BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012466
(463 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q68CP9|ARID2_HUMAN AT-rich interactive domain-containing protein 2 OS=Homo sapiens
GN=ARID2 PE=1 SV=2
Length = 1835
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 84/333 (25%), Positives = 143/333 (42%), Gaps = 48/333 (14%)
Query: 64 NHKRIVLALQSGLKSELTWALNTLTLLSFKEKDDMRKDATPLAKIPGLLDALLQVIDDWR 123
++ ++VL+L SGL +E+ +A+N TLLS + K M+ + P KI LL A V DD
Sbjct: 157 DYNKLVLSLLSGLPNEVDFAINVCTLLSNESKHVMQLEKDP--KIITLLLANAGVFDD-- 212
Query: 124 DIALPKELSKGPRARTLGVNSLVTGFGSEFEALGSINNAFPRSGVGSGSSAADSLVQKNA 183
TLG S T FG E++ + + + D + +N
Sbjct: 213 ---------------TLG--SFSTVFGEEWKEKTDRDFVKFWKDIVDDNEVRDLISDRNK 255
Query: 184 ARVRSSEWW-----FDEDGLFNLDDEGRAEKQQCAVGASNIIRNFSFMPDNEVIMAQHRH 238
+ +S W F ++D Q AV I+RN SF N ++A +R
Sbjct: 256 SHEGTSGEWIWESLFHPPRKLGINDIEGQRVLQIAV----ILRNLSFEEGNVKLLAANRT 311
Query: 239 CLETVFQCIEDHVTEDEELVTNALETIVNLAP--LLDLRIFSSSKQSYIKITREKRAVEA 296
CL + H +L L+T+ N+A LLD F ++ + +T+ + +
Sbjct: 312 CLRFLLLSAHSHFISLRQL---GLDTLGNIAAELLLDPVDFKTTHLMFHTVTKCLMSRDR 368
Query: 297 IMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQ-IHKRLVDLMSLPAFDAQAAA 355
+ + G E+LG L DN + +V Q ++ ++ ++LP +
Sbjct: 369 FLKMRG----------MEILGNLCKAEDNGVLICEYVDQDSYREIICHLTLPDVLLVIST 418
Query: 356 VGALYNLAEV-NVDCRLKLASERWAIDRLLRVI 387
+ LY L E+ +V C K+A +ID L+ ++
Sbjct: 419 LEVLYMLTEMGDVAC-TKIAKVEKSIDMLVCLV 450
>sp|O14497|ARI1A_HUMAN AT-rich interactive domain-containing protein 1A OS=Homo sapiens
GN=ARID1A PE=1 SV=3
Length = 2285
Score = 40.0 bits (92), Expect = 0.039, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 37/51 (72%), Gaps = 3/51 (5%)
Query: 67 RIVLALQSGLKSELTWALNTLTLLSFKEKDDMRKDATPLAKIPGLLDALLQ 117
R++++L+SGL +E TWAL+T+ +L + + M + L+++PGLL+ L++
Sbjct: 1671 RVMMSLKSGLLAESTWALDTINILLYDDNSIMTFN---LSQLPGLLELLVE 1718
>sp|A2BH40|ARI1A_MOUSE AT-rich interactive domain-containing protein 1A OS=Mus musculus
GN=Arid1a PE=1 SV=1
Length = 2283
Score = 40.0 bits (92), Expect = 0.042, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 37/51 (72%), Gaps = 3/51 (5%)
Query: 67 RIVLALQSGLKSELTWALNTLTLLSFKEKDDMRKDATPLAKIPGLLDALLQ 117
R++++L+SGL +E TWAL+T+ +L + + M + L+++PGLL+ L++
Sbjct: 1672 RVMMSLKSGLLAESTWALDTINILLYDDNSIMTFN---LSQLPGLLELLVE 1719
>sp|Q8NFD5|ARI1B_HUMAN AT-rich interactive domain-containing protein 1B OS=Homo sapiens
GN=ARID1B PE=1 SV=2
Length = 2236
Score = 35.8 bits (81), Expect = 0.71, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 34/51 (66%), Gaps = 3/51 (5%)
Query: 67 RIVLALQSGLKSELTWALNTLTLLSFKEKDDMRKDATPLAKIPGLLDALLQ 117
R++++L+SGL +E TWAL+T+ +L + DD L+++ G L+ L++
Sbjct: 1625 RVMMSLKSGLLAESTWALDTINILLY---DDSTVATFNLSQLSGFLELLVE 1672
>sp|O00507|USP9Y_HUMAN Probable ubiquitin carboxyl-terminal hydrolase FAF-Y OS=Homo sapiens
