Query         012458
Match_columns 463
No_of_seqs    134 out of 1199
Neff          9.4 
Searched_HMMs 29240
Date          Mon Mar 25 09:50:40 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012458.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012458hhsearch_pdb -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3l1l_A Arginine/agmatine antip  99.7 1.3E-14 4.3E-19  146.5  26.5  366   24-426     6-379 (445)
  2 3gia_A Uncharacterized protein  99.5 1.1E-11 3.9E-16  124.7  32.6  355   24-426     4-369 (444)
  3 4djk_A Probable glutamate/gamm  99.3 6.2E-10 2.1E-14  114.1  26.8  293   23-340     8-316 (511)
  4 2jln_A MHP1; hydantoin, transp  98.8 1.7E-06 5.7E-11   88.0  25.6  157   23-198    22-180 (501)
  5 3dh4_A Sodium/glucose cotransp  98.1  0.0027 9.2E-08   64.8  29.6  155   25-201    19-175 (530)
  6 2xq2_A Sodium/glucose cotransp  97.8   0.024 8.3E-07   58.5  30.3  154   25-200    48-203 (593)
  7 2a65_A Leutaa, Na(+):neurotran  74.5      72  0.0025   31.8  34.0  107   28-142     9-121 (519)
  8 2wsw_A BCCT family betaine/car  54.2      49  0.0017   32.8   9.0   69  123-191   417-486 (509)
  9 4ain_A Glycine betaine transpo  27.7 4.6E+02   0.016   26.0  14.2   86  123-211   418-506 (539)
 10 3gia_A Uncharacterized protein  25.5 3.5E+02   0.012   25.6  10.1   48   96-143   258-305 (444)

No 1  
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.68  E-value=1.3e-14  Score=146.46  Aligned_cols=366  Identities=10%  Similarity=0.008  Sum_probs=204.9

Q ss_pred             ccccchHHHHHHHHHhhccccchhhHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHH
Q 012458           24 IKRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVD  103 (463)
Q Consensus        24 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~~  103 (463)
                      ++|+.+.++..+..+++++|+|++.+|....+.|.. +++..++.++..........|...+. |+.|     ...+..+
T Consensus         6 ~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~-~~~~~li~~~~~~~~a~~~~el~~~~-p~~G-----g~y~~~~   78 (445)
T 3l1l_A            6 DAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSFLD-PSPG-----GSYAYAR   78 (445)
T ss_dssp             -CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTH-HHHHHHHHHHHHHHHHHHHHHHHHHC-CCTT-----THHHHHH
T ss_pred             CCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHccC-CCCC-----CchhhHH
Confidence            456789999999999999999999999999888864 77888888888888888888866553 2223     5667779


Q ss_pred             HHcccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCCccchh
Q 012458          104 MCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQ  183 (463)
Q Consensus       104 ~~~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~  183 (463)
                      +.+||....+......+........+....++.+..+++..     +    ..+....+.+ ...+++-....+..|...
T Consensus        79 ~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~----~~~~~~~~~~-~~~~~~~~in~~g~~~~~  148 (445)
T 3l1l_A           79 RCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL-----K----DPWVLTITCV-VVLWIFVLLNIVGPKMIT  148 (445)
T ss_dssp             HHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGG-----G----SHHHHHHHHH-HHHHHHHHHHHHCHHHHH
T ss_pred             hHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccc-----c----ccHHHHHHHH-HHHHHHHHHHHhchHHHH
Confidence            99999999888888887777777777777666655433210     0    0011111111 111122222333444445


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCchhHHHHHHHHHHHHHHhhcccceeehhhhhhcCCCCcc
Q 012458          184 SLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPA  263 (463)
Q Consensus       184 ~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~  263 (463)
                      .++.+.....+...++   ..+.-....++... .+++. .+....+.++..++....|+|.+...+....+|+|||   
T Consensus       149 ~~~~~~~~~~i~~~~~---~~i~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p---  220 (445)
T 3l1l_A          149 RVQAVATVLALIPIVG---IAVFGWFWFRGETY-MAAWN-VSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNP---  220 (445)
T ss_dssp             HHHHHHHHHHHHHHHH---HHHTTSTTCCCCCC-CCC------------HHHHHHHHHHTTTTTTHHHHGGGGBSSH---
T ss_pred             HHHHHHHHHHHHHHHH---HHHHHHHHhChhhc-ccccC-ccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCc---
Confidence            5544433333221111   11111111111100 01111 1112234567888999999999999999999999998   


