++.-.+++.+|+.+.- ++.+ +..+-..+..+++..+|+++|+|..|..+|.+..+|+
T Consensus 258 Lk~VS~lSf~ct~sH~viN~i~v~YCLs~~~-----dW~w---skv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~ 329 (524)
T KOG4303|consen 258 LKIVSRLSFFCTISHLVINLIMVLYCLSFVS-----DWSW---SKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMK 329 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hccc---eeEEEEEEcccCceEEEEEEEeeeceeeccccccccC
Confidence 9999999988888888777777777765432 2221 1111112233566789999999999999999999999
Q ss_pred CCCccccchhhhhHHHHHHHHHHHHHHhhhhhhhccCcccccccccccccCChHHHHHHHHHHHHHHHhhhhccccchHH
Q 012458 259 SPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFA 338 (463)
Q Consensus 259 ~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~ 338 (463)
+| .+|.-.+.++-+...++-..+|..||++|++.|+..|++|+| ++-+...+++++++..+.|||+-.+...+
T Consensus 330 ~p----s~Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp---~qsfk~~VN~fLV~KALLSYPLPfyAAve 402 (524)
T KOG4303|consen 330 NP----SQFNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLP---NQSFKILVNLFLVVKALLSYPLPFYAAVE 402 (524)
T ss_pred Ch----hHheeeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCC---ccchhhhhhHHHHHHHHHcCCchHHHHHH
Confidence 98 899999999999999999999999999999999999999998 77789999999999999999998888888
Q ss_pred HHHHHHHhhcCCCCccccccccCCCCC--CCcCCchhhHHHHHHHHHHHHHHHhhCCchHHHHHHhhhhhhhhhHhhhhh
Q 012458 339 HFEKWICEKFPENGFLNNEFFLKPPLM--PAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPV 416 (463)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~v~~l~Ga~~~~~l~filP~ 416 (463)
.+|+-+....|+.++ |.+ |+.+.+-+-..+|..+++.+.+.|+++|.|..+++++|++.++.++|+.|+
T Consensus 403 lLe~nlF~g~p~t~F---------pscys~Dg~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~ 473 (524)
T KOG4303|consen 403 LLENNLFLGYPQTPF---------PSCYSPDGSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPA 473 (524)
T ss_pred HHHHhhhcCCCCCCC---------ceeeCCCcchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHH
Confidence 888877765554332 221 233333445567899999999999999999999999999999999999999
Q ss_pred HHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 012458 417 EMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS 463 (463)
Q Consensus 417 l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~g~~~si~~~~~~~~~ 463 (463)
+||++++.+.....+......+++.|....+.|.|-|...+++.+++
T Consensus 474 lFHl~ik~~~L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~~ 520 (524)
T KOG4303|consen 474 LFHLYIKEKTLNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAINS 520 (524)
T ss_pred HHHHHHHHHhhhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHHHhc
Confidence 99999876554444555678888999999999999999999987754
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=3.7e-33 Score=277.42 Aligned_cols=392 Identities=16% Similarity=0.183 Sum_probs=296.4
Q ss_pred cccchHHHHHHHHHhhccccchhhHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHH
Q 012458 25 KRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDM 104 (463)
Q Consensus 25 ~~~~s~~~a~~~l~~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~~~ 104 (463)
+.+.+..++++++.++++|+|+|++|++++..|+.++++++++.+.+++++.+++.|+..+.+. ++.++.+++++
T Consensus 6 ~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~-----~~~~~~~~~~~ 80 (415)
T COG0814 6 KKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPN-----GKASITSLVED 80 (415)
T ss_pred cCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----CcccHHHHHHH
Confidence 4567888999999999999999999999999999999999999999999999999999876521 22499999999
Q ss_pred HcccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCCccchhh
Q 012458 105 CLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQS 184 (463)
Q Consensus 105 ~~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~ 184 (463)
.+||+++++.++.+.+.+|+.+.+|.+..+|.+++.+++....+ ...+....++++.++.++++.++...++.
T Consensus 81 ~~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~-------~~~r~~~~lif~~~~~~l~~~~~~~~lk~ 153 (415)
T COG0814 81 YLGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLN-------PLPRKLGSLIFALVLAFLSWLGTLAVLKI 153 (415)
T ss_pred HhCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccC-------CcchHHHHHHHHHHHHHHHHhchhHHHHH
Confidence 99999999999999999999999999999999999987632110 15677888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCchhHHHHHHHHHHHHHHhhcccceeehhhhhhcCCCCccc
Q 012458 185 LSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPAN 264 (463)
Q Consensus 185 ~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~ 264 (463)
.+.+....+.+..+. +.+....-+... ....|..+ ...+.++..++|+++|||+||+++|+++++||+++ +
T Consensus 154 ts~l~~~~v~~~~~l----~~~~~~~~~~~~--l~~~~~~~-~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~--~ 224 (415)
T COG0814 154 TSLLVFGKVIYLVLL----VVYLIPHWNPAN--LFALPSAS-QSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNS--K 224 (415)
T ss_pred HHHHHHHHHHHHHHH----HHHHhcccCHHH--Hhcccccc-hhhHHHHHHHhhHHHhhhhCCccchHHHHHhccch--h
Confidence 999988887644333 233222211110 11111111 24556788999999999999999999999999862 3
Q ss_pred cchhhhhHHHHHHHHHHHHHHhhhhhhhccCccccccccccccc-----------CChHHHHHHHHHHHHHHHhhhhccc
Q 012458 265 QTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFY-----------EPYWLIDLANAFIVIHLVGGYQVYS 333 (463)
Q Consensus 265 ~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~-----------~~~~~~~~~~~~~~i~~~~s~pl~~ 333 (463)
++.+|+...+..+..++|..+++.+|..+|+.+.++++++.++. ..+......+++..+.+.++|--+.
T Consensus 225 ~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~ 304 (415)
T COG0814 225 KAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVY 304 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCch
Confidence 35999999999999999999999999999999999999999731 1233555666666666767766666
Q ss_pred cchHHHHHHHHHhhcCCCCccccccccCCCCCCCcCCchhh-H-HHHHHHHHHHHHHHhhCCchHHHHHHhhhhhhhhhH
Q 012458 334 QPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLR-L-CFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLT 411 (463)
Q Consensus 334 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~-~~~~~~~~~~~~ia~~vp~~~~v~~l~Ga~~~~~l~ 411 (463)
...+|.+++.++.+ +++ .+ ++..+.+ . ......+......+...+..+.+++.+|+.....+.
T Consensus 305 lg~~~~~~~~~~~~--~~~-~~------------r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll 369 (415)
T COG0814 305 LGLFEGLADLFKKS--NSK-PG------------RKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALL 369 (415)
T ss_pred hhHHHhhhHHHHhc--cCc-cc------------chhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Confidence 66777777776541 000 00 1111222 2 223344555788888889999999999999999999
Q ss_pred hhhhhHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012458 412 IYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVG 452 (463)
Q Consensus 412 filP~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~g~~~ 452 (463)
++.|...+.+....+++..++....+++++|+..+....+.
T Consensus 370 ~~~p~~~~~~~~~~~~~~g~~~~~~~v~~~Gi~~~~~~~~~ 410 (415)
T COG0814 370 FIKPRKLIYKLPALKVYGGNFLLLLLVLLFGILVILSPFLA 410 (415)
T ss_pred HHHHHHhcCCCCceeecCCCchhHHHHHHHHHHHHHHHHHH
Confidence 99999888776544433322235566667777666655543
No 9
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.95 E-value=2.9e-25 Score=219.44 Aligned_cols=370 Identities=16% Similarity=0.166 Sum_probs=263.8
Q ss_pred cchHHHHHHHHHhhccccchhhHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHHHc
Q 012458 27 TGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCL 106 (463)
Q Consensus 27 ~~s~~~a~~~l~~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~~~~~ 106 (463)
+.+.+++.+.+..+.+|+|+|+||.+.+..|..++++.+++++.++++|..++.|...+.+ +..++.+++++.+
T Consensus 2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~------~~~~~~~~a~~~l 75 (394)
T PF03222_consen 2 NNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTP------EGSSLTSMAEKYL 75 (394)
T ss_pred CchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------CCCCHHHHHHHHh
Confidence 5678899999999999999999999999999999999999999999999999999876532 3459999999999
Q ss_pred ccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCCccchhhHH
Q 012458 107 GKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLS 186 (463)
Q Consensus 107 G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s 186 (463)
||+|+++..+...+..|+.+.+|..-.++.+++.+..... ...+++.-.+++.++...+.... .+...+.+
T Consensus 76 G~~g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~--------~~~~~~~~~~~f~~i~~~iv~~g-~~~v~~~n 146 (394)
T PF03222_consen 76 GKKGGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLG--------TDLSPWLSSLLFTIIFGGIVYFG-TKAVDRIN 146 (394)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcC--------CCCcHHHHHHHHHHHHHHHHHhh-HHHHHHHH
Confidence 9999999999999999999999999999999999876321 12334344444444443333332 22333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCC-CchhHHHHHHHHHHHHHHhhcccceeehhhhhhcCCCCcccc
Q 012458 187 VIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVST-TTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQ 265 (463)
Q Consensus 187 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~ 265 (463)
.+-+...+ ........+ ...+ .+.++..+ .+....+...+.++|++++||..|+++|++.+.+++. +|
T Consensus 147 ~~lv~~~i---~~~~~l~~~-~~p~----~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d---~~ 215 (394)
T PF03222_consen 147 RVLVFGMI---ISFIILVVY-LIPH----WNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGD---PK 215 (394)
T ss_pred HHHHHHHH---HHHHHHHHH-Hhhh----cCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCcc---HH
Confidence 32222222 111112221 2211 11111111 1123445667899999999999999999999999963 58
Q ss_pred chhhhhHHHHHHHHHHHHHHhhhhhh-----------hccCccc--ccccccccccCChHHHHHHHHHHHHHHHhhhhcc
Q 012458 266 TMKKASTMSIITTTIFYLFCGGFGYA-----------AFGDNTP--GNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVY 332 (463)
Q Consensus 266 ~~~~~~~~a~~~~~~~y~~~g~~gy~-----------~fg~~~~--~~il~n~~~~~~~~~~~~~~~~~~i~~~~s~pl~ 332 (463)
|.+|++..+..+..++|++.-+..-. .-+++.. ...+.+.. ++.+.....+++-.+++.+||--.
T Consensus 216 k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~i~~~~~~fa~~Ai~TSFlGv 293 (394)
T PF03222_consen 216 KIRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVS--GSPWISILGSIFAFFAIATSFLGV 293 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhc--CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999865333222 1111111 12233333 467778889999999999999999
Q ss_pred ccchHHHHHHHHHhhcCCCCccccccccCCCCCCCcCCchhhHHHHHHHHHHHHHHHhhCCc-hHHHHHHhhhhhhhhhH
Q 012458 333 SQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPY-FNQVLGVIGGVIFWPLT 411 (463)
Q Consensus 333 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~-~~~v~~l~Ga~~~~~l~ 411 (463)
...++|.+++.++.+ + ....|........++++++|...|+ |...+++.| .+.+++.
T Consensus 294 ~lgl~d~l~d~~k~~--~-------------------~~~~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~ 351 (394)
T PF03222_consen 294 YLGLFDFLADLFKLK--N-------------------NSSGRLKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILL 351 (394)
T ss_pred HHHHHHHHHHHHcCC--c-------------------cccchHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHH
Confidence 999999999887541 1 1145555566677889999999998 889999999 8889999
Q ss_pred hhhhhHHHHHHhccchhh-----HHHHHHHHHHHHHHHHH
Q 012458 412 IYFPVEMYFKQMNIEAWT-----RKWVMLRVFSYVCFIVS 446 (463)
Q Consensus 412 filP~l~~~~~~~~~~~~-----~~~~~~~~~~~~g~~~~ 446 (463)
.++|+++.+|.|++++.. ..+.....++++|+...
T Consensus 352 ~ilP~~m~~~~r~~~~~~~~~~~gg~~~l~~~~~~~i~ii 391 (394)
T PF03222_consen 352 GILPALMVWKARKRKPKQPYRVPGGNFTLLLVIIFGILII 391 (394)
T ss_pred HHHHHHHHHHHHcccCCCCeEEeCcHHHHHHHHHHHHHHH
Confidence 999999999987554321 12233444455554443
No 10
>PRK10483 tryptophan permease; Provisional
Probab=99.95 E-value=2.1e-25 Score=218.16 Aligned_cols=355 Identities=13% Similarity=0.066 Sum_probs=259.2
Q ss_pred CccccchHHHHHHHHHhhccccchhhHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHH
Q 012458 23 FIKRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAV 102 (463)
Q Consensus 23 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~ 102 (463)
.++++++.+++.+.+..+++|+|+|+||.+.++.|++++++++++++..+.||..++.|...+.+ +..++..++
T Consensus 6 ~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~------~g~~~~tma 79 (414)
T PRK10483 6 TTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYR------IGSSFDTIT 79 (414)
T ss_pred cccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CCCCHHHHH
Confidence 34677899999999999999999999999999999999999999999999999999999876542 345999999
Q ss_pred HHHcccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCCccch
Q 012458 103 DMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNI 182 (463)
Q Consensus 103 ~~~~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l 182 (463)
++.+||+|+++..++..+..|+.+.+|+.-.++.+.+.+++... ..+++.-.++++++.-.+.+.. .+..
T Consensus 80 ~~~LG~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~~---------~i~~~~~~llF~~~~~~iv~~g-t~~v 149 (414)
T PRK10483 80 KDLLGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMSL---------NVPARAAGFGFALLVAFVVWLS-TKAV 149 (414)
T ss_pred HHHcChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCC---------CCcHHHHHHHHHHHHHHHHHhh-hhHH
Confidence 99999999999999999999999999999999999998864110 1234444556666665555543 2555
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCchhHHHHHHHHHHHHHHhhcccceeehhhhhhcCCCCc
Q 012458 183 QSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPP 262 (463)
Q Consensus 183 ~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~ 262 (463)
.+++.+-....+...+ ..+.....+-. .....+.+ ......+...+.++|++.+||+.|+++|++.+.+++.
T Consensus 150 d~~n~~l~~~~i~~f~----~~~~~l~~~i~-~~~L~~~~-~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d-- 221 (414)
T PRK10483 150 SRMTAIVLGAKVITFF----LTFGSLLGHVQ-PATLFNVA-ESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKD-- 221 (414)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHhhcC-HHHHhccc-cccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcC--
Confidence 5555433332221111 11121222111 01111111 0111223457789999999999999999999999863
Q ss_pred cccchhhhhHHHHHHHHHHHHHHhhhhhhhc-----------cCcccccccccccc-cCChHHHHHHHHHHHHHHHhhhh
Q 012458 263 ANQTMKKASTMSIITTTIFYLFCGGFGYAAF-----------GDNTPGNLLTGFGF-YEPYWLIDLANAFIVIHLVGGYQ 330 (463)
Q Consensus 263 ~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~f-----------g~~~~~~il~n~~~-~~~~~~~~~~~~~~~i~~~~s~p 330 (463)
.||.+|++..+..+..++|+..=..+...- +++. +..+..+.. .++.+...+.+++..+.+.+||-
T Consensus 222 -~~kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni-~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFl 299 (414)
T PRK10483 222 -PKTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNI-DVLVQALSGVLNSRSLDLLLVVFSNFAVASSFL 299 (414)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCh-HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999999996433333322 2222 111122221 13456678889999999999999
Q ss_pred ccccchHHHHHHHHHhhcCCCCccccccccCCCCCCCcCCchhhHHHHHHHHHHHHHHHhhCCc-hHHHHHHhhhhhhhh
Q 012458 331 VYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPY-FNQVLGVIGGVIFWP 409 (463)
Q Consensus 331 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~-~~~v~~l~Ga~~~~~ 409 (463)
-....++|.+.+.++.+ + ....|.....+..++++++|++.|+ |-..++..|.. +.+
T Consensus 300 Gv~LGL~d~l~D~~k~~--~-------------------~~~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~-~~i 357 (414)
T PRK10483 300 GVTLGLFDYLADLFGFD--D-------------------SAMGRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLA-ATI 357 (414)
T ss_pred HHHHHHHHHHHHHhCCC--C-------------------ccccceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHH-HHH
Confidence 99999999999987542 1 0134555556788899999999998 89999999976 678
Q ss_pred hHhhhhhHHHHHHhcc
Q 012458 410 LTIYFPVEMYFKQMNI 425 (463)
Q Consensus 410 l~filP~l~~~~~~~~ 425 (463)
+.-++|+++.++.||+
T Consensus 358 l~~ilP~lM~~~~Rk~ 373 (414)
T PRK10483 358 WAAIVPALLARASRKR 373 (414)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8899999999998865
No 11
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.95 E-value=4.5e-25 Score=215.63 Aligned_cols=381 Identities=12% Similarity=0.071 Sum_probs=266.3
Q ss_pred cccchHHHHHHHHHhhccccchhhHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHH
Q 012458 25 KRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDM 104 (463)
Q Consensus 25 ~~~~s~~~a~~~l~~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~~~ 104 (463)
++|.+.+.+.+.+..+++|+|+|+||.+.++.|+.++++++++++..+.||..++.|+..+.+ +..++..++++
T Consensus 6 ~~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~------~g~~l~tma~~ 79 (415)
T PRK09664 6 EKKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYP------VGSSFNTITKD 79 (415)
T ss_pred hhccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------CCCCHHHHHHH
Confidence 344588889999999999999999999999999999999999999999999999999876542 34599999999
Q ss_pred HcccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCCccchhh
Q 012458 105 CLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQS 184 (463)
Q Consensus 105 ~~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~ 184 (463)
.+||+|+++..++..+..|+.+.+|+.-.++.+++.++... . ...+++...++++++.-++.+... +...+
T Consensus 80 ~LG~~g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~-~-------~~i~~~~~~llF~~~~~~~v~~gt-~~vd~ 150 (415)
T PRK09664 80 LIGNTWNIISGITVAFVLYILTYAYISANGAIISETISMNL-G-------YHANPRIVGICTAIFVASVLWISS-LAASR 150 (415)
T ss_pred HcChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhc-c-------CCCcHHHHHHHHHHHHHHHHHhch-hHHHH
Confidence 99999999999999999999999999999999999876411 0 012333444566666666655442 44444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCc-hhHHHHHHHHHHHHHHhhcccceeehhhhhhcCCCCcc
Q 012458 185 LSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTT-SIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPA 263 (463)
Q Consensus 185 ~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~ 263 (463)
.+-+-....+ +.++..+.....+-.. ....+.+... ........+.++|++.+||+.|+++|++.+.+++.
T Consensus 151 ~nr~l~~~~i----i~f~~~~~~l~~~i~~-~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d--- 222 (415)
T PRK09664 151 ITSLFLGLKI----ISFVIVFGSFFFQVDY-SILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKR--- 222 (415)
T ss_pred HHHHHHHHHH----HHHHHHHHHHhhcccH-HHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCcc---
Confidence 4432222211 1111212212211100 0111111001 01112346789999999999999999999999853
Q ss_pred ccchhhhhHHHHHHHHHHHHH--Hhhhhh---------hhccCcccccccccccccCChHHHHHHHHHHHHHHHhhhhcc
Q 012458 264 NQTMKKASTMSIITTTIFYLF--CGGFGY---------AAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVY 332 (463)
Q Consensus 264 ~~~~~~~~~~a~~~~~~~y~~--~g~~gy---------~~fg~~~~~~il~n~~~~~~~~~~~~~~~~~~i~~~~s~pl~ 332 (463)
.++.+|++..+..+..++|.. ..+.|- ...|++....+..-....+..+...+.+++..+.+.+||--.
T Consensus 223 ~~~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv 302 (415)
T PRK09664 223 KDKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGV 302 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHH
Confidence 488999999999999998863 222231 122323322111111111356788899999999999999999
Q ss_pred ccchHHHHHHHHHhhcCCCCccccccccCCCCCCCcCCchhhHHHHHHHHHHHHHHHhhCCc-hHHHHHHhhhhhhhhhH
Q 012458 333 SQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPY-FNQVLGVIGGVIFWPLT 411 (463)
Q Consensus 333 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~-~~~v~~l~Ga~~~~~l~ 411 (463)
...++|.+.+.++.+ + ....|.....+.++++++.|++.|+ |-..++..|.. ++++.
T Consensus 303 ~LGL~D~l~D~~~~~--~-------------------~~~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~-~~il~ 360 (415)
T PRK09664 303 TLGLFDYLADLFKID--N-------------------SHGGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLC-ATIWA 360 (415)
T ss_pred HHHHHHHHHHHhCCC--C-------------------ccccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHH
Confidence 999999999987542 1 1134555566788899999999998 89999999986 56999
Q ss_pred hhhhhHHHHHHhcc-chh----hHHHHHHHHHHHHHHHHHHHHH
Q 012458 412 IYFPVEMYFKQMNI-EAW----TRKWVMLRVFSYVCFIVSTFGL 450 (463)
Q Consensus 412 filP~l~~~~~~~~-~~~----~~~~~~~~~~~~~g~~~~v~g~ 450 (463)
-++|+++.+|.||+ ... ...+......+.+|++..+...
T Consensus 361 ~ilP~lM~~~~Rk~~~~~~y~v~GG~~~l~~~~~~g~~ii~~~~ 404 (415)
T PRK09664 361 VIIPAVLAIKARKKFPNQMFTVWGGNLIPAIVILFGITVILCWF 404 (415)
T ss_pred HHHHHHHHHHHhcccCCCCceeeCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999998865 211 1222345566666766655443
No 12
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.94 E-value=2e-24 Score=212.36 Aligned_cols=373 Identities=12% Similarity=0.113 Sum_probs=261.9
Q ss_pred chHHHHHHHHHhhccccchhhHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHHHcc
Q 012458 28 GTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLG 107 (463)
Q Consensus 28 ~s~~~a~~~l~~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~~~~~G 107 (463)
++.+++.+.+..+.+|+|+|+||.+.+..|++++++++++++.+..|+.+++.|+..+.+ +..++.+++++.+|
T Consensus 3 ~~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~------~~~~~~~~a~~~LG 76 (403)
T PRK15132 3 NRTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVP------ADTGLGTLAKRYLG 76 (403)
T ss_pred ccHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------CCCCHHHHHHHHhC
Confidence 377899999999999999999999999999999999999999999999999999755421 33589999999999
Q ss_pred cccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCCccchhhHHH
Q 012458 108 KTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSV 187 (463)
Q Consensus 108 ~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~ 187 (463)
|+|+++..+...+..|..+.+|..-.++.+.+.++....+ ..+.....+++.++.-...+.. .+...+++-
T Consensus 77 ~~g~~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~--------~i~~~~~~l~F~~~~~~iv~~g-~~~v~~~n~ 147 (403)
T PRK15132 77 RYGQWLTGFSMMFLMYALTAAYISGAGELLASSISDWTGI--------SMSPTAGVLLFTLVAGGVVCVG-TSSVDLFNR 147 (403)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccC--------CCChHHHHHHHHHHHHHHHhcc-HHHHHHHHH
Confidence 9999999999999999999999999999998887653211 1223334444444433333332 233333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCchhHHHHHHHHHHHHHHhhcccceeehhhhhhcCCCCccccch
Q 012458 188 IAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTM 267 (463)
Q Consensus 188 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~ 267 (463)
+-+...+ +..+..+.+ ...+ .+..+..+.+... ...+.++|++.+||+.|+++|++.+.+++. .+|.
T Consensus 148 ~L~~~~i---i~~~~~~~~-l~p~----~~~~~L~~~~~~~--~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~---~~~~ 214 (403)
T PRK15132 148 FLFSAKI---IFLVVMLAL-MMPH----IHKVNLLTLPLQQ--GLALSAIPVIFTSFGFHGSVPSIVSYMGGN---IRKL 214 (403)
T ss_pred HHHHHHH---HHHHHHHHH-HHHh----cCHHHHhcCCccc--cHHHHHHHHHHHHhhCCcccHHHHHHhCcC---HHHH
Confidence 2222111 111111111 2211 1111111100000 137789999999999999999999999863 5899
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhhhccCcc-----c-----ccccccccc-cCChHHHHHHHHHHHHHHHhhhhccccch
Q 012458 268 KKASTMSIITTTIFYLFCGGFGYAAFGDNT-----P-----GNLLTGFGF-YEPYWLIDLANAFIVIHLVGGYQVYSQPI 336 (463)
Q Consensus 268 ~~~~~~a~~~~~~~y~~~g~~gy~~fg~~~-----~-----~~il~n~~~-~~~~~~~~~~~~~~~i~~~~s~pl~~~p~ 336 (463)
+|++..+..+..++|+..=..+...-+.+. + ++++..+.. .+..+...+++++..+.+.+||--....+
T Consensus 215 ~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl 294 (403)
T PRK15132 215 RWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGL 294 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999966555554443321 1 122333221 13567788899999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCccccccccCCCCCCCcCCchhhHHHHHHHHHHHHHHHhhCCc-hHHHHHHhhhhhhhhhHhhhh
Q 012458 337 FAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPY-FNQVLGVIGGVIFWPLTIYFP 415 (463)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~-~~~v~~l~Ga~~~~~l~filP 415 (463)
+|.+.+.++++ + ....|........++++++|.+.|+ |...+++.|. +.+++.+++|
T Consensus 295 ~d~l~d~~~~~--~-------------------~~~~r~~~~~l~flppli~a~~~P~~F~~al~~aG~-~~ail~~ilP 352 (403)
T PRK15132 295 FDYLADLFQRR--N-------------------TVGGRLQTGLITFLPPLAFALFYPRGFVMALGYAGV-ALAVLALLLP 352 (403)
T ss_pred HHHHHHHHccC--c-------------------cccCCchhehhhHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 99999987542 0 0133555667788899999999998 8889999886 4689999999
Q ss_pred hHHHHHHhccc---hhh--HHHHHHHHHHHHHHHHHHHHH
Q 012458 416 VEMYFKQMNIE---AWT--RKWVMLRVFSYVCFIVSTFGL 450 (463)
Q Consensus 416 ~l~~~~~~~~~---~~~--~~~~~~~~~~~~g~~~~v~g~ 450 (463)
+++.+|.|+++ +++ ......++.+++|++..+...
T Consensus 353 ~~m~~~~r~~~~~~~y~v~gg~~~~~~v~~~G~~~i~~~~ 392 (403)
T PRK15132 353 SLLVWQSRKQNPQAGYRVKGGRPALALVFLCGIAVIGIQF 392 (403)
T ss_pred HHHHHHHhhcCCCCCccCCCChHHHHHHHHHHHHHHHHHH
Confidence 99999987644 221 123345666666666555443
No 13
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.92 E-value=7.8e-24 Score=210.96 Aligned_cols=345 Identities=12% Similarity=0.063 Sum_probs=250.9
Q ss_pred HHHHHhhccccchhhHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHHHcccccchh
Q 012458 34 VAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWA 113 (463)
Q Consensus 34 ~~~l~~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~g~~~ 113 (463)
...++++++|+|++++|..+++.|...+++.+++.+..+.++...+.|...+.+ +..++.+.+++.+||+++++
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p------~~~~~~~~~~~~~G~~~g~~ 76 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYP------GGASFNTIAKDLLGKTGNII 76 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------CCCCHHHHHHHHhCHHHHHH
Confidence 345678999999999999999999999999999999999999999999876532 23499999999999999999
Q ss_pred hHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCCccchhhHHHHHHHHH
Q 012458 114 CSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMS 193 (463)
Q Consensus 114 ~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~ 193 (463)
..+...+.++..+.+|.+..++.+..+++..... ..+++...+++.+++.++. .+..+..++++.+.+...
T Consensus 77 ~~~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~--------~~~~~~~~~~~~~v~~~l~-~~G~~~~~~v~~i~~~~~ 147 (381)
T TIGR00837 77 AGLSLLFVLYILTYAYISGGGSILSRLIGEYFGF--------PWSARAIVLIFTVLFGSFV-WLSTSAVDRITRVLIFGK 147 (381)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCC--------CccHHHHHHHHHHHHHHHH-HhchhHHHHHHHHHHHHH
Confidence 9999999999999999999999999887642111 1223333444444444444 345677777777666665
Q ss_pred HHHHHHHHHHHHHHHhcCCccccccccCCCCchhHHHHHHHHHHHHHHhhcccceeehhhhhhcCCCCccccchhhhhHH
Q 012458 194 FAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTM 273 (463)
Q Consensus 194 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~ 273 (463)
+...+..++....+ -+..+ . .|.......+.+...+++...++|++|.+++++.++++++ +||.+|+...
T Consensus 148 l~~l~~~ii~~~~~---~~~~~--~--~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~---~k~i~raii~ 217 (381)
T TIGR00837 148 IIAFALVFSGLLPH---VKGDL--L--LDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGN---VKKVKKSILI 217 (381)
T ss_pred HHHHHHHHHHHHhh---ccHHH--H--hcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccC---HHHHHHHHHH
Confidence 43322222222211 11100 1 0100001234567889999999999999999999999864 5899999999
Q ss_pred HHHHHHHHHHHHhhhhhhhccCcccccccc----------cccc-cCChHHHHHHHHHHHHHHHhhhhccccchHHHHHH
Q 012458 274 SIITTTIFYLFCGGFGYAAFGDNTPGNLLT----------GFGF-YEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEK 342 (463)
Q Consensus 274 a~~~~~~~y~~~g~~gy~~fg~~~~~~il~----------n~~~-~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~ 342 (463)
+..+++++|..+........+.+.-.+... .+.. .++.+...++.++..+.+++++.-.....+|.+.+
T Consensus 218 g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~ 297 (381)
T TIGR00837 218 GSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLAD 297 (381)
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988776665554432111111 1110 12445678889999999999999999999999888
Q ss_pred HHHhhcCCCCccccccccCCCCCCCcCCchhhHHHHHHHHHHHHHHHhhCCchH-HHHHHhhhhhhhhhHhhhhhHHHHH
Q 012458 343 WICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFN-QVLGVIGGVIFWPLTIYFPVEMYFK 421 (463)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~-~v~~l~Ga~~~~~l~filP~l~~~~ 421 (463)
.++++ + . +.+|+....+..+++.++|.+.|+.. ..++..| ++++.+.+++|++++++
T Consensus 298 ~~~~~--~-----------------~--~~~~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~ 355 (381)
T TIGR00837 298 LFKFD--D-----------------S--KKGRFKTGLLTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWK 355 (381)
T ss_pred HhCCC--c-----------------c--cCCCchhhhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 76542 0 0 12355556667788999999999865 9999999 88889999999999999
Q ss_pred Hhcc
Q 012458 422 QMNI 425 (463)
Q Consensus 422 ~~~~ 425 (463)
.||+
T Consensus 356 ~r~~ 359 (381)
T TIGR00837 356 ARKK 359 (381)
T ss_pred HHhc
Confidence 8765
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.91 E-value=1e-21 Score=192.02 Aligned_cols=381 Identities=11% Similarity=0.073 Sum_probs=257.9
Q ss_pred HHHHHHhhccccchhhHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHHHcccccch
Q 012458 33 AVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAW 112 (463)
Q Consensus 33 a~~~l~~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~g~~ 112 (463)
....+..+.+|+|+|+||-.....|..++++.+++++.+++++...+.|...+.++ +..++.+++++.+||+|+.
T Consensus 24 W~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~-----~~~~i~~v~~~~lG~~g~~ 98 (443)
T PRK13629 24 WTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSN-----PSGNITETVEEHFGKTGGV 98 (443)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-----CCCCHHHHHHHHcChhHHH
Confidence 36899999999999999999999999999999999999999999999997654322 3459999999999999999
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCCccchhhHHHHHHHH
Q 012458 113 ACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVM 192 (463)
Q Consensus 113 ~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~ 192 (463)
+..++..+..|..+.+|...+.+.+++.+.+.. + .+ ..++....+++.+++.......+ +...+++ .++
T Consensus 99 i~~ilYff~ly~ll~aY~~~itn~l~sfl~~ql-~-~~-----~~~r~l~slifv~~l~~iv~~G~-~~v~kv~---~~L 167 (443)
T PRK13629 99 VITFLYFFAICPLLWIYGVTITNTFMTFWENQL-G-FA-----PLNRGFVALFLLLLMAFVIWFGK-DLMVKVM---SYL 167 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-C-cC-----CccHHHHHHHHHHHHHHHHHhhH-HHHHHHH---HHH
Confidence 999999999999999999999999988665421 1 00 12344555555555555555432 3333333 333
Q ss_pred HHHHHHHHHHHHHHHHhcCCccccccccCC-----CCchhHHHHHHHHHHHHHHhhcccceeehhhhhhcCCC-------
Q 012458 193 SFAYSFIGFGLGVAKVIGNGFVMGSFSGVS-----TTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSP------- 260 (463)
Q Consensus 193 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p------- 260 (463)
......+.+..+++-..+=+..+ ....+ +.........++.++|++++||+.|+++|+....+|+.
T Consensus 168 v~~~i~~l~~l~~~LiP~w~~~~--L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~ 245 (443)
T PRK13629 168 VWPFIASLVLISLSLIPYWNSAV--IDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGR 245 (443)
T ss_pred HHHHHHHHHHHHHHHHHHcCHHH--HhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhcccccc
Confidence 22222222223333222111000 11111 00011112457789999999999999999999995432
Q ss_pred CccccchhhhhHHHHHHHHHHHHHHhhhhhhhccCcc-------cccccc---c-cccc-CC-----hHHHHHHHHHHHH
Q 012458 261 PPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT-------PGNLLT---G-FGFY-EP-----YWLIDLANAFIVI 323 (463)
Q Consensus 261 ~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~~-------~~~il~---n-~~~~-~~-----~~~~~~~~~~~~i 323 (463)
+..++|.+|++..+..+..++|+..-+.+-..-+++. ..+++. | ++.. +. ........++..+
T Consensus 246 ~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~ 325 (443)
T PRK13629 246 DFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALV 325 (443)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHH
Confidence 1125899999999999999999987777776665433 112121 2 2210 11 4567788888889
Q ss_pred HHHhhhhccccchHHHHHHHHHhhcCCCCccccccccCCCCCCCcCCchhhHHHHHHHHHHHHHHHhhCCchHHHHHHhh
Q 012458 324 HLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIG 403 (463)
Q Consensus 324 ~~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~v~~l~G 403 (463)
++.+||--+...++|.++.+..+..... .++ + ...+..+......+++.++.++..-|++-..++-.|
T Consensus 326 AI~TSFlGv~LGl~E~l~gl~~~~~~~~--~~~----~------~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~ 393 (443)
T PRK13629 326 AIFKSFFGHYLGTLEGLNGLILKFGYKG--DKT----K------VSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMG 393 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccc----c------cCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhh
Confidence 9999999999999999998884310000 000 0 111244555566777889999999999999999887
Q ss_pred hhhhhhhHhhhhhHHHHHHhccchhhHHHHHHHHHHHHHHH
Q 012458 404 GVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFI 444 (463)
Q Consensus 404 a~~~~~l~filP~l~~~~~~~~~~~~~~~~~~~~~~~~g~~ 444 (463)
+-....+.|++|...-.|...-++.+.+ ..++++.+.|++
T Consensus 394 gPiia~il~l~P~y~i~kvp~l~~yr~~-~~n~fv~~~Gl~ 433 (443)
T PRK13629 394 APIIASLLCLLPMYAIRKAPSLAKYRGR-LDNVFVTVIGLL 433 (443)
T ss_pred hHHHHHHHHHHHHHHHHccHHHHHhCCC-chhHHHHHHHHH
Confidence 7777899999999998886543333222 234555555544
No 15
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.87 E-value=6e-20 Score=181.31 Aligned_cols=363 Identities=11% Similarity=0.053 Sum_probs=249.6
Q ss_pred HHHHHHHHhhccccchhhHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHHHccccc
Q 012458 31 WTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTN 110 (463)
Q Consensus 31 ~~a~~~l~~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~g 110 (463)
..-.+.+.++++|+|+|++|...++.||+..++..++...+++++..++.|.....+ . +..++.|++++.|||++
T Consensus 6 ~~w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~-~----p~~~i~~~~~~~fGk~~ 80 (397)
T TIGR00814 6 TGWMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSK-N----PCEDITEVVEEHFGKNW 80 (397)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-C----CCCCHHHHHHHHcCHHH
Confidence 345889999999999999999999999999999999999999999999999753321 1 24599999999999999
Q ss_pred chhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCCccchhhHHHHHH
Q 012458 111 AWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAA 190 (463)
Q Consensus 111 ~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 190 (463)
+.+..+...+..+..+.+|....++.+.+.+...... + .+.+....+..++++-.......+...+++-+-+
T Consensus 81 G~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~-~-------~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~ 152 (397)
T TIGR00814 81 GILITLLYFFAIYPILLIYSVAITNDSASFLVNQLGT-A-------PPLRGLLSLALILILVAIMSFGEKLLFKIMGPLV 152 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-C-------CcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 9999999999999999999999999998887653211 1 1122222222222222333334555555555444
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccccccccCCCCchhHHHHHHHHHHHHHHhhcccceeehhhhhhc----CCCCccccc
Q 012458 191 VMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTL----KSPPPANQT 266 (463)
Q Consensus 191 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m----~~p~~~~~~ 266 (463)
...+. ..+...++...+-+.. .....|. ....+.++..++++.++||.+|+++|+...+. +||+.+++|
T Consensus 153 ~~~ii---~l~~l~~~lip~~~~~--~L~~~p~--~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k 225 (397)
T TIGR00814 153 FPLVL---ILVLLSLYLIPHWNGA--NLTTFPS--FNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERK 225 (397)
T ss_pred HHHHH---HHHHHHHHHHHHcCHH--HHhcCCc--ccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHH
Confidence 33222 1111222222211100 0111111 11234678899999999999999999998333 323233688
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhhccCccc-----cc--cccccc-ccCChHHHHHHHHHHHHHHHhhhhccccchHH
Q 012458 267 MKKASTMSIITTTIFYLFCGGFGYAAFGDNTP-----GN--LLTGFG-FYEPYWLIDLANAFIVIHLVGGYQVYSQPIFA 338 (463)
Q Consensus 267 ~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~~~-----~~--il~n~~-~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~ 338 (463)
.+|+...+..+..++|+..-+.+....+.+.- .| .+..+. ..+..+...+..++..+.+.+||--+...++|
T Consensus 226 ~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e 305 (397)
T TIGR00814 226 CLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGARE 305 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999888877777765441 12 122111 01345677888888899999999999999999
Q ss_pred HHHHHHHhhcCCCCccccccccCCCCCCCcCCchhhHHHHHHHHHHHHHHHhhCCchHHHHHHhhhhhhhhhHhhhhhHH
Q 012458 339 HFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEM 418 (463)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~v~~l~Ga~~~~~l~filP~l~ 418 (463)
.+++++.+..+. .++ + .+++..+.......++.++.++..-|++-..++-.|+-..+.+.|++|...
T Consensus 306 ~l~~l~~~~~~~---~~~----~------~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~ 372 (397)
T TIGR00814 306 GLNGIVLNSLKM---KGK----K------INIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYA 372 (397)
T ss_pred HHHHHHHHHhcc---ccc----c------cCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 999988432111 000 0 111234445555677789999999999999999777777789999999999
Q ss_pred HHHHhccc
Q 012458 419 YFKQMNIE 426 (463)
Q Consensus 419 ~~~~~~~~ 426 (463)
-.|...-+
T Consensus 373 ~~~v~~l~ 380 (397)
T TIGR00814 373 IYKVPALK 380 (397)
T ss_pred HHccHHHH
Confidence 88865433
No 16
>PRK10655 potE putrescine transporter; Provisional
Probab=99.55 E-value=1.4e-11 Score=125.24 Aligned_cols=241 Identities=10% Similarity=0.083 Sum_probs=146.5
Q ss_pred ccccchHHHHHHHHHhhccccchhhHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHH
Q 012458 24 IKRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVD 103 (463)
Q Consensus 24 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~~ 103 (463)
++|+.+.++.+...+++++|+|++.+|..+++.|- .+++..++.+++.........|...+. |+.| ......+
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~-~~~~~w~i~~~~~~~~a~~~aeL~~~~-P~~G-----G~y~y~~ 76 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGT-ISILSWLVTAVGSMALAYAFAKCGMFS-RKSG-----GMGGYAE 76 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHhhhC-CCCC-----chHHHHH
Confidence 46678999999999999999999999999988886 467777777887777777777765442 3334 3345567
Q ss_pred HHcccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHH-HHHhhcCCCccch
Q 012458 104 MCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAV-QLILSQAPDFHNI 182 (463)
Q Consensus 104 ~~~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~pl~~~~~l~~l 182 (463)
+.+||...++......+.......++.....+.+..+++. . . .....+.+...++ +.-....+..+..