GN=USP9Y PE=1 SV=2
Length = 2555
Score = 35.4 bits (80), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 75/188 (39%), Gaps = 44/188 (23%)
Query: 63 QNHKRIVLALQSGLKSELTWALNTLTLLSFKEKDDMRKDATP---LAKIPGLLDALLQVI 119
+NH+ ++ +L+ +K +L N EK D + D + K+P +L L+
Sbjct: 1747 RNHQNLLDSLEQYIKGDLLEGANAYHC----EKCDKKVDTVKRLLIKKLPRVLAIQLKRF 1802
Query: 120 D-DW-RDIAL--------PKELSKGP----------RARTLGVNSLV---------TGFG 150
D DW R+ A+ P+EL GP R N L+ T G
Sbjct: 1803 DYDWERECAIKFNDYFEFPRELDMGPYTVAGVANLERDNVNSENELIEQKEQSDNETAGG 1862
Query: 151 SEFEALGSINNAFPRSGVGSGSSAADSLVQKNAARVRSSEWWFDEDGLFN---LDDEGRA 207
+++ +G SG SG ++Q+N ++ W+ +DG +DD+
Sbjct: 1863 TKYRLVG----VLVHSGQASGGHYYSYIIQRNGKDDQTDHWYKFDDGDVTECKMDDDEEM 1918
Query: 208 EKQQCAVG 215
K QC G
Sbjct: 1919 -KNQCFGG 1925
>sp|Q8NCT3|K0895_HUMAN Uncharacterized protein KIAA0895 OS=Homo sapiens GN=KIAA0895 PE=2
SV=4
Length = 520
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 9/107 (8%)
Query: 208 EKQQCAVGASNIIRNFSFMPDNEV---IMAQHRHCLETVFQCIEDHVTEDEELVTNALET 264
EK++ S+ N F N ++A+H H + + I H+TED L++ A T
Sbjct: 248 EKEKLRFFKSDYTYNPQFEYANPALPSVLAKHSHASDRFLKQIVVHLTED--LLSRASMT 305
Query: 265 IVNLAPLLDLRIFSSSKQSYIK-ITREKRAVEAIMGI--LGSPFKAW 308
+VN P L + + S++++ +++ + R + GI L P+ +W
Sbjct: 306 VVNGCPTLTINV-STAREHWLEGMLRHEIGTHYFRGINNLQQPWNSW 351
>sp|D4D4B1|VPS10_TRIVH Vacuolar protein sorting/targeting protein 10 OS=Trichophyton
verrucosum (strain HKI 0517) GN=VPS10 PE=3 SV=1
Length = 1486
Score = 34.7 bits (78), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 242 TVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGIL 301
T F D V ED++++T+ E + + + + I ++++ TREK+ V I
Sbjct: 323 TSFTMNLDGVNEDKDMITD-FEQVSGIQGIFLVNIVENAEEVKKGATREKKLVSRISFDD 381
Query: 302 GSPFKAWHCAAAELLGRLIINPDN 325
G FK C EL I P N
Sbjct: 382 GRTFKPLKCGDKELHLHSITRPSN 405
>sp|D4AQV3|VPS10_ARTBC Vacuolar protein sorting/targeting protein 10 OS=Arthroderma
benhamiae (strain ATCC MYA-4681 / CBS 112371) GN=VPS10
PE=3 SV=1
Length = 1486
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
Query: 242 TVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGIL 301
T F D V ED++++T+ E + + + + I ++++ TREK+ V I
Sbjct: 323 TSFTMNLDGVNEDKDMITD-FEQVSGIQGIFLVNIVENAEEVKKGATREKKLVSRISFDD 381
Query: 302 GSPFKAWHCAAAELLGRLIINPDN 325
G FK C EL I P N
Sbjct: 382 GRTFKPLKCGDKELHLHSITRPSN 405
>sp|O74365|SOL1_SCHPO SWI/SNF chromatin-remodeling complex subunit sol1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sol1 PE=1 SV=1
Length = 865
Score = 33.9 bits (76), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 15/92 (16%)
Query: 64 NHKRIVLALQSGLKSELTWALNTLTLLSFKEKDDMRKDATPLAKIPGLLDALL----QVI 119
N + + ++LQS L+ E+T+A+N L +L+ + +K PL++ ++DAL+ Q +
Sbjct: 429 NIQALCMSLQSTLEKEITYAMNVLLILT-----NDQKWMFPLSECQDVVDALIDVATQCL 483
Query: 120 DDWRDIALPKE-----LSKGPRARTLGVNSLV 146
