BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012460
(463 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|242068927|ref|XP_002449740.1| hypothetical protein SORBIDRAFT_05g022410 [Sorghum bicolor]
gi|241935583|gb|EES08728.1| hypothetical protein SORBIDRAFT_05g022410 [Sorghum bicolor]
Length = 228
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 43/65 (66%)
Query: 399 AKYNVVLRMLLRKPRYFDPPGWNSETCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWK 458
A N+VLR LLR PRYFDP +TC NC +E H AA C M+K+ KPCF+CG F H K
Sbjct: 159 ASDNMVLRKLLRIPRYFDPGETLLDTCFNCSEEGHVAANCPMEKRKKPCFVCGLFGHNAK 218
Query: 459 NCKQV 463
C QV
Sbjct: 219 QCTQV 223
>gi|115485975|ref|NP_001068131.1| Os11g0573200 [Oryza sativa Japonica Group]
gi|113645353|dbj|BAF28494.1| Os11g0573200, partial [Oryza sativa Japonica Group]
Length = 129
Score = 84.3 bits (207), Expect = 1e-13, Method: Composition-based stats.
Identities = 36/62 (58%), Positives = 42/62 (67%)
Query: 402 NVVLRMLLRKPRYFDPPGWNSETCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCK 461
N+VLR LLR PRYFDP ETC NCG+E H A C M+K+ +PCF+CG F H K C
Sbjct: 37 NIVLRKLLRIPRYFDPGETLLETCFNCGEEGHVAVNCPMEKRKRPCFVCGLFGHNSKQCT 96
Query: 462 QV 463
QV
Sbjct: 97 QV 98
>gi|414591598|tpg|DAA42169.1| TPA: hypothetical protein ZEAMMB73_148737 [Zea mays]
Length = 226
Score = 82.4 bits (202), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 42/63 (66%)
Query: 401 YNVVLRMLLRKPRYFDPPGWNSETCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNC 460
+++ LR LLR PRYFDP ETC NC +E H AA C M K+ KPCF+CG F H K C
Sbjct: 153 HSMFLRKLLRIPRYFDPGETLLETCFNCSEEGHVAANCPMGKRKKPCFVCGLFGHNAKQC 212
Query: 461 KQV 463
KQV
Sbjct: 213 KQV 215
>gi|222616180|gb|EEE52312.1| hypothetical protein OsJ_34326 [Oryza sativa Japonica Group]
Length = 800
Score = 81.6 bits (200), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 41/61 (67%)
Query: 402 NVVLRMLLRKPRYFDPPGWNSETCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCK 461
N+VLR LLR PRYFDP ETC NCG+E H A C M+K+ +PCF+CG F H K C
Sbjct: 197 NIVLRKLLRIPRYFDPGETLLETCFNCGEEGHVAVNCPMEKRKRPCFVCGLFGHNSKQCT 256
Query: 462 Q 462
Q
Sbjct: 257 Q 257
>gi|224132214|ref|XP_002328213.1| predicted protein [Populus trichocarpa]
gi|222837728|gb|EEE76093.1| predicted protein [Populus trichocarpa]
Length = 683
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 51/84 (60%), Gaps = 6/84 (7%)
Query: 383 VIEAKDKVEDA-RKENEAKYNVVLRMLLRKPRYFDPP--GWNSETCSNCGKENHTAATCK 439
+EA + VE +E NVVLR LLR PRYFDPP GW+ TC NCG+E H A C
Sbjct: 155 AVEAAELVESGGATADEESVNVVLRKLLRGPRYFDPPDSGWS--TCYNCGEEGHMAVNCP 212
Query: 440 M-QKQNKPCFLCGSFKHRWKNCKQ 462
K+ KPCF+CGS +H K C +
Sbjct: 213 TPMKKIKPCFVCGSLEHGAKQCSK 236
>gi|147828626|emb|CAN73043.1| hypothetical protein VITISV_005152 [Vitis vinifera]
Length = 513
Score = 81.3 bits (199), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 41/61 (67%), Gaps = 4/61 (6%)
Query: 402 NVVLRMLLRKPRYFDPP--GWNSETCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKN 459
N+VLR LLR PRYFDPP GW + C NCG+E H A C K+ KPCF+CGS +H K
Sbjct: 229 NIVLRKLLRGPRYFDPPDSGWGA--CYNCGEEGHNAVNCASVKRKKPCFVCGSLEHNAKQ 286
Query: 460 C 460
C
Sbjct: 287 C 287
>gi|218185703|gb|EEC68130.1| hypothetical protein OsI_36043 [Oryza sativa Indica Group]
Length = 492
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 41/61 (67%)
Query: 402 NVVLRMLLRKPRYFDPPGWNSETCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCK 461
N+VLR LLR PRYFDP ETC NCG+E H A C M+K+ +PCF+CG F H K C
Sbjct: 160 NIVLRKLLRIPRYFDPGETLLETCFNCGEEGHVAVNCPMEKRKRPCFVCGLFGHNSKQCT 219
Query: 462 Q 462
Q
Sbjct: 220 Q 220
>gi|359479082|ref|XP_002272646.2| PREDICTED: uncharacterized protein LOC100259916 [Vitis vinifera]
Length = 481
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 41/61 (67%), Gaps = 4/61 (6%)
Query: 402 NVVLRMLLRKPRYFDPP--GWNSETCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKN 459
N+VLR LLR PRYFDPP GW + C NCG+E H A C K+ KPCF+CGS +H K
Sbjct: 152 NIVLRKLLRGPRYFDPPDSGWGA--CYNCGEEGHNAVNCASVKRKKPCFVCGSLEHNAKQ 209
Query: 460 C 460
C
Sbjct: 210 C 210
>gi|357156367|ref|XP_003577432.1| PREDICTED: uncharacterized protein LOC100831383 isoform 2
[Brachypodium distachyon]
Length = 464
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 40/61 (65%)
Query: 402 NVVLRMLLRKPRYFDPPGWNSETCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCK 461
N VLR LLR PRYFDP ETC NCG+E H A C M+K+ KPCF+CG F H K C
Sbjct: 148 NTVLRKLLRIPRYFDPGETILETCFNCGEEGHVATNCTMEKRKKPCFICGLFGHIAKQCT 207
Query: 462 Q 462
Q
Sbjct: 208 Q 208
>gi|357156364|ref|XP_003577431.1| PREDICTED: uncharacterized protein LOC100831383 isoform 1
[Brachypodium distachyon]
Length = 476
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 40/61 (65%)
Query: 402 NVVLRMLLRKPRYFDPPGWNSETCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCK 461
N VLR LLR PRYFDP ETC NCG+E H A C M+K+ KPCF+CG F H K C
Sbjct: 146 NTVLRKLLRIPRYFDPGETILETCFNCGEEGHVATNCTMEKRKKPCFICGLFGHIAKQCT 205
Query: 462 Q 462
Q
Sbjct: 206 Q 206
>gi|326505632|dbj|BAJ95487.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 480
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 40/61 (65%)
Query: 402 NVVLRMLLRKPRYFDPPGWNSETCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCK 461
N VLR LLR PRYFDP ETC NCG+E H A C M+K+ KPCF+CG F H K C
