Query 012464
Match_columns 463
No_of_seqs 263 out of 1723
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 02:55:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012464.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012464hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 1.6E-58 3.4E-63 443.1 53.6 437 7-447 12-451 (455)
2 PRK10189 MATE family multidrug 100.0 4.8E-54 1E-58 416.2 55.3 433 9-444 26-467 (478)
3 PRK00187 multidrug efflux prot 100.0 7.3E-54 1.6E-58 415.1 54.4 432 7-441 5-446 (464)
4 PRK01766 multidrug efflux prot 100.0 4.7E-52 1E-56 404.2 54.6 440 1-443 1-446 (456)
5 PRK09575 vmrA multidrug efflux 100.0 4.2E-51 9.2E-56 395.3 52.2 431 5-442 5-438 (453)
6 PRK10367 DNA-damage-inducible 100.0 1.7E-50 3.6E-55 387.9 52.9 424 8-443 5-434 (441)
7 TIGR01695 mviN integral membra 100.0 2.9E-38 6.2E-43 312.4 51.9 413 14-439 2-428 (502)
8 TIGR02900 spore_V_B stage V sp 100.0 9.3E-38 2E-42 307.8 47.0 416 15-439 2-434 (488)
9 TIGR00797 matE putative efflux 100.0 3.8E-37 8.1E-42 289.3 42.8 338 20-361 1-341 (342)
10 KOG1347 Uncharacterized membra 100.0 1.6E-38 3.5E-43 301.9 32.4 448 8-458 24-471 (473)
11 PRK15099 O-antigen translocase 100.0 6.4E-36 1.4E-40 287.6 46.1 405 14-437 3-410 (416)
12 PF03023 MVIN: MviN-like prote 100.0 1.5E-30 3.4E-35 250.1 49.6 386 42-439 5-403 (451)
13 COG0728 MviN Uncharacterized m 100.0 7.6E-29 1.7E-33 233.6 49.8 422 9-439 4-437 (518)
14 PRK10459 colanic acid exporter 100.0 2.1E-29 4.4E-34 248.2 46.5 399 10-438 3-404 (492)
15 COG2244 RfbX Membrane protein 100.0 1.7E-26 3.8E-31 226.9 41.4 390 9-421 3-394 (480)
16 COG0534 NorM Na+-driven multid 99.9 6.3E-23 1.4E-27 197.4 27.0 210 229-441 12-223 (455)
17 PRK10367 DNA-damage-inducible 99.9 6.4E-23 1.4E-27 197.3 25.9 208 229-438 4-211 (441)
18 PRK00187 multidrug efflux prot 99.9 1.5E-22 3.4E-27 196.5 25.7 207 229-439 5-215 (464)
19 PRK10189 MATE family multidrug 99.9 3.7E-22 8.1E-27 193.9 25.2 207 229-438 24-236 (478)
20 PRK01766 multidrug efflux prot 99.9 2.8E-21 6E-26 188.4 27.2 209 229-440 7-219 (456)
21 PRK09575 vmrA multidrug efflux 99.9 1.7E-21 3.6E-26 189.0 25.3 209 229-439 7-215 (453)
22 PF01943 Polysacc_synt: Polysa 99.8 2.1E-17 4.5E-22 150.2 33.3 271 14-302 1-272 (273)
23 TIGR01695 mviN integral membra 99.8 6.6E-17 1.4E-21 160.2 32.3 204 8-213 219-427 (502)
24 TIGR00797 matE putative efflux 99.8 6.3E-18 1.4E-22 158.9 23.1 194 242-438 1-196 (342)
25 PF01554 MatE: MatE; InterPro 99.8 3.1E-19 6.7E-24 148.5 8.7 162 242-405 1-162 (162)
26 PF03023 MVIN: MviN-like prote 99.8 1.9E-15 4E-20 145.9 31.2 207 8-216 194-405 (451)
27 PF01554 MatE: MatE; InterPro 99.8 1.9E-18 4.2E-23 143.7 8.1 160 20-180 1-162 (162)
28 TIGR02900 spore_V_B stage V sp 99.7 2.2E-15 4.8E-20 148.7 25.0 201 8-213 221-433 (488)
29 COG0728 MviN Uncharacterized m 99.7 1.8E-13 3.9E-18 130.1 35.6 231 9-249 229-464 (518)
30 PF13440 Polysacc_synt_3: Poly 99.7 1.2E-13 2.6E-18 123.7 31.8 248 30-302 2-251 (251)
31 PRK10459 colanic acid exporter 99.7 5.7E-13 1.2E-17 131.5 35.0 199 8-212 203-403 (492)
32 PRK15099 O-antigen translocase 99.6 1.7E-13 3.6E-18 132.2 26.2 199 7-212 210-410 (416)
33 COG2244 RfbX Membrane protein 99.6 1.7E-12 3.7E-17 127.9 26.7 186 8-199 209-396 (480)
34 PF04506 Rft-1: Rft protein; 99.5 3.5E-10 7.6E-15 110.1 33.2 421 16-439 5-470 (549)
35 KOG2864 Nuclear division RFT1 99.3 4.2E-08 9.1E-13 89.4 34.8 419 9-438 5-448 (530)
36 KOG1347 Uncharacterized membra 99.3 8.2E-11 1.8E-15 112.9 18.9 206 230-439 24-230 (473)
37 PF07260 ANKH: Progressive ank 99.1 6E-07 1.3E-11 78.5 30.0 322 1-333 1-342 (345)
38 PF14667 Polysacc_synt_C: Poly 98.6 1.9E-05 4E-10 64.0 18.7 79 134-214 2-80 (146)
39 PF01943 Polysacc_synt: Polysa 98.4 8.9E-05 1.9E-09 67.0 20.0 187 238-438 3-190 (273)
40 PF04506 Rft-1: Rft protein; 98.3 0.00027 5.8E-09 69.5 22.5 203 11-214 252-470 (549)
41 PF07260 ANKH: Progressive ank 98.1 0.0016 3.4E-08 57.7 21.6 160 229-394 6-168 (345)
42 PF14667 Polysacc_synt_C: Poly 98.1 2.5E-05 5.3E-10 63.3 9.4 79 358-439 2-80 (146)
43 PF13440 Polysacc_synt_3: Poly 98.0 0.0018 3.9E-08 57.6 20.7 166 255-437 5-171 (251)
44 KOG2864 Nuclear division RFT1 97.6 0.039 8.6E-07 51.5 22.3 201 10-212 237-447 (530)
45 COG4267 Predicted membrane pro 97.2 0.17 3.6E-06 46.3 36.1 320 58-405 70-411 (467)
46 TIGR00822 EII-Sor PTS system, 67.7 92 0.002 27.8 16.0 34 283-316 108-141 (265)
47 PF05975 EcsB: Bacterial ABC t 67.7 1.2E+02 0.0025 29.1 15.5 36 307-342 89-124 (386)
48 COG4267 Predicted membrane pro 67.0 1.1E+02 0.0025 28.7 19.0 133 289-438 78-210 (467)
49 PF04505 Dispanin: Interferon- 66.2 38 0.00082 24.0 6.5 43 288-330 33-75 (82)
50 PRK09757 PTS system N-acetylga 47.4 2.1E+02 0.0046 25.6 15.1 33 284-316 110-142 (267)
51 PF03904 DUF334: Domain of unk 38.9 1.4E+02 0.003 25.8 6.5 40 83-122 141-180 (230)
52 COG0798 ACR3 Arsenite efflux p 35.0 3.8E+02 0.0082 24.9 26.4 31 413-443 302-333 (342)
53 PF06808 DctM: DctM-like trans 28.2 5.6E+02 0.012 24.8 13.6 82 229-333 205-286 (416)
54 COG0798 ACR3 Arsenite efflux p 26.8 5.2E+02 0.011 24.0 15.4 26 189-214 304-329 (342)
55 PTZ00370 STEVOR; Provisional 25.9 1.8E+02 0.0039 26.1 5.4 31 416-446 258-291 (296)
56 TIGR00220 mscL large conductan 23.7 1E+02 0.0022 23.9 3.2 21 416-436 69-89 (127)
57 COG4736 CcoQ Cbb3-type cytochr 23.2 1.8E+02 0.0038 19.2 3.7 18 433-450 26-43 (60)
58 TIGR00383 corA magnesium Mg(2+ 23.0 1.9E+02 0.0041 26.6 5.6 57 381-441 252-317 (318)
59 PRK13955 mscL large-conductanc 21.5 1.3E+02 0.0028 23.5 3.3 21 416-436 67-87 (130)
60 PF03547 Mem_trans: Membrane t 20.9 7.1E+02 0.015 23.5 9.7 15 320-334 35-49 (385)
61 PRK13954 mscL large-conductanc 20.7 85 0.0018 24.0 2.2 21 416-436 64-84 (119)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=1.6e-58 Score=443.10 Aligned_cols=437 Identities=24% Similarity=0.356 Sum_probs=413.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhHHHhHHHHHHHHHHHHHHHHHhhHHHHHhhhhCCCChh
Q 012464 7 VAEELNSLRKIACPVAITGLLFQFKSIISMLFLGHLGDIELAGGSLSLGIANITGYSVLKGLAMGMEPICSQAYGAKKGT 86 (463)
Q Consensus 7 ~~~~~k~i~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 86 (463)
.++..|+++++++|++++++.+.+++++|++++||+|++++++.+++.++.... ..+..|++.|.++.+||++|+||++
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchH
Confidence 355899999999999999999999999999999999999999999999999998 9999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCchHHHH
Q 012464 87 ILSQACRRTLSILIVIIFPIS-ILWVNIEHILLSLGQEQAIISVAKVYIIYSIPELIAQALLNPLRIFLRTQNINKPLTI 165 (463)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 165 (463)
++++..++++.+..+++++.. +...+.++++.+++.++|+.+.+.+|+++..++.|+..++...++++|+.||++.+++
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 999999999999999998777 4589999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh-hC-cccchHHHHHHHHHHHHHHHHHHHHHhcccCCCcCCCCCchhhhhhHHHHHHHHhhh
Q 012464 166 AASFALIFHIAINIILAMV-LN-LGVRGVALAAASHTFIVILGLLVYLIFSRTALKPWDWQAVDSCNQGWWSLLSLMLPS 243 (463)
Q Consensus 166 ~~~~~~~~~i~~~~~li~~-~~-~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 243 (463)
.+++++++|++++++++++ ++ +|+.|+++||++++.+.+++...++.++++..........+++++..|++++.|+|.
T Consensus 171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~ 250 (455)
T COG0534 171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI 250 (455)
T ss_pred HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence 9999999999999999999 47 999999999999999999999999977664211111122355899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHH
Q 012464 244 LLSICLEWWWYEIMLIMCGLLSDPQASVSAMGILIQTTGLLYVFPNSLNQGLSTLVGQALGAEQPGRAQRTTIMGIIVAF 323 (463)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~ 323 (463)
.+++..+...+...+.++++++ ++.+|+|+++.++.++..++..+++++..|.+++++|+||++++++..+.+.++++
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~ 328 (455)
T COG0534 251 FLESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSL 328 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHH
Q 012464 324 VGGLLASAFAFAVRDAWGKLYTSESAVLALTKAALPILGLCELGNCPQTAACGILLGSARPKLGVCINFCAFYIIGLPVA 403 (463)
Q Consensus 324 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~i~~~ 403 (463)
.++...+++++++++++.++|++|+|+.+.+..++++.+...++++.+.+..+.+|+.||+|.++..++.+.|.+.+|+.
T Consensus 329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~ 408 (455)
T COG0534 329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLA 408 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Q 012464 404 ALMAFELKIGFLGLWYGLAAAQASCVVMMIITLFCTDWKLQAQR 447 (463)
Q Consensus 404 ~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (463)
++++... +|..|+|++...++.++.+...+++++++|+++..+
T Consensus 409 ~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (455)
T COG0534 409 YLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKAVA 451 (455)
T ss_pred HHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 9999877 899999999999999999999999999999876544
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=4.8e-54 Score=416.17 Aligned_cols=433 Identities=15% Similarity=0.183 Sum_probs=400.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhHHHhHHHHHHHHHHHHHHHHHhhHHHHHhhhhCCCChhhH
Q 012464 9 EELNSLRKIACPVAITGLLFQFKSIISMLFLGHLGDIELAGGSLSLGIANITGYSVLKGLAMGMEPICSQAYGAKKGTIL 88 (463)
Q Consensus 9 ~~~k~i~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~ 88 (463)
+..|++++.++|.+++++...+.+.+|..+++++|++++++++++.++..+. ..+..|++++.++.++|++|++|+|++
T Consensus 26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~-~~~~~gl~~g~~~lvsq~~Ga~~~~~~ 104 (478)
T PRK10189 26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVI-MAFFAAIDLGTTVVVAFSLGKRDRRRA 104 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 4589999999999999999999999999999999999999999999998887 899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcC--CChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCchHHHH
Q 012464 89 SQACRRTLSILIVIIFPISIL-WVNIEHILLSLG--QEQAIISVAKVYIIYSIPELIAQALLNPLRIFLRTQNINKPLTI 165 (463)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 165 (463)
++..++++.+..+++++.+++ +.+.+++..++. .|+|+.+.+.+|+++..++.|+..+....++++|+.||++.+++
T Consensus 105 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 184 (478)
T PRK10189 105 RAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLL 184 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHH
Confidence 999999999999999988854 778889999884 68999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh----CcccchHHHHHHHHHHHHHHHHHHHHHhcccC--CCcCCCCCchhhhhhHHHHHHH
Q 012464 166 AASFALIFHIAINIILAMVL----NLGVRGVALAAASHTFIVILGLLVYLIFSRTA--LKPWDWQAVDSCNQGWWSLLSL 239 (463)
Q Consensus 166 ~~~~~~~~~i~~~~~li~~~----~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 239 (463)
.+++..++|++++++++++. ++|+.|+++|+.+++.+..++..+++.++++. +.++++...+++++.+|++++.
T Consensus 185 i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~i 264 (478)
T PRK10189 185 INGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWEVMGI 264 (478)
T ss_pred HHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHHHHHH
Confidence 99999999999999999864 78999999999999999988876665443221 1122111113478899999999
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHH
Q 012464 240 MLPSLLSICLEWWWYEIMLIMCGLLSDPQASVSAMGILIQTTGLLYVFPNSLNQGLSTLVGQALGAEQPGRAQRTTIMGI 319 (463)
Q Consensus 240 ~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~ 319 (463)
|.|..++...........+.++++++ ++++|+|+++.++.++..++..+++++..|.+++++|+||.+++|+..+.+.
T Consensus 265 G~P~~~~~~~~~~~~~~~~~~~~~~G--~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~~~~~ 342 (478)
T PRK10189 265 GIPASIESVLFNGGKLLTQMFVAGMG--TSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQAERQLRHVF 342 (478)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999998888888899988 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcCCCcchHHHHHHHHHHHH
Q 012464 320 IVAFVGGLLASAFAFAVRDAWGKLYTSESAVLALTKAALPILGLCELGNCPQTAACGILLGSARPKLGVCINFCAFYIIG 399 (463)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~ 399 (463)
++++.++..++++++.+++++.++|++|+|+.+.+..++++.+...++++.+.+..+.+++.||++.++..++.+.|++.
T Consensus 343 ~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~~~~~~v~ 422 (478)
T PRK10189 343 WLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMWVSMLGMWGCR 422 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhccHHHH
Q 012464 400 LPVAALMAFELKIGFLGLWYGLAAAQASCVVMMIITLFCTDWKLQ 444 (463)
Q Consensus 400 i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 444 (463)
+|+.+++....++|..|+|++..+++.+..++.++++++.+|+++
T Consensus 423 ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~~ 467 (478)
T PRK10189 423 VVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLWK 467 (478)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCccccC
Confidence 999999988888999999999999999999999999999999883
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=7.3e-54 Score=415.10 Aligned_cols=432 Identities=21% Similarity=0.285 Sum_probs=394.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhHHHhHHHHHHHHHHHHHHHHHhhHHHHHhhhhCCCChh
Q 012464 7 VAEELNSLRKIACPVAITGLLFQFKSIISMLFLGHLGDIELAGGSLSLGIANITGYSVLKGLAMGMEPICSQAYGAKKGT 86 (463)
Q Consensus 7 ~~~~~k~i~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 86 (463)
.+++.|++++.++|.+++++...+.+.+|+.+++|+|++++++++++.++.++. ..+..|++++.++.+||++|++|+|
T Consensus 5 ~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~-~~~~~gl~~~~~~i~aq~~Ga~~~~ 83 (464)
T PRK00187 5 PTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFV-SIFCVGVIAAVGTLVAIRHGAGDIE 83 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCChh
Confidence 356799999999999999999999999999999999999999999999998887 7888999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCchHHHHH
Q 012464 87 ILSQACRRTLSILIVIIFPISILWVNIEHILLSLGQEQAIISVAKVYIIYSIPELIAQALLNPLRIFLRTQNINKPLTIA 166 (463)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 166 (463)
++++.+++++.+..+++++..++..+.++++.+++.|+|+.+.+.+|+++..++.++..+....++++|+.|+++.+++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~ 163 (464)
T PRK00187 84 GATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVI 163 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 99999999999999999988766557799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh----CcccchHHHHHHHHHHHHHHHHHHHHHhcccC-CCcCCCCCchhhhhhHHHHHHHHh
Q 012464 167 ASFALIFHIAINIILAMVL----NLGVRGVALAAASHTFIVILGLLVYLIFSRTA-LKPWDWQAVDSCNQGWWSLLSLML 241 (463)
Q Consensus 167 ~~~~~~~~i~~~~~li~~~----~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 241 (463)
++++.++|++++++++++. ++|+.|+++|+.+++....+....+++++++. +.+..+...+++++..|++++.++
T Consensus 164 ~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~ 243 (464)
T PRK00187 164 SLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGL 243 (464)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhh
Confidence 9999999999999999864 58999999999999988887776666544322 122111113447888999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHH
Q 012464 242 PSLLSICLEWWWYEIMLIMCGLLSDPQASVSAMGILIQTTGLLYVFPNSLNQGLSTLVGQALGAEQPGRAQRTTIMGIIV 321 (463)
Q Consensus 242 p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~ 321 (463)
|..++++.+...+.+++.++++++ ++++|+++++.++..+...+..+++++..+.++|++|+||++++++..+.++.+
T Consensus 244 P~~~~~~~~~~~~~i~~~~i~~~G--~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~~ 321 (464)
T PRK00187 244 PIGGTYAVEVGLFTFAALCMGALG--STQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIGF 321 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999998 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCCC--hH---HHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcCCCcchHHHHHHHHH
Q 012464 322 AFVGGLLASAFAFAVRDAWGKLYTS--ES---AVLALTKAALPILGLCELGNCPQTAACGILLGSARPKLGVCINFCAFY 396 (463)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~i~~l~~~--~~---~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 396 (463)
+..++++.+++++++++++.+++++ |+ |+.+.+..++++.+++.++++++.+..+.+++.||+|.++..++++.|
T Consensus 322 ~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~~ 401 (464)
T PRK00187 322 GAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACYW 401 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHHHH
Confidence 9999999999999999999999964 44 688899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhccH
Q 012464 397 IIGLPVAALMAFELKIGFLGLWYGLAAAQASCVVMMIITLFCTDW 441 (463)
Q Consensus 397 ~i~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~ 441 (463)
++++|+.+++.+.+++|+.|+|+++.+++.+..+....++++++|
T Consensus 402 ~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~~~~ 446 (464)
T PRK00187 402 LVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEWKTA 446 (464)
T ss_pred HHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888999999999999999998877766654433
No 4
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=4.7e-52 Score=404.22 Aligned_cols=440 Identities=23% Similarity=0.333 Sum_probs=405.2
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhHHHhHHHHHHHHHHHHHHHHHhhHHHHHhhhh
Q 012464 1 MCDLMQVAEELNSLRKIACPVAITGLLFQFKSIISMLFLGHLGDIELAGGSLSLGIANITGYSVLKGLAMGMEPICSQAY 80 (463)
Q Consensus 1 ~~~~~~~~~~~k~i~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~ 80 (463)
|+|.++.++..|++++.++|.+++++...+.+.+|..+++++|++++++++++.++.... ..+..|++.+..+.+||++
T Consensus 1 ~~~~~~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~-~~~~~g~~~a~~~~vs~~~ 79 (456)
T PRK01766 1 MKETQKYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPV-ILFGHGLLLALTPIVAQLN 79 (456)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHh
Confidence 788999999999999999999999999999999999999999999999999999987776 7888999999999999999
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCC
Q 012464 81 GAKKGTILSQACRRTLSILIVIIFPISIL-WVNIEHILLSLGQEQAIISVAKVYIIYSIPELIAQALLNPLRIFLRTQNI 159 (463)
Q Consensus 81 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 159 (463)
|++|+++.++.++.++.+..+++++..++ ..+.+++..+++.|++..+.+.+|+++.+++.++..+....++++++.|+
T Consensus 80 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~ 159 (456)
T PRK01766 80 GAGRRERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGK 159 (456)
T ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999888755 67778899999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhh----CcccchHHHHHHHHHHHHHHHHHHHHHhcccCC-CcCCCCCchhhhhhHH
Q 012464 160 NKPLTIAASFALIFHIAINIILAMVL----NLGVRGVALAAASHTFIVILGLLVYLIFSRTAL-KPWDWQAVDSCNQGWW 234 (463)
Q Consensus 160 ~~~~~~~~~~~~~~~i~~~~~li~~~----~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 234 (463)
++.+++.++++.++|+++++++++.. ++|+.|+++++.+++.+..++..++.+++++.+ .+......+++++..|
T Consensus 160 ~~~~~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 239 (456)
T PRK01766 160 TKPTMVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIK 239 (456)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHH
Confidence 99999999999999999999998642 589999999999999999998887775443221 1111111234778899
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCChhhHHHH
Q 012464 235 SLLSLMLPSLLSICLEWWWYEIMLIMCGLLSDPQASVSAMGILIQTTGLLYVFPNSLNQGLSTLVGQALGAEQPGRAQRT 314 (463)
Q Consensus 235 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~~~~~~~ 314 (463)
++++.++|..+++..+...+..+..++++++ ++++++++++.++.++...+..+++.+..|.++|++|+||++++++.
