Query 012464
Match_columns 463
No_of_seqs 263 out of 1723
Neff 10.8
Searched_HMMs 29240
Date Mon Mar 25 09:57:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012464.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012464hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 5.4E-51 1.9E-55 398.2 36.0 433 5-440 5-447 (460)
2 3mkt_A Multi antimicrobial ext 99.8 2.8E-19 9.5E-24 173.9 18.9 204 7-211 233-443 (460)
3 4aps_A DI-OR tripeptide H+ sym 88.5 17 0.00057 34.3 28.7 23 409-431 445-467 (491)
4 1pw4_A Glycerol-3-phosphate tr 61.3 99 0.0034 28.3 33.8 21 412-432 410-430 (451)
5 3o7q_A L-fucose-proton symport 22.6 4.2E+02 0.014 23.8 31.5 14 290-303 309-322 (438)
6 4ev6_A Magnesium transport pro 22.5 74 0.0025 28.4 4.1 52 386-441 278-338 (339)
7 2k1k_A Ephrin type-A receptor 19.6 1E+02 0.0034 17.3 2.7 12 190-201 14-25 (38)
8 2knc_B Integrin beta-3; transm 13.6 3.1E+02 0.01 18.3 4.6 47 414-460 14-60 (79)
9 1pw4_A Glycerol-3-phosphate tr 13.5 6.9E+02 0.024 22.3 13.6 223 214-460 8-231 (451)
10 2iub_A CORA, divalent cation t 8.7 1.5E+02 0.0051 26.7 2.1 62 378-441 294-362 (363)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00 E-value=5.4e-51 Score=398.17 Aligned_cols=433 Identities=21% Similarity=0.331 Sum_probs=398.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhHHHhHHHHHHHHHHHHHHHHHhhHHHHHhhhhCCCC
Q 012464 5 MQVAEELNSLRKIACPVAITGLLFQFKSIISMLFLGHLGDIELAGGSLSLGIANITGYSVLKGLAMGMEPICSQAYGAKK 84 (463)
Q Consensus 5 ~~~~~~~k~i~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~ 84 (463)
+..++..|++++.++|.+++++...+.+.+|..+++|+|++++|+++++.++..+. ..+..|++.+..+.++|++|++|
T Consensus 5 ~~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~~~~is~~~g~~~ 83 (460)
T 3mkt_A 5 HRYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMALVPVVAQLNGAGR 83 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHHGGGCTTTTSSSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCC
Confidence 45678899999999999999999999999999999999999999999999998776 78889999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCchHHH
Q 012464 85 GTILSQACRRTLSILIVIIFPISILWVNIEHILLSLGQEQAIISVAKVYIIYSIPELIAQALLNPLRIFLRTQNINKPLT 164 (463)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 164 (463)
+++.++.+++++.+..+.+++..++..+.++++.+++.+++..+.+..|+++..++.++..+....++++++.||++.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 163 (460)
T 3mkt_A 84 QHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAM 163 (460)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 99999999999999999999987667788888888888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh-h---CcccchHHHHHHHHHHHHHHHHHHHHHhcccCCC-cCCCCCchhhhhhHHHHHHH
Q 012464 165 IAASFALIFHIAINIILAMV-L---NLGVRGVALAAASHTFIVILGLLVYLIFSRTALK-PWDWQAVDSCNQGWWSLLSL 239 (463)
Q Consensus 165 ~~~~~~~~~~i~~~~~li~~-~---~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 239 (463)
..++++.++|+++++++++. + ++|+.|+++++.+++.+..++...+.+++++.+. +..+...+++++..|+++++
T Consensus 164 ~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 243 (460)
T 3mkt_A 164 VIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRL 243 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHH
Confidence 99999999999999999975 3 6999999999999999999988877765543321 11111124478899999999
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCChhhHHHHHHHHH
Q 012464 240 MLPSLLSICLEWWWYEIMLIMCGLLSDPQASVSAMGILIQTTGLLYVFPNSLNQGLSTLVGQALGAEQPGRAQRTTIMGI 319 (463)
Q Consensus 240 ~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~l~~~~~p~~~~~~g~~~~~~~~~~~~~~~ 319 (463)
+.|..++++...+.+..++.++++++ ++++|+|+++.++.++...+..+++++..|.+++++|+||.+++++..+++.