Sbjct: 151 NTVLRKLLRIPRYFDPGETILETCFNCGEEGHVAVNCPMEKRKKPCFVCGLFGHNAKQCT 210
Query: 462 Q 462
Q
Sbjct: 211 Q 211
>gi|164605537|dbj|BAF98603.1| CM0545.270.nc [Lotus japonicus]
Length = 259
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 43/65 (66%), Gaps = 6/65 (9%)
Query: 402 NVVLRMLLRKPRYFDPP---GWNSETCSNCGKENHTAATCKMQKQ-NKPCFLCGSFKHRW 457
NVVLR LLR PRY+DPP GW ETC NCG+E H C K+ KPC+LCGS H+
Sbjct: 41 NVVLRKLLRGPRYYDPPADCGW--ETCYNCGEEGHATVKCAAAKELKKPCYLCGSLMHQA 98
Query: 458 KNCKQ 462
K CK+
Sbjct: 99 KRCKK 103
>gi|296084007|emb|CBI24395.3| unnamed protein product [Vitis vinifera]
Length = 441
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 41/61 (67%), Gaps = 4/61 (6%)
Query: 402 NVVLRMLLRKPRYFDPP--GWNSETCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKN 459
N+VLR LLR PRYFDPP GW + C NCG+E H A C K+ KPCF+CGS +H K
Sbjct: 103 NIVLRKLLRGPRYFDPPDSGWGA--CYNCGEEGHNAVNCASVKRKKPCFVCGSLEHNAKQ 160
Query: 460 C 460
C
Sbjct: 161 C 161
>gi|449532848|ref|XP_004173390.1| PREDICTED: DNA-binding protein HEXBP-like, partial [Cucumis
sativus]
Length = 425
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Query: 402 NVVLRMLLRKPRYFDPP-GWNSETCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNC 460
N V R LLR PRYFDPP W TC NCG+E H A CK K+ +PCF+CGS +H K+C
Sbjct: 166 NNVFRKLLRGPRYFDPPDSWG--TCYNCGEEGHNAVNCKSAKRKRPCFVCGSLEHNAKSC 223
Query: 461 KQV 463
+
Sbjct: 224 SKA 226
>gi|449439166|ref|XP_004137358.1| PREDICTED: cold shock domain-containing protein 3-like [Cucumis
sativus]
Length = 406
Score = 78.2 bits (191), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Query: 402 NVVLRMLLRKPRYFDPP-GWNSETCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNC 460
N V R LLR PRYFDPP W TC NCG+E H A CK K+ +PCF+CGS +H K+C
Sbjct: 166 NNVFRKLLRGPRYFDPPDSWG--TCYNCGEEGHNAVNCKSAKRKRPCFVCGSLEHNAKSC 223
Query: 461 KQV 463
+
Sbjct: 224 SKA 226
>gi|413925352|gb|AFW65284.1| hypothetical protein ZEAMMB73_494862 [Zea mays]
Length = 515
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/64 (56%), Positives = 42/64 (65%)
Query: 399 AKYNVVLRMLLRKPRYFDPPGWNSETCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWK 458
A N+VLR LLR PRYFDP ETC NC +E H AA C ++K+ KPCF+CG F H K
Sbjct: 150 ASDNMVLRKLLRIPRYFDPGETLLETCFNCSEEGHVAANCPLEKRKKPCFVCGLFGHNAK 209
Query: 459 NCKQ 462
C Q
Sbjct: 210 QCTQ 213
>gi|326516278|dbj|BAJ92294.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 480
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 39/61 (63%)
Query: 402 NVVLRMLLRKPRYFDPPGWNSETCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCK 461
N VLR LLR P YFDP ETC NCG+E H A C M+K+ KPCF+CG F H K C
Sbjct: 151 NTVLRKLLRIPGYFDPGETILETCFNCGEEGHVAVNCPMEKRKKPCFVCGLFGHNAKQCT 210
Query: 462 Q 462
Q
Sbjct: 211 Q 211
>gi|226495087|ref|NP_001142114.1| hypothetical protein [Zea mays]
gi|194707178|gb|ACF87673.1| unknown [Zea mays]
gi|414591597|tpg|DAA42168.1| TPA: hypothetical protein ZEAMMB73_148737 [Zea mays]
Length = 482
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/62 (56%), Positives = 41/62 (66%)
Query: 401 YNVVLRMLLRKPRYFDPPGWNSETCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNC 460
+++ LR LLR PRYFDP ETC NC +E H AA C M K+ KPCF+CG F H K C
Sbjct: 153 HSMFLRKLLRIPRYFDPGETLLETCFNCSEEGHVAANCPMGKRKKPCFVCGLFGHNAKQC 212
Query: 461 KQ 462
KQ
Sbjct: 213 KQ 214
>gi|359481085|ref|XP_002266540.2| PREDICTED: uncharacterized protein LOC100252970 [Vitis vinifera]
Length = 248
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 41/62 (66%)
Query: 402 NVVLRMLLRKPRYFDPPGWNSETCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCK 461
N+VL+ LL+ PR FDPP + C N +E TA C +KQ KPCFLCGSFKH +CK
Sbjct: 132 NIVLQKLLQAPRCFDPPESSWRMCHNSEEEAPTAVACSAEKQKKPCFLCGSFKHSGNHCK 191
Query: 462 QV 463
Q+
Sbjct: 192 QI 193
Score = 47.4 bits (111), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Query: 166 AKLDEYEKISDLSGFDNLKAMIEAEAFMRRKKRNRKRKKRE-IEFCGQEDVSVSAEEEKG 224
+ LDE++ +SDLS F NL AM+EAEAFMR KK ++RKK+ +EF ++V + E+
Sbjct: 49 SSLDEFKMLSDLSNFKNLAAMMEAEAFMRCKKSKKRRKKKRNMEFEAPFPINVDSVREQK 108
Query: 225 QLDKSQPLKVVEVSKPESV 243
Q+D + + V++ + ES+
Sbjct: 109 QVDTCKSVDTVKLFQIESI 127
>gi|255573261|ref|XP_002527559.1| cellular nucleic acid binding protein, putative [Ricinus communis]
gi|223533051|gb|EEF34811.1| cellular nucleic acid binding protein, putative [Ricinus communis]
Length = 497
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 41/66 (62%), Gaps = 5/66 (7%)
Query: 398 EAKYNVVLRMLLRKPRYFDPP--GWNSETCSNCGKENHTAATC-KMQKQNKPCFLCGSFK 454
E N+VLR LLR PRYFD P GW+ TC NCGKE H A C +K+ KPCFLCG
Sbjct: 157 EVAQNMVLRKLLRGPRYFDSPDSGWS--TCFNCGKEGHMAVNCPSFEKKRKPCFLCGGLD 214
Query: 455 HRWKNC 460
H K C
Sbjct: 215 HGVKQC 220
>gi|224102939|ref|XP_002312862.1| predicted protein [Populus trichocarpa]
gi|222849270|gb|EEE86817.1| predicted protein [Populus trichocarpa]
Length = 640
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/95 (44%), Positives = 56/95 (58%), Gaps = 6/95 (6%)
Query: 373 QQKKRRKKTRVIEAKDKVEDARKEN-EAKYNVVLRMLLRKPRYFDP--PGWNSETCSNCG 429
++ ++ +K V EA + VED E N+VLR LLR PRYFD GW++ C NCG
Sbjct: 143 EKAEKSEKVEVDEAAELVEDGGANAVEDSVNIVLRKLLRGPRYFDTLDSGWSN--CYNCG 200
Query: 430 KENHTAATC-KMQKQNKPCFLCGSFKHRWKNCKQV 463
+E H A C K+ KPCF+CGS +H K C +V
Sbjct: 201 EEGHMAVNCPTFTKKIKPCFVCGSLEHGAKQCTKV 235
