Query 012466
Match_columns 463
No_of_seqs 132 out of 153
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 02:56:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012466.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012466hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12031 DUF3518: Domain of un 99.9 3.1E-26 6.8E-31 221.1 9.9 172 211-390 5-228 (257)
2 KOG2312 Predicted transcriptio 99.8 1.4E-20 3.1E-25 200.5 -0.4 160 216-390 13-173 (847)
3 PF05804 KAP: Kinesin-associat 98.2 9.4E-06 2E-10 90.9 11.3 223 218-449 144-443 (708)
4 PLN03200 cellulose synthase-in 97.7 0.0006 1.3E-08 83.6 16.1 215 215-452 507-728 (2102)
5 PF04826 Arm_2: Armadillo-like 97.7 0.00037 8E-09 69.5 11.5 175 253-445 25-200 (254)
6 PF05804 KAP: Kinesin-associat 97.6 0.00032 7E-09 78.8 11.5 182 216-418 269-450 (708)
7 PLN03200 cellulose synthase-in 97.5 0.0023 4.9E-08 78.8 16.2 209 216-448 466-681 (2102)
8 cd00020 ARM Armadillo/beta-cat 97.3 0.00084 1.8E-08 56.4 6.9 111 293-408 8-119 (120)
9 KOG0166 Karyopherin (importin) 96.9 0.013 2.7E-07 63.7 13.0 156 214-390 128-291 (514)
10 KOG4224 Armadillo repeat prote 96.6 0.013 2.9E-07 61.0 10.1 216 218-451 230-450 (550)
11 PF10508 Proteasom_PSMB: Prote 96.6 0.045 9.8E-07 59.6 14.6 157 217-390 98-255 (503)
12 PF10508 Proteasom_PSMB: Prote 96.4 0.04 8.7E-07 60.0 12.9 166 236-418 75-240 (503)
13 PF04826 Arm_2: Armadillo-like 96.1 0.11 2.4E-06 51.9 13.3 154 292-451 12-167 (254)
14 KOG0166 Karyopherin (importin) 95.8 0.12 2.5E-06 56.4 13.0 159 294-454 68-273 (514)
15 cd00020 ARM Armadillo/beta-cat 95.8 0.12 2.6E-06 43.1 10.5 108 336-446 8-119 (120)
16 KOG1048 Neural adherens juncti 94.9 0.24 5.3E-06 55.8 11.8 118 290-412 564-687 (717)
17 KOG1222 Kinesin associated pro 93.8 0.32 6.9E-06 52.6 9.4 163 255-436 277-444 (791)
18 KOG2122 Beta-catenin-binding p 93.4 0.39 8.6E-06 57.6 9.8 193 214-414 316-519 (2195)
19 KOG4224 Armadillo repeat prote 92.9 0.42 9.2E-06 50.2 8.3 204 216-442 105-314 (550)
20 KOG2122 Beta-catenin-binding p 92.6 0.58 1.2E-05 56.3 9.8 179 217-409 215-423 (2195)
21 PF12717 Cnd1: non-SMC mitotic 91.8 7.7 0.00017 36.2 14.9 167 255-447 2-176 (178)
22 COG5064 SRP1 Karyopherin (impo 91.8 0.79 1.7E-05 47.9 8.6 162 214-390 133-297 (526)
23 PF12755 Vac14_Fab1_bd: Vacuol 91.7 0.62 1.3E-05 39.9 6.7 92 311-409 5-96 (97)
24 PF01602 Adaptin_N: Adaptin N 91.5 1.5 3.3E-05 46.8 11.1 113 237-368 113-225 (526)
25 PF13646 HEAT_2: HEAT repeats; 91.5 1.1 2.4E-05 35.8 7.8 82 295-402 2-84 (88)
26 PRK09687 putative lyase; Provi 91.1 11 0.00024 38.1 16.1 99 237-359 53-152 (280)
27 KOG2171 Karyopherin (importin) 90.8 2.1 4.5E-05 50.4 11.7 131 216-367 104-238 (1075)
28 PF01602 Adaptin_N: Adaptin N 90.6 5.4 0.00012 42.7 14.2 131 252-409 90-221 (526)
29 PF03224 V-ATPase_H_N: V-ATPas 90.4 5.6 0.00012 40.4 13.4 204 223-440 85-307 (312)
30 COG5064 SRP1 Karyopherin (impo 89.6 8.1 0.00018 40.7 13.6 114 338-455 160-280 (526)
31 KOG1062 Vesicle coat complex A 89.4 7.5 0.00016 44.6 14.1 116 254-390 307-434 (866)
32 PF00514 Arm: Armadillo/beta-c 88.2 1.4 3E-05 31.0 5.2 34 374-409 8-41 (41)
33 PF13646 HEAT_2: HEAT repeats; 88.1 4 8.6E-05 32.6 8.5 85 241-359 2-87 (88)
34 PRK09687 putative lyase; Provi 87.4 14 0.0003 37.4 13.6 30 238-270 90-120 (280)
35 KOG1048 Neural adherens juncti 85.9 1.9 4.2E-05 48.9 7.1 117 336-455 234-357 (717)
36 PRK13800 putative oxidoreducta 85.4 31 0.00068 40.5 17.0 157 252-447 632-804 (897)
37 KOG4500 Rho/Rac GTPase guanine 85.3 8.7 0.00019 41.6 11.1 198 223-435 208-419 (604)
38 PF03224 V-ATPase_H_N: V-ATPas 85.3 6.5 0.00014 40.0 10.1 155 293-450 106-272 (312)
39 PRK13800 putative oxidoreducta 85.0 8.3 0.00018 45.1 12.1 131 252-407 725-865 (897)
40 PF12348 CLASP_N: CLASP N term 83.8 13 0.00027 35.5 10.9 147 239-407 54-204 (228)
41 KOG1060 Vesicle coat complex A 83.2 19 0.00041 41.6 13.1 122 255-404 371-513 (968)
42 KOG0946 ER-Golgi vesicle-tethe 82.2 6.8 0.00015 45.0 9.3 172 253-426 75-261 (970)
43 KOG4413 26S proteasome regulat 82.2 8.7 0.00019 40.3 9.4 184 217-413 193-384 (524)
44 COG5096 Vesicle coat complex, 80.8 63 0.0014 37.4 16.4 155 252-435 66-220 (757)
45 PF14664 RICTOR_N: Rapamycin-i 77.8 29 0.00062 36.7 11.9 115 309-432 85-200 (371)
46 PF05536 Neurochondrin: Neuroc 77.7 37 0.00081 37.7 13.3 155 292-452 5-173 (543)
47 PF10274 ParcG: Parkin co-regu 77.5 13 0.00028 35.7 8.4 82 291-373 37-118 (183)
48 KOG1062 Vesicle coat complex A 77.4 31 0.00066 39.9 12.4 119 254-390 265-397 (866)
49 KOG0946 ER-Golgi vesicle-tethe 76.1 25 0.00054 40.6 11.3 121 304-427 75-213 (970)
50 KOG2023 Nuclear transport rece 75.9 9.4 0.0002 43.2 7.8 141 300-446 571-750 (885)
51 KOG2973 Uncharacterized conser 74.8 28 0.00061 36.2 10.4 147 256-418 18-170 (353)
52 KOG1058 Vesicle coat complex C 74.7 1.6E+02 0.0035 34.3 17.0 226 208-455 150-414 (948)
53 PF12331 DUF3636: Protein of u 73.1 38 0.00083 31.5 10.0 96 294-390 32-148 (149)
54 PF08324 PUL: PUL domain; Int 72.7 15 0.00033 36.1 8.0 181 257-441 79-268 (268)
55 PF12348 CLASP_N: CLASP N term 70.1 58 0.0013 30.9 11.1 103 254-370 107-213 (228)
56 cd00256 VATPase_H VATPase_H, r 69.7 1.2E+02 0.0025 33.0 14.2 165 237-412 52-219 (429)
57 KOG1077 Vesicle coat complex A 69.2 58 0.0013 37.5 11.9 101 296-408 333-436 (938)
58 KOG2023 Nuclear transport rece 66.8 37 0.00079 38.7 9.8 139 292-430 128-306 (885)
59 KOG2171 Karyopherin (importin) 65.7 30 0.00065 41.2 9.4 113 293-410 349-462 (1075)
60 KOG4500 Rho/Rac GTPase guanine 64.9 51 0.0011 36.0 10.1 160 293-453 88-259 (604)
61 PF12755 Vac14_Fab1_bd: Vacuol 64.8 11 0.00024 32.2 4.4 66 291-359 26-91 (97)
62 smart00185 ARM Armadillo/beta- 63.6 14 0.0003 25.0 4.0 35 373-409 7-41 (41)
63 KOG2973 Uncharacterized conser 60.2 36 0.00079 35.4 7.8 104 337-449 5-113 (353)
64 KOG1222 Kinesin associated pro 60.1 25 0.00055 38.7 6.9 221 222-450 159-416 (791)
65 PF13513 HEAT_EZ: HEAT-like re 59.6 8.6 0.00019 28.4 2.5 51 309-361 4-54 (55)
66 smart00185 ARM Armadillo/beta- 59.1 13 0.00029 25.1 3.3 29 336-364 13-41 (41)
67 PF12717 Cnd1: non-SMC mitotic 58.9 62 0.0013 30.1 8.7 89 308-410 4-93 (178)
68 KOG1789 Endocytosis protein RM 58.1 66 0.0014 38.8 10.1 163 256-433 1740-1911(2235)
69 PF12460 MMS19_C: RNAPII trans 57.9 65 0.0014 34.2 9.7 152 216-386 259-414 (415)
70 PF00514 Arm: Armadillo/beta-c 57.5 18 0.00039 25.2 3.8 29 336-364 13-41 (41)
71 PTZ00429 beta-adaptin; Provisi 56.8 3.7E+02 0.0081 31.3 16.9 129 253-409 80-208 (746)
72 COG5240 SEC21 Vesicle coat com 55.2 1.8E+02 0.0039 33.1 12.4 133 256-419 428-561 (898)
73 KOG4199 Uncharacterized conser 53.7 71 0.0015 33.9 8.7 141 293-437 284-433 (461)
74 KOG2160 Armadillo/beta-catenin 51.4 1.2E+02 0.0027 31.8 10.1 153 223-391 110-266 (342)
75 PF12460 MMS19_C: RNAPII trans 50.6 25 0.00055 37.3 5.2 104 228-342 310-413 (415)
76 PF05268 GP38: Phage tail fibr 50.5 16 0.00035 36.0 3.3 19 23-41 177-195 (260)
77 PF05536 Neurochondrin: Neuroc 50.4 2.6E+02 0.0057 31.1 13.2 97 304-410 69-169 (543)
78 KOG1293 Proteins containing ar 48.8 1.7E+02 0.0038 33.3 11.3 76 293-369 462-538 (678)
79 KOG1058 Vesicle coat complex C 48.7 5.1E+02 0.011 30.4 15.2 92 349-447 220-328 (948)
80 PF02985 HEAT: HEAT repeat; I 48.3 30 0.00065 22.9 3.5 29 336-364 1-29 (31)
81 KOG0212 Uncharacterized conser 47.3 1.6E+02 0.0034 33.3 10.5 169 224-413 73-245 (675)
82 KOG4646 Uncharacterized conser 47.3 23 0.00049 33.0 3.6 94 290-386 56-149 (173)
83 KOG1248 Uncharacterized conser 47.0 1.5E+02 0.0032 35.9 10.8 127 253-386 750-877 (1176)
84 COG1413 FOG: HEAT repeat [Ener 45.7 2.8E+02 0.0061 27.9 11.8 64 237-323 73-137 (335)
85 PF13513 HEAT_EZ: HEAT-like re 45.4 90 0.0019 22.8 6.1 54 350-407 2-55 (55)
86 KOG1240 Protein kinase contain 45.3 43 0.00093 40.5 6.2 98 252-364 628-725 (1431)
87 PF06012 DUF908: Domain of Unk 44.1 47 0.001 34.3 5.8 56 305-365 1-56 (329)
88 KOG1242 Protein containing ada 44.0 56 0.0012 36.6 6.6 144 292-449 295-446 (569)
89 KOG1059 Vesicle coat complex A 43.7 4.3E+02 0.0094 30.8 13.3 149 252-426 310-460 (877)
90 PF12830 Nipped-B_C: Sister ch 42.8 67 0.0015 30.3 6.2 64 336-407 9-72 (187)
91 PF02985 HEAT: HEAT repeat; I 42.0 44 0.00095 22.1 3.5 28 294-321 2-29 (31)
92 KOG2025 Chromosome condensatio 42.0 1.4E+02 0.003 34.5 9.2 113 291-418 84-199 (892)
93 PTZ00429 beta-adaptin; Provisi 41.7 6.3E+02 0.014 29.5 17.0 94 253-366 117-210 (746)
94 KOG0168 Putative ubiquitin fus 40.8 75 0.0016 37.2 7.1 83 348-431 181-270 (1051)
95 PF10165 Ric8: Guanine nucleot 38.2 4.4E+02 0.0096 28.5 12.3 154 213-367 156-340 (446)
96 PF08389 Xpo1: Exportin 1-like 37.3 67 0.0015 27.8 5.0 68 236-316 80-148 (148)
97 PF14225 MOR2-PAG1_C: Cell mor 37.1 4.5E+02 0.0098 26.5 12.9 145 233-391 59-241 (262)
98 KOG1077 Vesicle coat complex A 37.0 7.5E+02 0.016 29.0 14.2 127 237-387 106-237 (938)
99 KOG2032 Uncharacterized conser 36.7 4.7E+02 0.01 29.1 12.0 117 235-365 252-372 (533)
100 PF07539 DRIM: Down-regulated 36.2 43 0.00094 30.6 3.7 31 334-364 16-46 (141)
101 KOG4413 26S proteasome regulat 35.6 5.4E+02 0.012 27.5 11.7 122 294-415 306-445 (524)
102 cd00256 VATPase_H VATPase_H, r 35.5 6.1E+02 0.013 27.6 13.9 179 254-446 114-307 (429)
103 PF08167 RIX1: rRNA processing 35.0 1.2E+02 0.0025 28.1 6.4 81 290-372 65-151 (165)
104 PF04063 DUF383: Domain of unk 33.3 1.2E+02 0.0025 29.2 6.3 77 344-420 4-98 (192)
105 COG5215 KAP95 Karyopherin (imp 32.1 8.3E+02 0.018 28.0 13.8 153 293-446 367-547 (858)
106 PRK10590 ATP-dependent RNA hel 32.1 61 0.0013 34.7 4.6 11 20-30 402-412 (456)
107 PF04063 DUF383: Domain of unk 31.7 2E+02 0.0044 27.6 7.6 84 336-421 53-144 (192)
108 PF12719 Cnd3: Nuclear condens 31.5 2.9E+02 0.0062 27.8 9.1 33 293-325 27-60 (298)
109 COG5218 YCG1 Chromosome conden 31.5 2E+02 0.0043 32.8 8.3 114 291-418 90-205 (885)
110 PF10165 Ric8: Guanine nucleot 31.3 2.6E+02 0.0056 30.2 9.2 111 302-414 42-173 (446)
111 KOG0301 Phospholipase A2-activ 31.3 5.2E+02 0.011 29.9 11.5 147 255-412 558-707 (745)
112 TIGR02270 conserved hypothetic 30.4 4.1E+02 0.009 28.5 10.4 57 293-361 87-143 (410)
113 COG5656 SXM1 Importin, protein 30.3 4.8E+02 0.01 30.7 11.1 171 256-442 475-662 (970)
114 KOG1967 DNA repair/transcripti 30.2 2.4E+02 0.0051 33.6 8.9 122 311-435 886-1010(1030)
115 PF11865 DUF3385: Domain of un 29.3 2.4E+02 0.0051 26.1 7.4 124 234-362 6-155 (160)
116 PRK10590 ATP-dependent RNA hel 27.8 71 0.0015 34.2 4.2 29 12-40 398-426 (456)
117 COG5369 Uncharacterized conser 27.3 2.5E+02 0.0054 31.7 8.0 131 256-387 469-617 (743)
118 PF10363 DUF2435: Protein of u 26.8 3.9E+02 0.0084 22.5 7.7 74 292-368 3-76 (92)
119 KOG1967 DNA repair/transcripti 25.7 4E+02 0.0087 31.8 9.7 116 231-361 902-1021(1030)
120 KOG1991 Nuclear transport rece 24.5 1.3E+03 0.028 27.9 13.5 170 257-442 478-663 (1010)
121 PF11698 V-ATPase_H_C: V-ATPas 23.7 2.7E+02 0.0059 24.9 6.4 71 335-408 43-114 (119)
122 KOG0168 Putative ubiquitin fus 23.4 4.3E+02 0.0093 31.4 9.3 118 256-390 270-392 (1051)
123 PF14663 RasGEF_N_2: Rapamycin 23.3 1.6E+02 0.0035 25.7 4.9 51 376-428 6-56 (115)
124 PF08958 DUF1871: Domain of un 23.0 77 0.0017 26.3 2.6 58 55-119 14-72 (79)
125 KOG4037 Photoreceptor synaptic 22.9 1.1E+02 0.0024 29.4 4.0 20 19-38 24-43 (240)
126 KOG2274 Predicted importin 9 [ 22.8 4.5E+02 0.0097 31.4 9.3 109 295-409 494-602 (1005)
127 PF14664 RICTOR_N: Rapamycin-i 22.5 9.3E+02 0.02 25.4 14.4 216 216-450 45-272 (371)
128 KOG1991 Nuclear transport rece 22.5 1.6E+02 0.0034 35.1 5.8 57 309-365 615-672 (1010)
129 PF13764 E3_UbLigase_R4: E3 ub 21.7 6.2E+02 0.013 29.8 10.4 170 216-392 142-333 (802)
130 TIGR02270 conserved hypothetic 21.5 1E+03 0.022 25.6 12.7 54 294-359 149-202 (410)
131 PF13251 DUF4042: Domain of un 21.5 2.3E+02 0.005 27.1 5.9 74 293-366 102-176 (182)
132 KOG1240 Protein kinase contain 21.3 3.3E+02 0.0071 33.5 8.1 92 241-346 425-518 (1431)
133 PF03542 Tuberin: Tuberin; In 20.8 2.5E+02 0.0055 29.6 6.5 131 214-366 164-305 (356)
134 PF08389 Xpo1: Exportin 1-like 20.7 64 0.0014 28.0 1.9 62 293-359 83-148 (148)
135 KOG1078 Vesicle coat complex C 20.5 8.1E+02 0.018 28.9 10.7 144 235-408 388-531 (865)
136 PF00790 VHS: VHS domain; Int 20.5 6.1E+02 0.013 22.6 8.4 86 336-422 43-131 (140)
137 KOG3915 Transcription regulato 20.1 1.4E+02 0.003 32.8 4.4 25 23-47 80-104 (641)
No 1
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=99.93 E-value=3.1e-26 Score=221.08 Aligned_cols=172 Identities=27% Similarity=0.333 Sum_probs=147.5
Q ss_pred HhhhhhhhhhhcCCCCCCcHHHHhhChhHHHHHHH---hhhccCC-----------Ch-----------------HHHHH
Q 012466 211 QCAVGASNIIRNFSFMPDNEVIMAQHRHCLETVFQ---CIEDHVT-----------ED-----------------EELVT 259 (463)
Q Consensus 211 r~a~eas~ILRNLSf~~~N~~~LA~~~~ll~lLl~---~l~~~~~-----------~d-----------------~eLr~ 259 (463)
+|++|++||||||||+|+|+..||+|++++.+|.+ .+|.|.. ++ ..||+
T Consensus 5 ~RclclSNIlR~LSFvpGnd~emskh~~lL~ilGrlLlL~h~h~~r~~~~~~~~~~e~~~~~~~~~~~~wwwd~l~~lRE 84 (257)
T PF12031_consen 5 RRCLCLSNILRGLSFVPGNDTEMSKHPGLLLILGRLLLLHHEHPERKQKPRTYDREEEEDESLSCSEAEWWWDCLEQLRE 84 (257)
T ss_pred HHHHHHHHHHhccCcCCCcHHHHhhChhHHHHHHHHHhcccCCcccccCCCCcchhhhhccccccchHHHHHHHHHHHhh
Confidence 34566999999999999999999999999999954 3455530 00 35999
Q ss_pred HHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCC---------------ChHHHHHHHHHHHhhcCCCC
Q 012466 260 NALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSP---------------FKAWHCAAAELLGRLIINPD 324 (463)
Q Consensus 260 ~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~---------------Dr~~~l~aLE~L~rLs~~~~ 324 (463)
++|++++|||+++||..|+++ |. .++++.|.++..|+ .-..+..|||+|+|||+.|+
T Consensus 85 nalV~laNisgqLdLs~~~e~------I~--~PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqrlaLEaLcKLsV~e~ 156 (257)
T PF12031_consen 85 NALVTLANISGQLDLSDYPES------IA--RPILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQRLALEALCKLSVIEN 156 (257)
T ss_pred cceEeeeeeeeeeecccCchH------HH--HHHHHHHHHHHhccchhccCCCCCCCCCCCCCHHHHHHHHHHHhheecc
Confidence 999999999999999998776 33 56888888887653 12467999999999999999
Q ss_pred CccccCCCchH-----HHHHHHHhcCCc-HHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhcCC
Q 012466 325 NEPFLLPFVPQ-----IHKRLVDLMSLP-AFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTP 390 (463)
Q Consensus 325 Ne~~ll~~~p~-----i~~rlv~lL~l~-D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~~~ 390 (463)
|+++|+...|- +|..++++|+.+ |..++|+++..|.+|+..++.+|+.||.++++|.+||+||+.+
T Consensus 157 NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a 228 (257)
T PF12031_consen 157 NVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDA 228 (257)
T ss_pred CcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHH
Confidence 99999977663 899999999985 6699999999999999999999999999999999999999876
No 2
>KOG2312 consensus Predicted transcriptional regulator, contains ARID domain [Transcription]
Probab=99.78 E-value=1.4e-20 Score=200.49 Aligned_cols=160 Identities=16% Similarity=0.133 Sum_probs=148.8
Q ss_pred hhhhhhcCCCCCCcHHHHhhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHH
Q 012466 216 ASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVE 295 (463)
Q Consensus 216 as~ILRNLSf~~~N~~~LA~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~ 295 (463)
+..|+|||||.++|.+.++++|++++||++|..+.|.. +.-.+||.++|+|.. ..-+++ ...+|.
T Consensus 13 ~~tv~r~LSf~~~n~~~~~~~~p~~~~lVm~a~~~ws~---~~Vqal~s~~nlaqp-----------t~~e~S-~~~~L~ 77 (847)
T KOG2312|consen 13 PPTVSRMLSFKRQNQQQHSPAPPPQQVLVMVAQPQWSQ---MQVQALQSNANLAQP-----------TSGESS-LIKQLL 77 (847)
T ss_pred cceeeeeeccchhhhcccCCCCChhheeeeecccccch---hhhHhhhhhcccCCc-----------chhhhh-HHHHHh
Confidence 58999999999999999999999999999999999975 999999999999961 112444 456899
Q ss_pred HHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCCchH-HHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhh
Q 012466 296 AIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQ-IHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLA 374 (463)
Q Consensus 296 tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~-i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia 374 (463)
++++++.|+||+.+++|||+|.+||..++|...|+.++.. .|.+++..|++.|++|+.++||+||+|+++|..+|..|+
T Consensus 78 t~t~Gi~S~drflimr~lEIl~~lcgrEgN~qvIc~~l~~d~y~~iv~~ltl~Dvllvi~Tle~LyalsemGdvac~~Is 157 (847)
T KOG2312|consen 78 TPTRGISSPDRFLIMRALEILPPLCGREGNPQVICQVLSNDAYGFIVQGLTLADVLLVIQTLEQLYALSEMGDVACVPIS 157 (847)
T ss_pred hhccCCCCCCceeEeeccccCcccccCCCCceeehhhhchHHHHHHHhccchhHeehhhhhhhHHhcccccCCccchhhh
Confidence 9999999999999999999999999999999999999987 999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHhhcCC
Q 012466 375 SERWAIDRLLRVIKTP 390 (463)
Q Consensus 375 ~~~~~V~~LV~Ll~~~ 390 (463)
..+++|++||++.+..
T Consensus 158 ~v~klidqLVsl~t~e 173 (847)
T KOG2312|consen 158 NVQKLIDQLVSLSTAE 173 (847)
T ss_pred hhhhhhhhhhccchhh
Confidence 9999999999998665
No 3
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.17 E-value=9.4e-06 Score=90.89 Aligned_cols=223 Identities=17% Similarity=0.229 Sum_probs=158.2
Q ss_pred hhhhcCCCCCCcHHHHhhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccc---------------------
Q 012466 218 NIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRI--------------------- 276 (463)
Q Consensus 218 ~ILRNLSf~~~N~~~LA~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~--------------------- 276 (463)
.-|=-|+-.|+|...|.+|.+++..|...+..-|....||-.+++-|+-+++.|-+...
T Consensus 144 ~~il~La~~~~NL~~l~~ne~l~~aL~RvLred~~ks~~l~tnI~~iF~~fS~f~~fH~~l~~~kiG~l~m~iie~Elkr 223 (708)
T PF05804_consen 144 SLILQLARNPENLEELVQNETLMSALARVLREDWKKSVELATNIIYIFFCFSNFSQFHPILAHYKIGSLCMEIIEHELKR 223 (708)
T ss_pred HHHHHHhCCcchHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 33445777899999999999999999999988775667788888888888877655310
Q ss_pred ------------------------cCCCcccc----------c--------ccc---------hhHHHHHHHHHhhCCCC
Q 012466 277 ------------------------FSSSKQSY----------I--------KIT---------REKRAVEAIMGILGSPF 305 (463)
Q Consensus 277 ------------------------~~~s~~~~----------l--------~i~---------~~~~ll~tL~~~L~S~D 305 (463)
|.+....+ + .++ ..+..+..|..+|.+.+
T Consensus 224 ~~~w~~~l~~~~~~~~~~~~~~~~~~~~~kk~~~l~~kQeqLlrv~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n 303 (708)
T PF05804_consen 224 HDLWQEELRKKKKAAEEKPEAKKDYEKELKKLQTLIRKQEQLLRVAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDREN 303 (708)
T ss_pred HHHHHHHHHhhhhhhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCC
Confidence 00000000 0 000 01225677788888888
Q ss_pred hHHHHHHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHH
Q 012466 306 KAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLR 385 (463)
Q Consensus 306 r~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~ 385 (463)
-...+.++.+|.|||....|...+... .++.+++.++..++.+++..+|.+||+||.-..- + .....-|+|..||.
T Consensus 304 ~ellil~v~fLkkLSi~~ENK~~m~~~--giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~-R-~~mV~~GlIPkLv~ 379 (708)
T PF05804_consen 304 EELLILAVTFLKKLSIFKENKDEMAES--GIVEKLLKLLPSENEDLVNVALRLLFNLSFDPEL-R-SQMVSLGLIPKLVE 379 (708)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHc--CCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHH-H-HHHHHCCCcHHHHH
Confidence 888999999999999999998766532 2888999999999999999999999999986553 3 34455679999999
Q ss_pred hhcCCCCChHHHHHHHHHHHHhhcCCCcchhHHhhHHHHHHH---Hh--ccchhHHHHHHHHHHHhcCC
Q 012466 386 VIKTPHPVPEVCRKAAMILESLVSEPQNRVLLLAYENAFAEI---LF--SDGRYSDTFARILYELTSRP 449 (463)
Q Consensus 386 Ll~~~~~~~em~rrAA~~L~~l~~~p~n~~~ll~~E~~l~~i---~~--sD~~~~~~~~~iL~~l~~~~ 449 (463)
|++.++ . ..-|-.+|.+|+..+++|+.|. |..-+..+ .+ +++++.....-.++-|+..+
T Consensus 380 LL~d~~--~--~~val~iLy~LS~dd~~r~~f~-~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~ 443 (708)
T PF05804_consen 380 LLKDPN--F--REVALKILYNLSMDDEARSMFA-YTDCIPQLMQMLLENSEEEVQLELIALLINLALNK 443 (708)
T ss_pred HhCCCc--h--HHHHHHHHHHhccCHhhHHHHh-hcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCH
Confidence 998652 2 1236788999999999999883 33333222 22 36666555566666665544
No 4
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=97.72 E-value=0.0006 Score=83.64 Aligned_cols=215 Identities=14% Similarity=0.158 Sum_probs=160.6
Q ss_pred hhhhhhhcCCCCCCcHHHHhhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHH
Q 012466 215 GASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAV 294 (463)
Q Consensus 215 eas~ILRNLSf~~~N~~~LA~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll 294 (463)
+++.+|=|++-.++|.+.+-....++..|+.++... +.+.++.++.++.|++..-+ ....