T Consensus 77 ~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~---~-~-------~~~~~~~~~~~~l~~~~~ln~~g~~~~ 145 (438)
T PRK10655 77 YAFGKSGNFMANYTYGVSLLIANVAIAISAVGYGTELFGA---T-L-------SPVQICLATIGVLWLCTVANFGGARIT 145 (438)
T ss_pred HHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---c-c-------chHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 8999988877777665555544444444444444443321 0 0 0011122212111 1122223334444
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCchhHHHHHHHHHHHHHHhhcccceeehhhhhhcCCCCc
Q 012458 183 QSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPP 262 (463)
Q Consensus 183 ~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~ 262 (463)
..++.+.+...+...++.++..... .+.+... +++. ........++..++....|+|.+-..+....+|+|||
T Consensus 146 ~~i~~i~~~~~l~~l~~~~i~~~~~-~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P-- 218 (438)
T PRK10655 146 GQISSVTVWGVIIPVVGLSIIGWFW-FSPSLYV---AAWN-PHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENP-- 218 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hCccccc---CCcC-ccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCc--
Confidence 4444443333322222222222211 1111110 1111 1111123456777888999999999999999999998
Q ss_pred cccchhhhhHHHHHHHHHHHHHHhhhhh
Q 012458 263 ANQTMKKASTMSIITTTIFYLFCGGFGY 290 (463)
Q Consensus 263 ~~~~~~~~~~~a~~~~~~~y~~~g~~gy 290 (463)
+|+.+|++..+..++.++|.+......
T Consensus 219 -~r~iPrAi~~~~~~~~~~Y~l~~~~~~ 245 (438)
T PRK10655 219 -ERNVPIAVLGGTLGAAVIYIVSTNVIA 245 (438)
T ss_pred -cccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999998765543
No 17
>PRK15049 L-asparagine permease; Provisional
Probab=99.52 E-value=3.5e-11 Score=123.80 Aligned_cols=366 Identities=13% Similarity=0.071 Sum_probs=189.0
Q ss_pred ccccchHHHHHHHHHhhccccchhhHHH-HHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHH
Q 012458 24 IKRTGTLWTAVAHIITGVIGSGVLSLAW-SMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAV 102 (463)
Q Consensus 24 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~-~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~ 102 (463)
.+|+.+.++..+..++.++|+|++..|. +.+++|- .+++..++.+++.+....-+.|..... |..| ....-+
T Consensus 26 l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp-~~il~~li~~i~~~~v~~slaELas~~-P~aG-----g~y~y~ 98 (499)
T PRK15049 26 YHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGP-ALALVYLICGLFSFFILRALGELVLHR-PSSG-----SFVSYA 98 (499)
T ss_pred hhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCC-----CHHHHH
Confidence 4667789999999999999999998877 5667775 467777778888888787788876543 3333 566677
Q ss_pred HHHcccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCCccch
Q 012458 103 DMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNI 182 (463)
Q Consensus 103 ~~~~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l 182 (463)
++.+|++..+++.....+.............+..+..+ +. .+ ..+...+.++..+ ++-+...+..|..
T Consensus 99 ~~~~G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~-~~--~~--------~~~~~~~~~~~~~-l~~~iN~~gvk~~ 166 (499)
T PRK15049 99 REFLGEKAAYVAGWMYFINWAMTGIVDITAVALYMHYW-GA--FG--------GVPQWVFALAALT-IVGTMNMIGVKWF 166 (499)
T ss_pred HHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cc--CC--------CCcHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 89999988777776665554333333333333332211 10 00 0111112222111 1222222233444
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc---cccCCCCch--hHHHHHHHHHHHHHHhhcccceeehhhhhhc
Q 012458 183 QSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGS---FSGVSTTTS--IEKMWLVAQALGDIAFAYPYSLILIEIQDTL 257 (463)
Q Consensus 183 ~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m 257 (463)
..+.....+.-+...+..++..+.....+.+.+.. .....+... ...+...+.++....|+|.+-..+....+|+
T Consensus 167 ~~i~~~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~ 246 (499)
T PRK15049 167 AEMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGEC 246 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 44443333222211111111222211111111111 111111111 1223445566778999999999999999999
Q ss_pred CCCCccccchhhhhHHHHHHHHHHHHHHhhhhhhhccCccc----ccccccccccCChHHHHHHHHHHHHHHHhhhhccc
Q 012458 258 KSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTP----GNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYS 333 (463)
Q Consensus 258 ~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~~~----~~il~n~~~~~~~~~~~~~~~~~~i~~~~s~pl~~ 333 (463)
||| +|+.+|++..+.....++|...........+.+.. ++...-+.....++...+.++...+..+.+..-..
T Consensus 247 knP---~r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~~ii~~~ilia~~ss~ns~~ 323 (499)
T PRK15049 247 KDP---QTMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGL 323 (499)
T ss_pred cCh---hhHHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 998 68899999999999988888766654433332111 11111111001233445556666666665554444
Q ss_pred cchHHHHHHHHHhh-cCCCCccccccccCCCCCCCcCCchhhHHH-HHHHHHHHHHHHhhCCc--hHHHHHHhhhhhhhh
Q 012458 334 QPIFAHFEKWICEK-FPENGFLNNEFFLKPPLMPAFRWNPLRLCF-RTVYVVSVTAIAMSFPY--FNQVLGVIGGVIFWP 409 (463)
Q Consensus 334 ~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~ia~~vp~--~~~v~~l~Ga~~~~~ 409 (463)
+...+.+...-.++ .| ++-.+.+ ++..+.+-++ ..++.++..++....|+ ++.++++.+. +..
T Consensus 324 ~~~sR~l~a~Ardg~lP--~~f~kv~---------k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~~--~~l 390 (499)
T PRK15049 324 YCTGRILRSMAMGGSAP--SFMAKMS---------RQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFASL--GII 390 (499)
T ss_pred HHHHHHHHHHHhcCCcC--HHHHHhC---------CCCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHH--HHH
Confidence 44444443332211 11 1101100 1111333332 22222222233333332 4455555543 347
Q ss_pred hHhhhhhHHHHHHhc
Q 012458 410 LTIYFPVEMYFKQMN 424 (463)
Q Consensus 410 l~filP~l~~~~~~~ 424 (463)
+.|++|.+.+++.||
T Consensus 391 i~y~~~~~~~l~~R~ 405 (499)
T PRK15049 391 ASWAFIIVCQMRLRK 405 (499)
T ss_pred HHHHHHHHHHHHHHH
Confidence 899999999988764
No 18
>PRK10249 phenylalanine transporter; Provisional
Probab=99.50 E-value=4.9e-11 Score=121.68 Aligned_cols=244 Identities=12% Similarity=0.025 Sum_probs=147.8
Q ss_pred CccccchHHHHHHHHHhhccccchhhHHHHHH-HhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHH
Q 012458 23 FIKRTGTLWTAVAHIITGVIGSGVLSLAWSMA-QLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEA 101 (463)
Q Consensus 23 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~~f~-~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l 101 (463)
+.+|+.+.++..+..++.++|+|+...|.... ++|- ..++..++.+++......-+.|...+. |..| ...+.
T Consensus 18 ~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp-~~~l~~li~~~~~~~~~~~~aEl~~~~-P~~G-----g~~~y 90 (458)
T PRK10249 18 TLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGP-AVLLGYGVAGIIAFLIMRQLGEMVVEE-PVSG-----SFAHF 90 (458)
T ss_pred hhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCC-----CHHHH
Confidence 44677788999999999999999999876644 5565 477777888888888888888876653 3333 56667
Q ss_pred HHHHcccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCCccc
Q 012458 102 VDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHN 181 (463)
Q Consensus 102 ~~~~~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~ 181 (463)
+++.+|+...+++.....+.......+.....+..++.+.+. .....+.+++.. ++-....+..+.
T Consensus 91 ~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~-------------~~~~~~~~~~~~-l~~~lN~~gv~~ 156 (458)
T PRK10249 91 AYKYWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPD-------------VPTWIWAAAFFI-IINAVNLVNVRL 156 (458)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-------------CcHHHHHHHHHH-HHHHHHHhcchh
Confidence 889999998888887766665554555555444444433211 111122222211 222233334444
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccccccc-CCCCc-hhHHHHHHHHHHHHHHhhcccceeehhhhhhcC
Q 012458 182 IQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGF-VMGSFSG-VSTTT-SIEKMWLVAQALGDIAFAYPYSLILIEIQDTLK 258 (463)
Q Consensus 182 l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~ 258 (463)
.+.+.....+.-+...++.++..+.......+ .+....+ +++.. ....+.++..++....|+|.+-..+....+|+|
T Consensus 157 ~~~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~ 236 (458)
T PRK10249 157 YGETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEAR 236 (458)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhc
Confidence 44444333322221111221222221111111 1111111 11100 012345678899999999999999999999999
Q ss_pred CCCccccchhhhhHHHHHHHHHHHHHHhhhhh
Q 012458 259 SPPPANQTMKKASTMSIITTTIFYLFCGGFGY 290 (463)
Q Consensus 259 ~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy 290 (463)
|| +|+.+|++..+.....++|........
T Consensus 237 ~P---~k~iPrai~~~~~~~~~~y~~~~~~~~ 265 (458)
T PRK10249 237 DP---EKSIPKAVNQVVYRILLFYIGSLVVLL 265 (458)
T ss_pred CH---hhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 98 689999999999999999987544433
No 19
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.50 E-value=8.1e-11 Score=119.80 Aligned_cols=241 Identities=12% Similarity=0.095 Sum_probs=143.5
Q ss_pred CccccchHHHHHHHHHhhccccchhhHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHH
Q 012458 23 FIKRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAV 102 (463)
Q Consensus 23 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~ 102 (463)
+++|+.+.++.++..+++++|+|++.+|....+.|. ..++..++.++........+.|..... |+.| ..+.| +
T Consensus 5 ~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~-~~~~~~~i~~~~~l~~al~~aEL~s~~-P~aG--G~y~~---~ 77 (445)
T PRK10644 5 ADAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSSLD-PSPG--GSYAY---A 77 (445)
T ss_pred ccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhC-CCCC--ChhHH---H
Confidence 346678999999999999999999999999888774 345556666666666666667765543 3334 23444 7
Q ss_pred HHHcccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHH--HHhhcCCCcc
Q 012458 103 DMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQ--LILSQAPDFH 180 (463)
Q Consensus 103 ~~~~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~pl~~~~~l~ 180 (463)
++.+||...+++.....+.......+......+....+.+.. .......++..+++ +-....+..|
T Consensus 78 ~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~ln~~gvk 145 (445)
T PRK10644 78 RRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL------------KDPLVLTITCVVVLWIFVLLNIVGPK 145 (445)
T ss_pred HHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------------CCcHHHHHHHHHHHHHHHHHHHhchH
Confidence 889999988877766665544444444444444444433210 00111111111121 2222233345
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCchhHHHHHHHHHHHHHHhhcccceeehhhhhhcCCC
Q 012458 181 NIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSP 260 (463)
Q Consensus 181 ~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p 260 (463)
....++.+.....+...++.....+. ..+.+... .+++ .........+..++....|+|.+-.......+|+|||
T Consensus 146 ~~~~i~~i~~~~~~i~l~~~~~~~~~-~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P 220 (445)
T PRK10644 146 MITRVQAVATVLALIPIVGIAVFGWF-WFRGETYM---AAWN-VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNP 220 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HhCchhcc---CCcc-ccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCc
Confidence 55555544443332211111111111 11111100 1111 1111233456677888999999999999999999998
Q ss_pred CccccchhhhhHHHHHHHHHHHHHHhhhhh
Q 012458 261 PPANQTMKKASTMSIITTTIFYLFCGGFGY 290 (463)
Q Consensus 261 ~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy 290 (463)
+|+.+|++..+..++.++|.+..+...
T Consensus 221 ---~r~iPrai~~s~~i~~v~Y~l~~~~~~ 247 (445)
T PRK10644 221 ---KRNVPIATIGGVLIAAVCYVLSSTAIM 247 (445)
T ss_pred ---ccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999998877643
No 20
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.49 E-value=1.2e-10 Score=118.23 Aligned_cols=244 Identities=11% Similarity=0.060 Sum_probs=144.9
Q ss_pred CccccchHHHHHHHHHhhccccchhhHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHH
Q 012458 23 FIKRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAV 102 (463)
Q Consensus 23 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~ 102 (463)
+++|+.+.++.....+++++|+|++.+|...++.|-. .++..++.++..........|...+. |+.| ..++| +
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~~-P~~G--G~y~y---~ 74 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIGAMSLAYVYARLATKN-PQQG--GPIAY---A 74 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhC-CCCC--ChhHH---H
Confidence 3467789999999999999999999999999988863 56666666777666666677765543 3333 22333 4
Q ss_pred HHHcccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHH-HHHHhhcCCCccc
Q 012458 103 DMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGA-VQLILSQAPDFHN 181 (463)
Q Consensus 103 ~~~~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~pl~~~~~l~~ 181 (463)
++ +|+...+++.............++.+...+.+..+++.. ++ .. ..+.....+ .++-+...+..|.
T Consensus 75 ~~-~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~----~~-----~~--~~~~~~~~i~~~~~~ln~~gvk~ 142 (435)
T PRK10435 75 GE-ISPAFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVL----ND-----PI--PAGIACIAIVWVFTFVNMLGGTW 142 (435)
T ss_pred HH-HCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc----CC-----hH--HHHHHHHHHHHHHHHHHHHhHHH
Confidence 56 788877777766554444444455455555555443321 00 01 111111111 1122223333444
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCchhHHHHHHHHHHHHHHhhcccceeehhhhhhcCCCC
Q 012458 182 IQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPP 261 (463)
Q Consensus 182 l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~ 261 (463)
...++.+..+..+...+..++.... ..++... .+++.+. ......++..++....|+|.+-..+....+|+|||
T Consensus 143 ~~~i~~i~~~~~li~~~~~~i~g~~---~~~~~~~-~~~~~~~-~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP- 216 (435)
T PRK10435 143 VSRLTTIGLVLVLIPVVGTAIVGWH---WFDAATY-AANWNTS-DTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNP- 216 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HcCHHhh-cccccCC-CCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCc-
Confidence 4444443333322111111111111 1111000 0111111 11235678889999999999999999999999998
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHhhhhhhhc
Q 012458 262 PANQTMKKASTMSIITTTIFYLFCGGFGYAAF 293 (463)
Q Consensus 262 ~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~f 293 (463)
+|+.+|++..+..++.++|...........
T Consensus 217 --~r~iPrAi~~~~~iv~ilYil~~~~~~~~~ 246 (435)
T PRK10435 217 --KRTVPLATMLGTGLAGIIYIAATQVISGMF 246 (435)
T ss_pred --cccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 689999999999999999998877654433
No 21
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.46 E-value=2.3e-10 Score=117.31 Aligned_cols=248 Identities=12% Similarity=0.057 Sum_probs=151.3
Q ss_pred cccchHHHHHHHHHhhccccchhhHHHHHHHhC-hhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHH
Q 012458 25 KRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLG-WIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVD 103 (463)
Q Consensus 25 ~~~~s~~~a~~~l~~~~iG~GiL~LP~~f~~~G-~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~~ 103 (463)
+|+.+.+++.+..+++++|+|++.+|....+.| -...++..++.++..........|...+.+.+.| ...+..+
T Consensus 6 ~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sG-----G~y~y~~ 80 (473)
T TIGR00905 6 SKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDG-----GIYAYAR 80 (473)
T ss_pred CCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC-----ChhhhHH
Confidence 567899999999999999999999999987654 3233555667777777777777776655432133 3344558
Q ss_pred HHcccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHH-HHHHHHHHhhcCCCccch
Q 012458 104 MCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYML-IFGAVQLILSQAPDFHNI 182 (463)
Q Consensus 104 ~~~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~pl~~~~~l~~l 182 (463)
+.+||...++......+.......++.....+.+..+++.. ..+ .....+.. +....+.-....+..+..
T Consensus 81 ~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~--~~~-------~~~~~~~~~~~~~~~~~~ln~~Gi~~~ 151 (473)
T TIGR00905 81 EGFGPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLF--GSG-------NPVPSILGASVLLWVFTFLVLRGVRQA 151 (473)
T ss_pred hHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--cCC-------CcHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 89999988888877766555555666666666666655421 000 01111111 111112223344455666
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCchhHHHHHHHHHHHHHHhhcccceeehhhhhhcCCCCc
Q 012458 183 QSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPP 262 (463)
Q Consensus 183 ~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~ 262 (463)
..++.+.....+...++.++..+.. .+.+....+......+.....+..+..++....|+|.+-.......+|+||+
T Consensus 152 ~~i~~~~~~~~l~~l~~~ii~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~~-- 228 (473)
T TIGR00905 152 AFINTITTIAKLIPLFLFIIIGWFW-FKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKNK-- 228 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-hCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcc--
Confidence 6666655544333222222222221 2211110010000000111234567778888999999999999999999973
Q ss_pred cccchhhhhHHHHHHHHHHHHHHhhhhhh
Q 012458 263 ANQTMKKASTMSIITTTIFYLFCGGFGYA 291 (463)
Q Consensus 263 ~~~~~~~~~~~a~~~~~~~y~~~g~~gy~ 291 (463)
|+.+|++..+..++.++|.+.......
T Consensus 229 --r~iPrai~~~~~i~~~~Yil~~~~~~~ 255 (473)
T TIGR00905 229 --SDVGKATVLGTLGALVIYILITLLSLG 255 (473)
T ss_pred --ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999987765443
No 22
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.44 E-value=2.1e-10 Score=117.51 Aligned_cols=365 Identities=12% Similarity=0.079 Sum_probs=194.7
Q ss_pred ccchHHHHHHHHHhhccccchhhHHHHHH-HhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHH
Q 012458 26 RTGTLWTAVAHIITGVIGSGVLSLAWSMA-QLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDM 104 (463)
Q Consensus 26 ~~~s~~~a~~~l~~~~iG~GiL~LP~~f~-~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~~~ 104 (463)
|+.+.++.....+++++|+|++.+|.... .+|....++..++.++..........|...+.+...| ...+-+++
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gG-----G~y~y~~~ 75 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDG-----GVYSYAKA 75 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC-----ChhhhHHh
Confidence 45688899999999999999999988855 5554334555677777777777777776655322122 33444789
Q ss_pred HcccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHH-HHHHHHHhhcCCCccchh
Q 012458 105 CLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLI-FGAVQLILSQAPDFHNIQ 183 (463)
Q Consensus 105 ~~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~pl~~~~~l~~l~ 183 (463)
.+||...++......+.......++.....+.+..+.+... + ..+...+.+. ..+..+-....+..+..+
T Consensus 76 ~fG~~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~---~------~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~ 146 (468)
T TIGR03810 76 GFGPFMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFG---G------GNNPPSIIGASVLLWCVHFLVLRGVEGAA 146 (468)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---C------CCcHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 99999888887777666555555666555555554433210 0 0011111211 111122223334555555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc-cccCC-CCchhHHHHHHHHHHHHHHhhcccceeehhhhhhcCCCC
Q 012458 184 SLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGS-FSGVS-TTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPP 261 (463)
Q Consensus 184 ~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~ 261 (463)
.++.+..+.-+...++.++..+.. .+.+....+ ..+.+ .........++..++....|+|.+-.....+.+|.||+
T Consensus 147 ~i~~i~~~~ki~~l~~~ii~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~- 224 (468)
T TIGR03810 147 FINTITTIAKLVPLFVFIVIGIFA-FKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEKR- 224 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccCc-
Confidence 555554443332222222222211 111111000 00000 00111223456678888999999999988888998874
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHhhhhhhhccCcc----ccc----ccccccccCChHHHHHHHHHHHHHHHhhhhccc
Q 012458 262 PANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT----PGN----LLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYS 333 (463)
Q Consensus 262 ~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~~----~~~----il~n~~~~~~~~~~~~~~~~~~i~~~~s~pl~~ 333 (463)
|+.+|++..+.....++|..+.+..+...+++. +++ ...+. ..++...+..+...++.+.+.--..
T Consensus 225 ---k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~---~g~~~~~~i~~~~~is~~~~~~~~~ 298 (468)
T TIGR03810 225 ---SDVGKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHM---VGTWGAVLINIGLIISILGAWLSWT 298 (468)
T ss_pred ---ccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHH---cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999988876554443221 111 11122 1345556667777777776665544
Q ss_pred cchHHHHHHHHHhh-cCCCCccccccccCCCCCCCcCCchhhHHHHHHHHHHHHHHHhhC--CchHHHHHHhhhhhhhhh
Q 012458 334 QPIFAHFEKWICEK-FPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSF--PYFNQVLGVIGGVIFWPL 410 (463)
Q Consensus 334 ~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~v--p~~~~v~~l~Ga~~~~~l 410 (463)
...-+.+...-.++ .|+ +-.+.+ ++..+.+-++....+...+.+.... +.++.+.++.+. ...+
T Consensus 299 ~~~sR~~~a~ardg~lP~--~f~k~~---------~~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~--~~li 365 (468)
T TIGR03810 299 LLPAEIPLLMAKDKLMPK--YFGKEN---------ANGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLATS--AILV 365 (468)
T ss_pred HHHHHHHHHHHhCCCccH--HHHhhC---------CCCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH--HHHH
Confidence 44333333222111 110 000000 1112333333222222111111112 235555555443 3468
Q ss_pred HhhhhhHHHHHHhcc
Q 012458 411 TIYFPVEMYFKQMNI 425 (463)
Q Consensus 411 ~filP~l~~~~~~~~ 425 (463)
.|+++++.+++.+++
T Consensus 366 ~y~~~~~~~~~l~~~ 380 (468)
T TIGR03810 366 PYLWSAAYQVKLSWR 380 (468)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999988887543
No 23
>PRK10746 putative transport protein YifK; Provisional
Probab=99.43 E-value=2.2e-10 Score=116.87 Aligned_cols=366 Identities=13% Similarity=0.050 Sum_probs=196.8
Q ss_pred ccccchHHHHHHHHHhhccccchhhHHHH-HHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHH
Q 012458 24 IKRTGTLWTAVAHIITGVIGSGVLSLAWS-MAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAV 102 (463)
Q Consensus 24 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~~-f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~ 102 (463)
.+|+.+.++..+..+.+++|+|++..|.. .+.+|- ..++..++.+++.+....-+.|..... |+.| ++.+-+
T Consensus 8 l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp-~~~l~~~i~g~~~~~v~~~~aEl~~~~-P~sG-----g~~~y~ 80 (461)
T PRK10746 8 LQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGP-SVLLAYIIAGLFVFFIMRSMGEMLFLE-PVTG-----SFAVYA 80 (461)
T ss_pred HhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCC-----CHHHHH
Confidence 46678899999999999999999997665 556675 456667777777777777777765543 3333 677788
Q ss_pred HHHcccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCCccch
Q 012458 103 DMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNI 182 (463)
Q Consensus 103 ~~~~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l 182 (463)
++.+|+....++.....+.....+.+.....+..++.+.+. .....+..+..+++ -....+..+..
T Consensus 81 ~~~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~-------------~~~~~~~~~~~~~~-~~lN~~gv~~~ 146 (461)
T PRK10746 81 HRYMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPE-------------MAQWIPALIAVALV-ALANLAAVRLY 146 (461)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------------CchHHHHHHHHHHH-HHHHHHhHHHH
Confidence 99999998888887777766666666666666655544221 11222222222221 11222233333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHh---cCCccccccccCCCCch--hHHHHHHHHHHHHHHhhcccceeehhhhhhc
Q 012458 183 QSLSVIAAVMSFAYSFIGFGLGVAKVI---GNGFVMGSFSGVSTTTS--IEKMWLVAQALGDIAFAYPYSLILIEIQDTL 257 (463)
Q Consensus 183 ~~~s~~~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m 257 (463)
+.+.......-+...++.++..+.... .+........++.+... ...+.++..++....|+|.+-..+.....|+
T Consensus 147 ~~~e~~~~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~ 226 (461)
T PRK10746 147 GEIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEA 226 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 333322222211111111111111111 11100001111111111 1235567889999999999999999999999
Q ss_pred CCCCccccchhhhhHHHHHHHHHHHHHHhhhhhhhccCcccc----cccccccccCChHHHHHHHHHHHHHHHhhhhccc
Q 012458 258 KSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPG----NLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYS 333 (463)
Q Consensus 258 ~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~~~~----~il~n~~~~~~~~~~~~~~~~~~i~~~~s~pl~~ 333 (463)
||| +|+.+|++..+.....++|.............+..+ +...-+.....+....+.++...+..+.+.....
T Consensus 227 knP---~k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~~~~~~i~~~~il~a~~s~~n~~~ 303 (461)
T PRK10746 227 KNP---QVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGCNSGM 303 (461)
T ss_pred cCh---hhHHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 998 689999999998888888887654443333222111 1111111001223344555555566665554444
Q ss_pred cchHHHHHHHHHhh-cCCCCccccccccCCCCCCCcCCchhhHHH-HHHHHHHHHHHHhhCCchHHHHHHhhhhhh--hh
Q 012458 334 QPIFAHFEKWICEK-FPENGFLNNEFFLKPPLMPAFRWNPLRLCF-RTVYVVSVTAIAMSFPYFNQVLGVIGGVIF--WP 409 (463)
Q Consensus 334 ~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~ia~~vp~~~~v~~l~Ga~~~--~~ 409 (463)
+...+.+...-.++ .|. +-.+.+ ++..+.+-++ .....+.........|+-+.+++..-++++ ..
T Consensus 304 ~~~sR~l~~~a~~g~lP~--~~~~~~---------~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~ 372 (461)
T PRK10746 304 YSCGRMLYALAKNRQLPA--AMAKVS---------RHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGM 372 (461)
T ss_pred HHHHHHHHHHHhCCCcCH--HHHHhC---------CCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH
Confidence 44444443332211 011 000000 1111223222 222223333444455665655555443332 37
Q ss_pred hHhhhhhHHHHHHhc
Q 012458 410 LTIYFPVEMYFKQMN 424 (463)
Q Consensus 410 l~filP~l~~~~~~~ 424 (463)
+.++++++.+++.+|
T Consensus 373 i~w~~i~~~~i~~r~ 387 (461)
T PRK10746 373 VPWFVILISQLRFRR 387 (461)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888888764
No 24
>TIGR00909 2A0306 amino acid transporter.
Probab=99.41 E-value=1.1e-10 Score=118.34 Aligned_cols=293 Identities=14% Similarity=0.036 Sum_probs=178.4
Q ss_pred cccchHHHHHHHHHhhccccchhhHHHHHH-HhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHH
Q 012458 25 KRTGTLWTAVAHIITGVIGSGVLSLAWSMA-QLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVD 103 (463)
Q Consensus 25 ~~~~s~~~a~~~l~~~~iG~GiL~LP~~f~-~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~~ 103 (463)
+|+.+.++.++..+++++|+|++.+|.... ..|. .+++..++.+++.......+.|..++.+ +.| ..+ +..+
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~-~~~l~~li~~~~~~~~a~~~~el~~~~p-~~G--g~y---~~~~ 74 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGP-AVILSFVLAGLTALFIALVYAELAAMLP-VAG--SPY---TYAY 74 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCC-HHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCC--cce---eeHH
Confidence 467889999999999999999999997655 4444 3555666677777777777777665533 223 233 4446
Q ss_pred HHcccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccc-----cccchhHHHHHHHHHHhhcCCC
Q 012458 104 MCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACE-----YSDTYYMLIFGAVQLILSQAPD 178 (463)
Q Consensus 104 ~~~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~pl~~~~~ 178 (463)
+.+||+..++......+.....+..+....++.+..+++....+ .+ .... .....+..+...++.-+...+.
T Consensus 75 ~~~G~~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g 151 (429)
T TIGR00909 75 EAMGELTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLD--LP-AVLTAKPGNGGVFNLPALLIVLFLTYILYLG 151 (429)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc--Cc-hhhhcCCcccccccHHHHHHHHHHHHHHHhC
Confidence 78999988888888877777777788888888887776531100 00 0000 0011112222233333344445
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCchhHHHHHHHHHHHHHHhhcccceeehhhhhhcC
Q 012458 179 FHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLK 258 (463)
Q Consensus 179 l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~ 258 (463)
.+...+++.+.....+...++.++....+. +. .+.... .+ ....++..++....++|.+........+|+|
T Consensus 152 ~~~~~~~~~v~~~~~i~~l~~~~~~~~~~~---~~--~~~~~~---~~-~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~ 222 (429)
T TIGR00909 152 AKESGKVNDILVVLKVAALLLFAALGAIHF---AS--NNYTPF---MP-MGFGGVGAATALVFFAFIGFEAISTAAEEVK 222 (429)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhhHHHhhC---cH--HhcCCC---CC-CcHHHHHHHHHHHHHHHhhHHHHHhhHHhcc
Confidence 666677776665554433322222222211 11 111111 11 1234677888899999999999999999999
Q ss_pred CCCccccchhhhhHHHHHHHHHHHHHHhhhhhhhccCcc--c--c---cccccccccCChHHHHHHHHHHHHHHHhhhhc
Q 012458 259 SPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT--P--G---NLLTGFGFYEPYWLIDLANAFIVIHLVGGYQV 331 (463)
Q Consensus 259 ~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~~--~--~---~il~n~~~~~~~~~~~~~~~~~~i~~~~s~pl 331 (463)
|| +|+.+|++..+..+..++|...........+.+. + + .+..+. ..++...+..+...+..+.+...
T Consensus 223 ~p---~r~ip~ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~ 296 (429)
T TIGR00909 223 NP---ERDIPKAIILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDL---GQGIGGLILTAGAVFSIASVMLA 296 (429)
T ss_pred Cc---cccccHHHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHh---CchHHHHHHHHHHHHHHHHHHHH
Confidence 98 5889999999999999999988765543322111 0 1 111111 23555566677777777777755
Q ss_pred cccchHHHHHH
Q 012458 332 YSQPIFAHFEK 342 (463)
Q Consensus 332 ~~~p~~~~~~~ 342 (463)
......+.+..
T Consensus 297 ~~~~~sR~~~~ 307 (429)
T TIGR00909 297 GIYGTSRVLFA 307 (429)
T ss_pred HHHHHHHHHHH
Confidence 55444444443
No 25
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.41 E-value=4.3e-10 Score=114.76 Aligned_cols=244 Identities=16% Similarity=0.133 Sum_probs=152.9
Q ss_pred CccccchHHHHHHHHHhhccccchhhHH-HHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHH
Q 012458 23 FIKRTGTLWTAVAHIITGVIGSGVLSLA-WSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEA 101 (463)
Q Consensus 23 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP-~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l 101 (463)
+.+|+.+.++..+..+++++|+|++.+| .+.+++|- .+++..++.+++.......+.|...+. |..| ...+.
T Consensus 9 ~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~-~~~i~~~i~~v~~~~~a~~~aEl~s~~-P~~G-----g~~~~ 81 (452)
T TIGR01773 9 KLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGP-AALLAYLLAGLLVVFIMRMLGEMAVAN-PDTG-----SFSTY 81 (452)
T ss_pred hHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCC-HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCC-----CHHHH
Confidence 3467789999999999999999999999 66778886 467777888888887777788876543 3333 55677
Q ss_pred HHHHcccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHH-HHHHhhcCCCcc
Q 012458 102 VDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGA-VQLILSQAPDFH 180 (463)
Q Consensus 102 ~~~~~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~pl~~~~~l~ 180 (463)
+++.+||...+++.....+.....+.......++.++.+.+. .+ .|....++ .+.-....+..+
T Consensus 82 ~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~--~~~~~~~~~~~~~~~n~~gv~ 146 (452)
T TIGR01773 82 ADDAIGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPD-------------IP--LWLFSLILTIVLTLTNLYSVK 146 (452)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------------Cc--HHHHHHHHHHHHHHHHHHhcc
Confidence 889999999888888777776666666666666666554321 11 22221111 112222223344
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-c-cccccCCCCch--hHHHHHHHHHHHHHHhhcccceeehhhhhh
Q 012458 181 NIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFV-M-GSFSGVSTTTS--IEKMWLVAQALGDIAFAYPYSLILIEIQDT 256 (463)
Q Consensus 181 ~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~-~~~~~~~~~~~--~~~~~~~~~~~~~~~faf~~~~~~~~i~~~ 256 (463)
....+.....+.-+...+..++..+.......+. + ....++.+.+. .+.+.++..++....|+|.+-..+....+|
T Consensus 147 ~~~~~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E 226 (452)
T TIGR01773 147 SYGEFEFWFALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAE 226 (452)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHh
Confidence 4554444433332222111121222111111110 0 00111111111 123346888999999999999999999999
Q ss_pred cCCCCccccchhhhhHHHHHHHHHHHHHHhhhhhh
Q 012458 257 LKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYA 291 (463)
Q Consensus 257 m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~ 291 (463)
+||| +|+.+|++..+.....++|.........
T Consensus 227 ~k~P---~r~iPrAi~~~~~~~~~~y~l~~~~~~~ 258 (452)
T TIGR01773 227 SSNP---IKSITRATNSVIWRIIVFYLGSIFIVVA 258 (452)
T ss_pred hcCh---hhHHHHHHHHHHHHHHHHHHHHHHHHee
Confidence 9998 6899999988888888888876554433
No 26
>PRK11021 putative transporter; Provisional
Probab=99.40 E-value=8.4e-10 Score=111.19 Aligned_cols=230 Identities=13% Similarity=0.102 Sum_probs=137.8
Q ss_pred hHHHHHHHHHhhccccchhhHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHHHccc
Q 012458 29 TLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGK 108 (463)
Q Consensus 29 s~~~a~~~l~~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~~~~~G~ 108 (463)
+.+++....+++++|+|++.+|....+.+=..+++..++.++..........|...+. |+.| ....-+++.+||
T Consensus 2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~~~~~~~~i~~~~~~~~al~~aEl~s~~-P~aG-----G~y~y~~~~~G~ 75 (410)
T PRK11021 2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGNNSLWAWPLLILLIFPIAIVFARLGRHF-PHAG-----GPAHFVGMAFGP 75 (410)
T ss_pred cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCC-----CHHHhHHHHhCc
Confidence 5788999999999999999998876544323567777788888888888888877654 3334 444566788999
Q ss_pred ccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCCccchhhHHHH
Q 012458 109 TNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVI 188 (463)
Q Consensus 109 ~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~ 188 (463)
+..++......+.......+......+.+..+++. + .+.. ....+....++-+...+..|...+++.+
T Consensus 76 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~------~~~~-~~~~~~~~~~~~~ln~~Gv~~~~~~~~~ 143 (410)
T PRK11021 76 RLGRVTGWLFLSVIPVGLPAALQIAAGFGQALFGW-----S------SWQL-LLAELLTLALLWLLNLRGASSSANLQTV 143 (410)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCC-----C------CchH-HHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 98877776655433222333333333333333211 0 1111 1111111222222333444444444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCchhHHHHHHHHHHHHHHhhcccceeehhhhhhcCCCCccccchh
Q 012458 189 AAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMK 268 (463)
Q Consensus 189 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~ 268 (463)
..+..+ .++..... ..+....+. .+++.. ...+.++..++....|+|.+...+....+|+||| +|+++
T Consensus 144 ~~~~~~----~i~~~~~~---~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P---~k~iP 211 (410)
T PRK11021 144 IALLIV----ALVVAIWW---AGDIKPADI-PFPAPG-SIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNP---ERDFP 211 (410)
T ss_pred HHHHHH----HHHHHHHH---HcCCchhcC-CCCCCC-CccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCc---ccccc
Confidence 322211 11111111 111111111 111111 1245677888999999999999999999999998 68999
Q ss_pred hhhHHHHHHHHHHHHHHhhh
Q 012458 269 KASTMSIITTTIFYLFCGGF 288 (463)
Q Consensus 269 ~~~~~a~~~~~~~y~~~g~~ 288 (463)
|++..+..++.++|......
T Consensus 212 rAi~~~~~~~~~lYil~~~~ 231 (410)
T PRK11021 212 RALMIGLLLAGLVYWACTVV 231 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987655
No 27
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.40 E-value=4.4e-10 Score=114.60 Aligned_cols=239 Identities=15% Similarity=0.065 Sum_probs=146.3
Q ss_pred CccccchHHHHHHHHHhhccccchhhHHHHHH-HhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHH
Q 012458 23 FIKRTGTLWTAVAHIITGVIGSGVLSLAWSMA-QLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEA 101 (463)
Q Consensus 23 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~~f~-~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l 101 (463)
+.+|+.+.++..+..+++++|+|++-.|.... ++|- ..++..++.+++.+....-+.|...+. |..| ++.+-
T Consensus 9 ~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~-P~aG-----g~y~~ 81 (456)
T PRK10238 9 QLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEE-PVAG-----SFSHF 81 (456)
T ss_pred hhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCC-----CHHHH
Confidence 45777899999999999999999988877654 5564 456667777777777777777765543 3333 55556
Q ss_pred HHHHcccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCCccc
Q 012458 102 VDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHN 181 (463)
Q Consensus 102 ~~~~~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~ 181 (463)
+++.+||...+++.....+.....+.+.....++.++.+.+. .+...+.+++..+. -.......|.
T Consensus 82 ~~~~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~-------------~~~~~~~~i~~~~~-~~lN~~gv~~ 147 (456)
T PRK10238 82 AYKYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPE-------------IPTWVSAAVFFVVI-NAINLTNVKV 147 (456)
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------------CcHHHHHHHHHHHH-HHHHHHhHHH
Confidence 778899999999888888887777777777667766544221 11222222222221 1222223344
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CccccccccCCCCch--hHHHHHHHHHHHHHHhhcccceeehhhhhhcC
Q 012458 182 IQSLSVIAAVMSFAYSFIGFGLGVAKVIGN-GFVMGSFSGVSTTTS--IEKMWLVAQALGDIAFAYPYSLILIEIQDTLK 258 (463)
Q Consensus 182 l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~ 258 (463)
...++....+..+...++.++..+.....+ +.++....+..+.+. .+.+.++..+++...|+|.+-..+....+|+|
T Consensus 148 ~~~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~k 227 (456)
T PRK10238 148 FGEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEAD 227 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhc
Confidence 444444433333322222222222211211 111111111100111 12234666778889999999999999999999
Q ss_pred CCCccccchhhhhHHHHHHHHHHHHHH
Q 012458 259 SPPPANQTMKKASTMSIITTTIFYLFC 285 (463)
Q Consensus 259 ~p~~~~~~~~~~~~~a~~~~~~~y~~~ 285 (463)
|| +|+.+|++..+.....+.|...
T Consensus 228 nP---~r~iPrAi~~~~~~i~~~y~~~ 251 (456)
T PRK10238 228 NP---EQSIPKATNQVIYRILIFYIGS 251 (456)
T ss_pred Ch---hhHHHHHHHHHHHHHHHHHHHH
Confidence 98 6889999988888888877654
No 28
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.40 E-value=5.6e-10 Score=114.45 Aligned_cols=288 Identities=15% Similarity=0.098 Sum_probs=157.1
Q ss_pred ccccchHHHHHHHHHhhccccchhhHHHHH-HHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHH
Q 012458 24 IKRTGTLWTAVAHIITGVIGSGVLSLAWSM-AQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAV 102 (463)
Q Consensus 24 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~~f-~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~ 102 (463)
.+|+.+.++..+..++.++|+|+...|... +.+|-...++..++.+++.+....-+.|...+. |+.| .+..-+
T Consensus 12 l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~-P~aG-----G~y~y~ 85 (471)
T PRK11387 12 FKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAM-PETG-----AFHVYA 85 (471)
T ss_pred hhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCC-----CHHHHH
Confidence 467789999999999999999999887664 667754346667777777777777777766553 3333 455677
Q ss_pred HHHcccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCCccch
Q 012458 103 DMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNI 182 (463)
Q Consensus 103 ~~~~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l 182 (463)
++.+|+...+++.....+.....+.......+..++.+.+. .....+.+++.++ +-+...+..|..
T Consensus 86 ~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p~-------------~~~~~~~~~~~~~-~~~in~~gvk~~ 151 (471)
T PRK11387 86 ARYLGPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFPQ-------------VPVWPWCLLFCAL-IFGLNVVSTRFF 151 (471)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-------------CcHHHHHHHHHHH-HHHHHHHhHHHH
Confidence 88999988777776666555444433333333333222110 1111222222222 222222333444
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CccccccccCCCCch-hHHHHHHHHHHHHHHhhcccceeehhhhhh
Q 012458 183 QSLSVIAAVMSFAYSFIGFGLGVAKVIGN-----GFVMGSFSGVSTTTS-IEKMWLVAQALGDIAFAYPYSLILIEIQDT 256 (463)
Q Consensus 183 ~~~s~~~~~~~~~~~~i~~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~faf~~~~~~~~i~~~ 256 (463)
...+......-+...+..++..+...... +.......++.+... .+...++..++....|+|.+-..+....+|
T Consensus 152 ~~~~~~~~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E 231 (471)
T PRK11387 152 AEGEFWFSLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGE 231 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 43332222222211111111222111110 000000011110000 112346777778889999999999999999
Q ss_pred cCCCCccccchhhhhHHHHHHHHHHHHHHhhhhhhhccCccc----ccccccccccCChHHHHHHHHHHHHHHHhhhhcc
Q 012458 257 LKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTP----GNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVY 332 (463)
Q Consensus 257 m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~~~----~~il~n~~~~~~~~~~~~~~~~~~i~~~~s~pl~ 332 (463)
+||| +|+++|++..+..+..++|...........+.+.. ++...-+.....++...+..+...++.+.+.--.
