Query 012458
Match_columns 463
No_of_seqs 134 out of 1199
Neff 9.4
Searched_HMMs 13730
Date Mon Mar 25 09:50:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012458.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012458hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2a65a1 f.54.1.1 (A:5-513) Na( 89.7 8.2 0.0006 36.2 30.2 108 28-142 5-117 (509)
2 d1jb0l_ f.31.1.1 (L:) Photosys 19.3 92 0.0067 23.0 5.3 25 234-258 123-147 (151)
3 d1rh5b_ f.23.28.1 (B:) Preprot 10.3 88 0.0064 19.0 2.4 28 262-293 18-45 (56)
4 d2h8pc1 f.14.1.1 (C:22-78) Pot 6.1 2.7E+02 0.02 16.6 3.4 11 203-213 23-33 (57)
5 d1r3jc_ f.14.1.1 (C:) Potassiu 3.8 5.3E+02 0.038 16.8 4.2 25 315-339 65-89 (103)
6 d1ppjc1 f.32.1.1 (C:261-379) M 3.2 5.1E+02 0.037 17.9 3.6 22 392-416 24-46 (119)
7 d3cx5c1 f.32.1.1 (C:262-385) M 3.1 5.5E+02 0.04 17.8 3.8 15 392-406 24-39 (124)
8 d1mv8a2 c.2.1.6 (A:1-202) GDP- 3.1 2.1E+02 0.015 21.8 1.4 15 40-54 4-18 (202)
9 d1v54d_ f.23.1.1 (D:) Mitochon 3.1 5.7E+02 0.041 18.4 3.8 41 252-295 63-103 (144)
10 d1q90b_ f.21.1.2 (B:) Cytochro 2.8 9.7E+02 0.071 18.2 5.4 25 269-293 112-136 (212)
No 1
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=89.71 E-value=8.2 Score=36.17 Aligned_cols=108 Identities=13% Similarity=0.056 Sum_probs=60.9
Q ss_pred chHHHHHHHHHhhccccch-hhHHHHHH-HhC---hhHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCCCCccccHHHHH
Q 012458 28 GTLWTAVAHIITGVIGSGV-LSLAWSMA-QLG---WIAGPLAMVIFASVTLFATFLLCDCHRGPDPEYGPGRNRSYLEAV 102 (463)
Q Consensus 28 ~s~~~a~~~l~~~~iG~Gi-L~LP~~f~-~~G---~~~gii~li~~~~~s~~t~~ll~~~~~~~~~~~~~~~~~~y~~l~ 102 (463)
.|.++-++..++..+|.|- .-.||-.. +.| +++=++.+++++.=..+-=..+-|..++. ....+..+.
T Consensus 5 ~s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~g-------~i~~~~~i~ 77 (509)
T d2a65a1 5 ATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQ-------GHGTTPAIF 77 (509)
T ss_dssp SCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-------TCCSHHHHH
T ss_pred CChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-------cccHHHHHH
Confidence 4556778888899999964 44899875 445 33334444444443333333344443331 445777777
Q ss_pred HHHcccccchhhHHHHHHHHHhHHHHHHHHHHhhHHHHHh
Q 012458 103 DMCLGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQK 142 (463)
Q Consensus 103 ~~~~G~~g~~~~~~~~~~~~~g~~~~y~i~~~~~l~~i~~ 142 (463)
....+.+....+.....+.++..++-|.+..+-.+..+.+
T Consensus 78 ~~~~~~~~~~giG~~~~~~~~~i~~yy~vi~~w~l~Y~~~ 117 (509)
T d2a65a1 78 YLLWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIK 117 (509)
T ss_dssp HHHSCSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCcchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7766543333344455555556666677666666554443
No 2
>d1jb0l_ f.31.1.1 (L:) Photosystem I reaction center subunit XI, PsaL {Synechococcus elongatus [TaxId: 32046]}
Probab=19.32 E-value=92 Score=23.03 Aligned_cols=25 Identities=12% Similarity=0.185 Sum_probs=18.5
Q ss_pred HHHHHHHHhhcccceeehhhhhhcC
Q 012458 234 AQALGDIAFAYPYSLILIEIQDTLK 258 (463)
Q Consensus 234 ~~~~~~~~faf~~~~~~~~i~~~m~ 258 (463)
+...|-..|||..-.+.+-+..-|+
T Consensus 123 ~Gg~GGa~fAy~Ll~n~~~~d~i~~ 147 (151)
T d1jb0l_ 123 VGAMGSAFVAFFLLENFLVVDGIMT 147 (151)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred hccccHHHHHHHHHcchHHHHHHHH
Confidence 4588889999988777666665554
No 3
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=10.33 E-value=88 Score=19.00 Aligned_cols=28 Identities=14% Similarity=0.261 Sum_probs=16.9
Q ss_pred ccccchhhhhHHHHHHHHHHHHHHhhhhhhhc
Q 012458 262 PANQTMKKASTMSIITTTIFYLFCGGFGYAAF 293 (463)
Q Consensus 262 ~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~f 293 (463)
|+++.++++..++. +=..++|+.||..+
T Consensus 18 P~~~Ef~~ia~v~~----iG~~i~G~IGf~I~ 45 (56)
T d1rh5b_ 18 PTKDEYLAVAKVTA----LGISLLGIIGYIIH 45 (56)
T ss_dssp CCHHHHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 47788888765443 33445666666544
No 4
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=6.10 E-value=2.7e+02 Score=16.63 Aligned_cols=11 Identities=18% Similarity=0.039 Sum_probs=4.9
Q ss_pred HHHHHHhcCCc
Q 012458 203 LGVAKVIGNGF 213 (463)
Q Consensus 203 ~~~~~~~~~~~ 213 (463)
..+.+..+++.
