BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012464
         (463 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
 pdb|3MKT|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
 pdb|3MKU|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
 pdb|3MKU|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
          Length = 460

 Score = 61.6 bits (148), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 96/450 (21%), Positives = 178/450 (39%), Gaps = 45/450 (10%)

Query: 9   EELNSLRKIACPVAITGLLFQFKSIISMLFLGHLGDIELAGGSLSLGIANITGYSVL--K 66
           +E ++L K+A PV I  +       +  +  G +  I++A  S++   A+I   S+L   
Sbjct: 9   KEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIA---ASIWLPSILFGV 65

Query: 67  GLAMGMEPICSQAYGAKKGTILSQACRRTXXXXXXXXXXXXXXWVNIEHILLSLGQEQAI 126
           GL M + P+ +Q  GA +   +     +                   + I+  +  E+A+
Sbjct: 66  GLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAM 125

Query: 127 ISVAKVY---IIYSIPELIAQALLNPLRIFLRTQNINKPLTIAASFALIFHIAINIILAM 183
            +    Y   +I+++P   A  L   LR F    ++ KP  +     L+ +I +N I   
Sbjct: 126 ATKTVGYMHAVIFAVP---AYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVY 182

Query: 184 ----VLNLGVRGVALAAASHTFIVILGLLVYLIFSR---------TALKPWDWQAVDSCN 230
                  LG  G  +A A   +I++L LL Y++ S+         T  KP   + +    
Sbjct: 183 GKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFR 242

Query: 231 QGWWXXXXXXXXXXXXXXXEWWWYEIMLI-MCGLLSDPQAS--VSAMGILIQTTGLLYVF 287
            G+                   ++E+ L  +  LL  P  S  V+A  + +  + L+++F
Sbjct: 243 LGFPVAAAL-------------FFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVFMF 289

Query: 288 PNSLNQGLSTLVGQALGAEQPGRAQRTTIMGIIVAFVGGLLASAFAFAVRDAWGKLYTSE 347
           P S+   +S  VG  LG +    A     +G++       + +      R+    LYT  
Sbjct: 290 PMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTEN 349

Query: 348 SAVLALTKAALPILGLCELGNCPQTAACGILLGSARPKLGVCINFCAFYIIGLPVAALMA 407
             V+AL    L    + +  +  Q  A G L G           F +++++GLP   ++ 
Sbjct: 350 QVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILG 409

Query: 408 F-----ELKIGFLGLWYGLAAAQASCVVMM 432
                 E  +G  G W G     ++  +M+
Sbjct: 410 MTNWLTEQPLGAKGFWLGFIIGLSAAALML 439


>pdb|4HUK|A Chain A, Mate Transporter Norm-ng In Complex With Tpp And Monobody
 pdb|4HUL|A Chain A, Mate Transporter Norm-ng In Complex With Cs+ And Monobody
 pdb|4HUM|A Chain A, Mate Transporter Norm-ng In Complex With Ethidium And
           Monobody
 pdb|4HUN|A Chain A, Mate Transporter Norm-ng In Complex With R6g And Monobody
          Length = 459

 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 86/190 (45%), Gaps = 8/190 (4%)

Query: 271 VSAMGILIQTTGLLYVFPNSLNQGLSTLVGQALGAEQPGRAQRTTIMGIIVAFVGGLLAS 330
           V+A  + I  +G+LY+ P S+    +  +G +LG  +  RA+  + + ++  +V  ++  
Sbjct: 276 VAAQQVGISLSGILYMIPQSVGSAGTVRIGFSLGRREFSRARYISGVSLVSGWVLAVITV 335

Query: 331 AFAFAVRDAWGKLYTSESAVLALTKAALPILGLCELGNCPQTAACGILLGSARPKLGVCI 390
                 R     +Y  + AVL++    L   GL +  +  Q  A   L G    K+ + I
Sbjct: 336 LSLVLFRSPLASMYNDDPAVLSIASTVLLFAGLFQPADFTQCIASYALRGYKVTKVPMFI 395

Query: 391 NFCAFYIIGLPVAALMAFELKIGFLGLWYGLAAAQASCVVMMIITLFCTDWKLQAQRAKE 450
           +  AF+  GL    L+A+   +G  G W  L A+     V ++       W L+ + + E
Sbjct: 396 HAAAFWGCGLLPGYLLAYRFDMGIYGFWTALIASLTIAAVALV-------WCLE-KYSME 447

Query: 451 LTQSSEEEAS 460
           L +S +  +S
Sbjct: 448 LVKSHKAVSS 457


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.139    0.425 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,592,767
Number of Sequences: 62578
Number of extensions: 353659
Number of successful extensions: 898
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 895
Number of HSP's gapped (non-prelim): 4
length of query: 463
length of database: 14,973,337
effective HSP length: 102
effective length of query: 361
effective length of database: 8,590,381
effective search space: 3101127541
effective search space used: 3101127541
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)