T Consensus 240 ~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~ 317 (456)
T PRK01766 240 RLLKLGLPIGLAIFFEVSLFAVVTLLVSPLG--TVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQY 317 (456)
T ss_pred HHHHccchHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 9999999999999999999999999999987 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcCCCcchHHHHHHH
Q 012464 315 TIMGIIVAFVGGLLASAFAFAVRDAWGKLYTSESAVLALTKAALPILGLCELGNCPQTAACGILLGSARPKLGVCINFCA 394 (463)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 394 (463)
.+.++++++.++++.++++..+++++.++|++|+|+.+.+..++++..+..++++++....+.+++.||++.++..++++
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~ 397 (456)
T PRK01766 318 AYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIA 397 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhccHHH
Q 012464 395 FYIIGLPVAALMAFELKIGFLGLWYGLAAAQASCVVMMIITLFCTDWKL 443 (463)
Q Consensus 395 ~~~i~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~ 443 (463)
.|++++|..+++...+++|..|+|+++.+++.+..++.++++++.+|+.
T Consensus 398 ~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (456)
T PRK01766 398 YWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKLQRQP 446 (456)
T ss_pred HHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9899999999998888899999999999999999999988888876654
No 5
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=4.2e-51 Score=395.34 Aligned_cols=431 Identities=17% Similarity=0.185 Sum_probs=393.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHhHHHhHHHHHHHHHHHHHHHHHhhHHHHHhhhhCCC
Q 012464 5 MQVAEELNSLRKIACPVAITGLLFQFKSIISMLFLGH-LGDIELAGGSLSLGIANITGYSVLKGLAMGMEPICSQAYGAK 83 (463)
Q Consensus 5 ~~~~~~~k~i~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~ 83 (463)
+..++..|++++.++|.+++++...+.+++|+.+++| .|++++++++++.++..+. ..+..+++.+.++.++|++|++
T Consensus 5 ~~~~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~-~~~~~~~~~g~~~lvsq~~Ga~ 83 (453)
T PRK09575 5 MMNQSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGII-LGIGLMVGMGTGSLLSIKRGEG 83 (453)
T ss_pred hccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH-HHHHHHHhccHHHHHHHHhcCC
Confidence 3456788999999999999999999999999999999 6999999999999998887 7888899999999999999999
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCchH
Q 012464 84 KGTILSQACRRTLSILIVIIFPISIL-WVNIEHILLSLGQEQAIISVAKVYIIYSIPELIAQALLNPLRIFLRTQNINKP 162 (463)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 162 (463)
|+|+.++.+++++.+..+++++..++ ..+.++++.+++.|++..+.+.+|+++..++.++..+......++|+.|+++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~ 163 (453)
T PRK09575 84 DLEKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNL 163 (453)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHH
Confidence 99999999999999999999988754 78899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHHHHHHHHHHHHhcccCCCcCCCCCchhhhhhHHHHHHHHhh
Q 012464 163 LTIAASFALIFHIAINIILAMVLNLGVRGVALAAASHTFIVILGLLVYLIFSRTALKPWDWQAVDSCNQGWWSLLSLMLP 242 (463)
Q Consensus 163 ~~~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 242 (463)
++..++.+.++|+++++++++.+++|+.|+++++.+++.+..++..++++++++ +.+++..+++++++..|++++.|.|
T Consensus 164 ~~~~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~il~ig~P 242 (453)
T PRK09575 164 ATGLMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRA-NIRLTLKELRFNWSLAPKIVLLGSS 242 (453)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCc-eeEEeeccCCcCHHHHHHHHHhChh
Confidence 999999999999999999998888999999999999999999888777654332 2333222335578889999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHH
Q 012464 243 SLLSICLEWWWYEIMLIMCGLLSDPQASVSAMGILIQTTGLLYVFPNSLNQGLSTLVGQALGAEQPGRAQRTTIMGIIVA 322 (463)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~ 322 (463)
..+++....+.....+.+++++++ ++++|+++++.++..+...+..+++++..|.++|++|+||+|++++..+.+++++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~g~-~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~ 321 (453)
T PRK09575 243 SFFMYLYGSFVVALHNRLFMEYGS-ALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVT 321 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHH
Confidence 999999999999998999999883 5789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhccCCC-hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcCCCcchHHHHHHHHHHHHHH
Q 012464 323 FVGGLLASAFAFAVRDAWGKLYTS-ESAVLALTKAALPILGLCELGNCPQTAACGILLGSARPKLGVCINFCAFYIIGLP 401 (463)
Q Consensus 323 ~~~~~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~i~ 401 (463)
+..+++.++++..+++++.++|++ |||+.+.+.+++++.+++.+++++..+..+.+++.||++.++..++... .+++|
T Consensus 322 ~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~v~ip 400 (453)
T PRK09575 322 VLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGNM-LIQLP 400 (453)
T ss_pred HHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHhH-HHHHH
Confidence 999999999999999999999995 7899999999999999999999999999999999999999999998765 78999
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhccHH
Q 012464 402 VAALMAFELKIGFLGLWYGLAAAQASCVVMMIITLFCTDWK 442 (463)
Q Consensus 402 ~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~ 442 (463)
..++++.. +|+.|+|+++.+++.+..++....+++ +++
T Consensus 401 ~~~ll~~~--~G~~Gvw~a~~~~~~~~~~~~~~~~~~-~~~ 438 (453)
T PRK09575 401 FLFILPKW--LGVDGVWLAMPLSNIALSLVVAPMLWR-DVK 438 (453)
T ss_pred HHHHHHHH--HCcchHhhHHHHHHHHHHHHHHHHHHH-HHH
Confidence 99998765 799999999999999988877766654 443
No 6
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=1.7e-50 Score=387.93 Aligned_cols=424 Identities=17% Similarity=0.177 Sum_probs=373.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-ChhhHhHHHhHHHHHHHHHHHHHHHHHhhHHHHHhhhhCCCChh
Q 012464 8 AEELNSLRKIACPVAITGLLFQFKSIISMLFLGHL-GDIELAGGSLSLGIANITGYSVLKGLAMGMEPICSQAYGAKKGT 86 (463)
Q Consensus 8 ~~~~k~i~~~~~p~~~~~~~~~l~~~i~~~~i~~l-g~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 86 (463)
.++.|+++++++|.++++++..+.+.+|..+++|+ |++++++++++.++..+. ..+..+++.+.++.+||++|++|+|
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFL-FMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 46689999999999999999999999999999997 777999999999999888 8889999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCchHHHH
Q 012464 87 ILSQACRRTLSILIVIIFPISIL-WVNIEHILLSLGQEQAIISVAKVYIIYSIPELIAQALLNPLRIFLRTQNINKPLTI 165 (463)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 165 (463)
++++..++++.+..+++++..+. ..+.++++.+++.|+|+.+.+.+|+++..++.|+..+..+.++++|+.||++.+++
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 99999999999999999988754 67888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHHHHHHHHHHHHhcccCCCcCCCCCchhh-hhhHHHHHHHHhhhH
Q 012464 166 AASFALIFHIAINIILAMVLNLGVRGVALAAASHTFIVILGLLVYLIFSRTALKPWDWQAVDSC-NQGWWSLLSLMLPSL 244 (463)
Q Consensus 166 ~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~ 244 (463)
..+++.++|+++++++++..++|+.|+++|+.+++.+.+++...+++++++.+ +.+...++++ ++..|++++.|.|..
T Consensus 164 ~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~il~ig~P~~ 242 (441)
T PRK10367 164 LLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLR-GISLEMLKTAWRGNFRRLLALNRDIM 242 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccHHHhhhhhHHHHHHHHHhCchHH
Confidence 99999999999999999988999999999999999999888777775433221 1111112223 357899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHH
Q 012464 245 LSICLEWWWYEIMLIMCGLLSDPQASVSAMGILIQTTGLLYVFPNSLNQGLSTLVGQALGAEQPGRAQRTTIMGIIVAFV 324 (463)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~ 324 (463)
+++..+...+.+.+.++++++ ++++|+|+++.++.++..++..|++++..|.++|++|+||++++|+..+++.+++..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~G--~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~ 320 (441)
T PRK10367 243 LRSLLLQLCFGAITVLGARLG--SDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGI 320 (441)
T ss_pred HHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998 889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcC---CCcchHHHHHHHHHHHHHH
Q 012464 325 GGLLASAFAFAVRDAWGKLYTSESAVLALTKAALPILGLCELGNCPQTAACGILLGSA---RPKLGVCINFCAFYIIGLP 401 (463)
Q Consensus 325 ~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g---~~~~~~~~~~~~~~~i~i~ 401 (463)
.+...+++++.+++++..+|++|+|+.+.+..++++.++..+.........+.+++.+ |+|.++..++++.|+..++
T Consensus 321 ~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~~~~~~~~~~~~~~ 400 (441)
T PRK10367 321 VALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAAGFALTLLT 400 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998876443334444444455555 5999999999887632221
Q ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhccHHH
Q 012464 402 VAALMAFELKIGFLGLWYGLAAAQASCVVMMIITLFCTDWKL 443 (463)
Q Consensus 402 ~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~ 443 (463)
. +++|..|+|++..+++.++.++...++++ +|++
T Consensus 401 ~-------~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~-~~~~ 434 (441)
T PRK10367 401 L-------PWLGNHGLWLALTVFLALRGLSLAAIWRR-HWRN 434 (441)
T ss_pred H-------HHcCchHHHHHHHHHHHHHHHHHHHHHHH-HHhc
Confidence 1 24799999999999999999988876666 4854
No 7
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=2.9e-38 Score=312.38 Aligned_cols=413 Identities=15% Similarity=0.098 Sum_probs=349.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhH-hHHHhHHHHHHHHHHHHH-HHHHhhHHHHHhhhhCCCChhhHHH
Q 012464 14 LRKIACPVAITGLLFQFKSIISMLFLGH-LGDIEL-AGGSLSLGIANITGYSVL-KGLAMGMEPICSQAYGAKKGTILSQ 90 (463)
Q Consensus 14 i~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~~~~-~~~~~~~~i~~~~~~~~~-~gl~~~~~~~~s~~~g~~~~~~~~~ 90 (463)
+.|.+.-.+++++++.+.+++|.++++| +|++++ ++++.+.++...+..... .|++++..+...++.+++ |++++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~ 79 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR 79 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence 5788999999999999999999999999 999999 899999999877623333 467888777776664322 67777
Q ss_pred HHHHHHHHHHHHHHHH-HH-HHHHHHHHHHHc--CCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCchHHHHH
Q 012464 91 ACRRTLSILIVIIFPI-SI-LWVNIEHILLSL--GQEQAIISVAKVYIIYSIPELIAQALLNPLRIFLRTQNINKPLTIA 166 (463)
Q Consensus 91 ~~~~~~~~~~~~~~~~-~~-~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 166 (463)
.+.++.....+.+..+ .+ .+.+.+++..++ +.+++..+.+.+|+++..++.++..+....++++|+.+|++.++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (502)
T TIGR01695 80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence 7777776666555543 44 466777787877 4567777899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhCcccchHH--HHHHHHHHHHHHHHHHHHHhcccCCCcCCCCCchhhhhhHHHHHHHHhhhH
Q 012464 167 ASFALIFHIAINIILAMVLNLGVRGVA--LAAASHTFIVILGLLVYLIFSRTALKPWDWQAVDSCNQGWWSLLSLMLPSL 244 (463)
Q Consensus 167 ~~~~~~~~i~~~~~li~~~~~g~~g~a--~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 244 (463)
++..+++++....++. .++|..|++ +++.+++.+..++.+.+.++++.. .+ ++ ++++++..|++++++.|..
T Consensus 160 ~i~~~i~~i~~~~~~~--~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~-~~--~~~~~~~~k~~l~~~~p~~ 233 (502)
T TIGR01695 160 PILFNIGVILSLLFFD--WNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFL-LK-PR--FNFRDPGLKRFLKLFLPTT 233 (502)
T ss_pred HHHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc-cc-Cc--CCCCChhHHHHHHHHHHHH
Confidence 9999888776543333 368999988 999999999988877666543321 11 11 2336788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHH
Q 012464 245 LSICLEWWWYEIMLIMCGLLSDPQASVSAMGILIQTTGLLYV-FPNSLNQGLSTLVGQALGAEQPGRAQRTTIMGIIVAF 323 (463)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~-~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~ 323 (463)
+++....+...+|+.+.+.++ ++++++|+.+.++.+++.. +..+++++..|.+++++|+||++++++..+++.+...
T Consensus 234 ~~~~~~~~~~~id~~~~~~~~--~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~ 311 (502)
T TIGR01695 234 LGSSASQITLLINTALASFLE--IGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSL 311 (502)
T ss_pred HHHHHHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 999999999999998866655 8899999999999998875 5689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhccCCC----hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcCCCcchHHHHHHHHHHHH
Q 012464 324 VGGLLASAFAFAVRDAWGKLYTS----ESAVLALTKAALPILGLCELGNCPQTAACGILLGSARPKLGVCINFCAFYIIG 399 (463)
Q Consensus 324 ~~~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~ 399 (463)
.++.|.++++..+++++.+++.+ |+|..+.+..++++++++.++.+++....+.+++.||+|.+++.++.+. +++
T Consensus 312 ~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~i~ 390 (502)
T TIGR01695 312 LLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVISV-VLN 390 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHHH-HHH
Confidence 99999999999999999999876 5677889999999999999999999999999999999999999999887 788
Q ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 012464 400 LPVAALMAFELKIGFLGLWYGLAAAQASCVVMMIITLFCT 439 (463)
Q Consensus 400 i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 439 (463)
+++++++... +|..|+|+++.+++.+..++..++++|+
T Consensus 391 i~l~~~l~~~--~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 391 ALLSLLLIFP--LGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred HHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9998888655 7999999999999999988887777665
No 8
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=9.3e-38 Score=307.77 Aligned_cols=416 Identities=13% Similarity=0.153 Sum_probs=349.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHhHHHhHHHHHHHHHHHHHHHHHhhHHHHHhhhhCCCChhhHHHHHH
Q 012464 15 RKIACPVAITGLLFQFKSIISMLFLGH-LGDIELAGGSLSLGIANITGYSVLKGLAMGMEPICSQAYGAKKGTILSQACR 93 (463)
Q Consensus 15 ~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~ 93 (463)
.|.+.|.+++++...+.+++|.++++| +|+|++|.++.+.++..+.......|++++..+.+||+.|++|+++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 467899999999999999999999999 8999999999999998887455567999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 012464 94 RTLSILIVIIFPISIL-WVNIEHILLSLGQEQAIISVAKVYIIYSIPELIAQALLNPLRIFLRTQNINKPLTIAASFALI 172 (463)
Q Consensus 94 ~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 172 (463)
+++.+..+.+++..++ ..+.+++...+..+++. ..++++..+..++..+....++++|+.+|++..+..+.++.+
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i 157 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI 157 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence 9999999999988755 56666666666555543 246788888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh-----CcccchHHHHHHHHHHHHHHHHHHHHHhcccCCCcCCCC-CchhhhhhHHHHHHHHhhhHHH
Q 012464 173 FHIAINIILAMVL-----NLGVRGVALAAASHTFIVILGLLVYLIFSRTALKPWDWQ-AVDSCNQGWWSLLSLMLPSLLS 246 (463)
Q Consensus 173 ~~i~~~~~li~~~-----~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~ 246 (463)
+++.++..++..+ +.++.|+++++.+++.+..+....+.+++++.+.+.... ..+.+++..|++++++.|..++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~ 237 (488)
T TIGR02900 158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLS 237 (488)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHH
Confidence 9987766655432 456788889999999999888766654433211111111 1233677899999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCc--h---h---hHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCChhhHHHHHHH
Q 012464 247 ICLEWWWYEIMLIMCGLLSD--P---Q---ASVSAM-GILIQTTGLLYVFPNSLNQGLSTLVGQALGAEQPGRAQRTTIM 317 (463)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~--g---~---~~~a~~-~~~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~ 317 (463)
++...+....|+.++++... | . +..+.| +.+.++..++..+..+++++..|.+++++|+||+++.++..++
T Consensus 238 ~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~ 317 (488)
T TIGR02900 238 RFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQ 317 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999876531 0 1 233333 3566778888777899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcCCCcchHHHHHHHHHH
Q 012464 318 GIIVAFVGGLLASAFAFAVRDAWGKLYTSESAVLALTKAALPILGLCELGNCPQTAACGILLGSARPKLGVCINFCAFYI 397 (463)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 397 (463)
..++...++.|.++++..+++++..++.++++ +.++++++++..++..++....+.+++.||+|.+++.++.+. +
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i 392 (488)
T TIGR02900 318 AIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIGA-I 392 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH-H
Confidence 99999999999999999999999998876543 677899999999999999999999999999999999999987 7
Q ss_pred HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 012464 398 IGLPVAALMAFELKIGFLGLWYGLAAAQASCVVMMIITLFCT 439 (463)
Q Consensus 398 i~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 439 (463)
+++++.+.+...+++|..|+|+++.+++.+..++..+..+|.