T Consensus 23 s~~~y~~E~~~ 33 (57)
T d2h8pc1 23 SYLAVLAERGA 33 (57)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHhcCC
Confidence 33444455543
No 5
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=3.78 E-value=5.3e+02 Score=16.84 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhhhhccccchHHH
Q 012458 315 DLANAFIVIHLVGGYQVYSQPIFAH 339 (463)
Q Consensus 315 ~~~~~~~~i~~~~s~pl~~~p~~~~ 339 (463)
...|++..+..+.+..+...+....
T Consensus 65 ~~gr~~~~~~~~~Gi~~~~~~~~~i 89 (103)
T d1r3jc_ 65 LWGRCVAVVVMVAGITSFGLVTAAL 89 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555554444444333
No 6
>d1ppjc1 f.32.1.1 (C:261-379) Mitochondrial cytochrome b subunit, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.20 E-value=5.1e+02 Score=17.88 Aligned_cols=22 Identities=18% Similarity=0.451 Sum_probs=12.1
Q ss_pred CCc-hHHHHHHhhhhhhhhhHhhhhh
Q 012458 392 FPY-FNQVLGVIGGVIFWPLTIYFPV 416 (463)
Q Consensus 392 vp~-~~~v~~l~Ga~~~~~l~filP~ 416 (463)
+|| ++-++.+.+++. +-+.+|-
T Consensus 24 ipnK~gGvl~m~~si~---il~~lP~ 46 (119)
T d1ppjc1 24 IPNKLGGVLALAFSIL---ILALIPL 46 (119)
T ss_dssp CSSHHHHHHHHHHHHH---GGGTHHH
T ss_pred CCchhHHHHHHHHHHH---HHHHHHH
Confidence 676 666666665543 3444444
No 7
>d3cx5c1 f.32.1.1 (C:262-385) Mitochondrial cytochrome b subunit, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.15 E-value=5.5e+02 Score=17.79 Aligned_cols=15 Identities=13% Similarity=0.410 Sum_probs=8.5
Q ss_pred CCc-hHHHHHHhhhhh
Q 012458 392 FPY-FNQVLGVIGGVI 406 (463)
Q Consensus 392 vp~-~~~v~~l~Ga~~ 406 (463)
+|| .+-++.+.+|+.
T Consensus 24 iP~k~~Gvl~~~~si~ 39 (124)
T d3cx5c1 24 IPDKLLGVITMFAAIL 39 (124)
T ss_dssp SSSHHHHHHHHHHHHH
T ss_pred CCcchhhhHHHHHHHH
Confidence 565 555666555543
No 8
>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=3.10 E-value=2.1e+02 Score=21.84 Aligned_cols=15 Identities=13% Similarity=0.284 Sum_probs=11.8
Q ss_pred hccccchhhHHHHHH
Q 012458 40 GVIGSGVLSLAWSMA 54 (463)
Q Consensus 40 ~~iG~GiL~LP~~f~ 54 (463)
+++|.|-+++|.|..
T Consensus 4 ~ViGlG~vGl~~a~~ 18 (202)
T d1mv8a2 4 SIFGLGYVGAVCAGC 18 (202)
T ss_dssp EEECCSTTHHHHHHH
T ss_pred EEECCCHhHHHHHHH
Confidence 578999999888743
No 9
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.05 E-value=5.7e+02 Score=18.42 Aligned_cols=41 Identities=10% Similarity=-0.015 Sum_probs=23.9
Q ss_pred hhhhhcCCCCccccchhhhhHHHHHHHHHHHHHHhhhhhhhccC
Q 012458 252 EIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGD 295 (463)
Q Consensus 252 ~i~~~m~~p~~~~~~~~~~~~~a~~~~~~~y~~~g~~gy~~fg~ 295 (463)
+-..+|++|+ ...++++..++..+.+-.+++...-..++++
T Consensus 63 ~t~ae~~~p~---gewK~v~g~~~~~i~~s~~i~~~~r~~v~p~ 103 (144)
T d1v54d_ 63 ESFAEMNRST---NEWKTVVGAAMFFIGFTALLLIWEKHYVYGP 103 (144)
T ss_dssp SCHHHHTCCC---SHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred cccccccCCC---CchhHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3466888763 5677777666555555555555544445544
No 10
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.81 E-value=9.7e+02 Score=18.18 Aligned_cols=25 Identities=12% Similarity=0.126 Sum_probs=17.2
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhhhc
Q 012458 269 KASTMSIITTTIFYLFCGGFGYAAF 293 (463)
Q Consensus 269 ~~~~~a~~~~~~~y~~~g~~gy~~f 293 (463)
......-.+..++-+..|+.||..=
T Consensus 112 e~~W~~Gv~l~~l~m~~aftGY~Lp 136 (212)
T d1q90b_ 112 ELTWVTGVIMAVCTVSFGVTGYSLP 136 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cceehHhHHHHHHHHHHHHhhhhcc
Confidence 4555555666677778888899743
Done!