Query 012464
Match_columns 463
No_of_seqs 263 out of 1723
Neff 10.8
Searched_HMMs 13730
Date Mon Mar 25 09:57:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012464.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012464hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2oara1 f.16.1.1 (A:10-118) Ga 30.3 14 0.001 25.0 2.3 15 416-430 61-75 (109)
2 d1fftc_ f.25.1.1 (C:) Cytochro 8.6 2.1E+02 0.015 20.8 4.7 25 17-41 9-33 (185)
3 d3b60a2 f.37.1.1 (A:10-328) Mu 5.7 5.5E+02 0.04 19.2 20.1 23 268-290 269-291 (319)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 5.5 6.6E+02 0.048 19.9 35.4 24 411-434 406-429 (447)
5 d1nkzb_ f.3.1.1 (B:) Light-har 5.2 2.4E+02 0.018 14.5 4.5 33 307-339 7-39 (41)
6 d2fyuk1 f.23.15.1 (K:1-53) Sub 4.8 2.7E+02 0.02 15.4 2.4 28 76-103 2-29 (53)
7 d2hyda2 f.37.1.1 (A:1-323) Put 4.5 6.7E+02 0.049 18.7 11.5 16 19-34 21-36 (323)
8 d1lghb_ f.3.1.1 (B:) Light-har 4.4 3E+02 0.022 14.5 2.6 31 308-338 11-41 (43)
9 d2yvxa3 f.57.1.1 (A:276-448) M 3.1 7.9E+02 0.057 17.3 8.6 32 77-108 66-97 (173)
10 d1ijdb_ f.3.1.1 (B:) Light-har 2.4 4.8E+02 0.035 13.2 4.3 31 309-339 10-40 (40)
No 1
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=30.25 E-value=14 Score=24.98 Aligned_cols=15 Identities=7% Similarity=-0.128 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 012464 416 GLWYGLAAAQASCVV 430 (463)
Q Consensus 416 g~~~a~~~~~~~~~~ 430 (463)
|..+...+..++...
T Consensus 61 G~fi~a~InFlIiA~ 75 (109)
T d2oara1 61 NVLLSAAINFFLIAF 75 (109)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444454444443
No 2
>d1fftc_ f.25.1.1 (C:) Cytochrome O ubiquinol oxidase, subunit III {Escherichia coli [TaxId: 562]}
Probab=8.63 E-value=2.1e+02 Score=20.76 Aligned_cols=25 Identities=4% Similarity=-0.053 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Q 012464 17 IACPVAITGLLFQFKSIISMLFLGH 41 (463)
Q Consensus 17 ~~~p~~~~~~~~~l~~~i~~~~i~~ 41 (463)
+++...+..-......++-.++..+
T Consensus 9 ~G~w~Fi~se~~~F~~lf~~y~~~~ 33 (185)
T d1fftc_ 9 FGFWIYLMSDCILFSILFATYAVLV 33 (185)
T ss_dssp HHHHTTHHHHTTHHHHHHHHHTTTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555455555555555555
No 3
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=5.70 E-value=5.5e+02 Score=19.20 Aligned_cols=23 Identities=9% Similarity=0.046 Sum_probs=9.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHH
Q 012464 268 QASVSAMGILIQTTGLLYVFPNS 290 (463)
Q Consensus 268 ~~~~a~~~~~~~i~~~~~~~~~~ 290 (463)
...+|..............+...
T Consensus 269 ~it~g~l~~~~~~~~~~~~pl~~ 291 (319)
T d3b60a2 269 SLTAGTITVVFSSMIALMRPLKS 291 (319)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Confidence 44444443333333333333333
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=5.52 E-value=6.6e+02 Score=19.92 Aligned_cols=24 Identities=17% Similarity=0.365 Sum_probs=12.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHH
Q 012464 411 KIGFLGLWYGLAAAQASCVVMMII 434 (463)
Q Consensus 411 ~~g~~g~~~a~~~~~~~~~~~~~~ 434 (463)
+.|..+..+......++..++...
