BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012460
(463 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Q721|GAG_HV1V9 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype H (isolate VI991) GN=gag PE=3 SV=3
Length = 498
Score = 40.8 bits (94), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNC 460
CSNCGKE H A C+ ++ K C+ CG H+ K+C
Sbjct: 395 CSNCGKEGHIARNCRAPRK-KGCWKCGQEGHQMKDC 429
>sp|P18802|POL_HV1ND Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate NDK) GN=gag-pol PE=3 SV=3
Length = 1432
Score = 40.8 bits (94), Expect = 0.024, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 422 SETCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQ 462
S C NCGKE HTA C+ ++ K C+ CG H+ K+C +
Sbjct: 387 SIKCFNCGKEGHTAKNCRAPRK-KGCWKCGREGHQMKDCTE 426
>sp|P03366|POL_HV1B1 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate BH10) GN=gag-pol PE=1 SV=3
Length = 1447
Score = 40.4 bits (93), Expect = 0.026, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQ 462
C NCGKE HTA C+ ++ K C+ CG H+ K+C +
Sbjct: 392 CFNCGKEGHTARNCRAPRK-KGCWKCGKEGHQMKDCTE 428
>sp|P04585|POL_HV1H2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate HXB2) GN=gag-pol PE=1 SV=4
Length = 1435
Score = 40.4 bits (93), Expect = 0.027, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQ 462
C NCGKE HTA C+ ++ K C+ CG H+ K+C +
Sbjct: 392 CFNCGKEGHTARNCRAPRK-KGCWKCGKEGHQMKDCTE 428
>sp|Q9Q720|POL_HV1V9 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype H (isolate VI991) GN=gag-pol PE=3 SV=3
Length = 1436
Score = 40.4 bits (93), Expect = 0.027, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNC 460
CSNCGKE H A C+ ++ K C+ CG H+ K+C
Sbjct: 395 CSNCGKEGHIARNCRAPRK-KGCWKCGQEGHQMKDC 429
>sp|P18800|GAG_HV1ND Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype D (isolate NDK) GN=gag PE=3 SV=3
Length = 497
Score = 40.4 bits (93), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNC 460
C NCGKE HTA C+ ++ K C+ CG H+ K+C
Sbjct: 390 CFNCGKEGHTAKNCRAPRK-KGCWKCGREGHQMKDC 424
>sp|P03347|GAG_HV1B1 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate BH10) GN=gag PE=1 SV=3
Length = 512
Score = 40.4 bits (93), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNC 460
C NCGKE HTA C+ ++ K C+ CG H+ K+C
Sbjct: 392 CFNCGKEGHTARNCRAPRK-KGCWKCGKEGHQMKDC 426
>sp|P04591|GAG_HV1H2 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate HXB2) GN=gag PE=1 SV=3
Length = 500
Score = 40.0 bits (92), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNC 460
C NCGKE HTA C+ ++ K C+ CG H+ K+C
Sbjct: 392 CFNCGKEGHTARNCRAPRK-KGCWKCGKEGHQMKDC 426
>sp|Q1A268|GAG_SIVMB Gag polyprotein OS=Simian immunodeficiency virus (isolate MB66)
GN=gag PE=3 SV=3
Length = 499
Score = 40.0 bits (92), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNC 460
C NCGKE H A CK ++ K C+ CG H+ +NC
Sbjct: 387 CFNCGKEGHIARNCKAPRR-KGCWKCGQEGHQMRNC 421
>sp|Q9IDV9|POL_HV1YB Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group N
(isolate YBF106) GN=gag-pol PE=3 SV=3
Length = 1449
Score = 39.7 bits (91), Expect = 0.047, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCK 461
C NCGKE H A CK ++ + C+ CG H+ K+CK
Sbjct: 394 CFNCGKEGHLARNCKAPRR-RGCWKCGQEGHQMKDCK 429
>sp|Q1A267|POL_SIVMB Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate MB66)
