Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>012461
MEFKFRAIDERTTPCRSSPSPSSHSLSYFSEQALRVNYSMDPNFMHNPRDFYTIQREIEK
ERIRHEIITAENLRRRLLEEEVRRELMMEREMARASEMGLSMDERLSMQLHSRYPLMHQL
NNRWLEDRFPFPGSRGMGFGHDVLPPTLPQFSDAMKDEIRNALEVNKKDKLIMLAKPDPN
LCGSKRKASTPPAASVELPLMSSKKTKEWSCALCQVSATSERGLDEHLQGKKHKAKEAGL
LRAQKMCNNSISSMSKKSGKKIKLRESKDSSGQEMKTDVEEESTEVNKAVVGSERKAEVV
EDSEIKNEGLPKKDLTAKTRKKKNGIPTAEKTKRKPPLRKKFKFWCEDCQVGTHSAVVME
GHKRGKKHIARSNESKKNDDAVPATSSMTIVAPPDPTEKAEDEDVVAEEPNEKTTGCVTE
KDEDEEVVAKKAKKEMAENVTGDSNGTRPSIVADVVDLMQKTH

High Scoring Gene Products

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  012461
        (463 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2061486 - symbol:AT2G24030 species:3702 "Arabi...   110  2.7e-06   3


>TAIR|locus:2061486 [details] [associations]
            symbol:AT2G24030 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005622
            "intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
            [GO:0008150 "biological_process" evidence=ND] [GO:0008270 "zinc ion
            binding" evidence=IEA] InterPro:IPR003604 InterPro:IPR015880
            SMART:SM00355 SMART:SM00451 EMBL:CP002685 GO:GO:0008270
            GO:GO:0003676 GO:GO:0005622 EMBL:BT026136 IPI:IPI00534613
            RefSeq:NP_179981.2 UniGene:At.39211 UniGene:At.68928
            ProteinModelPortal:Q147F7 SMR:Q147F7 IntAct:Q147F7
            EnsemblPlants:AT2G24030.1 GeneID:816937 KEGG:ath:AT2G24030
            TAIR:At2g24030 HOGENOM:HOG000121766 InParanoid:Q147F7 OMA:CEICKVG
            ProtClustDB:CLSN2681164 Genevestigator:Q147F7 Uniprot:Q147F7
        Length = 455

 Score = 110 (43.8 bits), Expect = 2.7e-06, Sum P(3) = 2.7e-06
 Identities = 20/52 (38%), Positives = 28/52 (53%)

Query:   345 WCEDCQVGTHSAVVMEGHKRGKKHIARSNESKKNDDAVPATSSMTIVAPPDP 396
             WCE C+VGT+  +VM  H+ GKKH A   +  +  +A   + S   V  P P
Sbjct:   295 WCEICKVGTYCQIVMRDHELGKKHKAAVTQQNETPEAASTSLSPASVTAPQP 346

 Score = 61 (26.5 bits), Expect = 2.7e-06, Sum P(3) = 2.7e-06
 Identities = 32/109 (29%), Positives = 51/109 (46%)

Query:   146 PTLPQFSDAMKDEIRNALEVNKKDKLIMLAKPDPNLCGSKRKASTPPAASV----ELPLM 201
             P L Q S+A    +   LE NK++ LI+L + D  + G+K KA +     +    ++P  
Sbjct:   153 PQLQQMSEATGTSM---LESNKEN-LIVLNRAD--IIGAKPKADSVGTMQLPKLQQMPEA 206

Query:   202 SS----KKTKEWSCALCQVSATSER--------GLDEHLQGKKHKAKEA 238
             +     +  KE    L +     E+        GL+E LQ K+ KAKE+
Sbjct:   207 TGTSVLESNKEQFIVLARADPVGEKRKAEDIQTGLNEDLQVKRPKAKES 255

 Score = 45 (20.9 bits), Expect = 2.7e-06, Sum P(3) = 2.7e-06
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query:     1 MEFKFRAIDERTTP 14
             MEF++RAID    P
Sbjct:     1 MEFRYRAIDNNRPP 14

 Score = 39 (18.8 bits), Expect = 0.00040, Sum P(3) = 0.00040
 Identities = 11/44 (25%), Positives = 22/44 (50%)

Query:   269 DSSGQEMKTDVEEESTEVNKAVVGSERK----AEVVEDSEIKNE 308
             D   + +K ++E+E       +  + RK    AEV+++  I+ E
Sbjct:    44 DQVREAIKREIEKEQIRQEIIIAEAARKRELIAEVLQEMAIERE 87


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.128   0.375    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      463       336   0.00092  116 3  11 23  0.46    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  607 (65 KB)
  Total size of DFA:  229 KB (2125 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  28.44u 0.13s 28.57t   Elapsed:  00:00:02
  Total cpu time:  28.44u 0.13s 28.57t   Elapsed:  00:00:02
  Start:  Fri May 10 14:43:45 2013   End:  Fri May 10 14:43:47 2013

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