T Consensus 393 ~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 393 VKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN 434 (488)
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889988887644568999999999999999999888877653
No 9
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=3.8e-37 Score=289.30 Aligned_cols=338 Identities=25% Similarity=0.393 Sum_probs=308.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhhHhHHHhHHHHHHHHHHHHHHHHHhhHHHHHhhhhCCCChhhHHHHHHHHHHHH
Q 012464 20 PVAITGLLFQFKSIISMLFLGHLGDIELAGGSLSLGIANITGYSVLKGLAMGMEPICSQAYGAKKGTILSQACRRTLSIL 99 (463)
Q Consensus 20 p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 99 (463)
|.+++++...+...+|+.+++++|++++++++.+.++.... ..+..|++++..+.++|+.|++|+|+.++.+++...+.
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~-~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 79 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFL-FSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA 79 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHH-HHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999988877 88899999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH
Q 012464 100 IVIIFPISIL-WVNIEHILLSLGQEQAIISVAKVYIIYSIPELIAQALLNPLRIFLRTQNINKPLTIAASFALIFHIAIN 178 (463)
Q Consensus 100 ~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~ 178 (463)
.+++++.+++ ..+.+++..+++.|++..+++.+|++++.+..++..+..+..+++++.||++.+...++++.+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~ 159 (342)
T TIGR00797 80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN 159 (342)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence 9999998854 778889988888788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-hhC-cccchHHHHHHHHHHHHHHHHHHHHHhcccCCCcCCCCCchhhhhhHHHHHHHHhhhHHHHHHHHHHHHH
Q 012464 179 IILAM-VLN-LGVRGVALAAASHTFIVILGLLVYLIFSRTALKPWDWQAVDSCNQGWWSLLSLMLPSLLSICLEWWWYEI 256 (463)
Q Consensus 179 ~~li~-~~~-~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 256 (463)
+++++ .++ +|+.|+++++.+++.+..++..++.+++++.+.+|++ +.+.+++..|++++++.|..++++..++.+.+
T Consensus 160 ~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~ 238 (342)
T TIGR00797 160 YILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEG-LLKPDWEVLKRLLKLGLPIAFRVILESLSFAL 238 (342)
T ss_pred HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccc-ccCCCHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 98887 557 7899999999999999998887776553333333221 23447889999999999999999999999999
Q ss_pred HHHHHhcCCchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 012464 257 MLIMCGLLSDPQASVSAMGILIQTTGLLYVFPNSLNQGLSTLVGQALGAEQPGRAQRTTIMGIIVAFVGGLLASAFAFAV 336 (463)
Q Consensus 257 ~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (463)
++.+++.++ ++++++|+++.++.++...+..+++++..|.+++++++||.++.++..+++.+..+.++++.+.++.++
T Consensus 239 ~~~i~~~~g--~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 316 (342)
T TIGR00797 239 LALLVARLG--SIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILF 316 (342)
T ss_pred HHHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999876 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccCCChHHHHHHHHHHHHHH
Q 012464 337 RDAWGKLYTSESAVLALTKAALPIL 361 (463)
Q Consensus 337 ~~~i~~l~~~~~~~~~~~~~~l~i~ 361 (463)
++++.++|++||++.+.+..++++.
T Consensus 317 ~~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 317 REFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 9999999999999999998888764
No 10
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=1.6e-38 Score=301.89 Aligned_cols=448 Identities=34% Similarity=0.557 Sum_probs=424.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhHHHhHHHHHHHHHHHHHHHHHhhHHHHHhhhhCCCChhh
Q 012464 8 AEELNSLRKIACPVAITGLLFQFKSIISMLFLGHLGDIELAGGSLSLGIANITGYSVLKGLAMGMEPICSQAYGAKKGTI 87 (463)
Q Consensus 8 ~~~~k~i~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 87 (463)
.++.|++++++.|.....+.+...+.++..++||+|+.++++.+++....+.....+..|+..+..+.++|++|.++++.
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~ 103 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTA 103 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccch
Confidence 67889999999999999999999999999999999999999999999999998899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCchHHHHHH
Q 012464 88 LSQACRRTLSILIVIIFPISILWVNIEHILLSLGQEQAIISVAKVYIIYSIPELIAQALLNPLRIFLRTQNINKPLTIAA 167 (463)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 167 (463)
...+.+++..+....+++....+.+.+++...+++|+++...+..|.++..+..+........+.++|++++..+..+..
T Consensus 104 lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~~ 183 (473)
T KOG1347|consen 104 LGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVIG 183 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHHHHHHHHHHHHhcccCCCcCCCCCchhhhhhHHHHHHHHhhhHHHH
Q 012464 168 SFALIFHIAINIILAMVLNLGVRGVALAAASHTFIVILGLLVYLIFSRTALKPWDWQAVDSCNQGWWSLLSLMLPSLLSI 247 (463)
Q Consensus 168 ~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 247 (463)
.....+++.+++++++..++|..|++++..+++.........|..... ....|..+.. +.+.++++++.++|..++.
T Consensus 184 ~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~-~~~~w~~~s~--~~~~~~~~~~lai~s~~mi 260 (473)
T KOG1347|consen 184 LVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSG-CLAAWSGFSG--EFDSWGPFFALAIPSAVMI 260 (473)
T ss_pred HHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecC-chhhhhhhhH--hhhhHHHHHHHhhcchhee
Confidence 999999999999999999999999999999999999999988886544 4556665544 3889999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHH
Q 012464 248 CLEWWWYEIMLIMCGLLSDPQASVSAMGILIQTTGLLYVFPNSLNQGLSTLVGQALGAEQPGRAQRTTIMGIIVAFVGGL 327 (463)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 327 (463)
-+++..+.......|.++++..++++.++..++....+++..+++.+...++++.+|+++++++|.....+...++..+.
T Consensus 261 clE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g~ 340 (473)
T KOG1347|consen 261 CLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIGA 340 (473)
T ss_pred HHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999977899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHH
Q 012464 328 LASAFAFAVRDAWGKLYTSESAVLALTKAALPILGLCELGNCPQTAACGILLGSARPKLGVCINFCAFYIIGLPVAALMA 407 (463)
Q Consensus 328 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~i~~~~~l~ 407 (463)
..+..+....+.+..+|++|+|+.+...+..++++.+.++++.+.+..+..++.|+++...++++.+.+++++|....+.
T Consensus 341 ~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~l~ 420 (473)
T KOG1347|consen 341 SLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLYLG 420 (473)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEEEeeeeeeEecCcceeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccchhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHcccchhh
Q 012464 408 FELKIGFLGLWYGLAAAQASCVVMMIITLFCTDWKLQAQRAKELTQSSEEE 458 (463)
Q Consensus 408 ~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (463)
+..++|..|.|.++..+..+..........+.+|+++..+.+++....+.+
T Consensus 421 ~~~~~g~~glw~G~~~~~~~~~~~l~~~~~~tdW~~~~~~a~~~~~~~~~~ 471 (473)
T KOG1347|consen 421 FFTKFGVKGLWIGILLGFSVQTLVLAIVTARTDWKNQAEKAFARIIASLVL 471 (473)
T ss_pred EEEecCceEEEeehHHHHHHHHHHHHHheeeccHHHHHHHHHHHHHhhccC
Confidence 888899999999999998888888888888899999999988877655443
No 11
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=6.4e-36 Score=287.57 Aligned_cols=405 Identities=13% Similarity=0.026 Sum_probs=341.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHhHHHhHHHHHHHHHHHHHHHHHhhHHHHHhhhhCCCChhhHHHHH
Q 012464 14 LRKIACPVAITGLLFQFKSIISMLFLGH-LGDIELAGGSLSLGIANITGYSVLKGLAMGMEPICSQAYGAKKGTILSQAC 92 (463)
Q Consensus 14 i~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~ 92 (463)
+.|.+.....+++...+.+++...+++| +|++++|.++...++...+......|++++..+.++|+ ++|+|+.++.+
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 6788889999999999999999999999 99999999999999888875666888989999999988 67889999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 012464 93 RRTLSILIVIIFPISIL-WVNIEHILLSLGQEQAIISVAKVYIIYSIPELIAQALLNPLRIFLRTQNINKPLTIAASFAL 171 (463)
Q Consensus 93 ~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 171 (463)
++++.+....+++.++. ..+.+|+...+..+++. . .+..+..+..+...+.....+.+|+.+|++.++...+.+.
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 156 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY-Q---GVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS 156 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998854 78888988877766652 2 3556666666667778889999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCcccchHHHHHHHHHHHHHHHHHHHHHhcccCCCcCCCCCchhhhhhHHHHHHHHhhhHHHHHHHH
Q 012464 172 IFHIAINIILAMVLNLGVRGVALAAASHTFIVILGLLVYLIFSRTALKPWDWQAVDSCNQGWWSLLSLMLPSLLSICLEW 251 (463)
Q Consensus 172 ~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 251 (463)
++|+.+ .++... ..|+.|+++++.+++.+..+....+++++++ .+.++.+++++++..|+++++|.|..+++....
T Consensus 157 ~~~i~l-~i~~~~-~~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~k~ll~~g~p~~~~~~~~~ 232 (416)
T PRK15099 157 LIGVAA-YYLCYR-LGGYEGALLGLALVPALVVLPAGIMLIRRGT--IPLSYLKPSWDNGLAGQLGKFTLMALITSVTLP 232 (416)
T ss_pred HHHHHH-HHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHccc--eehHhhhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887 444433 2499999999999999988777766654433 222222334578889999999999999999999
Q ss_pred HHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHHH
Q 012464 252 WWYEIMLIMCGLLSDPQASVSAMGILIQTTGLL-YVFPNSLNQGLSTLVGQALGAEQPGRAQRTTIMGIIVAFVGGLLAS 330 (463)
Q Consensus 252 ~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~-~~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (463)
+....++.++++.. |++++|.|+.+.|+.+.+ ..+..+++++..|.+++. +|.++.++..++..+....+.++.+
T Consensus 233 i~~~~~~~~l~~~~-g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (416)
T PRK15099 233 VAYVMMRNLLAAHY-SWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDITREIVKALKFVLPAVAAAS 308 (416)
T ss_pred HHHHHHHHHHHhcC-CHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999997443 389999999999998855 788899999999999995 6789999999999999999999999
Q ss_pred HHHHHhhhhhhccCCChHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHh
Q 012464 331 AFAFAVRDAWGKLYTSESAVLALTKAALPILGLCELGNCPQTAACGILLGSARPKLGVCINFCAFYIIGLPVAALMAFEL 410 (463)
Q Consensus 331 ~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~i~~~~~l~~~~ 410 (463)
+.+.++++++++++.+|+ ++++.+++++++++.++...+......+.+.++++......+... ++++++++++...
T Consensus 309 ~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~l~i~l~~~li~~- 384 (416)
T PRK15099 309 FTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQF-TLLTGFAHWLIPL- 384 (416)
T ss_pred HHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-
Confidence 999999999999999876 667888999999999998888877777778888887777776655 7889999988776
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHH
Q 012464 411 KIGFLGLWYGLAAAQASCVVMMIITLF 437 (463)
Q Consensus 411 ~~g~~g~~~a~~~~~~~~~~~~~~~~~ 437 (463)
+|..|+++++.+++.+..++......
T Consensus 385 -~G~~G~a~a~~is~~~~~~~~~~~~~ 410 (416)
T PRK15099 385 -HGALGAAQAYMATYIVYFSLCCGVFL 410 (416)
T ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999887765554
No 12
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=100.00 E-value=1.5e-30 Score=250.14 Aligned_cols=386 Identities=16% Similarity=0.110 Sum_probs=335.7
Q ss_pred cChhh-HhHHHhHHHHHHHHHHHHH-HHHHhhHHHHHhhhhCCCChhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 012464 42 LGDIE-LAGGSLSLGIANITGYSVL-KGLAMGMEPICSQAYGAKKGTILSQACRRTLSILIVIIFPISIL-WVNIEHILL 118 (463)
Q Consensus 42 lg~~~-~~~~~~~~~i~~~~~~~~~-~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ 118 (463)
+|.++ ..++..+..+..++...+. .+++++..|..++.. ++++|+.++..++...+..+.++.++++ ..+++++++
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~ 83 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR 83 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67764 4578899999988833443 468999999999998 8899999999999998888888888755 888888888
Q ss_pred Hc--CCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHhhCcc---cchHH
Q 012464 119 SL--GQEQAIISVAKVYIIYSIPELIAQALLNPLRIFLRTQNINKPLTIAASFALIFHIAINIILAMVLNLG---VRGVA 193 (463)
Q Consensus 119 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g---~~g~a 193 (463)
.+ +.|++..+.+.+..++..+..++..+..++.+++|+++|+..+....+..++..+...+++.. ..| +.+.+
T Consensus 84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~--~~~~~~i~~la 161 (451)
T PF03023_consen 84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSN--SWGQENIYALA 161 (451)
T ss_pred HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHH--hcCchHHHHHH
Confidence 76 457888999999999999999999999999999999999999999998888776665444433 356 88999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCcCCCCCchhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCchhhHHHH
Q 012464 194 LAAASHTFIVILGLLVYLIFSRTALKPWDWQAVDSCNQGWWSLLSLMLPSLLSICLEWWWYEIMLIMCGLLSDPQASVSA 273 (463)
Q Consensus 194 ~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~ 273 (463)
+|..++..+..++.....++.+.+ .+ .+++.+.+..|++++...|..+++...++...+++.+.+.++ +.++++
T Consensus 162 ~g~~~g~~~~~l~~l~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~--~G~vs~ 235 (451)
T PF03023_consen 162 WGVLIGAIIQFLIQLPYLRRFGFR-FR---PKFDWRDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLG--EGSVSA 235 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCc-cc---ccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--ccHHHH
Confidence 999999999998888777544432 11 112225667999999999999999999999999999999987 889999
Q ss_pred HHHHHHHHHHHHHhH-HHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC----ChH
Q 012464 274 MGILIQTTGLLYVFP-NSLNQGLSTLVGQALGAEQPGRAQRTTIMGIIVAFVGGLLASAFAFAVRDAWGKLYT----SES 348 (463)
Q Consensus 274 ~~~~~~i~~~~~~~~-~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~----~~~ 348 (463)
++.+.++.+++..+. .+++++..|.+++...+||.++.++..+++++....+.+|.++++..+++++++++. -|+
T Consensus 236 l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~ 315 (451)
T PF03023_consen 236 LNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTA 315 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCH
Confidence 999999999998655 799999999999999999999999999999999999999999999999999999885 256
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Q 012464 349 AVLALTKAALPILGLCELGNCPQTAACGILLGSARPKLGVCINFCAFYIIGLPVAALMAFELKIGFLGLWYGLAAAQASC 428 (463)
Q Consensus 349 ~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~ 428 (463)
|..+.....+++++++.++.+++..+...+++.||+|.+...++.+. ++++.+++.+... +|..|+++++.++..+.
T Consensus 316 ~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~~-~lni~l~~~l~~~--~g~~Glala~sl~~~i~ 392 (451)
T PF03023_consen 316 EDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVISV-VLNIILSILLVPF--FGVAGLALATSLSAIIS 392 (451)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHHH-HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 66888999999999999999999999999999999999999999987 7888888777666 89999999999999999
Q ss_pred HHHHHHHHHhc
Q 012464 429 VVMMIITLFCT 439 (463)
Q Consensus 429 ~~~~~~~~~~~ 439 (463)
.++....++|+
T Consensus 393 ~~~l~~~l~r~ 403 (451)
T PF03023_consen 393 ALLLYILLRRR 403 (451)
T ss_pred HHHHHHHHHHH
Confidence 99888888775
No 13
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=100.00 E-value=7.6e-29 Score=233.64 Aligned_cols=422 Identities=15% Similarity=0.117 Sum_probs=352.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhh-HhHHHhHHHHHHHHHHHH-HHHHHhhHHHHHhhhhCCCCh
Q 012464 9 EELNSLRKIACPVAITGLLFQFKSIISMLFLGH-LGDIE-LAGGSLSLGIANITGYSV-LKGLAMGMEPICSQAYGAKKG 85 (463)
Q Consensus 9 ~~~k~i~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~~~-~~~~~~~~~i~~~~~~~~-~~gl~~~~~~~~s~~~g~~~~ 85 (463)
+..+++.|.++-....++++.+.+++-..+++. +|.+. -.++.++..+.+.+--.+ ...++++..|...++..++++
T Consensus 4 ~~~~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~ 83 (518)
T COG0728 4 KSKMSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGE 83 (518)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchh
Confidence 345678888888899999999999999999999 99964 457899999999974443 344789999999999887767
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHc-CC--ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCch
Q 012464 86 TILSQACRRTLSILIVIIFPISIL-WVNIEHILLSL-GQ--EQAIISVAKVYIIYSIPELIAQALLNPLRIFLRTQNINK 161 (463)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 161 (463)
|+.++..+........+.+.+++. ..+.+.++... +. |++....+....+++.|..++.++.....+.+++.+|+.
T Consensus 84 ~~~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~ 163 (518)
T COG0728 84 EAARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFF 163 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeec
Confidence 777766666665666666666655 56666666343 32 334444678888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHHHHHHHHHHHHhcccCCCcCCCCCchhhhhhHHHHHHHHh
Q 012464 162 PLTIAASFALIFHIAINIILAMVLNLGVRGVALAAASHTFIVILGLLVYLIFSRTALKPWDWQAVDSCNQGWWSLLSLML 241 (463)
Q Consensus 162 ~~~~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (463)
.+.+..+..++.-+...+.+....+....+.++++.++.+.+.++.+..+++.+...++. +.++.+..|++.+...