T Consensus 232 ~knP---~r~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~s~~~~~~~~ 308 (471)
T PRK11387 232 TENP---AKVIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLVFEKVGIPYAADIFNFVILTAILSAANSG 308 (471)
T ss_pred hcCh---hhHHHHHHHHHHHHHHHHHHHHHHHHheecCccccCccCChHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 9998 68999999999999999999877654333332111 1111101101234445555666656665555433
Q ss_pred cc
Q 012458 333 SQ 334 (463)
Q Consensus 333 ~~ 334 (463)
..
T Consensus 309 ~~ 310 (471)
T PRK11387 309 LY 310 (471)
T ss_pred HH
Confidence 33
No 29
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.39 E-value=8.3e-10 Score=113.05 Aligned_cols=243 Identities=15% Similarity=0.082 Sum_probs=145.2
Q ss_pred ccccchHHHHHHHHHhhccccchhhHHH-HHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHH
Q 012458 24 IKRTGTLWTAVAHIITGVIGSGVLSLAW-SMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAV 102 (463)
Q Consensus 24 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~-~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~ 102 (463)
.+|+.+.++..+..+++++|+|++-.|. +++++|. ..++..++.+++.+....-+.|..... + +..++.+.+
T Consensus 18 l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp-~~i~~~~i~~i~~~~~~~s~aEl~s~~-~-----~~~~~~~ya 90 (469)
T PRK11049 18 LRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGP-SIIFVYMIIGFMLFFVMRAMGELLLSN-L-----EYKSFSDFA 90 (469)
T ss_pred hhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhc-C-----CCCcHHHHH
Confidence 4677899999999999999999999865 6778787 456666677776666666666654321 1 222567889
Q ss_pred HHHcccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCCccch
Q 012458 103 DMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNI 182 (463)
Q Consensus 103 ~~~~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l 182 (463)
++.+||...+++.....+.......+.....+..+..+.+. .....+.++... ++-+......+..
T Consensus 91 ~~~~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~-------------~~~~~~~~~~~~-~~~~iN~~g~~~~ 156 (469)
T PRK11049 91 SDLLGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPD-------------LSDWVASLAVVL-LLLSLNLATVKMF 156 (469)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------------CcHHHHHHHHHH-HHHHHHHHhHHHH
Confidence 99999999888888777766545455555555555443221 111122222111 2222222334445
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcC-Ccccc---ccccCCCCch--hHHHHHHHHHHHHHHhhcccceeehhhhhh
Q 012458 183 QSLSVIAAVMSFAYSFIGFGLGVAKVIGN-GFVMG---SFSGVSTTTS--IEKMWLVAQALGDIAFAYPYSLILIEIQDT 256 (463)
Q Consensus 183 ~~~s~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~faf~~~~~~~~i~~~ 256 (463)
..++.+.....+...++.++..+.....+ +..++ ...+..+.++ .+.+.++..++....|+|.+-..+....+|
T Consensus 157 ~~i~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E 236 (469)
T PRK11049 157 GEMEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAE 236 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHH
Confidence 55554444333322222222222211111 00011 0111111111 123446788999999999999999999999
Q ss_pred cCCCCccccchhhhhHHHHHHHHHHHHHHhhhhh
Q 012458 257 LKSPPPANQTMKKASTMSIITTTIFYLFCGGFGY 290 (463)
Q Consensus 257 m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy 290 (463)
+||| +|+.+|++..+.....+.|......-.
T Consensus 237 ~knP---~r~iPrai~~~~~~~~~~y~l~~~~~~ 267 (469)
T PRK11049 237 TKDP---EKSLPRAINSIPIRIIMFYVFALIVIM 267 (469)
T ss_pred hcCH---hhHHHHHHHHHHHHHHHHHHHHHHHHe
Confidence 9998 688999998777777888876665543
No 30
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.39 E-value=1.1e-09 Score=111.83 Aligned_cols=242 Identities=17% Similarity=0.088 Sum_probs=143.9
Q ss_pred CccccchHHHHHHHHHhhccccchhhHHHH-HHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHH
Q 012458 23 FIKRTGTLWTAVAHIITGVIGSGVLSLAWS-MAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEA 101 (463)
Q Consensus 23 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~~-f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l 101 (463)
+.+|+.+.++..+..+++++|+|++.+|.. .+.+|- ..++..++.+++.+....-+.|...+. |..| ...+.
T Consensus 6 ~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~-~~~l~~~i~~i~~~~~a~~~aEl~s~~-P~~G-----g~y~y 78 (457)
T PRK10580 6 KLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGP-SVLLAYIIGGVAAYIIMRALGEMSVHN-PAAS-----SFSRY 78 (457)
T ss_pred cccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCC-----CHHHH
Confidence 346778999999999999999999999776 556665 467778888888888888888876553 3333 44446
Q ss_pred HHHHcccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCCccc
Q 012458 102 VDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHN 181 (463)
Q Consensus 102 ~~~~~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~ 181 (463)
+++.+||...+++.....+.....+.......+..+..+.+. .....+.+...+ +.-....+..|.
T Consensus 79 ~~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~-l~~~ln~~gv~~ 144 (457)
T PRK10580 79 AQENLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPT-------------VPHWIWVLSVVL-IICAVNLMSVKV 144 (457)
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------------CChHHHHHHHHH-HHHHHHHccchh
Confidence 788999998888877766555444444444444444333211 111122222222 222233334455
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH---HhcC-CccccccccCCCCch-hHHHHHHHHHHHHHHhhcccceeehhhhhh
Q 012458 182 IQSLSVIAAVMSFAYSFIGFGLGVAK---VIGN-GFVMGSFSGVSTTTS-IEKMWLVAQALGDIAFAYPYSLILIEIQDT 256 (463)
Q Consensus 182 l~~~s~~~~~~~~~~~~i~~~~~~~~---~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~faf~~~~~~~~i~~~ 256 (463)
...++....+..+...++.++..+.- ...+ +......+.+++... .+.+.++..++....|+|.+-.......+|
T Consensus 145 ~~~~~~~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E 224 (457)
T PRK10580 145 FGELEFWFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGE 224 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 55544433332222111111111111 1111 100000011111111 122446778889999999999999999999
Q ss_pred cCCCCccccchhhhhHHHHHHHHHHHHHHhhh
Q 012458 257 LKSPPPANQTMKKASTMSIITTTIFYLFCGGF 288 (463)
Q Consensus 257 m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~ 288 (463)
+||| +|+.+|++..+.....++|......
T Consensus 225 ~knP---~k~iPrAi~~~~~~~~~~y~~~~~~ 253 (457)
T PRK10580 225 AKDP---EKSIPRAINSVPMRILVFYVGTLFV 253 (457)
T ss_pred hcCh---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998 6789999998888888888766544
No 31
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.37 E-value=9.1e-10 Score=114.57 Aligned_cols=374 Identities=11% Similarity=0.032 Sum_probs=202.7
Q ss_pred CCccccchHHHHHHHHHhhccccchhhHHHHH--HHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHH
Q 012458 22 PFIKRTGTLWTAVAHIITGVIGSGVLSLAWSM--AQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYL 99 (463)
Q Consensus 22 ~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~~f--~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~ 99 (463)
++.+|+.+.++.++.-++.++|+|+..+|... ...|-. .++..++.++.+........|...+. |+.| ..+.|.
T Consensus 24 ~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~-P~sG--g~Y~y~ 99 (557)
T TIGR00906 24 SKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARV-PKAG--SAYLYS 99 (557)
T ss_pred cchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhC-CCCC--cceeeH
Confidence 34577889999999999999999999998654 346754 45666777777777777777766553 3444 345555
Q ss_pred HHHHHHcccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccc-cCCC--Cccccccc-chhHHHHHHHHHHhhc
Q 012458 100 EAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYH-REGH--EAACEYSD-TYYMLIFGAVQLILSQ 175 (463)
Q Consensus 100 ~l~~~~~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~-~~~~--~~~~~~~~-~~~~~i~~~~~~pl~~ 175 (463)
++.+|+...+++.....+.....+.+.....++.+..++...... .... ......+. .....+..++++-+..
T Consensus 100 ---~~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln 176 (557)
T TIGR00906 100 ---YVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLL 176 (557)
T ss_pred ---HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHH
Confidence 556899888888877777666555555555566666555321000 0000 00001111 1112222222222334
Q ss_pred CCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc---cCCCCchhHHHHHHHHHHHHHHhhcccceeehh
Q 012458 176 APDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFS---GVSTTTSIEKMWLVAQALGDIAFAYPYSLILIE 252 (463)
Q Consensus 176 ~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~ 252 (463)
.+..|..++++.+..+..+...++.++....+. +..+.... +.++.. ...+.+++.+.....|+|.+-..+..
T Consensus 177 ~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~---~~~~~~~~~~~~~~~f~-p~g~~g~l~g~~~~~faf~Gfd~v~~ 252 (557)
T TIGR00906 177 SFGVKESAWVNKIFTAINILVLLFVIIAGFTKA---DVANWSITEEKGAGGFM-PYGFTGVLSGAATCFFAFIGFDAIAT 252 (557)
T ss_pred HhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhC---CchhccccccccCCCCC-CcchHHHHHHHHHHHHHHhhHHHHHH
Confidence 456667777666655554433232222222221 11111100 000111 12345788889999999999999999
Q ss_pred hhhhcCCCCccccchhhhhHHHHHHHHHHHHHHhhhhhhhccCc---ccccccccccccCChHHHHHHHHHHHHHHHhhh
Q 012458 253 IQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDN---TPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGY 329 (463)
Q Consensus 253 i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~---~~~~il~n~~~~~~~~~~~~~~~~~~i~~~~s~ 329 (463)
..+|+||| +|+.+|++..+..+++++|..+...-...-+.+ ..+.+..-+.....++...+..+...+..+.+.
T Consensus 253 ~aeE~knP---~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl 329 (557)
T TIGR00906 253 TGEEVKNP---QRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAKYIVAVGALCGMSTSL 329 (557)
T ss_pred hHHhccCc---cccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcCchHHHHHHHHHHHHHHHHHH
Confidence 99999998 688999999999999999998776533322211 111111111111234555556666666666555
Q ss_pred hccccchHHHHHHHHHhh-cCCCCccccccccCCCCCCCcCCchhhHHHHHHHHHHHHHHHhhCCchHHHHHHhhhhhhh
Q 012458 330 QVYSQPIFAHFEKWICEK-FPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFW 408 (463)
Q Consensus 330 pl~~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~v~~l~Ga~~~~ 408 (463)
....+...+.+...-.++ .| ++-.+-+ | +...+.+-.+. ..+++.+++.+ .+++.+.++.. + +.
T Consensus 330 ~~~~~~~sRil~amarDGlLP--~~fakv~----~----r~~tP~~Ail~--~~iv~~il~~~-~~~~~l~~l~s-i-g~ 394 (557)
T TIGR00906 330 LGGMFPLPRVIYAMARDGLLF--KWLAQIN----S----KTKTPINATVV--SGAIAALMAFL-FDLKALVDLLS-I-GT 394 (557)
T ss_pred HHHHHHHHHHHHHHHcCCCcc--HHHhccC----C----CCCCcHHHHHH--HHHHHHHHHHH-cCHHHHHHHHH-H-HH
Confidence 444444433433322111 01 0000000 0 11112222221 12223333333 35666666543 2 24
Q ss_pred hhHhhhhhHHHHHHhc
Q 012458 409 PLTIYFPVEMYFKQMN 424 (463)
Q Consensus 409 ~l~filP~l~~~~~~~ 424 (463)
.+.|.+++...+.+|+
T Consensus 395 ll~y~lv~~~~l~lR~ 410 (557)
T TIGR00906 395 LLAYSLVAACVLILRY 410 (557)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 7889999888777663
No 32
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.37 E-value=1.1e-10 Score=115.53 Aligned_cols=285 Identities=14% Similarity=0.118 Sum_probs=172.4
Q ss_pred cchHHHHHHHHHhhccccchhhHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHHHc
Q 012458 27 TGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCL 106 (463)
Q Consensus 27 ~~s~~~a~~~l~~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~~~~~ 106 (463)
|.|.+|..+.+.++++|+|++.+|....+.+--.+.+..++.+.........+.+..++. +..+..|..++.+
T Consensus 2 ~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~-------p~~~~~~~~~~~~ 74 (359)
T TIGR00912 2 KISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKF-------PEKNFSEILSKYL 74 (359)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHC-------CCCCHHHHHHHHh
Confidence 567889999999999999999999987765544566667777777777788888876553 2237999999999
Q ss_pred ccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhH-HHHHHHHHHhhcCCCccchhhH
Q 012458 107 GKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYM-LIFGAVQLILSQAPDFHNIQSL 185 (463)
Q Consensus 107 G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~pl~~~~~l~~l~~~ 185 (463)
||+.+.+.......+....+.......++.+....- + + .+.+. .+..+++.-....+.++....+
T Consensus 75 Gk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~-~---------tp~~~~~l~~l~~~~~~~~~Gi~~i~r~ 140 (359)
T TIGR00912 75 GKILGRLLSILFILYFFLIAAYLIRIFADFIKTYLL----P-R---------TPIIVIIILIIIVSIYIVRKGIEVLLRT 140 (359)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----C-C---------CCHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 999888887777666666655555555555543221 1 1 11222 2222223333444566666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCchhHHHHHHHHHH-HHHHhhcccceeehhhhhhcCCCCccc
Q 012458 186 SVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQAL-GDIAFAYPYSLILIEIQDTLKSPPPAN 264 (463)
Q Consensus 186 s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~faf~~~~~~~~i~~~m~~p~~~~ 264 (463)
+.+.....+...+ ++... ...+.. +..+..+.. .+.+.+...+. ....++|.+.........++|||
T Consensus 141 ~~i~~~~~i~~~~--~il~~-~~~~~~----~~~~l~P~~-~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~---- 208 (359)
T TIGR00912 141 AEILLIIFLILFI--LVLIL-LAPKLG----NIKNLLPVL-ENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKK---- 208 (359)
T ss_pred HHHHHHHHHHHHH--HHHHH-Hhcccc----cHHHccCcc-ccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCCh----
Confidence 6655544332210 11111 111111 011111111 11223444433 46778888877878888888876
Q ss_pred cchhhhhHHHHHHHHHHHHHHhhhhhhhccCcccccc-------cccccccCC---hHHHHHHHHHHHHHHHhhhhcccc
Q 012458 265 QTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNL-------LTGFGFYEP---YWLIDLANAFIVIHLVGGYQVYSQ 334 (463)
Q Consensus 265 ~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~i-------l~n~~~~~~---~~~~~~~~~~~~i~~~~s~pl~~~ 334 (463)
|+.+|+...+..++.++|...-......+|.+..++. .+..+ -+ +.+..+.-.........+.-+..+
T Consensus 209 ~~~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~--~~~f~eR~e~~~~~~w~~~~f~~~~~~~~ 286 (359)
T TIGR00912 209 KKIKKSIIKAIIIGVLLYILTTFVSISVFGGNVTKNLYWPTLELIKLIN--IGDFIERFELIVMTFWVFIIFVKIAFYLY 286 (359)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHheecHHHhhhhcccHHHHHHHhh--HhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999888888888876543211 11111 01 112233334444555555556666
Q ss_pred chHHHHHHHHHh
Q 012458 335 PIFAHFEKWICE 346 (463)
Q Consensus 335 p~~~~~~~~~~~ 346 (463)
.....++++++.
T Consensus 287 ~~~~~~~~~~~~ 298 (359)
T TIGR00912 287 IAVKGLSKLFKK 298 (359)
T ss_pred HHHHHHHHHhCC
Confidence 677777777643
No 33
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.36 E-value=2.3e-09 Score=110.33 Aligned_cols=241 Identities=12% Similarity=0.096 Sum_probs=148.7
Q ss_pred ccchHHHHHHHHHhhccccchhhHH-HHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHH
Q 012458 26 RTGTLWTAVAHIITGVIGSGVLSLA-WSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDM 104 (463)
Q Consensus 26 ~~~s~~~a~~~l~~~~iG~GiL~LP-~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~~~ 104 (463)
|+.+.++..+..++.++|+|++..| .+.+++|-...++..++.+++.+....-+.|...+.+...| .|.+.+++
T Consensus 2 r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG-----~~~~~~~~ 76 (478)
T TIGR00913 2 KSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSG-----SFATYASR 76 (478)
T ss_pred CCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC-----CHHHHHHH
Confidence 5678888999999999999999875 55667774433566777777777777777887665432222 67788899
Q ss_pred HcccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCCccchhh
Q 012458 105 CLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQS 184 (463)
Q Consensus 105 ~~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~ 184 (463)
.+|+...+++.....+.....+.......+..+..+.+ ......|..+..+ ++-+...+..|..+.
T Consensus 77 ~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~-~~~~in~~gv~~~~~ 142 (478)
T TIGR00913 77 FVDPAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTD-------------KVNPAVWIAIFYV-FIVIINLFGVKGYGE 142 (478)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------------CCCHHHHHHHHHH-HHHHHHHhcchHHHH
Confidence 99999888888877777666666666666665543211 0112223322222 222233344555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc--cc------ccCCCCchhHHHHHHHHHHHHHHhhcccceeehhhhhh
Q 012458 185 LSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMG--SF------SGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDT 256 (463)
Q Consensus 185 ~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~~------~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~ 256 (463)
++......-+...+..++..+.....+.+.+. .. .++++......+.++..++....|+|.+-.......+|
T Consensus 143 ~~~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E 222 (478)
T TIGR00913 143 AEFWFSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGE 222 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHh
Confidence 55443322222112112222222221111110 00 11111100112556778888999999999999999999
Q ss_pred cCCCCccccchhhhhHHHHHHHHHHHHHHhhh
Q 012458 257 LKSPPPANQTMKKASTMSIITTTIFYLFCGGF 288 (463)
Q Consensus 257 m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~ 288 (463)
+||| +|+.+|++..+..++.++|......
T Consensus 223 ~knP---~r~iPrai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 223 AANP---RKSIPRAAKRTFWRILVFYILTLFL 251 (478)
T ss_pred hcCh---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998 6899999999999999999987544
No 34
>PRK10836 lysine transporter; Provisional
Probab=99.31 E-value=6.6e-09 Score=107.00 Aligned_cols=247 Identities=14% Similarity=0.112 Sum_probs=136.2
Q ss_pred CCccccchHHHHHHHHHhhccccchhhHHH-HHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHH
Q 012458 22 PFIKRTGTLWTAVAHIITGVIGSGVLSLAW-SMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLE 100 (463)
Q Consensus 22 ~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~-~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~ 100 (463)
++.+|+.+.++..+..+++++|+|++.+|. +.+++|-...++..++.++++.....-+.|...+. |+.| ....
T Consensus 11 ~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~-P~sG-----g~y~ 84 (489)
T PRK10836 11 PGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYM-PVSG-----SFAT 84 (489)
T ss_pred ccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCC-----CHHH
Confidence 345677899999999999999999999996 56677764467778888888888888888876654 3334 4455
Q ss_pred HHHHHcccccchhhHHHHHHHHHhHHHHHHHHHHhh-HHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCCc
Q 012458 101 AVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAIS-MRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDF 179 (463)
Q Consensus 101 l~~~~~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~-l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l 179 (463)
.+++.+|+..+.++.....+. +..+.+......+. +..+. + ......+..+..++ +-.......
T Consensus 85 y~~~~~g~~~gf~~Gw~~~~~-~~~~~a~~~~a~~~~~~~~~-----~--------~~~~~~~~~~~~~~-~~~lN~~gv 149 (489)
T PRK10836 85 YGQNYVEEGFGFALGWNYWYN-WAVTIAVDLVAAQLVMSWWF-----P--------DTPGWIWSALFLGV-IFLLNYISV 149 (489)
T ss_pred HHHHHcChHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhcC-----C--------CCchHHHHHHHHHH-HHHHHHHcc
Confidence 556778877766665554432 22222222222221 21111 0 01111122222221 112222233
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHH--HhcCCccccccccCCCC-ch-hHHHHHHHHHHHHHHhhcccceeehhhhh
Q 012458 180 HNIQSLSVIAAVMSFAYSFIGFGLGVAK--VIGNGFVMGSFSGVSTT-TS-IEKMWLVAQALGDIAFAYPYSLILIEIQD 255 (463)
Q Consensus 180 ~~l~~~s~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~faf~~~~~~~~i~~ 255 (463)
+..+..+....+.-+...+..++..+.. ....+..+....++.+. .+ ...+..++.+.....|+|.+-..+....+
T Consensus 150 ~~~~~~~~~~~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~ 229 (489)
T PRK10836 150 RGFGEAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAG 229 (489)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 3333333222221111111111111111 11111100011111110 11 11234455556666799999999999999
Q ss_pred hcCCCCccccchhhhhHHHHHHHHHHHHHHhhhhhhh
Q 012458 256 TLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAA 292 (463)
Q Consensus 256 ~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~ 292 (463)
|+||| +|+.+|++..+...+.++|......-...
T Consensus 230 E~knP---~r~iPrAi~~~~~~v~~~Yvl~~~~~~~~ 263 (489)
T PRK10836 230 ESEDP---AKNIPRAVRQVFWRILLFYVFAILIISLI 263 (489)
T ss_pred HhcCH---HHHHHHHHHHHHHHHHHHHHHHHHHHhee
Confidence 99998 68999999999999999999776554333
No 35
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.30 E-value=2e-09 Score=111.32 Aligned_cols=247 Identities=15% Similarity=0.111 Sum_probs=140.1
Q ss_pred CccccchHHHHHHHHHhhccccchhhHHHH-HHHhChh-HHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHH
Q 012458 23 FIKRTGTLWTAVAHIITGVIGSGVLSLAWS-MAQLGWI-AGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLE 100 (463)
Q Consensus 23 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~~-f~~~G~~-~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~ 100 (463)
+.+|+-+.++.....+++++|+|++..|.. .+++|-. ..++..++.+++.........|..... |+.| ....
T Consensus 39 ~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~-P~sG-----G~y~ 112 (501)
T TIGR00911 39 ALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTI-PKSG-----GEYN 112 (501)
T ss_pred ccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCC-----chhh
Confidence 446778999999999999999999999876 4556643 123444566666666777777766553 3333 2333
Q ss_pred HHHHHcccccchhhHHHHHH-HHHhHHHHHHHHHHhhHHH-HHhhcccccCCCCcccccccchhHHHH--HHHHHHhhcC
Q 012458 101 AVDMCLGKTNAWACSFFVHV-GLYGTAIAYTVTSAISMRA-IQKSNCYHREGHEAACEYSDTYYMLIF--GAVQLILSQA 176 (463)
Q Consensus 101 l~~~~~G~~g~~~~~~~~~~-~~~g~~~~y~i~~~~~l~~-i~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~~pl~~~ 176 (463)
-.++.+||...++....... ...+.+..+....++.+.+ +.+. . ..+.....++. .+.+.-....
T Consensus 113 ~~~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~-----~------~~~~~~~~~i~~~~i~~~~~ln~ 181 (501)
T TIGR00911 113 YILEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPD-----C------EVPEWAIRLVAVLCVLLLTLVNC 181 (501)
T ss_pred hHHhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----C------CCchHHHHHHHHHHHHHHHHHHH
Confidence 44668998877665543322 1122333344444443321 2111 0 01111111111 1112222333
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc-cCCCCchhHHHHHHHHHHHHHHhhcccceeehhhhh
Q 012458 177 PDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFS-GVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQD 255 (463)
Q Consensus 177 ~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~ 255 (463)
+..+...+++.+.....+...++.++..+.....++..+.+.. .+++. .....++..++....|+|.+-..+....+
T Consensus 182 ~Gvk~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~--~~~~~~~~~a~~~~~~af~G~e~~~~~a~ 259 (501)
T TIGR00911 182 LSVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGT--ETSAGGIVLAFYSGIWAYGGWNYLNFVTE 259 (501)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCC--CCcHHHHHHHHHHHHHHHHhHHHHhhhHH
Confidence 4455555555555444433222222233332222211111110 11111 12345677788999999999999999999
Q ss_pred hcCCCCccccchhhhhHHHHHHHHHHHHHHhhhhhh
Q 012458 256 TLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYA 291 (463)
Q Consensus 256 ~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~ 291 (463)
|+||| +|+.+|++..+..++.++|.+....-..
T Consensus 260 E~knP---~r~iPrAi~~s~~~v~~~Y~l~~~a~~~ 292 (501)
T TIGR00911 260 EVKNP---YRTLPIAIIISMPIVTFIYVLTNIAYFT 292 (501)
T ss_pred HhcCc---hhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99998 6899999999999999999988655433
No 36
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.30 E-value=3.2e-09 Score=115.86 Aligned_cols=249 Identities=16% Similarity=0.062 Sum_probs=152.6
Q ss_pred cccchHHHHHHHH-Hhhccccchhh-HHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHH
Q 012458 25 KRTGTLWTAVAHI-ITGVIGSGVLS-LAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAV 102 (463)
Q Consensus 25 ~~~~s~~~a~~~l-~~~~iG~GiL~-LP~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~ 102 (463)
.++-++++.++.- +.+++|+|+.- +++...++|...+++..++.++++..++.-+.+......++.| .-....
T Consensus 75 ~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aG-----G~Y~yi 149 (953)
T TIGR00930 75 AVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGG-----GAYYLI 149 (953)
T ss_pred CcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc-----HHHHHH
Confidence 4456777777777 99999999876 6788889998888899999999999999888886654333334 223345
Q ss_pred HHHcccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCCccch
Q 012458 103 DMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNI 182 (463)
Q Consensus 103 ~~~~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l 182 (463)
++.+|+.....+.+...+.+...+..|.+..++.+..+++..+..... ......+.+.++..+++..+.+ ...
T Consensus 150 sralGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~---~~~~~~~iia~i~l~ll~~In~----~Gv 222 (953)
T TIGR00930 150 SRSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMV---DPINDIRIYGTVTVVVLLGISF----AGM 222 (953)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc---CccccchHHHHHHHHHHHHHHH----hhH
Confidence 788999888888888888788888899998888888876532110000 0001122222222222222222 333
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cccccccc-----CCC-C-chhHHHH-HHHHHHHHHHhhcccceeehhh
Q 012458 183 QSLSVIAAVMSFAYSFIGFGLGVAKVIGNG-FVMGSFSG-----VST-T-TSIEKMW-LVAQALGDIAFAYPYSLILIEI 253 (463)
Q Consensus 183 ~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~-----~~~-~-~~~~~~~-~~~~~~~~~~faf~~~~~~~~i 253 (463)
++.+.+..++.+...+.++...+.-..... .......+ +.+ . +.+.... +++..++++.+||.+......+
T Consensus 223 k~~ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~ 302 (953)
T TIGR00930 223 EWENKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANI 302 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444333211111111110000000 00000000 000 0 0111112 2667888888899999999999
Q ss_pred hhhcCCCCccccchhhhhHHHHHHHHHHHHHHhhh
Q 012458 254 QDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF 288 (463)
Q Consensus 254 ~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~ 288 (463)
..|+||| ++++++....+..+++++|+++.++
T Consensus 303 sgElKnP---~r~IPratl~ai~i~~vlYllv~~~ 334 (953)
T TIGR00930 303 SGDLKDP---QKAIPKGTLLAILTTTVVYLGSVVL 334 (953)
T ss_pred HHhccCh---hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998 6899999999999999999988764
No 37
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.29 E-value=1.7e-09 Score=110.00 Aligned_cols=238 Identities=13% Similarity=0.020 Sum_probs=143.0
Q ss_pred ccccchHHHHHHHHHhhccccchhhHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHH
Q 012458 24 IKRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVD 103 (463)
Q Consensus 24 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~~ 103 (463)
.+|+-+.++.....++.++|....+.+.+++..|+..-++..++.+++.......+.|...+. |..| .....++
T Consensus 5 l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~-P~~G-----g~y~~~~ 78 (442)
T TIGR00908 5 LKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMI-PTAG-----GGYGFAR 78 (442)
T ss_pred hhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCC-----CHHHHHH
Confidence 466788888888888888885556678888999986545555666666666666677766543 3333 3445668
Q ss_pred HHcccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCCccchh
Q 012458 104 MCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQ 183 (463)
Q Consensus 104 ~~~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~ 183 (463)
+.+||...++......+.......++....++.+..+++. .....+.+++..+ +-+...+..+..+
T Consensus 79 ~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~-------------~~~~~~~~~~~~~-~~~ln~~g~~~~~ 144 (442)
T TIGR00908 79 RAFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPV-------------GPGWLAALVFYIV-FIGINILGVGEAA 144 (442)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------CchhHHHHHHHHH-HHHHHHHHHHHHH
Confidence 8999998888888877777777777777778877665432 1111122211111 1122222334444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCch--hHHHHHHHHHHHHHHhhcccceeehhhhhhcCCCC
Q 012458 184 SLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTS--IEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPP 261 (463)
Q Consensus 184 ~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~ 261 (463)
+++.+..+..+...++ .......+.+..+.......+.+. ...+.+++.++....|+|.+...+....+|+|||
T Consensus 145 ~i~~~~~~~~~~~l~i---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P- 220 (442)
T TIGR00908 145 KLEFVVTAVAIIALGV---FIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNP- 220 (442)
T ss_pred hHHHHHHHHHHHHHHH---HHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-
Confidence 4443332222211111 111100110100000000000011 1123467788888999999999999999999998
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHhh
Q 012458 262 PANQTMKKASTMSIITTTIFYLFCGG 287 (463)
Q Consensus 262 ~~~~~~~~~~~~a~~~~~~~y~~~g~ 287 (463)
+|+.+|++..+..++.++|...-.
T Consensus 221 --~r~iprai~~s~~~~~~~~~~~~~ 244 (442)
T TIGR00908 221 --KRDIPRGLIGAILTLLALAAGILV 244 (442)
T ss_pred --ccccCHHHHHHHHHHHHHHHHHHH
Confidence 688999999999999888886644
No 38
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.27 E-value=4.3e-09 Score=106.68 Aligned_cols=291 Identities=16% Similarity=0.151 Sum_probs=172.6
Q ss_pred hHHHHHHHHHhhccccchhhHHHHHHHhChhHHHHHHHHHHHHH-HHHHHHHHHcccCCCCCCCCCccccHHHHHHHHcc
Q 012458 29 TLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVT-LFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLG 107 (463)
Q Consensus 29 s~~~a~~~l~~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~s-~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~~~~~G 107 (463)
|+++++...+++++|+|+...| ...+.|.. .++..++.+.+. ........|..++ .|+.| ....-.++.+|
T Consensus 2 ~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~-~p~~G-----G~y~~~~~~~g 73 (426)
T PF13520_consen 2 GLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSA-YPSAG-----GIYVWVSRAFG 73 (426)
T ss_dssp -HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTT-TTSST-----THHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhcc-CCCcC-----eeeehhhhccc
Confidence 6788999999999999999999 77777765 555555555544 4556666676554 33333 55567788899
Q ss_pred cccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhH-HHHHHHHHHhhcCCCccchhhHH
Q 012458 108 KTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYM-LIFGAVQLILSQAPDFHNIQSLS 186 (463)
Q Consensus 108 ~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~pl~~~~~l~~l~~~s 186 (463)
|+..++......+.......++.....+.+...+.. + ........+. .+..++..-....+..|..++++
T Consensus 74 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~ 144 (426)
T PF13520_consen 74 PFWGFIVGWLYWVAYILSLASVASSFASYLLSLFGP-----D----LNPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQ 144 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTG-----G----GTCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred ccchhcccceeEEEeeccccccccchhhhhhhcccc-----c----cccccchheeeeecccccceEeeechhhhhhhhh
Confidence 999988888887777777777776666666444321 0 0001111111 12222223333334455666666
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHhcCCcccc--cc-ccCCCCchhHHHHHHHHHHHHHHhhcccceeehhhhhhcCCCCc
Q 012458 187 VIAAVMSF-AYSFIGFGLGVAKVIGNGFVMG--SF-SGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPP 262 (463)
Q Consensus 187 ~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~ 262 (463)
....+..+ ...++.++..+.....+..... .. +..++ . +...+.+++...|+|.+-.......+|+||
T Consensus 145 ~~~~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~--- 216 (426)
T PF13520_consen 145 NILTVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPS--G---WPGFLAGFSVAFFAFSGFEAIASLAEENKN--- 216 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSCS--S---SSHHHHHHHHHGGGGTTTTHHHHGGGGSSS---
T ss_pred hhhhhhhhhhhhhhheeEEEeeecccccccccccccccCCc--c---ccchhhHHHHHHhhcccccccccccccccc---
Confidence 55555544 2222222233332222111100 00 11111 1 113578889999999999999999999774
Q ss_pred cccchhhhhHHHHHHHHHHHHHHhhhhhhhccCccc---ccc---cccc-cccCChHHHHHHHHHHHHHHHhhhhccccc
Q 012458 263 ANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTP---GNL---LTGF-GFYEPYWLIDLANAFIVIHLVGGYQVYSQP 335 (463)
Q Consensus 263 ~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~~~---~~i---l~n~-~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p 335 (463)
|+.+|++..+..++.++|......-....+++.. ++. ...+ .....++...+..+...+..+.+.......
T Consensus 217 --k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 294 (426)
T PF13520_consen 217 --KTIPRAIIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFG 294 (426)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --hhheeecccchhHHHHHHhhhhheeeecccchhhhcccccccccchhhccccccccccccccccccccccccchhhcc
Confidence 7899999999999999999987776665544321 121 1111 001234666777777777777777766666
Q ss_pred hHHHHHHHHHh
Q 012458 336 IFAHFEKWICE 346 (463)
Q Consensus 336 ~~~~~~~~~~~ 346 (463)
..+.+...-.+
T Consensus 295 ~sR~l~~~a~d 305 (426)
T PF13520_consen 295 ASRLLYAMARD 305 (426)
T ss_dssp HHHHHHHHHHT
T ss_pred hhhcccccccc
Confidence 66666665543
No 39
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.26 E-value=8.1e-09 Score=105.18 Aligned_cols=242 Identities=12% Similarity=0.148 Sum_probs=139.5
Q ss_pred ccccchHHHHHHHHHhhccccchhhHHHHH-HHhChh-HHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHH
Q 012458 24 IKRTGTLWTAVAHIITGVIGSGVLSLAWSM-AQLGWI-AGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEA 101 (463)
Q Consensus 24 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~~f-~~~G~~-~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l 101 (463)
.+|+.+.++.....++.++|+|++..|... ...|-. ..++..++.+++.........|..... |+.| ..+.|.
T Consensus 6 L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~-P~~G--G~y~y~-- 80 (445)
T PRK11357 6 LQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAY-PENG--ADYVYL-- 80 (445)
T ss_pred ccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCC--CceeeH--
Confidence 467889999999999999999999998864 455633 345566677777777777777766654 3334 345664
Q ss_pred HHHHcccccchhhHHHHHH-HHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCCcc
Q 012458 102 VDMCLGKTNAWACSFFVHV-GLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFH 180 (463)
Q Consensus 102 ~~~~~G~~g~~~~~~~~~~-~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~ 180 (463)
++.+||...++....... ..-.....+....++.+....+. + .... ....+.....+-....+..+
T Consensus 81 -~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~-----~------~~~~-~~~~~~~~~~~~~ln~~gv~ 147 (445)
T PRK11357 81 -KNAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTPI-----D------PLLG-KFIAAGLIIAFMLLHLRSVE 147 (445)
T ss_pred -HHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----c------hHHH-HHHHHHHHHHHHHHHHhhhh
Confidence 577898877666554332 22223334444444444332110 0 0000 11111111122222334445
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCchhHHHHHHHHHHHHHHhhcccceeehhhhhhcCCC
Q 012458 181 NIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSP 260 (463)
Q Consensus 181 ~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p 260 (463)
....++.+..+..+...+++++..+.. ..+...+...+ .+ ......+.++..++....|+|.+-.......+|+|||
T Consensus 148 ~~~~v~~~~~~~~~~~l~~~ii~g~~~-~~~~~~~~~~~-~~-~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P 224 (445)
T PRK11357 148 GGAAFQTLITIAKIIPFTIVIGLGIFW-FKAENFAAPTT-TA-IGATGSFMALLAGISATSWSYTGMASICYMTGEIKNP 224 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCccccCCCc-cc-ccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCc
Confidence 455555544443332222222222221 11111110000 00 0111124567778889999999999999999999998
Q ss_pred CccccchhhhhHHHHHHHHHHHHHHhhhh
Q 012458 261 PPANQTMKKASTMSIITTTIFYLFCGGFG 289 (463)
Q Consensus 261 ~~~~~~~~~~~~~a~~~~~~~y~~~g~~g 289 (463)
+|+.+|++..+..++.++|.+.....
T Consensus 225 ---~r~iP~Ai~~~~~i~~~~Y~l~~~~~ 250 (445)
T PRK11357 225 ---GKTMPRALIGSCLLVLVLYTLLALVI 250 (445)
T ss_pred ---cccchHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999998776643
No 40
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.21 E-value=1.4e-08 Score=103.24 Aligned_cols=347 Identities=14% Similarity=0.086 Sum_probs=188.1
Q ss_pred HhhccccchhhHHH-HHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHHHcccccchhhHH
Q 012458 38 ITGVIGSGVLSLAW-SMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWACSF 116 (463)
Q Consensus 38 ~~~~iG~GiL~LP~-~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~g~~~~~~ 116 (463)
+++++|+|++-.|. +.++.|. ..++..++.+++.........|...+. |+.| ...+.+++.+||....++..
T Consensus 4 ig~~IGsGif~~~g~~~~~aG~-~~ll~~~i~gi~~~~~al~~aEL~s~~-P~~G-----g~y~y~~~~~G~~~gf~~gw 76 (446)
T PRK10197 4 IAGVIGASLFVGSSVAIAEAGP-AVLLAYLFAGLLVVMIMRMLAEMAVAT-PDTG-----SFSTYADKAIGRWAGYTIGW 76 (446)
T ss_pred ecchhHhHHHHHhHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCC-----CHHHHHHHHcChHHHHHHHH
Confidence 57899999999987 6778886 477788888888888888888876553 3333 56677789999998888887
Q ss_pred HHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHH
Q 012458 117 FVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAY 196 (463)
Q Consensus 117 ~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~ 196 (463)
...+.....+.......+..+..+.+ ......+.++..+ ++-+...+..|..+.++......-+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~l~-~~~~lN~~gv~~~~~i~~~~~~~ki~~ 142 (446)
T PRK10197 77 LYWWFWVLVIPLEANIAAMILHSWVP-------------GIPIWLFSLVITL-ALTGSNLLSVKNYGEFEFWLALCKVIA 142 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc-------------cCcHHHHHHHHHH-HHHHHHHHhhHHHhhhHHHHHHHHHHH
Confidence 77766555554444444443332211 0111111111111 122222334444444444444333322
Q ss_pred HHHHHHHHHHHHhcCCccc--ccc-ccCCCCc-hhHHHHHHHHHHHHHHhhcccceeehhhhhhcCCCCccccchhhhhH
Q 012458 197 SFIGFGLGVAKVIGNGFVM--GSF-SGVSTTT-SIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKAST 272 (463)
Q Consensus 197 ~~i~~~~~~~~~~~~~~~~--~~~-~~~~~~~-~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~ 272 (463)
.+..++..+.......+.. ... +..++.. ..+.+.++..++....|+|.+-..+.....|+||| +|+.+|++.