>gi|356547869|ref|XP_003542327.1| PREDICTED: uncharacterized protein LOC100780476 [Glycine max]
Length = 529
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 39/62 (62%)
Query: 402 NVVLRMLLRKPRYFDPPGWNSETCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCK 461
N+VLR LLR PRYFDPP + C NCG+E H A C K+ KPC++CG H + C
Sbjct: 140 NMVLRKLLRGPRYFDPPDNSWGACFNCGEEGHAAVNCSAVKRKKPCYVCGCLGHNARQCS 199
Query: 462 QV 463
+V
Sbjct: 200 KV 201
>gi|357493439|ref|XP_003617008.1| Cellular nucleic acid-binding protein [Medicago truncatula]
gi|355518343|gb|AES99966.1| Cellular nucleic acid-binding protein [Medicago truncatula]
Length = 638
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 36/57 (63%), Gaps = 5/57 (8%)
Query: 402 NVVLRMLLRKPRYFDPPG---WNSETCSNCGKENHTAATCKMQKQNKPCFLCGSFKH 455
N VLR LLR PRYFDPP W TC NCG+E H + C K+ KPCF+CGS H
Sbjct: 259 NTVLRKLLRGPRYFDPPSDNVWG--TCYNCGEEGHASFNCTAAKRKKPCFVCGSLSH 313
>gi|356574813|ref|XP_003555539.1| PREDICTED: uncharacterized protein LOC100794448 [Glycine max]
Length = 533
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 39/63 (61%)
Query: 401 YNVVLRMLLRKPRYFDPPGWNSETCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNC 460
+N+VLR LLR PRYFDPP + C NCG++ H A C K+ KPC++CG H + C
Sbjct: 143 HNMVLRKLLRGPRYFDPPDSSWGACFNCGEDGHAAVNCSAAKRKKPCYVCGGLGHNARQC 202
Query: 461 KQV 463
+
Sbjct: 203 TKA 205
>gi|255634708|gb|ACU17716.1| unknown [Glycine max]
Length = 389
Score = 70.5 bits (171), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 38/61 (62%)
Query: 403 VVLRMLLRKPRYFDPPGWNSETCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQ 462
+VLR LLR PRYFDPP + C NCG+E H A C K+ KPC++CG H + C +
Sbjct: 1 MVLRKLLRGPRYFDPPDNSWGACFNCGEEGHAAVNCSAVKRKKPCYVCGCLGHNARQCSK 60
Query: 463 V 463
V
Sbjct: 61 V 61
>gi|15229721|ref|NP_189945.1| zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana]
gi|9967508|emb|CAC05633.1| putative protein [Arabidopsis thaliana]
gi|20466716|gb|AAM20675.1| putative protein [Arabidopsis thaliana]
gi|25084296|gb|AAN72214.1| putative protein [Arabidopsis thaliana]
gi|332644290|gb|AEE77811.1| zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana]
Length = 551
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/80 (47%), Positives = 49/80 (61%), Gaps = 7/80 (8%)
Query: 388 DKVE--DARKENEAKYNVVLRMLLRKPRYFDPP--GWNSETCSNCGKENHTAATCKMQ-K 442
D+VE D K E N+VL+ LLR RYFDPP GW S C +CG++ HT+ C K
Sbjct: 129 DEVERSDEPKTEETASNLVLKKLLRGARYFDPPDAGWVS--CYSCGEQGHTSFNCPTPTK 186
Query: 443 QNKPCFLCGSFKHRWKNCKQ 462
+ KPCF+CGS +H K C +
Sbjct: 187 RRKPCFICGSLEHGAKQCSK 206
>gi|297815456|ref|XP_002875611.1| hypothetical protein ARALYDRAFT_323091 [Arabidopsis lyrata subsp.
lyrata]
gi|297321449|gb|EFH51870.1| hypothetical protein ARALYDRAFT_323091 [Arabidopsis lyrata subsp.
lyrata]
Length = 556
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 392 DARKENEAKYNVVLRMLLRKPRYFDPP--GWNSETCSNCGKENHTAATCKMQ-KQNKPCF 448
D K E N+VL+ LLR RYFDPP GW S C +CG++ HT+ C K+ KPCF
Sbjct: 135 DEPKTEETSSNLVLKKLLRGARYFDPPDAGWVS--CYSCGEQGHTSFNCPTPTKRRKPCF 192
Query: 449 LCGSFKHRWKNC 460
+CGS +H K C
Sbjct: 193 ICGSLEHGAKQC 204
>gi|224138186|ref|XP_002322751.1| predicted protein [Populus trichocarpa]
gi|222867381|gb|EEF04512.1| predicted protein [Populus trichocarpa]
Length = 265
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 55/158 (34%), Positives = 79/158 (50%), Gaps = 22/158 (13%)
Query: 314 MGKAVQTTATITGANDGVK-SVEMNNLYSLRLEDDKPLSDMRLGRRVEDTVSVGPIVGER 372
M + Q AT G N + V +++L ++ R V +TV +
Sbjct: 1 MVEMTQALATTNGVNSSIAIGVSLSSLEG----------NISFCRGVAETVPAETFI-VN 49
Query: 373 QQKKRRKKTRVIEAKDKVEDA-----RKENEAKYNVVLRMLLRKPRYFDPPGWNS-ETCS 426
K++RK R +K+ ED R++ E N+VLR LLR+ RYFD P +NS E CS
Sbjct: 50 AMKQKRKVDRA--SKEMQEDTAKGMEREQVEFTDNIVLRQLLRRTRYFDGPSYNSWEMCS 107
Query: 427 NCGKENHTAATCKMQKQNKP--CFLCGSFKHRWKNCKQ 462
NCG+E H CKM+K+ K CFLC S H + C++
Sbjct: 108 NCGQEGHMVCQCKMRKRKKKKLCFLCESLDHIGRRCRK 145
>gi|15229296|ref|NP_189935.1| Zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana]
gi|7288027|emb|CAB81789.1| hypothetical protein [Arabidopsis thaliana]
gi|332644278|gb|AEE77799.1| Zinc knuckle (CCHC-type) family protein [Arabidopsis thaliana]
Length = 260
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 386 AKDKVEDARKENEAKYNVVLRMLLRKPRYFDP--PGWNSETCSNCGKENHTAATC-KMQK 442
+D V ++ E N V+ LLR RYFDP GW TC +CG+++H +C +
Sbjct: 106 VEDVVRGEEEDGETTSNSVMTKLLRGARYFDPLDAGW--VTCYSCGEKDHITVSCPTLTN 163
Query: 443 QNKPCFLCGSFKHRWKNCKQV 463
K CF+C S +H + C +V
Sbjct: 164 CRKSCFICASLEHGARQCTKV 184
>gi|168009954|ref|XP_001757670.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691364|gb|EDQ77727.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 106
Score = 53.9 bits (128), Expect = 2e-04, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 423 ETCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQ 462
ETC NCG++ H AA C Q + KPC++CG+F H +C +
Sbjct: 1 ETCYNCGQQGHWAAECTKQAREKPCYVCGNFGHFSYDCPE 40
>gi|296089311|emb|CBI39083.3| unnamed protein product [Vitis vinifera]
Length = 686
Score = 52.0 bits (123), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 63/105 (60%)
Query: 156 REEKRRRANRAKLDEYEKISDLSGFDNLKAMIEAEAFMRRKKRNRKRKKREIEFCGQEDV 215
R+ K+ + LDE++ +SDLS F NL AM+EAEAF+R+KK R++KK++IEF Q+++
Sbjct: 283 RQCKKNEEVMSSLDEFKMLSDLSNFKNLAAMMEAEAFLRKKKIKRRKKKKKIEFEAQDEI 342