T Consensus 507 eAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sg---d~~~q~~Aa~AL~nLi~~~d-----------------~~~I 566 (2102)
T PLN03200 507 DSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNG---GPKGQEIAAKTLTKLVRTAD-----------------AATI 566 (2102)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCC---CHHHHHHHHHHHHHHHhccc-----------------hhHH
Confidence 467889999988888777665567777788887764 35789999999999974421 1233
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCC--chHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHH
Q 012466 295 EAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPF--VPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLK 372 (463)
Q Consensus 295 ~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~--~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ 372 (463)
..++.+|.+++...+..++++|+++...-+..+..... ...-++.++++|..++.+..+.+..+|++|+..+.+.|..
T Consensus 567 ~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~a 646 (2102)
T PLN03200 567 SQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCES 646 (2102)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHH
Confidence 55677788988888888999999985533332222211 1236789999999999999999999999999998888777
Q ss_pred hhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhc--CCCcchhHHhh--HHHHHH-HHhccchhHHHHHHHHHHHhc
Q 012466 373 LASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVS--EPQNRVLLLAY--ENAFAE-ILFSDGRYSDTFARILYELTS 447 (463)
Q Consensus 373 ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~--~p~n~~~ll~~--E~~l~~-i~~sD~~~~~~~~~iL~~l~~ 447 (463)
+... +.|..||.+|+.+ +.++-|.||..|.+|++ .++|+..++.. =..|.+ +...|..+.+.-+..|.-+.+
T Consensus 647 vv~a-gaIpPLV~LLss~--~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~ 723 (2102)
T PLN03200 647 LATD-EIINPCIKLLTNN--TEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLS 723 (2102)
T ss_pred HHHc-CCHHHHHHHHhcC--ChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHc
Confidence 5554 6899999999987 77889999999999996 33455555431 112333 334588999999999998888
Q ss_pred CCCcc
Q 012466 448 RPNNK 452 (463)
Q Consensus 448 ~~~~~ 452 (463)
.+..+
T Consensus 724 ~~e~~ 728 (2102)
T PLN03200 724 DPEVA 728 (2102)
T ss_pred CchHH
Confidence 88665
No 5
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=97.68 E-value=0.00037 Score=69.49 Aligned_cols=175 Identities=21% Similarity=0.202 Sum_probs=125.6
Q ss_pred ChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCC
Q 012466 253 EDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPF 332 (463)
Q Consensus 253 ~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~ 332 (463)
+|..+++.++-+++|.|.+- .++. .|. +--....+..+|.+++......|+.+|.+|+.+.+|...+..+
T Consensus 25 ~dp~i~e~al~al~n~aaf~------~nq~---~Ir-~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~ 94 (254)
T PF04826_consen 25 EDPFIQEKALIALGNSAAFP------FNQD---IIR-DLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMY 94 (254)
T ss_pred CChHHHHHHHHHHHhhccCh------hHHH---HHH-HcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHH
Confidence 45679999999999998652 1111 111 1225677788899999999999999999999999998777777
Q ss_pred chHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCC
Q 012466 333 VPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQ 412 (463)
Q Consensus 333 ~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~~p~ 412 (463)
++++.+.++.. --|.+++.+.|-.|.+||-.+. ....++ ..|..|++||+.| +...--.+-..|.+||+.|.
T Consensus 95 i~~Vc~~~~s~--~lns~~Q~agLrlL~nLtv~~~-~~~~l~---~~i~~ll~LL~~G--~~~~k~~vLk~L~nLS~np~ 166 (254)
T PF04826_consen 95 IPQVCEETVSS--PLNSEVQLAGLRLLTNLTVTND-YHHMLA---NYIPDLLSLLSSG--SEKTKVQVLKVLVNLSENPD 166 (254)
T ss_pred HHHHHHHHhcC--CCCCHHHHHHHHHHHccCCCcc-hhhhHH---hhHHHHHHHHHcC--ChHHHHHHHHHHHHhccCHH
Confidence 77776666542 1367889999999999986543 333343 3688999999998 44445567789999999999
Q ss_pred cchhHHhhHHHHHHHHhccch-hHHHHHHHHHHH
Q 012466 413 NRVLLLAYENAFAEILFSDGR-YSDTFARILYEL 445 (463)
Q Consensus 413 n~~~ll~~E~~l~~i~~sD~~-~~~~~~~iL~~l 445 (463)
+...++.-+-.---+.+.|.. -.+.+-++|.-.
T Consensus 167 ~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~ 200 (254)
T PF04826_consen 167 MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFF 200 (254)
T ss_pred HHHHHHhccchhHHHHHHccCCccHHHHHHHHHH
Confidence 999988876433334444443 455565655443
No 6
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=97.64 E-value=0.00032 Score=78.82 Aligned_cols=182 Identities=21% Similarity=0.301 Sum_probs=129.6
Q ss_pred hhhhhhcCCCCCCcHHHHhhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHH
Q 012466 216 ASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVE 295 (463)
Q Consensus 216 as~ILRNLSf~~~N~~~LA~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~ 295 (463)
++.+|=||+-.+.+...|. ++.++..|+.++... +.|+...++-.|.+++-+-+=. . .+. ...+..
T Consensus 269 ~~~lLlNLAed~~ve~kM~-~~~iV~~Lv~~Ldr~---n~ellil~v~fLkkLSi~~ENK------~---~m~-~~giV~ 334 (708)
T PF05804_consen 269 AFYLLLNLAEDPRVELKMV-NKGIVSLLVKCLDRE---NEELLILAVTFLKKLSIFKENK------D---EMA-ESGIVE 334 (708)
T ss_pred HHHHHHHHhcChHHHHHHH-hcCCHHHHHHHHcCC---CHHHHHHHHHHHHHHcCCHHHH------H---HHH-HcCCHH
Confidence 3678999999999999997 599999999998754 4679999999999999553311 1 222 334778
Q ss_pred HHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhhc
Q 012466 296 AIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLAS 375 (463)
Q Consensus 296 tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~ 375 (463)
.|..++.|.+...+..++++|.+||...++...+...- ++.+++.+|. |...+..|+-+||++|. +++++.+++.
T Consensus 335 kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~G--lIPkLv~LL~--d~~~~~val~iLy~LS~-dd~~r~~f~~ 409 (708)
T PF05804_consen 335 KLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLG--LIPKLVELLK--DPNFREVALKILYNLSM-DDEARSMFAY 409 (708)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCC--CcHHHHHHhC--CCchHHHHHHHHHHhcc-CHhhHHHHhh
Confidence 88999999988899999999999999998876554311 4556677775 44577889999999998 4456666665
Q ss_pred chhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCcchhHH
Q 012466 376 ERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLL 418 (463)
Q Consensus 376 ~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~~p~n~~~ll 418 (463)
. .+|..|+.++..+ +++++-.-+...+.|||.++.|-..+.
T Consensus 410 T-dcIp~L~~~Ll~~-~~~~v~~eliaL~iNLa~~~rnaqlm~ 450 (708)
T PF05804_consen 410 T-DCIPQLMQMLLEN-SEEEVQLELIALLINLALNKRNAQLMC 450 (708)
T ss_pred c-chHHHHHHHHHhC-CCccccHHHHHHHHHHhcCHHHHHHHH
Confidence 5 5899999988554 222222223444445555555544333
No 7
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=97.47 E-value=0.0023 Score=78.76 Aligned_cols=209 Identities=15% Similarity=0.121 Sum_probs=150.8
Q ss_pred hhhhhhcCCC-CCCcHHHHhhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHH
Q 012466 216 ASNIIRNFSF-MPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAV 294 (463)
Q Consensus 216 as~ILRNLSf-~~~N~~~LA~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll 294 (463)
+...|||++- .++|.+.+.+ ...+..|+.++... +.++++.+.-++.||+.+- .+.+. .+. ..-.+
T Consensus 466 A~~~L~nLa~~ndenr~aIie-aGaIP~LV~LL~s~---~~~iqeeAawAL~NLa~~~-------~qir~-iV~-~aGAI 532 (2102)
T PLN03200 466 AVALLAILTDEVDESKWAITA-AGGIPPLVQLLETG---SQKAKEDSATVLWNLCCHS-------EDIRA-CVE-SAGAV 532 (2102)
T ss_pred HHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHcCC---CHHHHHHHHHHHHHHhCCc-------HHHHH-HHH-HCCCH
Confidence 5678999985 5667777776 45677777777654 3479999999999999741 11111 111 11256
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccC--HHHHHH
Q 012466 295 EAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVN--VDCRLK 372 (463)
Q Consensus 295 ~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~--~~~~~~ 372 (463)
..|..+|.+.+.....-|+.+|++|+...+++ .+..++.+|..+|......+++.|-++..+. .+....
T Consensus 533 ppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~---------~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~ 603 (2102)
T PLN03200 533 PALLWLLKNGGPKGQEIAAKTLTKLVRTADAA---------TISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVRE 603 (2102)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhccchh---------HHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHH
Confidence 78888899888888899999999998876653 4467889999999999999999999887764 233333
Q ss_pred hhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcC-CCcchhHHh---hHHHHHHHHhccchhHHHHHHHHHHHhcC
Q 012466 373 LASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSE-PQNRVLLLA---YENAFAEILFSDGRYSDTFARILYELTSR 448 (463)
Q Consensus 373 ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~~-p~n~~~ll~---~E~~l~~i~~sD~~~~~~~~~iL~~l~~~ 448 (463)
.+...+.|+.|+.|++++ +.+.-+.|+.+|.++... +++...++- ....+..+.-.+.++....|..|-.+++.
T Consensus 604 g~~~~ggL~~Lv~LL~sg--s~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~ 681 (2102)
T PLN03200 604 GSAANDALRTLIQLLSSS--KEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRS 681 (2102)
T ss_pred hhhccccHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhC
Confidence 455678999999999987 677899999999999863 344444332 23333344445777888888888877753
No 8
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=97.27 E-value=0.00084 Score=56.42 Aligned_cols=111 Identities=23% Similarity=0.202 Sum_probs=87.4
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHhhcCC-CCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHH
Q 012466 293 AVEAIMGILGSPFKAWHCAAAELLGRLIIN-PDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRL 371 (463)
Q Consensus 293 ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~-~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~ 371 (463)
.++.|...+.+.+......++.+|++++.. +.+...+.. ..+++.++.+|..+|..++..++-+|++++..+.. ..
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~--~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~-~~ 84 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVE--AGGLPALVQLLKSEDEEVVKAALWALRNLAAGPED-NK 84 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHH--CCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHH-HH
Confidence 566777888888878889999999999988 333333321 13778888888889999999999999999997654 34
Q ss_pred HhhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhh
Q 012466 372 KLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLV 408 (463)
Q Consensus 372 ~ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~ 408 (463)
......+.+..|+.++... +.++.+.|..+|.+|+
T Consensus 85 ~~~~~~g~l~~l~~~l~~~--~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 85 LIVLEAGGVPKLVNLLDSS--NEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHCCChHHHHHHHhcC--CHHHHHHHHHHHHHhh
Confidence 5556778999999999877 5677888888888876
No 9
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.88 E-value=0.013 Score=63.71 Aligned_cols=156 Identities=16% Similarity=0.182 Sum_probs=114.6
Q ss_pred hhhhhhhhcCCCCC-CcHHHHhhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCc-cccccCCCcccccccchhH
Q 012466 214 VGASNIIRNFSFMP-DNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLL-DLRIFSSSKQSYIKITREK 291 (463)
Q Consensus 214 ~eas~ILRNLSf~~-~N~~~LA~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l-~L~~~~~s~~~~l~i~~~~ 291 (463)
.|++..|.|++-.- ++...... ...+.++..|+.++. ..+++.+.=.|+|||++- .++++ .+. .
T Consensus 128 ~eAAWaLTnIAsgtse~T~~vv~-agavp~fi~Ll~s~~---~~v~eQavWALgNIagds~~~Rd~--------vl~--~ 193 (514)
T KOG0166|consen 128 FEAAWALTNIASGTSEQTKVVVD-AGAVPIFIQLLSSPS---ADVREQAVWALGNIAGDSPDCRDY--------VLS--C 193 (514)
T ss_pred HHHHHHHHHHhcCchhhcccccc-CCchHHHHHHhcCCc---HHHHHHHHHHHhccccCChHHHHH--------HHh--h
Confidence 46788899987644 33344444 444445556666543 459999999999999873 22321 222 2
Q ss_pred HHHHHHHHhhCCCCh-HHHHHHHHHHHhhcCCCCCccccCCCch-----HHHHHHHHhcCCcHHHHHHHHHHHHHHhhcc
Q 012466 292 RAVEAIMGILGSPFK-AWHCAAAELLGRLIINPDNEPFLLPFVP-----QIHKRLVDLMSLPAFDAQAAAVGALYNLAEV 365 (463)
Q Consensus 292 ~ll~tL~~~L~S~Dr-~~~l~aLE~L~rLs~~~~Ne~~ll~~~p-----~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l 365 (463)
-++..|..++..+++ ..++.+.=+|++||...+ |.+| .++.-+..+|-..|.+.+.-+.=+|.+||..
T Consensus 194 g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~------P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg 267 (514)
T KOG0166|consen 194 GALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN------PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDG 267 (514)
T ss_pred cchHHHHHHhccccchHHHHHHHHHHHHHHcCCC------CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 377888888888887 678889999999999876 2222 2788888999999999999999999999988
Q ss_pred CHHHHHHhhcchhHHHHHHHhhcCC
Q 012466 366 NVDCRLKLASERWAIDRLLRVIKTP 390 (463)
Q Consensus 366 ~~~~~~~ia~~~~~V~~LV~Ll~~~ 390 (463)
+.+. ..+...-+.+.+||.+|.+.
T Consensus 268 ~ne~-iq~vi~~gvv~~LV~lL~~~ 291 (514)
T KOG0166|consen 268 SNEK-IQMVIDAGVVPRLVDLLGHS 291 (514)
T ss_pred ChHH-HHHHHHccchHHHHHHHcCC
Confidence 7655 56667788999999999776
No 10
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.60 E-value=0.013 Score=60.98 Aligned_cols=216 Identities=20% Similarity=0.201 Sum_probs=144.7
Q ss_pred hhhhcCCCCCCcHHHHhhC-hhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHH
Q 012466 218 NIIRNFSFMPDNEVIMAQH-RHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEA 296 (463)
Q Consensus 218 ~ILRNLSf~~~N~~~LA~~-~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~t 296 (463)
.-|-|....+.|-..||+. |+++.-|+.+.....+ ..+-.+=-.|.|||..-... ++|. +.-.+..
T Consensus 230 taisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~---kvkcqA~lALrnlasdt~Yq---------~eiv-~ag~lP~ 296 (550)
T KOG4224|consen 230 TAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSD---KVKCQAGLALRNLASDTEYQ---------REIV-EAGSLPL 296 (550)
T ss_pred HHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCCh---HHHHHHHHHHhhhcccchhh---------hHHH-hcCCchH
Confidence 3355667888899999965 6788888887776643 35555555667777442211 1222 2224556
Q ss_pred HHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHH-HHHHHHHHHHHhhccCHHHHHHhhc
Q 012466 297 IMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFD-AQAAAVGALYNLAEVNVDCRLKLAS 375 (463)
Q Consensus 297 L~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~-Ll~aaLe~LY~Lt~l~~~~~~~ia~ 375 (463)
+.++|.|+--..++...-|+.++++-+-|+.+|.+.- +++-+|++|.-.|.| ++..+++.|.+|+.-.+... +.-.
T Consensus 297 lv~Llqs~~~plilasVaCIrnisihplNe~lI~dag--fl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~-~~i~ 373 (550)
T KOG4224|consen 297 LVELLQSPMGPLILASVACIRNISIHPLNEVLIADAG--FLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNV-SVIR 373 (550)
T ss_pred HHHHHhCcchhHHHHHHHHHhhcccccCcccceeccc--chhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhh-HHHh
Confidence 6778888888899999999999999999998776421 677799999988775 99999999999999765543 3445
Q ss_pred chhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCcchhHHhhHHHHHHHHhc---cchhHHHHHHHHHHHhcCCCc
Q 012466 376 ERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLLAYENAFAEILFS---DGRYSDTFARILYELTSRPNN 451 (463)
Q Consensus 376 ~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~~p~n~~~ll~~E~~l~~i~~s---D~~~~~~~~~iL~~l~~~~~~ 451 (463)
..++|..|..|+-++ +.++-.+....+..|+-+..-|..|+-+---=..|-++ .++|.+--|--|.-++++-++
T Consensus 374 esgAi~kl~eL~lD~--pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~ 450 (550)
T KOG4224|consen 374 ESGAIPKLIELLLDG--PVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEH 450 (550)
T ss_pred hcCchHHHHHHHhcC--ChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHH
Confidence 678999999999888 33333444445555666666666654332111112222 445555556666666665543
No 11
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.56 E-value=0.045 Score=59.58 Aligned_cols=157 Identities=15% Similarity=0.185 Sum_probs=114.4
Q ss_pred hhhhhcCCCCCCcHHHHhhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHH
Q 012466 217 SNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEA 296 (463)
Q Consensus 217 s~ILRNLSf~~~N~~~LA~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~t 296 (463)
...|+++.-.++....+..+..++..++.|+... |.++.+.+..++.+|+.+-.--. .+- .......
T Consensus 98 l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~---d~~Va~~A~~~L~~l~~~~~~~~---------~l~-~~~~~~~ 164 (503)
T PF10508_consen 98 LKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDP---DLSVAKAAIKALKKLASHPEGLE---------QLF-DSNLLSK 164 (503)
T ss_pred HHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCC---cHHHHHHHHHHHHHHhCCchhHH---------HHh-CcchHHH
Confidence 4447777777777888888999999999999774 46799999999999996532110 010 0113566
Q ss_pred HHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCCchH-HHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhhc
Q 012466 297 IMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQ-IHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLAS 375 (463)
Q Consensus 297 L~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~-i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~ 375 (463)
|...+..++-...++++|++.+++..... .+.-+..+ +++.++..|.-.|+-++..++|.|++|+. ....+.-+ .
T Consensus 165 L~~l~~~~~~~vR~Rv~el~v~i~~~S~~--~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL-~ 240 (503)
T PF10508_consen 165 LKSLMSQSSDIVRCRVYELLVEIASHSPE--AAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYL-E 240 (503)
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHhcCHH--HHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHH-H
Confidence 77777675666788999999999866543 22222222 88899998888888999999999999999 44333334 4
Q ss_pred chhHHHHHHHhhcCC
Q 012466 376 ERWAIDRLLRVIKTP 390 (463)
Q Consensus 376 ~~~~V~~LV~Ll~~~ 390 (463)
..+.++.|+.++...
T Consensus 241 ~~gi~~~L~~~l~~~ 255 (503)
T PF10508_consen 241 QQGIFDKLSNLLQDS 255 (503)
T ss_pred hCCHHHHHHHHHhcc
Confidence 468999999999665
No 12
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.39 E-value=0.04 Score=59.97 Aligned_cols=166 Identities=16% Similarity=0.122 Sum_probs=119.8
Q ss_pred ChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHHH
Q 012466 236 HRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAEL 315 (463)
Q Consensus 236 ~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~ 315 (463)
.+....+|..+++.+. ..+|+.++-.+++++.+-+-. ..+..+..++..+..++.++|-...-.|..+
T Consensus 75 ~~~~~~~L~~gL~h~~---~~Vr~l~l~~l~~~~~~~~~~---------~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~ 142 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPS---PKVRRLALKQLGRIARHSEGA---------AQLLVDNELLPLIIQCLRDPDLSVAKAAIKA 142 (503)
T ss_pred HHHHHHHHHHHhcCCC---HHHHHHHHHHHHHHhcCCHHH---------HHHhcCccHHHHHHHHHcCCcHHHHHHHHHH
Confidence 4667778888887543 469999999999998664321 1111135588999999999999999999999
Q ss_pred HHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhcCCCCChH
Q 012466 316 LGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPE 395 (463)
Q Consensus 316 L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~~~~~~~e 395 (463)
|.+|+..+.+-+.+.+ +.....+..++.-++...+.-+++++.++++.+++... .+...|.++.+++.+... ..=
T Consensus 143 L~~l~~~~~~~~~l~~--~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~-~~~~sgll~~ll~eL~~d--DiL 217 (503)
T PF10508_consen 143 LKKLASHPEGLEQLFD--SNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAE-AVVNSGLLDLLLKELDSD--DIL 217 (503)
T ss_pred HHHHhCCchhHHHHhC--cchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHH-HHHhccHHHHHHHHhcCc--cHH
Confidence 9999987655332221 12477888888877888899999999999999988754 455578999999988775 221
Q ss_pred HHHHHHHHHHHhhcCCCcchhHH
Q 012466 396 VCRKAAMILESLVSEPQNRVLLL 418 (463)
Q Consensus 396 m~rrAA~~L~~l~~~p~n~~~ll 418 (463)
+-.-|..+|..|+..|.+..++.
T Consensus 218 vqlnalell~~La~~~~g~~yL~ 240 (503)
T PF10508_consen 218 VQLNALELLSELAETPHGLQYLE 240 (503)
T ss_pred HHHHHHHHHHHHHcChhHHHHHH
Confidence 22345556666666666655553
No 13
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=96.09 E-value=0.11 Score=51.86 Aligned_cols=154 Identities=16% Similarity=0.153 Sum_probs=122.0
Q ss_pred HHHHHHHHhhC-CCChHHHHHHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHH
Q 012466 292 RAVEAIMGILG-SPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCR 370 (463)
Q Consensus 292 ~ll~tL~~~L~-S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~ 370 (463)
.-|+.|..+|. +.|-..+..++-++++.+....|.+.+.+.- .+.-+..+|..++..+++.+|.+|.+++.-.+..
T Consensus 12 ~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~G--gi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~- 88 (254)
T PF04826_consen 12 QELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLG--GISLIGSLLNDPNPSVREKALNALNNLSVNDENQ- 88 (254)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcC--CHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH-
Confidence 35688888887 4578889999999999999888876665422 5677888999999999999999999997765433
Q ss_pred HHhhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCcchhHHhhHHHHHHHHhc-cchhHHHHHHHHHHHhcCC
Q 012466 371 LKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLLAYENAFAEILFS-DGRYSDTFARILYELTSRP 449 (463)
Q Consensus 371 ~~ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~~p~n~~~ll~~E~~l~~i~~s-D~~~~~~~~~iL~~l~~~~ 449 (463)
.+| +-.|.++++.+...+-++++=.-+-..|-+|+-.++++.++..+=..|+.+-.+ +.++-...-++|+-||.+|
T Consensus 89 ~~I---k~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np 165 (254)
T PF04826_consen 89 EQI---KMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENP 165 (254)
T ss_pred HHH---HHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCH
Confidence 444 236888888876665567665667788999999999999998887778775554 7777788999999999988
Q ss_pred Cc
Q 012466 450 NN 451 (463)
Q Consensus 450 ~~ 451 (463)
..
T Consensus 166 ~~ 167 (254)
T PF04826_consen 166 DM 167 (254)
T ss_pred HH
Confidence 64
No 14
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.84 E-value=0.12 Score=56.39 Aligned_cols=159 Identities=19% Similarity=0.202 Sum_probs=122.8
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCCchH-HHHHHHHhcCCcH-HHHHHHHHHHHHHhhccCHHHHH
Q 012466 294 VEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQ-IHKRLVDLMSLPA-FDAQAAAVGALYNLAEVNVDCRL 371 (463)
Q Consensus 294 l~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~-i~~rlv~lL~l~D-~~Ll~aaLe~LY~Lt~l~~~~~~ 371 (463)
...+...+.|.|......+...+.||-.++.| +-+-..+-. ++.++|+.|.-.+ ..++..+--+|-++++...+- .
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~-ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~-T 145 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERN-PPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQ-T 145 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCC-CCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhh-c
Confidence 45566788999999999999999999999998 333333322 8899999998544 788888888889998887543 4
Q ss_pred HhhcchhHHHHHHHhhcCCCC---------------------------------------Ch--HHHHHHHHHHHHhhcC
Q 012466 372 KLASERWAIDRLLRVIKTPHP---------------------------------------VP--EVCRKAAMILESLVSE 410 (463)
Q Consensus 372 ~ia~~~~~V~~LV~Ll~~~~~---------------------------------------~~--em~rrAA~~L~~l~~~ 410 (463)
+..-..++|..++.|+.++|. +. -|.|-|+=+|.+|+++
T Consensus 146 ~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrg 225 (514)
T KOG0166|consen 146 KVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRG 225 (514)
T ss_pred cccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcC
Confidence 667778899999999977621 11 2889999999999999
Q ss_pred CCcchhHHhhHHHHHHHHh----ccchhHHHHHHHHHHHhcCCCcccc
Q 012466 411 PQNRVLLLAYENAFAEILF----SDGRYSDTFARILYELTSRPNNKVA 454 (463)
Q Consensus 411 p~n~~~ll~~E~~l~~i~~----sD~~~~~~~~~iL~~l~~~~~~~~~ 454 (463)
..=.|.|-..+..|--|+- +|+.|..-.+-.|-+|+-+++-|..
T Consensus 226 k~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq 273 (514)
T KOG0166|consen 226 KNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQ 273 (514)
T ss_pred CCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHH
Confidence 9877777666666555443 5999987777788888888887643
No 15
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=95.81 E-value=0.12 Score=43.12 Aligned_cols=108 Identities=24% Similarity=0.233 Sum_probs=80.4
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCcch
Q 012466 336 IHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRV 415 (463)
Q Consensus 336 i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~~p~n~~ 415 (463)
+++.++++|.-++..++..++.+|-+++...+..+..+.. .+.+..|+.++.+. ++++.+.|+.+|.+|+..+....
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~~i~~l~~~l~~~--~~~v~~~a~~~L~~l~~~~~~~~ 84 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVE-AGGLPALVQLLKSE--DEEVVKAALWALRNLAAGPEDNK 84 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHH-CCChHHHHHHHhCC--CHHHHHHHHHHHHHHccCcHHHH
Confidence 5677888888888899999999999999987766666554 58999999999875 78889999999999999885433
Q ss_pred h-HHhh--HHHHHHHHh-ccchhHHHHHHHHHHHh
Q 012466 416 L-LLAY--ENAFAEILF-SDGRYSDTFARILYELT 446 (463)
Q Consensus 416 ~-ll~~--E~~l~~i~~-sD~~~~~~~~~iL~~l~ 446 (463)
. +... -..|..+.- .|.++......+|..|.