T Consensus 143 li~~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP---~r~iPrai~ 219 (446)
T PRK10197 143 ILAFIFLGAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTP---EKHIVRATN 219 (446)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcCh---hhhHHHHHH
Confidence 2222222221111111000 000 0001000 01234578899999999999999999999999998 688999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhccCcccc--------cccccccccCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHH
Q 012458 273 MSIITTTIFYLFCGGFGYAAFGDNTPG--------NLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWI 344 (463)
Q Consensus 273 ~a~~~~~~~y~~~g~~gy~~fg~~~~~--------~il~n~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~ 344 (463)
.+.....++|....+.--.....+..+ ...+... .++...+.++...+..+.+..-..+...+.+...-
T Consensus 220 ~~~~~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g---~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~a 296 (446)
T PRK10197 220 SVIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLN---IPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLS 296 (446)
T ss_pred HHHHHHHHHHHHHHHHHheecCcCcccccccCcHHHHHHHcC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999997655533222211111 1122222 34455666666666666666555554444444332
Q ss_pred Hhh-cCCCCccccccccCCCCCCCcCCchhhHHHHHH-HHHHHHHHHhhCC--chHHHHHHhhhhhhhhhHhhhhhHHHH
Q 012458 345 CEK-FPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTV-YVVSVTAIAMSFP--YFNQVLGVIGGVIFWPLTIYFPVEMYF 420 (463)
Q Consensus 345 ~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~ia~~vp--~~~~v~~l~Ga~~~~~l~filP~l~~~ 420 (463)
.++ .|+ .+ .+.+ ++..+.+-++... ..+...+.....| .++.++++.+... .+.|+++++.++
T Consensus 297 rdg~lP~-~~-~~~~---------~~~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~--li~y~~~~~a~i 363 (446)
T PRK10197 297 RRGDAPA-VM-GKIN---------RSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIA--LLVYLVIAVSQL 363 (446)
T ss_pred cCCCcCH-HH-HhhC---------cCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 211 110 00 0000 1111333332222 2222222322233 3667777766655 488888888888
Q ss_pred HHhc
Q 012458 421 KQMN 424 (463)
Q Consensus 421 ~~~~ 424 (463)
+.||
T Consensus 364 ~lr~ 367 (446)
T PRK10197 364 RMRK 367 (446)
T ss_pred HHHH
Confidence 8654
No 41
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=99.21 E-value=7.9e-11 Score=101.06 Aligned_cols=221 Identities=14% Similarity=0.262 Sum_probs=143.9
Q ss_pred HHHHHHHHHhhccccchhhHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCC-------------C--------
Q 012458 30 LWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPD-------------P-------- 88 (463)
Q Consensus 30 ~~~a~~~l~~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~-------------~-------- 88 (463)
-.-...-+.|-++|+|.|+||.+|+.+||.+++.++.+.+++++.+..+++++....+ .
T Consensus 14 q~vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~sta 93 (319)
T KOG3832|consen 14 QTVGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDESTA 93 (319)
T ss_pred hhhhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhcccccccc
Confidence 3345567789999999999999999999999999999999999999999988541100 0
Q ss_pred -----------------------CCCC------CccccHHHHHHHHcccccchhhHHHHHHHHHhHHHHHHHHHHhhHHH
Q 012458 89 -----------------------EYGP------GRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRA 139 (463)
Q Consensus 89 -----------------------~~~~------~~~~~y~~l~~~~~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~ 139 (463)
++|. .++...+|++...|.|.|--+..+++++++||...+|....-.+..+
T Consensus 94 sd~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnkvgln~fyf~iiiylfgdlaiyaaavpfs~m~ 173 (319)
T KOG3832|consen 94 SDDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVPFSAMN 173 (319)
T ss_pred CCCcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCchHhhh
Confidence 0000 02236788999999999999999999999999999999988888877
Q ss_pred HHhh-----cccccCC----CCccccc-------ccchhHHHHHHHH-HHhhcCCCccchhhHHHHHHHHHHHHHHHHHH
Q 012458 140 IQKS-----NCYHREG----HEAACEY-------SDTYYMLIFGAVQ-LILSQAPDFHNIQSLSVIAAVMSFAYSFIGFG 202 (463)
Q Consensus 140 i~~~-----~~~~~~~----~~~~~~~-------~~~~~~~i~~~~~-~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~ 202 (463)
+.-. .|..+.+ +.+.|+- .++++++|+.+++ +|+.+. ++++-+.+..+...+...-....+.
T Consensus 174 itcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf~-diqktk~iqiltslmrw~~~~~g~~ 252 (319)
T KOG3832|consen 174 ITCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTFA-DIQKTKHIQILTSLMRWAAFILGIS 252 (319)
T ss_pred hhhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeEe-ccccchhHHHHHHHHHHHhccchhh
Confidence 6532 1211111 1123321 2556666666554 466543 4555566665555554422111111
Q ss_pred HHHHHHhcCCccccccccCCCCchhHHHHHHHHHHHHHHhhcccceeehhhhhhcCC
Q 012458 203 LGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKS 259 (463)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~ 259 (463)
..--+.-++. . +..++....-++-..++..+|+|.+|++.|.....++.
T Consensus 253 l~tmqaeeda----a----~a~p~arc~cgfgkl~~~aly~~~a~cmapda~gagq~ 301 (319)
T KOG3832|consen 253 LATMQAEEDA----A----AAHPPARCFCGFGKLFGCALYAFMAHCMAPDAIGAGQT 301 (319)
T ss_pred hhhhhhcccc----c----ccCCccccccccccccchhhHHHHhhccCCCCCCCCee
Confidence 1111111111 1 11122223334446778899999999999999888874
No 42
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.20 E-value=2.1e-09 Score=106.16 Aligned_cols=364 Identities=13% Similarity=0.116 Sum_probs=212.7
Q ss_pred ccccchHHHHHHHHHhhccccchhhHHHHHHHhC--hhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHH
Q 012458 24 IKRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLG--WIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEA 101 (463)
Q Consensus 24 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~~f~~~G--~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l 101 (463)
.+||.+.+.++..++++++|+|+..-|....+-+ ...+++.-+++++++......-.|..... |+.| ..+.|
T Consensus 10 ~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~i-pksG--gd~ay--- 83 (479)
T KOG1287|consen 10 LKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSI-PKSG--GDYAY--- 83 (479)
T ss_pred ccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccc-cCCC--cchhh---
Confidence 4678899999999999999999999999976544 66677778888999999988888876543 2233 22333
Q ss_pred HHHHcccccchhhHHHHHHHHH-hHHHHHHHHHHhh-HHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCCc
Q 012458 102 VDMCLGKTNAWACSFFVHVGLY-GTAIAYTVTSAIS-MRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDF 179 (463)
Q Consensus 102 ~~~~~G~~g~~~~~~~~~~~~~-g~~~~y~i~~~~~-l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l 179 (463)
..++||+.........-.+..+ ..+..+.+..++. +++.++ .|. ..+ ...-..+..++-+....|.
T Consensus 84 i~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp-~c~----------~p~-~~~~lla~~~l~~lt~~n~ 151 (479)
T KOG1287|consen 84 ISEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFP-LCD----------VPR-VASKLLAAALLVLLTLINS 151 (479)
T ss_pred HHHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCC-CCC----------Cch-HHHHHHHHHHHHHHHHHhh
Confidence 3567888665444333333333 3446677777776 666554 232 222 2233334444444455566
Q ss_pred cchhhHHHHHHHHHHHH---HHHHHHHHHHHHhcCCccccccccCCCCchhHHHHHHHHHHHHHHhhcccceeehhhhhh
Q 012458 180 HNIQSLSVIAAVMSFAY---SFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDT 256 (463)
Q Consensus 180 ~~l~~~s~~~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~ 256 (463)
...++.+.+..+.+..= +.++++..++....++..+.....+. .+..+.-++..++-.-.|||.+=..+-.+.+|
T Consensus 152 ~~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~--g~~~~~g~i~lafysglfa~~GWd~lN~vteE 229 (479)
T KOG1287|consen 152 FSVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFE--GSDTDVGNIALAFYSGLFAFSGWDYLNYVTEE 229 (479)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccc--cCcCchHHHHHHHHHhhhcccCchhhccchHh
Confidence 66777777666665532 22222233343332221111100011 11123345677888889999999999999999
Q ss_pred cCCCCccccchhhhhHHHHHHHHHHHHHHhhhhhhhccCcc--c-ccccccccccCChHHHHHHHHHHHHHHHhhhhccc
Q 012458 257 LKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT--P-GNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYS 333 (463)
Q Consensus 257 m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~~--~-~~il~n~~~~~~~~~~~~~~~~~~i~~~~s~pl~~ 333 (463)
+||| +|+++++...++.++++.|.++=+..+..-..+. . +-+-..+.+.--..+.....++..++...+.-..+
T Consensus 230 iknP---~ktLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~~~ip~~ValS~~G~~n~~i 306 (479)
T KOG1287|consen 230 IKNP---RRTLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFAWAIPFSVALSLIGSLNSVI 306 (479)
T ss_pred hcCc---cccchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHH
Confidence 9999 7999999999999999999998877665543221 1 11111121100111225555566666666655444
Q ss_pred cchHHHHHHHHHhhcCCCCccccccccCCCCCC---C-cCCchhhHHHHHHHHHHHHHHHhhCCchHHHHHHhhhhhhhh
Q 012458 334 QPIFAHFEKWICEKFPENGFLNNEFFLKPPLMP---A-FRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWP 409 (463)
Q Consensus 334 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---~-~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~v~~l~Ga~~~~~ 409 (463)
+...+.+...-.+. .+|..= + ++.++. ..........++..+..|+..+++..+=.-...
T Consensus 307 fs~SR~~~~~areG-------------~LP~~~s~i~~~~~TP~---~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~ 370 (479)
T KOG1287|consen 307 FSSSRLFYAGAREG-------------HLPAFFSMISVRRFTPR---PALLFSGLLSIVLSLIGDFDQLINYVSFAYWLF 370 (479)
T ss_pred HHHHHHHHHHHHcc-------------CccHHHHhhcCCCCCCh---HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 44433333222111 011100 0 000111 122223334445555668888888888777767
Q ss_pred hHhhhhhHHHHHHhccc
Q 012458 410 LTIYFPVEMYFKQMNIE 426 (463)
Q Consensus 410 l~filP~l~~~~~~~~~ 426 (463)
..+.+=++++++.++++
T Consensus 371 ~~l~~~gll~lR~k~p~ 387 (479)
T KOG1287|consen 371 RGLSMAGLLWLRWKHPP 387 (479)
T ss_pred HHHHHHHHHHHHhhCCC
Confidence 77778889999876654
No 43
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.18 E-value=9.2e-09 Score=100.13 Aligned_cols=362 Identities=15% Similarity=0.130 Sum_probs=216.6
Q ss_pred ccccchHHHHHHHHHhhccccch-hhHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHH
Q 012458 24 IKRTGTLWTAVAHIITGVIGSGV-LSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAV 102 (463)
Q Consensus 24 ~~~~~s~~~a~~~l~~~~iG~Gi-L~LP~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~ 102 (463)
.+|..+..+--+.-+...||+|. |+-..+.+.+|-- -++.-++++++.+.=+..|-|...+ +|. ..|+.+.+
T Consensus 11 l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPS-vlLaY~I~G~~~f~iMRaLGEm~~~-~p~-----~gSF~~~a 83 (462)
T COG1113 11 LKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPS-VLLAYLIAGIFVFLIMRALGEMLVA-NPV-----SGSFSDYA 83 (462)
T ss_pred hhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcH-HHHHHHHHHHHHHHHHHHHHHHHHh-CCC-----CCcHHHHH
Confidence 35566777888888999999995 4567778888853 2344556677777777777776554 333 34999999
Q ss_pred HHHcccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHH--HHHhhcCCCcc
Q 012458 103 DMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAV--QLILSQAPDFH 180 (463)
Q Consensus 103 ~~~~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~pl~~~~~l~ 180 (463)
++.+|++..++..-.....-...+++.+..++..++.++++ .+.+.+.++..++ .+-+...|...
T Consensus 84 ~~~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~-------------vP~Wv~al~~~~l~~~~NL~sVk~FG 150 (462)
T COG1113 84 RKYLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPD-------------VPQWVFALAAVVLLLAVNLISVKVFG 150 (462)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------------CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998764 1233333333333 23445556666
Q ss_pred chhh-HHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCch--hHHHHHHHHHHHHHHhhcccceeehhhhhhc
Q 012458 181 NIQS-LSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTS--IEKMWLVAQALGDIAFAYPYSLILIEIQDTL 257 (463)
Q Consensus 181 ~l~~-~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m 257 (463)
++.+ ++.+=++.++.+.++.. ..+...+.++.......+..+... .+.+.+++.++-+.+|||.+.-.+--...|-
T Consensus 151 E~EfWfAlIKV~aIi~~Iv~G~-~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et 229 (462)
T COG1113 151 ELEFWFALIKVAAIIAFIVVGI-VLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEA 229 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhh
Confidence 6664 34444443332222222 122222322221111222211111 2346788899999999999999999999999
Q ss_pred CCCCccccchhhhhHHHHHHHHHHHH-----HHhhhhhhhccCcccccccccccccCChHHHHHHHHHHHHHHHhhhhcc
Q 012458 258 KSPPPANQTMKKASTMSIITTTIFYL-----FCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVY 332 (463)
Q Consensus 258 ~~p~~~~~~~~~~~~~a~~~~~~~y~-----~~g~~gy~~fg~~~~~~il~n~~~~~~~~~~~~~~~~~~i~~~~s~pl~ 332 (463)
||| +|..+|+..--..=..++|. ++.+.-+-.++++. ++...-|...+-.+...+.|.-...+.+.+.---
T Consensus 230 ~dP---~k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~-SPFV~~f~~iGi~~Aa~i~N~VVLtAa~S~~NSg 305 (462)
T COG1113 230 KDP---EKAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDG-SPFVTVFSLIGIPFAAGIMNFVVLTAALSALNSG 305 (462)
T ss_pred cCh---hhHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCC-CcHHHHHHHcCCcccccceeEEEeechhhccccc
Confidence 999 57777877766666666665 33333333444432 3443344322234445555555555555555555
Q ss_pred ccchHHHHHHHHHhhc-CC--CCccccccccCCCCCCCcCCchhhHHHHHHHHHHHHHHHhhCCc--hHHHHHHhhhhhh
Q 012458 333 SQPIFAHFEKWICEKF-PE--NGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPY--FNQVLGVIGGVIF 407 (463)
Q Consensus 333 ~~p~~~~~~~~~~~~~-~~--~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~--~~~v~~l~Ga~~~ 407 (463)
++..-+.+..+-.+.. |+ .|.+++ .+| +.-.+.......++.++.+..|. |+.+.+..+...
T Consensus 306 lystsRmL~~la~~g~APk~~~klsk~----gVP--------~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~~- 372 (462)
T COG1113 306 LYSTSRMLYSLAKQGDAPKAFAKLSKR----GVP--------VNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLGL- 372 (462)
T ss_pred ccccchHHHHHhhcCcccHhHhhcccc----CCC--------HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHH-
Confidence 5555555555432210 11 111111 122 44455666777789999999993 444444444333
Q ss_pred hhhHhhhhhHHHHHHhc
Q 012458 408 WPLTIYFPVEMYFKQMN 424 (463)
Q Consensus 408 ~~l~filP~l~~~~~~~ 424 (463)
.....+=.+.|+|.||
T Consensus 373 -l~vW~~I~~s~l~~rk 388 (462)
T COG1113 373 -LFVWLMILLSQLKLRK 388 (462)
T ss_pred -HHHHHHHHHHHHHHHh
Confidence 2333344566777665
No 44
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.10 E-value=1e-07 Score=97.71 Aligned_cols=286 Identities=17% Similarity=0.171 Sum_probs=168.3
Q ss_pred CccccchHHH-HHHHHHhhccccchhhHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHH
Q 012458 23 FIKRTGTLWT-AVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEA 101 (463)
Q Consensus 23 ~~~~~~s~~~-a~~~l~~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l 101 (463)
+++++.+.++ ......+.++|.|++.+|......+ ....+..++.+++.........|..++ .|+.| .+.+-
T Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~-~~~~~~~li~~~~~~~~a~~~~el~~~-~p~~G-----G~y~~ 81 (466)
T COG0531 9 ELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLA-PAAILAWLIAGIIILFLALSYAELSSA-IPSAG-----GAYAY 81 (466)
T ss_pred hcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCC-----Ceeee
Confidence 3455566666 7888889999999999999988776 222333344455555555666666553 34334 44555
Q ss_pred HHHHcccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHH--HHHhhcCCCc
Q 012458 102 VDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAV--QLILSQAPDF 179 (463)
Q Consensus 102 ~~~~~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~--~~pl~~~~~l 179 (463)
.++.+||+..+++.....+.......+......+.+..+.+... .. ..+...+..+..+. .+-+...+..
T Consensus 82 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~~~~ln~~G~ 153 (466)
T COG0531 82 AKRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPG-LL-------SIGPLLIILIALALIALLTLLNLRGI 153 (466)
T ss_pred hhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch-hh-------cCCchHHHHHHHHHHHHHHHHHHhhH
Confidence 68899998888888888888877777777777776666544210 00 00111222222222 2222333444
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCc-hhHHHHHHHHHHHHHHhhcccceeehhhhhhcC
Q 012458 180 HNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTT-SIEKMWLVAQALGDIAFAYPYSLILIEIQDTLK 258 (463)
Q Consensus 180 ~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~ 258 (463)
+.......+..+..+...++..+..+.....+. .+. ..+.. .......+..++....++|.+-....+..+|+|
T Consensus 154 ~~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~k 228 (466)
T COG0531 154 KASAKINSIITILKIIILLIFIILGLFAFGFSN---GNL--FAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVK 228 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc---ccc--CCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhc
Confidence 555555555555444333333333332222111 111 11111 111223677888999999999999999999999
Q ss_pred CCCccccchhhhhHHHHHHHHHHHHHHhhhhhhhccCc-cccc-----ccccccccCChHHHHHHHHHHHHHHHhhhhc
Q 012458 259 SPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDN-TPGN-----LLTGFGFYEPYWLIDLANAFIVIHLVGGYQV 331 (463)
Q Consensus 259 ~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~-~~~~-----il~n~~~~~~~~~~~~~~~~~~i~~~~s~pl 331 (463)
|| +|+.+|++..+..++.++|...........+++ .... .........+.+...+..+...+....+...
T Consensus 229 np---~r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~ 304 (466)
T COG0531 229 NP---KRTIPRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAILALLSLFGSLLA 304 (466)
T ss_pred Cc---cccccHHHHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHHcCccHHHHHHHHHHHHHHHHHHHH
Confidence 98 578999999999999999998888877766652 2111 1111110012355556666666666666533
No 45
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=98.99 E-value=1.6e-06 Score=89.67 Aligned_cols=251 Identities=12% Similarity=0.106 Sum_probs=128.9
Q ss_pred cccchHHHHHHHHHhhccccchhhHHHHHHHhChhHHHHHHHHHHHHHHH-HHHHHHHcccCCCCCCCCCccccHHHHHH
Q 012458 25 KRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLF-ATFLLCDCHRGPDPEYGPGRNRSYLEAVD 103 (463)
Q Consensus 25 ~~~~s~~~a~~~l~~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~s~~-t~~ll~~~~~~~~~~~~~~~~~~y~~l~~ 103 (463)
+|+.+.++..+..+++++|.+ .+|.++++.|.. +++..++.+.+... ......|.....+.+.| .-..-.+
T Consensus 6 ~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aG-----G~Y~w~~ 77 (496)
T PRK15238 6 KKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYS-AIPWYILSAILFFIPFALMMAEYGSAFKDEKG-----GIYSWMN 77 (496)
T ss_pred cCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-----cHHHHHH
Confidence 567899998888899999976 669889888874 55566555555433 44456666554322123 3444557
Q ss_pred HHcccccchhhHHHHHHHHHhHHHHHHHHHHh-hHHHHHhhcccccCCCCcccccccchhHHHHHHH---HHHhhcCCCc
Q 012458 104 MCLGKTNAWACSFFVHVGLYGTAIAYTVTSAI-SMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAV---QLILSQAPDF 179 (463)
Q Consensus 104 ~~~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~-~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~pl~~~~~l 179 (463)
+.+||+.+++...................... ....+... +..+... ....+......+.+++ ++-....|.+
T Consensus 78 ~~~G~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~a~~~~~~~t~vn~~g~ 154 (496)
T PRK15238 78 KSVGPKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGK--DTTQTWH-FLGLNSTQVVGILAVIWMILVTFVASKGI 154 (496)
T ss_pred HHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc--chhhhhh-hhcccchHHHHHHHHHHHHHHHHHHccch
Confidence 88999887665433222222111110000000 00001100 0000000 0001111111122222 2223445556
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHH-HHHHHhcCCcc--ccccccC-CCC-chhHHHHHHHHHHHHHHhhcccceeehhhh
Q 012458 180 HNIQSLSVIAAVMSFAYSFIGFGL-GVAKVIGNGFV--MGSFSGV-STT-TSIEKMWLVAQALGDIAFAYPYSLILIEIQ 254 (463)
Q Consensus 180 ~~l~~~s~~~~~~~~~~~~i~~~~-~~~~~~~~~~~--~~~~~~~-~~~-~~~~~~~~~~~~~~~~~faf~~~~~~~~i~ 254 (463)
+..+.++.++....+...++.++. .+.....+... +....++ +.. +.+....+...++....|+|.+-..+....
T Consensus 155 ~~~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a 234 (496)
T PRK15238 155 NKIAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGGLV 234 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHHHH
Confidence 666666655443332211111111 11111111111 0000111 000 111112456677788899999999999999
Q ss_pred hhcCCCCccccchhhhhHHHHHHHHHHHHHHhhhh
Q 012458 255 DTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFG 289 (463)
Q Consensus 255 ~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~g 289 (463)
+|+||| +|+.+|++..+...+.++|....+..
T Consensus 235 ~E~~~p---~~~~p~ai~~~~~~~~~~y~l~~~~~ 266 (496)
T PRK15238 235 DKTENP---EKNFPKGIIIAAIVISIGYSLAIFLW 266 (496)
T ss_pred HhccCC---CccccHHHHHHHHHHHHHHHHHHHHH
Confidence 999998 68999999999999999999765443
No 46
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=98.97 E-value=3.4e-06 Score=86.68 Aligned_cols=258 Identities=12% Similarity=-0.019 Sum_probs=136.9
Q ss_pred CccccchHHHHHHHHHhhc-cccchhhHHHH-HHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHH
Q 012458 23 FIKRTGTLWTAVAHIITGV-IGSGVLSLAWS-MAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLE 100 (463)
Q Consensus 23 ~~~~~~s~~~a~~~l~~~~-iG~GiL~LP~~-f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~ 100 (463)
+-+|+-+.++.+..-++.+ +|+|+...+.. ..++|- ..+...++.++.......-+.|...+. |..| ....
T Consensus 10 ~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp-~~~~~~li~~i~~l~~als~aEL~s~~-P~aG-----G~Y~ 82 (475)
T TIGR03428 10 QLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGP-AFFWTWPVVFVGQLLVALNFAELAARY-PISG-----AIYQ 82 (475)
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-HHHHHHHHHHHHHHHHHHHHHHHHhhC-CCCC-----CHHH
Confidence 4467788888877777664 88999887655 455665 456666677777777777777766553 3334 3334
Q ss_pred HHHHHcccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCccccccc--chhHHHHH-HHHHHhhcCC
Q 012458 101 AVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSD--TYYMLIFG-AVQLILSQAP 177 (463)
Q Consensus 101 l~~~~~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~--~~~~~i~~-~~~~pl~~~~ 177 (463)
-+++.+||...+++.....+................+..+.+....-..+. +...... ..+.+... ..+.-+...+
T Consensus 83 ~~~~~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~in~~ 161 (475)
T TIGR03428 83 WSRRMGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDP-TLTSPSGAANAVLLGSVLLVLTTVINCI 161 (475)
T ss_pred HHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCc-cccCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 457788998888877666665544443433333444433321100000000 0000001 11121111 1122222333
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc-cCCCCchhHHHHHHHHHHHHHHhhcccceeehhhhhh
Q 012458 178 DFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFS-GVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDT 256 (463)
Q Consensus 178 ~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~ 256 (463)
..|....++.+..+..+...+++++...... .+++ ..... ..++ ........+..+.....|+|.+-..+..+.+|
T Consensus 162 g~k~~~~i~~~~~~~~i~~l~~iii~~~~~~-~~~~-~~~f~~~~~~-~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE 238 (475)
T TIGR03428 162 GVEWMSRVNTIGVTCEIVGVLAVIGVLFTHA-QRGP-GVVFDTSVTG-ASPGYYGAFLVSGLMAAYVMVGFGSAGELSEE 238 (475)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCc-ceeeecCCCC-CCccHHHHHHHHHHHHHHHhcCcchHHHHHHH
Confidence 4455555555544443322222222222111 1111 00000 0000 00111234455666678999999999999999
Q ss_pred cCCCCccccchhhhhHHHHHHHHHHHHHHhhhhhhhcc
Q 012458 257 LKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFG 294 (463)
Q Consensus 257 m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg 294 (463)
+||| +|+.+|++..+..+..++|...-+......+
T Consensus 239 ~knP---~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~ 273 (475)
T TIGR03428 239 TKNP---RRVAPRTILTALSVSALGGGLMILGALMAAP 273 (475)
T ss_pred hcCc---chhhhHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999 6899999999999888766655544443333
No 47
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=98.92 E-value=1.8e-06 Score=89.04 Aligned_cols=250 Identities=11% Similarity=0.033 Sum_probs=125.4
Q ss_pred ccccchHHHHHHHHHhhccc--cchhh-HHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHH
Q 012458 24 IKRTGTLWTAVAHIITGVIG--SGVLS-LAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLE 100 (463)
Q Consensus 24 ~~~~~s~~~a~~~l~~~~iG--~GiL~-LP~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~ 100 (463)
.+|+-+.++.+..-+. ++| .|+.. .+.+..+.|-...++..++.+++......-+.|...+. |+.| ....
T Consensus 10 l~r~l~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~-P~~G-----g~y~ 82 (482)
T TIGR00907 10 LKREFSLWSIFGFAFS-ISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAY-PTSG-----GQYF 82 (482)
T ss_pred eecccchhHHHHHHHH-HHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhC-CCCc-----cHHH
Confidence 4566777776655555 344 45544 45567777776556677778888888887888876553 3334 3344
Q ss_pred HHHHHccc----ccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHH--HHHHhh
Q 012458 101 AVDMCLGK----TNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGA--VQLILS 174 (463)
Q Consensus 101 l~~~~~G~----~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~pl~ 174 (463)
-+++.+|+ ...+++.....+.....+.+.....++.+....... .+ +.. ...+.....++... .++-+.
T Consensus 83 ~~~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~-~~~---~~~~~~~~~~i~~~~~~~~~~i 157 (482)
T TIGR00907 83 WSAKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLT-TP-GRE---YIPTRWHIFGIMIGIHLIHALI 157 (482)
T ss_pred HHHHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC-CCC---ccccCchhhhhHHHHHHHHHHH
Confidence 44666664 444555554555555555555555555555543221 11 000 00111111222111 112222
Q ss_pred cCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-CccccccccCCCCc-hh-HHHHHHHHHHHHHHhhcccceeeh
Q 012458 175 QAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGN-GFVMGSFSGVSTTT-SI-EKMWLVAQALGDIAFAYPYSLILI 251 (463)
Q Consensus 175 ~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~faf~~~~~~~ 251 (463)
.....|.+...+.+..+..+...+++++..+.....+ +..+....++.+.+ .+ ...+....++....|+|.+-....
T Consensus 158 n~~g~k~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~ 237 (482)
T TIGR00907 158 NSLPTKWLPRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTA 237 (482)
T ss_pred HHhhHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcchhh
Confidence 2223344444443333322211111111111110000 00010111111111 10 112345555666789999999999
Q ss_pred hhhhhcCCCCccccchhhhhHHHHHHHHHHHHHHhhh
Q 012458 252 EIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF 288 (463)
Q Consensus 252 ~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~ 288 (463)
...+|+||| +|+.+|++..+..+..+++.+..+.
T Consensus 238 ~~a~E~knP---~r~iP~Ai~~s~~i~~~~~~~~~l~ 271 (482)
T TIGR00907 238 HMAEEIENP---EVVGPRAIIGAVAIGIVTGFCFNIV 271 (482)
T ss_pred HHHHhcCCh---hhhcCHHHHHHHHHHHHHHHHHHHH
Confidence 999999998 6899999999988877655444333
No 48
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=98.89 E-value=2.9e-07 Score=89.55 Aligned_cols=283 Identities=12% Similarity=0.083 Sum_probs=171.0
Q ss_pred cchHHHHHHHHHhhccccchhhHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHHHc
Q 012458 27 TGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCL 106 (463)
Q Consensus 27 ~~s~~~a~~~l~~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~~~~~ 106 (463)
|.|..|....+..+++|+|++.+|....+.+ --|.+..++.+........+..+..++. +..+..|..++.+
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~-~d~Wi~~ll~~~~~l~~~~l~~~l~~~~-------p~~~l~~~~~~~~ 72 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQA-GDAWISVLLGGLIGLLLALLIYYLLKRF-------PGKTLVEISEKLF 72 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCCHHHHHHHHh
Confidence 4577899999999999999999999976654 1222333333333444444444443332 3449999999999
Q ss_pred ccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHH-HHHHHHHHhhcCCCccchhhH
Q 012458 107 GKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYML-IFGAVQLILSQAPDFHNIQSL 185 (463)
Q Consensus 107 G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~pl~~~~~l~~l~~~ 185 (463)
||+.+.+..+...++.+..........++.++...-. ..+.|.+ ...+++.--...+.++.+.+.
T Consensus 73 Gk~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~lp--------------~TP~~~i~~~~ll~~~y~a~~G~e~i~R~ 138 (320)
T PF03845_consen 73 GKWLGKIINLLYILYFLLISALVLREFSEFIKTYLLP--------------ETPIWVIILLFLLVAAYAARKGIEVIARV 138 (320)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------cCCHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999989888888888888888877777777664321 1223333 233333334555667777775
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCchhHHHHHHHHHHHHHHhhcccceeehhhhhhcCCCCcccc
Q 012458 186 SVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQ 265 (463)
Q Consensus 186 s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~ 265 (463)
+.+.....+...+.. .....++. ++.+..+.. ..++.+.+.+.-...+.|.+-....-+...+++| +
T Consensus 139 ~~~~~~~~~i~~~~i----~~~~~~~~----~~~~l~P~~-~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~----~ 205 (320)
T PF03845_consen 139 AEILFPIFLILLLLI----LLLSIPNI----DWDNLLPVL-ESGIKPILKGSLVISFPFGGIEILLFLFPFVKDK----K 205 (320)
T ss_pred HHHHHHHHHHHHHHH----HHHhcccC----CHHHeeCcc-cCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc----h
Confidence 544444433222211 11111111 111111111 1234456666666667777777777777788876 8
Q ss_pred chhhhhHHHHHHHHHHHHHHhhhhhhhccCccccccc-------ccccccCC---hHHHHHHHHHHHHHHHhhhhccccc
Q 012458 266 TMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLL-------TGFGFYEP---YWLIDLANAFIVIHLVGGYQVYSQP 335 (463)
Q Consensus 266 ~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~il-------~n~~~~~~---~~~~~~~~~~~~i~~~~s~pl~~~p 335 (463)
+.+|....+..++.++|...-+.....||.+..++.. +..+ -+ +.+..+.-...........-+..+-
T Consensus 206 ~~~k~~~~~~~~~~~~~~~~~~~~i~vfG~~~~~~~~~P~~~~~~~i~--i~~fieRld~~~i~~w~~~~~~~~~~~~~~ 283 (320)
T PF03845_consen 206 KLKKSLLIAILISGLFLLFIIFITIGVFGPELAKKLTYPVLELARSIE--IGDFIERLDSIFILIWIIGIFIKISLYLYA 283 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHhceecHHHHHHHHhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999888888889875422211 1111 01 1222333444455555556666667
Q ss_pred hHHHHHHHHHh
Q 012458 336 IFAHFEKWICE 346 (463)
Q Consensus 336 ~~~~~~~~~~~ 346 (463)
..+.+.+.++.
T Consensus 284 ~~~~~~~~f~~ 294 (320)
T PF03845_consen 284 ASEGLSQLFKL 294 (320)
T ss_pred HHHHHHHHhCC
Confidence 77777777643
No 49
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=98.80 E-value=8.3e-06 Score=83.83 Aligned_cols=53 Identities=9% Similarity=0.042 Sum_probs=44.5
Q ss_pred HHHhhcccceeehhhhhhcCCCCccccchhhhhHHHHHHHHHHHHHHhhhhhhhcc
Q 012458 239 DIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFG 294 (463)
Q Consensus 239 ~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg 294 (463)
...|+|.+-..+....+|+||| +|+.+|++..+..++.++|....+.-...-+
T Consensus 202 ~~~~af~G~e~~~~~a~E~knP---~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~ 254 (474)
T TIGR03813 202 SIFLFYAGMEMNAVHVKDVDNP---DKNYPIAILIAALGTVLIFVLGTLAIAFIIP 254 (474)
T ss_pred HHHHHHhchhHhHHHHHhccCc---ccchhHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4578999999999999999998 6899999999999999999876655443333
No 50
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=98.77 E-value=3.5e-06 Score=87.05 Aligned_cols=51 Identities=14% Similarity=0.025 Sum_probs=42.8
Q ss_pred HHHHHHHHhhcccceeehhhhhhcCCCCccccchhhhhHHHHHHHHHHHHHHhh
Q 012458 234 AQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGG 287 (463)
Q Consensus 234 ~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~ 287 (463)
...+....|+|.+-.......+|+||| +|+++|++..+..+..++|....+
T Consensus 197 ~~~~~~~~faf~G~E~~a~~a~E~knP---~r~~PrAi~~~~i~~~~l~~l~~~ 247 (507)
T TIGR00910 197 LVVFVAFIGAYMGVEASASHINELENP---GRDYPLAMILLMIAAICLDAIGGF 247 (507)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHccCC---cccccHHHHHHHHHHHHHHHHHHH
Confidence 334445688999999999999999998 689999999999999998876443
No 51
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=98.76 E-value=1.3e-05 Score=80.08 Aligned_cols=364 Identities=12% Similarity=0.058 Sum_probs=225.1
Q ss_pred ccccchHHHHHHHHHhhccccchh-hHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHH
Q 012458 24 IKRTGTLWTAVAHIITGVIGSGVL-SLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAV 102 (463)
Q Consensus 24 ~~~~~s~~~a~~~l~~~~iG~GiL-~LP~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~ 102 (463)
-+|+.....-.|.-+...+|+|.+ +.-.+.+++|-...++.-++++.+.+..+.-+.|.....+ ..| +|...+
T Consensus 42 lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P-~sG-----sF~~ya 115 (541)
T COG0833 42 LKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYP-VSG-----SFSTYA 115 (541)
T ss_pred hhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCC-----chhhhh
Confidence 346667778889999999999975 6899999999998889999999999999999999776543 333 688889
Q ss_pred HHHcccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHh--hcCCCcc
Q 012458 103 DMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLIL--SQAPDFH 180 (463)
Q Consensus 103 ~~~~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl--~~~~~l~ 180 (463)
.+..++..+..+.....+...-.+...++..+..++.+.+. ..+...|..++.++++.+ .-.|-..
T Consensus 116 ~rfvdpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~------------~v~~~~w~~iF~~~i~~iN~~~Vk~fG 183 (541)
T COG0833 116 TRFVDPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPD------------TVPPWIWIAIFLVLIFLLNLFGVKGFG 183 (541)
T ss_pred hhhcCchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCC------------CCChHHHHHHHHHHHHHHHHhcccccc
Confidence 99999888888888888888888888888888888877532 123557777777766555 3445554
Q ss_pred chh-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc--ccCCCCch-hHHHHHHHHHHHHHHhhcccceeehhhhhh
Q 012458 181 NIQ-SLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSF--SGVSTTTS-IEKMWLVAQALGDIAFAYPYSLILIEIQDT 256 (463)
Q Consensus 181 ~l~-~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~faf~~~~~~~~i~~~ 256 (463)
+.- ++|.+=++.++.+.++.+ .+..+...+ ++.. ..+.++.+ .+.+.++...+-+..|+|.+.-.+--...|
T Consensus 184 E~Efw~s~iKV~~ii~Fii~gi--i~~~Gg~~~--~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgE 259 (541)
T COG0833 184 ETEFWFSSIKVLTIIGFIILGI--IIICGGGPT--HGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGE 259 (541)
T ss_pred eehHHHHHHHHHHHHHHHHHHH--HHhcCCCCC--CCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecc
Confidence 444 344444444332222221 111111111 1110 00111111 233667788888999999999999999999
Q ss_pred cCCCCccccchhhhhHHHHHHHHHHHHHHhhh-hhh-hccCc----------ccccccccccccCChHHHHHHHHHHHHH
Q 012458 257 LKSPPPANQTMKKASTMSIITTTIFYLFCGGF-GYA-AFGDN----------TPGNLLTGFGFYEPYWLIDLANAFIVIH 324 (463)
Q Consensus 257 m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~-gy~-~fg~~----------~~~~il~n~~~~~~~~~~~~~~~~~~i~ 324 (463)
-+|| +|..+|++.-.+.=..++|...-++ |.+ -|.|. ..++....+.+..-..+..+.|...+++
T Consensus 260 s~nP---~K~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~s 336 (541)
T COG0833 260 SENP---RKSIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTS 336 (541)
T ss_pred cCCc---hhhhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHH
Confidence 9998 6899999998888888888743332 222 23220 1123333333222345677888888888
Q ss_pred HHhhhhccccchHHHHHHHHHhhcCCCCccccccccCCCCCCCcCCchhhHHHHHHHHHHHHHHHhhCC--chHHHHHHh
Q 012458 325 LVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFP--YFNQVLGVI 402 (463)
Q Consensus 325 ~~~s~pl~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp--~~~~v~~l~ 402 (463)
++.+----++...+.+..+-+++... |.-.+-.....| ..-+++..+.-+++++-+..-. -+.-++++.
T Consensus 337 vlSa~NS~lYasSR~L~sLA~~g~AP-k~f~~~~r~GvP--------~~al~vt~~fg~lafl~~~~~~~~vf~wL~~is 407 (541)
T COG0833 337 VLSAANSGLYASSRMLYSLAKQGKAP-KIFAKVDRRGVP--------LVALLVTLLFGLLAFLNSSFKETTVFNWLLNIS 407 (541)
T ss_pred HHHHhhccchHHHHHHHHHHhcCCCc-hHHHhhCCCCCc--------hHHHHHHHHHHHHHHHHhccCcchHHHHHHHHH
Confidence 88777766776667776665443211 110000000112 2223334444444555555422 255666776
Q ss_pred hhhhhhhhHhhhhhHHHHHHh
Q 012458 403 GGVIFWPLTIYFPVEMYFKQM 423 (463)
Q Consensus 403 Ga~~~~~l~filP~l~~~~~~ 423 (463)
|.... ++.+.=++.|++-|
T Consensus 408 g~s~~--i~W~~I~~shirFR 426 (541)
T COG0833 408 GLSGF--IAWGSICLSHIRFR 426 (541)
T ss_pred HHHHH--HHHHHHHHHHHHHH
Confidence 65553 44444466666543
No 52
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=98.56 E-value=5.4e-07 Score=92.72 Aligned_cols=284 Identities=17% Similarity=0.163 Sum_probs=161.3
Q ss_pred Hhhccccchhh-HHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHHHcccccchhhHH
Q 012458 38 ITGVIGSGVLS-LAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWACSF 116 (463)
Q Consensus 38 ~~~~iG~GiL~-LP~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~g~~~~~~ 116 (463)
+..++|+|+.. .+.+..+.|....++..++.+++...+..-+.|..++.+ +.| .+.+.+++.+|+.....+..
T Consensus 7 ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p-~~G-----g~y~y~~~~lg~~~Gf~~gw 80 (478)
T PF00324_consen 7 IGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFP-SAG-----GFYAYASRGLGPALGFAAGW 80 (478)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhc-ccc-----chhhhhhhccCCcCCceeeH
Confidence 45677887665 577888999877778888888888888888888776643 333 66677889999998888877
Q ss_pred HHHHHHHhHHHHHHHHHHhhHHHH--HhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCCccchhhHHHHHHHHHH
Q 012458 117 FVHVGLYGTAIAYTVTSAISMRAI--QKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSF 194 (463)
Q Consensus 117 ~~~~~~~g~~~~y~i~~~~~l~~i--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~ 194 (463)
...+.............+..++.+ .... + ..+ .+.. .+..++.+++..+.. ...|........-....+
T Consensus 81 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~-~~~~-~~~~i~~~~~~~l~~-~gv~~~~~~~~~~~~i~~ 151 (478)
T PF00324_consen 81 AYWLSYIAAIAAEATAAGSFLQFWGYFPGL---P---STW-VWGI-LIAIIFILLITLLNL-FGVRVSGKIEFILTIIKL 151 (478)
T ss_pred HHHHHHHHHHHhhhhhhhhhhccccccccc---c---ccc-cccc-hhhhhhhhhhhhhhh-hhhhccchHHHHHHHHhh
Confidence 766666666666655555555443 1110 0 000 0100 122233333222222 223333332222222211
Q ss_pred HHHHHHHHHH-HHHHhcCCcccc-----ccc---cCCCC---chhHHHHHHHHHHHHHHhhcccceeehhhhhhcCCCCc
Q 012458 195 AYSFIGFGLG-VAKVIGNGFVMG-----SFS---GVSTT---TSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPP 262 (463)
Q Consensus 195 ~~~~i~~~~~-~~~~~~~~~~~~-----~~~---~~~~~---~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~ 262 (463)
...+..++.. +......++.+. +.. .+++- .+...+.+++.++....++|.+-......-+|.|||
T Consensus 152 ~~li~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P-- 229 (478)
T PF00324_consen 152 IALIAFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNP-- 229 (478)
T ss_pred hHhhhhhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCc--
Confidence 1111111111 111111111111 000 11110 112235678899999999999999999999999998
Q ss_pred cccchhhhhHHHHHHHHHHHHHHhhhhhhhccCcccccc---------cccccccCChHHHHHHHHHHHHHHHhhhhccc
Q 012458 263 ANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNL---------LTGFGFYEPYWLIDLANAFIVIHLVGGYQVYS 333 (463)
Q Consensus 263 ~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~i---------l~n~~~~~~~~~~~~~~~~~~i~~~~s~pl~~ 333 (463)
+|+++|+...+.....++|.......-...+.+..... ..-.......+...+.++....+...+.--..