Q ss_pred             ccchhhhhHHHHHHHHHHHHHHhhhhhhhccCcccc----cccccccccCChHHHHHHHHHHHHHHHhhhhccccchHHH
Q 012458          264 NQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPG----NLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAH  339 (463)
Q Consensus       264 ~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~~~~----~il~n~~~~~~~~~~~~~~~~~~i~~~~s~pl~~~p~~~~  339 (463)
                      +|+.+|++..+..+..++|....+......+.+...    +...-+.....++...+..+...+..+.+.-.......+.
T Consensus       221 ~r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~  300 (445)
T 3l1l_A          221 KRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQT  300 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            688999999999999999999888777666543211    1111111001234455556666666655554444444444


Q ss_pred             HHHHHHhhcCCCCccccccccCCCCCCCcCCchhhHHHHHHHHHHHHHHHhhCC----chHHHHHHhhhhhhhhhHhhhh
Q 012458          340 FEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFP----YFNQVLGVIGGVIFWPLTIYFP  415 (463)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp----~~~~v~~l~Ga~~~~~l~filP  415 (463)
                      +...-.++.-. ++-.+.+         ++..+.+-++-...+...+.+....|    .++.+.++.+  .+..+.|.++
T Consensus       301 ~~~~a~dg~lP-~~~~~~~---------~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~y~~~  368 (445)
T 3l1l_A          301 AKAAADDGLFP-PIFARVN---------KAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSV--IFTLVPYLYT  368 (445)
T ss_dssp             HHHHHHTTSSC-GGGGCCC---------TTCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHH--HHHHHHHHHH
T ss_pred             HHHHHhCCCCc-HHHHhcC---------CCCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HHHHHHHHHH
Confidence            44332221100 1111100         11112332222222222222211222    3555655554  2347889999


Q ss_pred             hHHHHHHhccc
Q 012458          416 VEMYFKQMNIE  426 (463)
Q Consensus       416 ~l~~~~~~~~~  426 (463)
                      ++.+++.++++
T Consensus       369 ~~~~~~~r~~~  379 (445)
T 3l1l_A          369 CAALLLLGHGH  379 (445)
T ss_dssp             HHHHHHHHSSS
T ss_pred             HHHHHHHhhcC
Confidence            99999876544


No 2  
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.55  E-value=1.1e-11  Score=124.72  Aligned_cols=355  Identities=9%  Similarity=-0.000  Sum_probs=200.6

Q ss_pred             ccccchHHHHHHHHHhhccccchhhHHHH-HHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHH
Q 012458           24 IKRTGTLWTAVAHIITGVIGSGVLSLAWS-MAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAV  102 (463)
Q Consensus        24 ~~~~~s~~~a~~~l~~~~iG~GiL~LP~~-f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~  102 (463)
                      ++|+.+.++..+..+++++|+|++..|.. ...+|. .+++..++.+++.......+.|...+.+ +.|     ...+..
T Consensus         4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~-~~~~~~li~~~~~~~~~~~~~el~~~~P-~~G-----g~y~~~   76 (444)
T 3gia_A            4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGR-NLPETFILSGIYALLVAYSYTKLGAKIV-SNA-----GPIAFI   76 (444)
T ss_dssp             CCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHHHTTCC-CTT-----THHHHH
T ss_pred             cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHhhCC-CCC-----cHHHhH
Confidence            46678999999999999999999987644 556676 6788888888888888888888776643 223     566788


Q ss_pred             HHHcccc--cchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhH---HHHHHHHHHhhcCC
Q 012458          103 DMCLGKT--NAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYM---LIFGAVQLILSQAP  177 (463)
Q Consensus       103 ~~~~G~~--g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~---~i~~~~~~pl~~~~  177 (463)
                      ++.+|++  +.+ ......+........+....++.+..+++.             .....+.   .+...+++-....+
T Consensus        77 ~~~~G~~~~~g~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~in~~  142 (444)
T 3gia_A           77 HKAIGDNIITGA-LSILLWMSYVISIALFAKGFAGYFLPLINA-------------PINTFNIAITEIGIVAFFTALNFF  142 (444)
T ss_dssp             HHHHCSSHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------------CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------------CCchHHHHHHHHHHHHHHHHHHHH
Confidence            8999996  333 234444555555666667777777665432             0111221   11112222223333