GN=gag-pol PE=3 SV=4
Length = 1438
Score = 39.7 bits (91), Expect = 0.049, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNC 460
C NCGKE H A CK ++ K C+ CG H+ +NC
Sbjct: 387 CFNCGKEGHIARNCKAPRR-KGCWKCGQEGHQMRNC 421
>sp|Q02836|POL_SIVG1 Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.grivet
(isolate AGM gr-1) GN=gag-pol PE=3 SV=2
Length = 1472
Score = 39.7 bits (91), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCK 461
C NCGK H CK +Q K CF CG H K+CK
Sbjct: 392 CFNCGKFGHMQRECKAPRQIK-CFKCGKIGHMAKDCK 427
>sp|Q1A249|POL_SIVEK Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate
EK505) GN=gag-pol PE=3 SV=3
Length = 1448
Score = 39.7 bits (91), Expect = 0.049, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCK 461
C NCGKE H A CK ++ K C+ CG H+ K+C+
Sbjct: 395 CFNCGKEGHLARNCKAPRK-KGCWKCGQEGHQMKDCR 430
>sp|P17283|POL_SIVCZ Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate CPZ
GAB1) GN=gag-pol PE=3 SV=2
Length = 1384
Score = 39.7 bits (91), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNC 460
C NCGKE H A CK ++ K C+ CG H+ K+C
Sbjct: 343 CFNCGKEGHLARNCKAPRR-KGCWRCGQEGHQMKDC 377
>sp|O91079|GAG_HV1YF Gag polyprotein OS=Human immunodeficiency virus type 1 group N
(isolate YBF30) GN=gag PE=3 SV=3
Length = 512
Score = 39.7 bits (91), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCK 461
C NCGKE H A CK ++ C+ CG H+ K+CK
Sbjct: 395 CFNCGKEGHLARNCKAPRRGG-CWKCGQEGHQMKDCK 430
>sp|P05960|POL_HV1C4 Gag-Pol polyprotein (Fragment) OS=Human immunodeficiency virus type
1 group M subtype B (isolate CDC-451) GN=gag-pol PE=3
SV=3
Length = 550
Score = 39.7 bits (91), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNC 460
C NCGKE H A CK ++ K C+ CG H+ K+C
Sbjct: 392 CFNCGKEGHIARNCKAPRK-KGCWKCGREGHQMKDC 426
>sp|Q79666|POL_HV1MV Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate MVP5180) GN=gag-pol PE=3 SV=3
Length = 1446
Score = 39.3 bits (90), Expect = 0.057, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCK 461
C NCGKE H A C+ ++ + C+ CG H+ K+CK
Sbjct: 396 CFNCGKEGHIAKNCRAPRK-RGCWKCGQEGHQMKDCK 431
>sp|P04587|POL_HV1B5 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate BH5) GN=gag-pol PE=1 SV=3
Length = 1447
Score = 39.3 bits (90), Expect = 0.058, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQ 462
C NCGKE H A CK ++ K C+ CG H+ K+C +
Sbjct: 392 CFNCGKEGHIARNCKAPRK-KGCWKCGKEGHQMKDCTE 428
>sp|Q77373|POL_HV1AN Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate ANT70) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 39.3 bits (90), Expect = 0.061, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCK 461
C NCGKE H A C+ ++ K C+ CG H+ K+C+
Sbjct: 396 CFNCGKEGHIARNCRAPRK-KGCWKCGQEGHQMKDCR 431
>sp|Q1A250|GAG_SIVEK Gag polyprotein OS=Simian immunodeficiency virus (isolate EK505)
GN=gag PE=3 SV=3
Length = 511
Score = 39.3 bits (90), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCK 461
C NCGKE H A CK ++ K C+ CG H+ K+C+
Sbjct: 395 CFNCGKEGHLARNCKAPRK-KGCWKCGQEGHQMKDCR 430
>sp|Q9IDV8|GAG_HV1YB Gag polyprotein OS=Human immunodeficiency virus type 1 group N
(isolate YBF106) GN=gag PE=3 SV=3
Length = 511
Score = 39.3 bits (90), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCK 461