T Consensus 164 ~~a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~----~~~~~~~lk~~~~~~~ 239 (518)
T COG0728 164 IPAFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPR----FGFKDPGLKRFLKLML 239 (518)
T ss_pred hhhhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCC----CCCCchhHHHHHHHHH
Confidence 999999998888875555554443223678899999999999999998887655332221 2225579999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHH
Q 012464 242 PSLLSICLEWWWYEIMLIMCGLLSDPQASVSAMGILIQTTGLLYV-FPNSLNQGLSTLVGQALGAEQPGRAQRTTIMGII 320 (463)
Q Consensus 242 p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~-~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~ 320 (463)
|..++....++...+|+.+.+.+. +.+++.++.+.++.+++.. +..+++++..|.++++..++|.++.++..+++++
T Consensus 240 p~~l~~sisQi~lli~~~iAS~l~--~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~ 317 (518)
T COG0728 240 PALLGVSISQINLLIDTAIASFLA--EGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLR 317 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Confidence 999999999999999999999997 8899999999999999985 4589999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhccCCC----hHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcCCCcchHHHHHHHHH
Q 012464 321 VAFVGGLLASAFAFAVRDAWGKLYTS----ESAVLALTKAALPILGLCELGNCPQTAACGILLGSARPKLGVCINFCAFY 396 (463)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 396 (463)
.++..++|.++++..+++++++++.. +++....+.+.+..++.+.++..+..+....+++.+|+|.|+++.+++.
T Consensus 318 l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~~- 396 (518)
T COG0728 318 LTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIISL- 396 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHHH-
Confidence 99999999999999999999998842 4566788999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 012464 397 IIGLPVAALMAFELKIGFLGLWYGLAAAQASCVVMMIITLFCT 439 (463)
Q Consensus 397 ~i~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 439 (463)
++++.+++.+... +|..|.+++..++..+...+.++.++|+
T Consensus 397 ~~n~~l~~~l~~~--~~~~giala~s~a~~~~~~ll~~~l~k~ 437 (518)
T COG0728 397 VVNILLNLLLIPP--LGHVGLALATSLAAWVNALLLYYLLRKR 437 (518)
T ss_pred HHHHHHHHHHHhh--ccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888666555 7899999999999888888877777765
No 14
>PRK10459 colanic acid exporter; Provisional
Probab=100.00 E-value=2.1e-29 Score=248.15 Aligned_cols=399 Identities=11% Similarity=0.024 Sum_probs=321.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHhHHHhHHHHHHHHHHHHHHHHHhhHHHHHhhhhCCCChhhH
Q 012464 10 ELNSLRKIACPVAITGLLFQFKSIISMLFLGH-LGDIELAGGSLSLGIANITGYSVLKGLAMGMEPICSQAYGAKKGTIL 88 (463)
Q Consensus 10 ~~k~i~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~ 88 (463)
..|+..+.+.+..++++...+.+++..++++| +|||++|.++.+..+.++.......|++++..+ . +|. .
T Consensus 3 ~~~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii~----~---~~~--~ 73 (492)
T PRK10459 3 LREKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASIIQ----R---QDI--S 73 (492)
T ss_pred hHHHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHHh----c---ccC--C
Confidence 35778899999999999999999999999999 999999999999999999866777787776532 2 111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCchHHHHHH
Q 012464 89 SQACRRTLSILIVIIFPISIL-WVNIEHILLSLGQEQAIISVAKVYIIYSIPELIAQALLNPLRIFLRTQNINKPLTIAA 167 (463)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 167 (463)
++..++.+......+++..++ ..+.+++...++ +++. ...+++..+..++..+.......++..++++.....+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~ 148 (492)
T PRK10459 74 HLQLSTLYWLNVGLGIVVFVLVFLLSPLIADFYH-NPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIE 148 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Chhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHH
Confidence 233455666666667666644 444555444443 4433 3356777777888888888999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHHHHHHHHHHHHhcccCCCcCCCCCchhhhhhHHHHHHHHhhhHHHH
Q 012464 168 SFALIFHIAINIILAMVLNLGVRGVALAAASHTFIVILGLLVYLIFSRTALKPWDWQAVDSCNQGWWSLLSLMLPSLLSI 247 (463)
Q Consensus 168 ~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 247 (463)
....+....+...+... ++|+.+.+++..+++.+..+...... +++.+++ ++.+++..|++++++.|...++
T Consensus 149 ~~~~i~~~~~~i~~~~~-~~g~~~l~~~~~~~~~~~~l~~~~~~--~~~~~~~-----~~~~~~~~k~ll~~~~~~~~~~ 220 (492)
T PRK10459 149 ISAVVAGFTFAVVSAFF-WPGALAAILGYLVNSSVRTLLFGYFG--RKIYRPA-----LHFSLASVKPNLSFGAWQTAER 220 (492)
T ss_pred HHHHHHHHHHHHHHHHH-CCcHHHHHHHHHHHHHHHHHHHHHHh--cccCCcc-----ceecHHHHHHHHhhhHHHHHHH
Confidence 88888877776665554 78999999999999888776543322 1221111 1225678899999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHH
Q 012464 248 CLEWWWYEIMLIMCGLLSDPQASVSAMGILIQTTGLLYVFP-NSLNQGLSTLVGQALGAEQPGRAQRTTIMGIIVAFVGG 326 (463)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~-~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 326 (463)
+...+....|+.+++.+. |++++|.|+.+.++.+.+.... ..++++..|.+++. ++|.++.++.+++..+....++
T Consensus 221 ~~~~~~~~~d~~~lg~~l-g~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~ 297 (492)
T PRK10459 221 IINYLNTNIDTILIGRIL-GAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIIN 297 (492)
T ss_pred HHHHHHhcCchhhhhHhh-chHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987 4999999999999998876544 56788999999985 6788999999999999999999
Q ss_pred HHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHH
Q 012464 327 LLASAFAFAVRDAWGKLYTSESAVLALTKAALPILGLCELGNCPQTAACGILLGSARPKLGVCINFCAFYIIGLPVAALM 406 (463)
Q Consensus 327 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~i~~~~~l 406 (463)
+|+.+++..++++++.++.+++ ++.+.+.++++++..++..........+++.||+|.....+++.. ++.+|..+.+
T Consensus 298 ~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~~~i~~~~~~ 374 (492)
T PRK10459 298 FPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFKT-FLFIPAIVIG 374 (492)
T ss_pred HHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHH-HHHHHHHHHH
Confidence 9999999999999999998765 788999999999999999999999999999999999999998876 6777776666
Q ss_pred HHHhccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 012464 407 AFELKIGFLGLWYGLAAAQASCVVMMIITLFC 438 (463)
Q Consensus 407 ~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 438 (463)
... +|..|+++++.+++.+......+..+|
T Consensus 375 ~~~--~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 375 GQL--AGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred Hhh--ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544 799999999999999888877776644
No 15
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.97 E-value=1.7e-26 Score=226.89 Aligned_cols=390 Identities=17% Similarity=0.146 Sum_probs=310.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHhHHHhHHHHHHHHHHHHHHHHHhhHHHHHhhhhCCCChhh
Q 012464 9 EELNSLRKIACPVAITGLLFQFKSIISMLFLGH-LGDIELAGGSLSLGIANITGYSVLKGLAMGMEPICSQAYGAKKGTI 87 (463)
Q Consensus 9 ~~~k~i~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 87 (463)
+..+++.|.+.....+++.+.+.+++....++| +|+|++|.++.+.++.+++......|+..+..+.++++.++++++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~ 82 (480)
T COG2244 3 SLKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLL 82 (480)
T ss_pred hHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHH
Confidence 457889999999999999999999999999999 9999999999999999999777789999999999998876555555
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCchHHHHH
Q 012464 88 LSQA-CRRTLSILIVIIFPISILWVNIEHILLSLGQEQAIISVAKVYIIYSIPELIAQALLNPLRIFLRTQNINKPLTIA 166 (463)
Q Consensus 88 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 166 (463)
.... ...........+.+.........+. ++ .....++...+..+........++.+|+.++++.....
T Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (480)
T COG2244 83 LILLSVLLLLLLALILLLLLLLIAYLLAPI------DP----VLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALS 152 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc------Ch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Confidence 4444 4444444444444433322222222 12 22335677888899999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHHHHHHHHHHHHhcccCCCcCCCCCchhhhhhHHHHHHHHhhhHHH
Q 012464 167 ASFALIFHIAINIILAMVLNLGVRGVALAAASHTFIVILGLLVYLIFSRTALKPWDWQAVDSCNQGWWSLLSLMLPSLLS 246 (463)
Q Consensus 167 ~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 246 (463)
.+.+ ..-......+.. .......++...+..........+..++++. ..+.. .+..++..|++++++.|...+
T Consensus 153 ~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~l~~~~p~~~~ 225 (480)
T COG2244 153 IVSS-IFLLAAVFALLF---AALGLAVWALVLGAVVSLLVLLILLGKKKRG-LKRPI--LRFSLALLKELLRFGLPLLLS 225 (480)
T ss_pred HHHH-HHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh-ccccc--cCchhHHHHHHHHHhhHHHHH
Confidence 4444 111111112211 2345556666666666665555555322221 11111 121578999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHH
Q 012464 247 ICLEWWWYEIMLIMCGLLSDPQASVSAMGILIQTTGLLYVFPNSLNQGLSTLVGQALGAEQPGRAQRTTIMGIIVAFVGG 326 (463)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 326 (463)
+....+....|+.+++.+. |++++|.|+.+.++......+..+++.+..|.+++...++|.++.++..+++.++...++
T Consensus 226 ~~~~~l~~~~D~~~i~~~l-~~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (480)
T COG2244 226 SLLNFLFTNIDTLLLGLFL-GPAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLIS 304 (480)
T ss_pred HHHHHHHHHHHHHHHHHHh-hhhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998 599999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHH
Q 012464 327 LLASAFAFAVRDAWGKLYTSESAVLALTKAALPILGLCELGNCPQTAACGILLGSARPKLGVCINFCAFYIIGLPVAALM 406 (463)
Q Consensus 327 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~i~~~~~l 406 (463)
.|..+++..+++++..++.+++ +..+...++++++..++..........+++.|+++...+.+.++. ++++.+++.+
T Consensus 305 ~p~~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i~~~~l~~~l 381 (480)
T COG2244 305 IPALLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISA-LLNLILNLLL 381 (480)
T ss_pred HHHHHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHH-HHHHHHHhHH
Confidence 9999999999999999998766 555899999999999999999999999999999999999999987 7777777777
Q ss_pred HHHhccchhHHHHHH
Q 012464 407 AFELKIGFLGLWYGL 421 (463)
Q Consensus 407 ~~~~~~g~~g~~~a~ 421 (463)
... +|..|+..++
T Consensus 382 i~~--~g~~g~~~a~ 394 (480)
T COG2244 382 IPR--FGLIGAAIAT 394 (480)
T ss_pred HHh--hhhhhHHHHH
Confidence 665 7888888888
No 16
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.92 E-value=6.3e-23 Score=197.36 Aligned_cols=210 Identities=22% Similarity=0.263 Sum_probs=201.4
Q ss_pred hhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCh
Q 012464 229 CNQGWWSLLSLMLPSLLSICLEWWWYEIMLIMCGLLSDPQASVSAMGILIQTTGLLYVFPNSLNQGLSTLVGQALGAEQP 308 (463)
Q Consensus 229 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~ 308 (463)
.++..|+++++++|..++++.+.....+|+.++++++ ++++|+-+++.++..+...+..+++.+..+.++|.+|+||+
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~--~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~ 89 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLG--AEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDR 89 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCch
Confidence 4568899999999999999999999999999999998 99999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcCCCcchH
Q 012464 309 GRAQRTTIMGIIVAFVGGLLASAFAFAVRDAWGKLYTSESAVLALTKAALPILGLCELGNCPQTAACGILLGSARPKLGV 388 (463)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 388 (463)
+++++..+.++..++.++++..+....+++++..++.+++|+.+.+.+|+++..++.++..+.....+.+++.||+|.++
T Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m 169 (455)
T COG0534 90 KKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPM 169 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhH
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hc-cchhHHHHHHHHHHHHHHHHHHHHHHhccH
Q 012464 389 CINFCAFYIIGLPVAALMAFE-LK-IGFLGLWYGLAAAQASCVVMMIITLFCTDW 441 (463)
Q Consensus 389 ~~~~~~~~~i~i~~~~~l~~~-~~-~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~ 441 (463)
+.++++. ++|+.+++++.+. .+ +|+.|+++|+.+++.+..++...+++|++.
T Consensus 170 ~~~~~~~-~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~ 223 (455)
T COG0534 170 YILLLGN-LLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKR 223 (455)
T ss_pred HHHHHHH-HHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 9999998 8999999999988 46 899999999999999999999888887654
No 17
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.92 E-value=6.4e-23 Score=197.31 Aligned_cols=208 Identities=17% Similarity=0.180 Sum_probs=195.0
Q ss_pred hhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCh
Q 012464 229 CNQGWWSLLSLMLPSLLSICLEWWWYEIMLIMCGLLSDPQASVSAMGILIQTTGLLYVFPNSLNQGLSTLVGQALGAEQP 308 (463)
Q Consensus 229 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~ 308 (463)
-+++.|++++.++|..++++...+...+|+.++++++ |++++|+.+++.++.++...+..+++.+..+.++|++|+||+
T Consensus 4 ~~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~-g~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~ 82 (441)
T PRK10367 4 LTSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLD-SPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNP 82 (441)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 4677899999999999999999999999999999996 388999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcCCCcchH
Q 012464 309 GRAQRTTIMGIIVAFVGGLLASAFAFAVRDAWGKLYTSESAVLALTKAALPILGLCELGNCPQTAACGILLGSARPKLGV 388 (463)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 388 (463)
+++++..++++..+++.+++..+....+.+++.++++.|+|+.+.+.+|+++..++.++........+.+++.||+|.++
T Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~ 162 (441)
T PRK10367 83 QALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPV 162 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 99999999999999999999988888889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 012464 389 CINFCAFYIIGLPVAALMAFELKIGFLGLWYGLAAAQASCVVMMIITLFC 438 (463)
Q Consensus 389 ~~~~~~~~~i~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 438 (463)
+.++++. ++++++++++.+..++|+.|+++|+.+++.+..++...++++
T Consensus 163 ~~~ii~~-~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~ 211 (441)
T PRK10367 163 ILLVVGN-ILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRK 211 (441)
T ss_pred HHHHHHH-HHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999987 889999999988878999999999999999988776665554
No 18
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.91 E-value=1.5e-22 Score=196.51 Aligned_cols=207 Identities=16% Similarity=0.138 Sum_probs=190.3
Q ss_pred hhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCh
Q 012464 229 CNQGWWSLLSLMLPSLLSICLEWWWYEIMLIMCGLLSDPQASVSAMGILIQTTGLLYVFPNSLNQGLSTLVGQALGAEQP 308 (463)
Q Consensus 229 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~ 308 (463)
+++..|++++.++|..++++.+.+...+|+.++++++ ++++|+++++.++..+...+..+++++..|.++|++|+||+
T Consensus 5 ~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg--~~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~~ 82 (464)
T PRK00187 5 PTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLG--PEALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGDI 82 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 7788999999999999999999999999999999987 89999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcCCCcchH
Q 012464 309 GRAQRTTIMGIIVAFVGGLLASAFAFAVRDAWGKLYTSESAVLALTKAALPILGLCELGNCPQTAACGILLGSARPKLGV 388 (463)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 388 (463)
+++++..+.++.+.+.++++..++.. +.+++.++++.|+|+.+.+.+++++..++.++..+.....+.+++.||++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 161 (464)
T PRK00187 83 EGATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVM 161 (464)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 99999999999999999998877765 67899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----hccchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 012464 389 CINFCAFYIIGLPVAALMAFE----LKIGFLGLWYGLAAAQASCVVMMIITLFCT 439 (463)
Q Consensus 389 ~~~~~~~~~i~i~~~~~l~~~----~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 439 (463)
+.++++. ++++++++++.+. +++|+.|+++|+.+++....+....+++++
T Consensus 162 ~~~~~~~-~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~ 215 (464)
T PRK00187 162 VISLAGA-VANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRH 215 (464)
T ss_pred HHHHHHH-HHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999988 7899999987753 358999999999999887776655555543
No 19
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.91 E-value=3.7e-22 Score=193.85 Aligned_cols=207 Identities=16% Similarity=0.224 Sum_probs=192.2
Q ss_pred hhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCh
Q 012464 229 CNQGWWSLLSLMLPSLLSICLEWWWYEIMLIMCGLLSDPQASVSAMGILIQTTGLLYVFPNSLNQGLSTLVGQALGAEQP 308 (463)
Q Consensus 229 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~ 308 (463)
+-+..|++++.++|..++++...+...+|+.++++++ ++++|+++++.++..+...+..+++.+..+.++|++|+||+
T Consensus 24 ~~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG--~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~ 101 (478)
T PRK10189 24 RVLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLG--KEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDR 101 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 4556999999999999999999999999999999987 89999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCC--ChHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcCCCcc
Q 012464 309 GRAQRTTIMGIIVAFVGGLLASAFAFAVRDAWGKLYT--SESAVLALTKAALPILGLCELGNCPQTAACGILLGSARPKL 386 (463)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 386 (463)
+++++..+.++.+++.++++.+++.+.+++++..++. .|+|+.+.+.+++++..++.++..+.....+.+++.||++.
T Consensus 102 ~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~ 181 (478)
T PRK10189 102 RRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKI 181 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHH
Confidence 9999999999999999999999999999999999995 68999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH----hccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 012464 387 GVCINFCAFYIIGLPVAALMAFE----LKIGFLGLWYGLAAAQASCVVMMIITLFC 438 (463)
Q Consensus 387 ~~~~~~~~~~~i~i~~~~~l~~~----~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 438 (463)
++..++.+. ++++++.+.+.+. +++|+.|+|+|+.+++.+..++..+++.+
T Consensus 182 ~~~i~~~~~-~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~ 236 (478)
T PRK10189 182 PLLINGGMN-ILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMI 236 (478)
T ss_pred hHHHHHHHH-HHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999865 8899999888764 47899999999999999988776655543
No 20
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.90 E-value=2.8e-21 Score=188.43 Aligned_cols=209 Identities=18% Similarity=0.162 Sum_probs=194.5
Q ss_pred hhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCh
Q 012464 229 CNQGWWSLLSLMLPSLLSICLEWWWYEIMLIMCGLLSDPQASVSAMGILIQTTGLLYVFPNSLNQGLSTLVGQALGAEQP 308 (463)
Q Consensus 229 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~ 308 (463)
.++..|+++++++|..++++...+...+|+.++++++ ++++++++++.++......+..+++.+..|.+++++|+||.