Query: 216 SVSAEEEKGQLDKSQPLKVVEVSKPESVLTTEMDGSRHLFIDPAK 260
+V + Q D + + + + SV +E LF+D K
Sbjct: 343 TVDVGPGQEQPDTVKAVTTAKAVEAGSVSVSENINPEKLFVDEVK 387
Score = 44.3 bits (103), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 84/263 (31%), Positives = 128/263 (48%), Gaps = 43/263 (16%)
Query: 15 EKEEGNGSKEKNIERGVAAKSKLDEYKEISDLTGFDNLKAMILAESIMKRKKKRNRKKKK 74
+KE G ++ ++ S LDE+K +SDL+ F NL AM+ AE+ +++KK + RKKKK
Sbjct: 273 DKERGLQKPKRQCKKNEEVMSSLDEFKMLSDLSNFKNLAAMMEAEAFLRKKKIKRRKKKK 332
Query: 75 KDKTKL-DSLYREVADLTGFE---NLKAMIEAEAPMRRKSSERMRGNLETQFCAQENDTV 130
K + + D + +V G E +KA+ A+A S N E F D V
Sbjct: 333 KIEFEAQDEITVDVG--PGQEQPDTVKAVTTAKAVEAGSVSVSENINPEKLFV----DEV 386
Query: 131 NVAEEQGQLGEDDGLNKVEETE-----RNGREEKRRRANRAKLDEYEKIS---------- 175
+ + D + K ETE +N EK +N K+DE E+IS
Sbjct: 387 KAGVQPSSIKAVD-MRKASETESVSVTKNIVSEKLFVSN-FKIDE-ERISQEAQKKCTKN 443
Query: 176 --------------DLSGFDNLKAMIEAEAFMRRKKRNRKRKKRE-IEFCGQEDVSVSAE 220
DLS F NL AM+EAEAFMR KK ++RKK+ +EF ++V +
Sbjct: 444 EEVMSSLDEFKMLSDLSNFKNLAAMMEAEAFMRCKKSKKRRKKKRNMEFEAPFPINVDSV 503
Query: 221 EEKGQLDKSQPLKVVEVSKPESV 243
E+ Q+D + + V++ + ES+
Sbjct: 504 REQKQVDTCKSVDTVKLFQIESI 526
>gi|412994131|emb|CCO14642.1| predicted protein [Bathycoccus prasinos]
Length = 421
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 402 NVVLRMLLRKPRYFDPPGWNSET-CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNC 460
N +R +LR PRYFD + C CGK H C + + KPC LCG F H+ ++C
Sbjct: 136 NTTVREILRLPRYFDDDFEAAAMRCFRCGKGGHREFECTLPAKQKPCHLCGDFDHQARDC 195
Query: 461 KQ 462
+
Sbjct: 196 PK 197
>gi|270017203|gb|EFA13649.1| hypothetical protein TcasGA2_TC004984 [Tribolium castaneum]
Length = 765
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 11/108 (10%)
Query: 354 RLGRRVEDTVSVGPIVGERQQKKRRKKTRVIEAKDKVEDARKENEAKYNVVLRMLLRKPR 413
++GR ++ + +G + RQ + + + K K E+ KE + +V + R+
Sbjct: 577 KVGRLDQNEIQLGQL---RQNRGETQAATIRMVKKKAEEILKEKTIQVGMVRAQVERRVE 633
Query: 414 YFDPPGWNSETCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCK 461
C NC NH A+ C +K+NK C+ CG H K+CK
Sbjct: 634 VL--------RCFNCLGYNHKASECTKEKRNKSCYRCGGEDHMAKDCK 673
>gi|403183461|gb|EJY58114.1| AAEL017061-PA [Aedes aegypti]
Length = 961
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 421 NSETCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQ 462
+S C NCG+ H A C + Q CF CG HR K+C++
Sbjct: 292 DSVRCYNCGRRGHYANDCDTKSQGPKCFGCGEHGHRAKDCER 333
>gi|3342103|gb|AAD12146.1| gag protein [Simian immunodeficiency virus]
Length = 515
Score = 43.1 bits (100), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 424 TCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNC 460
TC NCGK HTA C+ +Q C+ CGS +HR+ C
Sbjct: 395 TCFNCGKPGHTARMCRQPRQEG-CWNCGSKEHRFAQC 430
>gi|308807348|ref|XP_003080985.1| E3 ubiquitin ligase interacting with arginine methyltransferase
(ISS) [Ostreococcus tauri]
gi|116059446|emb|CAL55153.1| E3 ubiquitin ligase interacting with arginine methyltransferase
(ISS) [Ostreococcus tauri]
Length = 276
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 405 LRMLLRKPRYFDPPGWNSET----CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNC 460
+R +LR+PRYFD + E C CG+ H A C++ + KPC LCG H ++C
Sbjct: 37 VRNILRQPRYFDD---DYEAAALRCFRCGQGGHREAECELPAKKKPCHLCGYKSHVARDC 93
Query: 461 KQ 462
Sbjct: 94 PH 95
>gi|6358690|gb|AAF07316.1|AF188114_1 Gag protein [Simian immunodeficiency virus]
Length = 512
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 424 TCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNC 460
TC NCGK HTA C+ +Q C+ CGS +HR+ C
Sbjct: 392 TCFNCGKPGHTARMCRQPRQEG-CWNCGSKEHRFAQC 427
>gi|6358699|gb|AAF07324.1|AF188115_1 Gag protein [Simian immunodeficiency virus]
Length = 512
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 424 TCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNC 460
TC NCGK HTA C+ +Q C+ CGS +HR+ C
Sbjct: 392 TCFNCGKPGHTARMCRQPRQEG-CWNCGSKEHRFAQC 427
>gi|110590781|pdb|2A51|A Chain A, Structure Of The (13-51) Domain Of The Nucleocapsid
Protein Ncp8 From Sivlhoest
Length = 39
Score = 42.4 bits (98), Expect = 0.47, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 424 TCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQ 462
TC NCGK HTA C+ +Q + C+ CGS +HR+ C +
Sbjct: 2 TCFNCGKPGHTARMCRQPRQ-EGCWNCGSKEHRFAQCPK 39
>gi|1150852|gb|AAB47723.1| Gag protein [Simian immunodeficiency virus]
Length = 522
Score = 42.4 bits (98), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNC 460
C NCGKE HTA CK ++ K C+ CG H+ KNC
Sbjct: 414 CFNCGKEGHTARNCKAPRR-KGCWRCGQEGHQLKNC 448
>gi|66824341|ref|XP_645525.1| hypothetical protein DDB_G0271832 [Dictyostelium discoideum AX4]
gi|60473665|gb|EAL71606.1| hypothetical protein DDB_G0271832 [Dictyostelium discoideum AX4]
Length = 772
Score = 42.4 bits (98), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 11/91 (12%)
Query: 377 RRKKTRVIEAKDKVEDARKENEAKYNVVL-------RMLLRKPRYFDPPGWNSETCSNCG 429
R+ + VI++ +K ED+ K N KY R + RY+ S C CG
Sbjct: 225 RQSTSSVIKSTEKEEDSLKIN-VKYGNDNNNNNKRKRQSVTTSRYY---MEESIKCERCG 280
Query: 430 KENHTAATCKMQKQNKPCFLCGSFKHRWKNC 460
+H + C + KPCF CG F H+ +C
Sbjct: 281 DHDHFSFECPHDIEEKPCFRCGEFGHQIASC 311
>gi|158295392|ref|XP_316189.4| AGAP006128-PA [Anopheles gambiae str. PEST]
gi|157016015|gb|EAA11249.5| AGAP006128-PA [Anopheles gambiae str. PEST]
Length = 1762