T Consensus 85 ~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 85 LIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 3 3321 333433322 26677777777766553
No 16
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=94.87 E-value=0.24 Score=55.80 Aligned_cols=118 Identities=19% Similarity=0.150 Sum_probs=87.3
Q ss_pred hHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcCC------cHHHHHHHHHHHHHHhh
Q 012466 290 EKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSL------PAFDAQAAAVGALYNLA 363 (463)
Q Consensus 290 ~~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l------~D~~Ll~aaLe~LY~Lt 363 (463)
....+..|..+|...|..++..+.-+|.+|+....|.+.|-. ..+..+|+.|+- .++|.+.+++-.|.++.
T Consensus 564 kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk---~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv 640 (717)
T KOG1048|consen 564 KEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGK---YAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIV 640 (717)
T ss_pred hccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhc---chHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHH
Confidence 344567888999999999999999999999999999887773 255666666663 35678888888888888
Q ss_pred ccCHHHHHHhhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCC
Q 012466 364 EVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQ 412 (463)
Q Consensus 364 ~l~~~~~~~ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~~p~ 412 (463)
.-+...+.. ...-+-+..|+.+....| .++.+|-|+.-|..|=..-+
T Consensus 641 ~~~~~nAkd-l~~~~g~~kL~~I~~s~~-S~k~~kaAs~vL~~lW~y~e 687 (717)
T KOG1048|consen 641 RKNVLNAKD-LLEIKGIPKLRLISKSQH-SPKEFKAASSVLDVLWQYKE 687 (717)
T ss_pred HHhHHHHHH-HHhccChHHHHHHhcccC-CHHHHHHHHHHHHHHHHHHH
Confidence 766555433 344556888888887743 66778878777777654433
No 17
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.84 E-value=0.32 Score=52.64 Aligned_cols=163 Identities=17% Similarity=0.164 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCCch
Q 012466 255 EELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVP 334 (463)
Q Consensus 255 ~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p 334 (463)
+.|..-++..|-|+|..+-+.. .+- .+.+++.|..+|....-.........|-||++-++|...+...
T Consensus 277 eqLLrva~ylLlNlAed~~~El---------KMr-rkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~~-- 344 (791)
T KOG1222|consen 277 EQLLRVAVYLLLNLAEDISVEL---------KMR-RKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQN-- 344 (791)
T ss_pred HHHHHHHHHHHHHHhhhhhHHH---------HHH-HHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHhc--
Confidence 3577788889999997654431 122 4668899999998777788889999999999999997544321
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhcCC-CCChHHHHHHHHHHHHhhcCCCc
Q 012466 335 QIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTP-HPVPEVCRKAAMILESLVSEPQN 413 (463)
Q Consensus 335 ~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~~~-~~~~em~rrAA~~L~~l~~~p~n 413 (463)
.+.++++.+.+..+.+++-++|..|++||.=+- .+.+ +-.-|.+.+|+.||-.. |+.- |...|-.|+....-
T Consensus 345 ~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~g-lr~K-Mv~~GllP~l~~ll~~d~~~~i-----A~~~lYh~S~dD~~ 417 (791)
T KOG1222|consen 345 GIVEKLLKLFPIQHPDLRKATLMLLFNLSFDSG-LRPK-MVNGGLLPHLASLLDSDTKHGI-----ALNMLYHLSCDDDA 417 (791)
T ss_pred cHHHHHHHhcCCCCHHHHHHHHHHhhhcccccc-ccHH-HhhccchHHHHHHhCCcccchh-----hhhhhhhhccCcHH
Confidence 289999999999999999999999999998532 2222 23467899999999554 3233 55667888888888
Q ss_pred chhHHhhHHHHHH----HHhccchhHH
Q 012466 414 RVLLLAYENAFAE----ILFSDGRYSD 436 (463)
Q Consensus 414 ~~~ll~~E~~l~~----i~~sD~~~~~ 436 (463)
+++|..-+---+. +.-++.+|.-
T Consensus 418 K~MfayTdci~~lmk~v~~~~~~~vdl 444 (791)
T KOG1222|consen 418 KAMFAYTDCIKLLMKDVLSGTGSEVDL 444 (791)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCceecH
Confidence 8887544432221 2234666653
No 18
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=93.35 E-value=0.39 Score=57.58 Aligned_cols=193 Identities=17% Similarity=0.083 Sum_probs=118.4
Q ss_pred hhhhhhhhcCCCCCCcHHHHhhChhHHHHHHHhh---hccC--C---ChHHHHHHHHHHHHhhCCCccccccCCCccccc
Q 012466 214 VGASNIIRNFSFMPDNEVIMAQHRHCLETVFQCI---EDHV--T---EDEELVTNALETIVNLAPLLDLRIFSSSKQSYI 285 (463)
Q Consensus 214 ~eas~ILRNLSf~~~N~~~LA~~~~ll~lLl~~l---~~~~--~---~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l 285 (463)
|+|...|=-+||-+|--+.|-.--.+--+--+++ ..|- . +...||.|++=.|.|+. |-|.. +..++
T Consensus 316 caA~~~lMK~SFDEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLT-FGDv~-----NKa~L 389 (2195)
T KOG2122|consen 316 CAALCTLMKLSFDEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLT-FGDVA-----NKATL 389 (2195)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccc-ccccc-----chhhh
Confidence 4578888899999998887776433332222111 1221 2 23469999999999998 22222 22222
Q ss_pred ccchhHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCC-CCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhc
Q 012466 286 KITREKRAVEAIMGILGSPFKAWHCAAAELLGRLIIN-PDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAE 364 (463)
Q Consensus 286 ~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~-~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~ 364 (463)
+- .+-+.+.|..+|.+....++.--.-+|.+|+=+ |.|-.-++.-+..+-.-+.--|-...+--+-++|-+|.+|+.
T Consensus 390 Cs--~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSA 467 (2195)
T KOG2122|consen 390 CS--QRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSA 467 (2195)
T ss_pred hh--hhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhh
Confidence 21 455778888888766544433333456777755 444332322221211111111122344556889999999999
Q ss_pred cCHHHHHHhhcchhHHHHHHHhhcCCCCC--hHHHHHHHHHHHHhhcCCCcc
Q 012466 365 VNVDCRLKLASERWAIDRLLRVIKTPHPV--PEVCRKAAMILESLVSEPQNR 414 (463)
Q Consensus 365 l~~~~~~~ia~~~~~V~~LV~Ll~~~~~~--~em~rrAA~~L~~l~~~p~n~ 414 (463)
--.+.+..||.+.|++.-||.+|+...+. -.+.--|-.+|-|.+++=.|.
T Consensus 468 HcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~ 519 (2195)
T KOG2122|consen 468 HCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATC 519 (2195)
T ss_pred cccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhcc
Confidence 98888889999999999999999987542 235555677777766655443
No 19
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.85 E-value=0.42 Score=50.21 Aligned_cols=204 Identities=21% Similarity=0.173 Sum_probs=145.2
Q ss_pred hhhhhhcCCCCCCcHHHHhhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHH
Q 012466 216 ASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVE 295 (463)
Q Consensus 216 as~ILRNLSf~~~N~~~LA~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~ 295 (463)
+.--+-||...-+|-..+++--++-.++.+....+ +|++-++.-.+.|++.+=+.. ..|. ..-.+.
T Consensus 105 a~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~----vevqcnaVgCitnLaT~d~nk---------~kiA-~sGaL~ 170 (550)
T KOG4224|consen 105 AGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDG----VEVQCNAVGCITNLATFDSNK---------VKIA-RSGALE 170 (550)
T ss_pred hhhhhccceeccCCceEEEeccChHHHHHHhcCCC----cEEEeeehhhhhhhhccccch---------hhhh-hccchh
Confidence 34457899999999999998777666666665555 357778888888888762222 1222 112577
Q ss_pred HHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhh-
Q 012466 296 AIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLA- 374 (463)
Q Consensus 296 tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia- 374 (463)
.++++-.+.|-..+.-++++|..+.....|...+...- -+.-+|.+|...|.+.+.+|--.+.+++ ++...+.+++
T Consensus 171 pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG--~lpvLVsll~s~d~dvqyycttaisnIa-Vd~~~Rk~Laq 247 (550)
T KOG4224|consen 171 PLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAG--GLPVLVSLLKSGDLDVQYYCTTAISNIA-VDRRARKILAQ 247 (550)
T ss_pred hhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccC--CchhhhhhhccCChhHHHHHHHHhhhhh-hhHHHHHHHHh
Confidence 78887789999999999999999999999987766421 3446789999999999999988876654 3455555555
Q ss_pred cchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCcchhH-----HhhHHHHHHHHhccchhHHHHHHHH
Q 012466 375 SERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLL-----LAYENAFAEILFSDGRYSDTFARIL 442 (463)
Q Consensus 375 ~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~~p~n~~~l-----l~~E~~l~~i~~sD~~~~~~~~~iL 442 (463)
..|+.|..||.|.-++ .+.+-..|+..|-+|++.-+=.-.+ +|+=-+|+ .|+..-++.+.|-
T Consensus 248 aep~lv~~Lv~Lmd~~--s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Ll----qs~~~plilasVa 314 (550)
T KOG4224|consen 248 AEPKLVPALVDLMDDG--SDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELL----QSPMGPLILASVA 314 (550)
T ss_pred cccchHHHHHHHHhCC--ChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHH----hCcchhHHHHHHH
Confidence 5678999999999888 5667788999999999875322111 33333333 4565556665553
No 20
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=92.65 E-value=0.58 Score=56.28 Aligned_cols=179 Identities=20% Similarity=0.175 Sum_probs=120.8
Q ss_pred hhhhhcCCCCCCcHHHHhhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHH--
Q 012466 217 SNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAV-- 294 (463)
Q Consensus 217 s~ILRNLSf~~~N~~~LA~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll-- 294 (463)
+..++-||-.|+--..|-+ ..|+.||++++|..++++.+-|.++=..|.||-..=. +..+.- .+..++
T Consensus 215 ar~fLemSss~esCaamR~-SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqP------D~kr~R---RE~kvL~l 284 (2195)
T KOG2122|consen 215 ARTFLEMSSSPESCAAMRR-SGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQP------DEKRGR---REKKVLHL 284 (2195)
T ss_pred HHHHHHhccCchhhHHHHh-ccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCc------chhhhH---HHHHHHHH
Confidence 5557888888888888876 7899999999999988888999999999999863210 000000 011122
Q ss_pred --------HHHHHhhC--------CCChHHHHHHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcC---------CcHH
Q 012466 295 --------EAIMGILG--------SPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMS---------LPAF 349 (463)
Q Consensus 295 --------~tL~~~L~--------S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~---------l~D~ 349 (463)
.++..++. -+|+-.++.|+-+|=|++--|.-...+++.- .++-|.+||. .+|.
T Consensus 285 LeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SFDEEhR~aM~ELG--~LqAIaeLl~vDh~mhgp~tnd~ 362 (2195)
T KOG2122|consen 285 LEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSFDEEHRHAMNELG--GLQAIAELLQVDHEMHGPETNDG 362 (2195)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhccHHHHHHHHHhh--hHHHHHHHHHHHHHhcCCCCCcH
Confidence 23333443 2456667899999999887765443333210 2223333222 2443
Q ss_pred ---HHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhc
Q 012466 350 ---DAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVS 409 (463)
Q Consensus 350 ---~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~ 409 (463)
-|+-+++++|-+||..+...+..+|.+++++.-+|+-|... ..|+.---|..|.||+=
T Consensus 363 ~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~--peeL~QV~AsvLRNLSW 423 (2195)
T KOG2122|consen 363 ECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISA--PEELLQVYASVLRNLSW 423 (2195)
T ss_pred HHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcC--hHHHHHHHHHHHHhccc
Confidence 68899999999999999888889999999999999998766 23344445556666653
No 21
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=91.84 E-value=7.7 Score=36.22 Aligned_cols=167 Identities=16% Similarity=0.137 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCCch
Q 012466 255 EELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVP 334 (463)
Q Consensus 255 ~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p 334 (463)
..+|.+++.+++-++-... .+ -++....+..+|.+++-.+...|+-+|++|..++- ..+-+
T Consensus 2 ~~vR~n~i~~l~DL~~r~~------------~~--ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~-----ik~k~ 62 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYP------------NL--VEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM-----IKVKG 62 (178)
T ss_pred HHHHHHHHHHHHHHHHhCc------------HH--HHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-----eeehh
Confidence 4689999999988773321 12 25677889999999999999999999999976532 23446
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHhhcc-CHHHHHHhhcchhHHHHHHHhhcC-CCC-----ChHHHHHHHHHHH-H
Q 012466 335 QIHKRLVDLMSLPAFDAQAAAVGALYNLAEV-NVDCRLKLASERWAIDRLLRVIKT-PHP-----VPEVCRKAAMILE-S 406 (463)
Q Consensus 335 ~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l-~~~~~~~ia~~~~~V~~LV~Ll~~-~~~-----~~em~rrAA~~L~-~ 406 (463)
+++.+++..|.-+|.+++..+..|+..+..- +... + ....++-+..|-.. +|+ +.+--++-...|. .
T Consensus 63 ~l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~---i--~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~ 137 (178)
T PF12717_consen 63 QLFSRILKLLVDENPEIRSLARSFFSELLKKRNPNI---I--YNNFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDF 137 (178)
T ss_pred hhhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchH---H--HHHHHHHHHHHhCccccccccccCHHHHHHHHHHHHHH
Confidence 6778888899889999999999999999886 3222 1 12233333333322 132 2333334444444 4
Q ss_pred hhcCCCcchhHHhhHHHHHHHHhccchhHHHHHHHHHHHhc
Q 012466 407 LVSEPQNRVLLLAYENAFAEILFSDGRYSDTFARILYELTS 447 (463)
Q Consensus 407 l~~~p~n~~~ll~~E~~l~~i~~sD~~~~~~~~~iL~~l~~ 447 (463)
+.+..++-+.+-.+=++++.-.+ ......|.+++|=|+.
T Consensus 138 i~~d~~~~~l~~kl~~~~~~~~~--~~~~~~~~d~~~~l~~ 176 (178)
T PF12717_consen 138 IDKDKQKESLVEKLCQRFLNAVV--DEDERVLRDILYCLSC 176 (178)
T ss_pred cCcHHHHHHHHHHHHHHHHHHcc--cccHHHHHHHHHHHHC
Confidence 44455565555555555554333 3445566666665553
No 22
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=91.81 E-value=0.79 Score=47.91 Aligned_cols=162 Identities=15% Similarity=0.105 Sum_probs=106.6
Q ss_pred hhhhhhhhcCCCCCCcHHHHhhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCcc-ccccCCCcccccccchhHH
Q 012466 214 VGASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLD-LRIFSSSKQSYIKITREKR 292 (463)
Q Consensus 214 ~eas~ILRNLSf~~~N~~~LA~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~-L~~~~~s~~~~l~i~~~~~ 292 (463)
.|++..|-|.+-=-.+.....-.-..+.+++..+... ..++|+.+.=.|+|||+.-. .++ +.+ +--
T Consensus 133 fEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~---~~~V~eQavWALGNiAGDS~~~RD--------~vL--~~g 199 (526)
T COG5064 133 FEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSST---EDDVREQAVWALGNIAGDSEGCRD--------YVL--QCG 199 (526)
T ss_pred HHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCc---hHHHHHHHHHHhccccCCchhHHH--------HHH--hcC
Confidence 3677777777665555544444444455555555544 34699999999999997632 111 111 222
Q ss_pred HHHHHHHhhCCCCh--HHHHHHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHH
Q 012466 293 AVEAIMGILGSPFK--AWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCR 370 (463)
Q Consensus 293 ll~tL~~~L~S~Dr--~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~ 370 (463)
.+++|++++.|+-+ ..++.+-=+|++||....--+- -..+.+.+.-+..|+-..|.|.+.-+.=++..|+...+++
T Consensus 200 aleplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~-w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~- 277 (526)
T COG5064 200 ALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPD-WSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEK- 277 (526)
T ss_pred chHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCc-hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHH-
Confidence 78889998888776 7788888999999987542100 0112235555666777789888776666777777776655
Q ss_pred HHhhcchhHHHHHHHhhcCC
Q 012466 371 LKLASERWAIDRLLRVIKTP 390 (463)
Q Consensus 371 ~~ia~~~~~V~~LV~Ll~~~ 390 (463)
..+.-.-|.-.+||.+|+++
T Consensus 278 i~avld~g~~~RLvElLs~~ 297 (526)
T COG5064 278 IQAVLDVGIPGRLVELLSHE 297 (526)
T ss_pred HHHHHhcCCcHHHHHHhcCc
Confidence 44555667888999999887
No 23
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=91.74 E-value=0.62 Score=39.89 Aligned_cols=92 Identities=20% Similarity=0.212 Sum_probs=67.0
Q ss_pred HHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhcCC
Q 012466 311 AAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTP 390 (463)
Q Consensus 311 ~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~~~ 390 (463)
++|=+|+..++.-... +.++++.+++-++..+.-+|.-++-++.|+||+++..-... .+-+-+...+.|.+++.+.
T Consensus 5 ggli~Laa~ai~l~~~--~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~--~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 5 GGLIGLAAVAIALGKD--ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGE--ILPYFNEIFDALCKLSADP 80 (97)
T ss_pred HHHHHHHHHHHHchHh--HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCC
Confidence 3444555555544432 55666678888889999999999999999999999874332 1235566788899999887
Q ss_pred CCChHHHHHHHHHHHHhhc
Q 012466 391 HPVPEVCRKAAMILESLVS 409 (463)
Q Consensus 391 ~~~~em~rrAA~~L~~l~~ 409 (463)
+++ +|.+|..|-+|-|
T Consensus 81 d~~---Vr~~a~~Ld~llk 96 (97)
T PF12755_consen 81 DEN---VRSAAELLDRLLK 96 (97)
T ss_pred chh---HHHHHHHHHHHhc
Confidence 544 6889999887755
No 24
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=91.52 E-value=1.5 Score=46.82 Aligned_cols=113 Identities=15% Similarity=0.155 Sum_probs=80.0
Q ss_pred hhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHHHH
Q 012466 237 RHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELL 316 (463)
Q Consensus 237 ~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~L 316 (463)
+.+...+..++... +.-+|+.|+-.+..+...- + +. +. .. +++.|..+|.+.|......|+.++
T Consensus 113 ~~l~~~v~~ll~~~---~~~VRk~A~~~l~~i~~~~----p-~~------~~-~~-~~~~l~~lL~d~~~~V~~~a~~~l 176 (526)
T PF01602_consen 113 EPLIPDVIKLLSDP---SPYVRKKAALALLKIYRKD----P-DL------VE-DE-LIPKLKQLLSDKDPSVVSAALSLL 176 (526)
T ss_dssp HHHHHHHHHHHHSS---SHHHHHHHHHHHHHHHHHC----H-CC------HH-GG-HHHHHHHHTTHSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHhcCC---chHHHHHHHHHHHHHhccC----H-HH------HH-HH-HHHHHhhhccCCcchhHHHHHHHH
Confidence 44555566666543 3469999998888887441 0 01 11 12 678888899889989999999999
Q ss_pred HhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHH
Q 012466 317 GRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVD 368 (463)
Q Consensus 317 ~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~ 368 (463)
..+ ..|.+...+.++++++++.+++..++.-++..++.+|..++.....
T Consensus 177 ~~i---~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~ 225 (526)
T PF01602_consen 177 SEI---KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPE 225 (526)
T ss_dssp HHH---HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHH
T ss_pred HHH---ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChh
Confidence 999 4444443467778888888888888888888888888877776543
No 25
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=91.50 E-value=1.1 Score=35.84 Aligned_cols=82 Identities=28% Similarity=0.321 Sum_probs=61.8
Q ss_pred HHHHHhh-CCCChHHHHHHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHh
Q 012466 295 EAIMGIL-GSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKL 373 (463)
Q Consensus 295 ~tL~~~L-~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~i 373 (463)
+.|...| .+++......++++|+++. .++++..+++++..+|..++..++..|.++-
T Consensus 2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~------------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 2 PALLQLLQNDPDPQVRAEAARALGELG------------DPEAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHCCT------------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcC------------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 4566666 7888888899999999441 2358889999999999999999999988772
Q ss_pred hcchhHHHHHHHhhcCCCCChHHHHHHHH
Q 012466 374 ASERWAIDRLLRVIKTPHPVPEVCRKAAM 402 (463)
Q Consensus 374 a~~~~~V~~LV~Ll~~~~~~~em~rrAA~ 402 (463)
.+.+++.|+.++... +.+.+|++|.
T Consensus 60 --~~~~~~~L~~~l~~~--~~~~vr~~a~ 84 (88)
T PF13646_consen 60 --DPEAIPALIKLLQDD--DDEVVREAAA 84 (88)
T ss_dssp --HHHTHHHHHHHHTC---SSHHHHHHHH
T ss_pred --CHHHHHHHHHHHcCC--CcHHHHHHHH
Confidence 356889999988776 3455565543
No 26
>PRK09687 putative lyase; Provisional
Probab=91.09 E-value=11 Score=38.07 Aligned_cols=99 Identities=9% Similarity=0.006 Sum_probs=56.4
Q ss_pred hhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHh-hCCCChHHHHHHHHH
Q 012466 237 RHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGI-LGSPFKAWHCAAAEL 315 (463)
Q Consensus 237 ~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~-L~S~Dr~~~l~aLE~ 315 (463)
+.++..+..+++. ++...|..+.++|+.|...-. . ....+..|..+ +..+|-.+...|.++
T Consensus 53 ~~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~------~---------~~~a~~~L~~l~~~D~d~~VR~~A~~a 114 (280)
T PRK09687 53 QDVFRLAIELCSS---KNPIERDIGADILSQLGMAKR------C---------QDNVFNILNNLALEDKSACVRASAINA 114 (280)
T ss_pred chHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCcc------c---------hHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 5555666665444 456799999999999763100 0 13355666554 566666666788888
Q ss_pred HHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHH
Q 012466 316 LGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGAL 359 (463)
Q Consensus 316 L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~L 359 (463)
|++++....+. .+..++.+...+..+|...+.++...|
T Consensus 115 LG~~~~~~~~~------~~~a~~~l~~~~~D~~~~VR~~a~~aL 152 (280)
T PRK09687 115 TGHRCKKNPLY------SPKIVEQSQITAFDKSTNVRFAVAFAL 152 (280)
T ss_pred Hhccccccccc------chHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 98887544321 222333444444444444444444444
No 27
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.81 E-value=2.1 Score=50.43 Aligned_cols=131 Identities=20% Similarity=0.238 Sum_probs=95.3
Q ss_pred hhhhhhcCCCCCCcHHHHhhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHH
Q 012466 216 ASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVE 295 (463)
Q Consensus 216 as~ILRNLSf~~~N~~~LA~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~ 295 (463)
++-|-||.- |+ +=|.++.||+.|.++... .+|+.+|=||.++...+.-.. + . ++ +.+..
T Consensus 104 iAeia~~~l--~e------~WPell~~L~q~~~S~~~---~~rE~al~il~s~~~~~~~~~---~--~--~~---~~l~~ 162 (1075)
T KOG2171|consen 104 IAEIARNDL--PE------KWPELLQFLFQSTKSPNP---SLRESALLILSSLPETFGNTL---Q--P--HL---DDLLR 162 (1075)
T ss_pred HHHHHHhcc--cc------chHHHHHHHHHHhcCCCc---chhHHHHHHHHhhhhhhcccc---c--h--hH---HHHHH
Confidence 688889864 33 789999999999998754 499999999999987665442 0 0 11 34666
Q ss_pred HHHHhhCCCChHHHHHHHHHHHhhcCCCCCcc----ccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCH
Q 012466 296 AIMGILGSPFKAWHCAAAELLGRLIINPDNEP----FLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNV 367 (463)
Q Consensus 296 tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~----~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~ 367 (463)
.+..++..++..+...|+++++.++.--+|+. .+-..+|.++.-+-+.+...|.+-..-++++|--|+....
T Consensus 163 lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~p 238 (1075)
T KOG2171|consen 163 LFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEP 238 (1075)
T ss_pred HHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhch
Confidence 67788888887788999999999988765432 2345567767667677777777766677777766666543
No 28
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=90.61 E-value=5.4 Score=42.66 Aligned_cols=131 Identities=18% Similarity=0.179 Sum_probs=86.4
Q ss_pred CChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCC
Q 012466 252 TEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLP 331 (463)
Q Consensus 252 ~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~ 331 (463)
+.+..+|-.||-++++|+.. .+ -..++..+..++.+++-.+...|+-++.++.....+
T Consensus 90 ~~n~~~~~lAL~~l~~i~~~--------------~~--~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~------ 147 (526)
T PF01602_consen 90 SPNPYIRGLALRTLSNIRTP--------------EM--AEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPD------ 147 (526)
T ss_dssp SSSHHHHHHHHHHHHHH-SH--------------HH--HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC------
T ss_pred CCCHHHHHHHHhhhhhhccc--------------ch--hhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHH------
Confidence 34567999999999999822 12 245778888899888888888999999999877443
Q ss_pred CchH-HHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhc
Q 012466 332 FVPQ-IHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVS 409 (463)
Q Consensus 332 ~~p~-i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~ 409 (463)
.++. +++.+.++|.-+|..++.+++-+++.+ ..+++... ...+..+..|.+++... +|-+..++...|..+++
T Consensus 148 ~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~--~~~~~~~~~L~~~l~~~--~~~~q~~il~~l~~~~~ 221 (526)
T PF01602_consen 148 LVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK--SLIPKLIRILCQLLSDP--DPWLQIKILRLLRRYAP 221 (526)
T ss_dssp CHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT--THHHHHHHHHHHHHTCC--SHHHHHHHHHHHTTSTS
T ss_pred HHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh--hhHHHHHHHhhhccccc--chHHHHHHHHHHHhccc
Confidence 2333 688899999888899999999999999 33332211 22344455555555333 33333334444444443
No 29
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=90.37 E-value=5.6 Score=40.44 Aligned_cols=204 Identities=15% Similarity=0.133 Sum_probs=120.5
Q ss_pred CCCCCCcHHHHhhChh-----HHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHH
Q 012466 223 FSFMPDNEVIMAQHRH-----CLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAI 297 (463)
Q Consensus 223 LSf~~~N~~~LA~~~~-----ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL 297 (463)
++-.|.....+..... .+.-++..++. .|.-+...+.-++..++.+-+....... . .+ -..+++.|
T Consensus 85 l~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~---~D~~i~~~a~~iLt~Ll~~~~~~~~~~~--~--~~--l~~ll~~L 155 (312)
T PF03224_consen 85 LSDDPSRVELFLELAKQDDSDPYSPFLKLLDR---NDSFIQLKAAFILTSLLSQGPKRSEKLV--K--EA--LPKLLQWL 155 (312)
T ss_dssp HH-SSSSHHHHHHHHH-TTH--HHHHHHH-S----SSHHHHHHHHHHHHHHHTSTTT--HHHH--H--HH--HHHHHHHH
T ss_pred HhcCHHHHHHHHHhcccccchhHHHHHHHhcC---CCHHHHHHHHHHHHHHHHcCCccccchH--H--HH--HHHHHHHH
Confidence 3444555555554221 33333333333 3556788888888888866443311000 0 00 12245555
Q ss_pred HHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCCchHHHHHHHHhc-------CCcHHHHHHHHHHHHHHhhccCHHHH
Q 012466 298 MGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLM-------SLPAFDAQAAAVGALYNLAEVNVDCR 370 (463)
Q Consensus 298 ~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL-------~l~D~~Ll~aaLe~LY~Lt~l~~~~~ 370 (463)
...+.+++...+..|+.+|..|...+.....+.. ...++.++++| .-.+..++=.++=|+..||.-.. .+
T Consensus 156 ~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~--~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~ 232 (312)
T PF03224_consen 156 SSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK--SNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPE-IA 232 (312)
T ss_dssp H-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT--HHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHH-HH
T ss_pred HHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh--cCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHH-HH
Confidence 5555556666779999999999988888766665 44677777777 12456888888889999887554 43
Q ss_pred HHhhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCC--cchhHHh--hHHHHHHHH---hccchhHHHHHH
Q 012466 371 LKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQ--NRVLLLA--YENAFAEIL---FSDGRYSDTFAR 440 (463)
Q Consensus 371 ~~ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~~p~--n~~~ll~--~E~~l~~i~---~sD~~~~~~~~~ 440 (463)
..+.... .|..|+.++.... -..+.|-+=.+|.||...+. +.+.++. .-+.+..+. .+|+...+-+..