T Consensus 7 ~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g--~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~~ 84 (456)
T PRK01766 7 YKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVS--ATDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGRR 84 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 6788999999999999999999999999999999987 88999999999998888888899999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcCCCcchH
Q 012464 309 GRAQRTTIMGIIVAFVGGLLASAFAFAVRDAWGKLYTSESAVLALTKAALPILGLCELGNCPQTAACGILLGSARPKLGV 388 (463)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 388 (463)
++.++..+.++.+++.++++.+++++.+++++..+++.|+|+.+.+..++++..++.++..+.....+.+++.||++.++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 164 (456)
T PRK01766 85 ERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTM 164 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----hccchhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 012464 389 CINFCAFYIIGLPVAALMAFE----LKIGFLGLWYGLAAAQASCVVMMIITLFCTD 440 (463)
Q Consensus 389 ~~~~~~~~~i~i~~~~~l~~~----~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~ 440 (463)
+.++++. ++++++++++.+. +++|+.|+++++.+++.+..++..++.+|++
T Consensus 165 ~~~~i~~-ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~ 219 (456)
T PRK01766 165 VIGFLGL-LINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRAR 219 (456)
T ss_pred HHHHHHH-HHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 9999987 7899999887752 4689999999999999999988877776543
No 21
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.90 E-value=1.7e-21 Score=189.02 Aligned_cols=209 Identities=16% Similarity=0.182 Sum_probs=196.3
Q ss_pred hhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCh
Q 012464 229 CNQGWWSLLSLMLPSLLSICLEWWWYEIMLIMCGLLSDPQASVSAMGILIQTTGLLYVFPNSLNQGLSTLVGQALGAEQP 308 (463)
Q Consensus 229 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~ 308 (463)
+++..|++++.++|..++++.+.+...+|+.+++++. |++++++++.+.++.++...+..+++.+..+.++|++|+||+
T Consensus 7 ~~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~-g~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~ 85 (453)
T PRK09575 7 NQSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYV-GAEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDL 85 (453)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCH
Confidence 5678899999999999999999999999999999974 289999999999999999999899999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcCCCcchH
Q 012464 309 GRAQRTTIMGIIVAFVGGLLASAFAFAVRDAWGKLYTSESAVLALTKAALPILGLCELGNCPQTAACGILLGSARPKLGV 388 (463)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 388 (463)
|++++..++++.+++.++++.+++...+++++..+++.|+|+.+.+.+++++..++.++..+.....+.+++.||++.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 165 (453)
T PRK09575 86 EKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLAT 165 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 012464 389 CINFCAFYIIGLPVAALMAFELKIGFLGLWYGLAAAQASCVVMMIITLFCT 439 (463)
Q Consensus 389 ~~~~~~~~~i~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 439 (463)
..++.+. ++++++++++...+++|+.|+++|+.+++.+..++..++++++
T Consensus 166 ~~~~~~~-~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~ 215 (453)
T PRK09575 166 GLMVIGA-LINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSS 215 (453)
T ss_pred HHHHHHH-HHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999887 8999999999888789999999999999999988877666543
No 22
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.84 E-value=2.1e-17 Score=150.20 Aligned_cols=271 Identities=16% Similarity=0.211 Sum_probs=210.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHhHHHhHHHHHHHHHHHHHHHHHhhHHHHHhhhhCCCChhhHHHHH
Q 012464 14 LRKIACPVAITGLLFQFKSIISMLFLGH-LGDIELAGGSLSLGIANITGYSVLKGLAMGMEPICSQAYGAKKGTILSQAC 92 (463)
Q Consensus 14 i~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~ 92 (463)
+.|.+.....+++...+.+++..++++| +|+|++|.++...++.+++......|++++..+..++...+ +++.+++.
T Consensus 1 l~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~ 78 (273)
T PF01943_consen 1 LLKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYF 78 (273)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHH
Confidence 3577888999999999999999999999 99999999999999999986667999999999999887432 44555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 012464 93 RRTLSILIVIIFPISILWVNIEHILLSLGQEQAIISVAKVYIIYSIPELIAQALLNPLRIFLRTQNINKPLTIAASFALI 172 (463)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 172 (463)
........+.+++......... .++.+ +... .+........+.........+++++.++.+.....++...+
T Consensus 79 ~~~~~~~~~~~~i~~~~~~~~~----~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (273)
T PF01943_consen 79 SSVLFLLLIFSLIFLLILLIAS----FFGNP-SLSL---ILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSL 150 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HcCCc-hHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555544444444333322211 33322 2211 12222222225677888899999999999999999999998
Q ss_pred HHHHHHHHHHHhhCcccchHHHHHHHHHHHHHHHHHHHHHhcccCCCcCCCCCchhhhhhHHHHHHHHhhhHHHHHHHHH
Q 012464 173 FHIAINIILAMVLNLGVRGVALAAASHTFIVILGLLVYLIFSRTALKPWDWQAVDSCNQGWWSLLSLMLPSLLSICLEWW 252 (463)
Q Consensus 173 ~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 252 (463)
....+...++.. +.+..+...+..++..+..++...+.+++.+ .+++ ..+++..|++++++.|..++++...+
T Consensus 151 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (273)
T PF01943_consen 151 LSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKLR--PRFS----FFSKKFFKEILRFGLPLFLSSLLSWL 223 (273)
T ss_pred HHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cccc----ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 888777666665 4458899999999999988888777754432 2211 12588999999999999999999999
Q ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 012464 253 WYEIMLIMCGLLSDPQASVSAMGILIQTTGLLYVFPNSLNQGLSTLVGQA 302 (463)
Q Consensus 253 ~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~ 302 (463)
....|+.+++.+. |++++|.|+++.++......+..++.++..|.+++.
T Consensus 224 ~~~~d~~ii~~~~-g~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 224 YSQIDRLIIGYFL-GPEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRL 272 (273)
T ss_pred HHHhHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999998 599999999999999999999999999999999985
No 23
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.81 E-value=6.6e-17 Score=160.15 Aligned_cols=204 Identities=14% Similarity=0.100 Sum_probs=183.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhHHHhHHHHHHHHHHHHHHHHHhhHHHHHhhhhCCCChhh
Q 012464 8 AEELNSLRKIACPVAITGLLFQFKSIISMLFLGHLGDIELAGGSLSLGIANITGYSVLKGLAMGMEPICSQAYGAKKGTI 87 (463)
Q Consensus 8 ~~~~k~i~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 87 (463)
++..|++++.+.|..++++...+...+|..+.+.+|++++++++.+.++..+....+..+++++..|.+||++|++|+++
T Consensus 219 ~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~ 298 (502)
T TIGR01695 219 DPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNE 298 (502)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 46789999999999999999999999999885559999999999999998886345678899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCC----ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCchH
Q 012464 88 LSQACRRTLSILIVIIFPISIL-WVNIEHILLSLGQ----EQAIISVAKVYIIYSIPELIAQALLNPLRIFLRTQNINKP 162 (463)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 162 (463)
.++..+.+......++.+.+++ ..++++++..+.. |+|....+..++++.++..++..+.......+++.||++.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~ 378 (502)
T TIGR01695 299 LRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRT 378 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCcc
Confidence 9999999999999999998855 7888999888755 5677888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHHHHHHHHHHHHh
Q 012464 163 LTIAASFALIFHIAINIILAMVLNLGVRGVALAAASHTFIVILGLLVYLIF 213 (463)
Q Consensus 163 ~~~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~ 213 (463)
+++.+....++|++++++++.. +|..|+++++.+++.+..++..++.++
T Consensus 379 ~~~~~~~~~~i~i~l~~~l~~~--~G~~G~~~a~~i~~~~~~~~~~~~~~~ 427 (502)
T TIGR01695 379 PFINSVISVVLNALLSLLLIFP--LGLVGIALATSAASMVSSVLLYLMLNR 427 (502)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988765 799999999999999998888766643
No 24
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.81 E-value=6.3e-18 Score=158.88 Aligned_cols=194 Identities=19% Similarity=0.214 Sum_probs=179.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHH
Q 012464 242 PSLLSICLEWWWYEIMLIMCGLLSDPQASVSAMGILIQTTGLLYVFPNSLNQGLSTLVGQALGAEQPGRAQRTTIMGIIV 321 (463)
Q Consensus 242 p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~ 321 (463)
|.+++++...+...+|+.++++++ ++++++|+.+.++..+...+..+++++..|.+++++|+||+|++++..++....
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 78 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLG--PVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLL 78 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 778899999999999999999987 899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcCCCcchHHHHHHHHHHHHHH
Q 012464 322 AFVGGLLASAFAFAVRDAWGKLYTSESAVLALTKAALPILGLCELGNCPQTAACGILLGSARPKLGVCINFCAFYIIGLP 401 (463)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~i~ 401 (463)
....+++.+++..++++++.++++.|++..+.+..+++++.++.++.++.....+.+++.||.+.+...++++. +++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~-~~~i~ 157 (342)
T TIGR00797 79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGN-VINII 157 (342)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH-HHHHH
Confidence 99999999999999999999999878888899999999999999999999999999999999999999999887 78888
Q ss_pred HHHHHHH-Hhc-cchhHHHHHHHHHHHHHHHHHHHHHHh
Q 012464 402 VAALMAF-ELK-IGFLGLWYGLAAAQASCVVMMIITLFC 438 (463)
Q Consensus 402 ~~~~l~~-~~~-~g~~g~~~a~~~~~~~~~~~~~~~~~~ 438 (463)
..+.+.. ..+ +|+.|+++++.+++++..++..++.+|
T Consensus 158 ~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 158 LNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK 196 (342)
T ss_pred HhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8887776 555 679999999999999988887766665
No 25
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.79 E-value=3.1e-19 Score=148.45 Aligned_cols=162 Identities=25% Similarity=0.377 Sum_probs=157.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHH
Q 012464 242 PSLLSICLEWWWYEIMLIMCGLLSDPQASVSAMGILIQTTGLLYVFPNSLNQGLSTLVGQALGAEQPGRAQRTTIMGIIV 321 (463)
Q Consensus 242 p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~ 321 (463)
|..++++.+.+.+.+++.++++++ ++++++++++.++.++...+..+++++..|.+++++|+||++++++..+++..+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g--~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLG--PEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCT--TCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence 788999999999999999999996 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcCCCcchHHHHHHHHHHHHHH
Q 012464 322 AFVGGLLASAFAFAVRDAWGKLYTSESAVLALTKAALPILGLCELGNCPQTAACGILLGSARPKLGVCINFCAFYIIGLP 401 (463)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~i~ 401 (463)
+..++++.+++...+++++..++++|+|+.+.+.+++++..++.++..+.....+++++.||++.+++.++++.|++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP 158 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 012464 402 VAAL 405 (463)
Q Consensus 402 ~~~~ 405 (463)
++|+
T Consensus 159 l~yl 162 (162)
T PF01554_consen 159 LAYL 162 (162)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9874
No 26
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.76 E-value=1.9e-15 Score=145.90 Aligned_cols=207 Identities=18% Similarity=0.173 Sum_probs=190.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhHHHhHHHHHHHHHHHHHHHHHhhHHHHHhhhhCCCChhh
Q 012464 8 AEELNSLRKIACPVAITGLLFQFKSIISMLFLGHLGDIELAGGSLSLGIANITGYSVLKGLAMGMEPICSQAYGAKKGTI 87 (463)
Q Consensus 8 ~~~~k~i~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~ 87 (463)
.+..|++++...|.+++....++..++|+.+.+++++.++++++.+..+.++....+..++++...|.+|+...++|.++
T Consensus 194 ~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~ 273 (451)
T PF03023_consen 194 DPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEE 273 (451)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHH
Confidence 45689999999999999999999999999999999999999999999999998678888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcC----CChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCchH
Q 012464 88 LSQACRRTLSILIVIIFPISIL-WVNIEHILLSLG----QEQAIISVAKVYIIYSIPELIAQALLNPLRIFLRTQNINKP 162 (463)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 162 (463)
.++.+++++.....+.++.++. ..+++|++..+. .|.|..+.....+++.+++.++..+...+...+.+.+|++.
T Consensus 274 ~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~ 353 (451)
T PF03023_consen 274 FRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKT 353 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHh
Confidence 9999999999999999999855 888999997764 36777888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHHHHHHHHHHHHhccc
Q 012464 163 LTIAASFALIFHIAINIILAMVLNLGVRGVALAAASHTFIVILGLLVYLIFSRT 216 (463)
Q Consensus 163 ~~~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~ 216 (463)
++..++.+.++|++++.++... +|..|.++++.++..+..+.....++|+.+
T Consensus 354 ~~~~~~~~~~lni~l~~~l~~~--~g~~Glala~sl~~~i~~~~l~~~l~r~~~ 405 (451)
T PF03023_consen 354 PVRISVISVVLNIILSILLVPF--FGVAGLALATSLSAIISALLLYILLRRRLG 405 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999888886 899999999999999999998887755443
No 27
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.75 E-value=1.9e-18 Score=143.67 Aligned_cols=160 Identities=24% Similarity=0.327 Sum_probs=153.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccChhhHhHHHhHHHHHHHHHHHHHHHHHhhHHHHHhhhhCCCChhhHHHHHHHHHHHH
Q 012464 20 PVAITGLLFQFKSIISMLFLGHLGDIELAGGSLSLGIANITGYSVLKGLAMGMEPICSQAYGAKKGTILSQACRRTLSIL 99 (463)
Q Consensus 20 p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 99 (463)
|.+++++...+...+|..+++++|++++++++++.++.++. ..+..|+++|..+.+||++|++|+++.++..+.++.+.
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~-~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~ 79 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSIL-FMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS 79 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-hhhcccccccccceeecccccccccccccccccccccc
Confidence 88999999999999999999999999999999999999998 88999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH-HHHHHH
Q 012464 100 IVIIFPISIL-WVNIEHILLSLGQEQAIISVAKVYIIYSIPELIAQALLNPLRIFLRTQNINKPLTIAASFAL-IFHIAI 177 (463)
Q Consensus 100 ~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~~ 177 (463)
.+++++..++ ..+.+++..+++.|+|..+.+.+|+++..++.++..+....++++++.||++.+++.++.+. ++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l 159 (162)
T PF01554_consen 80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL 159 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence 9999999966 88888999999999999999999999999999999999999999999999999999999999 999998
Q ss_pred HHH
Q 012464 178 NII 180 (463)
Q Consensus 178 ~~~ 180 (463)
+++
T Consensus 160 ~yl 162 (162)
T PF01554_consen 160 AYL 162 (162)
T ss_dssp HHH
T ss_pred HhC
Confidence 874
No 28
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.72 E-value=2.2e-15 Score=148.75 Aligned_cols=201 Identities=13% Similarity=0.141 Sum_probs=171.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChh---------hHhHH-HhHHHHHHHHHHHHHHHHHhhHHHHH
Q 012464 8 AEELNSLRKIACPVAITGLLFQFKSIISMLFLGH-LGDI---------ELAGG-SLSLGIANITGYSVLKGLAMGMEPIC 76 (463)
Q Consensus 8 ~~~~k~i~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~~---------~~~~~-~~~~~i~~~~~~~~~~gl~~~~~~~~ 76 (463)
++..|++++.++|.+++++...+...+|+.++++ ++++ .+|.+ +.+.++..+. .....+++.+..|..
T Consensus 221 ~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~-~~~~~~l~~~~~p~~ 299 (488)
T TIGR02900 221 KALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFP-AVITSSLSTALVPDI 299 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhH-HHHHHHHHHHHHHHH
Confidence 4578999999999999999999999999999998 5432 22222 3455666666 677889999999999
Q ss_pred hhhhCCCChhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 012464 77 SQAYGAKKGTILSQACRRTLSILIVIIFPISIL-WVNIEHILLSLGQEQAIISVAKVYIIYSIPELIAQALLNPLRIFLR 155 (463)
Q Consensus 77 s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 155 (463)
+|+.|++|+++.++..++...+...++.+.+++ ..+.++++..+..++ ++.+++++.++..++..+.....+.++
T Consensus 300 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~l~i~~~~~~~~~~~~~~~~~l~ 375 (488)
T TIGR02900 300 SEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRP----DAGNFIRVLAPSFPFLYFSAPLQSILQ 375 (488)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999988854 778888888876543 356789999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHHHHHHHHHHHHh
Q 012464 156 TQNINKPLTIAASFALIFHIAINIILAMVLNLGVRGVALAAASHTFIVILGLLVYLIF 213 (463)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~ 213 (463)
+.||++..++.++...++|++++++++...++|+.|+++++.+++.+..++..+..+|
T Consensus 376 ~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~ 433 (488)
T TIGR02900 376 GLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKK 433 (488)
T ss_pred hcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988873335899999999999999998888776643
No 29
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.71 E-value=1.8e-13 Score=130.05 Aligned_cols=231 Identities=18% Similarity=0.105 Sum_probs=199.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhHHHhHHHHHHHHHHHHHHHHHhhHHHHHhhhhCCCChhhH
Q 012464 9 EELNSLRKIACPVAITGLLFQFKSIISMLFLGHLGDIELAGGSLSLGIANITGYSVLKGLAMGMEPICSQAYGAKKGTIL 88 (463)
Q Consensus 9 ~~~k~i~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~ 88 (463)
+..|++.+...|..++..++++..++|+.+-+.+.+...+.+.++..+.++..-.+..++++...|.+||+..++|.++.
T Consensus 229 ~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~ 308 (518)
T COG0728 229 PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEF 308 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHH
Confidence 68899999999999999999999999999999999999999999999999987799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCC----ChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCchHH
Q 012464 89 SQACRRTLSILIVIIFPISIL-WVNIEHILLSLGQ----EQAIISVAKVYIIYSIPELIAQALLNPLRIFLRTQNINKPL 163 (463)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 163 (463)
++..+.++....++.+|.++. ..+++|++..+.. +++......+.++....+.++..+..++...+.+++|+|.|
T Consensus 309 ~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP 388 (518)
T COG0728 309 LKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTP 388 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcC
Confidence 999999999999999999965 8899999977532 56677778888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHHHHHHHHHHHHhcccCCCcCCCCCchhhhhhHHHHHHHHhhh
Q 012464 164 TIAASFALIFHIAINIILAMVLNLGVRGVALAAASHTFIVILGLLVYLIFSRTALKPWDWQAVDSCNQGWWSLLSLMLPS 243 (463)
Q Consensus 164 ~~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 243 (463)
+++.+++.++|+.++..+... +|..|.+.++.++.++++.+.++.++++...+. .+ .+...+ ..|..+-.