C NCGKE H A CK ++ + C+ CG H+ K+CK
Sbjct: 394 CFNCGKEGHLARNCKAPRR-RGCWKCGQEGHQMKDCK 429
>sp|Q79665|GAG_HV1MV Gag polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate MVP5180) GN=gag PE=3 SV=3
Length = 498
Score = 39.3 bits (90), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCK 461
C NCGKE H A C+ ++ + C+ CG H+ K+CK
Sbjct: 396 CFNCGKEGHIAKNCRAPRK-RGCWKCGQEGHQMKDCK 431
>sp|P04593|GAG_HV1B5 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate BH5) GN=gag PE=3 SV=3
Length = 512
Score = 39.3 bits (90), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNC 460
C NCGKE H A CK ++ K C+ CG H+ K+C
Sbjct: 392 CFNCGKEGHIARNCKAPRK-KGCWKCGKEGHQMKDC 426
>sp|P05887|GAG_HV1C4 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate CDC-451) GN=gag PE=3 SV=3
Length = 500
Score = 38.9 bits (89), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNC 460
C NCGKE H A CK ++ K C+ CG H+ K+C
Sbjct: 392 CFNCGKEGHIARNCKAPRK-KGCWKCGREGHQMKDC 426
>sp|P12497|POL_HV1N5 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate NY5) GN=gag-pol PE=1 SV=4
Length = 1435
Score = 38.9 bits (89), Expect = 0.083, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQ 462
C NCGKE H A C+ ++ K C+ CG H+ K+C +
Sbjct: 392 CFNCGKEGHIAKNCRAPRK-KGCWKCGKEGHQMKDCTE 428
>sp|O91080|POL_HV1YF Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group N
(isolate YBF30) GN=gag-pol PE=3 SV=3
Length = 1449
Score = 38.9 bits (89), Expect = 0.084, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCK 461
C NCGKE H A CK ++ C+ CG H+ K+CK
Sbjct: 395 CFNCGKEGHLARNCKAPRRGG-CWKCGQEGHQMKDCK 430
>sp|P17282|GAG_SIVCZ Gag polyprotein OS=Simian immunodeficiency virus (isolate CPZ GAB1)
GN=gag PE=3 SV=1
Length = 508
Score = 38.9 bits (89), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNC 460
C NCGKE H A CK ++ K C+ CG H+ K+C
Sbjct: 402 CFNCGKEGHLARNCKAPRR-KGCWRCGQEGHQMKDC 436
>sp|P35963|POL_HV1Y2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate YU-2) GN=gag-pol PE=1 SV=3
Length = 1435
Score = 38.9 bits (89), Expect = 0.093, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQ 462
C NCGKE H A C+ ++ K C+ CG H+ K+C +
Sbjct: 392 CFNCGKEGHIAKNCRAPRK-KGCWKCGKEGHQMKDCTE 428
>sp|Q803L0|LN28A_DANRE Protein lin-28 homolog A OS=Danio rerio GN=lin28a PE=1 SV=1
Length = 202
Score = 38.9 bits (89), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 18/36 (50%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNC 460
C NCG NH A C++ Q K C C S H NC
Sbjct: 131 CFNCGGPNHHAKECQLPPQPKKCHFCQSISHMVANC 166
>sp|Q77372|GAG_HV1AN Gag polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate ANT70) GN=gag PE=3 SV=3
Length = 498
Score = 38.5 bits (88), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCK 461
C NCGKE H A C+ ++ K C+ CG H+ K+C+
Sbjct: 396 CFNCGKEGHIARNCRAPRK-KGCWKCGQEGHQMKDCR 431
>sp|P24740|POL_HV1U4 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype A (isolate U455) GN=gag-pol PE=1 SV=3
Length = 1428
Score = 38.5 bits (88), Expect = 0.10, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQ 462
C NCGKE H A C+ ++ K C+ CG H+ K+C +
Sbjct: 386 CFNCGKEGHLAKNCRAPRK-KGCWKCGKEGHQMKDCTE 422
>sp|Q73368|POL_HV1B9 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (strain 89.6) GN=gag-pol PE=3 SV=3
Length = 1435