Q ss_pred             CccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCchhHHHHHHHHHHHHHHhhcccceeehhhhhhc
Q 012458          178 DFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTL  257 (463)
Q Consensus       178 ~l~~l~~~s~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m  257 (463)
                      ..|....++.+.....+...++.++..+..   .++.     ++.+......+.+++.++....|+|.+...+....+|+
T Consensus       143 g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~---~~~~-----~~~~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~  214 (444)
T 3gia_A          143 GSKAVGRAEFFIVLVKLLILGLFIFAGLIT---IHPS-----YVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHI  214 (444)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCGG-----GTSCCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGB
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cChh-----hcCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHc
Confidence            445555555444443332222222222222   1111     11111112344578888899999999999999999999


Q ss_pred             CCCCccccchhhhhHHHHHHHHHHHHHHhhhhhhhccCccc----c-cccccccccCChHHHHHHHHHHHHHHHhhhhcc
Q 012458          258 KSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTP----G-NLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVY  332 (463)
Q Consensus       258 ~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~~~----~-~il~n~~~~~~~~~~~~~~~~~~i~~~~s~pl~  332 (463)
                      |||   +|+.+|++..+..++.++|....+......+.+..    + .+.....+..+++...+..+...+..+.+.-..
T Consensus       215 k~P---~r~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~  291 (444)
T 3gia_A          215 ENP---KKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNAT  291 (444)
T ss_dssp             SSH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCc---ccchhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            998   57799999999999999999887765555443210    1 111101100123334455555555555555544


Q ss_pred             ccchHHHHHHHHHhhcCCCCccccccccCCCCCCCcCCchhhHHHHHHHHHHHHHHHhhCCchHHHHHHhhhhhhhhhHh
Q 012458          333 SQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTI  412 (463)
Q Consensus       333 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~v~~l~Ga~~~~~l~f  412 (463)
                      .....+.+...-.++.-.+.+.+.           +++.+.+-++-+  .+++.+++.. .+++.+.++.+.  +..+.|
T Consensus       292 ~~~~sR~l~a~a~dg~lP~~f~~~-----------~~~~P~~a~~~~--~~~~~~~~~~-~~~~~l~~~~~~--~~~~~~  355 (444)
T 3gia_A          292 IYGGANVAYSLAKDGELPEFFERK-----------VWFKSTEGLYIT--SALGVLFALL-FNMEGVASITSA--VFMVIY  355 (444)
T ss_dssp             HTTTHHHHHHHHHHSSCCSSCCTT-----------SCCSCTHHHHHH--HHHHHHHHHH-SCHHHHHHHHHH--HHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCCHHHhCC-----------CCCCCcHHHHHH--HHHHHHHHHH-cCHHHHHHHHHH--HHHHHH
Confidence            444444444443322111111111           111122222111  1222222222 367777776543  346888


Q ss_pred             hhhhHHHHHHhccc
Q 012458          413 YFPVEMYFKQMNIE  426 (463)
Q Consensus       413 ilP~l~~~~~~~~~  426 (463)
                      .++++.+++.+|++
T Consensus       356 ~~~~~~~~~~r~~~  369 (444)
T 3gia_A          356 LFVILSHYILIDEV  369 (444)
T ss_dssp             HHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHhhhcC
Confidence            88888888876543


No 3  
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=99.31  E-value=6.2e-10  Score=114.08  Aligned_cols=293  Identities=11%  Similarity=0.009  Sum_probs=157.2