T Consensus 230 -~k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~i~~~~~l~s~~s~~~~~~ 308 (478)
T PF00324_consen 230 -RKTIPRATLLSVLRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFVIAAQYSGGPWLAWIVNAGILISAFSSANASL 308 (478)
T ss_pred -hhhhhhHhhhhhhhhhhhhhhhhhhcccccCccchhhccccccccchhhhhhhcccccccceecccchhhhhhhhhhhh
Confidence 68999999999999999999887766555554432111 11111112355566666666666666555444
Q ss_pred cchHHH
Q 012458 334 QPIFAH 339 (463)
Q Consensus 334 ~p~~~~ 339 (463)
+...+.
T Consensus 309 ~~~sR~ 314 (478)
T PF00324_consen 309 YAASRL 314 (478)
T ss_pred ccccee
Confidence 443333
No 53
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.47 E-value=0.00026 Score=72.03 Aligned_cols=191 Identities=14% Similarity=0.005 Sum_probs=112.5
Q ss_pred ccHHHHHHHHcccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCccccc--ccchhHHHHHHHHHHh
Q 012458 96 RSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEY--SDTYYMLIFGAVQLIL 173 (463)
Q Consensus 96 ~~y~~l~~~~~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~pl 173 (463)
.++..+.|..||++|..+..++..+...|=........++.+..++.....+ .... +... ......+++.++.+++
T Consensus 76 l~~~v~sR~~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~-~~~~-~~~~t~~~~~~~~i~~~l~~~~ 153 (442)
T TIGR00800 76 LPFPVLSRASFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPG-YLHL-GNGMTTLELICFIIFWALVLVF 153 (442)
T ss_pred CCcchhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccc-cccc-CCcccHHHHHHHHHHHHHHHHH
Confidence 4888899999999999999999999999999999999999988887653211 0000 0000 1223334555666666
Q ss_pred hcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ccccccccCCCCchhHHHHHHHHHHHHH-Hhhcccceeeh
Q 012458 174 SQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNG-FVMGSFSGVSTTTSIEKMWLVAQALGDI-AFAYPYSLILI 251 (463)
Q Consensus 174 ~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~faf~~~~~~~ 251 (463)
....-.+..+.....+....+.... ..++...+.+ ..+. ....+..++....+.+..++... .+.-..-.+.+
T Consensus 154 ~~~~g~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~ 228 (442)
T TIGR00800 154 LFFFGYKIRHLFEWLAVVPPFAAFG----MLIWALSKAHGKGPL-GELTGTLHGSTGAWAFLYALSLVIGSFATWATNAP 228 (442)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHcCCCCcc-ccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCch
Confidence 6565555555555555544332111 1122222211 1110 00001012223344555544442 23334667899
Q ss_pred hhhhhcCCCCccccchhhhhHHHHHHHHHHHHHHhhhhhhh----ccCcc
Q 012458 252 EIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAA----FGDNT 297 (463)
Q Consensus 252 ~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~----fg~~~ 297 (463)
...|.+|++ ++-.+....++....+....+|+.+-.. +|+..
T Consensus 229 DysRy~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~ 274 (442)
T TIGR00800 229 DFTRFGKSK----KTAIWGQFLALPGGFTLTCFFGILGAAAAYAAYGEPY 274 (442)
T ss_pred hhhhhcCCc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 999999986 5555567777888888888888877765 76553
No 54
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.43 E-value=0.0002 Score=67.26 Aligned_cols=135 Identities=16% Similarity=0.123 Sum_probs=99.9
Q ss_pred HHHHHHHHhhccccchhh---HHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHHHcc
Q 012458 31 WTAVAHIITGVIGSGVLS---LAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLG 107 (463)
Q Consensus 31 ~~a~~~l~~~~iG~GiL~---LP~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~~~~~G 107 (463)
..-.+-.+.+++|+|.-+ +=.-|..-|+. |....++++.+-..++..+.+..++. +..+|+|.-+..+|
T Consensus 6 ~~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~-s~~gIivs~vlf~~~g~vim~ig~~f-------~a~~y~~~~~~v~~ 77 (349)
T COG3949 6 MRWAFAFIGTVVGAGFASGQEIMQFFGKYGVY-SILGIILSTVLFTLSGAVIMTIGKKF-------NATSYREILKYVSG 77 (349)
T ss_pred HHHHHHHHHHhhcccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHh-------cccchHHHHHHHhh
Confidence 344566677999999765 34446677776 77778888888888888888876654 55699999999999
Q ss_pred cccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCCccchhhHHH
Q 012458 108 KTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSV 187 (463)
Q Consensus 108 ~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~ 187 (463)
|+...+.|+.+.++.++.++.-+.-.++.+.+.+. .+.+.-.++..+.+..+.++++.+.+-.+..
T Consensus 78 ~~~~ki~d~~iif~lf~~~vVM~AGags~~~e~~~--------------lP~wiGali~i~~v~i~lfl~~vegi~tvn~ 143 (349)
T COG3949 78 PKFAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFG--------------LPYWIGALIIILLVLILLFLGRVEGIITVNG 143 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhC--------------ccHHHHHHHHHHHHHHHHHHhcccceeeehe
Confidence 99999999999999999999999888887777532 2333333555566666667776666555443
No 55
>PRK11375 allantoin permease; Provisional
Probab=98.42 E-value=0.0016 Score=66.90 Aligned_cols=241 Identities=9% Similarity=-0.012 Sum_probs=123.4
Q ss_pred cccHHHHHHHHcccccchhhHHHHH-HHHHhHHHHHHHHHHhhHHHHHhhcccccC--CCC-cccccccchh--HHHHHH
Q 012458 95 NRSYLEAVDMCLGKTNAWACSFFVH-VGLYGTAIAYTVTSAISMRAIQKSNCYHRE--GHE-AACEYSDTYY--MLIFGA 168 (463)
Q Consensus 95 ~~~y~~l~~~~~G~~g~~~~~~~~~-~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~--~~~-~~~~~~~~~~--~~i~~~ 168 (463)
..++.-+.|..||++|..+..+... +..+|=-.......++.+..++......-. +.. .....+...+ .+++.+
T Consensus 88 Gl~~~v~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~ 167 (484)
T PRK11375 88 GVPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWL 167 (484)
T ss_pred CCChhHhHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHH
Confidence 4599999999999999888888874 466666666777777877766644321100 000 0011221122 234445
Q ss_pred HHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCchhHHHHHHHHHHHHHHhhcc-cc
Q 012458 169 VQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYP-YS 247 (463)
Q Consensus 169 ~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~-~~ 247 (463)
+..++.. ...+.+++++.++........+...+..+.+...+...+....+ ..+.....+.+..++...+=++. .-
T Consensus 168 l~~~~~~-~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~i~~vig~~~~~~ 244 (484)
T PRK11375 168 VNVGIGF-GGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSG--IQKAENSGFLFLVVINAVVAVWAAPA 244 (484)
T ss_pred HHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCccc--ccCCcchHHHHHHHHHHHHHHHHHHH
Confidence 5566654 44667777777666665443333333333322100000000000 01111223444444433222333 44
Q ss_pred eeehhhhhhcCCCCccccchhhhhHHHHHHHHHHHHHHhhhh----hhhccCcccc--cccccccccCChHHHHHHHHHH
Q 012458 248 LILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFG----YAAFGDNTPG--NLLTGFGFYEPYWLIDLANAFI 321 (463)
Q Consensus 248 ~~~~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~g----y~~fg~~~~~--~il~n~~~~~~~~~~~~~~~~~ 321 (463)
.+.|...|..|++ ++-.+....++.+...+...+|++. ...+|+...+ +++.++. +.....++-+.+
T Consensus 245 ~~~~D~tRy~k~~----~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~~i~~~~~---~~~~~~~a~l~~ 317 (484)
T PRK11375 245 VSASDFTQNAHSF----RAQALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVLDIVQRWD---SLFASFFAVLVI 317 (484)
T ss_pred ccccchhcccCCh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHhc---chHHHHHHHHHH
Confidence 5889999999876 5555566666666666554445443 3466654322 3333332 334444444555
Q ss_pred HHHHHhh-hhccccchHHHHHHHHH
Q 012458 322 VIHLVGG-YQVYSQPIFAHFEKWIC 345 (463)
Q Consensus 322 ~i~~~~s-~pl~~~p~~~~~~~~~~ 345 (463)
+++...+ .....++.-..+.+++.
T Consensus 318 v~a~~~tN~~~N~ys~~~~l~~l~p 342 (484)
T PRK11375 318 LMTTISTNATGNIIPAGYQIAALAP 342 (484)
T ss_pred HHHHHHHHHHhhcccHHHHHHHhCc
Confidence 5555544 34566666666666653
No 56
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.39 E-value=8.4e-06 Score=83.87 Aligned_cols=309 Identities=12% Similarity=0.013 Sum_probs=184.2
Q ss_pred CccccchHHHHHHHHHhhccccchhhH-HHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHH
Q 012458 23 FIKRTGTLWTAVAHIITGVIGSGVLSL-AWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEA 101 (463)
Q Consensus 23 ~~~~~~s~~~a~~~l~~~~iG~GiL~L-P~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l 101 (463)
+-+|+.+.+.-.+.-+.+++|+|+.-. ..+.++.|-..-++..++.+...+.+..-+.|...+.+...| ++...
T Consensus 27 ~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aG-----s~~~y 101 (554)
T KOG1286|consen 27 ELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAG-----SFYTY 101 (554)
T ss_pred hhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccc-----cceee
Confidence 346667777778888899999998764 778888888777777888888888888888887655422112 34444
Q ss_pred HHHHcccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHH--HHHHHHHhhcCCCc
Q 012458 102 VDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLI--FGAVQLILSQAPDF 179 (463)
Q Consensus 102 ~~~~~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i--~~~~~~pl~~~~~l 179 (463)
+++..|+-...++..-..+.....+.+.....+..++.+.. ....+. .....+...|..+ ..++++.+.-.+-.
T Consensus 102 a~~~i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~---~~~~~~-~~~~~~~~~~~~~fla~~v~in~~gv~~~ 177 (554)
T KOG1286|consen 102 AYRFVGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTG---ASLIGI-LVDTVNPGGWIPDFLAFILIINLFGVLAY 177 (554)
T ss_pred eeeeeCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc---cccccc-cccCCCCCccHHHHHHHHHHHHHHHHhhc
Confidence 57778888888888888888888888889999998888761 000000 0001111222222 12222233333332
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccC---CCCch-h-HHHHHHHHHHHHHHhhcccceeehhhh
Q 012458 180 HNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGV---STTTS-I-EKMWLVAQALGDIAFAYPYSLILIEIQ 254 (463)
Q Consensus 180 ~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~-~~~~~~~~~~~~~~faf~~~~~~~~i~ 254 (463)
-..++.....-+.+..-.++..++...-...++..+ +.+. .++.. . ..+.+++..+.++.|+|.+-..+-..-
T Consensus 178 ge~ef~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~--~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a 255 (554)
T KOG1286|consen 178 GEVEFSLAFNKILTAVGFIILAIVIIAGGGPADVKN--WIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTA 255 (554)
T ss_pred cceeehHHHHHHHHHHHHHHhheeeecCCCcCCcCC--CcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHH
Confidence 333333332222222111111111111111111101 1111 11111 1 125678899999999999999999999
Q ss_pred hhcCCCCccccchhhhhHHHHHHHHHHHHHHhhhhhh--hccCc-ccccccccccc---cCChHHH---HHHHHHHHHHH
Q 012458 255 DTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYA--AFGDN-TPGNLLTGFGF---YEPYWLI---DLANAFIVIHL 325 (463)
Q Consensus 255 ~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~--~fg~~-~~~~il~n~~~---~~~~~~~---~~~~~~~~i~~ 325 (463)
.|-||| +|..++++..++..+.++|....+.-=+ -|.+. ..++....-+. .+..+.. .+.++..++.+
T Consensus 256 ~E~kNP---~k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~ 332 (554)
T KOG1286|consen 256 EEAKNP---RKAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGL 332 (554)
T ss_pred HhccCC---cccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHH
Confidence 999998 6999999999999999999987765332 22221 11111110000 0122233 48888888888
Q ss_pred HhhhhccccchHHHHHHHHH
Q 012458 326 VGGYQVYSQPIFAHFEKWIC 345 (463)
Q Consensus 326 ~~s~pl~~~p~~~~~~~~~~ 345 (463)
+.+--.-+++.-+.+..+-.
T Consensus 333 ~s~~n~~~y~~sR~l~amA~ 352 (554)
T KOG1286|consen 333 LSSLNSSLYAGSRVLYALAK 352 (554)
T ss_pred HHHHHHHhHHhHHHHHHHHh
Confidence 88888888888777776643
No 57
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.36 E-value=0.002 Score=66.46 Aligned_cols=150 Identities=12% Similarity=0.059 Sum_probs=94.0
Q ss_pred cccchHHHHHHHHHhhcccc-chhhHHHHHHHhChhHHHHHHHH---HHH-HHHHHHHHHHHcccCCCCCCCCCccccHH
Q 012458 25 KRTGTLWTAVAHIITGVIGS-GVLSLAWSMAQLGWIAGPLAMVI---FAS-VTLFATFLLCDCHRGPDPEYGPGRNRSYL 99 (463)
Q Consensus 25 ~~~~s~~~a~~~l~~~~iG~-GiL~LP~~f~~~G~~~gii~li~---~~~-~s~~t~~ll~~~~~~~~~~~~~~~~~~y~ 99 (463)
.|+.+++...+.+..+.+|+ ..++.|....+-|+.. ...... ... ...+-+..+.+-.++. +..|.+
T Consensus 40 gr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-------~~~T~~ 111 (483)
T PRK09442 40 NRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGW-VLLAMIQVPTVWLSLGILGKKFAILARKY-------NAVTLN 111 (483)
T ss_pred CCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------CCccHH
Confidence 56667777788887776665 6777887777778641 111111 111 1111122222222322 567999
Q ss_pred HHHHHHcccc-cchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCC
Q 012458 100 EAVDMCLGKT-NAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPD 178 (463)
Q Consensus 100 ~l~~~~~G~~-g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~ 178 (463)
|.-++-||++ .+.+..+...+..+......+...+..++.++. ++....+++.+++++....+.-
T Consensus 112 e~l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g--------------i~~~~~iii~~~iv~iYt~~GG 177 (483)
T PRK09442 112 DMLRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG--------------ISYETGLLIFGITVALYTAFGG 177 (483)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHHhcc
Confidence 9999999965 456666666666666677777777887777642 2344455666666777788888
Q ss_pred ccchhhHHHHHHHHHHHH
Q 012458 179 FHNIQSLSVIAAVMSFAY 196 (463)
Q Consensus 179 l~~l~~~s~~~~~~~~~~ 196 (463)
++...+...+-.+..+..
T Consensus 178 l~av~~TD~iQ~~i~~~~ 195 (483)
T PRK09442 178 FRAVVLTDALQGIVMLVG 195 (483)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888776665543
No 58
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.31 E-value=0.0025 Score=65.50 Aligned_cols=150 Identities=14% Similarity=0.105 Sum_probs=97.7
Q ss_pred cccchHHHHHHHHHhhcccc-chhhHHHHHHHhChhHHHHHHHHHHHHHHHHHH----HHHHcccCCCCCCCCCccccHH
Q 012458 25 KRTGTLWTAVAHIITGVIGS-GVLSLAWSMAQLGWIAGPLAMVIFASVTLFATF----LLCDCHRGPDPEYGPGRNRSYL 99 (463)
Q Consensus 25 ~~~~s~~~a~~~l~~~~iG~-GiL~LP~~f~~~G~~~gii~li~~~~~s~~t~~----ll~~~~~~~~~~~~~~~~~~y~ 99 (463)
.|+.+++...+.+..+.+|+ ..++.|-...+-|+....+.. ......+.+.. .+.+..++. +..|.+
T Consensus 39 gr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-------~~~T~~ 110 (471)
T TIGR02119 39 GRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAM-IQVPTGYFVLGVLGKKFAIISRKY-------NAITIN 110 (471)
T ss_pred CCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHc-------CCccHH
Confidence 56778888888888888877 556788888888863211110 00011111111 122222222 567999
Q ss_pred HHHHHHccccc-chhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCC
Q 012458 100 EAVDMCLGKTN-AWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPD 178 (463)
Q Consensus 100 ~l~~~~~G~~g-~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~ 178 (463)
|.-++-||++. +++..+...+.+++...+.+...+..++.++. ++....+++.++++.......-
T Consensus 111 e~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g--------------i~~~~~iii~~~iv~iYt~~GG 176 (471)
T TIGR02119 111 DVLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG--------------LSYLTALFIFSSSVLIYTTFGG 176 (471)
T ss_pred HHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHHHHhhh
Confidence 99999999654 67788888888888878888888888877642 2344445566666777778888
Q ss_pred ccchhhHHHHHHHHHHHH
Q 012458 179 FHNIQSLSVIAAVMSFAY 196 (463)
Q Consensus 179 l~~l~~~s~~~~~~~~~~ 196 (463)
++...+...+-.+..+..
T Consensus 177 ~~av~~td~iQ~~v~~~~ 194 (471)
T TIGR02119 177 FRAVALTDAIQGIVMFTG 194 (471)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888776665543
No 59
>PRK12488 acetate permease; Provisional
Probab=98.29 E-value=0.007 Score=63.31 Aligned_cols=150 Identities=16% Similarity=0.108 Sum_probs=98.5
Q ss_pred cccchHHHHHHHHHhhcccc-chhhHHHHHHHhChhHHHHHHHHHHHHHHHH-HHHHHHcccCCCCCCCCCccccHHHHH
Q 012458 25 KRTGTLWTAVAHIITGVIGS-GVLSLAWSMAQLGWIAGPLAMVIFASVTLFA-TFLLCDCHRGPDPEYGPGRNRSYLEAV 102 (463)
Q Consensus 25 ~~~~s~~~a~~~l~~~~iG~-GiL~LP~~f~~~G~~~gii~li~~~~~s~~t-~~ll~~~~~~~~~~~~~~~~~~y~~l~ 102 (463)
.|+.+++...+.+..+.+|+ ..++.|......|+- +.... +...+.+.- ..++.+-.++. +..|.+|.-
T Consensus 66 GR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~-~~~~~-~g~~~g~~~~~~~~a~~lr~~-------g~~T~~d~l 136 (549)
T PRK12488 66 GGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYD-GLLYA-LGVLAGWPIILFLIAERLRNL-------GKYTFADVV 136 (549)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChh-HHHHH-HHHHHHHHHHHHHHHHHHHHC-------CCcchHHHH
Confidence 56677888888888777766 468899888888874 22222 111222211 22233322322 457999998
Q ss_pred HHHcc-cccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCCccc
Q 012458 103 DMCLG-KTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHN 181 (463)
Q Consensus 103 ~~~~G-~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~ 181 (463)
++=|| |+.+.+..+...+.........+...+..++.++. +++..-+++.+++++.-....-++.
T Consensus 137 ~~Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g--------------i~~~~~iii~~~i~~~Yt~~GGm~a 202 (549)
T PRK12488 137 SYRLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG--------------ISYLYAVVIVGALMVLYVTFGGMLA 202 (549)
T ss_pred HHHcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHhccchhH
Confidence 88888 56888888888877777777888888877777642 2343445566666677778888888
Q ss_pred hhhHHHHHHHHHHHHH
Q 012458 182 IQSLSVIAAVMSFAYS 197 (463)
Q Consensus 182 l~~~s~~~~~~~~~~~ 197 (463)
..+...+-.+..+...
T Consensus 203 v~~td~iQ~~im~~~~ 218 (549)
T PRK12488 203 TTWVQIIKAVLLLSGT 218 (549)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888887766655433
No 60
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.20 E-value=0.00017 Score=72.55 Aligned_cols=154 Identities=12% Similarity=0.111 Sum_probs=93.3
Q ss_pred cccchHHHHHHHHHhhcccc-chhhHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHH
Q 012458 25 KRTGTLWTAVAHIITGVIGS-GVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVD 103 (463)
Q Consensus 25 ~~~~s~~~a~~~l~~~~iG~-GiL~LP~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~~ 103 (463)
.|+.+++...+.+..+.+|+ .+++.|....+.|+. +....+...........++.+-.++. +..|.+|.-+
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~r~~-------~~~T~~e~~~ 76 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGIS-GLWYAIGYAIGFLLFALFFAPRLRRS-------GAVTIPEYLE 76 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GG-GGHHHHHHHHHHHHHHHHTHHHHHHT-------T--SHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcc-eeeeccccchhHHHHHHHHHHhhccc-------chhhhhhhhh
Confidence 45667888888888877776 678889999999985 34444333443344444445444432 5679999999
Q ss_pred HHccccc--chhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCCccc
Q 012458 104 MCLGKTN--AWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHN 181 (463)
Q Consensus 104 ~~~G~~g--~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~ 181 (463)
+-||++. +.+..+...+.........+...+..++.++. ++....+++..++++......-+++
T Consensus 77 ~Ryg~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g--------------i~~~~~~~i~~~i~~iYt~~GGl~a 142 (406)
T PF00474_consen 77 KRYGSKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG--------------IPYNTAILIVGVIVIIYTFFGGLRA 142 (406)
T ss_dssp HHT-HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT----------------HHHHHHHHHHHHHHTTCTT----
T ss_pred hhcCCchhhhhhcccccchhhhhhhhccccccccchhhccc--------------hhhhHHHHHHHHHHHHhhhhhhHhh
Confidence 9999988 66666666666777777777777777776542 3344555666666677788888888
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 012458 182 IQSLSVIAAVMSFAYSFIG 200 (463)
Q Consensus 182 l~~~s~~~~~~~~~~~~i~ 200 (463)
..+...+-.+..+....++
T Consensus 143 v~~td~iQ~~i~~~~~~~~ 161 (406)
T PF00474_consen 143 VAWTDFIQGVIMIIGAIVV 161 (406)
T ss_dssp --SHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHh
Confidence 8888877776655443333
No 61
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.14 E-value=0.0018 Score=65.30 Aligned_cols=148 Identities=13% Similarity=0.131 Sum_probs=98.1
Q ss_pred ccchHHHHHHHHHhhcccc-chhhHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHH
Q 012458 26 RTGTLWTAVAHIITGVIGS-GVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDM 104 (463)
Q Consensus 26 ~~~s~~~a~~~l~~~~iG~-GiL~LP~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~~~ 104 (463)
|+.+++...+.+..+.+|+ ..++.|....+-|+. +....+...........+..+..++. +..|.+|.-++
T Consensus 3 r~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~T~~e~l~~ 74 (407)
T TIGR00813 3 RSLGGWVVAASLFASYISASQFLGLPGAIYAYGFA-IGFYELGALVLLIILGWLFVPIFINN-------GAYTMPEYLEK 74 (407)
T ss_pred CCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHc-------CCCchhHHHHH
Confidence 4566677777776666665 677788888888864 33222222222333444444443322 56799999999
Q ss_pred Hccc-ccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCCccchh
Q 012458 105 CLGK-TNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQ 183 (463)
Q Consensus 105 ~~G~-~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~ 183 (463)
-||+ ..+.+..+...+..+......+...+..++.++. ++....+++.+++++......-++...
T Consensus 75 Ryg~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g--------------i~~~~~~ii~~~i~~~Yt~~GG~~av~ 140 (407)
T TIGR00813 75 RFGKRILRGLSVLSLILYIFLYMSVDLFSGALLIELITG--------------LDLYLSLLLLGAITILYTVFGGLKAVV 140 (407)
T ss_pred HhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------chHHHHHHHHHHHHHHHHHHcchHHHH
Confidence 9998 4677777777888888888888888888877642 223344555556666667778888888
Q ss_pred hHHHHHHHHHHH
Q 012458 184 SLSVIAAVMSFA 195 (463)
Q Consensus 184 ~~s~~~~~~~~~ 195 (463)
+...+-.+..+.
T Consensus 141 ~Td~iQ~~i~~~ 152 (407)
T TIGR00813 141 WTDTIQAVIMIL 152 (407)
T ss_pred HHHHHHHHHHHH
Confidence 888777666543
No 62
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.14 E-value=0.0072 Score=60.27 Aligned_cols=177 Identities=11% Similarity=0.092 Sum_probs=107.3
Q ss_pred cccHHHHHHHHcccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhh
Q 012458 95 NRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILS 174 (463)
Q Consensus 95 ~~~y~~l~~~~~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~ 174 (463)
..++.-+.|..||++|..+..+...+...|=-.......++.+..+.+... +. .+...+.++.+++..+.+
T Consensus 57 Gl~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~-~~--------~~~~~~~~i~~~l~~~~~ 127 (386)
T TIGR02358 57 GLSAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLF-GE--------ESPMLWILIVGILVTLWL 127 (386)
T ss_pred CcCHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC--------CchHHHHHHHHHHHHHHH
Confidence 458999999999999999999999999999888888899999998875421 10 112234445555455555
Q ss_pred cCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCchhHHHHHHHHHHHHHH-hhcccceeehhh
Q 012458 175 QAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIA-FAYPYSLILIEI 253 (463)
Q Consensus 175 ~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-faf~~~~~~~~i 253 (463)
.. ..+.++++..++........+........ +.+ ..... ..+ .+ ..+..++.... +.-......+..
T Consensus 128 ~~-G~~~i~~~~~~~~~~~~i~~~~~~~~~~~---~~~-~~~~~-~~~--~~----~s~~~~~~~~~~~~~swa~~~~Dy 195 (386)
T TIGR02358 128 LS-GPLAFVWLNNWSVWLLLIATLWLLVVVFS---KAD-LSELW-NRA--GD----MSFAVAVELVIAMPLSWLPLIADY 195 (386)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccc-hhhhc-CCC--CC----ccHHHHHHHHHHHHHHHHHHccch
Confidence 43 35667777777766654333222211211 111 11111 111 11 11111221111 101223447888
Q ss_pred hhhcCCCCccccchhhhhHHHHHHHHHHHHHHhhhhhhhccCc
Q 012458 254 QDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDN 296 (463)
Q Consensus 254 ~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~ 296 (463)
.|..|+| ++..+....+..+...+...+|.....+.++.
T Consensus 196 sRy~k~~----~~~~~~~~~G~~i~~~~~~~~G~~~~~a~~~~ 234 (386)
T TIGR02358 196 TRFARNP----RHVFLGTVLGYFIGSCWMYFLGLAVTLATGQT 234 (386)
T ss_pred hhhcCCC----cceehHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 8988875 77778888888888888889998877776653
No 63
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.06 E-value=0.0023 Score=64.39 Aligned_cols=251 Identities=11% Similarity=0.021 Sum_probs=128.5
Q ss_pred HHHHHHHHHhhccccchhhHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHHHcccc
Q 012458 30 LWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKT 109 (463)
Q Consensus 30 ~~~a~~~l~~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~ 109 (463)
.+...+.+++..-|.- -++.+....+|-..-....++.+..++....-|.|.....+ ..|. -|--.+..+ +|+
T Consensus 55 ~fg~sFs~~g~~~~i~-tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~P-tsGg----Ly~waa~la-p~k 127 (550)
T KOG1289|consen 55 IFGISFSLMGLLPGIA-TSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAMP-TSGG----LYFWAAVLA-PPK 127 (550)
T ss_pred HHHHHHHHhcchhhhh-hheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhCC-CCCc----HHHHHHHhc-Ccc
Confidence 4444455555443331 23555555566554455566666677777777777554432 2232 232222222 555
Q ss_pred cchhhHHHHHHHHHhHHHHHHH----HHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCC--ccchh
Q 012458 110 NAWACSFFVHVGLYGTAIAYTV----TSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPD--FHNIQ 183 (463)
Q Consensus 110 g~~~~~~~~~~~~~g~~~~y~i----~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~--l~~l~ 183 (463)
.+.++.....-.++...+.-.- -.++.+...... .+++ ...++.....++.++++..+++.. -|.++
T Consensus 128 ~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l--~np~-----y~~~~~~~~~v~~ai~~v~~lln~~p~r~l~ 200 (550)
T KOG1289|consen 128 YGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSL--TNPN-----YEPTNYHQFGVFEAILFVHGLLNSLPTRVLA 200 (550)
T ss_pred hhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhh--cCCC-----CcccceEeehHHHHHHHHHHHHhcCCcHHHH
Confidence 5544443333222222111111 112222222221 1111 112333444444444444433322 36677
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-cc--cccCCCCchhH-HHHHHHHHHHHHHhhcccceeehhhhhhcCC
Q 012458 184 SLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVM-GS--FSGVSTTTSIE-KMWLVAQALGDIAFAYPYSLILIEIQDTLKS 259 (463)
Q Consensus 184 ~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~-~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~ 259 (463)
+++-+++...+...++..+......-++.+.+ ++ ..++.+.+.++ ..|.+..++-.-...+.+-.....+.+|-+|
T Consensus 201 ~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~afil~f~~~~wt~sGyDa~~H~aEE~~n 280 (550)
T KOG1289|consen 201 RINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWAFILGFFNPAWTMSGYDAAAHMAEETKN 280 (550)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHHHHHhhccceeEEeccCchHHHHHHhcc
Confidence 77777777666544444433332211111011 11 11222333333 5667777777778888899999999999999
Q ss_pred CCccccchhhhhHHHHHHHHHHHHHHhhhhhhhccCcc
Q 012458 260 PPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT 297 (463)
Q Consensus 260 p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~~ 297 (463)
+ +++.+|.+..+..++.++=.++-+.-...-+++.
T Consensus 281 A---sk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~ 315 (550)
T KOG1289|consen 281 A---SKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDL 315 (550)
T ss_pred h---hhhccHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 7 5889999999998888887766666666666433
No 64
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=97.96 E-value=0.036 Score=58.03 Aligned_cols=148 Identities=12% Similarity=0.053 Sum_probs=91.6
Q ss_pred cccchHHHHHHHHHhhccc-cchhhHHHHHHHhChhHHHHHHHHHHHHHH-HHHHHHHHcccCCCCCCCCCccccHHHHH
Q 012458 25 KRTGTLWTAVAHIITGVIG-SGVLSLAWSMAQLGWIAGPLAMVIFASVTL-FATFLLCDCHRGPDPEYGPGRNRSYLEAV 102 (463)
Q Consensus 25 ~~~~s~~~a~~~l~~~~iG-~GiL~LP~~f~~~G~~~gii~li~~~~~s~-~t~~ll~~~~~~~~~~~~~~~~~~y~~l~ 102 (463)
.|+.+++...+.+..+.++ ...++.|-...+.|+- +....+ ...+.+ ....++.+-.|+. +..|.+|.-
T Consensus 66 Gr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~-~~~~~~-g~~~~~~i~~~~~a~~lrr~-------g~~T~~d~l 136 (549)
T TIGR02711 66 GGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYD-GLIYSL-GFLVGWPIILFLIAERLRNL-------GRYTFADVA 136 (549)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHHH-HHHHHHHHHHHHHHHHHHHc-------CCccHHHHH
Confidence 4566667766677666555 4788999888888874 332221 112222 2223334433322 457999998
Q ss_pred HHHcc-cccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCCccc
Q 012458 103 DMCLG-KTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHN 181 (463)
Q Consensus 103 ~~~~G-~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~ 181 (463)
++=|| |..+.+..+...+.+.......+...+..++.++. ++...-+++.++++..-....-++.
T Consensus 137 ~~Rf~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~g--------------i~~~~~iii~~~i~~~Yt~~GGm~a 202 (549)
T TIGR02711 137 SYRLKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFG--------------LNYHVAVVLVGILMVMYVLFGGMLA 202 (549)
T ss_pred HHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHHHHhhhhHH
Confidence 88887 45677777666666666666777777777766542 2233445566666666677777788
Q ss_pred hhhHHHHHHHHHHH
Q 012458 182 IQSLSVIAAVMSFA 195 (463)
Q Consensus 182 l~~~s~~~~~~~~~ 195 (463)
..+...+-.+..+.
T Consensus 203 v~~td~iQ~~im~~ 216 (549)
T TIGR02711 203 TTWVQIIKAVLLLF 216 (549)
T ss_pred HHHHHHHHHHHHHH
Confidence 78887777665543
No 65
>PRK11017 codB cytosine permease; Provisional
Probab=97.93 E-value=0.016 Score=58.23 Aligned_cols=174 Identities=12% Similarity=0.072 Sum_probs=93.2
Q ss_pred cccHHHHHHHHcccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhh
Q 012458 95 NRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILS 174 (463)
Q Consensus 95 ~~~y~~l~~~~~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~ 174 (463)
..++..+.|..||.+|..+..+...+...|=........++.+..+.. .+...+.+++.++..+.+
T Consensus 70 G~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~--------------~~~~~~~~i~~~l~~~~~ 135 (404)
T PRK11017 70 GLSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATG--------------LDINLLIVLSGLLMTVTA 135 (404)
T ss_pred CcCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHH
Confidence 459999999999999999988888877776666665566665554321 112234556666666665
Q ss_pred cCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCchhHHHHHHHHHHHHH-Hhhcccceeehhh
Q 012458 175 QAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDI-AFAYPYSLILIEI 253 (463)
Q Consensus 175 ~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~faf~~~~~~~~i 253 (463)
..+ .+.+++++..+........+.. .+....+....+.....++.++ ..+..++... ..--..-.+.+..
T Consensus 136 ~~G-~~~i~~~~~~~~p~~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~----~~~~~a~~~~~g~~~~~~~~~~Dy 206 (404)
T PRK11017 136 YFG-ISALTILSRIAVPAIALLGGYS----VWLAVNDVGGLDGLKAIVPAEP----LDFSAALTLVVGSFISGGTLTADF 206 (404)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHH----HHHHHhccCchhhhhcCCCCCc----ccHHHHHHHHHHHHHHhHhcCCCh
Confidence 543 3555555555544433222211 1112211100011111111111 1233232221 1222345678899
Q ss_pred hhhcCCCCccccchhhhhHHHHHHHHHHHHHHhhhhhhhccC
Q 012458 254 QDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGD 295 (463)
Q Consensus 254 ~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~ 295 (463)
.|..|++ ++.......+..+...+...+|...-...|+
T Consensus 207 sRy~k~~----~~~~~~~~lg~~i~~~~~~~~G~~~a~~~~~ 244 (404)
T PRK11017 207 VRFGRSA----KIAVLATMVAFFLGNSLMFIFGAAGAAVYGQ 244 (404)
T ss_pred HhhccCc----cceeehhHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9988865 4444555666666666677777766666654
No 66
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=97.93 E-value=0.0075 Score=60.11 Aligned_cols=175 Identities=16% Similarity=0.100 Sum_probs=103.9
Q ss_pred cHHHHHHHHcccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcC
Q 012458 97 SYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQA 176 (463)
Q Consensus 97 ~y~~l~~~~~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~ 176 (463)
+=-.+++..||.+|.++..+.+.+.+.|-...-.+..++..... ...+...+.++.++++......
T Consensus 82 pqmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~--------------~~~~~~~~ili~g~l~~l~~if 147 (442)
T COG1457 82 PQMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSG--------------TGLPVWAGILIIGVLMTLVTIF 147 (442)
T ss_pred ChheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccC--------------CCCcHHHHHHHHHHHHHHHHHH
Confidence 44467789999999999999999999999999888888861110 1244556666766666666554
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ccccccccCCCCchhHHHHHHHHHHHH-HHhhcccceeehhhh
Q 012458 177 PDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNG-FVMGSFSGVSTTTSIEKMWLVAQALGD-IAFAYPYSLILIEIQ 254 (463)
Q Consensus 177 ~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~faf~~~~~~~~i~ 254 (463)
. .|.+..++..+....+. ..+..++...+.. ..+.... +.++ .+.++..+++. +.+--..-+......
T Consensus 148 G-~r~l~~l~~~a~~~~~~----lf~~l~~~~~~~~~~~~~~~~--~~~~---~~~~fl~a~slv~g~~~sw~~~~aDys 217 (442)
T COG1457 148 G-YRALHKLERIAVPLLLL----LFLYLLALLFRSKGGLDALWV--KGPT---SPLSFLSALSLVIGSFASWGPYAADYS 217 (442)
T ss_pred h-HHHHHHHHHHHHHHHHH----HHHHHHHHHHhcccccceeec--cCCC---cchhHHHHHHHHHHHHHhhhhhhhhhh
Confidence 3 34444455444444332 2223334344322 1111111 1111 11222222222 222233567788899
Q ss_pred hhcCCCCccccchhhhhHHHHHHHHHHHHHHhhhhhhhccCcc
Q 012458 255 DTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT 297 (463)
Q Consensus 255 ~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~~ 297 (463)
|-+|+|+| ++.-.....+......+-+.+|.....+-|+..
T Consensus 218 Ry~~~~t~--~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~ 258 (442)
T COG1457 218 RYAPSPTP--SKAFLAAVLGFFLGTSFMMILGAALAAAAGNAD 258 (442)
T ss_pred hhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 99998733 355566667777777778888888888888766
No 67
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=97.85 E-value=0.049 Score=56.14 Aligned_cols=253 Identities=11% Similarity=-0.020 Sum_probs=137.4
Q ss_pred cccchHHHHHHHHHhhccc-cchhhHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHH
Q 012458 25 KRTGTLWTAVAHIITGVIG-SGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVD 103 (463)
Q Consensus 25 ~~~~s~~~a~~~l~~~~iG-~GiL~LP~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~~ 103 (463)
.|+-+.+-..+...-+.++ .-.+++|....+.|+....+... ..+..+....++.+-.++...++ +..|.+|.-+
T Consensus 37 gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~-~~~~~~~~~~~~~~rl~~~~~~~---~~~T~~d~l~ 112 (493)
T COG0591 37 GRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIG-LLIGAFLLWLLFAPRLRRLAKAR---GATTIPDFLE 112 (493)
T ss_pred CCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccc---CCccHHHHHH
Confidence 4444444566666666665 78999999999999864333332 11223333333332221111111 6779999999
Q ss_pred HHcc-cccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCCccch
Q 012458 104 MCLG-KTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNI 182 (463)
Q Consensus 104 ~~~G-~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l 182 (463)
+-|| |..+.+..+...+..+..+...+...+..++..+. .++..-.++.+.++..-..+.-+++.
T Consensus 113 ~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g--------------i~~~~~~~~~~~~v~~Yt~~gG~~av 178 (493)
T COG0591 113 ARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG--------------ISYVTGILIGALIVALYTFLGGLRAV 178 (493)
T ss_pred HHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC--------------CCHHHHHHHHHHHHHHHHHHcChhHH
Confidence 9999 88999999999999999999999999998855432 12333344555666666677777777
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH--HhcCC--cccccccc--CCCCchhHHHHH--HHHHHHHHHhhcccce-eehhh
Q 012458 183 QSLSVIAAVMSFAYSFIGFGLGVAK--VIGNG--FVMGSFSG--VSTTTSIEKMWL--VAQALGDIAFAYPYSL-ILIEI 253 (463)
Q Consensus 183 ~~~s~~~~~~~~~~~~i~~~~~~~~--~~~~~--~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~faf~~~~-~~~~i 253 (463)
.+...+-..........+.+..... +.... ..+...+. ..+.+....++. .....+...+.|..++ ..|..
T Consensus 179 ~~Td~iqg~im~i~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~r~ 258 (493)
T COG0591 179 VWTDFIQGLIMLIALIVIPILVLILFGGFGELFAVLASLAPLFLTHPFDGALSPIYIISLIAWGTLFLGYFGQPHILPRF 258 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhcccccccCcccccchHHHHHHHHHHHHHHhhhhcCchhhhhh
Confidence 7777766555443333222222221 01000 00000000 001111112222 2234454445555444 44444
Q ss_pred hhhcCCCCccccchhhhhHHHHHHHHHHHHHHhhhhhhhccCc
Q 012458 254 QDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDN 296 (463)
Q Consensus 254 ~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~ 296 (463)
.+ .++++..+++.++.-......+...-.++|+.+...+.+.