Score = 38.5 bits (88), Expect = 0.10, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQ 462
C NCGKE H A C+ ++ K C+ CG H+ K+C +
Sbjct: 392 CFNCGKEGHIAKNCRAPRK-KGCWKCGKEGHQMKDCTE 428
>sp|P0C6F2|POL_HV1LW Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate LW123) GN=gag-pol PE=1 SV=1
Length = 1435
Score = 38.5 bits (88), Expect = 0.11, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQ 462
C NCGKE H A C+ ++ K C+ CG H+ K+C +
Sbjct: 392 CFNCGKEGHIARNCRAPRK-KGCWKCGKEGHQMKDCTE 428
>sp|Q9QBZ5|POL_HV1MP Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype F2 (isolate MP255) GN=gag-pol PE=3 SV=3
Length = 1430
Score = 38.5 bits (88), Expect = 0.11, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQ 462
C NCGKE H A C+ ++ K C+ CG H+ K+C +
Sbjct: 387 CFNCGKEGHIARNCRAPRK-KGCWKCGKEGHQMKDCTE 423
>sp|P03367|POL_HV1BR Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate BRU/LAI) GN=gag-pol PE=1 SV=3
Length = 1447
Score = 38.5 bits (88), Expect = 0.11, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQ 462
C NCGKE H A C+ ++ K C+ CG H+ K+C +
Sbjct: 392 CFNCGKEGHIARNCRAPRK-KGCWKCGKEGHQMKDCTE 428
>sp|Q9QBZ9|POL_HV197 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype K (isolate 97ZR-EQTB11) GN=gag-pol PE=3 SV=2
Length = 1429
Score = 38.5 bits (88), Expect = 0.11, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQ 462
C NCGKE H A C+ ++ K C+ CG H+ K+C +
Sbjct: 387 CFNCGKEGHLARNCRAPRK-KGCWKCGKEGHQMKDCSE 423
>sp|Q9QBY3|POL_HV196 Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype K (isolate 96CM-MP535) GN=gag-pol PE=3 SV=3
Length = 1430
Score = 38.5 bits (88), Expect = 0.11, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQ 462
C NCGKE H A C+ ++ K C+ CG H+ K+C +
Sbjct: 387 CFNCGKEGHIARNCRAPRK-KGCWKCGKEGHQMKDCTE 423
>sp|Q75002|POL_HV1ET Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype C (isolate ETH2220) GN=gag-pol PE=3 SV=3
Length = 1439
Score = 38.5 bits (88), Expect = 0.11, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQ 462
C NCGKE H A C+ ++ K C+ CG H+ K+C +
Sbjct: 389 CFNCGKEGHLARNCRAPRK-KGCWKCGKEGHQMKDCTE 425
>sp|P12498|POL_HV1J3 Gag-Pol polyprotein (Fragment) OS=Human immunodeficiency virus type
1 group M subtype B (isolate JH32) GN=gag-pol PE=3 SV=4
Length = 532
Score = 38.5 bits (88), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNC 460
C NCGKE H A C+ ++ K C+ CG H+ K+C
Sbjct: 392 CFNCGKEGHLARNCRAPRK-KGCWKCGKEGHQMKDC 426
>sp|P04588|POL_HV1MA Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype A (isolate MAL) GN=gag-pol PE=1 SV=3
Length = 1440
Score = 38.5 bits (88), Expect = 0.13, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQ 462
C NCGKE H A C+ ++ K C+ CG H+ K+C +
Sbjct: 398 CFNCGKEGHLARNCRAPRK-KGCWKCGKEGHQMKDCTE 434
>sp|O89940|POL_HV1SE Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group M
subtype G (isolate SE6165) GN=gag-pol PE=3 SV=3
Length = 1433
Score = 38.1 bits (87), Expect = 0.13, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQ 462
C NCGKE H A C+ ++ K C+ CG H+ K+C +
Sbjct: 393 CFNCGKEGHLARNCRAPRK-KGCWKCGKEGHQMKDCTE 429
>sp|Q9QC00|GAG_HV197 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype K (isolate 97ZR-EQTB11) GN=gag PE=3 SV=2
Length = 495
Score = 38.1 bits (87), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNC 460