T Consensus 233 ~~~~~~~-~i~~L~~i~~~~~-KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~ 307 (312)
T PF03224_consen 233 EELNKKY-LIPLLADILKDSI-KEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTEDLEF 307 (312)
T ss_dssp HHHHTTS-HHHHHHHHHHH---SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHHHHH
T ss_pred HHHhccc-hHHHHHHHHHhcc-cchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 4454444 9999999998772 45599999999999998887 5544432 222222222 368887776654
No 30
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=89.59 E-value=8.1 Score=40.66 Aligned_cols=114 Identities=21% Similarity=0.196 Sum_probs=79.4
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCC------
Q 012466 338 KRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEP------ 411 (463)
Q Consensus 338 ~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~~p------ 411 (463)
...+++|.....+.++-++=+|=+++.=.+ .|+-+..+-++.+-|+.++...-+.-.|.|-|.=||++|++.-
T Consensus 160 PlfiqlL~s~~~~V~eQavWALGNiAGDS~-~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w 238 (526)
T COG5064 160 PLFIQLLSSTEDDVREQAVWALGNIAGDSE-GCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDW 238 (526)
T ss_pred HHHHHHHcCchHHHHHHHHHHhccccCCch-hHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCch
Confidence 366788888899999999888888776555 5566788889999999999776444578999999999999753
Q ss_pred CcchhHHhhHHHHHHHHh-ccchhHHHHHHHHHHHhcCCCccccc
Q 012466 412 QNRVLLLAYENAFAEILF-SDGRYSDTFARILYELTSRPNNKVAS 455 (463)
Q Consensus 412 ~n~~~ll~~E~~l~~i~~-sD~~~~~~~~~iL~~l~~~~~~~~~~ 455 (463)
.|.+.-+| .|+-+-. .|+.|-.--.-.+.+|+-+|+.|..+
T Consensus 239 ~~isqalp---iL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~a 280 (526)
T COG5064 239 SNISQALP---ILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQA 280 (526)
T ss_pred HHHHHHHH---HHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHH
Confidence 33333343 2333333 36665544444455666666666443
No 31
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.37 E-value=7.5 Score=44.62 Aligned_cols=116 Identities=27% Similarity=0.360 Sum_probs=81.6
Q ss_pred hHHHHHHHHHHHHhhCCCccccccCCCcccccccc-----------hhHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCC
Q 012466 254 DEELVTNALETIVNLAPLLDLRIFSSSKQSYIKIT-----------REKRAVEAIMGILGSPFKAWHCAAAELLGRLIIN 322 (463)
Q Consensus 254 d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~-----------~~~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~ 322 (463)
+.+||..|.+||+.--..=| .+.+|+-+. .-.+--.||.+||..+|-.+..+|||.+.+| .|
T Consensus 307 ~~~LrvlainiLgkFL~n~d------~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~l-vn 379 (866)
T KOG1062|consen 307 NSGLRVLAINILGKFLLNRD------NNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYAL-VN 379 (866)
T ss_pred CchHHHHHHHHHHHHhcCCc------cceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH-hc
Confidence 45799999999887542211 122222111 1244567899999999999999999998888 77
Q ss_pred CCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhh-cchhHHHHHHHhhcCC
Q 012466 323 PDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLA-SERWAIDRLLRVIKTP 390 (463)
Q Consensus 323 ~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia-~~~~~V~~LV~Ll~~~ 390 (463)
+.|. ..+.++++.+|-..|+++..-+.--+.-+++ +.| ..+|-||.+.+.++++
T Consensus 380 ~~Nv-------~~mv~eLl~fL~~~d~~~k~~~as~I~~laE-------kfaP~k~W~idtml~Vl~~a 434 (866)
T KOG1062|consen 380 ESNV-------RVMVKELLEFLESSDEDFKADIASKIAELAE-------KFAPDKRWHIDTMLKVLKTA 434 (866)
T ss_pred cccH-------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHH-------hcCCcchhHHHHHHHHHHhc
Confidence 8874 4467899999998888888766665555554 232 5577888888887665
No 32
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=88.25 E-value=1.4 Score=31.04 Aligned_cols=34 Identities=35% Similarity=0.450 Sum_probs=29.4
Q ss_pred hcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhc
Q 012466 374 ASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVS 409 (463)
Q Consensus 374 a~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~ 409 (463)
..+.|.|..|+.||+ |+++++.+.|+.+|.+|++
T Consensus 8 i~~~g~i~~Lv~ll~--~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 8 IVEAGGIPPLVQLLK--SPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHTTHHHHHHHHTT--SSSHHHHHHHHHHHHHHHT
T ss_pred HHHcccHHHHHHHHc--CCCHHHHHHHHHHHHHHhC
Confidence 346789999999999 4489999999999999975
No 33
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=88.12 E-value=4 Score=32.58 Aligned_cols=85 Identities=24% Similarity=0.289 Sum_probs=61.6
Q ss_pred HHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHHHHHhhc
Q 012466 241 ETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELLGRLI 320 (463)
Q Consensus 241 ~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs 320 (463)
..|+..+... .+..+|..++..|+++. ....+..|..++.++|-.+...|.++|+++.
T Consensus 2 ~~L~~~l~~~--~~~~vr~~a~~~L~~~~--------------------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~ 59 (88)
T PF13646_consen 2 PALLQLLQND--PDPQVRAEAARALGELG--------------------DPEAIPALIELLKDEDPMVRRAAARALGRIG 59 (88)
T ss_dssp HHHHHHHHTS--SSHHHHHHHHHHHHCCT--------------------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH
T ss_pred HHHHHHHhcC--CCHHHHHHHHHHHHHcC--------------------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 4556656333 45679999999999543 2347788888899999899999999999983
Q ss_pred CCCCCccccCCCchHHHHHHHHhcCCc-HHHHHHHHHHHH
Q 012466 321 INPDNEPFLLPFVPQIHKRLVDLMSLP-AFDAQAAAVGAL 359 (463)
Q Consensus 321 ~~~~Ne~~ll~~~p~i~~rlv~lL~l~-D~~Ll~aaLe~L 359 (463)
.++.++.+++++.-. +..++..|...|
T Consensus 60 ------------~~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 60 ------------DPEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp ------------HHHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred ------------CHHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 245777777777664 445678777765
No 34
>PRK09687 putative lyase; Provisional
Probab=87.41 E-value=14 Score=37.40 Aligned_cols=30 Identities=10% Similarity=0.160 Sum_probs=20.0
Q ss_pred hHHHHHHHh-hhccCCChHHHHHHHHHHHHhhCC
Q 012466 238 HCLETVFQC-IEDHVTEDEELVTNALETIVNLAP 270 (463)
Q Consensus 238 ~ll~lLl~~-l~~~~~~d~eLr~~aLDil~nIA~ 270 (463)
..+.+|... +++ .+.++|..+...|+++..
T Consensus 90 ~a~~~L~~l~~~D---~d~~VR~~A~~aLG~~~~ 120 (280)
T PRK09687 90 NVFNILNNLALED---KSACVRASAINATGHRCK 120 (280)
T ss_pred HHHHHHHHHHhcC---CCHHHHHHHHHHHhcccc
Confidence 445555443 333 446799999999999864
No 35
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=85.91 E-value=1.9 Score=48.86 Aligned_cols=117 Identities=18% Similarity=0.189 Sum_probs=88.2
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCc--
Q 012466 336 IHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQN-- 413 (463)
Q Consensus 336 i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~~p~n-- 413 (463)
-+.+.+.+|...|...+..+=-+|=.++..+.+.+.+ ..+=+-|..||.|+.+. +.|+-|.|..+|.||+=.-.+
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~-vrqlggI~kLv~Ll~~~--~~evq~~acgaLRNLvf~~~~~~ 310 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSR-VRQLGGIPKLVALLDHR--NDEVQRQACGALRNLVFGKSTDS 310 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHH-HHHhccHHHHHHHhcCC--cHHHHHHHHHHHHhhhcccCCcc
Confidence 3556777788888888877777777777777777664 45556789999999876 899999999999999987766
Q ss_pred chhHHhhHHHHHHHH-----hccchhHHHHHHHHHHHhcCCCccccc
Q 012466 414 RVLLLAYENAFAEIL-----FSDGRYSDTFARILYELTSRPNNKVAS 455 (463)
Q Consensus 414 ~~~ll~~E~~l~~i~-----~sD~~~~~~~~~iL~~l~~~~~~~~~~ 455 (463)
-.+-++.++.+-.++ ..|-++...|+.+||-|||...=|+..
T Consensus 311 NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~i 357 (717)
T KOG1048|consen 311 NKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLI 357 (717)
T ss_pred cchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHH
Confidence 333355555444433 249999999999999999986666543
No 36
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=85.44 E-value=31 Score=40.46 Aligned_cols=157 Identities=19% Similarity=0.075 Sum_probs=81.7
Q ss_pred CChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCC
Q 012466 252 TEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLP 331 (463)
Q Consensus 252 ~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~ 331 (463)
+++..+|..++.+|..+.+ ...+..|...|..+|..+...|++.|+++......+
T Consensus 632 D~d~~VR~~Av~~L~~~~~--------------------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~----- 686 (897)
T PRK13800 632 DPDPGVRRTAVAVLTETTP--------------------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPA----- 686 (897)
T ss_pred CCCHHHHHHHHHHHhhhcc--------------------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCch-----
Confidence 4567899999999998762 114556667777777777778888887774322211
Q ss_pred CchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhh-cch--------------hHHHHHHHhhcCCCCChHH
Q 012466 332 FVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLA-SER--------------WAIDRLLRVIKTPHPVPEV 396 (463)
Q Consensus 332 ~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia-~~~--------------~~V~~LV~Ll~~~~~~~em 396 (463)
..+...|..+|..++.++++.|-.+...+.....+.. ... +.+.-|..++.+ +++++
T Consensus 687 ------~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D--~~~~V 758 (897)
T PRK13800 687 ------PALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATD--ENREV 758 (897)
T ss_pred ------HHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcC--CCHHH
Confidence 1233334445555555555555443211111000000 000 011223344433 37777
Q ss_pred HHHHHHHHHHhhcCCCcchhHHhhHHHHHHH-HhccchhHHHHHHHHHHHhc
Q 012466 397 CRKAAMILESLVSEPQNRVLLLAYENAFAEI-LFSDGRYSDTFARILYELTS 447 (463)
Q Consensus 397 ~rrAA~~L~~l~~~p~n~~~ll~~E~~l~~i-~~sD~~~~~~~~~iL~~l~~ 447 (463)
.+-||..|-.+..... .+ .+. |..+ .=.|+.|-....+-|-++..
T Consensus 759 R~~aa~aL~~~~~~~~-~~----~~~-L~~ll~D~d~~VR~aA~~aLg~~g~ 804 (897)
T PRK13800 759 RIAVAKGLATLGAGGA-PA----GDA-VRALTGDPDPLVRAAALAALAELGC 804 (897)
T ss_pred HHHHHHHHHHhccccc-hh----HHH-HHHHhcCCCHHHHHHHHHHHHhcCC
Confidence 7778888877754311 11 111 2222 22366666666666666644
No 37
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=85.30 E-value=8.7 Score=41.56 Aligned_cols=198 Identities=13% Similarity=0.102 Sum_probs=116.3
Q ss_pred CCCCCCcHHHHhhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhC
Q 012466 223 FSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILG 302 (463)
Q Consensus 223 LSf~~~N~~~LA~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~ 302 (463)
+||.-+|...+-..-.+.--+++++...- ...+++.+++++...|..=. ..+.+. +..+++++..++.
T Consensus 208 ls~~~e~~~~~~~d~sl~~~l~~ll~~~v--~~d~~eM~feila~~aend~---------Vkl~la-~~gl~e~~~~lv~ 275 (604)
T KOG4500|consen 208 LSFVCEMLYPFCKDCSLVFMLLQLLPSMV--REDIDEMIFEILAKAAENDL---------VKLSLA-QNGLLEDSIDLVR 275 (604)
T ss_pred HHHHHHhhhhhhccchHHHHHHHHHHHhh--ccchhhHHHHHHHHHhcCcc---------eeeehh-hcchHHHHHHHHH
Confidence 44444444444444443333333333221 12478888999888874311 111222 3345666655553
Q ss_pred C--------CChHHHHHHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhh
Q 012466 303 S--------PFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLA 374 (463)
Q Consensus 303 S--------~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia 374 (463)
. .++...-++-|..--|.-.++--. -+-.-|+++++++.|+..+|.+++-+..=++-+++.-+..| .. .
T Consensus 276 ~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq-~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~c-i~-~ 352 (604)
T KOG4500|consen 276 NMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQ-KLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDIC-IQ-L 352 (604)
T ss_pred hcccccchHHHHHHHHhhhhHhhhhhcCchHHH-HHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHH-HH-H
Confidence 2 223333333343333333333211 12234789999999999999999999999999999877755 33 3
Q ss_pred cchhHHHHHHHhhcCCC---CChHHHHHHHHHHHHhhcCCCcchhHHhh---HHHHHHHHhccchhH
Q 012466 375 SERWAIDRLLRVIKTPH---PVPEVCRKAAMILESLVSEPQNRVLLLAY---ENAFAEILFSDGRYS 435 (463)
Q Consensus 375 ~~~~~V~~LV~Ll~~~~---~~~em~rrAA~~L~~l~~~p~n~~~ll~~---E~~l~~i~~sD~~~~ 435 (463)
.+.+.+..|+.+|..+| +|.+.---+-..|.+|+=---||+.++|- |.-|..+-.--|+|.
T Consensus 353 v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~ 419 (604)
T KOG4500|consen 353 VQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVT 419 (604)
T ss_pred HHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcch
Confidence 45678999999996654 35554444556678888777889888775 555555444444443
No 38
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=85.27 E-value=6.5 Score=39.99 Aligned_cols=155 Identities=17% Similarity=0.097 Sum_probs=93.7
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCcccc--CCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHH
Q 012466 293 AVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFL--LPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCR 370 (463)
Q Consensus 293 ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~l--l~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~ 370 (463)
.|..+...+.++|......|+.+|++|.........- ...++.+++-+...+..++.+++..++.+|..|.... ..+
T Consensus 106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~-~~R 184 (312)
T PF03224_consen 106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSK-EYR 184 (312)
T ss_dssp -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSH-HHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcc-hhH
Confidence 5777888999999999999999999998876643221 1222233333444344467789999999999997543 343
Q ss_pred HHhhcchhHHHHHHHhh-----cCCCCChHHHHHHHHHHHHhhcCCCcchhHHhhHHHHHHHH-----hccchhHHHHHH
Q 012466 371 LKLASERWAIDRLLRVI-----KTPHPVPEVCRKAAMILESLVSEPQNRVLLLAYENAFAEIL-----FSDGRYSDTFAR 440 (463)
Q Consensus 371 ~~ia~~~~~V~~LV~Ll-----~~~~~~~em~rrAA~~L~~l~~~p~n~~~ll~~E~~l~~i~-----~sD~~~~~~~~~ 440 (463)
. ..-..+.|..|+.++ ..+..+.++.-.+.-.+-.|+=+|+.-..+..+. -+..++ ..-++|..+.--
T Consensus 185 ~-~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~-~i~~L~~i~~~~~KEKvvRv~la 262 (312)
T PF03224_consen 185 Q-VFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKY-LIPLLADILKDSIKEKVVRVSLA 262 (312)
T ss_dssp H-HHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTS-HHHHHHHHHHH--SHHHHHHHHH
T ss_pred H-HHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccc-hHHHHHHHHHhcccchHHHHHHH
Confidence 3 444488999999998 2233355678888888888888888877776555 222222 125566655555
Q ss_pred HHHHHhcCCC
Q 012466 441 ILYELTSRPN 450 (463)
Q Consensus 441 iL~~l~~~~~ 450 (463)
+|.-|-+.+.
T Consensus 263 ~l~Nl~~~~~ 272 (312)
T PF03224_consen 263 ILRNLLSKAP 272 (312)
T ss_dssp HHHHTTSSSS
T ss_pred HHHHHHhccH
Confidence 5555554443
No 39
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=84.99 E-value=8.3 Score=45.14 Aligned_cols=131 Identities=18% Similarity=0.220 Sum_probs=71.7
Q ss_pred CChHHHHHHHHHHHHhhCCCccccccCCCcccccccc---------hh-HHHHHHHHHhhCCCChHHHHHHHHHHHhhcC
Q 012466 252 TEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKIT---------RE-KRAVEAIMGILGSPFKAWHCAAAELLGRLII 321 (463)
Q Consensus 252 ~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~---------~~-~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~ 321 (463)
+.|.++|..++..|..+...-.|...-.+....+... .. ...+..|..++.++|..+...|+++|+++..
T Consensus 725 D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~ 804 (897)
T PRK13800 725 DPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGC 804 (897)
T ss_pred CCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCC
Confidence 4567899999999887642211110000111111110 00 0123445555566665556666666666522
Q ss_pred CCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhcCCCCChHHHHHHH
Q 012466 322 NPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAA 401 (463)
Q Consensus 322 ~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~~~~~~~em~rrAA 401 (463)
.+ .+...++..|.-+|..++..+++.|..+. .+..+..|+.+|++. +.++.+.|+
T Consensus 805 ~~-----------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~------------~~~a~~~L~~~L~D~--~~~VR~~A~ 859 (897)
T PRK13800 805 PP-----------DDVAAATAALRASAWQVRQGAARALAGAA------------ADVAVPALVEALTDP--HLDVRKAAV 859 (897)
T ss_pred cc-----------hhHHHHHHHhcCCChHHHHHHHHHHHhcc------------ccchHHHHHHHhcCC--CHHHHHHHH
Confidence 21 13344566666666677777776664322 234567888888766 667788888
Q ss_pred HHHHHh
Q 012466 402 MILESL 407 (463)
Q Consensus 402 ~~L~~l 407 (463)
..|..+
T Consensus 860 ~aL~~~ 865 (897)
T PRK13800 860 LALTRW 865 (897)
T ss_pred HHHhcc
Confidence 888776
No 40
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=83.76 E-value=13 Score=35.47 Aligned_cols=147 Identities=18% Similarity=0.174 Sum_probs=85.9
Q ss_pred HHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q 012466 239 CLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELLGR 318 (463)
Q Consensus 239 ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~L~r 318 (463)
++..+..++.+.. ..+...++.+++.++..+.-. +. .. .+.++..|...+.+..+...-.|.++|..
T Consensus 54 ~~~~i~~~l~d~R---s~v~~~A~~~l~~l~~~l~~~-~~-------~~--~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~ 120 (228)
T PF12348_consen 54 LLDAIIKQLSDLR---SKVSKTACQLLSDLARQLGSH-FE-------PY--ADILLPPLLKKLGDSKKFIREAANNALDA 120 (228)
T ss_dssp --HHHHH-S-HH------HHHHHHHHHHHHHHHHGGG-GH-------HH--HHHHHHHHHHGGG---HHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhhH---HHHHHHHHHHHHHHHHHHhHh-HH-------HH--HHHHHHHHHHHHccccHHHHHHHHHHHHH
Confidence 3344445544433 348889999999999665422 10 01 35577888888888888888899999998
Q ss_pred hcCCCCCccccCCCchHH-HHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhhc---chhHHHHHHHhhcCCCCCh
Q 012466 319 LIINPDNEPFLLPFVPQI-HKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLAS---ERWAIDRLLRVIKTPHPVP 394 (463)
Q Consensus 319 Ls~~~~Ne~~ll~~~p~i-~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~---~~~~V~~LV~Ll~~~~~~~ 394 (463)
++..-. +.+.+ ...+...+......++..|+++|+.+...-......+.. .+..+..++.+++++ ++
T Consensus 121 i~~~~~-------~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~--~~ 191 (228)
T PF12348_consen 121 IIESCS-------YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDA--DP 191 (228)
T ss_dssp HHTTS--------H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS---H
T ss_pred HHHHCC-------cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCC--CH
Confidence 877432 22445 666777778888999999999999997764311112211 245667777777777 67
Q ss_pred HHHHHHHHHHHHh
Q 012466 395 EVCRKAAMILESL 407 (463)
Q Consensus 395 em~rrAA~~L~~l 407 (463)
++-.-|-..+..+
T Consensus 192 ~VR~~Ar~~~~~l 204 (228)
T PF12348_consen 192 EVREAARECLWAL 204 (228)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6555555555555
No 41
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.21 E-value=19 Score=41.56 Aligned_cols=122 Identities=22% Similarity=0.203 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCCch
Q 012466 255 EELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVP 334 (463)
Q Consensus 255 ~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p 334 (463)
...+.+=|+||.|++..-.. ..++.=+-..+.|.||.....+.+++|+-+.+- ..+.+
T Consensus 371 ~~vk~lKleiLs~La~esni----------------~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~------~sv~~ 428 (968)
T KOG1060|consen 371 TQVKILKLEILSNLANESNI----------------SEILRELQTYIKSSDRSFAAAAVKAIGRCASRI------GSVTD 428 (968)
T ss_pred HHHHHHHHHHHHHHhhhccH----------------HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhh------Cchhh
Confidence 35788889999999854222 225555666788999999999999999987653 34556
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhcC---------------------CCCC
Q 012466 335 QIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKT---------------------PHPV 393 (463)
Q Consensus 335 ~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~~---------------------~~~~ 393 (463)
+...-++++|.-.|.-++..++..+--|-+.+..- +-..|-+|.+++.. .+-.
T Consensus 429 tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~------h~~ii~~La~lldti~vp~ARA~IiWLige~~e~vpri~ 502 (968)
T KOG1060|consen 429 TCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAE------HLEILFQLARLLDTILVPAARAGIIWLIGEYCEIVPRIA 502 (968)
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHH------HHHHHHHHHHHhhhhhhhhhhceeeeeehhhhhhcchhc
Confidence 78888899998888766666666666665554321 12234444444411 1226
Q ss_pred hHHHHHHHHHH
Q 012466 394 PEVCRKAAMIL 404 (463)
Q Consensus 394 ~em~rrAA~~L 404 (463)
|++.|++|...
T Consensus 503 PDVLR~laksF 513 (968)
T KOG1060|consen 503 PDVLRKLAKSF 513 (968)
T ss_pred hHHHHHHHHhh
Confidence 78899998754
No 42
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.22 E-value=6.8 Score=44.98 Aligned_cols=172 Identities=20% Similarity=0.184 Sum_probs=119.6
Q ss_pred ChHHHHHHHHHHHHhhCCCcccc----ccCCCcccccccc----hhHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCCCC
Q 012466 253 EDEELVTNALETIVNLAPLLDLR----IFSSSKQSYIKIT----REKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPD 324 (463)
Q Consensus 253 ~d~eLr~~aLDil~nIA~~l~L~----~~~~s~~~~l~i~----~~~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~ 324 (463)
.|.|+..++|||+-++..+=|-. +...+..-...|+ -.......|+..+.-.|=.+.+.+++.|+.|-.+..
T Consensus 75 ~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~ 154 (970)
T KOG0946|consen 75 MDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRP 154 (970)
T ss_pred CCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCC
Confidence 67899999999999998775421 1110111111111 022345666677777777788899999999987766
Q ss_pred Cc-cccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhcCCCCChH---HHHHH
Q 012466 325 NE-PFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPE---VCRKA 400 (463)
Q Consensus 325 Ne-~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~~~~~~~e---m~rrA 400 (463)
-+ .-.+-..|+-++++|.+|.-.-+.++..++=+|..|+.-+... .+|..-..+-.+|+.+|+.+. ..+ +.--+
T Consensus 155 ~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~I-QKlVAFENaFerLfsIIeeEG-g~dGgIVveDC 232 (970)
T KOG0946|consen 155 TELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSI-QKLVAFENAFERLFSIIEEEG-GLDGGIVVEDC 232 (970)
T ss_pred HHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchH-HHHHHHHHHHHHHHHHHHhcC-CCCCcchHHHH
Confidence 54 1122346788999999999888899999999999999988766 678888889999999997763 222 44445
Q ss_pred HHHHHHhhc-CCCcchhH--HhhHHHHHH
Q 012466 401 AMILESLVS-EPQNRVLL--LAYENAFAE 426 (463)
Q Consensus 401 A~~L~~l~~-~p~n~~~l--l~~E~~l~~ 426 (463)
-..|.+|=| +-.|-.+| -.|=+||.-
T Consensus 233 L~ll~NLLK~N~SNQ~~FrE~~~i~rL~k 261 (970)
T KOG0946|consen 233 LILLNNLLKNNISNQNFFREGSYIPRLLK 261 (970)
T ss_pred HHHHHHHHhhCcchhhHHhccccHHHHHh
Confidence 566666544 55787787 466677773
No 43
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=82.16 E-value=8.7 Score=40.28 Aligned_cols=184 Identities=18% Similarity=0.138 Sum_probs=109.8
Q ss_pred hhhhhcCCCCCCcHHHHhhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHH
Q 012466 217 SNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEA 296 (463)
Q Consensus 217 s~ILRNLSf~~~N~~~LA~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~t 296 (463)
.+|+.=+|..|+-+.+--+ .+++++|..=+ ..++|+-++-+++++...++..=-=+. .++ +.-+.+.