T Consensus 244 ~~p~~~~~~~~~~~~~~~~~~~~~~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~ 321 (460)
T 3mkt_A 244 GFPVAAALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGL 321 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999999999999999999999996 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhcCCCcchHHHHHHHHHHHH
Q 012464 320 IVAFVGGLLASAFAFAVRDAWGKLYTSESAVLALTKAALPILGLCELGNCPQTAACGILLGSARPKLGVCINFCAFYIIG 399 (463)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~ 399 (463)
+.+..++++.++++.++++++..+|.+|+++.+.+..++++++++.++++++....+.+++.||+|.++..++++.|+++
T Consensus 322 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~ 401 (460)
T 3mkt_A 322 MTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLG 401 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998889999999999999999999999999999999999999999999998999
Q ss_pred HHHHHHHHHH----hc-cchhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 012464 400 LPVAALMAFE----LK-IGFLGLWYGLAAAQASCVVMMIITLFCTD 440 (463)
Q Consensus 400 i~~~~~l~~~----~~-~g~~g~~~a~~~~~~~~~~~~~~~~~~~~ 440 (463)
+|+++++... ++ +|..|+|+++.+++.+..++..++++|..
T Consensus 402 i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~~ 447 (460)
T 3mkt_A 402 LPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQ 447 (460)
T ss_dssp HHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSSC
T ss_pred HHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999887 66 89999999999999999888776666543
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.82 E-value=2.8e-19 Score=173.91 Aligned_cols=204 Identities=16% Similarity=0.139 Sum_probs=189.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChhhHhHHHhHHHHHHHHHHHHHHHHHhhHHHHHhhhhCCCChh
Q 012464 7 VAEELNSLRKIACPVAITGLLFQFKSIISMLFLGHLGDIELAGGSLSLGIANITGYSVLKGLAMGMEPICSQAYGAKKGT 86 (463)
Q Consensus 7 ~~~~~k~i~~~~~p~~~~~~~~~l~~~i~~~~i~~lg~~~~~~~~~~~~i~~~~~~~~~~gl~~~~~~~~s~~~g~~~~~ 86 (463)
.++..|++++.++|.+++++...+...+|+.+++++|++++|+++++.++.++. ..+..+++++..|.+++++|++|++
T Consensus 233 ~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~-~~~~~~~~~a~~p~i~~~~g~~~~~ 311 (460)
T 3mkt_A 233 QPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLV-FMFPMSIGAAVSIRVGHKLGEQDTK 311 (460)
T ss_dssp TTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred CHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 356789999999999999999999999999999999999999999999999998 8899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCCchHHHH
Q 012464 87 ILSQACRRTLSILIVIIFPISIL-WVNIEHILLSLGQEQAIISVAKVYIIYSIPELIAQALLNPLRIFLRTQNINKPLTI 165 (463)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 165 (463)
+.++..+.+......++++.+++ ..+.+++..++..|++..+.+..++++..+..++.++.....+.+++.||++.+++
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 391 (460)
T 3mkt_A 312 GAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFH 391 (460)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 99999999999999999998855 78888999988888888889999999999999999999999999999999999999
Q ss_pred HHHHHH-HHHHHHHHHHHHh----hC-cccchHHHHHHHHHHHHHHHHHHHH
Q 012464 166 AASFAL-IFHIAINIILAMV----LN-LGVRGVALAAASHTFIVILGLLVYL 211 (463)
Q Consensus 166 ~~~~~~-~~~i~~~~~li~~----~~-~g~~g~a~a~~i~~~~~~~~~~~~~ 211 (463)
.++++. ++++++++++.+. .+ +|+.|+++++.+++.+..+...+.+
T Consensus 392 ~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~ 443 (460)
T 3mkt_A 392 RTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRL 443 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHH
Confidence 999998 9999999999886 56 9999999999999999887765444
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=88.48 E-value=17 Score=34.33 Aligned_cols=23 Identities=0% Similarity=-0.152 Sum_probs=9.8
Q ss_pred HhccchhHHHHHHHHHHHHHHHH
Q 012464 409 ELKIGFLGLWYGLAAAQASCVVM 431 (463)
Q Consensus 409 ~~~~g~~g~~~a~~~~~~~~~~~ 431 (463)
..+.+....+.......++..+.
