BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012461
(463 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6AXX3|Z385D_RAT Zinc finger protein 385D OS=Rattus norvegicus GN=Znf385d PE=2 SV=1
Length = 395
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 77/173 (44%), Gaps = 21/173 (12%)
Query: 201 MSSKKTKEWSCALCQVSATSERGLDEHLQGKKHKAKEAGLLRAQKMCNNSISSMSKKSGK 260
+ +K + SC +CQ+ S+ H +G KH K L+A + SM K K
Sbjct: 72 LPHRKKQIISCNICQLRFNSDSQAAAHYKGTKHAKK----LKA-------LESMKNKQ-K 119
Query: 261 KIKLRESKDSSGQEMKTDVEEESTEVNKAVVGSE---RKAEVVEDSEIKNE--GLPKKDL 315
+ ++S ++ + T+ S++ ++ G++ R A++ + SE+ E +K L
Sbjct: 120 SVTAKDSAKTTFTSITTNPITTSSDKTESTAGTQVIARSADMRKSSEVTTELTSNAEKSL 179
Query: 316 TAKTRKKKNGIPTAEKTKRKPPLRKKFKFWCEDCQVGTHSAVVMEGHKRGKKH 368
TA N P E + K K +C C+V +SA +E H G KH
Sbjct: 180 TAAVAAGNNSSPPTETEEEK----AKRLLYCSLCKVAVNSASQLEAHNSGTKH 228
>sp|Q6GPM1|ZFR_XENLA Zinc finger RNA-binding protein OS=Xenopus laevis GN=zfr PE=2 SV=1
Length = 1054
Score = 40.4 bits (93), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 211 CALCQVSATSERGLDEHLQGKKHKAKEAGLLRAQKMCNNSISSMSKKSGKKIKLR 265
C +C++S + EHL+G+KHK KEA L K N+ SS + G + +LR
Sbjct: 324 CDVCKISCAGPQTYKEHLEGQKHKKKEAAL----KASQNTTSSSTAVRGTQNQLR 374
>sp|Q5U231|ZFR_XENTR Zinc finger RNA-binding protein OS=Xenopus tropicalis GN=zfr PE=2
SV=1
Length = 1065
Score = 40.4 bits (93), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 211 CALCQVSATSERGLDEHLQGKKHKAKEAGLLRAQKMCNNSISSMSKKSGKKIKLR 265
C +C++S + EHL+G+KHK KEA L K N+ SS + G + +LR
Sbjct: 333 CDVCKISCAGPQTYKEHLEGQKHKKKEAAL----KASQNTTSSSTAVRGTQNQLR 383
>sp|Q9H6B1|Z385D_HUMAN Zinc finger protein 385D OS=Homo sapiens GN=ZNF385D PE=2 SV=1
Length = 395
Score = 39.3 bits (90), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 68/160 (42%), Gaps = 13/160 (8%)
Query: 210 SCALCQVSATSERGLDEHLQGKKHKAKEAGLLRAQKMCNNSISSMSKKSGKKIKLRESKD 269
SC +CQ+ S+ H +G KH AK+ L A K N S +K S K + +
Sbjct: 81 SCNICQLRFNSDSQAAAHYKGTKH-AKKLKALEAMK--NKQKSVTAKDSAKTTFTSITTN 137
Query: 270 SSGQEM-KTDVEEESTEVNKAVVGSERKAEVVEDSEIKNEGLPKKDLTAKTRKKKNGIPT 328
+ KTD + ++ RK+ V+ +EI + K + + T + P+
Sbjct: 138 TINTSSDKTDGTAGTPAISTTTTVEIRKSSVM-TTEITS----KVEKSPTTATGNSSCPS 192
Query: 329 AEKTKRKPPLRKKFKFWCEDCQVGTHSAVVMEGHKRGKKH 368
E + K K +C C+V +SA +E H G KH
Sbjct: 193 TETEEEK----AKRLLYCSLCKVAVNSASQLEAHNSGTKH 228
Score = 32.3 bits (72), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 207 KEWSCALCQVSATSERGLDEHLQGKKHKAKEAG 239
K + C +C V SE L +H+ ++HK + AG
Sbjct: 265 KTFHCEICDVHVNSETQLKQHISSRRHKDRAAG 297
>sp|Q8BXJ8|Z385B_MOUSE Zinc finger protein 385B OS=Mus musculus GN=Znf385b PE=2 SV=1
Length = 482
Score = 36.6 bits (83), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 70/178 (39%), Gaps = 33/178 (18%)
Query: 204 KKTKEWSCALCQVSATSERGLDEHLQGKKHKAKEAGLLRAQKMCNNSISSMSKKSGKKIK 263
KK + SC +CQ+ S+ + H +G KH AK+ L A K K K
Sbjct: 164 KKKQVISCNVCQLRFNSDSQAEAHYKGSKH-AKKVKALEATK--------------NKPK 208
Query: 264 LRESKDSS----------GQEMKTDVEEESTEVNKAVVGSERKAEVVEDSEIKNEGLP-K 312
+ SKDS+ G +D E+ ++ KA S+ +K+ P
Sbjct: 209 MVPSKDSAKANPSCSIRPGTGDSSDKSEDKGKI-KATSSSQPSGSEGGSFLLKSGTTPLP 267
Query: 313 KDLTAKTRKKKNGIP--TAEKTKRKPPLRKKFKFWCEDCQVGTHSAVVMEGHKRGKKH 368
A K NG P AE + K KK +C C+V +S +E H G KH
Sbjct: 268 LGAIASPSKSTNGAPGSVAESEEEK---AKKL-LYCSLCKVAVNSLSQLEAHNTGSKH 321
>sp|Q5REX3|ZFR_PONAB Zinc finger RNA-binding protein OS=Pongo abelii GN=ZFR PE=2 SV=1
Length = 1074
Score = 36.2 bits (82), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 211 CALCQVSATSERGLDEHLQGKKHKAKEAGL 240