T Consensus 193 eLIieifSiSpesaneckk-SGLldlLeaEl--kGteDtLVianciElvteLaeteHgre---------fla-QeglIdl 259 (524)
T KOG4413|consen 193 ELIIEIFSISPESANECKK-SGLLDLLEAEL--KGTEDTLVIANCIELVTELAETEHGRE---------FLA-QEGLIDL 259 (524)
T ss_pred HHHHHHHhcCHHHHhHhhh-hhHHHHHHHHh--cCCcceeehhhHHHHHHHHHHHhhhhh---------hcc-hhhHHHH
Confidence 6788888888887777655 56666654322 234666678888888777762211010 122 3346677
Q ss_pred HHHhhCCC--ChHHHHHHHHHHHhhcCCCC----CccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHH
Q 012466 297 IMGILGSP--FKAWHCAAAELLGRLIINPD----NEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCR 370 (463)
Q Consensus 297 L~~~L~S~--Dr~~~l~aLE~L~rLs~~~~----Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~ 370 (463)
|+..+... |-+.-.++|-..+|+-.++. -+..+++..+..++...+.+-.+|.+.+++++|.|=++-+--...-
T Consensus 260 icnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGad 339 (524)
T KOG4413|consen 260 ICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGAD 339 (524)
T ss_pred HHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhH
Confidence 77777644 44455666666666554433 3344555555567777788889999999999999998877633333
Q ss_pred HHhhcchhHHHHHHHhhcCC--CCChHHHHHHHHHHHHhhcCCCc
Q 012466 371 LKLASERWAIDRLLRVIKTP--HPVPEVCRKAAMILESLVSEPQN 413 (463)
Q Consensus 371 ~~ia~~~~~V~~LV~Ll~~~--~~~~em~rrAA~~L~~l~~~p~n 413 (463)
.-+..-+..-.||+.=.-+. |..++..-+|-..+...-+-|-|
T Consensus 340 lllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpe 384 (524)
T KOG4413|consen 340 LLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPE 384 (524)
T ss_pred HHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChh
Confidence 33445565777777554332 54454333333333333333433
No 44
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=80.84 E-value=63 Score=37.43 Aligned_cols=155 Identities=21% Similarity=0.107 Sum_probs=114.0
Q ss_pred CChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCC
Q 012466 252 TEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLP 331 (463)
Q Consensus 252 ~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~ 331 (463)
+.|.|+|+..=--+++.|..-. .. ......++..=+.+++-.....||++++.|=.+ +
T Consensus 66 trd~ElKrL~ylYl~~yak~~P---------~~-----~lLavNti~kDl~d~N~~iR~~AlR~ls~l~~~--------e 123 (757)
T COG5096 66 TRDVELKRLLYLYLERYAKLKP---------EL-----ALLAVNTIQKDLQDPNEEIRGFALRTLSLLRVK--------E 123 (757)
T ss_pred hcCHHHHHHHHHHHHHHhccCH---------HH-----HHHHHHHHHhhccCCCHHHHHHHHHHHHhcChH--------H
Confidence 4677888887666676664321 00 233566666777888888999999999988443 2
Q ss_pred CchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCC
Q 012466 332 FVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEP 411 (463)
Q Consensus 332 ~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~~p 411 (463)
.+++++.-+.+++..+....+-.+..++-.|=+++.+- .+..|.+++|..++.+. +|.+++-|-.+|..+--+
T Consensus 124 l~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l----~~~~g~~~~l~~l~~D~--dP~Vi~nAl~sl~~i~~e- 196 (757)
T COG5096 124 LLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDL----YHELGLIDILKELVADS--DPIVIANALASLAEIDPE- 196 (757)
T ss_pred HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhh----hhcccHHHHHHHHhhCC--CchHHHHHHHHHHHhchh-
Confidence 45678888999999999999999888888888887754 45678999999999887 666676666666655433
Q ss_pred CcchhHHhhHHHHHHHHhccchhH
Q 012466 412 QNRVLLLAYENAFAEILFSDGRYS 435 (463)
Q Consensus 412 ~n~~~ll~~E~~l~~i~~sD~~~~ 435 (463)
.-++++..+..++-++-+.+..++
T Consensus 197 ~a~~~~~~~~~~i~~l~~~~~~~~ 220 (757)
T COG5096 197 LAHGYSLEVILRIPQLDLLSLSVS 220 (757)
T ss_pred hhhhHHHHHHHHhhhccchhhhhh
Confidence 378888888888888665555544
No 45
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=77.81 E-value=29 Score=36.71 Aligned_cols=115 Identities=17% Similarity=0.113 Sum_probs=81.6
Q ss_pred HHHHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhc
Q 012466 309 HCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIK 388 (463)
Q Consensus 309 ~l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~ 388 (463)
...||+.+.++..-..+... +...+.+.+|.....+|+-++-.|+|.|+.++-.+++.... -+.+.-|++.+.
T Consensus 85 R~QALkliR~~l~~~~~~~~---~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~----~gG~~~L~~~l~ 157 (371)
T PF14664_consen 85 REQALKLIRAFLEIKKGPKE---IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAE----CGGIRVLLRALI 157 (371)
T ss_pred HHHHHHHHHHHHHhcCCccc---CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHH----cCCHHHHHHHHH
Confidence 45666666666555333211 23348888888888899999999999999999998865433 566788887776
Q ss_pred CCCCChHHHHHHHHHHHHhhcCCCcchhHHh-hHHHHHHHHhccc
Q 012466 389 TPHPVPEVCRKAAMILESLVSEPQNRVLLLA-YENAFAEILFSDG 432 (463)
Q Consensus 389 ~~~~~~em~rrAA~~L~~l~~~p~n~~~ll~-~E~~l~~i~~sD~ 432 (463)
.| ..++.--...+++.+-..|+.|.++.+ ++-..+--.++|.
T Consensus 158 d~--~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~ 200 (371)
T PF14664_consen 158 DG--SFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDF 200 (371)
T ss_pred hc--cHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhh
Confidence 54 334566688899999999999999977 5544433345555
No 46
>PF05536 Neurochondrin: Neurochondrin
Probab=77.75 E-value=37 Score=37.67 Aligned_cols=155 Identities=23% Similarity=0.227 Sum_probs=112.0
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccc----cCC-CchHHHHHHHHhcCC----cHHHHHHHHHHHHHHh
Q 012466 292 RAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPF----LLP-FVPQIHKRLVDLMSL----PAFDAQAAAVGALYNL 362 (463)
Q Consensus 292 ~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~----ll~-~~p~i~~rlv~lL~l----~D~~Ll~aaLe~LY~L 362 (463)
..++-...+|.+.|......+|=.+.|++.+++.... +-+ .-++++.|+.+=-.. +..+++..++..|..+
T Consensus 5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 3566677888899888889999999999997663211 222 233467776443333 4569999999999999
Q ss_pred hccCHHHHHHhhcchh---HHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCcchhHHhhH--HHHHHHHhccchhHHH
Q 012466 363 AEVNVDCRLKLASERW---AIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLLAYE--NAFAEILFSDGRYSDT 437 (463)
Q Consensus 363 t~l~~~~~~~ia~~~~---~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~~p~n~~~ll~~E--~~l~~i~~sD~~~~~~ 437 (463)
+.- ++ ++.++. .|..|+..++.+- ..+|..-|-..|..++..|+-+..|+..+ +.|.++..+-+...+.
T Consensus 85 ~~~-~~----~a~~~~~~~~IP~Lle~l~~~s-~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~~~~~E~ 158 (543)
T PF05536_consen 85 CRD-PE----LASSPQMVSRIPLLLEILSSSS-DLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQSFQMEI 158 (543)
T ss_pred cCC-hh----hhcCHHHHHHHHHHHHHHHcCC-chhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhCcchHHH
Confidence 993 22 333333 4677788887763 25899999999999999999999998854 3566666677777888
Q ss_pred HHHHHHHHhcCCCcc
Q 012466 438 FARILYELTSRPNNK 452 (463)
Q Consensus 438 ~~~iL~~l~~~~~~~ 452 (463)
...+|.-+.++...+
T Consensus 159 Al~lL~~Lls~~~~~ 173 (543)
T PF05536_consen 159 ALNLLLNLLSRLGQK 173 (543)
T ss_pred HHHHHHHHHHhcchh
Confidence 888888877766543
No 47
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=77.54 E-value=13 Score=35.67 Aligned_cols=82 Identities=16% Similarity=0.130 Sum_probs=58.3
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHH
Q 012466 291 KRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCR 370 (463)
Q Consensus 291 ~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~ 370 (463)
+..+.++...|...+......|.+.+..|... ++.+.++|++||++.-+-.-|...|.+...++|.+|-+|...++.+.
T Consensus 37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~-~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG 115 (183)
T PF10274_consen 37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLER-GGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVG 115 (183)
T ss_pred hhHHHHHHhhhhccCccHHHHHHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhh
Confidence 44566666666554444444444444444444 66778999999999999999999999999999999999966555444
Q ss_pred HHh
Q 012466 371 LKL 373 (463)
Q Consensus 371 ~~i 373 (463)
.++
T Consensus 116 ~aL 118 (183)
T PF10274_consen 116 EAL 118 (183)
T ss_pred HHH
Confidence 443
No 48
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.38 E-value=31 Score=39.90 Aligned_cols=119 Identities=20% Similarity=0.325 Sum_probs=84.2
Q ss_pred hHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhC-CCChHHHHHHHHHHHhhcCCCCCc------
Q 012466 254 DEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILG-SPFKAWHCAAAELLGRLIINPDNE------ 326 (463)
Q Consensus 254 d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~-S~Dr~~~l~aLE~L~rLs~~~~Ne------ 326 (463)
|..-...+=|+|+++|..-|.+ ++ +. .--+|+++...+. -++.+....|..||+|+-.|.+|.
T Consensus 265 d~daSd~M~DiLaqvatntdss-----kN----~G-nAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaL 334 (866)
T KOG1062|consen 265 DADASDLMNDILAQVATNTDSS-----KN----AG-NAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVAL 334 (866)
T ss_pred CccHHHHHHHHHHHHHhccccc-----cc----ch-hHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeeh
Confidence 3457788889999999776544 11 22 3347888866543 345567889999999999998774
Q ss_pred cccCCCc---hHHHHH----HHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhcCC
Q 012466 327 PFLLPFV---PQIHKR----LVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTP 390 (463)
Q Consensus 327 ~~ll~~~---p~i~~r----lv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~~~ 390 (463)
+.++..+ |+..+| |++-|-.+|+-++--+||++|.|+.-+ +++..|+.|+.+|+..
T Consensus 335 n~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~--------Nv~~mv~eLl~fL~~~ 397 (866)
T KOG1062|consen 335 NMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNES--------NVRVMVKELLEFLESS 397 (866)
T ss_pred hhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhccc--------cHHHHHHHHHHHHHhc
Confidence 1233333 444443 788889999999999999999998753 3355677888888665
No 49
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.09 E-value=25 Score=40.63 Aligned_cols=121 Identities=20% Similarity=0.193 Sum_probs=89.3
Q ss_pred CChHHHHHHHHHHHhhcCCCC------CccccCCC----c------hHHHHHHHHhcCCcHHHHHHHHHHHHHHhhcc-C
Q 012466 304 PFKAWHCAAAELLGRLIINPD------NEPFLLPF----V------PQIHKRLVDLMSLPAFDAQAAAVGALYNLAEV-N 366 (463)
Q Consensus 304 ~Dr~~~l~aLE~L~rLs~~~~------Ne~~ll~~----~------p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l-~ 366 (463)
.|-..+-.+|+++..+...++ |..--..+ - +..+.-++.++..-|.-++-+++..|-++-+- +
T Consensus 75 ~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~ 154 (970)
T KOG0946|consen 75 MDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRP 154 (970)
T ss_pred CCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCC
Confidence 455667788888888888875 32200000 0 11455566777777888999999999987665 7
Q ss_pred HHHHHHhhcchhHHHHHHHhhcCCCCChHHHHHHHHH-HHHhhcCCCcchhHHhhHHHHHHH
Q 012466 367 VDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMI-LESLVSEPQNRVLLLAYENAFAEI 427 (463)
Q Consensus 367 ~~~~~~ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~-L~~l~~~p~n~~~ll~~E~~l~~i 427 (463)
......|...|-.|..|+.+|.+.| |+.|-+|.. |..|++.-.+..-++.||+.+..+
T Consensus 155 ~e~q~~ll~~P~gIS~lmdlL~Dsr---E~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerL 213 (970)
T KOG0946|consen 155 TELQDALLVSPMGISKLMDLLRDSR---EPIRNEAILLLSELVKDNSSIQKLVAFENAFERL 213 (970)
T ss_pred HHHHHHHHHCchhHHHHHHHHhhhh---hhhchhHHHHHHHHHccCchHHHHHHHHHHHHHH
Confidence 8888888999999999999998775 445665554 567888888999999999987763
No 50
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=75.90 E-value=9.4 Score=43.20 Aligned_cols=141 Identities=22% Similarity=0.237 Sum_probs=80.7
Q ss_pred hhCCCChHHHHHHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcC----------------CcHHHHHHHHHHHHHHhh
Q 012466 300 ILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMS----------------LPAFDAQAAAVGALYNLA 363 (463)
Q Consensus 300 ~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~----------------l~D~~Ll~aaLe~LY~Lt 363 (463)
.|..+|+. +.-=||||+.++..-. .-++|+.+.+|+|++++|. .||-+.+..+||++.-|+
T Consensus 571 ~lsd~DKd-LfPLLEClSsia~AL~--~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLa 647 (885)
T KOG2023|consen 571 LLSDSDKD-LFPLLECLSSIASALG--VGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLA 647 (885)
T ss_pred hcCcccch-HHHHHHHHHHHHHHHh--ccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHH
Confidence 45555553 4455788888877655 4678888889999998887 256688899999999999
Q ss_pred cc-CHHHHHHhhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhh---------------------cCCCcchhHHhhH
Q 012466 364 EV-NVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLV---------------------SEPQNRVLLLAYE 421 (463)
Q Consensus 364 ~l-~~~~~~~ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~---------------------~~p~n~~~ll~~E 421 (463)
+. |.-.-..++. .+..+.|..-+.+. .||+...|=..|-.|. -.|+|.+.-----
T Consensus 648 egLg~~ie~Lva~-snl~~lll~C~~D~--~peVRQS~FALLGDltk~c~~~v~p~~~~fl~~lg~Nl~~~~isv~nNA~ 724 (885)
T KOG2023|consen 648 EGLGSHIEPLVAQ-SNLLDLLLQCLQDE--VPEVRQSAFALLGDLTKACFEHVIPNLADFLPILGANLNPENISVCNNAI 724 (885)
T ss_pred HHhhhchHHHhhh-ccHHHHHHHHhccC--ChHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHhhcCChhhchHHHHHH
Confidence 86 4322222332 33333333333333 3443333322222222 2344444433333
Q ss_pred HHHHHHHhc-cchhHHHHHHHHHHHh
Q 012466 422 NAFAEILFS-DGRYSDTFARILYELT 446 (463)
Q Consensus 422 ~~l~~i~~s-D~~~~~~~~~iL~~l~ 446 (463)
-.+-+|++. +...-..+.+||+.|-
T Consensus 725 WAiGeia~k~g~~~~~~v~~vl~~L~ 750 (885)
T KOG2023|consen 725 WAIGEIALKMGLKMKQYVSPVLEDLI 750 (885)
T ss_pred HHHHHHHHHhchhhhhHHHHHHHHHH
Confidence 344555653 5555667777766653
No 51
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.85 E-value=28 Score=36.20 Aligned_cols=147 Identities=19% Similarity=0.122 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCCchH
Q 012466 256 ELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQ 335 (463)
Q Consensus 256 eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~ 335 (463)
.+|+.+.+.+.++++. .++.+... +...++.|..++.-.+- ..-|..+|.++++++.-...++..
T Consensus 18 ~v~~~AV~~l~~lt~~-~~~~~~~~---------~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~--- 82 (353)
T KOG2973|consen 18 PVRKAAVEHLLGLTGR-GLQSLSKY---------SEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQD--- 82 (353)
T ss_pred HHHHHHHHHHhhcccc-chhhhccc---------hhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHH---
Confidence 5999999999999887 55543222 23456677777765555 567788899999887544444432
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhhcch----hHHHHH-HHhhcCCCCChH-HHHHHHHHHHHhhc
Q 012466 336 IHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASER----WAIDRL-LRVIKTPHPVPE-VCRKAAMILESLVS 409 (463)
Q Consensus 336 i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~----~~V~~L-V~Ll~~~~~~~e-m~rrAA~~L~~l~~ 409 (463)
++++++..+.-+.-.+-+..-.+|.+||+....++....... ..+..| +++...+- |.. -.-.-|-.+.+|++
T Consensus 83 ~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~-n~~a~f~ylA~vf~nls~ 161 (353)
T KOG2973|consen 83 LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSY-NAYAEFHYLAPVFANLSQ 161 (353)
T ss_pred HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCccc-ccccchhHHHHHHHHHhh
Confidence 566666666655556666777788999998766555444333 333344 44444442 211 13456888999999
Q ss_pred CCCcchhHH
Q 012466 410 EPQNRVLLL 418 (463)
Q Consensus 410 ~p~n~~~ll 418 (463)
.+.-|.+|+
T Consensus 162 ~~~gR~l~~ 170 (353)
T KOG2973|consen 162 FEAGRKLLL 170 (353)
T ss_pred hhhhhhHhc
Confidence 999998884
No 52
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.72 E-value=1.6e+02 Score=34.26 Aligned_cols=226 Identities=18% Similarity=0.189 Sum_probs=112.2
Q ss_pred HHHHhhhhhhhhhhcCCCCCCcHHHHhh-------ChhHHHHHHHhhhccCCChHH-HHHHHHHHHHhhCCCcc---ccc
Q 012466 208 EKQQCAVGASNIIRNFSFMPDNEVIMAQ-------HRHCLETVFQCIEDHVTEDEE-LVTNALETIVNLAPLLD---LRI 276 (463)
Q Consensus 208 ~~qr~a~eas~ILRNLSf~~~N~~~LA~-------~~~ll~lLl~~l~~~~~~d~e-Lr~~aLDil~nIA~~l~---L~~ 276 (463)
+++--++++..|.+|+-++=.-+..|.. .|.|++=-+..++..+ .| -..|.+.-+.+|..+-+ +.+
T Consensus 150 VRrNAilaifsIyk~~~~L~pDapeLi~~fL~~e~DpsCkRNAFi~L~~~D---~ErAl~Yl~~~idqi~~~~~~LqlVi 226 (948)
T KOG1058|consen 150 VRRNAILAIFSIYKNFEHLIPDAPELIESFLLTEQDPSCKRNAFLMLFTTD---PERALNYLLSNIDQIPSFNDSLQLVI 226 (948)
T ss_pred hhhhhheeehhHHhhhhhhcCChHHHHHHHHHhccCchhHHHHHHHHHhcC---HHHHHHHHHhhHhhccCccHHHHHHH
Confidence 3445677889999995555444555543 3566665554444332 12 23333333333332211 110
Q ss_pred ----cCCCcccccccchhHHHHHHHHHhhC-----------------CCChHHHHHHHHHHHhhcCC--CCCccccCCCc
Q 012466 277 ----FSSSKQSYIKITREKRAVEAIMGILG-----------------SPFKAWHCAAAELLGRLIIN--PDNEPFLLPFV 333 (463)
Q Consensus 277 ----~~~s~~~~l~i~~~~~ll~tL~~~L~-----------------S~Dr~~~l~aLE~L~rLs~~--~~Ne~~ll~~~ 333 (463)
+...+.. -....+.++.|..+|. |+|-..+.+|.-++..|... ++|+.+|
T Consensus 227 VE~Irkv~~~~---p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesdnnvklI---- 299 (948)
T KOG1058|consen 227 VELIRKVCLAN---PAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESDNNVKLI---- 299 (948)
T ss_pred HHHHHHHHhcC---HHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccCcchhhh----
Confidence 0000000 0002234555555554 44555567777777777665 3444433
Q ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhcCCCCChH----HH-HHHHHHHHHhh
Q 012466 334 PQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPE----VC-RKAAMILESLV 408 (463)
Q Consensus 334 p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~~~~~~~e----m~-rrAA~~L~~l~ 408 (463)
+..|++++=..+.-.+.+.++|+|--|+.-+-+.|.+ +++--..|+++. |.| +. ++-..|--.
T Consensus 300 --vldrl~~l~~~~~~il~~l~mDvLrvLss~dldvr~K------tldi~ldLvssr--Nvediv~~Lkke~~kT~~~-- 367 (948)
T KOG1058|consen 300 --VLDRLSELKALHEKILQGLIMDVLRVLSSPDLDVRSK------TLDIALDLVSSR--NVEDIVQFLKKEVMKTHNE-- 367 (948)
T ss_pred --hHHHHHHHhhhhHHHHHHHHHHHHHHcCcccccHHHH------HHHHHHhhhhhc--cHHHHHHHHHHHHHhcccc--
Confidence 3556666655555567777777777777777666554 334334444333 221 11 222222222
Q ss_pred cCCCcchhHHhhHHHHHHHHhccchhHHHHHHHHHHHhcCCCccccc
Q 012466 409 SEPQNRVLLLAYENAFAEILFSDGRYSDTFARILYELTSRPNNKVAS 455 (463)
Q Consensus 409 ~~p~n~~~ll~~E~~l~~i~~sD~~~~~~~~~iL~~l~~~~~~~~~~ 455 (463)
.+.+|..+=...=+.+...|+.=|.++..+-.+|.+.=+..|.++++
T Consensus 368 e~d~~~~yRqlLiktih~cav~Fp~~aatvV~~ll~fisD~N~~aas 414 (948)
T KOG1058|consen 368 ESDDNGKYRQLLIKTIHACAVKFPEVAATVVSLLLDFISDSNEAAAS 414 (948)
T ss_pred ccccchHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHhccCCHHHHH
Confidence 33445444333334455555555666666666666666666655444
No 53
>PF12331 DUF3636: Protein of unknown function (DUF3636) ; InterPro: IPR022093 This domain family is found in eukaryotes, and is approximately 160 amino acids in length.
Probab=73.12 E-value=38 Score=31.47 Aligned_cols=96 Identities=22% Similarity=0.199 Sum_probs=62.5
Q ss_pred HHHHHHhhCCCCh-HHHHHHHHHHHhhcCCCCCccccCCCch------HHHHHHHHhcCC-c----------H---HHHH
Q 012466 294 VEAIMGILGSPFK-AWHCAAAELLGRLIINPDNEPFLLPFVP------QIHKRLVDLMSL-P----------A---FDAQ 352 (463)
Q Consensus 294 l~tL~~~L~S~Dr-~~~l~aLE~L~rLs~~~~Ne~~ll~~~p------~i~~rlv~lL~l-~----------D---~~Ll 352 (463)
++.+..+|....+ ..++.-|++|+-=+..+.--++-..-.. .+++|+..+|.- | . ..++
T Consensus 32 ~dFvL~mLs~~Qp~~Di~~mL~lL~TS~lp~S~GpI~~~~~~q~~~e~~iIdrvt~~L~E~P~~d~~~~~~t~~~i~~lR 111 (149)
T PF12331_consen 32 YDFVLMMLSPKQPLDDIILMLNLLSTSVLPDSFGPITDDESDQKNVENYIIDRVTNLLSEPPKVDEGWAPYTPAEICTLR 111 (149)
T ss_pred HHHHHHHhCccCcHHHHHHHHHHHHhccCCCCcCCCCCCcchhhhHHHHHHHHHHHHccCCCCCCCCCCCCCHHHHHHHH
Confidence 4555666766665 4577777888765554433322221111 289999998874 2 1 2566
Q ss_pred HHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhcCC
Q 012466 353 AAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTP 390 (463)
Q Consensus 353 ~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~~~ 390 (463)
.++|.+|-.+|.-.. -+..||+++-+|.+||+.+..+
T Consensus 112 l~aL~~L~~fa~s~~-G~~~LA~h~~Ai~RLv~~L~~e 148 (149)
T PF12331_consen 112 LEALRTLTSFAFSPF-GALQLASHPTAIPRLVRALHDE 148 (149)
T ss_pred HHHHHHHHHHHcCcH-HHHHHHhCchhHHHHHHHHHcc
Confidence 777777777666555 5678999999999999988653
No 54
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=72.75 E-value=15 Score=36.11 Aligned_cols=181 Identities=19% Similarity=0.113 Sum_probs=103.1
Q ss_pred HHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCCch-H
Q 012466 257 LVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVP-Q 335 (463)
Q Consensus 257 Lr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p-~ 335 (463)
-+-=+||++.-++-+-.-..+-.+.... + ...+...+.....+......+.++|+++++-.+......+..... +
T Consensus 79 ~~fP~lDLlRl~~l~~~~~~~~~~~~~~--~--~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~ 154 (268)
T PF08324_consen 79 SRFPALDLLRLAALHPPASDLLASEDSG--I--ADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSS 154 (268)
T ss_dssp C-HHHHHHHHHHCCCHCHHHHHHSTTTH-----HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTC
T ss_pred cchhHHhHHHHHHhCccHHHHHhccccc--h--HHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccch
Confidence 4666788887777554332111110000 0 011222222333345567789999999999998888777776665 6
Q ss_pred HHHHHHHhcCCc---HHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCC
Q 012466 336 IHKRLVDLMSLP---AFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQ 412 (463)
Q Consensus 336 i~~rlv~lL~l~---D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~~p~ 412 (463)
+++.+.....-. +..++.++--++|+|+-.-......-..+...+.-++..+...-.++|..-|+-.+|=+|...+.
T Consensus 155 i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~ 234 (268)
T PF08324_consen 155 ILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSD 234 (268)
T ss_dssp HHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSH
T ss_pred HHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccCh
Confidence 777777766653 78899999999999987522111100011123444444333333478888889888888887775
Q ss_pred cchhHHh---hHHHHHHHH-h-ccchhHHHHHHH
Q 012466 413 NRVLLLA---YENAFAEIL-F-SDGRYSDTFARI 441 (463)
Q Consensus 413 n~~~ll~---~E~~l~~i~-~-sD~~~~~~~~~i 441 (463)
....... ....+...+ . .++++.++.+.|
T Consensus 235 ~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ei 268 (268)
T PF08324_consen 235 SAKQLAKSLDVKSVLSKKANKSKEPRIKEVAAEI 268 (268)
T ss_dssp HHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred hHHHHHHHcChHHHHHHHHhcccchHHHHHhccC
Confidence 5554433 233322222 2 366666665543
No 55
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=70.09 E-value=58 Score=30.88 Aligned_cols=103 Identities=18% Similarity=0.098 Sum_probs=69.3
Q ss_pred hHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCCCC-CccccCCC
Q 012466 254 DEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPD-NEPFLLPF 332 (463)
Q Consensus 254 d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~-Ne~~ll~~ 332 (463)
..-+++.+-.++..|..+.... .+.++..+...+.+........|++++..+...-. +.+.+...
T Consensus 107 ~~~i~~~a~~~L~~i~~~~~~~--------------~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~ 172 (228)
T PF12348_consen 107 KKFIREAANNALDAIIESCSYS--------------PKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKS 172 (228)
T ss_dssp -HHHHHHHHHHHHHHHTTS-H----------------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--H
T ss_pred cHHHHHHHHHHHHHHHHHCCcH--------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhccc
Confidence 3468999999999988664411 12346777777777777778899999998877765 44555442
Q ss_pred --chHHHHHHHHhcCCcHHHHHHHHHHHHHHhhcc-CHHHH
Q 012466 333 --VPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEV-NVDCR 370 (463)
Q Consensus 333 --~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l-~~~~~ 370 (463)
++++..-++..|.-+|.+++.++-+++-.|.+. ++.+.
T Consensus 173 ~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~ 213 (228)
T PF12348_consen 173 AFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAE 213 (228)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-
T ss_pred chHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhc
Confidence 467888999999999999999999999988765 45443
No 56
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=69.69 E-value=1.2e+02 Score=33.01 Aligned_cols=165 Identities=13% Similarity=0.126 Sum_probs=94.6
Q ss_pred hhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccc--cccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHH
Q 012466 237 RHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDL--RIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAE 314 (463)
Q Consensus 237 ~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L--~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE 314 (463)
+.+..+++.++... ...+..+|+|..+.-+-..-+= ..|.+.. .. ....|..+..+|..+|......|..
T Consensus 52 ~~y~~~~l~ll~~~--~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~-----~~-~~~~~~~fl~lL~~~d~~i~~~a~~ 123 (429)
T cd00256 52 GQYVKTFVNLLSQI--DKDDTVRYVLTLIDDMLQEDDTRVKLFHDDA-----LL-KKKTWEPFFNLLNRQDQFIVHMSFS 123 (429)
T ss_pred HHHHHHHHHHHhcc--CcHHHHHHHHHHHHHHHHhchHHHHHHHHHh-----hc-cccchHHHHHHHcCCchhHHHHHHH
Confidence 45555555555442 3345777777666555433110 0000000 00 0123455556778999999999999
Q ss_pred HHHhhcCCCCCccccCCCchHHHHHHHHhcCCc-HHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhcCCCCC
Q 012466 315 LLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLP-AFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPV 393 (463)
Q Consensus 315 ~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~-D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~~~~~~ 393 (463)
+|++|..... ........+.+++-+...|.-+ +...+..++.+|..|..... .+..+-..+ .|..|+.+|...-.+
T Consensus 124 iLt~l~~~~~-~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~-~R~~f~~~~-~v~~L~~~L~~~~~~ 200 (429)
T cd00256 124 ILAKLACFGL-AKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDE-YRFAFVLAD-GVPTLVKLLSNATLG 200 (429)
T ss_pred HHHHHHhcCc-cccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCch-HHHHHHHcc-CHHHHHHHHhhcccc
Confidence 9999975432 2222223344566666666544 46888888888888877765 334444444 689999999764323
Q ss_pred hHHHHHHHHHHHHhhcCCC
Q 012466 394 PEVCRKAAMILESLVSEPQ 412 (463)
Q Consensus 394 ~em~rrAA~~L~~l~~~p~ 412 (463)
.+..=.+--.+--|+=+|+
T Consensus 201 ~Ql~Y~~ll~lWlLSF~~~ 219 (429)
T cd00256 201 FQLQYQSIFCIWLLTFNPH 219 (429)
T ss_pred HHHHHHHHHHHHHHhccHH
Confidence 3444445555555555554
No 57
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.18 E-value=58 Score=37.46 Aligned_cols=101 Identities=17% Similarity=0.195 Sum_probs=66.0
Q ss_pred HHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcC-CcHHHHHHHHHHHHHHhhccCHHHHHHhh
Q 012466 296 AIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMS-LPAFDAQAAAVGALYNLAEVNVDCRLKLA 374 (463)
Q Consensus 296 tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~-l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia 374 (463)
.|..+|.+..--....|||.+++||+.+.--+ .+-.-.+.+++.|- -+|+-++-.++|+||.++..+.