T Consensus 389 ~~i~ii~~~~n~~l~~~l~~~--~~~~giala~s~a~~~~~~ll~~~l~k~~~~~~-~~------~~~~~~-~~k~~l~~ 458 (518)
T COG0728 389 MKIAIISLVVNILLNLLLIPP--LGHVGLALATSLAAWVNALLLYYLLRKRLVYLP-GR------GWGLFL-ILKLLLAS 458 (518)
T ss_pred hHHHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-cc------hhhHHH-HHHHHHHH
Confidence 999999999999999777665 788889999999999999888877765544322 11 445444 55555544
Q ss_pred HHHHHH
Q 012464 244 LLSICL 249 (463)
Q Consensus 244 ~~~~~~ 249 (463)
.+....
T Consensus 459 ~i~~~~ 464 (518)
T COG0728 459 AIMAAA 464 (518)
T ss_pred HHHHHH
Confidence 444333
No 30
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.70 E-value=1.2e-13 Score=123.72 Aligned_cols=248 Identities=15% Similarity=0.176 Sum_probs=180.5
Q ss_pred HHHHHHHHHhhc-cChhhHhHHHhHHHHHHHHHHHHHHHHHhhHHHHHhhhhCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 012464 30 FKSIISMLFLGH-LGDIELAGGSLSLGIANITGYSVLKGLAMGMEPICSQAYGAKKGTILSQACRRTLSILIVIIFPISI 108 (463)
Q Consensus 30 l~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (463)
..+++..++++| +|+|++|.++....+..+.......|+.+...+ . .++|+++.++..+.......+.+.+..+
T Consensus 2 ~~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (251)
T PF13440_consen 2 GINFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR----S-AARDKQDIRSLLRFSLLVSLLLAVILAI 76 (251)
T ss_pred hHHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----h-hccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778889999 999999999999999988745556777666655 2 2356666677766666554444444333
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHhhCcc
Q 012464 109 LWVNIEHILLSLGQEQAIISVAKVYIIYSIPELIAQALLNPLRIFLRTQNINKPLTIAASFALIFHIAINIILAMVLNLG 188 (463)
Q Consensus 109 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g 188 (463)
+. ..+...+ .+++. ..++....+..+........++.+++++|.+.....+....+........+... +.+
T Consensus 77 ~~---~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 147 (251)
T PF13440_consen 77 LA---ILIAYFF-GDPEL----FWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYL-GLN 147 (251)
T ss_pred HH---HHHHHHh-CChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh
Confidence 21 1111222 33332 234556667778888888999999999999999999999998885554444443 347
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhcccCCCcCCCCCchhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCchh
Q 012464 189 VRGVALAAASHTFIVILGLLVYLIFSRTALKPWDWQAVDSCNQGWWSLLSLMLPSLLSICLEWWWYEIMLIMCGLLSDPQ 268 (463)
Q Consensus 189 ~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~ 268 (463)
..+..++..+++.+..++.....+ ++.+.+ + +++..| .++.+.|..+.++........|..+++.+. |+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l-~~ 216 (251)
T PF13440_consen 148 LWSILLAFIISALLALLISFYLLR--RKLRLS-F------KFSWRR-LLKYGLPFSLSSLLSWLLSQIDRLLIGYFL-GP 216 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--cccCCC-c------hhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CH
Confidence 888889988888888766654332 111111 1 233334 799999999999999999999999999955 39
Q ss_pred hHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHhh
Q 012464 269 ASVSAMGILIQTTGLLY-VFPNSLNQGLSTLVGQA 302 (463)
Q Consensus 269 ~~~a~~~~~~~i~~~~~-~~~~~l~~~~~p~~~~~ 302 (463)
+++|.|+++.++...+. .+..++++...|.++|.
T Consensus 217 ~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar~ 251 (251)
T PF13440_consen 217 EAVGIYSVAQRLASLPASLLSSAISSVFFPKLARM 251 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999888 88899999999999873
No 31
>PRK10459 colanic acid exporter; Provisional
Probab=99.67 E-value=5.7e-13 Score=131.52 Aligned_cols=199 Identities=16% Similarity=0.136 Sum_probs=169.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHhHHHhHHHHHHHHHHHHHHHHHhhHHHHHhhhhCCCChh
Q 012464 8 AEELNSLRKIACPVAITGLLFQFKSIISMLFLGH-LGDIELAGGSLSLGIANITGYSVLKGLAMGMEPICSQAYGAKKGT 86 (463)
Q Consensus 8 ~~~~k~i~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 86 (463)
++..|++++.+.|.+.+++...+...+|+.++++ +|++++|.|+.+.++..+....+...++....|..|+. ++|++
T Consensus 203 ~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~ 280 (492)
T PRK10459 203 LASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTE 280 (492)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHH
Confidence 4678999999999999999999999999999999 99999999999999988764555555677788888886 57888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCchHHHH
Q 012464 87 ILSQACRRTLSILIVIIFPISIL-WVNIEHILLSLGQEQAIISVAKVYIIYSIPELIAQALLNPLRIFLRTQNINKPLTI 165 (463)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 165 (463)
+.++.+++.......++++..++ ...+++++..+.+++ +..+...++++++...+..........+++.||.+....
T Consensus 281 ~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~ 358 (492)
T PRK10459 281 KLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFK 358 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHH
Confidence 89999999999999999998855 778888887765543 566788899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHHHHHHHHHHHH
Q 012464 166 AASFALIFHIAINIILAMVLNLGVRGVALAAASHTFIVILGLLVYLI 212 (463)
Q Consensus 166 ~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~ 212 (463)
.+++..+++++..+.+.. .+|+.|+++++.+++.+......++..
T Consensus 359 ~~~~~~~~~i~~~~~~~~--~~G~~g~a~a~~i~~~~~~~~~~~~~~ 403 (492)
T PRK10459 359 WNVFKTFLFIPAIVIGGQ--LAGLIGVALGFLLVQIINTILSYFLMI 403 (492)
T ss_pred HHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888888877666554 479999999999999998887776663
No 32
>PRK15099 O-antigen translocase; Provisional
Probab=99.63 E-value=1.7e-13 Score=132.19 Aligned_cols=199 Identities=10% Similarity=0.037 Sum_probs=169.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHhHHHhHHHHHHHHHHHHHHHHHhhHHHHHhhhhCCCCh
Q 012464 7 VAEELNSLRKIACPVAITGLLFQFKSIISMLFLGH-LGDIELAGGSLSLGIANITGYSVLKGLAMGMEPICSQAYGAKKG 85 (463)
Q Consensus 7 ~~~~~k~i~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~ 85 (463)
.++..|++++.+.|..++++...+....|+.++++ +|++++|.|+.+.++.......+..+++++..|.++++ +|+
T Consensus 210 ~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~ 286 (416)
T PRK15099 210 DNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEK 286 (416)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCh
Confidence 35678999999999999999999999999999986 99999999999999977544788999999999999996 567
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCchHHH
Q 012464 86 TILSQACRRTLSILIVIIFPISIL-WVNIEHILLSLGQEQAIISVAKVYIIYSIPELIAQALLNPLRIFLRTQNINKPLT 164 (463)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 164 (463)
++.++..++.......++.+..+. ..++++++.++..++ .+++.++.+++++...+...+......+.+.++.+...
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~ 364 (416)
T PRK15099 287 RDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYI 364 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888999998888888887754 688999998886643 33456788888888887777776666677888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHHHHHHHHHHHH
Q 012464 165 IAASFALIFHIAINIILAMVLNLGVRGVALAAASHTFIVILGLLVYLI 212 (463)
Q Consensus 165 ~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~ 212 (463)
...+...++++++++++++. +|..|+++++.+++.+..........
T Consensus 365 ~~~~~~~~l~i~l~~~li~~--~G~~G~a~a~~is~~~~~~~~~~~~~ 410 (416)
T PRK15099 365 LAEVSQFTLLTGFAHWLIPL--HGALGAAQAYMATYIVYFSLCCGVFL 410 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999998886 89999999999999999987775554
No 33
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.57 E-value=1.7e-12 Score=127.88 Aligned_cols=186 Identities=20% Similarity=0.248 Sum_probs=168.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHhHHHhHHHHHHHHHHHHHHHHHhhHHHHHhhhhCCCChh
Q 012464 8 AEELNSLRKIACPVAITGLLFQFKSIISMLFLGH-LGDIELAGGSLSLGIANITGYSVLKGLAMGMEPICSQAYGAKKGT 86 (463)
Q Consensus 8 ~~~~k~i~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 86 (463)
++..|++++.++|...+.+...+.+.+|+.++++ +|++++|.|+.+.++.... ..+...++....|.+++...++|.+
T Consensus 209 ~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~-~~~~~~l~~~l~P~~s~~~~~~~~~ 287 (480)
T COG2244 209 LALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLL-LIVASALNRVLFPALSRAYAEGDRK 287 (480)
T ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHH-HHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 6789999999999999999999999999999999 9999999999888888777 8889999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCchHHHH
Q 012464 87 ILSQACRRTLSILIVIIFPISIL-WVNIEHILLSLGQEQAIISVAKVYIIYSIPELIAQALLNPLRIFLRTQNINKPLTI 165 (463)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 165 (463)
+.++..+++.......+.+..++ ..+++|++..+..++.. .+...+++..+..++..+.......+++.|+.+....
T Consensus 288 ~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~--~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 365 (480)
T COG2244 288 ALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYA--SAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLL 365 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHH
Confidence 99999999999999999999865 77888888776554432 2566788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHH
Q 012464 166 AASFALIFHIAINIILAMVLNLGVRGVALAAASH 199 (463)
Q Consensus 166 ~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~ 199 (463)
.+.++.++|++++++++.. +|..|++.++ .+
T Consensus 366 ~~~~~~i~~~~l~~~li~~--~g~~g~~~a~-~~ 396 (480)
T COG2244 366 ISLISALLNLILNLLLIPR--FGLIGAAIAT-AS 396 (480)
T ss_pred HHHHHHHHHHHHHhHHHHh--hhhhhHHHHH-HH
Confidence 9999999999999999886 7899999998 44
No 34
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=99.47 E-value=3.5e-10 Score=110.07 Aligned_cols=421 Identities=11% Similarity=-0.016 Sum_probs=259.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHhHHHhHHHH-HHHHHHHHHHHHHhhHHHHHhhhhCCCChhhHHHHHH
Q 012464 16 KIACPVAITGLLFQFKSIISMLFLGH-LGDIELAGGSLSLGI-ANITGYSVLKGLAMGMEPICSQAYGAKKGTILSQACR 93 (463)
Q Consensus 16 ~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~~~~~~~~~~~~i-~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~ 93 (463)
+.+--+++.+++..+.+++-+.++-| ++|+.+|..++=..+ .+......-.++..+..+.-.+...++|.++..+..+
T Consensus 5 ~gas~li~lQl~sRllTFvlN~lllR~lsp~ilGi~nv~LeLl~sTILFlSRE~fR~A~lR~~~~~~~~~~~~~~~n~~w 84 (549)
T PF04506_consen 5 KGASFLILLQLLSRLLTFVLNQLLLRFLSPEILGIANVQLELLYSTILFLSREAFRRACLRQPSSSIDKSNWAQSINLLW 84 (549)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCcccHHHhhhccc
Confidence 45567788899999999998888888 999999987433222 2222245566777777665444322223333333333
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHH----HHHc-CCChH---HHHHHHHHHHHHhhHHH----HHHHHHHHHHHHHhcCC
Q 012464 94 RTLSILIVIIFPISILWV--NIEHI----LLSL-GQEQA---IISVAKVYIIYSIPELI----AQALLNPLRIFLRTQNI 159 (463)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~--~~~~l----~~~~-~~~~~---~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~ 159 (463)
.......+++.+.+.+.+ ...|. ..+. ...++ ..+.....+.+...+.. ...++...+..+.-..|
T Consensus 85 ls~~lq~vvn~~~~~I~l~~igi~~~~~~~~~~~~~~~~~~~~~p~~~~~v~l~~~s~~iELlsEP~~il~Q~~l~~~~R 164 (549)
T PF04506_consen 85 LSVPLQAVVNLICSYIWLAWIGIPLSILLSQYQYASISNAFVIEPYFEPSVFLYGLSAFIELLSEPLYILAQQMLFFKLR 164 (549)
T ss_pred ccCcchhheehhHHHHhHhhccccHHHHHHHHHhhcchhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhee
Confidence 333333333332221111 01110 1111 11111 11222222222222222 23344455666666667
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhh-Cccc------chHHHHHHHHHHHHHHHHHHHHH-hcccCCCcCCCCCchh---
Q 012464 160 NKPLTIAASFALIFHIAINIILAMVL-NLGV------RGVALAAASHTFIVILGLLVYLI-FSRTALKPWDWQAVDS--- 228 (463)
Q Consensus 160 ~~~~~~~~~~~~~~~i~~~~~li~~~-~~g~------~g~a~a~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--- 228 (463)
.+..........+++........... +++. .-+.++..+++....+....... ........++....+.
T Consensus 165 v~~E~~A~~~k~i~t~~~v~~~~~~~~~~~~~~~~~~~~~~l~Falgq~~ys~~l~~~y~~~~~~~~~~~s~~lp~i~~~ 244 (549)
T PF04506_consen 165 VKAESLAVFAKCIVTFALVVLAERSGYGFFYFLSGQEGLAILAFALGQLAYSITLFFCYYWMYFFPFKSFSDLLPKISSG 244 (549)
T ss_pred eEechHHHHHHHHHHHHHHHHHHhcccceeeeeccchhHHHHHHHHHHHHHHHHHHhhHHhhccCcccchhhcccccccc
Confidence 77666666666666665443332210 1111 12245556666665543332221 1111111111100110
Q ss_pred ---hhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhc--CCchhhHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHhh
Q 012464 229 ---CNQGWWSLLSLMLPSLLSICLEWWWYEIMLIMCGL--LSDPQASVSAMGILIQTTGLLY-VFPNSLNQGLSTLVGQA 302 (463)
Q Consensus 229 ---~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~a~~~~~~~i~~~~~-~~~~~l~~~~~p~~~~~ 302 (463)
....-++.++.....+..++.-.+..+.|..++.. +.+ .++-|.|+++++..+++. .+...+-.......++.
T Consensus 245 ~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t-~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~ 323 (549)
T PF04506_consen 245 NPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLT-FEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKL 323 (549)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCC-HHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 11134788999999999999999999999999999 775 899999999999988875 55588999998999988
Q ss_pred hcCCCh---------hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 012464 303 LGAEQP---------GRAQRTTIMGIIVAFVGGLLASAFAFAVRDAWGKLYTSESAVLALTKAALPILGLCELGNCPQTA 373 (463)
Q Consensus 303 ~g~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~ 373 (463)
..+++. ++..+.....++....+++.+..+-...++.+.+++.++.-....+...++.++...|+.+++.+
T Consensus 324 l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi 403 (549)
T PF04506_consen 324 LSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGI 403 (549)
T ss_pred hcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccH
Confidence 866543 34556667777777777777777667777778888766543333468899999999999999999
Q ss_pred HHHHhhhcCCCcchHHHHH---HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 012464 374 ACGILLGSARPKLGVCINF---CAFYIIGLPVAALMAFELKIGFLGLWYGLAAAQASCVVMMIITLFCT 439 (463)
Q Consensus 374 ~~~~l~~~g~~~~~~~~~~---~~~~~i~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 439 (463)
...+.++..+.+.....+- +.+ ++.+..++++... ++|..|..+|..+.+.++.+....+++|.
T Consensus 404 ~EaF~~s~a~~~~l~~~~~~m~~~S-~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 404 TEAFVFSVASESQLDRYNYWMVVFS-AIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHH-HHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988876655443 233 5566777777776 78999999999999999999988877663
No 35
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.34 E-value=4.2e-08 Score=89.38 Aligned_cols=419 Identities=14% Similarity=0.027 Sum_probs=234.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cChhhHhHHHhHHHHHHHH-HHHHHHHHHhhHHHHHhhhhCCCChh
Q 012464 9 EELNSLRKIACPVAITGLLFQFKSIISMLFLGH-LGDIELAGGSLSLGIANIT-GYSVLKGLAMGMEPICSQAYGAKKGT 86 (463)
Q Consensus 9 ~~~k~i~~~~~p~~~~~~~~~l~~~i~~~~i~~-lg~~~~~~~~~~~~i~~~~-~~~~~~gl~~~~~~~~s~~~g~~~~~ 86 (463)
+...+-.+.+...+..+++..+.+++-+.++-| ++++.+|..++-..+..-. ....-.++.-+..+.-++. +++.+
T Consensus 5 ~vL~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~sTiLFlsREair~A~l~~gs~~--~d~~t 82 (530)
T KOG2864|consen 5 SVLESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQSTILFLSREAIRLAELRIGSEP--ADTWT 82 (530)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHHHHHHhhHHHHHHHhccCCCCC--CccHH
Confidence 445566667777888888888888877766666 9999999886654443321 1222334444444333322 12233
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCchHHHH
Q 012464 87 ILSQACRRTLSILIVIIFPISILWVNIEHILLSLGQEQA-IISVAKVYIIYSIPELIAQALLNPLRIFLRTQNINKPLTI 165 (463)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 165 (463)
+..+..+.+.-+..+...+..-++. .+... .|+. ..+.-..-+.+...+.....+..-+.-..|...+.+.-..
T Consensus 83 e~~n~~wlS~~L~~~i~~~~i~~wl---~~~~s--~d~i~~~p~y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~~i 157 (530)
T KOG2864|consen 83 EFINLLWLSVPLQTAINVACIYFWL---GFLSS--SDEISYSPLYAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQLRAI 157 (530)
T ss_pred HHHHhhhhhhhHHHHHHHHHHHHHH---HHhhc--cchhhcCchHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 4444444444444444333332211 11110 0111 1111122233333444444444444444455555555555
Q ss_pred HHHHHHHHHHHHHHHHHHhh--CcccchHHHHHHHHHHHHHHHHHHHHHhccc-CC--Cc-------CCCCCchh-hhhh
Q 012464 166 AASFALIFHIAINIILAMVL--NLGVRGVALAAASHTFIVILGLLVYLIFSRT-AL--KP-------WDWQAVDS-CNQG 232 (463)
Q Consensus 166 ~~~~~~~~~i~~~~~li~~~--~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~-~~--~~-------~~~~~~~~-~~~~ 232 (463)
..-+...+.-++.+...... ..++..-|+|.......-.+...+++.+.+. .+ .+ .++....+ ....