T Consensus 259 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~ 300 (493)
T COG0591 259 MA-AKSIKSLPKSARLAGILWPLYCLLGAFLLGLLGIAYFPLL 300 (493)
T ss_pred hh-hccHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 44 4443222345555555555555555566677776666544
No 68
>PRK09395 actP acetate permease; Provisional
Probab=97.78 E-value=0.072 Score=55.83 Aligned_cols=148 Identities=11% Similarity=0.048 Sum_probs=92.9
Q ss_pred cccchHHHHHHHHHhhcccc-chhhHHHHHHHhChhHHHHHHHHHHHHHH-HHHHHHHHcccCCCCCCCCCccccHHHHH
Q 012458 25 KRTGTLWTAVAHIITGVIGS-GVLSLAWSMAQLGWIAGPLAMVIFASVTL-FATFLLCDCHRGPDPEYGPGRNRSYLEAV 102 (463)
Q Consensus 25 ~~~~s~~~a~~~l~~~~iG~-GiL~LP~~f~~~G~~~gii~li~~~~~s~-~t~~ll~~~~~~~~~~~~~~~~~~y~~l~ 102 (463)
.|+.+++...+.+..+.+|+ ..++.|-.....|+.. ....+ ...+.+ ....++.+-.|+. +..|++|.-
T Consensus 68 gr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~-~~~~~-~~~~g~~~~~~~~~~~~r~~-------g~~T~~d~l 138 (551)
T PRK09395 68 GGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDG-LIYSI-GFLVGWPIILFLIAERLRNL-------GKYTFADVA 138 (551)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHH-HHHHH-HHHHHHHHHHHHHHHHHhhC-------CCccHHHHH
Confidence 55667777777777776665 6788898888888743 22221 111211 1122333322322 457999999
Q ss_pred HHHccc-ccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCCccc
Q 012458 103 DMCLGK-TNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHN 181 (463)
Q Consensus 103 ~~~~G~-~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~ 181 (463)
++=||+ +.+.+..+...+..+..........+..++.++. ++....+++.+++++.-....-++.
T Consensus 139 ~~Rygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g--------------i~~~~~ili~~~i~~iYt~~GGm~a 204 (551)
T PRK09395 139 SYRLKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG--------------LNYHVAVVLVGVLMMVYVLFGGMLA 204 (551)
T ss_pred HHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHhhcchHH
Confidence 999984 5777777777666666666667777776666532 3344455666666777778777888
Q ss_pred hhhHHHHHHHHHHH
Q 012458 182 IQSLSVIAAVMSFA 195 (463)
Q Consensus 182 l~~~s~~~~~~~~~ 195 (463)
..+...+-.+..+.
T Consensus 205 v~~TD~iQ~iim~~ 218 (551)
T PRK09395 205 TTWVQIIKAVLLLS 218 (551)
T ss_pred HHHHHHHHHHHHHH
Confidence 77877766655443
No 69
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=97.62 E-value=0.088 Score=54.36 Aligned_cols=155 Identities=7% Similarity=-0.031 Sum_probs=87.7
Q ss_pred cccchHHHHHHHHHhhcccc-chhhHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHH
Q 012458 25 KRTGTLWTAVAHIITGVIGS-GVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVD 103 (463)
Q Consensus 25 ~~~~s~~~a~~~l~~~~iG~-GiL~LP~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~~ 103 (463)
.|+.+++...+.+..+.+++ -.++.|....+.|+.. .....-..........++.+-.++..++ +++..|.+|.-+
T Consensus 35 gr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~-~~~~~g~~~~~~~~~~~~~~~~r~~~~~--~~~~~T~~e~l~ 111 (487)
T TIGR02121 35 GRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSE-LWIAIGLTIGAYINWKFVAPRLRVYTEA--AHNSITLPDFFE 111 (487)
T ss_pred CCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHh--hcCCccHHHHHH
Confidence 56677777777777776665 4677887777888753 2222211122222333343322211100 115679999999
Q ss_pred HHcccccchh---hHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCCcc
Q 012458 104 MCLGKTNAWA---CSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFH 180 (463)
Q Consensus 104 ~~~G~~g~~~---~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~ 180 (463)
+=||++.+.+ ..+...+.........+...+..++.++. ++....+++.++++..-....-++
T Consensus 112 ~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~g--------------i~~~~~iii~~~i~~~Yt~~GGl~ 177 (487)
T TIGR02121 112 NRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFG--------------LDYKTGLLIGALIIVIYTFFGGFL 177 (487)
T ss_pred HHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------ccHHHHHHHHHHHHHHHHHhhhHH
Confidence 9999765443 33333333334444555556666665532 223344555666666667777788
Q ss_pred chhhHHHHHHHHHHHH
Q 012458 181 NIQSLSVIAAVMSFAY 196 (463)
Q Consensus 181 ~l~~~s~~~~~~~~~~ 196 (463)
...+...+-.+..+..
T Consensus 178 av~~TD~iQ~~i~~~~ 193 (487)
T TIGR02121 178 AVSWTDFVQGLLMFFA 193 (487)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888887776655443
No 70
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=97.59 E-value=0.11 Score=52.37 Aligned_cols=203 Identities=12% Similarity=0.164 Sum_probs=101.2
Q ss_pred ccccHHHHHHHHcccccc---hhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccc---cCCCCcccccccchhH--HH
Q 012458 94 RNRSYLEAVDMCLGKTNA---WACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYH---REGHEAACEYSDTYYM--LI 165 (463)
Q Consensus 94 ~~~~y~~l~~~~~G~~g~---~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~---~~~~~~~~~~~~~~~~--~i 165 (463)
...+|+.+.+..||-+|. .+....+.+.-||..+ -..+..+.-++.....+ +++.......+...++ ++
T Consensus 101 ~gIpFpv~~RaSFGi~Ga~~p~l~R~i~A~~WyGvqt---y~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~i 177 (497)
T COG1953 101 YGIPFPVLSRASFGIYGANFPALIRAIVAIVWYGVQT---YAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFI 177 (497)
T ss_pred cCCCchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHH
Confidence 567999999999998876 4455666666666433 23344444443332111 0110111122222222 22
Q ss_pred HHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCchhHHHHHHHHHHHHHHhhcc
Q 012458 166 FGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYP 245 (463)
Q Consensus 166 ~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~ 245 (463)
+-++-++ +..+..+++|++...+..++...+.-.++....+...... ..+.++ ...+.....|.++......+=-|.
T Consensus 178 fW~l~~l-~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~-~~~~p~-~~~~~~~~~w~~~~~~~~~v~~~A 254 (497)
T COG1953 178 FWVLQLL-VLFKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSI-LGELPA-GTVSGSNSSWAFLAGIAAWVGFWA 254 (497)
T ss_pred HHHHHHH-HHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCc-cccCCC-CCCCcchhHHHHHHHHHHHHHHHH
Confidence 2233333 3444567777777766666554444333333332222111 111110 011223334444444433333332
Q ss_pred -cceeehhhhhhcCCCCccccchhhhhHHHHHHHHHHHHHHh----hhhhhhccCcc--ccccccccc
Q 012458 246 -YSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCG----GFGYAAFGDNT--PGNLLTGFG 306 (463)
Q Consensus 246 -~~~~~~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g----~~gy~~fg~~~--~~~il~n~~ 306 (463)
..-|+|...|.-|+| +.-..--.++..+.+.+..++| ..++..||+.. +.+++.++.
T Consensus 255 tl~lN~~DFsRfa~s~----~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~ 318 (497)
T COG1953 255 TLALNIPDFTRFAKSQ----KAQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFL 318 (497)
T ss_pred HHhcCCchhhcccCCh----hhhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhc
Confidence 456889999988876 3333334455555555555444 44788999985 457788886
No 71
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=97.48 E-value=0.0046 Score=59.50 Aligned_cols=165 Identities=16% Similarity=0.111 Sum_probs=111.5
Q ss_pred CCCCCCCCCCCCCCCCCccccchHHHHHHHHHhhccccchhhHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCC
Q 012458 7 DKNHETPLLPAQDPEPFIKRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGP 86 (463)
Q Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~ 86 (463)
|++.++| .++.+|+.+.-..+.+..+.+=..++-|+|.+-=|-.-.+-||+++.+++++-+++.---..+..-....
T Consensus 33 d~~~~TP--A~~~~DGvDYvP~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~Sv- 109 (376)
T PF02554_consen 33 DDSRPTP--AHTMNDGVDYVPTNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASV- 109 (376)
T ss_pred CCCCCCC--eeECCCCCCCCCCchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhh-
Confidence 4444444 3555566666667777888888999999999999999999999999999887766544443333322211
Q ss_pred CCCCCCCccccHHHHHHHHcccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHH
Q 012458 87 DPEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIF 166 (463)
Q Consensus 87 ~~~~~~~~~~~y~~l~~~~~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~ 166 (463)
++ +-+|.+|++++..||+++.+..+...+.+.....++....++.+...- +-....++.+.
T Consensus 110 -R~----~G~Si~~i~~~~lG~~~~~lf~~f~~~~lilV~avF~~v~a~~~~~~p--------------~~~~~~~~~I~ 170 (376)
T PF02554_consen 110 -RH----KGKSIGEIAGKYLGKRAKKLFLIFIFFLLILVIAVFADVVANTFVNSP--------------WAATSSLLFIP 170 (376)
T ss_pred -cC----CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh--------------hHHHHHHHHHH
Confidence 11 334999999999999999999999999999988888887777664310 11122334444
Q ss_pred HHHHHHhhcCCCccchhhHHHHHHHHH
Q 012458 167 GAVQLILSQAPDFHNIQSLSVIAAVMS 193 (463)
Q Consensus 167 ~~~~~pl~~~~~l~~l~~~s~~~~~~~ 193 (463)
..+++-+...|+=-++...+.++++..
T Consensus 171 ~Ai~~G~~~y~~~~~~~~~t~i~vvll 197 (376)
T PF02554_consen 171 IAILFGLLVYKRGGNLGPATIIGVVLL 197 (376)
T ss_pred HHHHHhHhheecCCchHhhHHHHHHHH
Confidence 444444444443344566666666554
No 72
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=97.45 E-value=0.057 Score=53.97 Aligned_cols=88 Identities=13% Similarity=0.054 Sum_probs=54.7
Q ss_pred ccchHHHHHHHHHhhccccc-hhhHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccH-----H
Q 012458 26 RTGTLWTAVAHIITGVIGSG-VLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSY-----L 99 (463)
Q Consensus 26 ~~~s~~~a~~~l~~~~iG~G-iL~LP~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y-----~ 99 (463)
++.|.+|+.+..+.+.+|+| ++++|-+.+..| ..++.++-+.+++..-+.+.-.-...+..+++ +..+| .
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GG-pGAvFWMWI~allGm~~~~~e~~L~~~yr~~~---~~g~~~GGP~y 120 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAIAIGG-PGAVFWMWVTAFIGMATKFVESTLAQKYRERD---ADGVFRGGPMY 120 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHHHHHHHHeeeeC---CCCCEecChHH
Confidence 45799999999999999998 999999987776 55666665555554444332222221111111 11124 5
Q ss_pred HHHHHHcccccchhhHHH
Q 012458 100 EAVDMCLGKTNAWACSFF 117 (463)
Q Consensus 100 ~l~~~~~G~~g~~~~~~~ 117 (463)
.+-+...||+...+..++
T Consensus 121 yi~~gl~~k~lg~lfa~~ 138 (425)
T TIGR00835 121 YIKKGLGMRWLAVLFAVF 138 (425)
T ss_pred HHHHHhCccHHHHHHHHH
Confidence 666667777655555555
No 73
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=97.43 E-value=0.2 Score=51.89 Aligned_cols=153 Identities=9% Similarity=-0.017 Sum_probs=87.8
Q ss_pred cccchHHHHHHHHHhhcccc-chhhHHHHHHHhChhHHHHHHHHHHHHH-HHHHHHHHHcccCCCCCCCCCccccHHHHH
Q 012458 25 KRTGTLWTAVAHIITGVIGS-GVLSLAWSMAQLGWIAGPLAMVIFASVT-LFATFLLCDCHRGPDPEYGPGRNRSYLEAV 102 (463)
Q Consensus 25 ~~~~s~~~a~~~l~~~~iG~-GiL~LP~~f~~~G~~~gii~li~~~~~s-~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~ 102 (463)
.|+.+++...+.+..+.+|+ -.++.|....+.|+-. . ...+...+. .....++..-.+.. .+++. +..|.+|.-
T Consensus 39 gr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~-~-~~~~~~~~~~~l~~~~~~~~l~~~-~~~~~-~~~T~~e~l 114 (502)
T PRK15419 39 GRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISE-S-WIAIGLTLGAWINWKLVAGRLRVH-TEYNN-NALTLPDYF 114 (502)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHH-H-HHHHHHHHHHHHHHHHHHHHHHHH-HHHhc-CceeHHHHH
Confidence 56677778778777776666 5567898888889753 1 111111111 11122222111100 00011 567999999
Q ss_pred HHHcccccch---hhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCCc
Q 012458 103 DMCLGKTNAW---ACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDF 179 (463)
Q Consensus 103 ~~~~G~~g~~---~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l 179 (463)
++=||++.+. +..+...+.....+..-+...+..++.++. ++....+++.+++++.-....-+
T Consensus 115 ~~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g--------------i~~~~~iii~~~iv~iYt~~GGl 180 (502)
T PRK15419 115 TGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFG--------------MSYETALWAGAAATILYTFIGGF 180 (502)
T ss_pred HHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHHhhhH
Confidence 9999976543 344444444444444555555666655432 33444566666777777888888
Q ss_pred cchhhHHHHHHHHHHH
Q 012458 180 HNIQSLSVIAAVMSFA 195 (463)
Q Consensus 180 ~~l~~~s~~~~~~~~~ 195 (463)
+...+...+-.+..+.
T Consensus 181 ~aV~~TD~iQ~~imi~ 196 (502)
T PRK15419 181 LAVSWTDTVQASLMIF 196 (502)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888877766554
No 74
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=97.40 E-value=0.17 Score=50.44 Aligned_cols=132 Identities=14% Similarity=0.082 Sum_probs=76.6
Q ss_pred chHHHHHHHHHhhccccchhhHHHHH-HHhChhHHHHHHHHHHHHHHHHHHHHH-HcccCCCCCCCCCccccHHHHHHHH
Q 012458 28 GTLWTAVAHIITGVIGSGVLSLAWSM-AQLGWIAGPLAMVIFASVTLFATFLLC-DCHRGPDPEYGPGRNRSYLEAVDMC 105 (463)
Q Consensus 28 ~s~~~a~~~l~~~~iG~GiL~LP~~f-~~~G~~~gii~li~~~~~s~~t~~ll~-~~~~~~~~~~~~~~~~~y~~l~~~~ 105 (463)
.+..+..+.+..+-+|.|-++=--.+ ++-|+ .+++.++...+..+-...+. |... ..| ++..|..++.
T Consensus 17 l~~lGPg~lva~a~iDpg~~at~~~~Ga~~Gy--~ll~vills~l~~~~~Q~~~arLgi----vTG----~~laq~ir~~ 86 (416)
T COG1914 17 LALLGPGFLVAVAYVDPGNIATSAQAGAQYGY--SLLWVILLSNLMAYILQELSARLGI----VTG----KGLAEAIRER 86 (416)
T ss_pred HHhhCcHHHHHHhccCchhHHhhhhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH----HhC----CcHHHHHHHH
Confidence 45556666666666776655432222 23343 33333333333333222221 1111 113 3889999999
Q ss_pred cccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCCccchh
Q 012458 106 LGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQ 183 (463)
Q Consensus 106 ~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~ 183 (463)
++|+..++..+...+....++++-.+-.+-.++-+.. .+..+-.++.++..+.....|+.+.+.
T Consensus 87 y~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~~--------------ip~~~g~iItav~~~iil~~~~~r~~E 150 (416)
T COG1914 87 YLPGLGILLWILAEIAGIATDIAEVAGIAIALNLLFG--------------IPLIIGAVITAVDVLIILLLKGYRLLE 150 (416)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------------ChHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 9999999999999999999999999988888877642 223334455555555555544333333
No 75
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=97.35 E-value=0.2 Score=49.91 Aligned_cols=183 Identities=11% Similarity=-0.015 Sum_probs=104.4
Q ss_pred ccccHHHHHHHHcc-cccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHH
Q 012458 94 RNRSYLEAVDMCLG-KTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLI 172 (463)
Q Consensus 94 ~~~~y~~l~~~~~G-~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p 172 (463)
.++|++|....=++ ++.|++..+.-.+..+...++.+.-.+..+.-++.. ++..-+++-.+++..
T Consensus 102 GkyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~gv--------------~~~vgv~ig~ilm~~ 167 (529)
T COG4147 102 GKYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLGV--------------PYHVGVVIGGILMMV 167 (529)
T ss_pred CCcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCC--------------CceeehhhHhHHHHH
Confidence 45799996665554 567888777777777777788888888877776542 233345555566666
Q ss_pred hhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--------ccccccCCCCchhHHHHHHHHHHHHHHhhc
Q 012458 173 LSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFV--------MGSFSGVSTTTSIEKMWLVAQALGDIAFAY 244 (463)
Q Consensus 173 l~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~faf 244 (463)
-..+.-++...|++.+--+......++..+....+...+..+ ++...+.+..++-....+-.+.++...--.
T Consensus 168 Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm 247 (529)
T COG4147 168 YVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALM 247 (529)
T ss_pred HHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHH
Confidence 677788888888887765554433333333333333222100 000000010111111122223333322222
Q ss_pred ccceeehhhhhhcCCCCccccchhhhhHHHHHHHHHHHHHHhhhhhh
Q 012458 245 PYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYA 291 (463)
Q Consensus 245 ~~~~~~~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~ 291 (463)
.+..-+|.+.-.--. .|+.|+-||++.++......+|+..-+.|+.
T Consensus 248 ~GTAgLPHil~RFfT-vp~~k~AR~Sv~wA~~fIg~fYi~~~~ig~~ 293 (529)
T COG4147 248 VGTAGLPHILMRFFT-VPDAKEARKSVFWATGFIGIFYILTPIIGAG 293 (529)
T ss_pred HccCCCCeEEEEEEe-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445554433332 3456899999999999999999987777765
No 76
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=97.21 E-value=0.39 Score=50.42 Aligned_cols=149 Identities=8% Similarity=-0.020 Sum_probs=94.4
Q ss_pred cccchHHHHHHHHHhhcccc-chhhHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHH
Q 012458 25 KRTGTLWTAVAHIITGVIGS-GVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVD 103 (463)
Q Consensus 25 ~~~~s~~~a~~~l~~~~iG~-GiL~LP~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~~ 103 (463)
.|+.+++...+.+..+.+++ ..++.|....+.|+-. .....-..........++.+-.|+. +..|..|.-+
T Consensus 31 Gr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~-~~~~~g~~~~~~~~~~~~~p~~rr~-------~~~T~~e~l~ 102 (552)
T TIGR03648 31 GRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDG-LAYLMGWTGGYVLLALLLAPYLRKF-------GKYTVPDFIG 102 (552)
T ss_pred CCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHHHHHHHHHHHHC-------CCccHHHHHH
Confidence 56778888888888887765 6788888877778742 2111111111112334444444432 5679999889
Q ss_pred HHcccc-cchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCCccch
Q 012458 104 MCLGKT-NAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNI 182 (463)
Q Consensus 104 ~~~G~~-g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l 182 (463)
+-||++ .+.+..+...+.........+...+..++.++. ++....+++.+++++.-....-++..
T Consensus 103 ~Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g--------------i~~~~~iii~~~i~~iYt~~GG~~aV 168 (552)
T TIGR03648 103 DRYYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE--------------VDFETGVFIGMAIVFFYAVLGGMKGV 168 (552)
T ss_pred HHhCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 899855 577777777666776666777777777766542 23334455666666666777778888
Q ss_pred hhHHHHHHHHHHH
Q 012458 183 QSLSVIAAVMSFA 195 (463)
Q Consensus 183 ~~~s~~~~~~~~~ 195 (463)
.+...+-.+..+.
T Consensus 169 ~~TD~iQ~iim~i 181 (552)
T TIGR03648 169 TWTQVAQYIVLIV 181 (552)
T ss_pred HHHHHHHHHHHHH
Confidence 8877777555443
No 77
>PRK00701 manganese transport protein MntH; Reviewed
Probab=97.18 E-value=0.33 Score=49.16 Aligned_cols=45 Identities=16% Similarity=0.265 Sum_probs=34.5
Q ss_pred ccHHHHHHHHcccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHH
Q 012458 96 RSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAI 140 (463)
Q Consensus 96 ~~y~~l~~~~~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i 140 (463)
++..|+.++.+||+..++..+...+.+.+.....++-.+..++.+
T Consensus 94 ~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll 138 (439)
T PRK00701 94 RDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLL 138 (439)
T ss_pred CCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999998888777777777777777776666555543
No 78
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.16 E-value=0.0075 Score=61.44 Aligned_cols=184 Identities=14% Similarity=0.069 Sum_probs=89.7
Q ss_pred ccHHHHHHHHcccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCC-cccccccchhH--HHHHHHHHH
Q 012458 96 RSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHE-AACEYSDTYYM--LIFGAVQLI 172 (463)
Q Consensus 96 ~~y~~l~~~~~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~-~~~~~~~~~~~--~i~~~~~~p 172 (463)
.++..+.|..||++|..+..+...+...|-......+.++.+..+.+....+.+... .........++ +++.++..+
T Consensus 71 l~~~v~sR~~FG~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 150 (440)
T PF02133_consen 71 LPTMVLSRASFGYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGNAIIGIALPLWVCFFIFWLIQTL 150 (440)
T ss_dssp --HHHHTTTTS-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH-----------HHHHHHHHHHHH
T ss_pred CCchhcchhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhhhhhcchhhHHHHHHHHHHHHHH
Confidence 488899999999999999999999999999999999999999998875321000000 00001111222 222233333
Q ss_pred hhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCC-CCchhHHHHHHHHHHHHHHhhc-ccceee
Q 012458 173 LSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVS-TTTSIEKMWLVAQALGDIAFAY-PYSLIL 250 (463)
Q Consensus 173 l~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~faf-~~~~~~ 250 (463)
... .-.+.++.+..+.........+ ....+...+.+. +.....+ ..++.. .+..++...+-.+ ..-.+.
T Consensus 151 ~~~-~g~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~ 221 (440)
T PF02133_consen 151 FAI-YGMKALRRLAVIAAPILLVVFI---GMLIWALSKAGG--GPLLSAPASPSPSG---SFLAAIALVIGSWISWAPNA 221 (440)
T ss_dssp HHC-THHHHHHHHHHCCHHHHHHHHH---HHHHHHHHHCT---HHHCCS--S----S----HHHHHHHHHCCCHHHHCCC
T ss_pred HHh-cCHHHHHhHHhhhhHHHHhhhh---heeEEEeecCCc--chhhhCcccchhHH---HHHHHHHHHHhhhhhhhhcc
Confidence 322 3345555555544443322111 122222222211 1111111 011001 2223332222222 234566
Q ss_pred hhhhhhcCCCCccccchhhhhHHHHHHHHHHHHHHhhhhhhh
Q 012458 251 IEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAA 292 (463)
Q Consensus 251 ~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~ 292 (463)
+...|.+|++ ++-.+....+..........+|++|...
T Consensus 222 ~DysRy~~~~----~~~~~~~~~~~~~~~~~~~~~g~lg~~~ 259 (440)
T PF02133_consen 222 SDYSRYAKSD----TSAWWGFWLGFPGGFIPFVLVGILGAAA 259 (440)
T ss_dssp HHHHTTC--H----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHhhCCCC----CCcEEEEeehhhhHHHHHHHHHHHHHHH
Confidence 7889999974 5556667777777777777767665543
No 79
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=96.84 E-value=0.59 Score=46.28 Aligned_cols=70 Identities=11% Similarity=0.116 Sum_probs=42.4
Q ss_pred HHHhhccccchhhHHHHH-HHhC--hhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHHHcccccch
Q 012458 36 HIITGVIGSGVLSLAWSM-AQLG--WIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAW 112 (463)
Q Consensus 36 ~l~~~~iG~GiL~LP~~f-~~~G--~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~g~~ 112 (463)
.+....+|+|.|-.|-.. +++| |..+++..++.++..-..+.. +. ++.| .+|+++.++. ||+...
T Consensus 3 ~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~---av----~~~g----G~~~~l~~~~-g~~f~~ 70 (378)
T TIGR00796 3 MLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI---AL----ALVG----GGYDSLSARI-GKVFGI 70 (378)
T ss_pred HHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh---ee----eecC----CCHHHHHHHh-ChHHHH
Confidence 455678999999997664 3555 677777777777665554443 11 1112 2788887754 565554
Q ss_pred hhHHH
Q 012458 113 ACSFF 117 (463)
Q Consensus 113 ~~~~~ 117 (463)
+....
T Consensus 71 lf~~~ 75 (378)
T TIGR00796 71 LFTVI 75 (378)
T ss_pred HHHHH
Confidence 44333
No 80
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=96.44 E-value=0.068 Score=53.99 Aligned_cols=124 Identities=15% Similarity=0.124 Sum_probs=90.4
Q ss_pred CCCCCCCCCCCCCCCccccchHHHHHHHHHhhccccchhhHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCC
Q 012458 9 NHETPLLPAQDPEPFIKRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDP 88 (463)
Q Consensus 9 ~~~~~l~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~ 88 (463)
|++++.-.+..+|+.+.-..+.+-.+-|=..++-|+|.+-=|---++-||.+|.+++++-+++.---..++.-.... +
T Consensus 33 dp~R~TPA~~~nDG~DYVPtnk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~Sv--R 110 (575)
T COG1966 33 DPNRPTPAHRKNDGVDYVPTNKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSV--R 110 (575)
T ss_pred CCCCCCCceeccCCcccccCCchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeee--c
Confidence 33444445666677666667777788888899999999999999999999999999887766544333333322111 1
Q ss_pred CCCCCccccHHHHHHHHcccccchhhHHHHHHHHHhHHHHHHHHHHhhHH
Q 012458 89 EYGPGRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMR 138 (463)
Q Consensus 89 ~~~~~~~~~y~~l~~~~~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~ 138 (463)
+.| +|.+|++++.+|++.+.+..+...+...-...++.....+.+.
T Consensus 111 ~~G----~Si~~ia~~~lG~~a~~~~~~~~l~iliiv~Avfa~vv~~~l~ 156 (575)
T COG1966 111 HGG----KSIGEIAGKYLGRTAKVFFLLLALILLILVGAVFAAVIAKLLA 156 (575)
T ss_pred cCC----ccHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 124 4999999999999999999888887777777666666655553
No 81
>PRK15015 carbon starvation protein A; Provisional
Probab=96.43 E-value=0.056 Score=55.86 Aligned_cols=121 Identities=16% Similarity=0.116 Sum_probs=87.4
Q ss_pred CCCCCCCCCCCCCCCCCccccchHHHHHHHHHhhccccchhhHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHH--ccc
Q 012458 7 DKNHETPLLPAQDPEPFIKRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCD--CHR 84 (463)
Q Consensus 7 ~~~~~~~l~~~~~~~~~~~~~~s~~~a~~~l~~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~s~~t~~ll~~--~~~ 84 (463)
|++.++| .++.+|+.+.-..+.+--+-|=..++-|+|.+-=|..-.+-||.++.+++++-.++.---.-+..- +.|
T Consensus 64 D~~r~TP--A~~~~DG~DYvPt~k~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~R 141 (701)
T PRK15015 64 DPTRMTP--AVRHNDGLDYVPTDKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTR 141 (701)
T ss_pred CCCCCCC--ceECCCCCCcCcCCccchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeeec
Confidence 3344444 355555555545555566778888999999999999999999999999988776654333333222 222
Q ss_pred CCCCCCCCCccccHHHHHHHHcccccchhhHHHHHHHHHhHHHHHHHHHHhhH
Q 012458 85 GPDPEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISM 137 (463)
Q Consensus 85 ~~~~~~~~~~~~~y~~l~~~~~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l 137 (463)
+ +| +|..|++++..||+++.+..+.+.+.+.-...++...+.+.+
T Consensus 142 ~----~G----rSig~ia~~~iG~~~~~lfli~i~~iliiviAvfalvvv~al 186 (701)
T PRK15015 142 R----DG----RSLGELVKEEMGPTAGVIALVACFMIMVIILAVLAMIVVKAL 186 (701)
T ss_pred C----CC----ccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 24 499999999999999999998888888777777777766666
No 82
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=96.16 E-value=1.9 Score=45.47 Aligned_cols=104 Identities=20% Similarity=0.265 Sum_probs=63.7
Q ss_pred chHHHHHHHHHhhcccc-chhhHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccC-CCCCCCCCccccHHHHHHHH
Q 012458 28 GTLWTAVAHIITGVIGS-GVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRG-PDPEYGPGRNRSYLEAVDMC 105 (463)
Q Consensus 28 ~s~~~a~~~l~~~~iG~-GiL~LP~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~-~~~~~~~~~~~~y~~l~~~~ 105 (463)
+++++...=-+-.+.|. =.+-|-|....+|...+.++..+|++.+..|+.-+...+.. .-|..| +|--+ .+.
T Consensus 115 Gt~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGG-----sYfmI-SRs 188 (1075)
T KOG2082|consen 115 GTLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGG-----SYFMI-SRS 188 (1075)
T ss_pred ceeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC-----eeEEE-ecc
Confidence 34444333344445554 23457888999999999999999999999988877664422 112222 34322 235
Q ss_pred cccccchhhHHHHHHHHHhHHHHHHHHHHhhH
Q 012458 106 LGKTNAWACSFFVHVGLYGTAIAYTVTSAISM 137 (463)
Q Consensus 106 ~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l 137 (463)
+|+-.+-.+.++..+..-.....|++-.-+++
T Consensus 189 LGPEFGgAVGlcFYLgtT~AaaMYIlGaVEi~ 220 (1075)
T KOG2082|consen 189 LGPEFGGAVGLCFYLGTTVAAAMYILGAVEIF 220 (1075)
T ss_pred cCccccceeeehhhhhhHHHHHHHHHhHHHHH
Confidence 57766666666666666555666666555544
No 83
>PRK10484 putative transporter; Provisional
Probab=96.14 E-value=2.1 Score=44.65 Aligned_cols=156 Identities=10% Similarity=0.029 Sum_probs=80.9
Q ss_pred cccchHHHHHHHHHhhcccc-chhhHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHH
Q 012458 25 KRTGTLWTAVAHIITGVIGS-GVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVD 103 (463)
Q Consensus 25 ~~~~s~~~a~~~l~~~~iG~-GiL~LP~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~~ 103 (463)
.|+.+++...+.+..+.+++ ..++.|-...+.|+.. ................++..-.++. +..|.+|.-+
T Consensus 37 gR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~-~~~~~~~~~~~~~~~~~~~p~~~r~-------~~~T~~e~l~ 108 (523)
T PRK10484 37 GRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSV-MAWEVTAAIALIILALIFLPRYLKS-------GITTIPDFLE 108 (523)
T ss_pred CCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHH-HHHHHHHHHHHHHHHHHHHHHHHhc-------CCccHHHHHH
Confidence 56777777777777766655 5677888887788643 2111111111112223333222221 5679999999
Q ss_pred HHcccccchhhHHHHHHHHHhH-HHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhH----HHHHHHHHHhhcCCC
Q 012458 104 MCLGKTNAWACSFFVHVGLYGT-AIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYM----LIFGAVQLILSQAPD 178 (463)
Q Consensus 104 ~~~G~~g~~~~~~~~~~~~~g~-~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~----~i~~~~~~pl~~~~~ 178 (463)
+-||++.+.+......+..... +...+...+..+..++... . ....+..... ++.+++...-....-
T Consensus 109 ~Ryg~~~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~----~----~~gi~~~~~~~~~~~~~~~i~~~Yt~~GG 180 (523)
T PRK10484 109 ERYDKTTRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVS----E----LLGISYGAAIWLLVWLIGIIGAIYAVFGG 180 (523)
T ss_pred HhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch----h----hcCCcHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 9999987766555444333322 2222223333444432110 0 0011221111 122334455567777
Q ss_pred ccchhhHHHHHHHHHHHH
Q 012458 179 FHNIQSLSVIAAVMSFAY 196 (463)
Q Consensus 179 l~~l~~~s~~~~~~~~~~ 196 (463)
++...+...+-.+..+..
T Consensus 181 l~aV~~TD~iQ~vim~i~ 198 (523)
T PRK10484 181 LKAVAVSDTINGIGLLIG 198 (523)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888888776665443
No 84
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=95.70 E-value=2.4 Score=41.81 Aligned_cols=77 Identities=13% Similarity=0.235 Sum_probs=53.2
Q ss_pred cHHHHHHHHcccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhc-
Q 012458 97 SYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQ- 175 (463)
Q Consensus 97 ~y~~l~~~~~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~- 175 (463)
+..|..++.+||+..++.-+...+.+.....+-+...+..++-+. ..+...+.++.++..+-+.+
T Consensus 43 ~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~--------------g~~~~~~~~~~~~~~~~ll~~ 108 (358)
T PF01566_consen 43 GLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLF--------------GIPLWIWVLLVAVIAILLLWL 108 (358)
T ss_pred ChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------------CCCcHHHHHHHHHHHHHHHHH
Confidence 888888999999999888888888888888887777777665543 13344566665555555544
Q ss_pred -CCCccchhhHHH
Q 012458 176 -APDFHNIQSLSV 187 (463)
Q Consensus 176 -~~~l~~l~~~s~ 187 (463)
.++.+.+..+..
T Consensus 109 ~~~~y~~~E~~~~ 121 (358)
T PF01566_consen 109 SSGGYRRLERILK 121 (358)
T ss_pred HhccchHHHHHHH
Confidence 555555555443
No 85
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=95.14 E-value=0.55 Score=46.46 Aligned_cols=130 Identities=13% Similarity=0.228 Sum_probs=83.7
Q ss_pred HHHHhhccccchh----hHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHHHccccc
Q 012458 35 AHIITGVIGSGVL----SLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTN 110 (463)
Q Consensus 35 ~~l~~~~iG~GiL----~LP~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~g 110 (463)
.++++++-+-|+- -.|.+. .+|.+.++.+..+..-+.+....-..+..+ .+++..-..+++++.||+.|
T Consensus 197 ~iiv~~i~~~g~~~~~~~~~~~i-~~G~ia~i~l~~vY~~L~~lGa~~~~~~~~------~~~~~~~l~~~a~~~~G~~G 269 (378)
T TIGR00796 197 IIVVNAIRSRGVTKPKKITKYTI-KAGLIAAVLLAFIYLSLFYLGATSAAAAGD------AVNGAQILSAYSQHLFGSLG 269 (378)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCcHhhhcc------cCCcHHHHHHHHHHHcchhH
Confidence 3444555444552 234444 466666666666655555555432222111 01144578899999999999
Q ss_pred chhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCCccchhhH
Q 012458 111 AWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSL 185 (463)
Q Consensus 111 ~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~ 185 (463)
+.+..+.+.+.|+++++......++.+..+.+ ..+++.|+++..+..+.++.. .++.+-..
T Consensus 270 ~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~-------------k~~y~~~v~~~~l~s~~ia~~-Gl~~Ii~~ 330 (378)
T TIGR00796 270 SFLLGLIITLACLTTAVGLTTACSEYFHKLVP-------------KLSYKTWVIVFTLFSFIVANL-GLTQIISI 330 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------CCCHHHHHHHHHHHHHHHHHh-CHHHHHHH
Confidence 99999999999999999999999998877632 255777777777666666554 33443333
No 86
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=94.83 E-value=0.47 Score=47.50 Aligned_cols=122 Identities=16% Similarity=0.185 Sum_probs=88.0
Q ss_pred HHhhccccchh---hHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHHHcccccchh
Q 012458 37 IITGVIGSGVL---SLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWA 113 (463)
Q Consensus 37 l~~~~iG~GiL---~LP~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~g~~~ 113 (463)
++++.-.-|.- ..-....++|++.++.+.++...+.+.....-.... ..+++..-..+++++.+|+.|..+
T Consensus 205 Ii~~i~~~g~~~~k~~~~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~------~~~~g~~lL~~i~~~~~G~~G~~l 278 (427)
T PF05525_consen 205 IINAIRQKGYKDKKEIKKYTIKAGLIAGILLALIYGGLAYLGATSSGSFP------DDINGAELLSQIANHLFGSAGQIL 278 (427)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccccc------CCCCHHHHHHHHHHHHcChhHHHH
Confidence 44555555555 455556678888777777766666655443221111 111145577889999999999999
Q ss_pred hHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCC
Q 012458 114 CSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAP 177 (463)
Q Consensus 114 ~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~ 177 (463)
..+.+.+.|+-+++......+|...+..+ ..+++.|++++.++-+.++.+.
T Consensus 279 l~iiv~lACLTTaIGL~~a~a~yf~~~~~-------------kisY~~~v~i~~i~S~~ian~G 329 (427)
T PF05525_consen 279 LGIIVFLACLTTAIGLISACAEYFSELFP-------------KISYKVWVIIFTIFSFIIANLG 329 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------------ccChHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999998764 2568888888887777777653
No 87
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=94.82 E-value=4.9 Score=40.23 Aligned_cols=52 Identities=19% Similarity=0.175 Sum_probs=38.9
Q ss_pred CccccchHHHHHHHHHhhccccchh-hHHHHHHHhChhHHHHHHHHHHHHHHHH
Q 012458 23 FIKRTGTLWTAVAHIITGVIGSGVL-SLAWSMAQLGWIAGPLAMVIFASVTLFA 75 (463)
Q Consensus 23 ~~~~~~s~~~a~~~l~~~~iG~GiL-~LP~~f~~~G~~~gii~li~~~~~s~~t 75 (463)
+++++.|.+|+++.-+.+.+|+|-+ +..-|....|- .++.++-+.+++..-+
T Consensus 14 ~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGP-GAiFWMWi~a~~Gmat 66 (416)
T PF01235_consen 14 EEEGGISPFQALCTALAGTVGTGNIAGVATAIAIGGP-GAIFWMWISALLGMAT 66 (416)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHhhch-hHHHHHHHHHHHHHHH
Confidence 3355789999999999999999855 47888875554 4777777777655444
No 88
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=93.93 E-value=7.8 Score=38.99 Aligned_cols=46 Identities=13% Similarity=0.191 Sum_probs=34.7
Q ss_pred chHHHHHHHHHhhccccchhhHHHHHH-HhC--hhHHHHHHHHHHHHHH
Q 012458 28 GTLWTAVAHIITGVIGSGVLSLAWSMA-QLG--WIAGPLAMVIFASVTL 73 (463)
Q Consensus 28 ~s~~~a~~~l~~~~iG~GiL~LP~~f~-~~G--~~~gii~li~~~~~s~ 73 (463)
...+...+.+.....|+|=|-.|-..- ++| |..+.+.+++.++.--
T Consensus 3 k~~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP 51 (427)
T PF05525_consen 3 KDILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLP 51 (427)
T ss_pred chhhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 344566778888999999999987754 444 8888888888877433
No 89
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=93.25 E-value=9.6 Score=40.10 Aligned_cols=52 Identities=13% Similarity=0.142 Sum_probs=37.6
Q ss_pred HHHHHHHhhcccceeehhhhhhcCCCCccccchhhhhHHHHHHHHHHHHHHhhhh
Q 012458 235 QALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFG 289 (463)
Q Consensus 235 ~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~g 289 (463)
..||++.=+=.+...--....|+|+| .+..+|-...+....+++|.++.++-
T Consensus 298 ~~FgV~F~g~tGimAGAnMSgELk~P---SkSIP~GTl~ava~Tf~~Yvl~~flm 349 (945)
T KOG1288|consen 298 STFGVFFPGTTGIMAGANMSGELKAP---SKSIPKGTLSAVAFTFFVYVLVIFLM 349 (945)
T ss_pred hhheeeeccchhhhcCCCcCccccCc---cccCCccchHHHHHHHHHHHHHHHHh
Confidence 44555544444444445566799998 37899999999999999999887753
No 90
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=93.14 E-value=2.1 Score=42.22 Aligned_cols=131 Identities=16% Similarity=0.201 Sum_probs=90.6
Q ss_pred HHhhccccchhhHH---HHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHHHcccccchh
Q 012458 37 IITGVIGSGVLSLA---WSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWA 113 (463)
Q Consensus 37 l~~~~iG~GiL~LP---~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~g~~~ 113 (463)
++|+.=.-|+-.=. .....+|++.++.+.++...+.+.... .++..+.. +++..-..+..++.||+.|.++
T Consensus 207 Iv~alk~~g~~~~~~~~~~~~~aglIa~i~La~iY~~L~ylGa~-----s~~~~~~~-~nG~~IL~~~s~~~fG~~G~~l 280 (431)
T COG1114 207 IVNALKSKGVTTKKQIIKYTIKAGLIAAILLALIYLSLFYLGAT-----SASAAGLA-ANGGQILSAYSQHLFGSYGSIL 280 (431)
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----hHhhcccc-cchHHHHHHHHHHHhchhhHHH
Confidence 34444444554433 444478888888888777777776621 11111110 1134467788999999999999
Q ss_pred hHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCCccchhhHHH
Q 012458 114 CSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSV 187 (463)
Q Consensus 114 ~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~ 187 (463)
..+++.+.|.-+++..+..++|...+.++. .++..|..++.++-+.++.+. ++++-..|.