T Consensus 333 ~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~d----avK~h~d~Ii~sLkterDvSirrravDLLY~mcD~~N------- 401 (938)
T KOG1077|consen 333 QLGQFLSHRETNIRYLALESMCKLASSEFSID----AVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSN------- 401 (938)
T ss_pred HHHHHhhcccccchhhhHHHHHHHHhccchHH----HHHHHHHHHHHHhccccchHHHHHHHHHHHHHhchhh-------
Confidence 34444444444445567777777777633211 11113456677777 6899999999999999988643
Q ss_pred cchhHHHHHHHhhcCCCCC--hHHHHHHHHHHHHhh
Q 012466 375 SERWAIDRLLRVIKTPHPV--PEVCRKAAMILESLV 408 (463)
Q Consensus 375 ~~~~~V~~LV~Ll~~~~~~--~em~rrAA~~L~~l~ 408 (463)
.+-.|+-|+..|++..+. .||.-|+|+.=+--|
T Consensus 402 -ak~IV~elLqYL~tAd~sireeivlKvAILaEKyA 436 (938)
T KOG1077|consen 402 -AKQIVAELLQYLETADYSIREEIVLKVAILAEKYA 436 (938)
T ss_pred -HHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhc
Confidence 244788999999888664 468888887654433
No 58
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.83 E-value=37 Score=38.75 Aligned_cols=139 Identities=14% Similarity=0.164 Sum_probs=87.3
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCc---cccCCCchHHHHHHHH-------------------hcCCcHH
Q 012466 292 RAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNE---PFLLPFVPQIHKRLVD-------------------LMSLPAF 349 (463)
Q Consensus 292 ~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne---~~ll~~~p~i~~rlv~-------------------lL~l~D~ 349 (463)
.++.+|+.+|.|+|.-..-+|+-+|.|+|.-..-. +.....+.-++.+..+ ++.++..
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~q 207 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQ 207 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcH
Confidence 37899999999999888999999999998653210 1111211112333333 3333222
Q ss_pred ---HHHHHHHHHHHHhhcc-CHHHHHHhhc---------chhHHHHHHHhh-----cCCCCChHHHHHHHHHHHHhhcCC
Q 012466 350 ---DAQAAAVGALYNLAEV-NVDCRLKLAS---------ERWAIDRLLRVI-----KTPHPVPEVCRKAAMILESLVSEP 411 (463)
Q Consensus 350 ---~Ll~aaLe~LY~Lt~l-~~~~~~~ia~---------~~~~V~~LV~Ll-----~~~~~~~em~rrAA~~L~~l~~~p 411 (463)
.-++.-||-||+|+.= ++..+-.+|. ..+.+.||=+.+ ....++.++.-.|-...+++|-.|
T Consensus 208 al~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqp 287 (885)
T KOG2023|consen 208 ALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQP 287 (885)
T ss_pred HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCc
Confidence 2346778888888843 2333222221 222333332222 112346678889999999999999
Q ss_pred CcchhHHhhHHHHHHHHhc
Q 012466 412 QNRVLLLAYENAFAEILFS 430 (463)
Q Consensus 412 ~n~~~ll~~E~~l~~i~~s 430 (463)
-.+..+.||=.+|.-+.++
T Consensus 288 i~~~~L~p~l~kliPvLl~ 306 (885)
T KOG2023|consen 288 ICKEVLQPYLDKLIPVLLS 306 (885)
T ss_pred CcHHHHHHHHHHHHHHHHc
Confidence 9999999999988877665
No 59
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=65.73 E-value=30 Score=41.21 Aligned_cols=113 Identities=17% Similarity=0.117 Sum_probs=86.8
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhcc-CHHHHH
Q 012466 293 AVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEV-NVDCRL 371 (463)
Q Consensus 293 ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l-~~~~~~ 371 (463)
+|+.+..+|.|++-...-++|-+|+-++- +-.+.+.+.+|+++.-++..|.-|+...+-+++.++-|+|.= .+..
T Consensus 349 ~~~~l~~~l~S~~w~~R~AaL~Als~i~E--Gc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~i-- 424 (1075)
T KOG2171|consen 349 LFEALEAMLQSTEWKERHAALLALSVIAE--GCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEI-- 424 (1075)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHH--
Confidence 78888899999998888899999987754 444778888999999999999999999999999999999873 3333
Q ss_pred HhhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcC
Q 012466 372 KLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSE 410 (463)
Q Consensus 372 ~ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~~ 410 (463)
.-.++...+.-|+..+.+. .++.+..-||..|.+++-+
T Consensus 425 qk~~~e~l~~aL~~~ld~~-~~~rV~ahAa~al~nf~E~ 462 (1075)
T KOG2171|consen 425 QKKHHERLPPALIALLDST-QNVRVQAHAAAALVNFSEE 462 (1075)
T ss_pred HHHHHHhccHHHHHHhccc-CchHHHHHHHHHHHHHHHh
Confidence 1223444566788777655 2566677788777776543
No 60
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=64.87 E-value=51 Score=35.96 Aligned_cols=160 Identities=17% Similarity=0.082 Sum_probs=113.3
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHhhcCC-CCCccccCCCch-HHHHHHHHhcCCcHH----HHHHHHHHHHHHhhccC
Q 012466 293 AVEAIMGILGSPFKAWHCAAAELLGRLIIN-PDNEPFLLPFVP-QIHKRLVDLMSLPAF----DAQAAAVGALYNLAEVN 366 (463)
Q Consensus 293 ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~-~~Ne~~ll~~~p-~i~~rlv~lL~l~D~----~Ll~aaLe~LY~Lt~l~ 366 (463)
+++.|.+...|+|-.+++.+.|+|+++|-- +.|...+.+.-. ++.=++.+-++..|. ++....-..|.+|.--+
T Consensus 88 ~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~ 167 (604)
T KOG4500|consen 88 ALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDS 167 (604)
T ss_pred HHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCc
Confidence 566677777899999999999999999963 455555554332 344455555555444 88888888999998877
Q ss_pred HHHHHHhhcchhHHHHHHHhhcCCCCCh---HHHHHHHHHHHHhhcC---CCcchhHHhhHHHHHHHHhccchhHHHHHH
Q 012466 367 VDCRLKLASERWAIDRLLRVIKTPHPVP---EVCRKAAMILESLVSE---PQNRVLLLAYENAFAEILFSDGRYSDTFAR 440 (463)
Q Consensus 367 ~~~~~~ia~~~~~V~~LV~Ll~~~~~~~---em~rrAA~~L~~l~~~---p~n~~~ll~~E~~l~~i~~sD~~~~~~~~~ 440 (463)
...+ +-+..-|.+..|+.++--+-.|. ||+.-+--.|+++.++ |.|..-=+-+|-..+.-++..+-....+=.
T Consensus 168 ~~l~-aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~fe 246 (604)
T KOG4500|consen 168 RELR-AQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFE 246 (604)
T ss_pred HHHH-HHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHH
Confidence 7653 44556678888998886653343 6788777788888877 788877788877777777777777776666
Q ss_pred HHHHHhcCCCccc
Q 012466 441 ILYELTSRPNNKV 453 (463)
Q Consensus 441 iL~~l~~~~~~~~ 453 (463)
||-...-+.--|+
T Consensus 247 ila~~aend~Vkl 259 (604)
T KOG4500|consen 247 ILAKAAENDLVKL 259 (604)
T ss_pred HHHHHhcCcceee
Confidence 6666555544443
No 61
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=64.77 E-value=11 Score=32.22 Aligned_cols=66 Identities=18% Similarity=0.206 Sum_probs=53.4
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHH
Q 012466 291 KRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGAL 359 (463)
Q Consensus 291 ~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~L 359 (463)
+.+++.+..++..+|--+...|.|+|..++..-.. -++++.+++|..++.++.-+|...+.++ ++|
T Consensus 26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~--~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~L 91 (97)
T PF12755_consen 26 DEILPPVLKCFDDQDSRVRYYACEALYNISKVARG--EILPYFNEIFDALCKLSADPDENVRSAA-ELL 91 (97)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHcCCchhHHHHH-HHH
Confidence 44778888899999988899999999999876653 3455778899999999999998887766 444
No 62
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=63.63 E-value=14 Score=25.04 Aligned_cols=35 Identities=26% Similarity=0.323 Sum_probs=28.3
Q ss_pred hhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhc
Q 012466 373 LASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVS 409 (463)
Q Consensus 373 ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~ 409 (463)
...+.+.|..|+.++..+ ++++.+-|+.+|.+|+.
T Consensus 7 ~i~~~g~i~~L~~ll~~~--~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 7 AVVDAGGLPALVELLKSE--DEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHcC
Confidence 344567999999999844 68889999999999874
No 63
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.18 E-value=36 Score=35.41 Aligned_cols=104 Identities=22% Similarity=0.240 Sum_probs=80.2
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCcchh
Q 012466 337 HKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVL 416 (463)
Q Consensus 337 ~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~~p~n~~~ 416 (463)
...+|.+|..+...++.++++-|..||.-+- ..-.......+.-|..|+....| .+-||..|-+++..+.=|..
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~~~--~~~~~~~~~~lk~l~qL~~~~~~----~~~a~~alVnlsq~~~l~~~ 78 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGRGL--QSLSKYSEALLKDLTQLLKDLDP----AEPAATALVNLSQKEELRKK 78 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhccccch--hhhccchhhhHHHHHHHccCccc----ccHHHHHHHHHHhhHHHHHH
Confidence 3468899999999999999999999998722 22344566678888888877643 55699999999999998888
Q ss_pred HHhhHHHHHHHHhc---cc--hhHHHHHHHHHHHhcCC
Q 012466 417 LLAYENAFAEILFS---DG--RYSDTFARILYELTSRP 449 (463)
Q Consensus 417 ll~~E~~l~~i~~s---D~--~~~~~~~~iL~~l~~~~ 449 (463)
++.. |+.+.|. |+ ..++.++-.|--|++-.
T Consensus 79 ll~~---~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~ 113 (353)
T KOG2973|consen 79 LLQD---LLKVLMDMLTDPQSPLADLICMLLSNLSRDD 113 (353)
T ss_pred HHHH---HHHHHHHHhcCcccchHHHHHHHHHHhccCc
Confidence 8877 7777763 54 67788888887777654
No 64
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.07 E-value=25 Score=38.65 Aligned_cols=221 Identities=17% Similarity=0.152 Sum_probs=123.2
Q ss_pred cCCCCCCcHHHHhhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCC-ccccccc-------------
Q 012466 222 NFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSS-KQSYIKI------------- 287 (463)
Q Consensus 222 NLSf~~~N~~~LA~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s-~~~~l~i------------- 287 (463)
-|+=.|+|...|-.|.+++.-|-..+...|....||-++++.|+=..+.+-...+.-.. +.-++++
T Consensus 159 qlarNPdNLeeL~~NEt~l~ALaRVlREDWkks~el~TNIiyifFcfst~tkfh~li~~ykIGtLCmn~idhElkRye~w 238 (791)
T KOG1222|consen 159 QLARNPDNLEELVNNETLLMALARVLREDWKKSFELGTNIIYIFFCFSTYTKFHPLIVQYKIGTLCMNAIDHELKRYEFW 238 (791)
T ss_pred HHhcCcchHHHHHhhHHHHHHHHHHHHHHHHHhhccccceeeeeeeccccccccchhhhhhHhHHHHHHHHHHHHHHHHH
Confidence 35556999999999999999999988877733334444444443333322111100000 0000000
Q ss_pred ----------chhHHHHHHH-------HHhhC---CCChHHHHHHHHHHHhhcCCCCCccccCCCchH-HHHHHHHhcCC
Q 012466 288 ----------TREKRAVEAI-------MGILG---SPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQ-IHKRLVDLMSL 346 (463)
Q Consensus 288 ----------~~~~~ll~tL-------~~~L~---S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~-i~~rlv~lL~l 346 (463)
+++++--++| ...+. ......+..|+-.|-+|+.+-.-|..+ ... +..-+|.-|--
T Consensus 239 ~~El~k~krs~de~p~netLk~e~dr~~kklk~~~~KQeqLLrva~ylLlNlAed~~~ElKM---rrkniV~mLVKaLdr 315 (791)
T KOG1222|consen 239 IAELKKTKRSTDEKPKNETLKEEIDRLNKKLKTAIRKQEQLLRVAVYLLLNLAEDISVELKM---RRKNIVAMLVKALDR 315 (791)
T ss_pred HHHHhhhhcccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH---HHHhHHHHHHHHHcc
Confidence 0011111111 11111 111223456666677776544322111 111 45556666666
Q ss_pred cHHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCcchhHHh--hHHHH
Q 012466 347 PAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLLA--YENAF 424 (463)
Q Consensus 347 ~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~~p~n~~~ll~--~E~~l 424 (463)
...+++..++-||-.||-.++.- -.+.+.+.|..|+++.-..||. ..+-.-+.|.+++=..-+|+-.+. +=+-|
T Consensus 316 ~n~~Ll~lv~~FLkKLSIf~eNK--~~M~~~~iveKL~klfp~~h~d--L~~~tl~LlfNlSFD~glr~KMv~~GllP~l 391 (791)
T KOG1222|consen 316 SNSSLLTLVIKFLKKLSIFDENK--IVMEQNGIVEKLLKLFPIQHPD--LRKATLMLLFNLSFDSGLRPKMVNGGLLPHL 391 (791)
T ss_pred cchHHHHHHHHHHHHhhhhccch--HHHHhccHHHHHHHhcCCCCHH--HHHHHHHHhhhccccccccHHHhhccchHHH
Confidence 77899999999999999987642 1356788999999999888753 355455677899988888876532 11222
Q ss_pred HHHHhccchhHHHHHHHHHHHhcCCC
Q 012466 425 AEILFSDGRYSDTFARILYELTSRPN 450 (463)
Q Consensus 425 ~~i~~sD~~~~~~~~~iL~~l~~~~~ 450 (463)
..+.= +..+-.+-.+|||-+|-...
T Consensus 392 ~~ll~-~d~~~~iA~~~lYh~S~dD~ 416 (791)
T KOG1222|consen 392 ASLLD-SDTKHGIALNMLYHLSCDDD 416 (791)
T ss_pred HHHhC-CcccchhhhhhhhhhccCcH
Confidence 22222 33444556677887775443
No 65
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=59.55 E-value=8.6 Score=28.43 Aligned_cols=51 Identities=35% Similarity=0.363 Sum_probs=39.3
Q ss_pred HHHHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHH
Q 012466 309 HCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYN 361 (463)
Q Consensus 309 ~l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~ 361 (463)
...|+.+|++++.... ..+.++.++++..++.+|.-++.+.+..+..+|-+
T Consensus 4 R~~A~~aLg~l~~~~~--~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 4 RRAAAWALGRLAEGCP--ELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHCTTTTTH--HHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhHhcccH--HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 4578889998665544 35666778899999999988888889998877754
No 66
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=59.08 E-value=13 Score=25.08 Aligned_cols=29 Identities=28% Similarity=0.181 Sum_probs=25.2
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhhc
Q 012466 336 IHKRLVDLMSLPAFDAQAAAVGALYNLAE 364 (463)
Q Consensus 336 i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~ 364 (463)
.++.++++|..+|.+++..++.+|++++.
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 56678888888899999999999999873
No 67
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=58.91 E-value=62 Score=30.10 Aligned_cols=89 Identities=19% Similarity=0.184 Sum_probs=63.1
Q ss_pred HHHHHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhhcchhH-HHHHHHh
Q 012466 308 WHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWA-IDRLLRV 386 (463)
Q Consensus 308 ~~l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~-V~~LV~L 386 (463)
+...++.++|-||..-.| ++.+ ....+...|.-++..++..|+-+|.+|..-|. ...++. +..++.+
T Consensus 4 vR~n~i~~l~DL~~r~~~--~ve~----~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~------ik~k~~l~~~~l~~ 71 (178)
T PF12717_consen 4 VRNNAIIALGDLCIRYPN--LVEP----YLPNLYKCLRDEDPLVRKTALLVLSHLILEDM------IKVKGQLFSRILKL 71 (178)
T ss_pred HHHHHHHHHHHHHHhCcH--HHHh----HHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc------eeehhhhhHHHHHH
Confidence 445788899999988875 3333 44455566677889999999999999987553 122333 4777777
Q ss_pred hcCCCCChHHHHHHHHHHHHhhcC
Q 012466 387 IKTPHPVPEVCRKAAMILESLVSE 410 (463)
Q Consensus 387 l~~~~~~~em~rrAA~~L~~l~~~ 410 (463)
+.+. ++++...|...+..+.+.
T Consensus 72 l~D~--~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 72 LVDE--NPEIRSLARSFFSELLKK 93 (178)
T ss_pred HcCC--CHHHHHHHHHHHHHHHHh
Confidence 7655 777777777777777666
No 68
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=58.07 E-value=66 Score=38.81 Aligned_cols=163 Identities=17% Similarity=0.160 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHhhCCCc-cccc-cCCCcccccccchhHHHHHHHHHhhCCCC-hHHHHHHHHHHHhhcCCCCCccccCCC
Q 012466 256 ELVTNALETIVNLAPLL-DLRI-FSSSKQSYIKITREKRAVEAIMGILGSPF-KAWHCAAAELLGRLIINPDNEPFLLPF 332 (463)
Q Consensus 256 eLr~~aLDil~nIA~~l-~L~~-~~~s~~~~l~i~~~~~ll~tL~~~L~S~D-r~~~l~aLE~L~rLs~~~~Ne~~ll~~ 332 (463)
+-.+.+|..|.|+-.+. ||.. |++. . ..|+ .|+.+...|.+.. --++..||+.+.++..+.+= +...
T Consensus 1740 ~~v~m~LtAL~Nli~~nPdlasvfgSe-~--~lig----~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~C---v~~~ 1809 (2235)
T KOG1789|consen 1740 TKVLMTLTALANLVSANPDLASVFGSE-I--LLIG----NFPLLITYLRCRKHPKLQILALQVILLATANKEC---VTDL 1809 (2235)
T ss_pred HHHHHHHHHHHHHHhhCcchhhhccch-h--hhhc----ccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHH---HHHH
Confidence 56788999999987665 5542 3222 1 1233 5777777776543 34788999999999876542 2221
Q ss_pred chH-HHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhh-cCCCCChHHHHHHHHHHHHhhcC
Q 012466 333 VPQ-IHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVI-KTPHPVPEVCRKAAMILESLVSE 410 (463)
Q Consensus 333 ~p~-i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll-~~~~~~~em~rrAA~~L~~l~~~ 410 (463)
... ++..+..+| ......++.+|+.||+|++-+.-.. -|..+|.+..+...+ -..|+++ .-.||..|.-|...
T Consensus 1810 a~~~vL~~LL~lL-HS~PS~R~~vL~vLYAL~S~~~i~k--eA~~hg~l~yil~~~c~~~~~Qq--RAqaAeLlaKl~Ad 1884 (2235)
T KOG1789|consen 1810 ATCNVLTTLLTLL-HSQPSMRARVLDVLYALSSNGQIGK--EALEHGGLMYILSILCLTNSDQQ--RAQAAELLAKLQAD 1884 (2235)
T ss_pred HhhhHHHHHHHHH-hcChHHHHHHHHHHHHHhcCcHHHH--HHHhcCchhhhhHHHhccCcHHH--HHHHHHHHHHhhhc
Confidence 111 344444443 3567899999999999999876543 333455554454433 4445443 33345555555544
Q ss_pred CCcc----hhHHhhHHHHHHHHhccch
Q 012466 411 PQNR----VLLLAYENAFAEILFSDGR 433 (463)
Q Consensus 411 p~n~----~~ll~~E~~l~~i~~sD~~ 433 (463)
|--- --++.|=...+.=+|.|++
T Consensus 1885 kl~GPrV~ITL~kFLP~~f~d~~RD~P 1911 (2235)
T KOG1789|consen 1885 KLTGPRVTITLIKFLPEIFADSLRDSP 1911 (2235)
T ss_pred cccCCceeeehHHhchHHHHHHHhcCH
Confidence 4322 2234444444444444444
No 69
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=57.94 E-value=65 Score=34.19 Aligned_cols=152 Identities=20% Similarity=0.194 Sum_probs=91.0
Q ss_pred hhhhhhcCCCCCCcHHHHhhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHH
Q 012466 216 ASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVE 295 (463)
Q Consensus 216 as~ILRNLSf~~~N~~~LA~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~ 295 (463)
-++|+|| ||....++-..++.-. +.++.+.+=+-++-|....+--. .+..+.-+.+-..+++|.
T Consensus 259 KaLv~R~-------------~~~~~~~~~~L~~lL~--~~~~g~~aA~~f~il~~d~~~~l-~~~~~a~vklLykQR~F~ 322 (415)
T PF12460_consen 259 KALVMRG-------------HPLATELLDKLLELLS--SPELGQQAAKAFGILLSDSDDVL-NKENHANVKLLYKQRFFT 322 (415)
T ss_pred HHHHHcC-------------CchHHHHHHHHHHHhC--ChhhHHHHHHHHhhHhcCcHHhc-CccccchhhhHHhHHHHH
Confidence 4677777 5555555544444221 13466666666666665532110 111112222323556666
Q ss_pred HHHHhh----CCCChHHHHHHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHH
Q 012466 296 AIMGIL----GSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRL 371 (463)
Q Consensus 296 tL~~~L----~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~ 371 (463)
.+...| ...+....-..+.+|+.+-.+-. ...+.+.+|+++.-+++-|.++|.+++.++|+.|..+..-+...-.
T Consensus 323 ~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP-~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~ 401 (415)
T PF12460_consen 323 QVLPKLLEGFKEADDEIKSNYLTALSHLLKNVP-KSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELIS 401 (415)
T ss_pred HHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCC-HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHH
Confidence 654333 33443344566778888876555 3456667777888889999999999999999999999887744322
Q ss_pred HhhcchhHHHHHHHh
Q 012466 372 KLASERWAIDRLLRV 386 (463)
Q Consensus 372 ~ia~~~~~V~~LV~L 386 (463)
-+.+..|.+|+++
T Consensus 402 --~hl~sLI~~LL~l 414 (415)
T PF12460_consen 402 --EHLSSLIPRLLKL 414 (415)
T ss_pred --HHHHHHHHHHHhc
Confidence 2555667776654
No 70
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=57.51 E-value=18 Score=25.25 Aligned_cols=29 Identities=38% Similarity=0.289 Sum_probs=26.7
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhhc
Q 012466 336 IHKRLVDLMSLPAFDAQAAAVGALYNLAE 364 (463)
Q Consensus 336 i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~ 364 (463)
.+..++++|..+|.+++..++-+|.+|++
T Consensus 13 ~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 13 GIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 67899999999999999999999999874
No 71
>PTZ00429 beta-adaptin; Provisional
Probab=56.80 E-value=3.7e+02 Score=31.26 Aligned_cols=129 Identities=16% Similarity=0.074 Sum_probs=73.7
Q ss_pred ChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCC
Q 012466 253 EDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPF 332 (463)
Q Consensus 253 ~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~ 332 (463)
.+.++|+.+---+.+.|..- +. . .-....++..=+.+++-.....||++++++...+ .
T Consensus 80 ~d~elKKLvYLYL~~ya~~~---------pe---l--alLaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~--------i 137 (746)
T PTZ00429 80 TDLELKKLVYLYVLSTARLQ---------PE---K--ALLAVNTFLQDTTNSSPVVRALAVRTMMCIRVSS--------V 137 (746)
T ss_pred CCHHHHHHHHHHHHHHcccC---------hH---H--HHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHH--------H
Confidence 45678888777777776321 00 0 0123455555566666666777778777764321 1
Q ss_pred chHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhc
Q 012466 333 VPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVS 409 (463)
Q Consensus 333 ~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~ 409 (463)
++.+..-+.+.|..++.-.+-.+.-+++.+-..+.+ +....+.++.|..+|.+. ++.+..-|...|..+..
T Consensus 138 ~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe----lv~~~~~~~~L~~LL~D~--dp~Vv~nAl~aL~eI~~ 208 (746)
T PTZ00429 138 LEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ----LFYQQDFKKDLVELLNDN--NPVVASNAAAIVCEVND 208 (746)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc----cccccchHHHHHHHhcCC--CccHHHHHHHHHHHHHH
Confidence 233455555666667777777777777777665553 223445666777766654 44445555555555543
No 72
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=55.19 E-value=1.8e+02 Score=33.07 Aligned_cols=133 Identities=18% Similarity=0.120 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCCchH
Q 012466 256 ELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQ 335 (463)
Q Consensus 256 eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~ 335 (463)
|++.++.|.+.-+-.+..-+ ..++++-||..+....- ...++++|+-|..-..-.+.-..
T Consensus 428 eFK~~~Vdaisd~~~~~p~s--------------kEraLe~LC~fIEDcey--~~I~vrIL~iLG~EgP~a~~P~~---- 487 (898)
T COG5240 428 EFKKYMVDAISDAMENDPDS--------------KERALEVLCTFIEDCEY--HQITVRILGILGREGPRAKTPGK---- 487 (898)
T ss_pred hHHHHHHHHHHHHHhhCchH--------------HHHHHHHHHHHHhhcch--hHHHHHHHHHhcccCCCCCCcch----
Confidence 68888888887776553211 35577888887764432 33456666666544332222222
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHH-HHHHhhcCCCCChHHHHHHHHHHHHhhcCCCcc
Q 012466 336 IHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAID-RLLRVIKTPHPVPEVCRKAAMILESLVSEPQNR 414 (463)
Q Consensus 336 i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~-~LV~Ll~~~~~~~em~rrAA~~L~~l~~~p~n~ 414 (463)
.+..+.+.+.+.+.-++.+++.+|..++---.+ ... +.+|. .|-|-+.+. .-|+.-||+-.|.+|- |+
T Consensus 488 yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d----~~~-~~sv~~~lkRclnD~--DdeVRdrAsf~l~~~~----~~ 556 (898)
T COG5240 488 YVRHIYNRLILENNIVRSAAVQALSKFALNISD----VVS-PQSVENALKRCLNDQ--DDEVRDRASFLLRNMR----LS 556 (898)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhccCccc----ccc-HHHHHHHHHHHhhcc--cHHHHHHHHHHHHhhh----hh
Confidence 334444444578888999999999554432111 111 23433 344666665 5678889999998886 44
Q ss_pred hhHHh
Q 012466 415 VLLLA 419 (463)
Q Consensus 415 ~~ll~ 419 (463)
--++|
T Consensus 557 da~~p 561 (898)
T COG5240 557 DACEP 561 (898)
T ss_pred hhhhc
Confidence 44444
No 73
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.68 E-value=71 Score=33.90 Aligned_cols=141 Identities=17% Similarity=0.175 Sum_probs=87.2
Q ss_pred HHHHHHHhhCC-CC---hHHHHHHHHHHHhhcCCCCCccccCC--CchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccC
Q 012466 293 AVEAIMGILGS-PF---KAWHCAAAELLGRLIINPDNEPFLLP--FVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVN 366 (463)
Q Consensus 293 ll~tL~~~L~S-~D---r~~~l~aLE~L~rLs~~~~Ne~~ll~--~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~ 366 (463)
-+++|.+++.+ ++ |.....|+-+|.+|+.+++|...|.+ ..|.++.-+.+.+ .|+.+++.++-+++-|+-..