Score = 42.4 bits (98), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 407 MLLRKPRYFDPPGWNSETCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQV 463
LL K RY DPP CSNCG+ H C+ + C++CG HR C +
Sbjct: 855 YLLLKDRYPDPPR-KEIICSNCGERGHVRFKCRNAPKLVTCYMCGEQGHREPRCPKT 910
>gi|357129728|ref|XP_003566513.1| PREDICTED: uncharacterized protein LOC100839501 [Brachypodium
distachyon]
Length = 292
Score = 42.4 bits (98), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 27/63 (42%), Gaps = 10/63 (15%)
Query: 399 AKYNVVLRMLLRKPRYFDPPGWNSETCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWK 458
+N V R L PPG S C NCG E H A CK C+ CG H K
Sbjct: 116 GSFNYVGRSL--------PPG--SGRCFNCGIEGHWARDCKAGNWKNKCYRCGEMGHIEK 165
Query: 459 NCK 461
NC+
Sbjct: 166 NCQ 168
>gi|264687797|gb|ACY73889.1| gag protein [Small ruminant lentivirus]
Length = 242
Score = 41.6 bits (96), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 374 QKKRRKKTRVIEAKDKVEDARKENEAKYNV-VLRMLLRKPRYFDPPGWNSETCSNCGKEN 432
QK K + ++K++ R+ + Y + +L LR R D S+TC NCGK
Sbjct: 158 QKVLGTKAQTSTVEEKLQACREVESSTYKMQLLAQALRPAREKDT---KSQTCYNCGKPG 214
Query: 433 HTAATCKMQKQNKPCFLCGSFKHRWKNCKQ 462
H A C + K C+ CG H K+C+Q
Sbjct: 215 HLARQC---RSGKTCYKCGKKGHMQKDCRQ 241
>gi|333034125|gb|AEF12568.1| gag protein [Caprine arthritis encephalitis virus]
Length = 240
Score = 41.6 bits (96), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 374 QKKRRKKTRVIEAKDKVEDARKENEAKYNV-VLRMLLRKPRYFDPPGWNSETCSNCGKEN 432
QK K + ++K++ R+ + Y + +L LR R D S+TC NCGK
Sbjct: 152 QKVLGTKAQTSTVEEKLQACREVESSTYKMQLLAQALRPAREKDT---KSQTCYNCGKPG 208
Query: 433 HTAATCKMQKQNKPCFLCGSFKHRWKNCKQ 462
H A C + K C+ CG H K+C+Q
Sbjct: 209 HLARQC---RSGKTCYKCGKKGHMQKDCRQ 235
>gi|264687823|gb|ACY73902.1| gag protein [Small ruminant lentivirus]
Length = 242
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 374 QKKRRKKTRVIEAKDKVEDARKENEAKYNV-VLRMLLRKPRYFDPPGWNSETCSNCGKEN 432
QK K + ++K++ R+ + Y + +L LR R D G +TC NCGK
Sbjct: 158 QKVLGTKAQTSTVEEKLQACREVESSTYKMQLLAQALRPTREKDARG---QTCYNCGKPG 214
Query: 433 HTAATCKMQKQNKPCFLCGSFKHRWKNCKQ 462
H A C + K C+ CG H K+C+Q
Sbjct: 215 HLARQC---RSGKTCYKCGKKGHMQKDCRQ 241
>gi|308152396|emb|CBX25650.1| gag-pol polyprotein, intergenic region [Small ruminant lentivirus]
Length = 214
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 374 QKKRRKKTRVIEAKDKVEDARKENEAKYNVVLRMLLRKPRYFDPPGWNSETCSNCGKENH 433
QK KK + ++K++ R+ + Y +++L + R G +TC NCGK H
Sbjct: 128 QKVLGKKAQASTVEEKLQACREVESSTYK--MQLLAQALRPTGERGAKEQTCYNCGKPGH 185
Query: 434 TAATCKMQKQNKPCFLCGSFKHRWKNCKQ 462
A C + K C+ CG H K+C+Q
Sbjct: 186 LARQC---RSGKTCYKCGKRGHVQKDCRQ 211
>gi|264687807|gb|ACY73894.1| gag protein [Small ruminant lentivirus]
Length = 241
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 6/75 (8%)
Query: 388 DKVEDARKENEAKYNVVLRMLLRKPRYFDPPGWNSETCSNCGKENHTAATCKMQKQNKPC 447
DK++ R+ + Y + L +P + G +TC NCGK H A C + K C
Sbjct: 172 DKLQACREVESSTYKMQLLAQALRPTRGNAQG---QTCYNCGKPGHLARQC---RSGKTC 225
Query: 448 FLCGSFKHRWKNCKQ 462
+ CG H K+C+Q
Sbjct: 226 YKCGKKGHMQKDCRQ 240
>gi|264687805|gb|ACY73893.1| gag protein [Small ruminant lentivirus]
Length = 242
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 374 QKKRRKKTRVIEAKDKVEDARKENEAKYNV-VLRMLLRKPRYFDPPGWNSETCSNCGKEN 432
QK K + ++K++ R+ + Y + +L LR R D G +TC NCGK
Sbjct: 158 QKVLGTKAQTSTVEEKLQACREVESSTYKMQLLAQALRPTREKDARG---QTCYNCGKPG 214
Query: 433 HTAATCKMQKQNKPCFLCGSFKHRWKNCKQ 462
H A C + K C+ CG H K+C+Q
Sbjct: 215 HLARQC---RSGKTCYKCGKKGHMQKDCRQ 241
>gi|264687795|gb|ACY73888.1| gag protein [Small ruminant lentivirus]
Length = 242
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 374 QKKRRKKTRVIEAKDKVEDARKENEAKYNV-VLRMLLRKPRYFDPPGWNSETCSNCGKEN 432
QK K + ++K++ R+ + Y + +L LR R D G +TC NCGK
Sbjct: 158 QKVLGTKAQTSTVEEKLQACREVESSTYKMQLLAQALRPTREKDARG---QTCYNCGKPG 214
Query: 433 HTAATCKMQKQNKPCFLCGSFKHRWKNCKQ 462
H A C + K C+ CG H K+C+Q
Sbjct: 215 HLARQC---RSGKTCYKCGKKGHMQKDCRQ 241
>gi|255986838|gb|ACU50801.1| gag protein [Human immunodeficiency virus 1]
Length = 512
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNC 460
C NCGKE H A TCK ++ K C+ CG H+ K+C
Sbjct: 392 CFNCGKEGHIARTCKAPRK-KGCWKCGREGHQMKDC 426
>gi|264687803|gb|ACY73892.1| gag protein [Small ruminant lentivirus]
Length = 242
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 374 QKKRRKKTRVIEAKDKVEDARKENEAKYNV-VLRMLLRKPRYFDPPGWNSETCSNCGKEN 432
QK K + ++K++ R+ + Y + +L LR R D G +TC NCGK
Sbjct: 158 QKVLGTKAQTSPVEEKLQACREVESSTYKMQLLAQALRPTREKDARG---QTCYNCGKPG 214
Query: 433 HTAATCKMQKQNKPCFLCGSFKHRWKNCKQ 462
H A C + K C+ CG H K+C+Q
Sbjct: 215 HLARQC---RSGKTCYKCGRKGHMQKDCRQ 241
>gi|264687819|gb|ACY73900.1| gag protein [Small ruminant lentivirus]
Length = 242
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Query: 388 DKVEDARKENEAKYNV-VLRMLLRKPRYFDPPGWNSETCSNCGKENHTAATCKMQKQNKP 446
+K++ R+ + Y + +L LR R D G +TC NCGK H A C + K
Sbjct: 172 EKLQACREVESSTYKMQLLAQALRPTRETDARG---QTCYNCGKPGHLARQC---RSGKI 225
Query: 447 CFLCGSFKHRWKNCKQ 462
C+ CG H K+C+Q
Sbjct: 226 CYKCGKKGHLQKDCRQ 241
>gi|124389844|gb|ABN11104.1| gag protein [Human immunodeficiency virus 1]
Length = 454
Score = 40.8 bits (94), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNC 460
C NCGKE HTA CK ++ K C+ CG H+ K+C
Sbjct: 401 CFNCGKEGHTAKNCKAPRK-KGCWKCGREGHQMKDC 435