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~ 467 (491)
T 4aps_A 445 YNAKSEVAYFSYFGLGSVVLGIV 467 (491)
T ss_dssp GGGSSTTHHHHHTHHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHHHHHHH
Confidence 33345444444444443433333
No 4
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=61.31 E-value=99 Score=28.30 Aligned_cols=21 Identities=14% Similarity=0.357 Sum_probs=10.8
Q ss_pred cchhHHHHHHHHHHHHHHHHH
Q 012464 412 IGFLGLWYGLAAAQASCVVMM 432 (463)
Q Consensus 412 ~g~~g~~~a~~~~~~~~~~~~ 432 (463)
.|....++...+..++..++.
T Consensus 410 ~g~~~~~~~~~~~~~~~~~~~ 430 (451)
T 1pw4_A 410 FGWDGGFMVMIGGSILAVILL 430 (451)
T ss_dssp SCSHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHH
Confidence 466666555555444444433
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=22.64 E-value=4.2e+02 Score=23.76 Aligned_cols=14 Identities=7% Similarity=-0.081 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHhhh
Q 012464 290 SLNQGLSTLVGQAL 303 (463)
Q Consensus 290 ~l~~~~~p~~~~~~ 303 (463)
.++......+.+.+
T Consensus 309 ~~~~~~~g~l~~r~ 322 (438)
T 3o7q_A 309 FIGRFTGTWLISRF 322 (438)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHh
Confidence 34444445555444
No 6
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=22.52 E-value=74 Score=28.41 Aligned_cols=52 Identities=10% Similarity=0.207 Sum_probs=28.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhccc---------hhHHHHHHHHHHHHHHHHHHHHHHhccH
Q 012464 386 LGVCINFCAFYIIGLPVAALMAFELKIG---------FLGLWYGLAAAQASCVVMMIITLFCTDW 441 (463)
Q Consensus 386 ~~~~~~~~~~~~i~i~~~~~l~~~~~~g---------~~g~~~a~~~~~~~~~~~~~~~~~~~~~ 441 (463)
..-..++++ .+.+|..++-+.+ +++ ..|.|++..+ .++.++..+++++|++|
T Consensus 278 ~mk~LTiit--~IflP~T~IaGiy-GMNf~~mPel~~~~gy~~~l~~-m~~~~~~~~~~fkrk~W 338 (339)
T 4ev6_A 278 IMKILTMVT--TIFAVPMWITGIY-GMNFSYLPLANNPQGFWLVMAL-MVVIIMIFVYIFRRSGW 338 (339)
T ss_dssp HHHHHHHHH--HHSSHHHHHHHHT-TCCCSCCTTSSCTTHHHHHHHH-HHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHH--HHHHHHHHHHhhc-cCcCCCCCCccCchHHHHHHHH-HHHHHHHHHHHHHHcCC
Confidence 333445544 3456777665543 122 2344444443 35555666778888888
No 7
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=19.62 E-value=1e+02 Score=17.27 Aligned_cols=12 Identities=8% Similarity=-0.108 Sum_probs=5.3
Q ss_pred chHHHHHHHHHH
Q 012464 190 RGVALAAASHTF 201 (463)
Q Consensus 190 ~g~a~a~~i~~~ 201 (463)
.|..++.+++-.