C +C++S + EHL+G+KHK KEA L
Sbjct: 333 CDVCKISCAGPQTYKEHLEGQKHKKKEAAL 362
>sp|Q96KR1|ZFR_HUMAN Zinc finger RNA-binding protein OS=Homo sapiens GN=ZFR PE=1 SV=2
Length = 1074
Score = 36.2 bits (82), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 211 CALCQVSATSERGLDEHLQGKKHKAKEAGL 240
C +C++S + EHL+G+KHK KEA L
Sbjct: 333 CDVCKISCAGPQTYKEHLEGQKHKKKEAAL 362
>sp|O88532|ZFR_MOUSE Zinc finger RNA-binding protein OS=Mus musculus GN=Zfr PE=1 SV=2
Length = 1074
Score = 35.8 bits (81), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 211 CALCQVSATSERGLDEHLQGKKHKAKEAGL 240
C +C++S + EHL+G+KHK KEA L
Sbjct: 333 CDVCKISCAGPQTYKEHLEGQKHKKKEAAL 362
>sp|Q6PCR6|ZFR_DANRE Zinc finger RNA-binding protein OS=Danio rerio GN=zfr PE=2 SV=2
Length = 1074
Score = 35.8 bits (81), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 211 CALCQVSATSERGLDEHLQGKKHKAKEAGL 240
C +C++S + EHL+G+KHK KEA L
Sbjct: 326 CDVCKISCAGPQTYKEHLEGQKHKKKEAAL 355
>sp|O95243|MBD4_HUMAN Methyl-CpG-binding domain protein 4 OS=Homo sapiens GN=MBD4 PE=1
SV=1
Length = 580
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 52/133 (39%), Gaps = 26/133 (19%)
Query: 234 KAKEAGLLRAQKMCNNSISSMSKKSGKKIKLRESKDSSGQEMKTDVEEESTEVNKAVVGS 293
K KE L C S K SG K +KDS E D ES E+ V
Sbjct: 311 KKKERSLSSGSNFC-----SEQKTSGIINKFCSAKDSEHNEKYEDTFLESEEIGTKVEVV 365
Query: 294 ERKAEVVED-----SEIKNEGLP-KKDLTAKTRKKKNGIPTAEKTKRK------------ 335
ERK + D SE+ N P +KD T + +++ IP + +RK
Sbjct: 366 ERKEHLHTDILKRGSEMDNNCSPTRKDFTGEKIFQEDTIPRTQIERRKTSLYFSSKYNKE 425
Query: 336 ---PPLRKKFKFW 345
PP RK FK W
Sbjct: 426 ALSPPRRKAFKKW 438
>sp|Q96NB3|ZN830_HUMAN Zinc finger protein 830 OS=Homo sapiens GN=ZNF830 PE=1 SV=2
Length = 372
Score = 33.5 bits (75), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 196 VELPLMSSKKTKEWSCALCQVSATSERGLDEHLQGKKHKAKEAGL 240
+E P + + SCALC SE H+ GK+H+ K A L
Sbjct: 38 IESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHREKVAEL 82
>sp|Q3MHS2|ZN830_RAT Zinc finger protein 830 OS=Rattus norvegicus GN=Znf830 PE=2 SV=1
Length = 370
Score = 33.1 bits (74), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Query: 196 VELPLMSSKKTKEWSCALCQVSATSERGLDEHLQGKKHKAKEAGLLRAQKMCNN-SISSM 254
+E P + + SCALC SE H+ GK+H+ + A L A+ S +
Sbjct: 38 IESPFAKYNRLGQLSCALCNTPVKSELLWQTHVLGKQHRERVAELKGAKGATQGPSAGTA 97
Query: 255 SKKSGKKIKLRESKDSSGQEMKTDVEEESTEVNKA 289
+ + +K ES+D+ + D + ST + A
Sbjct: 98 PQPTKRKTTDVESQDAKKAKASVDQVQPSTSASSA 132
>sp|Q28EG9|ZMAT1_XENTR Zinc finger matrin-type protein 1 OS=Xenopus tropicalis GN=zmat1
PE=2 SV=1
Length = 553
Score = 33.1 bits (74), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 30/60 (50%)
Query: 209 WSCALCQVSATSERGLDEHLQGKKHKAKEAGLLRAQKMCNNSISSMSKKSGKKIKLRESK 268
+ C +C ++ TS H+QG KH+ KE+ + K + S + IK+++++
Sbjct: 275 YVCPICNITLTSIEMYQSHMQGNKHQIKESMVANLMKTSKKNYDSFQDELADYIKVQKAR 334
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.126 0.354
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 173,737,094
Number of Sequences: 539616
Number of extensions: 7500904
Number of successful extensions: 31837
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 615
Number of HSP's that attempted gapping in prelim test: 30067
Number of HSP's gapped (non-prelim): 1972
length of query: 463
length of database: 191,569,459
effective HSP length: 121
effective length of query: 342
effective length of database: 126,275,923
effective search space: 43186365666
effective search space used: 43186365666
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 63 (28.9 bits)