Q ss_pred             CccccchHHHHHHHHHhhccccchhhHHHHHHHhChhHHHHHHHHHHHHHH-HHHHHHHHccc--CCCCCCCCCccccHH
Q 012458           23 FIKRTGTLWTAVAHIITGVIGSGVLSLAWSMAQLGWIAGPLAMVIFASVTL-FATFLLCDCHR--GPDPEYGPGRNRSYL   99 (463)
Q Consensus        23 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~~f~~~G~~~gii~li~~~~~s~-~t~~ll~~~~~--~~~~~~~~~~~~~y~   99 (463)
                      +.+|+.+.++..+..++.++|  +.++|. ....|.. +++..++.+.+.. .....+.|...  +. | .|     ...
T Consensus         8 ~~~r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~~-~~~~~~i~~~~~~l~~al~~ael~s~~~~-P-~G-----G~y   76 (511)
T 4djk_A            8 GKAKQLTLLGFFAITASMVMA--VYEYPT-FATSGFS-LVFFLLLGGILWFIPVGLCAAEMATVDGW-E-EG-----GVF   76 (511)
T ss_dssp             ----CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTTH-HHHHHHHHHHHTHHHHHHHHHHHHTTSCC----------CHH
T ss_pred             ccCccccHHHHHHHHHHHHHh--hchhHH-HHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHcccccC-C-CC-----Chh
Confidence            446778999999999999986  567775 4666653 3444444444332 25566667665  54 3 44     556


Q ss_pred             HHHHHHcccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCCc
Q 012458          100 EAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDF  179 (463)
Q Consensus       100 ~l~~~~~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l  179 (463)
                      ..+++.+||+.+.+......+.......++....++.+..++..   +.-.   ...+.... ..+..+.++-+...+..
T Consensus        77 ~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p~~~---~~~~~~~~-~~~~~~~~~~~in~~g~  149 (511)
T 4djk_A           77 AWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKW---PALN---EDPITKTI-AALIILWALALTQFGGT  149 (511)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTC---GGGT---SCSSHHHH-HHHHHHHHHHHHHHTCS
T ss_pred             hhHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---cccc---cCcHHHHH-HHHHHHHHHHHHHHhCh
Confidence            67788999998888887777777766666766666665433210   0000   00011111 11112222223333445


Q ss_pred             cchhhHHHHHHHHHHH-HHHHHHHHHHHHHhcCCccc--ccccc-CCCCchhHHHHHHHHHHHHHHhhcccceeehhhhh
Q 012458          180 HNIQSLSVIAAVMSFA-YSFIGFGLGVAKVIGNGFVM--GSFSG-VSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQD  255 (463)
Q Consensus       180 ~~l~~~s~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~  255 (463)
                      |....++.+.....+. ..++.++..+.....+++..  .+... .++...    .+.+.++....|+|.+........+
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~a~~G~e~~~~~a~  225 (511)
T 4djk_A          150 KYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSK----VGTLVVFVAFILSYMGVEASATHVN  225 (511)
T ss_dssp             SSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTS----TTTTTTHHHHHHHHTTGGGGTGGGS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCccc----chHHHHHHHHHHHHhhHHHHHHHHH
Confidence            5555555544332111 11122222222222111110  01111 111111    1223456678899999999999999


Q ss_pred             hcCCCCccccchhhhhHHHHHHHHHHHHHHhhhhhhhccCccccc---c---ccc-ccccC--ChHHHHHHHHHHHHHHH
Q 012458          256 TLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGN---L---LTG-FGFYE--PYWLIDLANAFIVIHLV  326 (463)
Q Consensus       256 ~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~~~~~~---i---l~n-~~~~~--~~~~~~~~~~~~~i~~~  326 (463)
                      |+|||   +|+.+|++..+..++.++|....+......+++....   .   ... +....  ..+...+..+...+..+
T Consensus       226 E~k~P---~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  302 (511)
T 4djk_A          226 EMSNP---GRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVL  302 (511)
T ss_dssp             SSSCC---TTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTTHHHHHHHHHHHHHH
T ss_pred             hccCc---ccchhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH
Confidence            99998   5889999999999999999998887766665543211   0   011 11111  24566666776666666


Q ss_pred             hhhhccccchHHHH
Q 012458          327 GGYQVYSQPIFAHF  340 (463)
Q Consensus       327 ~s~pl~~~p~~~~~  340 (463)
                      .+.-.......+.+
T Consensus       303 ~~~~~~~~~~sR~l  316 (511)
T 4djk_A          303 AEIASWIVGPSRGM  316 (511)
T ss_dssp             HHHHHHTTHHHHHT
T ss_pred             HHHHHHHHHHHHHH
Confidence            66544444333333


No 4  
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=98.79  E-value=1.7e-06  Score=87.96  Aligned_cols=157  Identities=14%  Similarity=0.106  Sum_probs=98.0