T Consensus 158 ~e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~~ff 237 (530)
T KOG2864|consen 158 AEGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENERGIFF 237 (530)
T ss_pred HhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCCccccc
Confidence 55555544423332322221 2333333444443333333322222222222 10 00 01100010 0011
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcC--CchhhHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHhhhcCCChh
Q 012464 233 WWSLLSLMLPSLLSICLEWWWYEIMLIMCGLL--SDPQASVSAMGILIQTTGLLY-VFPNSLNQGLSTLVGQALGAEQPG 309 (463)
Q Consensus 233 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~--~~g~~~~a~~~~~~~i~~~~~-~~~~~l~~~~~p~~~~~~g~~~~~ 309 (463)
-++..+.........+.-.+....+..++... .+ -.+-|.|.++++.-++.. .+...+-......+++...++++|
T Consensus 238 d~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls-~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe 316 (530)
T KOG2864|consen 238 DNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLS-FGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQE 316 (530)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCC-cchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchh
Confidence 23444555555556666666677777777633 22 456689999998877775 566889999999999999888888
Q ss_pred hHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcCCCcc
Q 012464 310 RAQRTTIM---GIIVAFVGGLLASAFAFAVRDAWGKLYTSESAVLALTKAALPILGLCELGNCPQTAACGILLGSARPKL 386 (463)
Q Consensus 310 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 386 (463)
+.|+.... .++....+++....+-...++..+.+++++.-....+...+++++...++.+++.+..++..+.++.+.
T Consensus 317 ~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~q 396 (530)
T KOG2864|consen 317 NVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQ 396 (530)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHH
Confidence 77776544 444444455444444455566677777664322223567999999999999999999999999887765
Q ss_pred hHHHH---HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 012464 387 GVCIN---FCAFYIIGLPVAALMAFELKIGFLGLWYGLAAAQASCVVMMIITLFC 438 (463)
Q Consensus 387 ~~~~~---~~~~~~i~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 438 (463)
.-..+ ++.+ ++.+.+++++... +|..|...|..+.+.++.+....++++
T Consensus 397 i~~~n~~mlafS-viflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~ 448 (530)
T KOG2864|consen 397 IDKHNKFMLAFS-VIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRH 448 (530)
T ss_pred HHhcccchhHHH-HHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54433 3333 5667888888887 788999999999999988887666655
No 36
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.34 E-value=8.2e-11 Score=112.90 Aligned_cols=206 Identities=17% Similarity=0.122 Sum_probs=189.5
Q ss_pred hhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHhhhcCCCh
Q 012464 230 NQGWWSLLSLMLPSLLSICLEWWWYEIMLIMCGLLSDPQASVSAMGILIQTTGLL-YVFPNSLNQGLSTLVGQALGAEQP 308 (463)
Q Consensus 230 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~-~~~~~~l~~~~~p~~~~~~g~~~~ 308 (463)
+++.|++.+++.|..+....+.....++..++++++ +.++++.+.+.+..+.. +.+..++..+..|..+|.+|.+++
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG--~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~ 101 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLG--NLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF 101 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcccc--chHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccccc
Confidence 688899999999999999999999999999999998 67999999999887774 567789999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcCCCcchH
Q 012464 309 GRAQRTTIMGIIVAFVGGLLASAFAFAVRDAWGKLYTSESAVLALTKAALPILGLCELGNCPQTAACGILLGSARPKLGV 388 (463)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 388 (463)
+.......++........+|.+.... +.+++...+.+|+++...+..+.++..+..+.......+...+++.+++....
T Consensus 102 ~~lg~~lqrs~~~l~~~~~~~~~l~~-~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 102 TALGVYLQRSGIVLLVQGLPISLLIL-NSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHH-ccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 99999999999998888899876655 56899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhc
Q 012464 389 CINFCAFYIIGLPVAALMAFELKIGFLGLWYGLAAAQASCVVMMIITLFCT 439 (463)
Q Consensus 389 ~~~~~~~~~i~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 439 (463)
++...+. .+++++.+++....++|..|+.++..+++.........+....
T Consensus 181 ~~~~~~~-~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~ 230 (473)
T KOG1347|consen 181 VIGLVAL-VLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLS 230 (473)
T ss_pred HHHHHHH-HHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheec
Confidence 9999988 8999999999999999999999999999998888777666543
No 37
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=99.14 E-value=6e-07 Score=78.54 Aligned_cols=322 Identities=13% Similarity=0.033 Sum_probs=189.7
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-c-Ch-hhHhHHHhHHHHHHHHHHHHHHHHHhhHHHHHh
Q 012464 1 MCDLMQVAEELNSLRKIACPVAITGLLFQFKSIISMLFLGH-L-GD-IELAGGSLSLGIANITGYSVLKGLAMGMEPICS 77 (463)
Q Consensus 1 ~~~~~~~~~~~k~i~~~~~p~~~~~~~~~l~~~i~~~~i~~-l-g~-~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s 77 (463)
|+++.+ -..++.+.++-+|+.++.++..+...+-+.-++| . .+ |.+++|+++..+.-++ ......+-+....++
T Consensus 1 ~~~~~~-~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~-~sp~~~~~~igl~~V- 77 (345)
T PF07260_consen 1 MVKFPS-LTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFF-ASPLSMFHHIGLVFV- 77 (345)
T ss_pred CCCccc-cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH-hChhhhhHHHHHHHh-
Confidence 444443 3467889999999999999999999988888887 3 33 4589999999998776 666666555555444
Q ss_pred hhhCCCChhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-HH-HHcCCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 012464 78 QAYGAKKGTILSQACRRTLSILIVIIFPIS-ILWVNIEH-IL-LSLGQEQAIISVAKVYIIYSIPELIAQALLNPLRIFL 154 (463)
Q Consensus 78 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 154 (463)
++++++ ++........+.+.+.... +.+-.... ++ ..++.++++.+.++..+.++.+.-.+.++....++.+
T Consensus 78 ----~s~rsr-r~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGIL 152 (345)
T PF07260_consen 78 ----NSKRSR-RKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGIL 152 (345)
T ss_pred ----cchhhh-HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence 332222 2222222222222222222 22322233 23 4568899999999999999999999999999999998
Q ss_pred HhcCCchHHHHHHHHHHHHHHHHHHHHHHhhCccc-chHH---HHHHHHHHHHH-HHHHHHHHhcccCCCcCCCCCchhh
Q 012464 155 RTQNINKPLTIAASFALIFHIAINIILAMVLNLGV-RGVA---LAAASHTFIVI-LGLLVYLIFSRTALKPWDWQAVDSC 229 (463)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~-~g~a---~a~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (463)
.-.+++......++......+++..+++.. ++.. .... .+...+..+-+ .+++.|+ ++-+.+.+-....-+-+
T Consensus 153 ik~r~s~iV~~aSI~~v~~qvV~v~~ll~~-~l~~~~pllipil~~y~g~~vr~t~v~LGy~-~~i~~~~p~~~~~~~~~ 230 (345)
T PF07260_consen 153 IKHRHSWIVGSASIADVIAQVVLVAILLSM-HLEPQDPLLIPILALYAGIAVRFTIVCLGYY-QSIHDIIPQLSGLEKGD 230 (345)
T ss_pred hhccceeEeehHHHHHHHHHHHHHHHHHcc-ccCccccHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhccccCCcccCC
Confidence 877776666565555555555554455432 1111 1111 22222222222 1122222 11111111111111225
Q ss_pred hhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCch----hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcC
Q 012464 230 NQGWWSLLSLMLPSLLSICLEWWWYEIMLIMCGLLSDP----QASVSAMGILIQTTGLLYVFPNSLNQGLSTLVGQALGA 305 (463)
Q Consensus 230 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~g~ 305 (463)
....++++++.+|.+.....+..+-.+.+.++++-.+| +++++...+.++..-..+....- ..+..|-.-++--+
T Consensus 231 ~~tl~~~l~F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~ypvgh~~y~w~~~-~r~~~paf~~~~~~ 309 (345)
T PF07260_consen 231 SATLQRMLKFWWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATYPVGHMPYGWLTE-LRAVYPAFDKNNPQ 309 (345)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhccccCCCcCcchhHHh-HHhhCchhhccCcc
Confidence 67889999999999999999999999999999994333 36677766666655544443322 12344554333222
Q ss_pred CChhh-----HHHHHHHHHHHHHHHHHHHHHHH
Q 012464 306 EQPGR-----AQRTTIMGIIVAFVGGLLASAFA 333 (463)
Q Consensus 306 ~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 333 (463)
++..+ .+...++....++.+++..++.+
T Consensus 310 ~~~~~~~~~v~~~~~~kf~~~c~~~sl~~~f~~ 342 (345)
T PF07260_consen 310 NKLRNCGNPVTQSHISKFVVLCLLLSLALCFVM 342 (345)
T ss_pred cccccccCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22211 12256666666666666555444
No 38
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.55 E-value=1.9e-05 Score=64.03 Aligned_cols=79 Identities=24% Similarity=0.247 Sum_probs=71.9
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHHHHHHHHHHHHh
Q 012464 134 IIYSIPELIAQALLNPLRIFLRTQNINKPLTIAASFALIFHIAINIILAMVLNLGVRGVALAAASHTFIVILGLLVYLIF 213 (463)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~ 213 (463)
+++.+++.++..+....++.+++.||++......+++.++|+++++.+++. +|..|+++++.+++.....+..++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~~--~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIPR--FGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888899999999999999999999999999999999999999999875 899999999999999998888777754
Q ss_pred c
Q 012464 214 S 214 (463)
Q Consensus 214 ~ 214 (463)
+
T Consensus 80 ~ 80 (146)
T PF14667_consen 80 K 80 (146)
T ss_pred H
Confidence 4
No 39
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.35 E-value=8.9e-05 Score=67.02 Aligned_cols=187 Identities=13% Similarity=0.094 Sum_probs=116.6
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHhhhcCCChhhHHHHHH
Q 012464 238 SLMLPSLLSICLEWWWYEIMLIMCGLLSDPQASVSAMGILIQTTGLLYVFP-NSLNQGLSTLVGQALGAEQPGRAQRTTI 316 (463)
Q Consensus 238 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~-~~l~~~~~p~~~~~~g~~~~~~~~~~~~ 316 (463)
|-+......+....+...+...++.+.. |+++.|.|+....+.++...+. .|+.++..-..++...+ .+..++...
T Consensus 3 k~~~~~~~~~~~~~~~~~~~~~il~r~l-~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 3 KNSLWLFLSNILSALIGFITIPILARYL-GPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 4445556666666666666667777666 4999999999999999888774 78888888777776432 233333333
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcCCCcchHHHHHHHHH
Q 012464 317 MGIIVAFVGGLLASAFAFAVRDAWGKLYTSESAVLALTKAALPILGLCELGNCPQTAACGILLGSARPKLGVCINFCAFY 396 (463)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 396 (463)
..........+....... +...+.. ++.. ..+........++..........+++.++.+.....++...
T Consensus 80 ~~~~~~~~~~~i~~~~~~-----~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 149 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLILL-----IASFFGN-PSLS---LILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISS- 149 (273)
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHcCC-chHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 333332222222222222 2223333 3211 11222222222577788889999999999999988888876
Q ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 012464 397 IIGLPVAALMAFELKIGFLGLWYGLAAAQASCVVMMIITLFC 438 (463)
Q Consensus 397 ~i~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 438 (463)
+..+.....+.... .+..+...+..++..+..++.....+|
T Consensus 150 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (273)
T PF01943_consen 150 LLSLLLILLLLFLG-SSLWGFLLGLVISSLVSLIISLFYLRR 190 (273)
T ss_pred HHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45554444444432 358888899999988888777776665
No 40
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.29 E-value=0.00027 Score=69.54 Aligned_cols=203 Identities=12% Similarity=0.021 Sum_probs=154.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cChhhHhHHHhHHHHHHHHHHHHHHHHHhhHHHHHhhhhCCCCh--
Q 012464 11 LNSLRKIACPVAITGLLFQFKSIISMLFLGH---LGDIELAGGSLSLGIANITGYSVLKGLAMGMEPICSQAYGAKKG-- 85 (463)
Q Consensus 11 ~k~i~~~~~p~~~~~~~~~l~~~i~~~~i~~---lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~-- 85 (463)
.++..+.+.....+.+...+.+--|++++.. .+.++-|.|+++.++=++..=.+...+--..-...++...+++.
T Consensus 252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~ 331 (549)
T PF04506_consen 252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKK 331 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchh
Confidence 5789999999999999999999999999998 57789999999999888865666666666666677776554322
Q ss_pred -------hhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhc
Q 012464 86 -------TILSQACRRTLSILIVIIFPISI-LWVNIEHILLSLGQEQAIISVAKVYIIYSIPELIAQALLNPLRIFLRTQ 157 (463)
Q Consensus 86 -------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 157 (463)
++..+.+...+.+...+++++.. +...++.++..+++++-..+.+.+.++..+..+|+.+++.+..++.++.
T Consensus 332 ~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~ 411 (549)
T PF04506_consen 332 KQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSV 411 (549)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 34666677777777777777663 4666777777765443333445667889999999999999999999988
Q ss_pred CCchHHHHHH---HHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHHHHHHHHHHHHhc
Q 012464 158 NINKPLTIAA---SFALIFHIAINIILAMVLNLGVRGVALAAASHTFIVILGLLVYLIFS 214 (463)
Q Consensus 158 ~~~~~~~~~~---~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 214 (463)
...+.....+ .+..++-+..++++... ++|..|..+|+.+....-.+....+..+.
T Consensus 412 a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 412 ASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8766554444 44455666677777775 68999999999998888888887777543
No 41
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.14 E-value=0.0016 Score=57.67 Aligned_cols=160 Identities=12% Similarity=0.100 Sum_probs=110.7
Q ss_pred hhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCC
Q 012464 229 CNQGWWSLLSLMLPSLLSICLEWWWYEIMLIMCGLL-SDPQASVSAMGILIQTTGLLYVFPNSLNQGLSTLVGQALGAEQ 307 (463)
Q Consensus 229 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~ 307 (463)
......++.++-.|..+++....+.-++.+.-+++- -+..+.+|+|+++..+.-++..+...+.+.....+.. +
T Consensus 6 ~~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s-----~ 80 (345)
T PF07260_consen 6 SLTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNS-----K 80 (345)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcc-----h
Confidence 456788999999999999999999988888888763 3324569999999999999998888877776655532 2
Q ss_pred hhhHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhh-ccCCChHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcCCCc
Q 012464 308 PGRAQRTTIMGIIVAFVGGLL-ASAFAFAVRDAWG-KLYTSESAVLALTKAALPILGLCELGNCPQTAACGILLGSARPK 385 (463)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~-~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~ 385 (463)
.++. +........+....+. ..+..-.++..++ .++.-||++.+.+...+.++.+..+++++.....+++.=.+++.
T Consensus 81 rsrr-~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~ 159 (345)
T PF07260_consen 81 RSRR-KAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSW 159 (345)
T ss_pred hhhH-HHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccee
Confidence 2222 2222112222222111 1112222333333 56677899999999999999999999999999999988666666
Q ss_pred chHHHHHHH
Q 012464 386 LGVCINFCA 394 (463)
Q Consensus 386 ~~~~~~~~~ 394 (463)
.....++..
T Consensus 160 iV~~aSI~~ 168 (345)
T PF07260_consen 160 IVGSASIAD 168 (345)
T ss_pred EeehHHHHH
Confidence 665555544
No 42
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.09 E-value=2.5e-05 Score=63.30 Aligned_cols=79 Identities=15% Similarity=0.146 Sum_probs=72.2
Q ss_pred HHHHHHHHhhhhhHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHH
Q 012464 358 LPILGLCELGNCPQTAACGILLGSARPKLGVCINFCAFYIIGLPVAALMAFELKIGFLGLWYGLAAAQASCVVMMIITLF 437 (463)
Q Consensus 358 l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~ 437 (463)
+++++++.++.++.......+++.||+|...+.++.+. ++++++++.+.+. +|..|+++++.+++.....+..+..+
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~-~v~i~~~~~li~~--~G~~Gaa~a~~i~~~~~~~~~~~~~~ 78 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGA-IVNIILNYILIPR--FGIYGAAIATAISEIVSFILNLWYVR 78 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH-HHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999988 8999999888544 89999999999999999999888888
Q ss_pred hc
Q 012464 438 CT 439 (463)
Q Consensus 438 ~~ 439 (463)
|.
T Consensus 79 k~ 80 (146)
T PF14667_consen 79 KK 80 (146)
T ss_pred HH
Confidence 75
No 43
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=98.01 E-value=0.0018 Score=57.65 Aligned_cols=166 Identities=11% Similarity=0.167 Sum_probs=107.4
Q ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 012464 255 EIMLIMCGLLSDPQASVSAMGILIQTTGLLYVFP-NSLNQGLSTLVGQALGAEQPGRAQRTTIMGIIVAFVGGLLASAFA 333 (463)
Q Consensus 255 ~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~-~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (463)
.....++++.. |+++.|.|+....+..+...+. .|+.+... +. .++++++.++..+..........+...++.
T Consensus 5 f~~~~~lar~l-~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (251)
T PF13440_consen 5 FLFLILLARYL-GPEDFGIYALIFSIVSILSIVASLGLRQSLV----RS-AARDKQDIRSLLRFSLLVSLLLAVILAILA 78 (251)
T ss_pred HHHHHHHHHHC-CHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----Hh-hccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556665 3999999999999988887764 44444432 22 335666777776666655555554444333
Q ss_pred HHhhhhhhccCCChHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHhccc
Q 012464 334 FAVRDAWGKLYTSESAVLALTKAALPILGLCELGNCPQTAACGILLGSARPKLGVCINFCAFYIIGLPVAALMAFELKIG 413 (463)
Q Consensus 334 ~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~i~~~~~l~~~~~~g 413 (463)
..... .+ ++++ ...++....+..++........+.+++.+|.+.......... +..+.....+... +.+
T Consensus 79 ~~~~~----~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~ 147 (251)
T PF13440_consen 79 ILIAY----FF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRS-LLRLLLLVLLLYL-GLN 147 (251)
T ss_pred HHHHH----Hh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH-HHHHHHHHHHHHH-Hhh
Confidence 32222 33 3332 334556677777888889999999999999999999888876 4443333333332 237
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 012464 414 FLGLWYGLAAAQASCVVMMIITLF 437 (463)
Q Consensus 414 ~~g~~~a~~~~~~~~~~~~~~~~~ 437 (463)
..+..++..++..+..+......+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~ 171 (251)
T PF13440_consen 148 LWSILLAFIISALLALLISFYLLR 171 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 888888888888877766555433
No 44
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.63 E-value=0.039 Score=51.49 Aligned_cols=201 Identities=11% Similarity=0.027 Sum_probs=137.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cChhhHhHHHhHHHHHHHHHHHHHHHHHhhHHHHHhhhhCCCChh
Q 012464 10 ELNSLRKIACPVAITGLLFQFKSIISMLFLGH---LGDIELAGGSLSLGIANITGYSVLKGLAMGMEPICSQAYGAKKGT 86 (463)
Q Consensus 10 ~~k~i~~~~~p~~~~~~~~~l~~~i~~~~i~~---lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 86 (463)
..++..+......-+.+...+.+-=|.+++.- ++-++-|.|.+++++=++..=.+...+--..-.+.+|...+++.|
T Consensus 237 fd~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe 316 (530)
T KOG2864|consen 237 FDNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQE 316 (530)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchh
Confidence 34677888888888889999999989999883 565677777777666665544455555555566666655555544
Q ss_pred ---hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCchH
Q 012464 87 ---ILSQACRRTLSILIVIIFPIS-ILWVNIEHILLSLGQEQAIISVAKVYIIYSIPELIAQALLNPLRIFLRTQNINKP 162 (463)
Q Consensus 87 ---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 162 (463)
++.+++...+.....+++..+ ++...+++.+.+.++++-........+++.+..+|+.++..+..++..+....+.