D+ + LP E K P R L N V
Sbjct: 484 DNLLSV-LPNEDLMEIADKRPSYRQLLYNCCV 514
>sp|Q4AAR2|KCY_MYCHJ Cytidylate kinase OS=Mycoplasma hyopneumoniae (strain J / ATCC
25934 / NCTC 10110) GN=cmk PE=3 SV=1
Length = 229
Score = 33.9 bits (76), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 7/123 (5%)
Query: 159 INNAFPRSGVGSGS--SAADSLVQKNAARVRSSEWWFDE--DGLFNLDDEGRAEKQQCAV 214
I N F + +GS A QKN + S +LD EG Q V
Sbjct: 25 IANKFNYLFINTGSLYRAIAFFCQKNQISITSERKMIKHLPPNFLSLDFEGNVWLQNQNV 84
Query: 215 GASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDL 274
SN++RN + N I+AQ+ + V + +++ + ++ +T N+ P DL
Sbjct: 85 --SNLLRN-DLISKNAAIIAQYPQIRKIVTEILQNFQKNHKGIIMEGRDTTYNVMPDADL 141
Query: 275 RIF 277
+IF
Sbjct: 142 KIF 144
>sp|Q4A8U3|KCY_MYCH7 Cytidylate kinase OS=Mycoplasma hyopneumoniae (strain 7448) GN=cmk
PE=3 SV=1
Length = 229
Score = 33.9 bits (76), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 52/123 (42%), Gaps = 7/123 (5%)
Query: 159 INNAFPRSGVGSGS--SAADSLVQKNAARVRSSEWWFDE--DGLFNLDDEGRAEKQQCAV 214
I N F + +GS A QKN + S +LD EG Q V
Sbjct: 25 IANKFNYLFINTGSLYRAIAFFCQKNQISITSERKMIKHLPPNFLSLDFEGNVWLQNQNV 84
Query: 215 GASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDL 274
SN++RN + N I+AQ+ + V + +++ + ++ +T N+ P DL
Sbjct: 85 --SNLLRN-DLISKNAAIIAQYPQIRKIVTEILQNFQKNHKGIIMEGRDTTYNVMPDADL 141
Query: 275 RIF 277
+IF
Sbjct: 142 KIF 144
>sp|Q32ES6|MDTH_SHIDS Multidrug resistance protein MdtH OS=Shigella dysenteriae serotype
1 (strain Sd197) GN=mdtH PE=3 SV=2
Length = 401
Score = 33.1 bits (74), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Query: 296 AIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAA 355
A MGI P+ W LG + +P ++ +PQ R L+ + D+ A
Sbjct: 91 ATMGIAHEPWLLWFSCLLSGLGGTLFDPPRSALVVKLMPQQRGRFFSLLMMQ--DSAGAV 148
Query: 356 VGALYNLAEVNVDCRLKLAS 375
+GAL + D RL A+
Sbjct: 149 IGALLGSWLLQYDFRLVCAT 168
>sp|Q601X7|KCY_MYCH2 Cytidylate kinase OS=Mycoplasma hyopneumoniae (strain 232) GN=cmk
PE=3 SV=1
Length = 229
Score = 33.1 bits (74), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 7/123 (5%)
Query: 159 INNAFPRSGVGSGS--SAADSLVQKNAARVRSSEWWFDE--DGLFNLDDEGRAEKQQCAV 214
I N F + +GS A QKN + S +LD EG Q V
Sbjct: 25 IANKFNYLFINTGSLYRAIAFFCQKNQISITSERKMIKHLPPNFLSLDFEGNVWLQNQNV 84
Query: 215 GASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDL 274
SN++RN + N I+AQ+ + V + ++ + ++ +T N+ P DL
Sbjct: 85 --SNLLRN-DLISKNAAIIAQYPQIRKIVTEILQSFQKNHKGIIMEGRDTTYNVMPDADL 141
Query: 275 RIF 277
+IF
Sbjct: 142 KIF 144
>sp|Q5T2S8|ARMC4_HUMAN Armadillo repeat-containing protein 4 OS=Homo sapiens GN=ARMC4 PE=2
SV=1
Length = 1044
Score = 33.1 bits (74), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 48/107 (44%), Gaps = 17/107 (15%)
Query: 208 EKQQCAVGASNIIRNF--SFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETI 265
E + A+ A II N + +NE + HC ++QC ED T D + L+ +