T Consensus 406 ~~g~~~~~~~~~~~~~~~~~~~~~ 429 (447)
T d1pw4a_ 406 FFGWDGGFMVMIGGSILAVILLIV 429 (447)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHHHH
Confidence 456666665555554555444443
No 5
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=5.18 E-value=2.4e+02 Score=14.48 Aligned_cols=33 Identities=24% Similarity=0.182 Sum_probs=24.8
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012464 307 QPGRAQRTTIMGIIVAFVGGLLASAFAFAVRDA 339 (463)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (463)
+.++..+....+.+....+++..=++.+...|+
T Consensus 7 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tPW 39 (41)
T d1nkzb_ 7 QSEELHKYVIDGTRVFLGLALVAHFLAFSATPW 39 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSST
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhCcc
Confidence 357788888888888888887777776666655
No 6
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.82 E-value=2.7e+02 Score=15.42 Aligned_cols=28 Identities=7% Similarity=-0.109 Sum_probs=16.5
Q ss_pred HhhhhCCCChhhHHHHHHHHHHHHHHHH
Q 012464 76 CSQAYGAKKGTILSQACRRTLSILIVII 103 (463)
Q Consensus 76 ~s~~~g~~~~~~~~~~~~~~~~~~~~~~ 103 (463)
.++..|++..|.++....+...+...-+
T Consensus 2 l~k~iG~k~~~ia~~wips~~~~G~a~g 29 (53)
T d2fyuk1 2 LTRFLGPRYRQLARNWVPTASLWGAVGA 29 (53)
T ss_dssp GGGGCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHhhhhhhhhhhhh
Confidence 4566676666666666666555554433
No 7
>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}
Probab=4.46 E-value=6.7e+02 Score=18.68 Aligned_cols=16 Identities=6% Similarity=-0.176 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 012464 19 CPVAITGLLFQFKSII 34 (463)
Q Consensus 19 ~p~~~~~~~~~l~~~i 34 (463)
+...+......+.+.+
T Consensus 21 ~~~~~~~~~~~~~p~l 36 (323)
T d2hyda2 21 IVGIIKFGIPMLIPLL 36 (323)
T ss_dssp HHHHTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 8
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=4.42 E-value=3e+02 Score=14.52 Aligned_cols=31 Identities=3% Similarity=-0.046 Sum_probs=16.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 012464 308 PGRAQRTTIMGIIVAFVGGLLASAFAFAVRD 338 (463)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (463)
-++..+.+..+...-..+++..=++.+...|
T Consensus 11 A~EfH~~~~~g~~~F~~iAvvAHiLvw~wrP 41 (43)
T d1lghb_ 11 AIAVHDQFKTTFSAFIILAAVAHVLVWVWKP 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4556666666666655555555444444333
No 9
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=3.11 E-value=7.9e+02 Score=17.27 Aligned_cols=32 Identities=6% Similarity=0.022 Sum_probs=19.1
Q ss_pred hhhhCCCChhhHHHHHHHHHHHHHHHHHHHHH
Q 012464 77 SQAYGAKKGTILSQACRRTLSILIVIIFPISI 108 (463)
Q Consensus 77 s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (463)
+-+.|+-+.++.++.+.+=+...++.+..+.+
T Consensus 66 ~La~g~i~~~~~~~~l~kE~~vgll~G~~l~~ 97 (173)
T d2yvxa3 66 ALATRDLDLRDWRRVFLKEMGVGLLLGLTLSF 97 (173)
T ss_dssp HHHTTCSCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445566677776666666666665553
No 10
>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=2.44 E-value=4.8e+02 Score=13.24 Aligned_cols=31 Identities=23% Similarity=0.216 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 012464 309 GRAQRTTIMGIIVAFVGGLLASAFAFAVRDA 339 (463)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (463)
++..+....+.+....+++..=++.+...|+
T Consensus 10 EElHk~vIdGtRvF~~iA~~AH~La~~~tPW 40 (40)
T d1ijdb_ 10 EELHKHVIDGTRVFLVIAAIAHFLAFTLTPW 40 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHhhcchhHHHHHHHHHHHHHHhcCCC
Done!