T Consensus 281 L~~iv~lACLTTaiGLi~a~aefF~~~~p~-------------~SY~~~v~if~i~sflvan~G-L~~Ii~isv 340 (431)
T COG1114 281 LGLIVFLACLTTAVGLIVACAEFFSKLVPK-------------LSYKTWVIIFTLISFLVANLG-LEQIIKISV 340 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------------ccHHHHHHHHHHHHHHHHHhh-HHHHHHHHH
Confidence 999999999999999999999999887653 567888888888877776643 444444443
No 91
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=92.80 E-value=0.27 Score=50.20 Aligned_cols=225 Identities=16% Similarity=0.147 Sum_probs=120.3
Q ss_pred hhhHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHHHcccccchhhHHHHHHHHHhH
Q 012458 46 VLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGT 125 (463)
Q Consensus 46 iL~LP~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~g~~~~~~~~~~~~~g~ 125 (463)
.|-++|...|+|+..+++++..+..++..|..-..-...+..-+.|. .|- +..+.+|+..+-.+.+...+.+.-.
T Consensus 50 flrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg----~yf-lis~slg~efggsigiIy~f~~aVa 124 (643)
T KOG2083|consen 50 FLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGG----VYF-LISRSLGPEFGGSIGIIYAFANAVA 124 (643)
T ss_pred hhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCc----EEE-EEEecccccccchhHHHHHHHHHHH
Confidence 56789999999999999988888777777665443322221111121 221 2234567776667777777777888
Q ss_pred HHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHH
Q 012458 126 AIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGV 205 (463)
Q Consensus 126 ~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~ 205 (463)
+..|.+-.++++.+++... ..+ .... ...+..+++.-.+.. ..+|.+.+-+++.++.+ +.+.--+
T Consensus 125 ~am~~vgfaEsv~~l~~~~--s~~------~i~g--i~~vt~~ill~i~~a----g~~w~~k~q~~ll~il~-iai~~f~ 189 (643)
T KOG2083|consen 125 TAMYVVGFAESVAHLFETE--SKE------MIDG--IGSVTVLILLAINVA----GVEWEAKLQIVLLLILL-IAIADFL 189 (643)
T ss_pred HHHhhhhHHHHHHHHHHhc--cHH------Hhcc--hhHHHHHHHHHhhhc----cchhHHHHHHHHHHHHH-HHHHHhh
Confidence 8899999999999988752 110 1111 111222222222332 23444443333322111 1111111
Q ss_pred -HHHhcCC-cccc----ccccCC-CC-chhHHHHHHHHHHHHHHhhcccceeehhhhhhcCCCCccccchhhhhHHHHHH
Q 012458 206 -AKVIGNG-FVMG----SFSGVS-TT-TSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIIT 277 (463)
Q Consensus 206 -~~~~~~~-~~~~----~~~~~~-~~-~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~a~~~ 277 (463)
...+..+ ...+ +...++ +. +.......+|..|+++.=+..+.-.=..+..++++| .+..++-...+...
T Consensus 190 ~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~~tfF~vf~vfFpaatgilaG~nisGdL~~P---q~~IP~GaL~Ai~v 266 (643)
T KOG2083|consen 190 VGSFFSPNEFSSGFFGYRADIFVENLNPDIDPGYTFFSVFAVFFPAATGILAGANISGDLKDP---QKAIPLGALLAIGV 266 (643)
T ss_pred hhhccChhhhcccccccchhhcccCCCCCcCCCCceEeeeeeecchhhhhhccccccCCCCCc---hhhcccchhhhhhh
Confidence 1011111 0000 000000 00 011111345555566666666666666778899998 57889999999999
Q ss_pred HHHHHHHH----hhhhhhhc
Q 012458 278 TTIFYLFC----GGFGYAAF 293 (463)
Q Consensus 278 ~~~~y~~~----g~~gy~~f 293 (463)
...+|..+ |-.+-..+
T Consensus 267 st~~yl~~i~~~Ga~~~r~~ 286 (643)
T KOG2083|consen 267 STLLYLIFIADLGATPVRDA 286 (643)
T ss_pred hhhhhhhhhhhcccHHHHHH
Confidence 99999543 44444444
No 92
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=88.92 E-value=6.5 Score=39.63 Aligned_cols=122 Identities=15% Similarity=0.149 Sum_probs=85.2
Q ss_pred HHHhhccccchh---hHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHHHcccccch
Q 012458 36 HIITGVIGSGVL---SLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAW 112 (463)
Q Consensus 36 ~l~~~~iG~GiL---~LP~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~g~~ 112 (463)
.+++++-.-|+- ..-....++|.+.++.+.++...+.+....-- ...+. .+++..-.....++.+|+.|+.
T Consensus 208 iii~~i~~~G~~~~~~~~k~t~~ag~ia~~~L~~vY~gL~~lGa~s~----~~~~~--~~~g~~il~~~~~~~~G~~G~~ 281 (439)
T PRK15433 208 VIVNAARSRGVTEARLLTRYTVWAGLMAGVGLTLLYLALFRLGSDSA----SLVDQ--SANGAAILHAYVQHTFGGGGSF 281 (439)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc----ccccC--CCcHhHHHHHHHHHHhCHHHHH
Confidence 345555555542 23444557888888888777777776665211 10110 1113445667889999999999
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCC
Q 012458 113 ACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAP 177 (463)
Q Consensus 113 ~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~ 177 (463)
+..+.+.+.|+-++++-....++.+.+..+ .+++.|..+..++.++++.+.
T Consensus 282 ll~iiv~lACLTTaIGLi~a~a~~f~~~~~--------------isY~~~v~i~~l~S~~lSn~G 332 (439)
T PRK15433 282 LLAALIFIACLVTAVGLTCACAEFFAQYVP--------------LSYRTLVFILGGFSMVVSNLG 332 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--------------CcHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999998877532 457788888888888888753
No 93
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=88.32 E-value=2 Score=43.33 Aligned_cols=154 Identities=18% Similarity=0.123 Sum_probs=95.5
Q ss_pred ccchhh-hhHHHHHHHHHHHHHHhhhhhhhccCcccccccccccccCChHHHHHHHHHHHHHHHhhhhccccchHHHHHH
Q 012458 264 NQTMKK-ASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEK 342 (463)
Q Consensus 264 ~~~~~~-~~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~ 342 (463)
+++-++ .-........+-..+....++..|+.--+..--+-...++++............+...++|...++.......
T Consensus 220 ~~~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tS 299 (415)
T COG0814 220 RKNSKKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATS 299 (415)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence 445555 4444444444555577788888886644333333344444555556666666666679999999998877665
Q ss_pred HHHhhcCCCCccccccccCCCCCCCcCCchhhHHHHHHHHHHHHHHHhhCCc-hHHHHHHhhhhhhhhhHhhhhhHHHHH
Q 012458 343 WICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPY-FNQVLGVIGGVIFWPLTIYFPVEMYFK 421 (463)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~-~~~v~~l~Ga~~~~~l~filP~l~~~~ 421 (463)
.++-...-.+..++ .. + ..+.+..|.........++.+.++..|. +....+..|++...+.+-++|.+++++
T Consensus 300 Flgv~lg~~~~~~~-~~-~-----~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~ 372 (415)
T COG0814 300 FLGVYLGLFEGLAD-LF-K-----KSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIK 372 (415)
T ss_pred HhCchhhHHHhhhH-HH-H-----hccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Confidence 44332111000000 00 0 0122344555566666777777888776 788889999999999999999999998
Q ss_pred Hhc
Q 012458 422 QMN 424 (463)
Q Consensus 422 ~~~ 424 (463)
-++
T Consensus 373 p~~ 375 (415)
T COG0814 373 PRK 375 (415)
T ss_pred HHH
Confidence 754
No 94
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=86.94 E-value=37 Score=34.32 Aligned_cols=66 Identities=11% Similarity=0.055 Sum_probs=44.3
Q ss_pred chHHHHHHHHHhhccccchhhHHHHHH-HhC--hhHHHHHHHHHHHH-HHHHHHHHHHcccCCCCCCCCCccccHHHHHH
Q 012458 28 GTLWTAVAHIITGVIGSGVLSLAWSMA-QLG--WIAGPLAMVIFASV-TLFATFLLCDCHRGPDPEYGPGRNRSYLEAVD 103 (463)
Q Consensus 28 ~s~~~a~~~l~~~~iG~GiL~LP~~f~-~~G--~~~gii~li~~~~~-s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~~ 103 (463)
...+...+.+.....|+|=|=.|-..- ++| |..+.+.+++.++. -..+...+.+. + .+++|+++
T Consensus 8 ~~~l~iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgiiava~~-----------~-g~~~~l~~ 75 (439)
T PRK15433 8 RDIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALAKV-----------G-GGVDSLST 75 (439)
T ss_pred hHHHHHHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhc-----------C-CCHHHHhh
Confidence 356677888999999999999987754 555 78888888777763 22333333332 1 27777777
Q ss_pred HH
Q 012458 104 MC 105 (463)
Q Consensus 104 ~~ 105 (463)
+.
T Consensus 76 rv 77 (439)
T PRK15433 76 PI 77 (439)
T ss_pred hc
Confidence 55
No 95
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=86.22 E-value=38 Score=33.79 Aligned_cols=98 Identities=13% Similarity=0.035 Sum_probs=55.2
Q ss_pred HHHHHhhccccchhhHHHHHHHhChhHHHHHHHHHHHHHHHHHHHH-HHcccCCCCCCCCCccccHHHHHHHHcccccch
Q 012458 34 VAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLL-CDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAW 112 (463)
Q Consensus 34 ~~~l~~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~s~~t~~ll-~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~g~~ 112 (463)
.+.+..+-+|.|-++ -+.-+-+.+...+++.++.+.+..+....+ .|.... .| ++..|+.++.++|+.++
T Consensus 10 g~lva~a~idPG~i~-t~~~aGa~fGy~LLW~llls~~~~~~~Q~~aaRlg~v----Tg----~~l~~~~r~~~~~~~~~ 80 (390)
T TIGR01197 10 GFLMSIAYIDPGNYS-TDLQAGAAAGYKLLWVLLLSNIMALLLQRLCARLGVV----TG----LDLAEVCREHYPKVPRI 80 (390)
T ss_pred HHHHHHHhcCchHHH-HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHheee----cC----CCHHHHHHHHCCCchHH
Confidence 344445567777666 222222224555566666555554444433 333221 23 48999999999998877
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHhhHHHH
Q 012458 113 ACSFFVHVGLYGTAIAYTVTSAISMRAI 140 (463)
Q Consensus 113 ~~~~~~~~~~~g~~~~y~i~~~~~l~~i 140 (463)
...+...+...+.....+.-.+..++-+
T Consensus 81 ~~~~~~~l~ii~~~~~e~~G~a~al~ll 108 (390)
T TIGR01197 81 TLWILAELAIIATDMAEVIGTAIALNLL 108 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665555555555555555555555443
No 96
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=85.37 E-value=39 Score=33.12 Aligned_cols=145 Identities=12% Similarity=0.021 Sum_probs=86.4
Q ss_pred HHHHHhhcccc-chhhHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHHHc-ccccc
Q 012458 34 VAHIITGVIGS-GVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCL-GKTNA 111 (463)
Q Consensus 34 ~~~l~~~~iG~-GiL~LP~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~~~~~-G~~g~ 111 (463)
.++...+-+|+ ..++=|-+-.+-|+-. .++..+=--..+.+.-.+.+=..+..+ +++..|..|+-++=+ ++.-.
T Consensus 47 Amt~~aTYisaSSFigGpgaayk~Glgw-vlLa~iqvp~~~l~lgvlgkk~~~~ar---~~nAltI~D~l~~RY~s~fl~ 122 (473)
T COG4145 47 AMTFTATYISASSFIGGPGAAYKYGLGW-VLLAMIQVPTVWLALGVLGKKFAILAR---EYNALTINDLLFARYQSRFLV 122 (473)
T ss_pred hhHHHHHHHHHhhhcCCCcHHHHhchHH-HHHHHHHHHHHHHHHHHhhhHHHHHHH---HhCCeeHHHHHHHHhcchHHH
Confidence 33333333333 3344466666666543 222222222344444444331111111 115668888877665 45567
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCCccchhhHHHHHHH
Q 012458 112 WACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAV 191 (463)
Q Consensus 112 ~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 191 (463)
++..+.+.+...+..++..+-.+..++... +.++..-+++++..+..-..+.-.|+....-.+--+
T Consensus 123 ~las~~Lifff~~~m~~qfiGgarLlE~~~--------------gidY~tgL~ifa~~V~iYt~fGGFRAvvltD~IQG~ 188 (473)
T COG4145 123 WLASLSLIFFFVGAMTVQFIGGARLLETAL--------------GIDYTTGLLIFAVSVAIYTAFGGFRAVVLTDTIQGL 188 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--------------CCCchhhHHHHHHHHHHHHhhcceeeeehHHHHHHH
Confidence 888999999999999999999999887754 245667788888888777777777776666555544
Q ss_pred HHHHH
Q 012458 192 MSFAY 196 (463)
Q Consensus 192 ~~~~~ 196 (463)
.+++-
T Consensus 189 vmlig 193 (473)
T COG4145 189 VMLIG 193 (473)
T ss_pred HHHHH
Confidence 44433
No 97
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=84.30 E-value=49 Score=33.32 Aligned_cols=110 Identities=15% Similarity=0.140 Sum_probs=59.1
Q ss_pred cchHHHHHHHHHhhccccc-hhhHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHHH
Q 012458 27 TGTLWTAVAHIITGVIGSG-VLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMC 105 (463)
Q Consensus 27 ~~s~~~a~~~l~~~~iG~G-iL~LP~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~~~~ 105 (463)
-.|...=++....+.+|.| +.-.||...+-|=.. .++.-++..+..=--.++.|..--. +.+++...+|+.+..
T Consensus 8 w~SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGgA-Fll~yli~~l~~GiPlli~Ef~iGr--~~~~~~~~a~~~l~~-- 82 (439)
T COG0733 8 WSSRLGFILAAAGSAVGLGNIWRFPYMAGENGGGA-FLLPYLIFLLLVGIPLLLAEFAIGR--RGRKNAVGAFRKLAP-- 82 (439)
T ss_pred hhhHHHHHHHHHHHHhcccccccCCeEeeecCcch-HHHHHHHHHHHHhHHHHHHHHHhhh--hcCCChhHHHHHhcc--
Confidence 4566666778888999987 456799887776532 2222222222222223444433111 111114557776665
Q ss_pred cccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhh
Q 012458 106 LGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKS 143 (463)
Q Consensus 106 ~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~ 143 (463)
+|+++++ .....+..+..+.-|.++.+=.+..+...
T Consensus 83 -~~~~~~~-G~~gv~~~~~i~sfYsvI~GWil~Y~~~s 118 (439)
T COG0733 83 -KKKWEWI-GWFGVLGGFLILSFYSVIGGWILSYLVKS 118 (439)
T ss_pred -Cccchhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444433 33335555666677777777776665543
No 98
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=83.75 E-value=24 Score=36.84 Aligned_cols=243 Identities=13% Similarity=0.072 Sum_probs=117.5
Q ss_pred cccchHHHHHHHHHhhcccc-chhhHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHH
Q 012458 25 KRTGTLWTAVAHIITGVIGS-GVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVD 103 (463)
Q Consensus 25 ~~~~s~~~a~~~l~~~~iG~-GiL~LP~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~~ 103 (463)
.|+..++...+.+..+.+|. -++++|.-..+.|.-.......... . .+..++...+-..+. +..+-.|--+
T Consensus 44 gr~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~~G~~~~~~~~~~l~-----~--~~~~~~~f~Pvf~~~-~v~~~~eYl~ 115 (585)
T KOG2349|consen 44 GRSMVWLPVAASLFASNISSVHFLGLPGEGYAYGIQYWFFEWNALL-----S--VLLLGWIFIPVFYRL-GVTTMYEYLE 115 (585)
T ss_pred CCcceEEEeehhhhhhhhcceeeecCchHHHHHHHHHHHHHHHHHH-----H--HHhhheEEEEEEEec-CeeehhHHHH
Confidence 34555666667777776666 5788998888888653222211111 1 111222111111111 5667777778
Q ss_pred HHcccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCCccchh
Q 012458 104 MCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQ 183 (463)
Q Consensus 104 ~~~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~ 183 (463)
+-||++.+.+..+...+..+--.-.+.-.-+-.+++... +......++..+++..-....-+++.-
T Consensus 116 ~Rf~~~~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvtg--------------~~~~l~~~~~~~ic~~YT~~GGlkaVi 181 (585)
T KOG2349|consen 116 KRFGGRVRYLATLSFILMIFLYLPVDMYAPALAINQVTG--------------INLYLIVVILGLICVFYTALGGLKAVI 181 (585)
T ss_pred HHhcccchhhHHHHHHHHHHhheeeeEeehHHHHHHHhc--------------cCceeehHHHHHHHHHHHHhcCeeEEE
Confidence 888888666665555554444333333322333333221 111122333444444555666667777
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCC------cccccc--c-c-CCCCchhHHHHHHHH-HHHHHHhhcccceeehh
Q 012458 184 SLSVIAAVMSFAYSFIGFGLGVAKVIGNG------FVMGSF--S-G-VSTTTSIEKMWLVAQ-ALGDIAFAYPYSLILIE 252 (463)
Q Consensus 184 ~~s~~~~~~~~~~~~i~~~~~~~~~~~~~------~~~~~~--~-~-~~~~~~~~~~~~~~~-~~~~~~faf~~~~~~~~ 252 (463)
|.-.+-.+..+.-...+.+....+...-+ ..++.. . + ..|++..+.+|.++. ....-.--|+.+.+.
T Consensus 182 ~TDv~Q~~iml~~~~~v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~dp~vr~t~W~~~~Gg~~~~l~~~~vnQ~~-- 259 (585)
T KOG2349|consen 182 WTDVVQTVIMLGGVLAVMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLRDPTVRHTPWSLLFGGTIMWLSYYGVNQLI-- 259 (585)
T ss_pred EhhHHHHHHHHHHHHHHhheeehhcCcccceeeecccCCceeecccccCCCcccccchhHhcCCcHHHHHHHhhhHHH--
Confidence 77666666655433333222221111100 111111 1 0 112233344555443 333334445555554
Q ss_pred hhhhcCCCCccccchhhhhHHHHHHHHHHHHHHhhhhhhhc
Q 012458 253 IQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAF 293 (463)
Q Consensus 253 i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~f 293 (463)
+||-+.-| +.|+.++.+......-++........|...|
T Consensus 260 VQR~lsl~--slk~ak~~~~~~~~~~~l~~~~~~~~G~i~~ 298 (585)
T KOG2349|consen 260 VQRYLSLP--SLKHAKPSLLLFGYGVLLIMFIMVFVGMIIY 298 (585)
T ss_pred HhHHhccc--cHHHhhhhhhhhhhHHHHHHHhhcccceeEe
Confidence 45555533 4588888888877777766665555554433
No 99
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=79.56 E-value=82 Score=32.73 Aligned_cols=263 Identities=16% Similarity=0.186 Sum_probs=117.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHHHc--ccccchhhHHHHHHHHHhHHHHHHHHHHhh
Q 012458 59 IAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCL--GKTNAWACSFFVHVGLYGTAIAYTVTSAIS 136 (463)
Q Consensus 59 ~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~~~~~--G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~ 136 (463)
+.|++.+++.++.-..+...+.-..+..+. |+......-.+.++.. +|+.+++ ...+..+|++..| +|.
T Consensus 36 vlG~lSlIfWtL~liv~iKYv~ivlradn~--GEGGi~aL~sL~~~~~~~~~~~~~~---l~~l~l~G~al~~----gDg 106 (534)
T PF02705_consen 36 VLGVLSLIFWTLTLIVTIKYVLIVLRADNN--GEGGIFALYSLIRRFLKSSKRRRWL---LLILGLLGAALFY----GDG 106 (534)
T ss_pred HHHHHHHHHHHHHHHHHHheEEEEEEeCCC--CChhHHHHHHHHHHhhccchhHHHH---HHHHHHHHhhhhh----cce
Confidence 568888888777777777666656665433 3324555555555333 2333333 4455555655443 221
Q ss_pred H--HHHHhhcccccCCCC-cccccccchhHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 012458 137 M--RAIQKSNCYHREGHE-AACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGF 213 (463)
Q Consensus 137 l--~~i~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~ 213 (463)
+ +.+-.. +.-||-+ ..+..+. +.+-+..++++.|-.+++...=+.-..++-+..+++..+. ...+++..++..
T Consensus 107 viTPAISVl--SAvEGl~v~~p~~~~-~Vv~it~~ILv~LF~iQ~~GT~~ig~~FgPim~~WF~~l~-~~G~~~I~~~p~ 182 (534)
T PF02705_consen 107 VITPAISVL--SAVEGLEVATPSLEP-YVVPITIAILVGLFAIQRFGTAKIGKLFGPIMLLWFLTLG-VLGLYNIIQHPE 182 (534)
T ss_pred eecchHHHH--HHhhhhhccCCCCcc-eehhHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHHHHH-HHHHHHHhhCHH
Confidence 1 110000 0111111 1112332 2233344444444444444333444557777776665544 355666555421
Q ss_pred cccccccCCCCchhHH----HHHHHHHHHHHHhhcccceeehhhhhhcCCCCccccchhhhhHHHHHHHHHHHHHHhhhh
Q 012458 214 VMGSFSGVSTTTSIEK----MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFG 289 (463)
Q Consensus 214 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~g 289 (463)
-...+++...... .+.-+..+|..+.|..+.- -++.+|-|- .++..+ ..+..+....++--=+|-..
T Consensus 183 ---Vl~A~nP~yai~f~~~~~~~~~~~LG~V~L~~TGaE---ALyADmGHf--g~~~Ir-~aw~~~V~PaL~LnY~GQgA 253 (534)
T PF02705_consen 183 ---VLKALNPYYAIRFFIRNGWIGFFVLGAVFLCVTGAE---ALYADMGHF--GRKPIR-IAWFFLVFPALLLNYFGQGA 253 (534)
T ss_pred ---HHHHhCHHHHHHHHHHcCCchhhhcchHHHHHhhHH---HHHhhhccc--cchhhh-hhHHHHHHHHHHHHHccHHH
Confidence 1111211111111 1123456666666666555 456688764 123333 33333222222222233333
Q ss_pred hhhccCcccccccccccccCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHh
Q 012458 290 YAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICE 346 (463)
Q Consensus 290 y~~fg~~~~~~il~n~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~ 346 (463)
|+.=..+...|..-..- ++|+....-++..++.+.+-.-.+...+....+..+.
T Consensus 254 ~ll~~p~~~~npFf~~~---P~~~~~p~~ilAtlAtIIASQA~Isg~FSl~~Qai~L 307 (534)
T PF02705_consen 254 LLLSHPEAVSNPFFLLI---PEWLLWPMVILATLATIIASQAVISGAFSLTRQAIQL 307 (534)
T ss_pred HHHcCcchhhhHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44333322233333332 4566555555555555555555555555555554443
No 100
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=78.49 E-value=79 Score=31.90 Aligned_cols=145 Identities=18% Similarity=0.094 Sum_probs=75.6
Q ss_pred ccccchHHHHHHHHHhhccccchhh-HHHHHHHhChhHHHHHHHHHHHHHHHH---HHHHHHcccCCCCCCCCCccccHH
Q 012458 24 IKRTGTLWTAVAHIITGVIGSGVLS-LAWSMAQLGWIAGPLAMVIFASVTLFA---TFLLCDCHRGPDPEYGPGRNRSYL 99 (463)
Q Consensus 24 ~~~~~s~~~a~~~l~~~~iG~GiL~-LP~~f~~~G~~~gii~li~~~~~s~~t---~~ll~~~~~~~~~~~~~~~~~~y~ 99 (463)
+++..|.+|+.+.-+.+.+|+|=++ ..-+.+-.|- .++.++=+.+++..-| =..|..-.|..++ .|+.+ ---.
T Consensus 59 ~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GGP-GAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~-~G~~~-GGP~ 135 (452)
T COG1115 59 GKGGVSSFQALMTSLAARVGTGNIAGVATAIALGGP-GAVFWMWIVALFGMATKFAESTLAQKYRVKDK-DGEYR-GGPA 135 (452)
T ss_pred CCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCCC-ccHHHHHHHHHHHHHHHHHHHHHHhheeEeCC-CCCCc-CChH
Confidence 3455689999999999999998665 7777775554 4677666666554444 3445444443222 12100 0111
Q ss_pred HHHHHHcccc-cchhhHHHHHHHHHh--HHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcC
Q 012458 100 EAVDMCLGKT-NAWACSFFVHVGLYG--TAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQA 176 (463)
Q Consensus 100 ~l~~~~~G~~-g~~~~~~~~~~~~~g--~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~ 176 (463)
=--++-+|.+ ...+.. ...+..|| .+......+++.+++-+. ++. +..-+...++.-+..+
T Consensus 136 yYi~kGl~~r~l~v~FA-~~li~afg~i~n~vQ~NsIa~a~~~af~--------------~~~-~~~gi~la~l~~~VI~ 199 (452)
T COG1115 136 YYIEKGLGMRWLAVLFA-FALIAAFGFIGNGVQSNSIASALANAFG--------------IPP-LVTGIVLALLVALVIF 199 (452)
T ss_pred HHHHhhcCCcHHHHHHH-HHHHHHHHhhcchhhHHHHHHHHHHhcC--------------CcH-HHHHHHHHHHHHHHHH
Confidence 1223444433 233333 33344444 566666666666655321 111 2233333444444555
Q ss_pred CCccchhhHHH
Q 012458 177 PDFHNIQSLSV 187 (463)
Q Consensus 177 ~~l~~l~~~s~ 187 (463)
+-+++...++-
T Consensus 200 GGi~rIa~v~~ 210 (452)
T COG1115 200 GGIKRIAKVSS 210 (452)
T ss_pred cchHHHHHHHH
Confidence 55666555544
No 101
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=74.25 E-value=1.2e+02 Score=32.02 Aligned_cols=281 Identities=14% Similarity=0.130 Sum_probs=127.5
Q ss_pred hccccchhh-HHHHHHH-------hChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHHHcccccc
Q 012458 40 GVIGSGVLS-LAWSMAQ-------LGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNA 111 (463)
Q Consensus 40 ~~iG~GiL~-LP~~f~~-------~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~g~ 111 (463)
.=+|+..|- +.-+|.. -.-+.|++.+++.++.-.-|...+.-..+..+..+| .....-.+.++.-.++.+
T Consensus 22 GDIGTSPLY~~~~~f~~~~~~~~~~~~vlGvlSLIfWtL~livtiKYv~ivlrADn~GEG--Gi~AL~aL~~~~~~~~~~ 99 (622)
T PRK10745 22 GDIGTSPLYTLRECLSGQFGFGVERDAVFGFLSLIFWLLILVVSIKYLTFVMRADNAGEG--GILTLMSLAGRNTSARTT 99 (622)
T ss_pred cCCCCChHHHHHHHhccCCCCCCChhHeehhhHHHHHHHHHHHHHHhheEEEecCCCCCc--hHHHHHHHHhhhcccchh
Confidence 345666654 4444522 113568999999988888888888777765444333 444545555433323333
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHhhH--HHHHhhcccccCCCC-cccccccchhHHHHHHHHHHhhcCCCccchhhHHHH
Q 012458 112 WACSFFVHVGLYGTAIAYTVTSAISM--RAIQKSNCYHREGHE-AACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVI 188 (463)
Q Consensus 112 ~~~~~~~~~~~~g~~~~y~i~~~~~l--~~i~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~ 188 (463)
. ....+..+|.+..| +|.+ +.+-.. +.-||.+ ..+..+. +.+-+..++++.|-.+++...=+.-..+
T Consensus 100 ~---~l~~lgl~Gaal~~----gDgvITPAISVL--SAVEGL~v~~p~l~~-~Vvpit~~ILv~LF~iQ~~GT~~vG~~F 169 (622)
T PRK10745 100 S---MLVIMGLIGGSFFY----GEVVITPAISVM--SAIEGLEIVAPQLDT-YIVPLSIIVLTLLFMIQKHGTGMVGKLF 169 (622)
T ss_pred H---HHHHHHHHHHHHHh----hccccchhHHHH--HHhhcccccCCCCCC-ccHHHHHHHHHHHHHHhccccHHHhhhh
Confidence 2 34556666666544 2211 111100 1112211 1112322 2333444444444444445554566667
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCchhHHH----HHHHHHHHHHHhhcccceeehhhhhhcCCCCccc
Q 012458 189 AAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKM----WLVAQALGDIAFAYPYSLILIEIQDTLKSPPPAN 264 (463)
Q Consensus 189 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~ 264 (463)
+-+..+++..+. +..+++..++. .-...+++....... +.-+..+|-.+.|-.+.- .++.+|-|- .+
T Consensus 170 gPIm~vWF~~i~-~~Gi~~I~~~P---~Vl~AlnP~ya~~f~~~~~~~gf~~LG~V~L~vTGaE---ALYADmGHF--G~ 240 (622)
T PRK10745 170 APIMLTWFLTLA-VLGLRSIIANP---EVLHALNPMWAVHFFLEYKTVSFFALGAVVLAITGVE---ALYADMGHF--GK 240 (622)
T ss_pred hhHHHHHHHHHH-HHHHHHHhcCH---HHHhHhCHHHHHHHHHhCCCceEEEecceeeeccchH---HHhhccCCC--Cc
Confidence 777776665544 34556555431 111111111110000 111223444444444433 567788764 12
Q ss_pred cchhhhhHHHHHHHHHHHHHHhhhhhhhccCcc-cccccccccccCChHHHHHHHHHHHHHHHhhhhccccchHHHHHHH
Q 012458 265 QTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT-PGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKW 343 (463)
Q Consensus 265 ~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~~-~~~il~n~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~ 343 (463)
+.. +..+..+....++--=+|-..|+.=.++. +.+..... ++|+....-++..++.+.+-.-.+...+....+.
T Consensus 241 ~~I-r~aW~~~v~P~L~LnY~GQgA~ll~~p~~~~NpFf~~~----P~~~~~p~viLATlAtIIASQAvISGaFSl~~QA 315 (622)
T PRK10745 241 FPI-RLAWFTVVLPSLVLNYFGQGALLLKNPEAIKNPFFLLA----PDWALIPLLILATLATVIASQAVISGVFSLTRQA 315 (622)
T ss_pred cce-eeeehhhHHHHHHHHhcchHHHHhcCchhhcCcHHHhC----ChhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 222 33333333322222223333344322222 22333333 4566555555555555555555555555555555
Q ss_pred HHh
Q 012458 344 ICE 346 (463)
Q Consensus 344 ~~~ 346 (463)
.+-
T Consensus 316 i~L 318 (622)
T PRK10745 316 VRL 318 (622)
T ss_pred HHh
Confidence 443
No 102
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=70.91 E-value=1.4e+02 Score=31.16 Aligned_cols=30 Identities=13% Similarity=0.185 Sum_probs=22.0
Q ss_pred chHHHHHHHHHhhccccc-hhhHHHHHHHhC
Q 012458 28 GTLWTAVAHIITGVIGSG-VLSLAWSMAQLG 57 (463)
Q Consensus 28 ~s~~~a~~~l~~~~iG~G-iL~LP~~f~~~G 57 (463)
.|..+-.+..+...+|.| +.-.|+-..+-|
T Consensus 5 ~~~~~~~l~~~g~~vglgn~wrfp~~~~~~g 35 (523)
T PF00209_consen 5 SSKIGFILACIGYAVGLGNIWRFPYLCYENG 35 (523)
T ss_dssp S-HHHHHHHHHHHHSSHHHHTHHHHHHHHTT
T ss_pred ccccccccccccccccccccccccccccccc
Confidence 345566777888999998 778999866554
No 103
>PLN00151 potassium transporter; Provisional
Probab=70.22 E-value=1.7e+02 Score=32.03 Aligned_cols=174 Identities=10% Similarity=0.081 Sum_probs=77.4
Q ss_pred cchhHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCchhHHH----HHHH
Q 012458 159 DTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKM----WLVA 234 (463)
Q Consensus 159 ~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 234 (463)
..+.+.+..++++.|-.+++...=+.-..++-+..+++..+. +..+|+..+.++. -+..+++......+ .+-+
T Consensus 271 ~~~VV~Is~~ILv~LF~~Q~~GT~kVg~~FgPImllWFl~i~-~iGiynI~~~~p~--Vl~AlnP~Y~~~Ff~~~~~~gw 347 (852)
T PLN00151 271 QDAVVMISVAFLVILFSVQRFGTSKVGFAFGPALALWFCSLG-GIGIYNLVKYDSS--VFRAFNPVYIYYFFKRNSTKAW 347 (852)
T ss_pred CCeehhHHHHHHHHHHHHHhccchhhhhhhccHHHHHHHHHH-HHHHHHHHhcCHH--HHhhhCHHHHHHHHHhCCCceE
Confidence 333344555555555455555444555556777666554443 4567777765321 11122211111001 0122
Q ss_pred HHHHHHHhhcccceeehhhhhhcCCCCccccchhhhhHHHHHHHHHHHHHHhhhhhhhccC-cccccccccccccCChHH
Q 012458 235 QALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGD-NTPGNLLTGFGFYEPYWL 313 (463)
Q Consensus 235 ~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~-~~~~~il~n~~~~~~~~~ 313 (463)
..+|-++.|..+.- .++.+|-|-. ++--+..+..+....++..=+|-..|+.=.. +....+..+.| +++
T Consensus 348 ~~LGgVvLciTGaE---ALfADLGHFg---~~sIqiaw~~~V~P~LlL~Y~GQaA~L~~~p~~~~npFy~svP----~~~ 417 (852)
T PLN00151 348 SALGGCVLCATGSE---AMFADLGYFS---VRSIQLAFTCLVLPCLLLAYMGQAAYLMKNPDSAEQIFFSSVP----SSL 417 (852)
T ss_pred EEecceeeeeccch---hhhcccCCCC---ccceeeeehhhHHHHHHHHHcchHHHHhcCcccccCcHHHhCC----chh
Confidence 34566666666555 4556777641 2222333333344333333344444554322 22333444443 444
Q ss_pred HHHHHHHHHHHHHhhhhccccchHHHHHHHHH
Q 012458 314 IDLANAFIVIHLVGGYQVYSQPIFAHFEKWIC 345 (463)
Q Consensus 314 ~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~ 345 (463)
....-+...++.+.+-.-++...+..+.+...
T Consensus 418 ~wP~~vlAtlAaIIASQA~ISgtFSii~Qai~ 449 (852)
T PLN00151 418 FWPVFLIANLAALIASRAMTTATFSCIKQSMA 449 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444443
No 104
>PRK09928 choline transport protein BetT; Provisional
Probab=57.40 E-value=1.4e+02 Score=32.05 Aligned_cols=87 Identities=16% Similarity=0.130 Sum_probs=57.2
Q ss_pred HhHHHHHHHHHHhhHHHHHhhcccccC-CCCcccccccchhHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHH
Q 012458 123 YGTAIAYTVTSAISMRAIQKSNCYHRE-GHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGF 201 (463)
Q Consensus 123 ~g~~~~y~i~~~~~l~~i~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~ 201 (463)
...+..+++..+|+-..++...+.+.. +..++..+.+-+|.++.+++.+-+.....++.++..+.++.+=. .++.+.+
T Consensus 416 ~il~~iFfvTSaDS~s~Vla~lts~g~~~~~~pp~~~RifW~v~ig~la~~LL~~GGL~aLQt~sii~alPf-~~I~ll~ 494 (679)
T PRK09928 416 TITGLLFYVTSADSGALVLGNFTSKLKDINSDAPNWLRVFWSVAIGLLTLGMLMTNGISALQNTTVIMGLPF-SFVIFFV 494 (679)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHcCCCCCCCCCCcceeeHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HHHHHHH
Confidence 344566888888888888877665432 22345567888999888888877777777888887776554432 2223333
Q ss_pred HHHHHHHhc
Q 012458 202 GLGVAKVIG 210 (463)
Q Consensus 202 ~~~~~~~~~ 210 (463)
..++.+...
T Consensus 495 ~~sl~k~l~ 503 (679)
T PRK09928 495 MAGLYKSLK 503 (679)
T ss_pred HHHHHHHHH
Confidence 455666554
No 105
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=54.92 E-value=1.6e+02 Score=30.48 Aligned_cols=83 Identities=19% Similarity=0.217 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHHH
Q 012458 124 GTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGL 203 (463)
Q Consensus 124 g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~ 203 (463)
-.+..+++...|+........+.+. ++++..+.+..|.++.+.+-+-+.....++.++.++.++.+=.. +..+....
T Consensus 400 il~~~f~vTs~DS~~~~la~~s~~~--~~ep~~~~ri~W~~~~~~~a~~ll~~ggl~~lq~~~ii~~lP~~-~v~~~~~~ 476 (485)
T PF02028_consen 400 ILIFIFFVTSADSATYVLAMLSSKG--DEEPPRWLRIFWGLIIGALAIVLLLIGGLDALQSASIIGGLPFS-FVMLLMCI 476 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTT--TSSS-HHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHhcccHHHHHHHHHHcCC--CCCCchHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3455677777777777776654443 33455667888888888777777777778888888776655432 22333345
Q ss_pred HHHHHh
Q 012458 204 GVAKVI 209 (463)
Q Consensus 204 ~~~~~~ 209 (463)
++.|..
T Consensus 477 ~~~k~l 482 (485)
T PF02028_consen 477 SFIKAL 482 (485)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
No 106
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=53.32 E-value=1.1e+02 Score=31.14 Aligned_cols=70 Identities=19% Similarity=0.235 Sum_probs=44.6
Q ss_pred HhHHHHHHHHHHhhHHHHHhhccccc-CCCCcccccccchhHHHHHHHHHHhhcCCC-ccchhhHHHHHHHH
Q 012458 123 YGTAIAYTVTSAISMRAIQKSNCYHR-EGHEAACEYSDTYYMLIFGAVQLILSQAPD-FHNIQSLSVIAAVM 192 (463)
Q Consensus 123 ~g~~~~y~i~~~~~l~~i~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~-l~~l~~~s~~~~~~ 192 (463)
...+..|++...|+-.......+.++ +..+++..+.+-.|.++.+.+..-+..... ++.++.++.++.+=
T Consensus 363 ~il~~if~vTs~DS~s~vla~~~s~~g~~~~ep~~~~ri~W~v~ig~~a~~ll~~gG~l~~lQ~~~ii~alP 434 (453)
T TIGR00842 363 LIVIIIFFITSADSGALVLANTSSRGGQLGEEPPKWVRVFWAVAIGLIALVLLFSGGSLAALQTTAIIAALP 434 (453)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHhcCCCCCCCCCcccchHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 34455677778888777776554422 222245567788888887777666666665 77777766655443
No 107
>PRK09950 putative transporter; Provisional
Probab=52.09 E-value=1.2e+02 Score=31.43 Aligned_cols=88 Identities=7% Similarity=0.085 Sum_probs=53.3
Q ss_pred HhHHHHHHHHHHhhHHHHHhhcccccC-CCCcccccccchhHHHHHHHHHHhhcCCC-ccchhhHHHHHHHHHHHHHHHH
Q 012458 123 YGTAIAYTVTSAISMRAIQKSNCYHRE-GHEAACEYSDTYYMLIFGAVQLILSQAPD-FHNIQSLSVIAAVMSFAYSFIG 200 (463)
Q Consensus 123 ~g~~~~y~i~~~~~l~~i~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~pl~~~~~-l~~l~~~s~~~~~~~~~~~~i~ 200 (463)
...+..+++...|+-.......+.+.. +++++..+.|-.|.+..+.+-.-+..... ++.++..+.++.+=.. +..+.
T Consensus 409 ~vl~~if~vTs~DS~s~vla~~ts~g~~~~~~P~~~~ri~W~i~~g~ia~~Ll~~gG~l~~lQ~~~ii~alP~~-~i~~l 487 (506)
T PRK09950 409 LGIMIIFLASHMDAVAYTMAATSTRNLREGDDPDRGLRLFWCVVITLIPLSILFTGASLDTMKTTVVLTALPFL-VILLI 487 (506)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCCCCcchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH-HHHHH
Confidence 345566788888888777776655432 22345556777888887777666666665 7777777665544322 22333
Q ss_pred HHHHHHHHhcC
Q 012458 201 FGLGVAKVIGN 211 (463)
Q Consensus 201 ~~~~~~~~~~~ 211 (463)
...++.|..+.