Sbjct: 663 ENYRAAIKAERIIENLVKNLNSENEQL---QEHCAMAIYQCAEDKETRDLVRLHGGLKPL 719
Query: 266 VNLAPLLDLR-----------IFSSSKQSYIKITREKRAVEAIMGIL 301
+L D + S SK++ K RE +A+E ++G+L
Sbjct: 720 ASLLNNTDNKERLAAVTGAIWKCSISKENVTKF-REYKAIETLVGLL 765
>sp|O43028|VAC8_SCHPO Vacuolar protein 8 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=vac8 PE=1 SV=4
Length = 550
Score = 33.1 bits (74), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 53/109 (48%), Gaps = 10/109 (9%)
Query: 264 TIVNLAPLLDLRIFSSSKQSYIKITR------EKRAVEAIMGILGSPFKAWHCAAAELLG 317
TI+ + LDL+ S+ ++ +IT ++ +E ++ +L SP AA+ LG
Sbjct: 53 TILAYSDNLDLQ--RSAALAFAEITEKDVREVDRETIEPVLFLLQSPDAEIQRAASVALG 110
Query: 318 RLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVN 366
L +N +N+ ++ L+ M P + Q AVG + NLA ++
Sbjct: 111 NLAVNAENKALVVKL--NGLDLLIRQMMSPHVEVQCNAVGCITNLATLD 157
>sp|P25043|PSB2_YEAST Proteasome subunit beta type-2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=PUP1 PE=1 SV=1
Length = 261
Score = 32.7 bits (73), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 36 GSGSAADSAAPTTLLGPSLQVHSSFADQNHKRIVLALQ 73
G+G+AAD+ A T L+G ++++HS + + R+V ALQ
Sbjct: 74 GAGTAADTEAVTQLIGSNIELHSLYTSRE-PRVVSALQ 110
>sp|Q8IN94|OSA_DROME Trithorax group protein osa OS=Drosophila melanogaster GN=osa PE=1
SV=1
Length = 2716
Score = 32.7 bits (73), Expect = 6.0, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 67 RIVLALQSGLKSELTWALNTLTLLSFKE 94
RI +A++SGL +E TWAL+ L +L F +
Sbjct: 1806 RIFMAMRSGLLTECTWALDVLNVLLFDD 1833
>sp|Q54RZ7|Y1199_DICDI Probable serine/threonine-protein kinase DDB_G0282895
OS=Dictyostelium discoideum GN=DDB_G0282895 PE=3 SV=1
Length = 1634
Score = 32.0 bits (71), Expect = 9.5, Method: Composition-based stats.
Identities = 30/137 (21%), Positives = 56/137 (40%), Gaps = 29/137 (21%)
Query: 332 FVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPH 391
F+ + K +VD + A +A A L NL+ +++C L++ S+
Sbjct: 1307 FIDIMEKPIVDATNKNAEKTRAQAAQILINLSISSIECLLEVKSK-----------NALG 1355
Query: 392 PVPEVCRKAAMILESLVSEPQNRVLLLAYENAFAEI-------------LFSDGRYSDTF 438
P+ ++C+ + + E + ++L E A AE+ +F++G +S
Sbjct: 1356 PILDICKFGQAFAHTQIEESELQILQFLGEGALAEVHKGIWKGKEVAVKIFNEGSFSFRL 1415
Query: 439 ARILYE-----LTSRPN 450
L E L S PN
Sbjct: 1416 EDFLKEVAILGLISHPN 1432
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 166,673,816
Number of Sequences: 539616
Number of extensions: 6865393
Number of successful extensions: 30588
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 30042
Number of HSP's gapped (non-prelim): 542
length of query: 463
length of database: 191,569,459
effective HSP length: 121
effective length of query: 342
effective length of database: 126,275,923
effective search space: 43186365666
effective search space used: 43186365666
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)