T Consensus 14 AGiVvG~v~gv~ 25 (38)
T 2k1k_A 14 VAVIFGLLLGAA 25 (38)
T ss_dssp HHHHHHHHHHHH
T ss_pred eeeehHHHHHHH
Confidence 344444444433
No 8
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=13.64 E-value=3.1e+02 Score=18.28 Aligned_cols=47 Identities=13% Similarity=0.112 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHcccchhhhc
Q 012464 414 FLGLWYGLAAAQASCVVMMIITLFCTDWKLQAQRAKELTQSSEEEAS 460 (463)
Q Consensus 414 ~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (463)
+-|+..+.++.-++..++.-+...-.+.+...+.++|+.++.=++.+
T Consensus 14 v~gvi~gilliGllllliwk~~~~i~DrrE~~kFEkE~~~~~w~~~~ 60 (79)
T 2knc_B 14 LLSVMGAILLIGLAALLIWKLLITIHDRKEFAKFEEERARAKWDTAN 60 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=13.45 E-value=6.9e+02 Score=22.29 Aligned_cols=223 Identities=8% Similarity=-0.122 Sum_probs=0.0
Q ss_pred cccCCCcCCCCCchhhhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhHHHHHH
Q 012464 214 SRTALKPWDWQAVDSCNQGWWSLLSLMLPSLLSICLEWWWYEIMLIMCGLLSDPQASVSAMGILIQTTGLLYVFPNSLNQ 293 (463)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~l~~ 293 (463)
....+.+..+.+.+.++...+.+.....-.+...............+...+ .++.+.+ +......+...++.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g-------~~~~~~~~~~~~~~ 79 (451)
T 1pw4_A 8 PHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLG-------FALSGISIAYGFSK 79 (451)
T ss_dssp CCCCCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHH-------HHHHHHHHHHHHHH
T ss_pred CCcccCchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHH-------HHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 012464 294 GLSTLVGQALGAEQPGRAQRTTIMGIIVAFVGGLLASAFAFAVRDAWGKLYTSESAVLALTKAALPILGLCELGNCPQTA 373 (463)
Q Consensus 294 ~~~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~ 373 (463)
.....+++.+| .|+.+..+........+...+.+.. ..-+. .-.....+.-+..+.........
T Consensus 80 ~~~G~l~dr~g----------~r~~l~~~~~~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~l~G~~~~~~~~~~~~~ 143 (451)
T 1pw4_A 80 FIMGSVSDRSN----------PRVFLPAGLILAAAVMLFMGFVPWA-TSSIA-----VMFVLLFLCGWFQGMGWPPCGRT 143 (451)
T ss_dssp HHHHHHHHHSC----------HHHHHHHHHHHHHHHHHHHHHCHHH-HSSSS-----HHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HhHHHHHHhcC----------chHHHHHHHHHHHHHHHHHHhhhhc-cccHH-----HHHHHHHHHHHHhhhccchHHHH
Q ss_pred HHHHhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHc
Q 012464 374 ACGILLGSARPKLGVCINFCAFYIIGLPVAALMAFELKIG-FLGLWYGLAAAQASCVVMMIITLFCTDWKLQAQRAKELT 452 (463)
Q Consensus 374 ~~~~l~~~g~~~~~~~~~~~~~~~i~i~~~~~l~~~~~~g-~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (463)
.........+.+.....+........+.....-.....+| .....+...+..++..++.....+....+++.++.++..
T Consensus 144 i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (451)
T 1pw4_A 144 MVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK 223 (451)
T ss_dssp HHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC
T ss_pred HHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhc
Q ss_pred ccchhhhc
Q 012464 453 QSSEEEAS 460 (463)
Q Consensus 453 ~~~~~~~~ 460 (463)
+..+++.+
T Consensus 224 ~~~~~~~~ 231 (451)
T 1pw4_A 224 NDYPDDYN 231 (451)
T ss_dssp CC------
T ss_pred ccccccch
No 10
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=8.70 E-value=1.5e+02 Score=26.72 Aligned_cols=62 Identities=11% Similarity=0.198 Sum_probs=0.0
Q ss_pred hhhcCCCcchHHHHHHHHHHHHHHHHHH-------HHHHhccchhHHHHHHHHHHHHHHHHHHHHHHhccH
Q 012464 378 LLGSARPKLGVCINFCAFYIIGLPVAAL-------MAFELKIGFLGLWYGLAAAQASCVVMMIITLFCTDW 441 (463)
Q Consensus 378 l~~~g~~~~~~~~~~~~~~~i~i~~~~~-------l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~ 441 (463)
..+.......-..++++ .+.+|+.++ +...|..+-...++......++.++..+++++|++|
T Consensus 294 ~is~~~N~imk~LTiit--~IflP~T~IaGiyGMNf~~mPel~~~~Gy~~~l~~m~~i~~~~~~~Fkrk~W 362 (363)
T 2iub_A 294 SVSNKTNEVMKVLTIIA--TIFMPLTFIAGIYGMNFEYMPELRWKWGYPVVLAVMGVIAVIMVVYFKKKKW 362 (363)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHHHHHHHTTSCC--------------CHHHHHHHHHHHHHHHTTTTSCC-
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhcccCCCCCcccCcHHHHHHHHHHHHHHHHHHHHHHHccc
Done!