>gi|308152394|emb|CBX25649.1| gag-pol polyprotein, intergenic region [Small ruminant lentivirus]
Length = 214
Score = 40.8 bits (94), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 374 QKKRRKKTRVIEAKDKVEDARKENEAKYNVVLRMLLRKPRYFDPPGWNSETCSNCGKENH 433
QK KK + ++K++ R+ + Y +++L + R G +TC NCGK H
Sbjct: 128 QKVLGKKAQASTVEEKLQACREVESSTYK--MQLLAQALRPTGERGAKEQTCYNCGKPGH 185
Query: 434 TAATCKMQKQNKPCFLCGSFKHRWKNCKQ 462
A C + K C+ CG H K+C+Q
Sbjct: 186 LARQC---RSGKTCYKCGRKGHIQKDCRQ 211
>gi|264687813|gb|ACY73897.1| gag protein [Small ruminant lentivirus]
Length = 242
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Query: 388 DKVEDARKENEAKYNV-VLRMLLRKPRYFDPPGWNSETCSNCGKENHTAATCKMQKQNKP 446
+K++ R+ + Y + +L LR R D G +TC NCGK H A C + K
Sbjct: 172 EKLQACREVESSTYKMQLLAQALRPTREKDARG---QTCYNCGKPGHLARQC---RSGKT 225
Query: 447 CFLCGSFKHRWKNCKQ 462
C+ CG H K+C+Q
Sbjct: 226 CYKCGKKGHMQKDCRQ 241
>gi|396075557|gb|AFN81272.1| gag protein [Human immunodeficiency virus 1]
Length = 492
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNC 460
C NCGKE H A CK ++ K C+ CG HR K+C
Sbjct: 387 CFNCGKEGHLARNCKAPRK-KGCWKCGKEGHRMKDC 421
>gi|353257211|gb|AEQ75931.1| gag protein [Human immunodeficiency virus 1]
Length = 512
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCK 461
C NCGKE H A CK ++ K C+ CG H+ K+CK
Sbjct: 395 CFNCGKEGHLARNCKAPRR-KGCWKCGQEGHQMKDCK 430
>gi|264687809|gb|ACY73895.1| gag protein [Small ruminant lentivirus]
Length = 242
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Query: 388 DKVEDARKENEAKYNV-VLRMLLRKPRYFDPPGWNSETCSNCGKENHTAATCKMQKQNKP 446
+K++ R+ + Y + +L LR R D G +TC NCGK H A C + K
Sbjct: 172 EKLQACREVESSTYKMQLLAQALRPTREKDARG---QTCYNCGKPGHLARQC---RSGKT 225
Query: 447 CFLCGSFKHRWKNCKQ 462
C+ CG H K+C+Q
Sbjct: 226 CYKCGRKGHMQKDCRQ 241
>gi|257449255|gb|ACV53612.1| gag polyprotein [Caprine arthritis encephalitis virus]
Length = 442
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 422 SETCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQ 462
S+TC NCGK H A C + K C+ CG H K+C+Q
Sbjct: 379 SQTCYNCGKPGHLARQC---RSGKTCYKCGKKGHMQKDCRQ 416
>gi|223951334|gb|ACN29613.1| gag protein [Human immunodeficiency virus 1]
Length = 508
Score = 40.4 bits (93), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNC 460
C NCGKE HTA CK ++ + C+ CG H+ K+C
Sbjct: 391 CYNCGKEGHTARNCKAPRK-RGCWKCGKEGHQMKDC 425
>gi|308152398|emb|CBX25651.1| gag-pol polyprotein, intergenic region [Small ruminant lentivirus]
Length = 214
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 374 QKKRRKKTRVIEAKDKVEDARKENEAKYNVVLRMLLRKPRYFDPPGWNSETCSNCGKENH 433
QK KK + ++K++ R+ + Y +++L + R G +TC NCGK H
Sbjct: 128 QKVLGKKAQASTVEEKLQACREVESSTYK--MQLLAQALRPTGERGAKEQTCYNCGKPGH 185
Query: 434 TAATCKMQKQNKPCFLCGSFKHRWKNCKQ 462
A C + K C+ CG H ++C+Q
Sbjct: 186 LARQC---RSGKTCYKCGKRGHVQRDCRQ 211
>gi|297522363|gb|ADI44370.1| gag protein [Human immunodeficiency virus 1]
Length = 494
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNC 460
C NCGKE HTA C+ ++ K C+ CG H+ K+C
Sbjct: 386 CFNCGKEGHTAKNCRAPRK-KGCWKCGKEGHQMKDC 420
>gi|255986908|gb|ACU50836.1| gag protein [Human immunodeficiency virus 1]
Length = 499
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNC 460
C NCGKE HTA C+ ++ K C+ CG H+ K+C
Sbjct: 392 CFNCGKEGHTAKNCRAPRK-KGCWKCGKEGHQMKDC 426
>gi|264687815|gb|ACY73898.1| gag protein [Small ruminant lentivirus]
Length = 242
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Query: 388 DKVEDARKENEAKYNV-VLRMLLRKPRYFDPPGWNSETCSNCGKENHTAATCKMQKQNKP 446
+K++ R+ + Y + +L LR R D G +TC NCGK H A C + K
Sbjct: 172 EKLQACREVESSTYKMQLLAQALRPTREKDARG---QTCYNCGKPGHLARQC---RSGKI 225
Query: 447 CFLCGSFKHRWKNCKQ 462
C+ CG H K+C+Q
Sbjct: 226 CYKCGKKGHMQKDCRQ 241
>gi|332079142|gb|AEE00151.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 448
Score = 40.4 bits (93), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNC 460
C NCGKE HTA CK ++ K C+ CG H+ K+C
Sbjct: 392 CFNCGKEGHTARNCKAPRK-KGCWKCGREGHQMKDC 426
>gi|264687801|gb|ACY73891.1| gag protein [Small ruminant lentivirus]
Length = 242
Score = 40.4 bits (93), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 7/90 (7%)
Query: 374 QKKRRKKTRVIEAKDKVEDARKENEAKYNV-VLRMLLRKPRYFDPPGWNSETCSNCGKEN 432
QK K + ++K++ R+ + Y + +L LR R + S+TC NCGK
Sbjct: 158 QKVLGTKAQTSPVEEKLQACREVESSTYKMQLLAQALRPARETNT---RSQTCYNCGKPG 214
Query: 433 HTAATCKMQKQNKPCFLCGSFKHRWKNCKQ 462
H A C + K C+ CG H K+C+Q
Sbjct: 215 HLARQC---RSGKTCYKCGKKGHMQKDCRQ 241
>gi|264687817|gb|ACY73899.1| gag protein [Small ruminant lentivirus]
Length = 242
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Query: 388 DKVEDARKENEAKYNV-VLRMLLRKPRYFDPPGWNSETCSNCGKENHTAATCKMQKQNKP 446
+K++ R+ + Y + +L LR R D G +TC NCGK H A C + K
Sbjct: 172 EKLQACREVESSTYKMQLLAQALRPTREKDARG---QTCYNCGKPGHLARQC---RSGKI 225
Query: 447 CFLCGSFKHRWKNCKQ 462
C+ CG H K+C+Q
Sbjct: 226 CYKCGKKGHMQKDCRQ 241
>gi|297522420|gb|ADI44408.1| gag protein [Human immunodeficiency virus 1]
Length = 503
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Query: 421 NSETCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNC 460
NS C NCGKE H A C+ ++ K C+ CG H+ K+C
Sbjct: 388 NSVKCFNCGKEGHVARNCRAPRK-KGCWKCGKEGHQMKDC 426
>gi|405970011|gb|EKC34950.1| Myosin-10 [Crassostrea gigas]
Length = 6274
Score = 40.0 bits (92), Expect = 2.4, Method: Composition-based stats.