Q ss_pred             CccccchHHHHHHHHHhhccccchhhHHHHHHH-hChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHH
Q 012458           23 FIKRTGTLWTAVAHIITGVIGSGVLSLAWSMAQ-LGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEA  101 (463)
Q Consensus        23 ~~~~~~s~~~a~~~l~~~~iG~GiL~LP~~f~~-~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l  101 (463)
                      +++|+.++++-+..-+...++.+-..+...+.. .++..+++.+++..++...-..++.....+        ...++.++
T Consensus        22 ~~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~~~l~~~~G~~--------~Gl~~~v~   93 (501)
T 2jln_A           22 YAERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAIR--------WGINFTVA   93 (501)
T ss_dssp             GGGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTHHHHH--------HCCCHHHH
T ss_pred             hhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHhHHHhh--------cCCChhhh
Confidence            345666776666666666666666655554443 223444444444444333333333332211        23479999


Q ss_pred             HHHHcccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccc-cchhHHHHHHHHHHhhcCCCcc
Q 012458          102 VDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYS-DTYYMLIFGAVQLILSQAPDFH  180 (463)
Q Consensus       102 ~~~~~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~pl~~~~~l~  180 (463)
                      .+..||++|..+..+...+.++|-........++.+..++.... +         +. ...+.+++.++.++.... .++
T Consensus        94 ~R~~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~-g---------~~~~~v~~~i~~~l~~~~~~~-G~~  162 (501)
T 2jln_A           94 ARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLT-G---------FTNLPLWIVIFGAIQVVTTFY-GIT  162 (501)
T ss_dssp             TTTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C---------CCCHHHHHHHHHHHHHHHHTT-HHH
T ss_pred             hHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C---------cchHHHHHHHHHHHHHHHHHh-CHH
Confidence            99999999999999999999999998888899999988765321 1         11 234455666666776644 467


Q ss_pred             chhhHHHHHHHHHHHHHH
Q 012458          181 NIQSLSVIAAVMSFAYSF  198 (463)
Q Consensus       181 ~l~~~s~~~~~~~~~~~~  198 (463)
                      .++.+..+.....+..++
T Consensus       163 ~i~~~~~~~~p~~~i~~i  180 (501)
T 2jln_A          163 FIRWMNVFASPVLLAMGV  180 (501)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            777777766655544333


No 5  
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=98.15  E-value=0.0027  Score=64.78  Aligned_cols=155  Identities=12%  Similarity=0.086  Sum_probs=86.2

Q ss_pred             cccchHHHHHHHHHhhcccc-chhhHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHH
Q 012458           25 KRTGTLWTAVAHIITGVIGS-GVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVD  103 (463)
Q Consensus        25 ~~~~s~~~a~~~l~~~~iG~-GiL~LP~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~~  103 (463)
                      .|+.+++...+.+..+.+++ -.+++|-...+.|+......... ++.-......+..-.++.       +..|.+|.-+
T Consensus        19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~~-~~~~~i~~~~~~p~~~~~-------~~~T~~e~l~   90 (530)
T 3dh4_A           19 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMS-AITLIIVGKYFLPIFIEK-------GIYTIPEFVE   90 (530)
T ss_dssp             CSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHHH-HHHHHHHHHHTHHHHHHT-------TCCSHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHH-HHHHHHHHHHHHHHHHHc-------CCccHHHHHH
Confidence            46677778777777766666 67889999888997543211111 111111222222222221       5679999999


Q ss_pred             HHcccccchhhHHHHHH-HHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCCccch
Q 012458          104 MCLGKTNAWACSFFVHV-GLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNI  182 (463)
Q Consensus       104 ~~~G~~g~~~~~~~~~~-~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l  182 (463)
                      +-||++.+.+..+...+ +.+..+.+-+...+..++.++              .++....+++.++++..-....-++..
T Consensus        91 ~Rfg~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~--------------Gi~~~~~i~i~~~i~~~Yt~~GGl~aV  156 (530)
T 3dh4_A           91 KRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETIL--------------GIPLMYSILGLALFALVYSIYGGLSAV  156 (530)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--------------TCCHHHHHHHHHHHHHHTTC------C
T ss_pred             HHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------------CCCHHHHHHHHHHHHHHHHHhcchHHH
Confidence            99999888776655443 222223333333444454442              233444455666666777788888888