T Consensus 284 Gl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~--~~p~Vi~~~~a~i~~l~LR~ 361 (461)
T KOG4199|consen 284 GLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHS--DDPLVIQEVMAIISILCLRS 361 (461)
T ss_pred CHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcC--CChHHHHHHHHHHHHHHhcC
Confidence 35677777765 43 45678999999999999999877764 3344444433333 45556666666777766655
Q ss_pred HHHHHHhhcchhHHHHHHHhhcCCCCCh-HHHHHHHHHHHHhhcCC-CcchhHHhhH-HHHHHHHhccchhHHH
Q 012466 367 VDCRLKLASERWAIDRLLRVIKTPHPVP-EVCRKAAMILESLVSEP-QNRVLLLAYE-NAFAEILFSDGRYSDT 437 (463)
Q Consensus 367 ~~~~~~ia~~~~~V~~LV~Ll~~~~~~~-em~rrAA~~L~~l~~~p-~n~~~ll~~E-~~l~~i~~sD~~~~~~ 437 (463)
++-..+ +-+-|.-+.-|.-++ .||.. .|-|-|+..+.||+.+. +|+..++.+= ..|..-|++..+.+.-
T Consensus 362 pdhsa~-~ie~G~a~~avqAmk-ahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~h~tce~ 433 (461)
T KOG4199|consen 362 PDHSAK-AIEAGAADLAVQAMK-AHPVAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKANHETCEA 433 (461)
T ss_pred cchHHH-HHhcchHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhcCccHHH
Confidence 554333 223333333333332 26654 47899999999998776 6677766553 3455567765554443
No 74
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=51.36 E-value=1.2e+02 Score=31.84 Aligned_cols=153 Identities=20% Similarity=0.062 Sum_probs=98.6
Q ss_pred CCCCCCcHHHHhhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhC
Q 012466 223 FSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILG 302 (463)
Q Consensus 223 LSf~~~N~~~LA~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~ 302 (463)
++=.=+|+.-+.++..+..++. .++. .+.+||.++.++++..+.--.-. +...+ +..++..|...+.
T Consensus 110 lve~iDnAndl~~~ggl~~ll~-~l~~---~~~~lR~~Aa~Vigt~~qNNP~~-----Qe~v~----E~~~L~~Ll~~ls 176 (342)
T KOG2160|consen 110 LVEDIDNANDLISLGGLVPLLG-YLEN---SDAELRELAARVIGTAVQNNPKS-----QEQVI----ELGALSKLLKILS 176 (342)
T ss_pred HHHhhhhHHhHhhccCHHHHHH-HhcC---CcHHHHHHHHHHHHHHHhcCHHH-----HHHHH----HcccHHHHHHHHc
Confidence 3333478888998888888777 4444 34679999999999988432211 10111 2337788888887
Q ss_pred CCChH-HHHHHHHHHHhhcCCCCCccccCCCchH-HHHHHHHhcCC--cHHHHHHHHHHHHHHhhccCHHHHHHhhcchh
Q 012466 303 SPFKA-WHCAAAELLGRLIINPDNEPFLLPFVPQ-IHKRLVDLMSL--PAFDAQAAAVGALYNLAEVNVDCRLKLASERW 378 (463)
Q Consensus 303 S~Dr~-~~l~aLE~L~rLs~~~~Ne~~ll~~~p~-i~~rlv~lL~l--~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~ 378 (463)
+++.- ..-.||=+++.|..+ |.+....|.+- =|+-+.+.|-. .+..+...++.++-.|++-...-+. +++..+
T Consensus 177 ~~~~~~~r~kaL~AissLIRn--~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d-~~~~~~ 253 (342)
T KOG2160|consen 177 SDDPNTVRTKALFAISSLIRN--NKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDED-IASSLG 253 (342)
T ss_pred cCCCchHHHHHHHHHHHHHhc--CcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhh-HHHHhh
Confidence 65543 335666666666544 33333333322 26777777877 4567888888888888887543333 777787
Q ss_pred HHHHHHHhhcCCC
Q 012466 379 AIDRLLRVIKTPH 391 (463)
Q Consensus 379 ~V~~LV~Ll~~~~ 391 (463)
....++.+++..+
T Consensus 254 f~~~~~~l~~~l~ 266 (342)
T KOG2160|consen 254 FQRVLENLISSLD 266 (342)
T ss_pred hhHHHHHHhhccc
Confidence 8888888887763
No 75
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=50.62 E-value=25 Score=37.26 Aligned_cols=104 Identities=13% Similarity=0.187 Sum_probs=70.2
Q ss_pred CcHHHHhhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChH
Q 012466 228 DNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKA 307 (463)
Q Consensus 228 ~N~~~LA~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~ 307 (463)
.|.+.|-+.+-+-.++=.+++.....+.+.|.+.|-.+.+|-.++.-.. ..+.-..++..|.+.|..+|..
T Consensus 310 a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~v---------l~~~l~~LlPLLlqsL~~~~~~ 380 (415)
T PF12460_consen 310 ANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSV---------LLPELPTLLPLLLQSLSLPDAD 380 (415)
T ss_pred chhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHH---------HHHHHHHHHHHHHHHhCCCCHH
Confidence 4556666655544444333333332334589999999999998776432 2222345788889999999999
Q ss_pred HHHHHHHHHHhhcCCCCCccccCCCchHHHHHHHH
Q 012466 308 WHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVD 342 (463)
Q Consensus 308 ~~l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~ 342 (463)
....+|++|..+.... .+.+.+.+..++.+++.
T Consensus 381 v~~s~L~tL~~~l~~~--~~~i~~hl~sLI~~LL~ 413 (415)
T PF12460_consen 381 VLLSSLETLKMILEEA--PELISEHLSSLIPRLLK 413 (415)
T ss_pred HHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHh
Confidence 9999999999987655 45666666666666654
No 76
>PF05268 GP38: Phage tail fibre adhesin Gp38; InterPro: IPR007932 This entry is represented by Bacteriophage T2, Gp38. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains several Gp38 proteins from T-even-like phages. Gp38, together with a second phage protein, Gp57, catalyses the organisation of Gp37 but is absent from the phage particle. Gp37 is responsible for receptor recognition [].
Probab=50.50 E-value=16 Score=36.04 Aligned_cols=19 Identities=53% Similarity=0.803 Sum_probs=12.8
Q ss_pred CCCCCCCCCCCCCCCCCcc
Q 012466 23 RGRPFGSTSGSSGGSGSAA 41 (463)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~ 41 (463)
-|||||..++++-..+.|+
T Consensus 177 GGRPfG~gG~~~~~~~gaa 195 (260)
T PF05268_consen 177 GGRPFGAGGSGSNMSGGAA 195 (260)
T ss_pred CCCccCCCCCcCcCCCccc
Confidence 6899999975554444444
No 77
>PF05536 Neurochondrin: Neurochondrin
Probab=50.37 E-value=2.6e+02 Score=31.11 Aligned_cols=97 Identities=20% Similarity=0.239 Sum_probs=63.2
Q ss_pred CChHHHHHHHHHHHhhcCCCCCccccCCCchHH---HHHHHHhcCCcHH-HHHHHHHHHHHHhhccCHHHHHHhhcchhH
Q 012466 304 PFKAWHCAAAELLGRLIINPDNEPFLLPFVPQI---HKRLVDLMSLPAF-DAQAAAVGALYNLAEVNVDCRLKLASERWA 379 (463)
Q Consensus 304 ~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~i---~~rlv~lL~l~D~-~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~ 379 (463)
+....+-.|+-+|..+|.-++- ...|++ +..+++.+.-.+. ++..-|+++|+.+++..... ..+.. .+.
T Consensus 69 ~~~~~~~LavsvL~~f~~~~~~-----a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~-~aLl~-~g~ 141 (543)
T PF05536_consen 69 PPEEYLSLAVSVLAAFCRDPEL-----ASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGA-KALLE-SGA 141 (543)
T ss_pred CHHHHHHHHHHHHHHHcCChhh-----hcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhH-HHHHh-cCC
Confidence 5567788999999999994432 223453 4445666666666 99999999999999654333 23333 578
Q ss_pred HHHHHHhhcCCCCChHHHHHHHHHHHHhhcC
Q 012466 380 IDRLLRVIKTPHPVPEVCRKAAMILESLVSE 410 (463)
Q Consensus 380 V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~~ 410 (463)
|..|+..+..+ +.. +-.|..+|.++...
T Consensus 142 v~~L~ei~~~~-~~~--~E~Al~lL~~Lls~ 169 (543)
T PF05536_consen 142 VPALCEIIPNQ-SFQ--MEIALNLLLNLLSR 169 (543)
T ss_pred HHHHHHHHHhC-cch--HHHHHHHHHHHHHh
Confidence 99999888773 221 33355555554443
No 78
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=48.80 E-value=1.7e+02 Score=33.27 Aligned_cols=76 Identities=20% Similarity=0.270 Sum_probs=59.4
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCCchHH-HHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHH
Q 012466 293 AVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQI-HKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDC 369 (463)
Q Consensus 293 ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~i-~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~ 369 (463)
..++|...+.++|-.....++.+|.++.=+.+++..+. +...+ -+.++.+..-+|-.++|-|+..|-+|+.-..+.
T Consensus 462 gId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~-~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~s 538 (678)
T KOG1293|consen 462 GIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQ-LLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKS 538 (678)
T ss_pred cHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHH-HHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHH
Confidence 67888999999999888999999999999988864333 22223 334567777899999999999999999875443
No 79
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.71 E-value=5.1e+02 Score=30.44 Aligned_cols=92 Identities=20% Similarity=0.195 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhcCCC---------------CChHHHHHHHHHHHH-hhcCCC
Q 012466 349 FDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPH---------------PVPEVCRKAAMILES-LVSEPQ 412 (463)
Q Consensus 349 ~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~~~~---------------~~~em~rrAA~~L~~-l~~~p~ 412 (463)
..++...+|++|.-.--+. +....-|.-+..||+... ++|...|+||.++.. +.++|+
T Consensus 220 ~~LqlViVE~Irkv~~~~p------~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesd 293 (948)
T KOG1058|consen 220 DSLQLVIVELIRKVCLANP------AEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESD 293 (948)
T ss_pred HHHHHHHHHHHHHHHhcCH------HHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccC
Confidence 3556666666665443221 222345677777875542 356778888887765 568999
Q ss_pred cchhHHhhHHHHHHHHhccch-hHHHHHHHHHHHhc
Q 012466 413 NRVLLLAYENAFAEILFSDGR-YSDTFARILYELTS 447 (463)
Q Consensus 413 n~~~ll~~E~~l~~i~~sD~~-~~~~~~~iL~~l~~ 447 (463)
|+-.+. .+-||.++.-.+.+ ..+.+++||--|++
T Consensus 294 nnvklI-vldrl~~l~~~~~~il~~l~mDvLrvLss 328 (948)
T KOG1058|consen 294 NNVKLI-VLDRLSELKALHEKILQGLIMDVLRVLSS 328 (948)
T ss_pred cchhhh-hHHHHHHHhhhhHHHHHHHHHHHHHHcCc
Confidence 987764 35566666644333 45666677766654
No 80
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=48.28 E-value=30 Score=22.88 Aligned_cols=29 Identities=28% Similarity=0.351 Sum_probs=24.3
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhhc
Q 012466 336 IHKRLVDLMSLPAFDAQAAAVGALYNLAE 364 (463)
Q Consensus 336 i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~ 364 (463)
++..+++++..++.+.+.++..+|.++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 45678889999999999999999998875
No 81
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.32 E-value=1.6e+02 Score=33.25 Aligned_cols=169 Identities=17% Similarity=0.155 Sum_probs=104.2
Q ss_pred CCCCCcHHHHhhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCC
Q 012466 224 SFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGS 303 (463)
Q Consensus 224 Sf~~~N~~~LA~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S 303 (463)
.+-.+++.++++ ++.=++.|+++.+ ..+|-|+-|.+-|||+--.=.. +.. -..+|+.++.....
T Consensus 73 aLg~~~~~Y~~~---iv~Pv~~cf~D~d---~~vRyyACEsLYNiaKv~k~~v--------~~~--Fn~iFdvL~klsaD 136 (675)
T KOG0212|consen 73 ALGIKDAGYLEK---IVPPVLNCFSDQD---SQVRYYACESLYNIAKVAKGEV--------LVY--FNEIFDVLCKLSAD 136 (675)
T ss_pred HhccccHHHHHH---hhHHHHHhccCcc---ceeeeHhHHHHHHHHHHhccCc--------ccc--hHHHHHHHHHHhcC
Confidence 345667777765 3444566777654 4599999999999996532111 111 24588999887765
Q ss_pred CChHHHHHHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHH
Q 012466 304 PFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRL 383 (463)
Q Consensus 304 ~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~L 383 (463)
+|. -+..+.|.|.||..-.-.+.--.=-++.++.-+-+-+-+.+.+-+.+.++-||-|-....- ..+..-+...+-|
T Consensus 137 sd~-~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~--~m~~yl~~~ldGL 213 (675)
T KOG0212|consen 137 SDQ-NVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDL--EMISYLPSLLDGL 213 (675)
T ss_pred Ccc-ccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcH--HHHhcchHHHHHH
Confidence 554 3567888888886543332211111223344444444456888999999999998777431 2455667888999
Q ss_pred HHhhcCCCCChHHHHHHH----HHHHHhhcCCCc
Q 012466 384 LRVIKTPHPVPEVCRKAA----MILESLVSEPQN 413 (463)
Q Consensus 384 V~Ll~~~~~~~em~rrAA----~~L~~l~~~p~n 413 (463)
...|++.| .|+.+-+- ..|..+.+.|+-
T Consensus 214 f~~LsD~s--~eVr~~~~t~l~~fL~eI~s~P~s 245 (675)
T KOG0212|consen 214 FNMLSDSS--DEVRTLTDTLLSEFLAEIRSSPSS 245 (675)
T ss_pred HHHhcCCc--HHHHHHHHHHHHHHHHHHhcCccc
Confidence 99998884 34332222 235556666654
No 82
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=47.31 E-value=23 Score=32.95 Aligned_cols=94 Identities=15% Similarity=0.017 Sum_probs=65.5
Q ss_pred hHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHH
Q 012466 290 EKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDC 369 (463)
Q Consensus 290 ~~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~ 369 (463)
+...++....+|..++.-.+.-++-.||++|.-..|..+|.+... +--++.-|+.|....+-.++-+||.|...+-..
T Consensus 56 ql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~ea~g--~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~ 133 (173)
T KOG4646|consen 56 QLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIREALG--LPLIIFVLSSPPEITVHSAALFLQLLEFGERTE 133 (173)
T ss_pred HhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHHHhcC--CceEEeecCCChHHHHHHHHHHHHHhcCcccch
Confidence 555788888899999999999999999999999999877764321 112344456677777788888888888876555
Q ss_pred HHHhhcchhHHHHHHHh
Q 012466 370 RLKLASERWAIDRLLRV 386 (463)
Q Consensus 370 ~~~ia~~~~~V~~LV~L 386 (463)
+-.+.+ +..|+..-++
T Consensus 134 r~ell~-p~Vv~~v~r~ 149 (173)
T KOG4646|consen 134 RDELLS-PAVVRTVQRW 149 (173)
T ss_pred hHHhcc-HHHHHHHHHH
Confidence 444433 3344444444
No 83
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.02 E-value=1.5e+02 Score=35.95 Aligned_cols=127 Identities=12% Similarity=0.015 Sum_probs=78.0
Q ss_pred ChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccC-C
Q 012466 253 EDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLL-P 331 (463)
Q Consensus 253 ~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll-~ 331 (463)
.++-.|+++++.|-+|+..--..++..+++.. .| ..++..|...+....--.....+=+++.+-.+..| .+. +
T Consensus 750 ~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~-~l---nefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~--~ld~~ 823 (1176)
T KOG1248|consen 750 VNVKARRNAFALLVFIGAIQSSLDDGNEPASA-IL---NEFLSIISAGLVGDSTRVVASDIVAITHILQEFKN--ILDDE 823 (1176)
T ss_pred ccHHHHhhHHHHHHHHHHHHhhhcccccchHH-HH---HHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhc--cccHH
Confidence 45678999999999988411111222221111 11 24667777665443322222226666776666554 222 4
Q ss_pred CchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHh
Q 012466 332 FVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRV 386 (463)
Q Consensus 332 ~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~L 386 (463)
+++++|+.++-+|.-+..+++.+++.|+--+...-++.|.+ .+.+-++..+.++
T Consensus 824 ~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~-~~~~~LL~sll~l 877 (1176)
T KOG1248|consen 824 TLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLS-PHLEELLPSLLAL 877 (1176)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHh-hhHHHHHHHHHHH
Confidence 67789999999999999999999999999988876655443 2333344444443
No 84
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=45.65 E-value=2.8e+02 Score=27.85 Aligned_cols=64 Identities=22% Similarity=0.271 Sum_probs=41.6
Q ss_pred hhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhC-CCChHHHHHHHHH
Q 012466 237 RHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILG-SPFKAWHCAAAEL 315 (463)
Q Consensus 237 ~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~-S~Dr~~~l~aLE~ 315 (463)
...+..+..++.. .+..+|..+.+.++++.. ......|..++. +.+......|.++
T Consensus 73 ~~av~~l~~~l~d---~~~~vr~~a~~aLg~~~~--------------------~~a~~~li~~l~~d~~~~vR~~aa~a 129 (335)
T COG1413 73 EEAVPLLRELLSD---EDPRVRDAAADALGELGD--------------------PEAVPPLVELLENDENEGVRAAAARA 129 (335)
T ss_pred HHHHHHHHHHhcC---CCHHHHHHHHHHHHccCC--------------------hhHHHHHHHHHHcCCcHhHHHHHHHH
Confidence 3444444444444 344789999998877761 224556666666 5777788888888
Q ss_pred HHhhcCCC
Q 012466 316 LGRLIINP 323 (463)
Q Consensus 316 L~rLs~~~ 323 (463)
|+++-...
T Consensus 130 L~~~~~~~ 137 (335)
T COG1413 130 LGKLGDER 137 (335)
T ss_pred HHhcCchh
Confidence 88886554
No 85
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=45.37 E-value=90 Score=22.82 Aligned_cols=54 Identities=24% Similarity=0.087 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHh
Q 012466 350 DAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESL 407 (463)
Q Consensus 350 ~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l 407 (463)
.++..++.+|=++++........ ..+..+..|+.++.+. ++++...|+.+|.+|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~--~~~~~~~~L~~~L~d~--~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQP--YLPELLPALIPLLQDD--DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHH--HHHHHHHHHHHHTTSS--SHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHH--HHHHHHHHHHHHHcCC--CHHHHHHHHHHHhcC
Confidence 35667777777766665544333 6778899999999776 457766666666554
No 86
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=45.30 E-value=43 Score=40.50 Aligned_cols=98 Identities=19% Similarity=0.171 Sum_probs=73.8
Q ss_pred CChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCC
Q 012466 252 TEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLP 331 (463)
Q Consensus 252 ~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~ 331 (463)
+.|-.||-...|.+.-++.++.-.. . +.-++..|...|.....+++..||++|.-|+...--+ -+
T Consensus 628 DkDw~LR~aFfdsI~gvsi~VG~rs----------~--seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~---K~ 692 (1431)
T KOG1240|consen 628 DKDWRLRGAFFDSIVGVSIFVGWRS----------V--SEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLR---KP 692 (1431)
T ss_pred CccHHHHHHHHhhccceEEEEeeee----------H--HHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccc---hH
Confidence 3456788888888887776654331 0 2336677788888888899999999999998765422 13
Q ss_pred CchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhc
Q 012466 332 FVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAE 364 (463)
Q Consensus 332 ~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~ 364 (463)
.+-++.+.+.-+|++|..=++-+++.++|..++
T Consensus 693 ~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 693 AVKDILQDVLPLLCHPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred HHHHHHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence 344588888899999999999999999998776
No 87
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=44.08 E-value=47 Score=34.33 Aligned_cols=56 Identities=23% Similarity=0.172 Sum_probs=47.3
Q ss_pred ChHHHHHHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhcc
Q 012466 305 FKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEV 365 (463)
Q Consensus 305 Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l 365 (463)
|+..++..|+....|-.|=.|..+.- -++++..||..+|.+++.++|++++.+++-
T Consensus 1 D~elv~~IL~Ft~lLLEnc~NRslYs-----S~e~L~~LL~s~~~dVl~~aL~ll~~l~qr 56 (329)
T PF06012_consen 1 DKELVLAILRFTRLLLENCGNRSLYS-----SSEHLNSLLNSTDLDVLLAALRLLLRLAQR 56 (329)
T ss_pred CHHHHHHHHHHHHHHHhccCCCCccc-----cHHHHHHHHcCCCHHHHHHHHHHHHHHHhh
Confidence 67788888888888888877754433 578999999999999999999999998886
No 88
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=44.00 E-value=56 Score=36.55 Aligned_cols=144 Identities=15% Similarity=0.104 Sum_probs=101.4
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHH-HHHHHHHHHHHhhccCHHHH
Q 012466 292 RAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFD-AQAAAVGALYNLAEVNVDCR 370 (463)
Q Consensus 292 ~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~-Ll~aaLe~LY~Lt~l~~~~~ 370 (463)
.+..-|.+.|......+.-++.+|+-+++...+|.+ |.+++|.+++. + .|.. -...|++-|++=+.+..-
T Consensus 295 ~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I~~~ip~Lld~----l--~dp~~~~~e~~~~L~~ttFV~~V-- 365 (569)
T KOG1242|consen 295 DLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-IQKIIPTLLDA----L--ADPSCYTPECLDSLGATTFVAEV-- 365 (569)
T ss_pred HhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-HHHHHHHHHHH----h--cCcccchHHHHHhhcceeeeeee--
Confidence 355666677777788888999999999999999954 55544444443 3 4444 556788888887775422
Q ss_pred HHhhcchhHHHHHHHhhcCC-CC-ChHHHHHHHHHHHHhhcCCCcchhHHhhHHHHHH----HHh-ccchhHHHHHHHHH
Q 012466 371 LKLASERWAIDRLLRVIKTP-HP-VPEVCRKAAMILESLVSEPQNRVLLLAYENAFAE----ILF-SDGRYSDTFARILY 443 (463)
Q Consensus 371 ~~ia~~~~~V~~LV~Ll~~~-~~-~~em~rrAA~~L~~l~~~p~n~~~ll~~E~~l~~----i~~-sD~~~~~~~~~iL~ 443 (463)
+..+++-+|=+|..+ +. +.++-|++|.+.-|+++.=+++..+-||=..|+- +.. .+|.+-.+-+|.|-
T Consensus 366 -----~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~ 440 (569)
T KOG1242|consen 366 -----DAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALG 440 (569)
T ss_pred -----cchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHH
Confidence 124667777777666 22 4567899999999999999888888777555543 222 28999999999995
Q ss_pred HHhcCC
Q 012466 444 ELTSRP 449 (463)
Q Consensus 444 ~l~~~~ 449 (463)
.+-.|-
T Consensus 441 ~l~e~~ 446 (569)
T KOG1242|consen 441 ALLERL 446 (569)
T ss_pred HHHHHH
Confidence 554443
No 89
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.67 E-value=4.3e+02 Score=30.82 Aligned_cols=149 Identities=13% Similarity=0.110 Sum_probs=94.4
Q ss_pred CChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCC
Q 012466 252 TEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLP 331 (463)
Q Consensus 252 ~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~ 331 (463)
+.|+.||=.+|=.+..|++. ++.. -...-+.+.+||..-|-.+.++||+.|..+ +++.|-
T Consensus 310 dsDqNLKYlgLlam~KI~kt---------Hp~~-----Vqa~kdlIlrcL~DkD~SIRlrALdLl~gm-VskkNl----- 369 (877)
T KOG1059|consen 310 DSDQNLKYLGLLAMSKILKT---------HPKA-----VQAHKDLILRCLDDKDESIRLRALDLLYGM-VSKKNL----- 369 (877)
T ss_pred cCCccHHHHHHHHHHHHhhh---------CHHH-----HHHhHHHHHHHhccCCchhHHHHHHHHHHH-hhhhhH-----
Confidence 45667999888888888843 2221 123457789999999999999999999998 455552
Q ss_pred CchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhcc-CHHHHHHhhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHh-hc
Q 012466 332 FVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEV-NVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESL-VS 409 (463)
Q Consensus 332 ~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l-~~~~~~~ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l-~~ 409 (463)
-.|.++++..+.-.|. -.++-+.|+.+.++ ....=.-|..-.|-+.-||.|-..+| -+...+-|.-+..+ .+
T Consensus 370 --~eIVk~LM~~~~~ae~--t~yrdell~~II~iCS~snY~~ItdFEWYlsVlveLa~l~~--~~~G~~I~eQi~Dv~iR 443 (877)
T KOG1059|consen 370 --MEIVKTLMKHVEKAEG--TNYRDELLTRIISICSQSNYQYITDFEWYLSVLVELARLEG--TRHGSLIAEQIIDVAIR 443 (877)
T ss_pred --HHHHHHHHHHHHhccc--hhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccc--cchhhHHHHHHHHHhee
Confidence 2355666655544444 25555666666655 23333457888999999998876553 12233333333333 46
Q ss_pred CCCcchhHHhhHHHHHH
Q 012466 410 EPQNRVLLLAYENAFAE 426 (463)
Q Consensus 410 ~p~n~~~ll~~E~~l~~ 426 (463)
+|.=|+..+..=..|+.