T Consensus 488 ~~~s~~k~l~~ 498 (506)
T PRK09950 488 KVYGFIRWLKQ 498 (506)
T ss_pred HHHHHHHHHhh
Confidence 34555665543
No 108
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=51.66 E-value=2.9e+02 Score=28.41 Aligned_cols=263 Identities=13% Similarity=0.147 Sum_probs=122.1
Q ss_pred ccccchHHHHHHHHHhhccccchhhHHHHHHHhC--hhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHH
Q 012458 24 IKRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLG--WIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEA 101 (463)
Q Consensus 24 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~~f~~~G--~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l 101 (463)
++|+=|+++-+..=....++++.--+..+--+.| |..+++.+.+ -|....+.-.. +.+.|.+=+.+++-.
T Consensus 52 ~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~v-----G~~~~~~f~~l---ns~~G~~yhIsFpv~ 123 (572)
T KOG2466|consen 52 SRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWV-----GYLFTAIFLVL---NSRPGSDYHISFPVL 123 (572)
T ss_pred ccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHH-----HHHHHHHHHHH---ccCCCcccccceeee
Confidence 3455577776666666666666666666666777 3444433322 22222222211 112344345688888
Q ss_pred HHHHcccccc---hhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhccc---ccCCCCcccccccchhH--HHHHHHHHHh
Q 012458 102 VDMCLGKTNA---WACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCY---HREGHEAACEYSDTYYM--LIFGAVQLIL 173 (463)
Q Consensus 102 ~~~~~G~~g~---~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~---~~~~~~~~~~~~~~~~~--~i~~~~~~pl 173 (463)
.+..||-+|. ++..+.+.+..||... =+.++-++-+++...- |-.........+...++ +++-++.+|.
T Consensus 124 sR~sFGiygS~~pIi~R~vma~vwYg~~a---wiGgecV~lmL~si~~~~~hipntl~~~~~tt~e~i~FfIFwv~s~~~ 200 (572)
T KOG2466|consen 124 SRSSFGIYGSLWPIINRVVMACVWYGVNA---WIGGECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFFIFWVASLPF 200 (572)
T ss_pred eeeehhhhHhHHHHHHHHHHHHhhhhhhh---hhhhhhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHHHHHHHhhhe
Confidence 8888877654 5566666666666432 2233333333322111 10000111123333333 4566667777
Q ss_pred hcCC--CccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccc-CCCCchhHHHHHHHHHHHHHHhhcc-ccee
Q 012458 174 SQAP--DFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSG-VSTTTSIEKMWLVAQALGDIAFAYP-YSLI 249 (463)
Q Consensus 174 ~~~~--~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~faf~-~~~~ 249 (463)
.+.| +++.+-..+.+.+... ++..++....+. ++ -+++.+ -...+.....|.++.++.-++=.|. ...|
T Consensus 201 ~~~~p~~ir~lf~~ka~~t~fA---~~g~LIw~l~kA--hG--~G~l~~~~st~~gs~~aWa~~~~i~~~~~~fstl~~N 273 (572)
T KOG2466|consen 201 YWFPPYKIRHLFTWKAVLTPFA---AFGFLIWLLKKA--HG--LGHLFDSKSTVSGSAHAWAFVRSIMSCIANFSTLIVN 273 (572)
T ss_pred eeccHHHhhhHHHHHHhhhHHH---HHHHHHHHHHhc--CC--ccccccCCCcccccchhHHHHHHHHHHHhccchhhcc
Confidence 7665 3444444444333332 222222222221 11 112211 1112233344555554444433343 5567
Q ss_pred ehhhhhhcCCCCccccchhhhh--HHHHHHHHHHHHHHhhhhhhhccCcccc--ccccccc
Q 012458 250 LIEIQDTLKSPPPANQTMKKAS--TMSIITTTIFYLFCGGFGYAAFGDNTPG--NLLTGFG 306 (463)
Q Consensus 250 ~~~i~~~m~~p~~~~~~~~~~~--~~a~~~~~~~y~~~g~~gy~~fg~~~~~--~il~n~~ 306 (463)
.|...|=-|+| .+.-+..++ -+.+.+..++=.+.+..++-.||.+--+ +++.++-
T Consensus 274 ~pDFsRF~ksp--~a~~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pldil~~~l 332 (572)
T KOG2466|consen 274 APDFSRFAKSP--NAIWWGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPLDILNQWL 332 (572)
T ss_pred CchhHhhcCCC--CccchhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHHHHHHHHh
Confidence 77877777765 222333322 2223333333345556688889987533 4455543
No 109
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=49.75 E-value=12 Score=28.15 Aligned_cols=8 Identities=38% Similarity=0.513 Sum_probs=6.1
Q ss_pred CcccccCC
Q 012458 1 MVLSSADK 8 (463)
Q Consensus 1 ~~~s~~~~ 8 (463)
|+||++++
T Consensus 1 M~LSe~E~ 8 (82)
T PF11239_consen 1 MPLSEHEQ 8 (82)
T ss_pred CCCCHHHH
Confidence 77888775
No 110
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=49.44 E-value=38 Score=30.75 Aligned_cols=78 Identities=9% Similarity=0.163 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhhCCchHHHHH---------HhhhhhhhhhHhhhhhHHHHHHhccch-----hhHHHHHHHHHHHHHHHH
Q 012458 380 VYVVSVTAIAMSFPYFNQVLG---------VIGGVIFWPLTIYFPVEMYFKQMNIEA-----WTRKWVMLRVFSYVCFIV 445 (463)
Q Consensus 380 ~~~~~~~~ia~~vp~~~~v~~---------l~Ga~~~~~l~filP~l~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~ 445 (463)
..++.++++|..++.++-++. =-||.+|..+.++= |+...|... ....+|.-|++.++|.++
T Consensus 161 ~~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd~f~~y~n~q~wLwwi~~vlG~ll 236 (262)
T KOG4812|consen 161 GIFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSDDFESYFNGQYWLWWIFLVLGLLL 236 (262)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeecccccccccccchHHHHHHHHHHHHH
Confidence 344556666666666665544 34888887777664 332222211 112344567888899999
Q ss_pred HHHHH--HHHHHHHHHhh
Q 012458 446 STFGL--VGSIQGIISAK 461 (463)
Q Consensus 446 ~v~g~--~~si~~~~~~~ 461 (463)
.+-|+ |..++.+-+++
T Consensus 237 ~lr~~i~YikVrrm~~~~ 254 (262)
T KOG4812|consen 237 FLRGFINYIKVRRMEEKY 254 (262)
T ss_pred HHHHHHhHHHHhhHHHHH
Confidence 98888 45666665544
No 111
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=44.68 E-value=1.8e+02 Score=30.16 Aligned_cols=87 Identities=15% Similarity=0.193 Sum_probs=56.1
Q ss_pred HhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHH
Q 012458 123 YGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFG 202 (463)
Q Consensus 123 ~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~ 202 (463)
...+..+.+...|+...++....... .++++.+-+..|.++.+++-..+.....++.++-.+.+... -+..+.+++.
T Consensus 412 ~~~i~~FfiTsaDS~s~vl~~~ss~~--~~~pp~~~r~~W~v~~~~ia~~lL~~ggl~aLqt~~ii~al-PF~~vll~~~ 488 (537)
T COG1292 412 LLVIAIFFVTSADSGSYVLAMISSRG--GEDPPRWVRVFWGVLIGLIAAVLLLIGGLEALQTAAIITAL-PFSLVLLVMM 488 (537)
T ss_pred HHHHHHHHhhccchHHHHHHHHhccC--CCCChHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHc-cHHHHHHHHH
Confidence 44566778888888888777643332 33455667888888888877777777777887777654432 2333344555
Q ss_pred HHHHHHhcCC
Q 012458 203 LGVAKVIGNG 212 (463)
Q Consensus 203 ~~~~~~~~~~ 212 (463)
.++++..+.+
T Consensus 489 ~sl~k~l~~d 498 (537)
T COG1292 489 FSLIKDLKQD 498 (537)
T ss_pred HHHHHHHHhh
Confidence 6777776543
No 112
>PLN02680 carbon-monoxide oxygenase
Probab=43.52 E-value=2.6e+02 Score=25.61 Aligned_cols=68 Identities=13% Similarity=0.185 Sum_probs=51.2
Q ss_pred cchhhhhHHHHHHHHHHHHHHhhhhhhhccCcccccccccccccCChHHHHHHHHHHHHHHHhhhhccccch
Q 012458 265 QTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPI 336 (463)
Q Consensus 265 ~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~ 336 (463)
|+.+|.+-...-...++..++|+.. .|..+.+.++ .|+.+ -..|+....-+++.+|.+..+..+.+|-
T Consensus 76 k~~~K~iH~~L~~lA~~l~vvGl~a--vfk~hn~~~~-~nfyS-lHSWlGl~t~iL~~lQ~~~Gf~~f~~P~ 143 (232)
T PLN02680 76 KNLKKLVHLTLQFLAFCLSLIGVWA--ALKFHNEKGI-DNFYS-LHSWLGLACLFLFSLQWAAGFVTFWYPG 143 (232)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHH--HHHhccccCc-ccccc-HHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 7788999999999999999999955 4544444444 33331 3688999999999999999998877773
No 113
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=43.45 E-value=4.6e+02 Score=28.38 Aligned_cols=174 Identities=10% Similarity=0.121 Sum_probs=81.4
Q ss_pred chhHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCchhHHH----HHHHH
Q 012458 160 TYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKM----WLVAQ 235 (463)
Q Consensus 160 ~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 235 (463)
.+.+.+..++++.|-.+++...=+.-..++-+..+++..+. +..+++..+.++. -+..+++....... +.-+.
T Consensus 166 ~~Vv~it~~ILv~LF~iQ~~GT~kvg~~FgPim~vWF~~l~-~~Gi~~I~~~~P~--Vl~AlnP~ya~~f~~~~~~~~~~ 242 (688)
T TIGR00794 166 TWVVPISCIILVLLFLIQRFGTAKVGFTFAPIILVWLLLLA-GIGIYNIVKFNPE--VLKALSPYYAVQFFIEYGTVGWV 242 (688)
T ss_pred CeehhHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHH-HHHHHHHHhcCHH--HHhHhCHHHHHHHHHHCCCceee
Confidence 33344555555555555555555666667777776655543 3556666652211 11112211111101 12234
Q ss_pred HHHHHHhhcccceeehhhhhhcCCCCccccchhhhhHHHHHHHHHHHHHHhhhhhhhccCc-ccccccccccccCChHHH
Q 012458 236 ALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDN-TPGNLLTGFGFYEPYWLI 314 (463)
Q Consensus 236 ~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~-~~~~il~n~~~~~~~~~~ 314 (463)
.+|-.+.|..+.- -++.+|-|- .++.. +..+..+....++--=+|-..|+.=.++ .+.+..... ++|+.
T Consensus 243 ~LG~V~L~iTGaE---ALyADmGHF--g~~~I-r~aw~~~V~P~L~LnY~GQgA~ll~~p~~~~NpFf~~~----P~~~~ 312 (688)
T TIGR00794 243 SLGGVVLSITGVE---AMFADLGHF--GKLPI-QLAWFTFVYPSLILCYIGQAAYLSKHPEAIKNPFFLSI----PDWAL 312 (688)
T ss_pred eccchhheeccHh---hhhcccCCC--Ccccc-eeehHHHHHHHHHHHHcchHHHHhcCcchhcCcHHHhC----chHHH
Confidence 5666666666655 567788764 12333 3333333333333333344445542222 222333333 45665
Q ss_pred HHHHHHHHHHHHhhhhccccchHHHHHHHHHh
Q 012458 315 DLANAFIVIHLVGGYQVYSQPIFAHFEKWICE 346 (463)
Q Consensus 315 ~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~~ 346 (463)
...-++..++.+.+-.-.+...+....+....
T Consensus 313 ~p~~vlAtlAtIIASQA~IsG~FSl~~Qai~L 344 (688)
T TIGR00794 313 WPLFIIATLAAIIASQAVISGVFSITSQAVRL 344 (688)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555555555555555555555555554443
No 114
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=42.18 E-value=30 Score=22.60 Aligned_cols=31 Identities=29% Similarity=0.366 Sum_probs=24.3
Q ss_pred hhhhhHHHHHHHHHHHHHHhhhhhhhccCcc
Q 012458 267 MKKASTMSIITTTIFYLFCGGFGYAAFGDNT 297 (463)
Q Consensus 267 ~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~~ 297 (463)
+..+..+++.++.++..+.|..-|.+||+..
T Consensus 4 me~A~~~~i~i~~lL~~~TgyaiYtaFGppS 34 (46)
T PRK13183 4 MSPALSLAITILAILLALTGFGIYTAFGPPS 34 (46)
T ss_pred cchhHHHHHHHHHHHHHHhhheeeeccCCcc
Confidence 4456677788888888888888889999754
No 115
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=41.95 E-value=4.2e+02 Score=27.52 Aligned_cols=85 Identities=13% Similarity=0.031 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHhhHHHHHhhcccccC-CCCcccccccchhHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHH
Q 012458 124 GTAIAYTVTSAISMRAIQKSNCYHRE-GHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFG 202 (463)
Q Consensus 124 g~~~~y~i~~~~~l~~i~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~ 202 (463)
..+..|++...|+-...+...+.+.. +++++..+.+-.|.++.+.+-+-+.....++.++..+.++.+=. .+..+...
T Consensus 413 il~~if~vTsaDS~t~vla~~ts~g~~~~~~p~~~~ri~W~v~ig~ia~~Ll~~GGl~~lQt~sii~alPf-~~i~~l~~ 491 (504)
T PRK03356 413 ILCFIATVTLINACSYTLAMSTCREVRDGEEPPLLVRIGWSILVGIIGIVLLALGGLKPIQTAIIAGGCPL-FFVNIMVT 491 (504)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHcCCCCCCCCCCcchhhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 34556778888877777766655432 22345556788888887777776767666777776666544332 22223333
Q ss_pred HHHHHHh
Q 012458 203 LGVAKVI 209 (463)
Q Consensus 203 ~~~~~~~ 209 (463)
.++.+..
T Consensus 492 ~sl~k~l 498 (504)
T PRK03356 492 LSFIKDA 498 (504)
T ss_pred HHHHHHH
Confidence 4455544
No 116
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=41.24 E-value=2.9e+02 Score=25.40 Aligned_cols=91 Identities=14% Similarity=0.100 Sum_probs=65.9
Q ss_pred HHHHhhcccceeehhhhhhcCCCCccccchhhhhHHHHHHHHHHHHHHhhhhhhhccCcccccccccccccCChHHHHHH
Q 012458 238 GDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLA 317 (463)
Q Consensus 238 ~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~~~~~ 317 (463)
-++-|-|. +....-+||.-|. ++|+.+|.+-...=++.+...++|+..-..+-+... ..|+.+ -..|....+
T Consensus 62 MviGfI~l-~GeAiL~YR~~r~---~~k~~~KliH~~LH~~Alvl~i~gl~avf~~hn~~~---i~NfyS-LHSWlGl~~ 133 (245)
T KOG1619|consen 62 MVIGFIYL-QGEAILIYRVFRY---TSKKVSKLIHLGLHIIALVLAIIGLCAVFDSHNLVG---IANFYS-LHSWLGLCV 133 (245)
T ss_pred HHHHHHHh-ccceeeeeehhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---ccceee-HHHHHHHHH
Confidence 33444443 4455556666553 358999999999999999999999987777755554 334332 368999999
Q ss_pred HHHHHHHHHhhhhccccch
Q 012458 318 NAFIVIHLVGGYQVYSQPI 336 (463)
Q Consensus 318 ~~~~~i~~~~s~pl~~~p~ 336 (463)
-..+.+|-+..|-.+.+|.
T Consensus 134 v~ly~~Q~v~GF~tfl~pg 152 (245)
T KOG1619|consen 134 VILYSLQWVFGFFTFLFPG 152 (245)
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 9999999999997777763
No 117
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=41.16 E-value=2e+02 Score=28.98 Aligned_cols=90 Identities=10% Similarity=0.097 Sum_probs=58.0
Q ss_pred HHHHHHHcccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCC
Q 012458 99 LEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPD 178 (463)
Q Consensus 99 ~~l~~~~~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~ 178 (463)
++.-+..+|..|.+++.+++.++-|.+.+.+.....+.+..+.+. + +...-.+ ++ .++..++....+
T Consensus 296 ~~Af~~~~g~~g~~~v~i~l~lFafTTilg~~~yge~~~~yl~~~-----~----~~~~~~r---i~-~i~~~~~G~~~~ 362 (416)
T PF01235_consen 296 QAAFSTVLGSWGPYFVAIALFLFAFTTILGWYYYGEKCAEYLFGG-----K----KAIWIYR---IL-FIAMVFIGAVID 362 (416)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----c----eEEEeee---eh-hhhhhhhhhccc
Confidence 334445578889999999999999999999999999999887622 0 0011111 11 123344444556
Q ss_pred ccchhhHHHHHHHHHHHHHHHHH
Q 012458 179 FHNIQSLSVIAAVMSFAYSFIGF 201 (463)
Q Consensus 179 l~~l~~~s~~~~~~~~~~~~i~~ 201 (463)
++.+.-++=++..+..+.-++.+
T Consensus 363 ~~~vW~~~Di~~~lmai~Nlial 385 (416)
T PF01235_consen 363 LDLVWDLADIANGLMAIPNLIAL 385 (416)
T ss_pred chhHHHHHHHHHHHHHHHHHHHH
Confidence 77777676666666665555444
No 118
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=40.93 E-value=4.4e+02 Score=27.49 Aligned_cols=47 Identities=17% Similarity=0.152 Sum_probs=40.1
Q ss_pred cHHHHHHHHcccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhh
Q 012458 97 SYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKS 143 (463)
Q Consensus 97 ~y~~l~~~~~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~ 143 (463)
...++=....||++..+....+++..+..+++-.+..+.....+..+
T Consensus 326 p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRD 372 (550)
T KOG1289|consen 326 PIVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTASSRLVYAFARD 372 (550)
T ss_pred hHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhcc
Confidence 67777888999999999999999999999999999888888776543
No 119
>PRK04949 putative sulfate transport protein CysZ; Validated
Probab=40.58 E-value=3.1e+02 Score=25.53 Aligned_cols=46 Identities=4% Similarity=0.130 Sum_probs=29.8
Q ss_pred hhcCCCCccccchhhhhHHHHHHHHHHHHHHhhhhhhhccCccccccccccc
Q 012458 255 DTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFG 306 (463)
Q Consensus 255 ~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~ 306 (463)
+.+++| ++++.+.+...+..++|...-..+.-.+++.. +.++...+
T Consensus 19 ~~l~~P-----~lr~~~liPl~inllLf~~~l~~~~~~~~~~l-~~l~~~~p 64 (251)
T PRK04949 19 KLILQP-----GLRRFVILPLLVNILLFGGAFWWLFTQLDAWI-DWLMSQLP 64 (251)
T ss_pred HHhcCc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhcCc
Confidence 456654 89999999999999988877544444444322 44444443
No 120
>TIGR00909 2A0306 amino acid transporter.
Probab=40.09 E-value=4e+02 Score=26.68 Aligned_cols=47 Identities=4% Similarity=-0.180 Sum_probs=39.8
Q ss_pred cHHHHHHHHcccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhh
Q 012458 97 SYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKS 143 (463)
Q Consensus 97 ~y~~l~~~~~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~ 143 (463)
...++.++..|+.+..+..+...+.++++..+.....+..+....++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~d 311 (429)
T TIGR00909 265 PLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRD 311 (429)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 56677788888888889999999999999999999999988877654
No 121
>PLN00148 potassium transporter; Provisional
Probab=39.11 E-value=5.6e+02 Score=28.15 Aligned_cols=176 Identities=11% Similarity=0.068 Sum_probs=79.7
Q ss_pred cccchhHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCchhHHH----HH
Q 012458 157 YSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKM----WL 232 (463)
Q Consensus 157 ~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 232 (463)
.+..+.+.+..++++.|-.+++...=+.-..++-+..+++..+. +..+++..+.++. -+..+++......+ .+
T Consensus 192 ~~~~~vv~is~~ILv~LF~vQ~~GT~kVg~~FgPIm~lWf~~i~-~iGiyni~~~~p~--Vl~AlnP~y~~~ff~~~~~~ 268 (785)
T PLN00148 192 LTDGELVLLACVILVGLFALQHCGTHRVAFMFAPIVIIWLLSIG-SIGLYNIIHWNPK--IIHALSPYYIIKFFRVTGKD 268 (785)
T ss_pred CCCCeehhHHHHHHHHHHHHhccccHHHHhhhhhHHHHHHHHHH-HHHHHHHHhcCHH--HhhhcCHHHHHHHHHhCCCc
Confidence 33334444555555555555555555555667777766654443 4567777765321 11122211111111 11
Q ss_pred HHHHHHHHHhhcccceeehhhhhhcCCCCccccchhhhhHHHHHHHHHHHHHHhhhhhhhccC-cccccccccccccCCh
Q 012458 233 VAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGD-NTPGNLLTGFGFYEPY 311 (463)
Q Consensus 233 ~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~-~~~~~il~n~~~~~~~ 311 (463)
-+..+|-++.|..+.- .++.+|-|-. ++.. +..+..+....++--=+|-..|+.=.. +...++....| +
T Consensus 269 g~~~LGgV~L~iTGaE---ALyADlGHFg--~~~I-riaw~~~V~P~L~L~Y~GQaA~ll~~p~~~~npFf~~iP----~ 338 (785)
T PLN00148 269 GWISLGGILLSITGTE---AMFADLGHFT--AASI-RLAFATVIYPCLVVQYMGQAAFLSKNIPSIPNSFYDSIP----D 338 (785)
T ss_pred eEEeecchheeccchh---hhhhhccCCC--ccce-EEeeeehHHHHHHHHHcchHHHHhcCcccccCcHHHhCC----c
Confidence 2335566666666555 4566777641 1222 233333333333333334444554222 22334444443 4
Q ss_pred HHHHHHHHHHHHHHHhhhhccccchHHHHHHHHH
Q 012458 312 WLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWIC 345 (463)
Q Consensus 312 ~~~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~ 345 (463)
++....-+...++.+.+-.-++...+....+...
T Consensus 339 ~~~~P~~vlAtlAtIIASQA~ISg~FSi~~Qai~ 372 (785)
T PLN00148 339 PVFWPVFVIATLAAIVGSQAVITATFSIVKQCHA 372 (785)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444443
No 122
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=38.22 E-value=35 Score=21.98 Aligned_cols=28 Identities=25% Similarity=0.422 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhccCcc
Q 012458 270 ASTMSIITTTIFYLFCGGFGYAAFGDNT 297 (463)
Q Consensus 270 ~~~~a~~~~~~~y~~~g~~gy~~fg~~~ 297 (463)
+...+..+..++-.+.|..-|.+||+..
T Consensus 4 a~~~~i~i~~~lv~~Tgy~iYtaFGppS 31 (43)
T PF02468_consen 4 ATVLAIFISCLLVSITGYAIYTAFGPPS 31 (43)
T ss_pred eeeHHHHHHHHHHHHHhhhhhheeCCCc
Confidence 4556777788888888888899998654
No 123
>PRK12768 CysZ-like protein; Reviewed
Probab=37.49 E-value=2.9e+02 Score=25.48 Aligned_cols=28 Identities=18% Similarity=0.050 Sum_probs=21.6
Q ss_pred hhcCCCCccccchhhhhHHHHHHHHHHHHHHhh
Q 012458 255 DTLKSPPPANQTMKKASTMSIITTTIFYLFCGG 287 (463)
Q Consensus 255 ~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~ 287 (463)
+++.|| ++++++..+...+..++.....
T Consensus 10 ~ql~~~-----~~r~vl~~~~~lt~~l~~~~~~ 37 (240)
T PRK12768 10 ARLLSP-----PMRSVFWKVLGLTLLLLVVLWF 37 (240)
T ss_pred HHhCCH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 456664 8999999999988888877643
No 124
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=36.94 E-value=3.2e+02 Score=24.72 Aligned_cols=70 Identities=13% Similarity=0.052 Sum_probs=50.2
Q ss_pred cchhhhhHHHHHHHHHHHHHHhhhhhhhccCcccccccccccccCChHHHHHHHHHHHHHHHhhhhccccch
Q 012458 265 QTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPI 336 (463)
Q Consensus 265 ~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~ 336 (463)
|+..|.+-...-...++..++|+..-..+-++.++.+ .|+.+ -..|+....-+++.++.+..+..+.+|-
T Consensus 54 k~~~k~~H~~L~~lAl~~~ivGl~avf~~hn~~~~~~-~hfyS-lHSwlGl~t~~L~~lQ~~~Gf~~fl~P~ 123 (214)
T cd08764 54 KKRLKLLHAVLHLLAFILAVIGLKAVFDSHNLAKPPI-PNMYS-LHSWLGLTAVILFSLQWVGGFVSFLFPG 123 (214)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC-Ccccc-hHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5566888888888888888888755444544443343 34431 3688888999999999999997777773
No 125
>CHL00020 psbN photosystem II protein N
Probab=36.06 E-value=33 Score=22.07 Aligned_cols=28 Identities=29% Similarity=0.477 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhhhhccCcc
Q 012458 270 ASTMSIITTTIFYLFCGGFGYAAFGDNT 297 (463)
Q Consensus 270 ~~~~a~~~~~~~y~~~g~~gy~~fg~~~ 297 (463)
+...++.+..++..+.|..-|.+||+..
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGppS 31 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQPS 31 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCch
Confidence 4567777788888888888888999754
No 126
>PLN00150 potassium ion transporter family protein; Provisional
Probab=33.31 E-value=6.9e+02 Score=27.47 Aligned_cols=174 Identities=10% Similarity=0.061 Sum_probs=77.9
Q ss_pred cchhHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCchhHHH----HHHH
Q 012458 159 DTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKM----WLVA 234 (463)
Q Consensus 159 ~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 234 (463)
..+.+.+..++++.|-.+++...=+.-..++-+..+++..+. +..+++..+.++. -+..+++......+ .+-+
T Consensus 211 ~~~Vv~is~~ILv~LF~iQ~~GT~kVg~~FgPIm~~Wf~~i~-~iGiyni~~~~p~--Vl~AlnP~y~~~ff~~~~~~g~ 287 (779)
T PLN00150 211 TNLVTIISCVILVILFSLQRFGTHKVSFLFAPIFLCWFFSLA-LIGCYNIIKWDKS--VFLAFNPLYIVSFFIRNGRQGW 287 (779)
T ss_pred CCeehhhHHHHHHHHHHHHhccchhhhhhhccHHHHHHHHHH-HHHHHHHHhcCHH--HHhhcCHHHHHHHHHhCCCceE
Confidence 333344555555555555555555566667777766654443 4567777664321 11112211111111 1122
Q ss_pred HHHHHHHhhcccceeehhhhhhcCCCCccccchhhhhHHHHHHHHHHHHHHhhhhhhhccC-cccccccccccccCChHH
Q 012458 235 QALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGD-NTPGNLLTGFGFYEPYWL 313 (463)
Q Consensus 235 ~~~~~~~faf~~~~~~~~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~-~~~~~il~n~~~~~~~~~ 313 (463)
..+|-.+.|..+.- .++.+|-|-. ++--+..+..+....++--=+|-..|+.=.. +.+.+..... ++++
T Consensus 288 ~~LG~V~L~iTGaE---ALyADlGHFg---~~~Iriaw~~~V~P~LlL~Y~GQaA~ll~~p~~~~npFf~~i----P~~~ 357 (779)
T PLN00150 288 ESLGGIVLCMTGTE---AMFADLGHFT---VKSMQIAFTSLVYPCLLLTYLGQAAYLVKHMEDVNDPFYRSL----PKPI 357 (779)
T ss_pred EEecceeeeecchh---hhhccccCCC---ccceeeeehhhHHHHHHHHHcchHHHHhcCcccccCcHHHhC----Cchh
Confidence 34555555655555 4566777641 2222333333333333333344444554222 2223334443 3454
Q ss_pred HHHHHHHHHHHHHhhhhccccchHHHHHHHHH
Q 012458 314 IDLANAFIVIHLVGGYQVYSQPIFAHFEKWIC 345 (463)
Q Consensus 314 ~~~~~~~~~i~~~~s~pl~~~p~~~~~~~~~~ 345 (463)
....-+...++.+.+-.-++...+....+...
T Consensus 358 ~~P~~vlAtlAtIIASQA~ISg~FSi~~Qai~ 389 (779)
T PLN00150 358 YWPIFVLATCSAMIASQAMISATFSIVKQAMA 389 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444444443
No 127
>PF02447 GntP_permease: GntP family permease; InterPro: IPR003474 This is a family of integral membrane permeases that are involved in gluconate uptake. Escherichia coli contains several members of this family including GntU, a low affinity transporter [] and GntT, a high affinity transporter [].; GO: 0015128 gluconate transmembrane transporter activity, 0035429 gluconate transmembrane transport, 0016020 membrane
Probab=32.04 E-value=5.6e+02 Score=26.08 Aligned_cols=83 Identities=10% Similarity=0.074 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhhCCc---hHHHHHHhhhhhhhhhHhhhhhHHHHHHhc-cchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 012458 380 VYVVSVTAIAMSFPY---FNQVLGVIGGVIFWPLTIYFPVEMYFKQMN-IEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQ 455 (463)
Q Consensus 380 ~~~~~~~~ia~~vp~---~~~v~~l~Ga~~~~~l~filP~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~v~g~~~si~ 455 (463)
.++....+.....+. ...+++++|.--...+.=.+=+++.+..+| .++.+...+....+--.|.++.+.|..++..
T Consensus 237 iLI~~~t~~~~~~~~~~~~~~~~~flG~p~iALlig~l~a~~~l~~~~~~~~~~~~~~~~~al~~~g~IlLItgaGGafg 316 (441)
T PF02447_consen 237 ILILLGTVADLFLPKGSPLRSILSFLGDPNIALLIGVLIALYLLGRRRGMSREEVMKWLEKALKPAGMILLITGAGGAFG 316 (441)
T ss_pred HHHHHHHHHHhccCCcchHHHHHHHhCCcHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHhhhcchHHHH
Confidence 333444455555553 556888888765444443332332232222 2222223345566777889999999999999
Q ss_pred HHHHhhc
Q 012458 456 GIISAKL 462 (463)
Q Consensus 456 ~~~~~~~ 462 (463)
++++|.+
T Consensus 317 ~vl~~sg 323 (441)
T PF02447_consen 317 QVLKDSG 323 (441)
T ss_pred HHHHhCC
Confidence 9888753
No 128
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism]
Probab=31.40 E-value=6.4e+02 Score=26.53 Aligned_cols=56 Identities=13% Similarity=0.128 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHHHHcccccchhhHH
Q 012458 59 IAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVDMCLGKTNAWACSF 116 (463)
Q Consensus 59 ~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~~~~~G~~g~~~~~~ 116 (463)
+.|++.+++.+..-..|...+.-..|..+..+| ...+.-.++++..+|+.+++.-.
T Consensus 55 VlGvlSLi~WtLtlIVTiKYv~~vlRADN~GEG--GilsL~aL~~~~~~~~~~~l~~~ 110 (627)
T COG3158 55 VLGVLSLIIWTLTLIVTIKYVLFVLRADNNGEG--GILSLMALARRAAPRRTALLIIL 110 (627)
T ss_pred eeeHHHHHHHHHHHHHHHhhheeEEecCCCCCc--hhhhHHHHHHhhcCCCchhhhhH
Confidence 568999999999888888888888776554334 78899999999998777665443
No 129
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=28.30 E-value=2.1e+02 Score=24.35 Aligned_cols=68 Identities=16% Similarity=0.177 Sum_probs=52.1
Q ss_pred cchhhhhHHHHHHHHHHHHHHhhhhhhhccCcccccccccccccCChHHHHHHHHHHHHHHHhhhhccccch
Q 012458 265 QTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPI 336 (463)
Q Consensus 265 ~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~ 336 (463)
|+.+|.+-...-...++..++|+..-..+.++. ++ .|+.+ -..|+..+.-+++.++-+..+..+.+|.
T Consensus 44 k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~--~~-~~fyS-lHSwlGl~t~~l~~lQ~~~Gf~~f~~P~ 111 (153)
T cd08765 44 KLLMKLIHAGLHILAFILAIISVVAVFVFHNAK--NI-PNMYS-LHSWVGLAAVILYPLQLVLGISVYLLPV 111 (153)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHcccc--CC-Ccccc-HHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 677888888888888888888886655554443 32 33331 3588999999999999999999888885
No 130
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=27.92 E-value=4.2e+02 Score=23.25 Aligned_cols=68 Identities=12% Similarity=0.085 Sum_probs=50.5
Q ss_pred cchhhhhHHHHHHHHHHHHHHhhhhhhhccCcccccccccccccCChHHHHHHHHHHHHHHHhhhhccccch
Q 012458 265 QTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPI 336 (463)
Q Consensus 265 ~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~ 336 (463)
|+.+|.+-...-...++..++|+.....+-++ ..+ .|+.+ -..|+....-.++.+|-+..+....+|.
T Consensus 67 k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~--~~~-~nlyS-lHSWlGl~t~~Lf~lQ~~~Gf~~f~~p~ 134 (179)
T cd08762 67 KLPWKLLHAGLLLLAFILTVIGLCAVFNFHNV--HHT-ANLYS-LHSWVGICTVALFTCQWVMGFTSFLLPW 134 (179)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhccc--cCc-cchhh-HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 67788899998889999999998555555443 333 33321 3688888999999999999998877773
No 131
>PLN02351 cytochromes b561 family protein
Probab=26.95 E-value=5.1e+02 Score=23.93 Aligned_cols=68 Identities=10% Similarity=0.112 Sum_probs=49.3
Q ss_pred cchhhhhHHHHHHHHHHHHHHhhhhhhhccCcccccccccccccCChHHHHHHHHHHHHHHHhhhhccccchH
Q 012458 265 QTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIF 337 (463)
Q Consensus 265 ~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~ 337 (463)
++.+|.+-...-...++..++|+.. .|- .+++...|+.+ -..|+....-+++.+|-+..+..+.+|..
T Consensus 80 ~k~~K~lH~~Lh~~Ali~~vvGl~a--~fh--~~~~~i~nlyS-LHSWlGl~tv~Lf~lQwv~Gf~~F~~P~~ 147 (242)
T PLN02351 80 RKTKKSVHLWLQGLALASGVFGIWT--KFH--GQDGIVANFYS-LHSWMGLICVSLFGAQWLTGFMSFWHRGE 147 (242)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH--HHh--cccCCccchhH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4558888888888888888888866 443 22334455542 36888889999999999999887777643
No 132
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=25.82 E-value=2.5e+02 Score=23.60 Aligned_cols=68 Identities=9% Similarity=0.068 Sum_probs=50.7
Q ss_pred cchhhhhHHHHHHHHHHHHHHhhhhhhhccCcccccccccccccCChHHHHHHHHHHHHHHHhhhhccccch
Q 012458 265 QTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPI 336 (463)
Q Consensus 265 ~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~ 336 (463)
|+..|.+-...-...++..++|+..-..+.++. + ..|+.+ ...|+....-+++.++.+..+..+.+|-
T Consensus 37 k~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~~--~-~~hf~S-lHswlGl~t~~L~~lQ~~~G~~~f~~P~ 104 (143)
T cd08763 37 KRSTKILHGLLHIMALVISLVGLVAVFDYHQAN--G-YPDMYS-LHSWCGILTFVLYFLQWLIGFSFFLFPG 104 (143)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHcccc--C-CCcccc-HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 566777888888888888888886655554432 2 234432 3588899999999999999998888874
No 133
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=25.38 E-value=7.9e+02 Score=25.65 Aligned_cols=102 Identities=15% Similarity=0.052 Sum_probs=47.8
Q ss_pred cccchHHHHHHHHHhhccccchhhHH----HHHHHh---Chh--------HHHHHHHHHHHHHHHHHHHHHH---cc---
Q 012458 25 KRTGTLWTAVAHIITGVIGSGVLSLA----WSMAQL---GWI--------AGPLAMVIFASVTLFATFLLCD---CH--- 83 (463)
Q Consensus 25 ~~~~s~~~a~~~l~~~~iG~GiL~LP----~~f~~~---G~~--------~gii~li~~~~~s~~t~~ll~~---~~--- 83 (463)
.+.-|| ..-+..+-+|+|++-.+ ..-.+. |-. .+.....+-+.+..++.+.+.- +.
T Consensus 88 fs~~SW---~aMLFaAGmGigl~fwgvaEp~~~y~~pp~~~~~~t~~A~~~Al~~tffHWG~~~WaiY~lvalalaYf~~ 164 (537)
T COG1292 88 FSTLSW---LAMLFAAGMGIGLLFWGVAEPVYYYATPPPGAEPNTTEAAEQALAYTFFHWGLHAWAIYALVALALAYFHY 164 (537)
T ss_pred cchhHH---HHHHHHcccCceeeEeechhhHHHhcCCCCCCCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHHhheeeE
Confidence 344455 66777888888886542 222111 111 2334444444444444444333 22
Q ss_pred cCCCCCCCCCccccHHHHHHHHcccccchhhHHHHHHHHHhHHHHHHH
Q 012458 84 RGPDPEYGPGRNRSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTV 131 (463)
Q Consensus 84 ~~~~~~~~~~~~~~y~~l~~~~~G~~g~~~~~~~~~~~~~g~~~~y~i 131 (463)
|+..| ..-+..-|+-++++.-|+.|+.+=.+.++.+.+|..+..-.
T Consensus 165 rk~~p--l~lss~l~Pllg~~~~G~~G~~IDi~aiiaTl~GiATsLG~ 210 (537)
T COG1292 165 RKGLP--LLLSSALYPLLGERIKGPIGHAVDILAIIATLFGIATSLGL 210 (537)
T ss_pred ecCCC--chhhhhhhhhhcccccCccchhhHHHHHHHHHHHHHHHHHH
Confidence 22111 10122345556666556666655555555555665554433
No 134
>PF05656 DUF805: Protein of unknown function (DUF805); InterPro: IPR008523 This entry is represented by Lactobacillus phage LBR48, DUF805. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0016021 integral to membrane
Probab=23.88 E-value=3.7e+02 Score=21.28 Aligned_cols=25 Identities=12% Similarity=0.146 Sum_probs=12.3
Q ss_pred hhHhhhhhHHHHHHhccchhhHHHH
Q 012458 409 PLTIYFPVEMYFKQMNIEAWTRKWV 433 (463)
Q Consensus 409 ~l~filP~l~~~~~~~~~~~~~~~~ 433 (463)
.+...+|.+.....|-++.+...|+
T Consensus 55 ~l~~~i~~lal~vRRlhD~G~sg~~ 79 (120)
T PF05656_consen 55 ILLLFIPSLALTVRRLHDIGRSGWW 79 (120)
T ss_pred HHHHHHHHHHHHhhhhhcCCCCCch
Confidence 4455556655554443444444443
No 135
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=22.27 E-value=2e+02 Score=25.56 Aligned_cols=29 Identities=17% Similarity=0.225 Sum_probs=22.8
Q ss_pred HHHHHhhhhhhhhhHhhhhhHHHHHHhcc
Q 012458 397 QVLGVIGGVIFWPLTIYFPVEMYFKQMNI 425 (463)
Q Consensus 397 ~v~~l~Ga~~~~~l~filP~l~~~~~~~~ 425 (463)
.-.-..|++.++-+..++|+...+..+++
T Consensus 45 ~~vw~f~Gi~GgGlmvl~pa~~~l~~~~~ 73 (195)
T PF05805_consen 45 CEVWYFGGIIGGGLMVLLPAIVFLAAGKR 73 (195)
T ss_pred hhheecCccccchHHHHHHHHHHHHhCCC
Confidence 34556777888888889999999988765
No 136
>PF07125 DUF1378: Protein of unknown function (DUF1378); InterPro: IPR009808 This entry is represented by Bacteriophage 933W, Orf25. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of hypothetical bacterial and phage proteins of around 59 residues in length. Bacterial members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=20.68 E-value=2.7e+02 Score=18.97 Aligned_cols=30 Identities=17% Similarity=0.219 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012458 431 KWVMLRVFSYVCFIVSTFGLVGSIQGIISA 460 (463)
Q Consensus 431 ~~~~~~~~~~~g~~~~v~g~~~si~~~~~~ 460 (463)
+..++++..+++.+..+.|.|-.||+-++.
T Consensus 5 ~~~lLyFctvVcaLYLvsGGyk~IRnY~r~ 34 (59)
T PF07125_consen 5 QTILLYFCTVVCALYLVSGGYKVIRNYFRR 34 (59)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 345778888999999999999999998775
No 137
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=20.29 E-value=2.6e+02 Score=21.91 Aligned_cols=17 Identities=6% Similarity=0.032 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012458 435 LRVFSYVCFIVSTFGLV 451 (463)
Q Consensus 435 ~~~~~~~g~~~~v~g~~ 451 (463)
...++++|++.+....+
T Consensus 77 tl~~lllGv~~G~~n~w 93 (100)
T TIGR02230 77 TLTMLIVGVVIGCLNAW 93 (100)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455556655555443
Done!