Q ss_pred             hhHHHHHHHHHHHHHHHHH
Q 012458          183 QSLSVIAAVMSFAYSFIGF  201 (463)
Q Consensus       183 ~~~s~~~~~~~~~~~~i~~  201 (463)
                      .+...+-.+..+...+++.
T Consensus       157 ~~TD~iQ~~im~~g~~~v~  175 (530)
T 3dh4_A          157 VWTDVIQVFFLVLGGFMTT  175 (530)
T ss_dssp             CSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            8888887777654444333


No 6  
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=97.84  E-value=0.024  Score=58.54  Aligned_cols=154  Identities=12%  Similarity=0.089  Sum_probs=84.9

Q ss_pred             cccchHHHHHHHHHhhcccc-chhhHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHHH
Q 012458           25 KRTGTLWTAVAHIITGVIGS-GVLSLAWSMAQLGWIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAVD  103 (463)
Q Consensus        25 ~~~~s~~~a~~~l~~~~iG~-GiL~LP~~f~~~G~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~~  103 (463)
                      .|+.+++...+.+..+.+++ ..++.|-...+.|+........ .+.........+..-.++.       +..|.+|.-+
T Consensus        48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~-~~~~~~~~~~~~~p~~~r~-------~~~T~~e~l~  119 (593)
T 2xq2_A           48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWM-SAITLIIVGKYFLPIFIEK-------GIYTIPEFVE  119 (593)
T ss_dssp             ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHH-HHHHHHHHHHTHHHHHHHT-------TCCSHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHH-HHHHHHHHHHHHHHHHHhC-------CCCCcHHHHH
Confidence            45667888888887666665 6678998888889753221111 0110111122222222221       5679999999


Q ss_pred             HHcccccchhhHHHHHH-HHHhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCCccch
Q 012458          104 MCLGKTNAWACSFFVHV-GLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNI  182 (463)
Q Consensus       104 ~~~G~~g~~~~~~~~~~-~~~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l  182 (463)
                      +-||++.+.+..+...+ ..+......+...+..++.++.              ++....+++.++++.......-+++.
T Consensus       120 ~Rfg~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~G--------------i~~~~~i~i~~~i~~~Yt~~GGl~av  185 (593)
T 2xq2_A          120 KRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG--------------IPLMYSILGLALFALVYSIYGGLSAV  185 (593)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHHHHTTC---C
T ss_pred             HHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------ccHHHHHHHHHHHHHHHHHhcchHHH
Confidence            99999877666554432 2233333333445555555432              33334455666666777788888888


Q ss_pred             hhHHHHHHHHHHHHHHHH
Q 012458          183 QSLSVIAAVMSFAYSFIG  200 (463)
Q Consensus       183 ~~~s~~~~~~~~~~~~i~  200 (463)
                      .+...+-.+..+...+++
T Consensus       186 ~~TD~iQ~iiml~~~l~v  203 (593)
T 2xq2_A          186 VWTDVIQVFFLVLGGFMT  203 (593)
T ss_dssp             CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            888877766655443333


No 7  
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=74.52  E-value=72  Score=31.77  Aligned_cols=107  Identities=13%  Similarity=0.052  Sum_probs=55.7

Q ss_pred             chHHHHHHHHHhhccccc-hhhHHHHHHHhC----hhHHHHHHHHHHHHHHHHHHHHHHccc-CCCCCCCCCccccHHHH
Q 012458           28 GTLWTAVAHIITGVIGSG-VLSLAWSMAQLG----WIAGPLAMVIFASVTLFATFLLCDCHR-GPDPEYGPGRNRSYLEA  101 (463)
Q Consensus        28 ~s~~~a~~~l~~~~iG~G-iL~LP~~f~~~G----~~~gii~li~~~~~s~~t~~ll~~~~~-~~~~~~~~~~~~~y~~l  101 (463)
                      +|..+-++..+.+.+|.| +.-.||-..+-|    +++=++.+++++.=-.+.=..+-|-.. +.  +.|  ....|..+
T Consensus         9 ~sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~~~--r~~--~i~a~~~l   84 (519)
T 2a65_A            9 ATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQG--HGT--TPAIFYLL   84 (519)
T ss_dssp             SCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTT--CCS--HHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhcc--CCC--HHHHHHHh
Confidence            455666788889999998 677899987766    444445555555433333334444211 11  001  23344444