Identities = 56/271 (20%), Positives = 130/271 (47%), Gaps = 35/271 (12%)
Query: 23 KEKNIERGVA-------AKSKLD----EYKEISD-LTGFD-NLKAMILAESIMKRKKKRN 69
+E++IERG A++KLD YKE ++ L F + + + A+ ++ +K
Sbjct: 5533 EEQDIERGALTDWEVQYARAKLDLKEKHYKEFAEALKEFSPDHEGIQDAKHSVEELEKLK 5592
Query: 70 RKKKKKDKTKLDSLYREVADLTGFEN--LKAMIEAEAPMRRKSSERMRGNLE---TQFCA 124
+ ++K K++L+ ++ + E L+A +EA A K + R + + Q
Sbjct: 5593 HELEQKRKSQLEEAKKQQEEFEKNEKKRLEAEMEAYAKQLEKDTTREKEQQDRKLEQLNK 5652
Query: 125 QENDTVNVAEEQGQLGEDDGLNKVEETERNGREEKRRRANRAKLDEYEKISDLSGFDNLK 184
++ D V E++ ++ E+ L K+ + + E++++R + + I + D ++
Sbjct: 5653 RKEDMVK--EKKQKMNEE--LEKIRQ--QGASEDEQKRLIEQHERDLQNILNKMDADKMR 5706
Query: 185 AMIEAEAFMRRKKRNRKRKKREIEFCGQEDVSVSAEEEKGQLDKSQPLKVVEVSKPESVL 244
+ +++KK R + K QE++ + +E+K ++++ Q ++ + K E++
Sbjct: 5707 MQSNLQERLKKKKDERLKNK-------QEELKENYKEQKKEMEQKQKSEINRIKKDEALT 5759
Query: 245 TTEMDGSRHL---FIDPA-KDNEGASMGEPM 271
E S ++ PA +D++ + + EP+
Sbjct: 5760 IQESISSGYVPPRASSPAPRDDDQSVVDEPV 5790
>gi|264687821|gb|ACY73901.1| gag protein [Small ruminant lentivirus]
Length = 242
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Query: 388 DKVEDARKENEAKYNV-VLRMLLRKPRYFDPPGWNSETCSNCGKENHTAATCKMQKQNKP 446
+K++ R+ + Y + +L LR R D G +TC NCGK H A C + K
Sbjct: 172 EKLQACREVESSTYKMQLLAQALRPTREKDARG---QTCYNCGKPGHLARQC---RSGKI 225
Query: 447 CFLCGSFKHRWKNCKQ 462
C+ CG H K+C+Q
Sbjct: 226 CYKCGRKGHMQKDCRQ 241
>gi|4098047|gb|AAD00205.1| gag protein, partial [Human immunodeficiency virus 1]
Length = 125
Score = 40.0 bits (92), Expect = 2.4, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQ 462
C NCGKE H A CK + NK C+ CG H+ K+C +
Sbjct: 64 CFNCGKEGHIARNCKAPR-NKGCWKCGREGHQMKDCSE 100
>gi|155676265|gb|ABU25393.1| gag protein [Small ruminant lentivirus]
Length = 226
Score = 40.0 bits (92), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 380 KTRVIEAKDKVEDARKENEAKYNV-VLRMLLRKPRYFDPPGWNSETCSNCGKENHTAATC 438
K + ++K++ R+ + Y + +L LR DP G +TC NCGK H A C
Sbjct: 134 KAQTSTVEEKLQACREVESSTYKMQLLAQALRPQGGRDPKG---QTCYNCGKPGHLARQC 190
Query: 439 KMQKQNKPCFLCGSFKHRWKNCKQ 462
+ K C+ CG H K C+Q
Sbjct: 191 ---RSGKTCYKCGRKGHIQKACRQ 211
>gi|264687811|gb|ACY73896.1| gag protein [Small ruminant lentivirus]
Length = 242
Score = 40.0 bits (92), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 422 SETCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQ 462
S+TC NCGK H A C + K C+ CG H K+C+Q
Sbjct: 204 SQTCYNCGKPGHLARQC---RSGKTCYKCGKKGHMQKDCRQ 241
>gi|308152414|emb|CBX25659.1| gag-pol polyprotein, intergenic region [Small ruminant lentivirus]
Length = 214
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 13/93 (13%)
Query: 374 QKKRRKKTRVIEAKDKVEDARKENEAKYNV-VLRMLLRKPRYFDPPG---WNSETCSNCG 429
QK KK + ++K++ R+ + Y + +L LR P G S+TC NCG
Sbjct: 128 QKVLGKKAQTSTVEEKLQACREVESSTYKMQLLAQALR------PTGRKEAKSQTCYNCG 181
Query: 430 KENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQ 462
K H A C + K C+ CG H K+C+Q
Sbjct: 182 KPGHLARQC---RSGKTCYKCGKKGHMQKDCRQ 211
>gi|308152412|emb|CBX25658.1| gag-pol polyprotein, intergenic region [Small ruminant lentivirus]
Length = 214
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 13/93 (13%)
Query: 374 QKKRRKKTRVIEAKDKVEDARKENEAKYNV-VLRMLLRKPRYFDPPG---WNSETCSNCG 429
QK KK + ++K++ R+ + Y + +L LR P G S+TC NCG
Sbjct: 128 QKVLGKKAQTSTVEEKLQACREVESSTYKMQLLAQALR------PTGRKEAKSQTCYNCG 181
Query: 430 KENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQ 462
K H A C + K C+ CG H K+C+Q
Sbjct: 182 KPGHLARQC---RSGKTCYKCGKKGHMQKDCRQ 211
>gi|374429749|gb|AEZ51090.1| gag protein [Human immunodeficiency virus 1]
Length = 498
Score = 39.7 bits (91), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQ 462
C NCGKE H A C+ ++ K C+ CG H+ K+CK+
Sbjct: 390 CFNCGKEGHLARNCRAPRK-KGCWKCGKEGHQMKDCKE 426
>gi|255986472|gb|ACU50619.1| gag protein [Human immunodeficiency virus 1]
Length = 508
Score = 39.3 bits (90), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 415 FDPPGWNSETCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNC 460
F PG N + C NCGK+ HTA C+ ++ K C+ CG H+ K+C
Sbjct: 383 FKNPGKNIK-CFNCGKQGHTAKNCRAPRK-KGCWKCGKEGHQMKDC 426
>gi|227057835|gb|ACP18899.1| gag protein [Human immunodeficiency virus 1]
Length = 500
Score = 39.3 bits (90), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNC 460
C NCGKE H A CK ++ K C+ CG H+ K+C
Sbjct: 392 CFNCGKEGHIARNCKAPRR-KGCWKCGKEGHQMKDC 426
>gi|2944149|gb|AAC40563.1| core protein [Human immunodeficiency virus 1]
Length = 495
Score = 39.3 bits (90), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 419 GWNSETCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNC 460
G N C NCGKE H A CK ++ K C+ CG H+ K+C
Sbjct: 381 GQNRIKCFNCGKEGHLARNCKAPRK-KGCWKCGKEGHQMKDC 421
>gi|38503617|gb|AAR22600.1| gag protein [Small ruminant lentivirus]
Length = 240
Score = 38.9 bits (89), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 374 QKKRRKKTRVIEA--KDKVEDARKENEAKYNVVLRMLLRKPRYFDPPGWNSETCSNCGKE 431
Q R TRV +A ++K++ R + + L +P S+ C NCGKE
Sbjct: 126 QMDRTLGTRVQQATVEEKMQACRDVGSEGFKMQLLAQALRPNKVGGSSGRSQKCYNCGKE 185
Query: 432 NHTAATCKMQKQNKPCFLCGSFKHRWKNCKQ 462
H A C +Q C CG H K+C+Q
Sbjct: 186 GHLARQC---RQGIMCHHCGKRGHMQKDCRQ 213
>gi|259127517|gb|ACV94578.1| gag protein [Human immunodeficiency virus 1]
Length = 497
Score = 38.9 bits (89), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 416 DPPGWNSETCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNC 460
DP G C NCGKE H A C+ ++ K C+ CG H+ K+C
Sbjct: 381 DPRGQKRIKCFNCGKEGHLARNCRAPRK-KGCWKCGKEGHQMKDC 424
>gi|407227250|emb|CCA62397.1| polyprotein, partial [HIV-1 M:B_PT1147]