C NCGKE H A C+ ++ K C+ CG H+ K+C
Sbjct: 387 CFNCGKEGHLARNCRAPRK-KGCWKCGKEGHQMKDC 421
>sp|P12494|GAG_HV1J3 Gag polyprotein OS=Human immunodeficiency virus type 1 group M
subtype B (isolate JH32) GN=gag PE=3 SV=3
Length = 500
Score = 38.1 bits (87), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 425 CSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNC 460
C NCGKE H A C+ ++ K C+ CG H+ K+C
Sbjct: 392 CFNCGKEGHLARNCRAPRK-KGCWKCGKEGHQMKDC 426
>sp|P53996|CNBP_MOUSE Cellular nucleic acid-binding protein OS=Mus musculus GN=Cnbp PE=2
SV=2
Length = 178
Score = 33.1 bits (74), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 423 ETCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQV 463
+ C NCGK H A C + K C+ CG F H K+C +V
Sbjct: 97 QCCYNCGKPGHLARDCDHADEQK-CYSCGEFGHIQKDCTKV 136
>sp|P62634|CNBP_RAT Cellular nucleic acid-binding protein OS=Rattus norvegicus GN=Cnbp
PE=2 SV=1
Length = 177
Score = 33.1 bits (74), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 423 ETCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQV 463
+ C NCGK H A C + K C+ CG F H K+C +V
Sbjct: 96 QCCYNCGKPGHLARDCDHADEQK-CYSCGEFGHIQKDCTKV 135
>sp|Q5R5R5|CNBP_PONAB Cellular nucleic acid-binding protein OS=Pongo abelii GN=CNBP PE=2
SV=1
Length = 177
Score = 33.1 bits (74), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 423 ETCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQV 463
+ C NCGK H A C + K C+ CG F H K+C +V
Sbjct: 96 QCCYNCGKPGHLARDCDHADEQK-CYSCGEFGHIQKDCTKV 135
>sp|P62633|CNBP_HUMAN Cellular nucleic acid-binding protein OS=Homo sapiens GN=CNBP PE=1
SV=1
Length = 177
Score = 33.1 bits (74), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 423 ETCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQV 463
+ C NCGK H A C + K C+ CG F H K+C +V
Sbjct: 96 QCCYNCGKPGHLARDCDHADEQK-CYSCGEFGHIQKDCTKV 135
>sp|Q3T0Q6|CNBP_BOVIN Cellular nucleic acid-binding protein OS=Bos taurus GN=CNBP PE=2
SV=1
Length = 170
Score = 33.1 bits (74), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 423 ETCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQV 463
+ C NCGK H A C + K C+ CG F H K+C +V
Sbjct: 89 QCCYNCGKPGHLARDCDHADEQK-CYSCGEFGHIQKDCTKV 128
>sp|O42395|CNBP_CHICK Cellular nucleic acid-binding protein OS=Gallus gallus GN=CNBP PE=2
SV=1
Length = 172
Score = 32.7 bits (73), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 423 ETCSNCGKENHTAATCKMQKQNKPCFLCGSFKHRWKNCKQV 463
+ C NCGK H A C + K C+ CG F H K+C +V
Sbjct: 91 QCCYNCGKPGHLARDCDHADEQK-CYSCGEFGHIQKDCTKV 130
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.128 0.351
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 168,459,170
Number of Sequences: 539616
Number of extensions: 7330893
Number of successful extensions: 33686
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 875
Number of HSP's that attempted gapping in prelim test: 30649
Number of HSP's gapped (non-prelim): 2854
length of query: 463
length of database: 191,569,459
effective HSP length: 121
effective length of query: 342
effective length of database: 126,275,923
effective search space: 43186365666
effective search space used: 43186365666
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 63 (28.9 bits)