Q ss_pred             HHHHcccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHh
Q 012458          102 VDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQK  142 (463)
Q Consensus       102 ~~~~~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~  142 (463)
                      +    .++....+.....+..+..++-|.++.+-.+..+..
T Consensus        85 ~----~~~~~~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~  121 (519)
T 2a65_A           85 W----RNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIK  121 (519)
T ss_dssp             S----CSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             c----CCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3    211111233344444455555666666665555443


No 8  
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=54.20  E-value=49  Score=32.83  Aligned_cols=69  Identities=12%  Similarity=0.050  Sum_probs=46.5

Q ss_pred             HhHHHHHHHHHHhhHHHHHhhcccccC-CCCcccccccchhHHHHHHHHHHhhcCCCccchhhHHHHHHH
Q 012458          123 YGTAIAYTVTSAISMRAIQKSNCYHRE-GHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAV  191 (463)
Q Consensus       123 ~g~~~~y~i~~~~~l~~i~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~  191 (463)
                      .-.++.+++..+|+...+....+.+.. +++++..+.+-+|.++.+++...+.....++.++..+.++.+
T Consensus       417 iil~~~FfvTSaDS~s~vi~~~ss~g~~~~~~p~~~~rifW~v~~g~va~~LL~~ggl~aLQ~~~ii~al  486 (509)
T 2wsw_A          417 FILCFIATVTLINACSYTLAMSTCRSMKEGADPPLLVRIGWSVLVGIIGIILLALGGLKPIQTAIIAGGC  486 (509)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHBCCCCTTCCCCHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHcCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence            345568889999999888877665431 233455667778888777776666555667777776655443


No 9  
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=27.69  E-value=4.6e+02  Score=26.03  Aligned_cols=86  Identities=21%  Similarity=0.265  Sum_probs=53.5

Q ss_pred             HhHHHHHHHHHHhhHHHHHhhcccccCCCCcccccccchhHHHHHHHHHHhhcCCC---ccchhhHHHHHHHHHHHHHHH
Q 012458          123 YGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPD---FHNIQSLSVIAAVMSFAYSFI  199 (463)
Q Consensus       123 ~g~~~~y~i~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~---l~~l~~~s~~~~~~~~~~~~i  199 (463)
                      ...++.+++..+|+...+....+...  +.++..+.+-+|.++.+++..-|.....   ++.++..+.++.+= +.++.+
T Consensus       418 iili~~FfvTSaDS~s~vl~~~ss~g--~~~p~~~~rifWgv~~g~va~~LL~~GG~~~L~aLQt~~ii~alP-f~~v~l  494 (539)
T 4ain_A          418 MILLGTFFITSADSASTVMGTMSQHG--QLEANKWVTAAWGVATAAIGLTLLLSGGDNALSNLQNVTIVAATP-FLFVVI  494 (539)
T ss_dssp             HHHHHHHHHTTTHHHHHHHHHHHTTT--CSSCCHHHHHHHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHH-HHHHHH
T ss_pred             HHHHHHHHHHccchHHHHHHHHHcCC--CCCCCcchhhHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHhH-HHHHHH
Confidence            34556788888888888877665432  3345556778888888887777777665   77777776655433 222233


Q ss_pred             HHHHHHHHHhcC
Q 012458          200 GFGLGVAKVIGN  211 (463)
Q Consensus       200 ~~~~~~~~~~~~  211 (463)
                      .+..++++..+.
T Consensus       495 lm~~sl~k~l~~  506 (539)
T 4ain_A          495 GLMFALVKDLSN  506 (539)
T ss_dssp             THHHHHHHHHTT
T ss_pred             HHHHHHHHHHHh
Confidence            334566666653


No 10 
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=25.53  E-value=3.5e+02  Score=25.56  Aligned_cols=48  Identities=15%  Similarity=0.003  Sum_probs=39.3

Q ss_pred             ccHHHHHHHHcccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHhh
Q 012458           96 RSYLEAVDMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKS  143 (463)
Q Consensus        96 ~~y~~l~~~~~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~~  143 (463)
                      ....++.+..+|+.+..++.+...+..+++..+.....+..+..+..+
T Consensus       258 ~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~d  305 (444)
T 3gia_A          258 NALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKD  305 (444)
T ss_dssp             GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred             hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            356788888889888888888888888998888888888888777654


Done!