T Consensus 317 ~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~q 396 (530)
T KOG2864|consen 317 NVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQ 396 (530)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHH
Confidence 444555566666666665555 3455666777777665444444556789999999999999999999998876554
Q ss_pred HH---HHHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHHHHHHHHHHHH
Q 012464 163 LT---IAASFALIFHIAINIILAMVLNLGVRGVALAAASHTFIVILGLLVYLI 212 (463)
Q Consensus 163 ~~---~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~ 212 (463)
.- +...+..+.-.+.+++++-. +|..|.-+|+++...+--+..+.+.+
T Consensus 397 i~~~n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~ 447 (530)
T KOG2864|consen 397 IDKHNKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIR 447 (530)
T ss_pred HHhcccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 44455667777888888876 56677777777766666555555553
No 45
>COG4267 Predicted membrane protein [Function unknown]
Probab=97.21 E-value=0.17 Score=46.26 Aligned_cols=320 Identities=13% Similarity=0.034 Sum_probs=168.0
Q ss_pred HHHHHHHHHHHHhhHHHHHhhhhCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Q 012464 58 NITGYSVLKGLAMGMEPICSQAYGAKKGTILSQACRRTLSILIVIIFPISILWVNIEHILLSLGQEQAIISVAKVYIIYS 137 (463)
Q Consensus 58 ~~~~~~~~~gl~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 137 (463)
.++...+..|++...++++|...=++|.+++..-+--...+....+.++.. ++.....|...... ...
T Consensus 70 ~ifS~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~-------~vf~~~~~~si~yk-----~l~ 137 (467)
T COG4267 70 FIFSQIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGL-------IVFFVNNQYSIVYK-----ILA 137 (467)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH-------HhhhhcCchhHHHH-----HHH
Confidence 334456677788888888888877666666655444444433333333331 11111222222211 122
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHHHHHHHHHHHHhcccC
Q 012464 138 IPELIAQALLNPLRIFLRTQNINKPLTIAASFALIFHIAINIILAMVLNLGVRGVALAAASHTFIVILGLLVYLIFSRTA 217 (463)
Q Consensus 138 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~ 217 (463)
.......+..-..-.++.+.++.+.....-.++.++...+...+-. .+..|..++..++..+.......+..+.-+.
T Consensus 138 ~~~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr~fk~ 214 (467)
T COG4267 138 CALFVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILRYFKS 214 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHHhccc
Confidence 2333344444455668889999999988888888888887666554 5899999999999999888887777554333
Q ss_pred CCcCCCCCchhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCchhhHHH------HHHHHHHHH---HHHHHh-
Q 012464 218 LKPWDWQAVDSCNQGWWSLLSLMLPSLLSICLEWWWYEIMLIMCGLLSDPQASVS------AMGILIQTT---GLLYVF- 287 (463)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a------~~~~~~~i~---~~~~~~- 287 (463)
+.+ ..+++ -+..+--....+.....++.-.+|+.+-=..++|++-.+ .|.+..-.. .++.++
T Consensus 215 ~~~-i~FdF-------L~~~~~y~SLllIg~FY~lgiwid~FifW~~~~~~~Iag~~~~S~lYDvpiF~ayl~~iPs~vv 286 (467)
T COG4267 215 SRR-IGFDF-------LLYRRKYPSLLLIGFFYNLGIWIDNFIFWKVPTGIEIAGPFFASPLYDVPIFYAYLFIIPSMVV 286 (467)
T ss_pred ccc-cceeh-------hhhhhcchHHHHHHHHHHhHhhhhheeeEecCCCCEeecceecchhhhHHHHHHHHHhcchhhe
Confidence 221 11111 111111223344555556666666655433322111111 122221111 111111
Q ss_pred -HHHHHHHHHHHHHhhhc----CC-------ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCChHHHHHHHH
Q 012464 288 -PNSLNQGLSTLVGQALG----AE-------QPGRAQRTTIMGIIVAFVGGLLASAFAFAVRDAWGKLYTSESAVLALTK 355 (463)
Q Consensus 288 -~~~l~~~~~p~~~~~~g----~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~ 355 (463)
...+.+...+.--+.+. .+ +.+......++.+.-..-+-...++.++++++.+...++-|+. -.
T Consensus 287 F~i~lET~F~~~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~~----~l 362 (467)
T COG4267 287 FLISLETDFQENYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSEY----YL 362 (467)
T ss_pred eeeeeeehHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHH----HH
Confidence 12333444444322221 12 2233333444455555556667778888899998888876542 44
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHH
Q 012464 356 AALPILGLCELGNCPQTAACGILLGSARPKLGVCINFCAFYIIGLPVAAL 405 (463)
Q Consensus 356 ~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~i~~~~~ 405 (463)
+.+++-..+.-.+......-.+..-..+.+.....+..-. ..+-.+.++
T Consensus 363 ~lF~vd~lg~s~~i~f~~ll~i~lyfd~r~i~l~~t~~fl-i~N~ilT~i 411 (467)
T COG4267 363 DLFYVDVLGVSCQIVFMSLLNIFLYFDYRRIALELTALFL-ISNGILTFI 411 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH-HHhHHHHHH
Confidence 5555655555555554444444445555555555444332 344444444
No 46
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=67.70 E-value=92 Score=27.85 Aligned_cols=34 Identities=12% Similarity=0.200 Sum_probs=23.6
Q ss_pred HHHHhHHHHHHHHHHHHHhhhcCCChhhHHHHHH
Q 012464 283 LLYVFPNSLNQGLSTLVGQALGAEQPGRAQRTTI 316 (463)
Q Consensus 283 ~~~~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~ 316 (463)
....+...++.......-++..++|.++.++...
T Consensus 108 ~l~~~~~~~~s~~~h~adk~ae~gn~k~i~~~~~ 141 (265)
T TIGR00822 108 VLTIFVRTITVLFQHAADKAAKEANTAAISRLHV 141 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHhHHHHH
Confidence 3344455667777788888888889888866543
No 47
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=67.66 E-value=1.2e+02 Score=29.06 Aligned_cols=36 Identities=14% Similarity=0.054 Sum_probs=29.8
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Q 012464 307 QPGRAQRTTIMGIIVAFVGGLLASAFAFAVRDAWGK 342 (463)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 342 (463)
+.++.+++.+++.+.+........++.....-|+..
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~ 124 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLM 124 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999998888877776666665
No 48
>COG4267 Predicted membrane protein [Function unknown]
Probab=67.02 E-value=1.1e+02 Score=28.71 Aligned_cols=133 Identities=12% Similarity=0.083 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHHHHHhhh
Q 012464 289 NSLNQGLSTLVGQALGAEQPGRAQRTTIMGIIVAFVGGLLASAFAFAVRDAWGKLYTSESAVLALTKAALPILGLCELGN 368 (463)
Q Consensus 289 ~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~ 368 (463)
.++.....-.++...=+||.++....+.-...+....+..++.+... ..++. +..... ......+..
T Consensus 78 gg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf~--------~~~~~---si~yk~--l~~~~FV~m 144 (467)
T COG4267 78 GGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVFF--------VNNQY---SIVYKI--LACALFVGM 144 (467)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhh--------hcCch---hHHHHH--HHHHHHHHH
Confidence 55566666667777777788888877777766666655555532111 12222 112222 223344445
Q ss_pred hhHHHHHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHh
Q 012464 369 CPQTAACGILLGSARPKLGVCINFCAFYIIGLPVAALMAFELKIGFLGLWYGLAAAQASCVVMMIITLFC 438 (463)
Q Consensus 369 ~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 438 (463)
+........+.+.+|.|.....-.++. .+.+.++.++-. .+..|..++..++..+.......+..|
T Consensus 145 ~~~Wi~~iFlS~lK~y~~iv~sF~iG~-~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr 210 (467)
T COG4267 145 SLVWILMIFLSGLKKYKLIVLSFFIGY-VVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILR 210 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 556666777888888888777777665 566666666544 489999999999988777666555544
No 49
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=66.20 E-value=38 Score=23.95 Aligned_cols=43 Identities=12% Similarity=0.006 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHHH
Q 012464 288 PNSLNQGLSTLVGQALGAEQPGRAQRTTIMGIIVAFVGGLLAS 330 (463)
Q Consensus 288 ~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (463)
..-++......+.+.+.+||.+++++..+++.+++..-.+...
T Consensus 33 lGi~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~g~ 75 (82)
T PF04505_consen 33 LGIVAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIIIGI 75 (82)
T ss_pred HHHHHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3444455566777888899999999999999888765544433
No 50
>PRK09757 PTS system N-acetylgalactosamine-specific transporter subunit IIC; Provisional
Probab=47.39 E-value=2.1e+02 Score=25.65 Aligned_cols=33 Identities=12% Similarity=0.005 Sum_probs=23.4
Q ss_pred HHHhHHHHHHHHHHHHHhhhcCCChhhHHHHHH
Q 012464 284 LYVFPNSLNQGLSTLVGQALGAEQPGRAQRTTI 316 (463)
Q Consensus 284 ~~~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~ 316 (463)
...+...+.....+..-++..++|.++.++...
T Consensus 110 l~~~~~~~~~~~~~~adk~ae~gn~k~i~~~~~ 142 (267)
T PRK09757 110 VILFFYSAFSLFMTKADKCAKEADTAAFSRLNW 142 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHhHHHHH
Confidence 334455667777788888888888888876544
No 51
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=38.85 E-value=1.4e+02 Score=25.75 Aligned_cols=40 Identities=5% Similarity=0.056 Sum_probs=24.0
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 012464 83 KKGTILSQACRRTLSILIVIIFPISILWVNIEHILLSLGQ 122 (463)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 122 (463)
.+++...+.+..++...+.+-++.+++..+..++.++++.
T Consensus 141 E~y~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~v 180 (230)
T PF03904_consen 141 EKYQKRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLHV 180 (230)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhhH
Confidence 3455566666666666665555555556666666666653
No 52
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=34.96 E-value=3.8e+02 Score=24.94 Aligned_cols=31 Identities=13% Similarity=-0.080 Sum_probs=23.0
Q ss_pred c-hhHHHHHHHHHHHHHHHHHHHHHHhccHHH
Q 012464 413 G-FLGLWYGLAAAQASCVVMMIITLFCTDWKL 443 (463)
Q Consensus 413 g-~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~ 443 (463)
| -.|++.+..++.++...+...+.+-.+|.+
T Consensus 302 G~~s~aA~a~vigpLvEVpvml~lV~v~~~~~ 333 (342)
T COG0798 302 GLTSGAALATVVGPLVEVPVMLGLVKVALRIR 333 (342)
T ss_pred CccccchhhhhccchhhHHHHHHHHHHHHHHh
Confidence 5 778899999999888887776666544433
No 53
>PF06808 DctM: DctM-like transporters; InterPro: IPR010656 This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease. In general, C4-dicarboxylate transport systems allow C4-dicarboxylates like succinate, fumarate, and malate to be taken up. TRAP C4-dicarboxylate carriers are secondary carriers that use an electrochemical H+ gradient as the driving force for transport. DctM is an integral membrane protein that is one of the constituents of TRAP carriers [, ]. Note that many family members are hypothetical proteins.
Probab=28.20 E-value=5.6e+02 Score=24.82 Aligned_cols=82 Identities=13% Similarity=0.109 Sum_probs=45.4
Q ss_pred hhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCCh
Q 012464 229 CNQGWWSLLSLMLPSLLSICLEWWWYEIMLIMCGLLSDPQASVSAMGILIQTTGLLYVFPNSLNQGLSTLVGQALGAEQP 308 (463)
Q Consensus 229 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~ 308 (463)
++++.++..+.++|..+.-.. ....+..+... +.|.+++++..-+.-.... +++-+.
T Consensus 205 ~~~~~~~~~~~~~~~l~~p~i-----il~~i~~g~~t--~teaa~~~~~~~l~i~~~~----------------~~~~~~ 261 (416)
T PF06808_consen 205 SLKERWRAFKRAIPALLIPVI-----ILGGIYLGIFT--PTEAAAVAVVYALVIGLFV----------------YRRLSW 261 (416)
T ss_pred hHHHHHHHHHhcchHHHHHHH-----HHHHhhhcccc--hhhhhhhhHHHHHHHHHhh----------------hcccCh
Confidence 556666667777665544332 22334444444 7777777665543211110 445666
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 012464 309 GRAQRTTIMGIIVAFVGGLLASAFA 333 (463)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (463)
++..+..+++.+.+..+...+...-
T Consensus 262 ~~l~~~l~~~~~~~~~i~~iia~a~ 286 (416)
T PF06808_consen 262 KDLWRALVETARTTGMILFIIAAAG 286 (416)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777666555554433
No 54
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=26.79 E-value=5.2e+02 Score=24.05 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=20.2
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHhc
Q 012464 189 VRGVALAAASHTFIVILGLLVYLIFS 214 (463)
Q Consensus 189 ~~g~a~a~~i~~~~~~~~~~~~~~~~ 214 (463)
-.|++++++++.++....+..+.+-.
T Consensus 304 ~s~aA~a~vigpLvEVpvml~lV~v~ 329 (342)
T COG0798 304 TSGAALATVVGPLVEVPVMLGLVKVA 329 (342)
T ss_pred cccchhhhhccchhhHHHHHHHHHHH
Confidence 67889999999988887777666433
No 55
>PTZ00370 STEVOR; Provisional
Probab=25.86 E-value=1.8e+02 Score=26.14 Aligned_cols=31 Identities=19% Similarity=0.367 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc---cHHHHHH
Q 012464 416 GLWYGLAAAQASCVVMMIITLFCT---DWKLQAQ 446 (463)
Q Consensus 416 g~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~~ 446 (463)
|++.-..+-..+..++.+++++|+ .||+..+
T Consensus 258 giaalvllil~vvliilYiwlyrrRK~swkhe~k 291 (296)
T PTZ00370 258 GIAALVLLILAVVLIILYIWLYRRRKNSWKHECK 291 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH
Confidence 433333333344444444444433 5776543
No 56
>TIGR00220 mscL large conductance mechanosensitive channel protein. Protein encodes a channel which opens in response to a membrane stretch force. Probably serves as an osmotic gauge. Carboxy terminus tends to be more divergent across species with a high degree of sequence conservation found at the N-terminus.
Probab=23.69 E-value=1e+02 Score=23.93 Aligned_cols=21 Identities=5% Similarity=0.031 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012464 416 GLWYGLAAAQASCVVMMIITL 436 (463)
Q Consensus 416 g~~~a~~~~~~~~~~~~~~~~ 436 (463)
|..+...+..++.+...+..+
T Consensus 69 G~fl~avInFlIiA~vvf~~v 89 (127)
T TIGR00220 69 GEFIQNIINFLIIAFAIFMII 89 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666555554444
No 57
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=23.22 E-value=1.8e+02 Score=19.21 Aligned_cols=18 Identities=17% Similarity=0.028 Sum_probs=8.2
Q ss_pred HHHHHhccHHHHHHHHHH
Q 012464 433 IITLFCTDWKLQAQRAKE 450 (463)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~ 450 (463)
.++.++...|+..+++..
T Consensus 26 i~~ayr~~~K~~~d~aa~ 43 (60)
T COG4736 26 IYFAYRPGKKGEFDEAAR 43 (60)
T ss_pred HHHHhcccchhhHHHHhc
Confidence 344445444444444433
No 58
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=23.04 E-value=1.9e+02 Score=26.63 Aligned_cols=57 Identities=14% Similarity=0.163 Sum_probs=29.0
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHHHhccch---------hHHHHHHHHHHHHHHHHHHHHHHhccH
Q 012464 381 SARPKLGVCINFCAFYIIGLPVAALMAFELKIGF---------LGLWYGLAAAQASCVVMMIITLFCTDW 441 (463)
Q Consensus 381 ~g~~~~~~~~~~~~~~~i~i~~~~~l~~~~~~g~---------~g~~~a~~~~~~~~~~~~~~~~~~~~~ 441 (463)
.+..+..-..++++. +..|..++-+.+ +++. .|.+++.. ..++.++..+++++|++|
T Consensus 252 ~~~N~~mk~LTvvt~--IflP~t~IaGiy-GMNf~~mP~l~~~~gy~~~l~-~m~~i~~~~~~~fkrk~W 317 (318)
T TIGR00383 252 NKMNEIMKILTVVST--IFIPLTFIAGIY-GMNFKFMPELNWKYGYPAVLI-VMAVIALGPLIYFRRKGW 317 (318)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHH-hCCcccCccccchhHHHHHHH-HHHHHHHHHHHHHHHcCC
Confidence 344444555555553 445666654443 1221 23333333 334445566778888887
No 59
>PRK13955 mscL large-conductance mechanosensitive channel; Provisional
Probab=21.51 E-value=1.3e+02 Score=23.52 Aligned_cols=21 Identities=5% Similarity=-0.021 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012464 416 GLWYGLAAAQASCVVMMIITL 436 (463)
Q Consensus 416 g~~~a~~~~~~~~~~~~~~~~ 436 (463)
|..+...+..++.+...+..+
T Consensus 67 G~fl~avInFlIiA~vvF~iv 87 (130)
T PRK13955 67 GNFIQTIFDFLIIAASIFMFV 87 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555566666555555444433
No 60
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=20.93 E-value=7.1e+02 Score=23.50 Aligned_cols=15 Identities=27% Similarity=0.060 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 012464 320 IVAFVGGLLASAFAF 334 (463)
Q Consensus 320 ~~~~~~~~~~~~~~~ 334 (463)
++.+-+.+|+.++--
T Consensus 35 ~lv~~~~lP~liF~~ 49 (385)
T PF03547_consen 35 KLVFNVFLPALIFSS 49 (385)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334445555544433
No 61
>PRK13954 mscL large-conductance mechanosensitive channel; Provisional
Probab=20.72 E-value=85 Score=24.04 Aligned_cols=21 Identities=14% Similarity=0.161 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 012464 416 GLWYGLAAAQASCVVMMIITL 436 (463)
Q Consensus 416 g~~~a~~~~~~~~~~~~~~~~ 436 (463)
|.++...+..++.+...+..+
T Consensus 64 G~fl~avinFlIiA~vvF~~v 84 (119)
T PRK13954 64 GLFIQSVIDFIIIAFALFIFV 84 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566666666665555544433
Done!