Length = 142
Score = 38.9 bits (89), Expect = 6.1, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQ 462
C NCGKE HTA C+ ++ K C+ CG H+ K+C +
Sbjct: 31 CFNCGKEGHTAKNCRAPRK-KGCWKCGKEGHQMKDCNE 67
>gi|224796289|gb|ACN62550.1| gag protein [Human immunodeficiency virus 1]
Length = 241
Score = 38.9 bits (89), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNC 460
C NCGKE HTA C+ ++ K C+ CG H+ K+C
Sbjct: 129 CFNCGKEGHTAKNCRAPRK-KGCWKCGREGHQMKDC 163
>gi|155676229|gb|ABU25375.1| gag protein [Small ruminant lentivirus]
Length = 226
Score = 38.5 bits (88), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 380 KTRVIEAKDKVEDARKENEAKYNV-VLRMLLRKPRYFDPPGWNSETCSNCGKENHTAATC 438
K + ++K++ R+ + Y + +L LR D G +TC NCGK H A C
Sbjct: 134 KAQTSTVEEKLQACREVESSTYKMQLLAQALRPQEGXDAKG---QTCYNCGKPGHLARQC 190
Query: 439 KMQKQNKPCFLCGSFKHRWKNCKQ 462
+ K C+ CG H K+C+Q
Sbjct: 191 ---RSGKTCYKCGRKGHIQKDCRQ 211
>gi|38503577|gb|AAR22577.1| gag protein [Small ruminant lentivirus]
Length = 240
Score = 38.5 bits (88), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
Query: 422 SETCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQ 462
S+ C NCGKE H A C +Q C CG H K+C+Q
Sbjct: 176 SQKCYNCGKEGHLARQC---RQGIICHHCGKRGHMQKDCRQ 213
>gi|264687829|gb|ACY73905.1| gag protein [Small ruminant lentivirus]
Length = 242
Score = 38.5 bits (88), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 423 ETCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQ 462
+TC NCGK H A C + K C+ CG H K+C+Q
Sbjct: 205 QTCYNCGKPGHLARQC---RNGKTCYKCGKKGHMQKDCRQ 241
>gi|264687825|gb|ACY73903.1| gag protein [Small ruminant lentivirus]
Length = 242
Score = 38.5 bits (88), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 423 ETCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQ 462
+TC NCGK H A C + K C+ CG H K+C+Q
Sbjct: 205 QTCYNCGKPGHLARQC---RNGKTCYKCGKKGHTQKDCRQ 241
>gi|22532141|gb|AAM97852.1|AF460974_1 gag protein [Human immunodeficiency virus 1]
Length = 505
Score = 38.5 bits (88), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 393 ARKENEAKYNVVLRMLLRKPRYFDPPGWNSETCSNCGKENHTAATCKMQKQNKPCFLCGS 452
A ++A V ++++K + P G C NCGKE H A C+ ++ K C+ CG
Sbjct: 364 AEAMSQASGAVTAAIMMQKSNFKGPKG--RIKCFNCGKEGHVARNCRAPRK-KGCWKCGK 420
Query: 453 FKHRWKNC 460
H+ K+C
Sbjct: 421 EGHQMKDC 428
>gi|169798151|gb|ACA81609.1| gag polyprotein [Caprine arthritis encephalitis virus Roccaverano]
Length = 442
Score = 38.1 bits (87), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 374 QKKRRKKTRVIEAKDKVEDARKENEAKYNV-VLRMLLRKPRYFDPPGWNSETCSNCGKEN 432
QK K + ++K++ R+ + Y + +L LR D G +TC NCGK
Sbjct: 333 QKVLGNKAQTSTVEEKLQACREVESSTYKMQLLAQALRPQGGRDAKG---QTCYNCGKPG 389
Query: 433 HTAATCKMQKQNKPCFLCGSFKHRWKNCKQ 462
H A C + K C+ CG H K+C+Q
Sbjct: 390 HLARQC---RSGKTCYKCGRKGHIQKDCRQ 416
>gi|155676257|gb|ABU25389.1| gag protein [Small ruminant lentivirus]
Length = 226
Score = 38.1 bits (87), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 7/90 (7%)
Query: 374 QKKRRKKTRVIEAKDKVEDARKENEAKYNV-VLRMLLRKPRYFDPPGWNSETCSNCGKEN 432
QK K + ++K++ R+ + Y + +L LR D G +TC NCGK
Sbjct: 128 QKVLGNKAQTSTVEEKLQACREVESSTYKMQLLAQALRPQGGRDAKG---QTCYNCGKPG 184
Query: 433 HTAATCKMQKQNKPCFLCGSFKHRWKNCKQ 462
H A C + K C+ CG H K+C+Q
Sbjct: 185 HLARQC---RSGKTCYKCGRKGHMQKDCRQ 211
>gi|149237715|ref|XP_001524734.1| zinc-finger protein GIS2 [Lodderomyces elongisporus NRRL YB-4239]
gi|146451331|gb|EDK45587.1| zinc-finger protein GIS2 [Lodderomyces elongisporus NRRL YB-4239]
Length = 178
Score = 38.1 bits (87), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 35/90 (38%), Gaps = 11/90 (12%)
Query: 378 RKKTRVIEAKDKVEDARKENEAKYNVVLRMLLRKPRY-----FDPPGWNSETCSNCGKEN 432
R + E +D +E YN KP + DP NS+ C +CG
Sbjct: 7 RTCYKCGEVGHVADDCTQEERLCYN------CHKPGHESGDCPDPKQTNSKQCYSCGDVG 60
Query: 433 HTAATCKMQKQNKPCFLCGSFKHRWKNCKQ 462
H C Q Q C+ CG F H KNC Q
Sbjct: 61 HIQTECPNQAQGTKCYNCGQFGHISKNCTQ 90
>gi|38503658|gb|AAR22622.1| gag protein [Small ruminant lentivirus]
Length = 240
Score = 38.1 bits (87), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 374 QKKRRKKTRVIEA--KDKVEDARKENEAKYNVVLRMLLRKPRYFDPPGWNSETCSNCGKE 431
Q R TRV +A ++K++ R + + L +P ++ C NCGKE
Sbjct: 126 QMDRTLGTRVQQATVEEKMQACRDVGSEGFKMQLLAQALRPNKIGGSSGRNQKCYNCGKE 185
Query: 432 NHTAATCKMQKQNKPCFLCGSFKHRWKNCKQ 462
H A C +Q C CG H K+C+Q
Sbjct: 186 GHLARQC---RQGIICHHCGKRGHMQKDCRQ 213
>gi|50952855|gb|AAT90353.1| gag protein [Small ruminant lentivirus]
gi|50952857|gb|AAT90354.1| gag protein [Small ruminant lentivirus]
Length = 240
Score = 38.1 bits (87), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 374 QKKRRKKTRVIEA--KDKVEDARKENEAKYNVVLRMLLRKPRYFDPPGWNSETCSNCGKE 431
Q R TRV +A ++K++ R + + L +P ++ C NCGKE
Sbjct: 126 QMDRTLGTRVQQATVEEKMQACRDVGSEGFKMQLLAQALRPNKIGGSSGRNQKCYNCGKE 185
Query: 432 NHTAATCKMQKQNKPCFLCGSFKHRWKNCKQ 462
H A C +Q C CG H K+C+Q
Sbjct: 186 GHLARQC---RQGIICHHCGKRGHMQKDCRQ 213
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.310 0.128 0.351
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,895,416,047
Number of Sequences: 23463169
Number of extensions: 292960243
Number of successful extensions: 1359961
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 23095
Number of HSP's that attempted gapping in prelim test: 1246058
Number of HSP's gapped (non-prelim): 85663
length of query: 463
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 317
effective length of database: 8,933,572,693
effective search space: 2831942543681
effective search space used: 2831942543681
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 79 (35.0 bits)