T Consensus 444 V~~iR~fsV~~m~~Ll~ 460 (877)
T KOG1059|consen 444 VPSIRPFSVSQMSALLD 460 (877)
T ss_pred chhhhHhHHHHHHHHHh
Confidence 77777766554444444
No 90
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=42.77 E-value=67 Score=30.34 Aligned_cols=64 Identities=19% Similarity=0.265 Sum_probs=53.2
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHh
Q 012466 336 IHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESL 407 (463)
Q Consensus 336 i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l 407 (463)
.+.++.++...+|..++..++++|-.....| +++...+|..|++|.++. ++.+..+|-..+..|
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qG------LvnP~~cvp~lIAL~ts~--~~~ir~~A~~~l~~l 72 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQG------LVNPKQCVPTLIALETSP--NPSIRSRAYQLLKEL 72 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcC------CCChHHHHhHhhhhhCCC--ChHHHHHHHHHHHHH
Confidence 6778888888899999999999998876644 667778999999999885 787888888877777
No 91
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=41.98 E-value=44 Score=22.05 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=23.0
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHhhcC
Q 012466 294 VEAIMGILGSPFKAWHCAAAELLGRLII 321 (463)
Q Consensus 294 l~tL~~~L~S~Dr~~~l~aLE~L~rLs~ 321 (463)
+..+..++.+++-.+...|.++|++++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 4667888999998899999999999874
No 92
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=41.95 E-value=1.4e+02 Score=34.55 Aligned_cols=113 Identities=19% Similarity=0.185 Sum_probs=68.6
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCC-CchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhcc--CH
Q 012466 291 KRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLP-FVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEV--NV 367 (463)
Q Consensus 291 ~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~-~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l--~~ 367 (463)
..+|.-|.+...++|+.+.-+++-+|+++.- +|. -+-+ ....+.+.+...|--...-.+.-++-+|..|-.. ++
T Consensus 84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d--~~~-eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de 160 (892)
T KOG2025|consen 84 AGTFYHLLRGTESKDKKVRFRVLQILALLSD--ENA-EIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE 160 (892)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHhc--ccc-ccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC
Confidence 3467778888999999999999999999976 221 1111 1112333333333344556777777777777643 22
Q ss_pred HHHHHhhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCcchhHH
Q 012466 368 DCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLL 418 (463)
Q Consensus 368 ~~~~~ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~~p~n~~~ll 418 (463)
++ ..+..|+.++.- .|++|+ |||| |++|+-.+..+|.++
T Consensus 161 e~--------~v~n~l~~liqn-DpS~EV-RRaa--LsnI~vdnsTlp~Iv 199 (892)
T KOG2025|consen 161 EC--------PVVNLLKDLIQN-DPSDEV-RRAA--LSNISVDNSTLPCIV 199 (892)
T ss_pred cc--------cHHHHHHHHHhc-CCcHHH-HHHH--HHhhccCcccchhHH
Confidence 22 234555555544 466665 5565 677777777666654
No 93
>PTZ00429 beta-adaptin; Provisional
Probab=41.70 E-value=6.3e+02 Score=29.47 Aligned_cols=94 Identities=15% Similarity=0.167 Sum_probs=52.3
Q ss_pred ChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCC
Q 012466 253 EDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPF 332 (463)
Q Consensus 253 ~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~ 332 (463)
.+..+|-.+|=++++|-.. .+. ..+...|..++.+.+-.+...|.=|+.|+-....+ .+..
T Consensus 117 ~Np~IRaLALRtLs~Ir~~--------------~i~--e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe--lv~~- 177 (746)
T PTZ00429 117 SSPVVRALAVRTMMCIRVS--------------SVL--EYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ--LFYQ- 177 (746)
T ss_pred CCHHHHHHHHHHHHcCCcH--------------HHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc--cccc-
Confidence 3455677777777666521 011 23455556666666656666666667776544332 1110
Q ss_pred chHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccC
Q 012466 333 VPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVN 366 (463)
Q Consensus 333 ~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~ 366 (463)
..+++++.++|.-+|.+.+..|+-+|+.+...+
T Consensus 178 -~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~ 210 (746)
T PTZ00429 178 -QDFKKDLVELLNDNNPVVASNAAAIVCEVNDYG 210 (746)
T ss_pred -cchHHHHHHHhcCCCccHHHHHHHHHHHHHHhC
Confidence 014455556666667777777777777776543
No 94
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=40.80 E-value=75 Score=37.25 Aligned_cols=83 Identities=14% Similarity=0.157 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcC-CCcchhHHh------h
Q 012466 348 AFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSE-PQNRVLLLA------Y 420 (463)
Q Consensus 348 D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~~-p~n~~~ll~------~ 420 (463)
|+--+.-+|-=|+++-.++.+--+.+-..+-.|..||.|+.|+| |+|+|--|+..|-+|.-+ |..-+.++- +
T Consensus 181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~-n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl 259 (1051)
T KOG0168|consen 181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEH-NFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVL 259 (1051)
T ss_pred ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHhhccchhheeecccchHHH
Confidence 33333333334455555543333446677889999999999998 899888888888887643 443333332 4
Q ss_pred HHHHHHHHhcc
Q 012466 421 ENAFAEILFSD 431 (463)
Q Consensus 421 E~~l~~i~~sD 431 (463)
-.+|+.|-+.|
T Consensus 260 ~~kL~~IeyiD 270 (1051)
T KOG0168|consen 260 LEKLLTIEYID 270 (1051)
T ss_pred HHhhhhhhhhH
Confidence 46777776665
No 95
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=38.18 E-value=4.4e+02 Score=28.48 Aligned_cols=154 Identities=17% Similarity=0.142 Sum_probs=84.8
Q ss_pred hhhhhhhhhcCCCCCCcH---HHHhhChhHHHHHHHhhhcc--CCChHHHHHHHHHHHHhhCCCcccc-----ccCCCc-
Q 012466 213 AVGASNIIRNFSFMPDNE---VIMAQHRHCLETVFQCIEDH--VTEDEELVTNALETIVNLAPLLDLR-----IFSSSK- 281 (463)
Q Consensus 213 a~eas~ILRNLSf~~~N~---~~LA~~~~ll~lLl~~l~~~--~~~d~eLr~~aLDil~nIA~~l~L~-----~~~~s~- 281 (463)
+.|+.-++=|+.+.-... .+-...++++.++..++... .....++..+++-.|.|+--. .+. .+..+.
T Consensus 156 l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~-~~~~l~~~~~~~~~~ 234 (446)
T PF10165_consen 156 LSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLE-CLDSLLSPKFQQSSL 234 (446)
T ss_pred HHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChH-HHhhhhcccCCcccc
Confidence 456666677776555544 45667788888887774111 122346888888888888311 111 010000
Q ss_pred -ccccccchhHHHHHHHHHhhCCCC--h--HHHHHHHHHHHhhcCCCCCc-----cccCCCc----------hHHHHHHH
Q 012466 282 -QSYIKITREKRAVEAIMGILGSPF--K--AWHCAAAELLGRLIINPDNE-----PFLLPFV----------PQIHKRLV 341 (463)
Q Consensus 282 -~~~l~i~~~~~ll~tL~~~L~S~D--r--~~~l~aLE~L~rLs~~~~Ne-----~~ll~~~----------p~i~~rlv 341 (463)
+.......-..+++.|...+.... . ..+.--+-+|.+++...... ..++|.. ..+-.|++
T Consensus 235 ~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLl 314 (446)
T PF10165_consen 235 FPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLL 314 (446)
T ss_pred cCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHH
Confidence 000011112335555555554332 1 22333344455555543321 1233221 13899999
Q ss_pred HhcCCcHHHHHHHHHHHHHHhhccCH
Q 012466 342 DLMSLPAFDAQAAAVGALYNLAEVNV 367 (463)
Q Consensus 342 ~lL~l~D~~Ll~aaLe~LY~Lt~l~~ 367 (463)
++++.++..+..++=|+||.|+.-+.
T Consensus 315 rLmt~~~~~~k~~vaellf~Lc~~d~ 340 (446)
T PF10165_consen 315 RLMTSPDPQLKDAVAELLFVLCKEDA 340 (446)
T ss_pred HHhCCCCchHHHHHHHHHHHHHhhhH
Confidence 99999999999999999999975443
No 96
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=37.29 E-value=67 Score=27.85 Aligned_cols=68 Identities=28% Similarity=0.346 Sum_probs=49.4
Q ss_pred ChhHHHHHHHhhhccCCCh-HHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHH
Q 012466 236 HRHCLETVFQCIEDHVTED-EELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAE 314 (463)
Q Consensus 236 ~~~ll~lLl~~l~~~~~~d-~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE 314 (463)
.+.++.++..++....+.. .++...+|.++...-..+++... . ...++..+...|.+++- ...|+|
T Consensus 80 ~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i----------~-~~~~l~~~~~~l~~~~~--~~~A~~ 146 (148)
T PF08389_consen 80 SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELI----------I-NSNLLNLIFQLLQSPEL--REAAAE 146 (148)
T ss_dssp HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHH----------H-SSSHHHHHHHHTTSCCC--HHHHHH
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHh----------c-cHHHHHHHHHHcCCHHH--HHHHHH
Confidence 5788888888888765333 78999999999999887776532 1 23378888888855554 778888
Q ss_pred HH
Q 012466 315 LL 316 (463)
Q Consensus 315 ~L 316 (463)
||
T Consensus 147 cl 148 (148)
T PF08389_consen 147 CL 148 (148)
T ss_dssp HH
T ss_pred hC
Confidence 76
No 97
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=37.06 E-value=4.5e+02 Score=26.47 Aligned_cols=145 Identities=17% Similarity=0.145 Sum_probs=81.5
Q ss_pred HhhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhh---CCCC----
Q 012466 233 MAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGIL---GSPF---- 305 (463)
Q Consensus 233 LA~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L---~S~D---- 305 (463)
....+++-.++++++.... -.+.+++++..+++.-+-.....+..+. .+. +...+-.++ ..++
T Consensus 59 ~~~f~Glq~Ll~KGL~Ss~-----t~e~tl~lL~~L~~~~~~~lig~~~~rl-l~~----~la~LP~ll~~~d~~~~i~~ 128 (262)
T PF14225_consen 59 WGNFEGLQPLLLKGLRSSS-----TYELTLRLLSRLTPLPDDPLIGDSQSRL-LFL----LLALLPRLLHAFDDPNPIQP 128 (262)
T ss_pred CCCchhHHHHHhCccCCCC-----cHHHHHHHHHHHhcCCCccccCCCCccH-HHH----HHHHHHHHHHHhcccccccc
Confidence 4557788888888888764 3456777778888776554444442222 111 233333333 3333
Q ss_pred hHHHHHHHHHHHhhcCCCCCccc-------------------------cCC-CchH----HHHHHHHhcCCcHHHHHHHH
Q 012466 306 KAWHCAAAELLGRLIINPDNEPF-------------------------LLP-FVPQ----IHKRLVDLMSLPAFDAQAAA 355 (463)
Q Consensus 306 r~~~l~aLE~L~rLs~~~~Ne~~-------------------------ll~-~~p~----i~~rlv~lL~l~D~~Ll~aa 355 (463)
......+.+.|+.+|.+.....+ |.+ |.|. ++.-++.+|.=.-..++..+
T Consensus 129 ~~~~~~~A~~La~~a~~~~~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~~~w~~~~~ 208 (262)
T PF14225_consen 129 DQECIEIAEALAQVAEAQGLPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENGPPWLRRKT 208 (262)
T ss_pred cHHHHHHHHHHHHHHHhCCCccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCcHHHHHHH
Confidence 24567888999999966444211 000 1121 22233444433445677777
Q ss_pred HHHHHHhhcc-CHHHHHHhhcchhHHHHHHHhhcCCC
Q 012466 356 VGALYNLAEV-NVDCRLKLASERWAIDRLLRVIKTPH 391 (463)
Q Consensus 356 Le~LY~Lt~l-~~~~~~~ia~~~~~V~~LV~Ll~~~~ 391 (463)
|.+|+.+-.. +.+.. .....|.-|+++|..+|
T Consensus 209 L~iL~~ll~~~d~~~~----~~~dlispllrlL~t~~ 241 (262)
T PF14225_consen 209 LQILKVLLPHVDMRSP----HGADLISPLLRLLQTDL 241 (262)
T ss_pred HHHHHHHhccccCCCC----cchHHHHHHHHHhCCcc
Confidence 7777777665 22211 44556788888887775
No 98
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.02 E-value=7.5e+02 Score=29.00 Aligned_cols=127 Identities=20% Similarity=0.251 Sum_probs=68.9
Q ss_pred hhHHHHHHHhhhccC-CChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHH---HHH
Q 012466 237 RHCLETVFQCIEDHV-TEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWH---CAA 312 (463)
Q Consensus 237 ~~ll~lLl~~l~~~~-~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~---l~a 312 (463)
..+++++...+.... +.+....-.||-.++||++. ++. ..+..=|..+|.|.+.... -+|
T Consensus 106 ~dl~klvin~iknDL~srn~~fv~LAL~~I~niG~r-e~~---------------ea~~~DI~KlLvS~~~~~~vkqkaA 169 (938)
T KOG1077|consen 106 SDLMKLVINSIKNDLSSRNPTFVCLALHCIANIGSR-EMA---------------EAFADDIPKLLVSGSSMDYVKQKAA 169 (938)
T ss_pred hHHHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccH-hHH---------------HHhhhhhHHHHhCCcchHHHHHHHH
Confidence 455666655443322 34445777888888998843 111 1122334466777665443 333
Q ss_pred HHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHH-HHHHhhcchhHHHHHHHhh
Q 012466 313 AELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVD-CRLKLASERWAIDRLLRVI 387 (463)
Q Consensus 313 LE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~-~~~~ia~~~~~V~~LV~Ll 387 (463)
|-.|.-+ ..+++++-+ ..-.+|++++|.-.|--+.-++..++-.|+.-+.+ -|. +.+.+|..|-+++
T Consensus 170 LclL~L~---r~spDl~~~--~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~---~~~~avs~L~riv 237 (938)
T KOG1077|consen 170 LCLLRLF---RKSPDLVNP--GEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKT---CLPLAVSRLSRIV 237 (938)
T ss_pred HHHHHHH---hcCccccCh--hhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhh---hHHHHHHHHHHHH
Confidence 3333222 224444432 12789999999877765666677777777776532 211 1244555555555
No 99
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.65 E-value=4.7e+02 Score=29.06 Aligned_cols=117 Identities=18% Similarity=0.108 Sum_probs=80.5
Q ss_pred hChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCC-hHHHHHHH
Q 012466 235 QHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPF-KAWHCAAA 313 (463)
Q Consensus 235 ~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~D-r~~~l~aL 313 (463)
+++.+-.+++...+..++.+..+|+.+.=+|+|.+.... +..+.+ ....++.+...|..++ ..+++.++
T Consensus 252 ~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P------~kv~th----~~~~ldaii~gL~D~~~~~V~leam 321 (533)
T KOG2032|consen 252 KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAP------DKVRTH----KTTQLDAIIRGLYDDLNEEVQLEAM 321 (533)
T ss_pred ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCc------HHHHHh----HHHHHHHHHHHHhcCCccHHHHHHH
Confidence 667777777777777777777899999999999996621 111111 2336777777665554 56778888
Q ss_pred HHHHhhcCCCCCc---cccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhcc
Q 012466 314 ELLGRLIINPDNE---PFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEV 365 (463)
Q Consensus 314 E~L~rLs~~~~Ne---~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l 365 (463)
-+|.++...-.|. +++++ +--|+..+.--.|.+++.++.-++=+|+.+
T Consensus 322 ~~Lt~v~~~~~~~~l~~~~l~----ialrlR~l~~se~~~~R~aa~~Lfg~L~~l 372 (533)
T KOG2032|consen 322 KCLTMVLEKASNDDLESYLLN----IALRLRTLFDSEDDKMRAAAFVLFGALAKL 372 (533)
T ss_pred HHHHHHHHhhhhcchhhhchh----HHHHHHHHHHhcChhhhhhHHHHHHHHHHH
Confidence 8888777666553 33443 444666666667888998888888777776
No 100
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=36.18 E-value=43 Score=30.58 Aligned_cols=31 Identities=19% Similarity=0.257 Sum_probs=27.8
Q ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHHhhc
Q 012466 334 PQIHKRLVDLMSLPAFDAQAAAVGALYNLAE 364 (463)
Q Consensus 334 p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~ 364 (463)
+.+++.+.++|+.+|.+++-.+|+||+.+-.
T Consensus 16 ~~l~~~~~~LL~~~d~~vQklAL~cll~~k~ 46 (141)
T PF07539_consen 16 DELYDALLRLLSSRDPEVQKLALDCLLTWKD 46 (141)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 3489999999999999999999999998755
No 101
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=35.62 E-value=5.4e+02 Score=27.52 Aligned_cols=122 Identities=18% Similarity=0.145 Sum_probs=71.0
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcCC----cHHHHHHHHHHHHHHhhccCHH-
Q 012466 294 VEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSL----PAFDAQAAAVGALYNLAEVNVD- 368 (463)
Q Consensus 294 l~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l----~D~~Ll~aaLe~LY~Lt~l~~~- 368 (463)
.+...+++.++|...+-.|+.+++-|..|-.-.++++..-|.-+++++.-... ..+++-.-||+.+...+....+
T Consensus 306 idgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeq 385 (524)
T KOG4413|consen 306 IDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQ 385 (524)
T ss_pred HHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhh
Confidence 34445677899999999999999999999888899998877655555443333 2334444444444444433211
Q ss_pred -----HHHHh-hcchhHH------HHHHHhhcC-CCCChHHHHHHHHHHHHhhcCCCcch
Q 012466 369 -----CRLKL-ASERWAI------DRLLRVIKT-PHPVPEVCRKAAMILESLVSEPQNRV 415 (463)
Q Consensus 369 -----~~~~i-a~~~~~V------~~LV~Ll~~-~~~~~em~rrAA~~L~~l~~~p~n~~ 415 (463)
.-.++ +.--.+. +-|==|+.. .+|.||+-.-|-.++-+|+..|=..-
T Consensus 386 itDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaqPWalk 445 (524)
T KOG4413|consen 386 ITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQPWALK 445 (524)
T ss_pred ccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCcHHHH
Confidence 00000 0000011 111111111 14578887878889999998884433
No 102
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=35.51 E-value=6.1e+02 Score=27.55 Aligned_cols=179 Identities=16% Similarity=0.107 Sum_probs=108.5
Q ss_pred hHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCC-hHHHHHHHHHHHhhcCCCCCccccCCC
Q 012466 254 DEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPF-KAWHCAAAELLGRLIINPDNEPFLLPF 332 (463)
Q Consensus 254 d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~D-r~~~l~aLE~L~rLs~~~~Ne~~ll~~ 332 (463)
|.-+...+.-+++.+..+=.-..+ -.....+++.|...+.+++ ...+..|+.||..|...+.-...+...
T Consensus 114 d~~i~~~a~~iLt~l~~~~~~~~~---------~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~ 184 (429)
T cd00256 114 DQFIVHMSFSILAKLACFGLAKME---------GSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLA 184 (429)
T ss_pred chhHHHHHHHHHHHHHhcCccccc---------hhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHc
Confidence 345677777777777643111100 0002235667777777654 455667789999988887765444321
Q ss_pred chHHHHHHHHhcCC--cHHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcC
Q 012466 333 VPQIHKRLVDLMSL--PAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSE 410 (463)
Q Consensus 333 ~p~i~~rlv~lL~l--~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~~ 410 (463)
- .++.++++|.- .+..++=.++=|+..||.-.. . .......+.|..|+.++.... -..+.|-+-.+|.||...
T Consensus 185 ~--~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~-~-~~~~~~~~~i~~l~~i~k~s~-KEKvvRv~l~~l~Nll~~ 259 (429)
T cd00256 185 D--GVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPH-A-AEVLKRLSLIQDLSDILKEST-KEKVIRIVLAIFRNLISK 259 (429)
T ss_pred c--CHHHHHHHHhhccccHHHHHHHHHHHHHHhccHH-H-HHhhccccHHHHHHHHHHhhh-hHHHHHHHHHHHHHHhhc
Confidence 1 34455555543 255788888888899988765 2 234456789999999998772 344899999999999986
Q ss_pred CCc----chh-HHhhHHHHHHH-H------hccchhHHHHHHHHHHHh
Q 012466 411 PQN----RVL-LLAYENAFAEI-L------FSDGRYSDTFARILYELT 446 (463)
Q Consensus 411 p~n----~~~-ll~~E~~l~~i-~------~sD~~~~~~~~~iL~~l~ 446 (463)
+.+ ... ..-.+..+..+ . .+|+...+-+..+-=.|.
T Consensus 260 ~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~ 307 (429)
T cd00256 260 RVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELK 307 (429)
T ss_pred ccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHH
Confidence 631 111 12233222221 1 368887776665444333
No 103
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=34.95 E-value=1.2e+02 Score=28.12 Aligned_cols=81 Identities=21% Similarity=0.165 Sum_probs=57.0
Q ss_pred hHHHHHHHHHhhCCCCh-HHHHHHHHHHHhhcCCCCCc-----cccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhh
Q 012466 290 EKRAVEAIMGILGSPFK-AWHCAAAELLGRLIINPDNE-----PFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLA 363 (463)
Q Consensus 290 ~~~ll~tL~~~L~S~Dr-~~~l~aLE~L~rLs~~~~Ne-----~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt 363 (463)
....+..|...|..+|. .....|..+|++|...-... +...|.+|.+++-++.++.- ....+.+|++|+.+-
T Consensus 65 ~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll 142 (165)
T PF08167_consen 65 GSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLL 142 (165)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHH
Confidence 34577888888887765 45677888888887654443 34567788888888887664 677788888888887
Q ss_pred ccCHHHHHH
Q 012466 364 EVNVDCRLK 372 (463)
Q Consensus 364 ~l~~~~~~~ 372 (463)
..-+.+++-
T Consensus 143 ~~~ptt~rp 151 (165)
T PF08167_consen 143 PHHPTTFRP 151 (165)
T ss_pred HHCCccccc
Confidence 765544443
No 104
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=33.31 E-value=1.2e+02 Score=29.23 Aligned_cols=77 Identities=21% Similarity=0.236 Sum_probs=53.1
Q ss_pred cCCcHHHHHHHHHHHHHHhhccCHHHHHHh--h------------cchhHHHHHHHhhcCC---CCC-hHHHHHHHHHHH
Q 012466 344 MSLPAFDAQAAAVGALYNLAEVNVDCRLKL--A------------SERWAIDRLLRVIKTP---HPV-PEVCRKAAMILE 405 (463)
Q Consensus 344 L~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~i--a------------~~~~~V~~LV~Ll~~~---~~~-~em~rrAA~~L~ 405 (463)
+.-++..+.+.+..+|.|+|....-+..-+ . .....++.|+.+...| ..| .+-.-..|-.+.
T Consensus 4 i~~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~ 83 (192)
T PF04063_consen 4 ITDPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLA 83 (192)
T ss_pred ecCCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHH
Confidence 334555677788889999999765443111 1 1345789999777663 112 234677899999
Q ss_pred HhhcCCCcchhHHhh
Q 012466 406 SLVSEPQNRVLLLAY 420 (463)
Q Consensus 406 ~l~~~p~n~~~ll~~ 420 (463)
|+++.|+=|.+|+-=
T Consensus 84 NlS~~~~gR~~~l~~ 98 (192)
T PF04063_consen 84 NLSQLPEGRQFFLDP 98 (192)
T ss_pred HhcCCHHHHHHHhCc
Confidence 999999999999843
No 105
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=32.12 E-value=8.3e+02 Score=28.04 Aligned_cols=153 Identities=18% Similarity=0.168 Sum_probs=90.8
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhcc-------
Q 012466 293 AVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEV------- 365 (463)
Q Consensus 293 ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l------- 365 (463)
.+..+..-+.++++.-.-+|.=++|.. +-..|++.+.+.+||.+.-|.....-+-.-..+.+-.|+|+++.-
T Consensus 367 Vl~FvEqni~~~~w~nreaavmAfGSv-m~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p 445 (858)
T COG5215 367 VLGFVEQNIRSESWANREAAVMAFGSV-MHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISP 445 (858)
T ss_pred HHHHHHHhccCchhhhHHHHHHHhhhh-hcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCc
Confidence 445555567788888888899999988 556778999999999877777777643345567788888888763
Q ss_pred -------------C-HHHHHHhhcchhHHHHHHHhhcCC--CCChHHHHHHHHHHHHhhcCC-----CcchhHHhhHHHH
Q 012466 366 -------------N-VDCRLKLASERWAIDRLLRVIKTP--HPVPEVCRKAAMILESLVSEP-----QNRVLLLAYENAF 424 (463)
Q Consensus 366 -------------~-~~~~~~ia~~~~~V~~LV~Ll~~~--~~~~em~rrAA~~L~~l~~~p-----~n~~~ll~~E~~l 424 (463)
| +++-...+.+.|.+..||.-+... |..+-|.+.=-.++-.|.+.- +|-.-.-.|+..=
T Consensus 446 ~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLg 525 (858)
T COG5215 446 CGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALG 525 (858)
T ss_pred cccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence 1 111122223344444444333111 211113333333333333322 2222234566555
Q ss_pred HHHHhccchhHHHHHHHHHHHh
Q 012466 425 AEILFSDGRYSDTFARILYELT 446 (463)
Q Consensus 425 ~~i~~sD~~~~~~~~~iL~~l~ 446 (463)
..|.++-..|+++++.++-..+
T Consensus 526 tli~~~~d~V~~~~a~~~~~~~ 547 (858)
T COG5215 526 TLILICPDAVSDILAGFYDYTS 547 (858)
T ss_pred HHHhhcchhHHHHHHHHHHHHH
Confidence 5577778889999988875544
No 106
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=32.06 E-value=61 Score=34.71 Aligned_cols=11 Identities=27% Similarity=0.510 Sum_probs=5.7
Q ss_pred CCcCCCCCCCC
Q 012466 20 AAKRGRPFGST 30 (463)
Q Consensus 20 ~~~~~~~~~~~ 30 (463)
+-+||||=|+.
T Consensus 402 ~~~~~~~~~~~ 412 (456)
T PRK10590 402 GGGRGQQQGQP 412 (456)
T ss_pred CCCCCCCCCCC
Confidence 55555554443
No 107
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=31.69 E-value=2e+02 Score=27.60 Aligned_cols=84 Identities=17% Similarity=0.175 Sum_probs=60.0
Q ss_pred HHHHHHHhcCC------cHHHHHHHHHHHHHHhhccCHHHHHHhhcchhH--HHHHHHhhcCCCCChHHHHHHHHHHHHh
Q 012466 336 IHKRLVDLMSL------PAFDAQAAAVGALYNLAEVNVDCRLKLASERWA--IDRLLRVIKTPHPVPEVCRKAAMILESL 407 (463)
Q Consensus 336 i~~rlv~lL~l------~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~--V~~LV~Ll~~~~~~~em~rrAA~~L~~l 407 (463)
.+.++++++.- +..+-..+.--+|.++|++..--..-+-.+++. |..|+-+.++. +..-.+-+|.|+-|.
T Consensus 53 ~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~--s~iRR~Gva~~IrNc 130 (192)
T PF04063_consen 53 YLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEGRQFFLDPQRYDGPLQKLLPFTEHK--SVIRRGGVAGTIRNC 130 (192)
T ss_pred HHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHHHHHHhCchhhhhHHHHHHHHhccC--cHHHHHHHHHHHHHh
Confidence 56667766665 445677778888899999865433333445555 77888777766 665667789999999
Q ss_pred hcCCCcchhHHhhH
Q 012466 408 VSEPQNRVLLLAYE 421 (463)
Q Consensus 408 ~~~p~n~~~ll~~E 421 (463)
+=+-+++..|+-=|
T Consensus 131 cFd~~~H~~LL~~~ 144 (192)
T PF04063_consen 131 CFDTDSHEWLLSDD 144 (192)
T ss_pred hccHhHHHHhcCch
Confidence 99999888777643
No 108
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=31.52 E-value=2.9e+02 Score=27.84 Aligned_cols=33 Identities=15% Similarity=0.096 Sum_probs=27.5
Q ss_pred HHHHH-HHhhCCCChHHHHHHHHHHHhhcCCCCC
Q 012466 293 AVEAI-MGILGSPFKAWHCAAAELLGRLIINPDN 325 (463)
Q Consensus 293 ll~tL-~~~L~S~Dr~~~l~aLE~L~rLs~~~~N 325 (463)
+++.| .-.+.+.|......|+||||-.|.-+.+
T Consensus 27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~ 60 (298)
T PF12719_consen 27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDKE 60 (298)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChH
Confidence 55555 4688899999999999999999998873
No 109
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=31.51 E-value=2e+02 Score=32.78 Aligned_cols=114 Identities=18% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCC--ccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHH
Q 012466 291 KRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDN--EPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVD 368 (463)
Q Consensus 291 ~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~N--e~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~ 368 (463)
+.+|.-+.+.+.|+|+-+.-+|+-+|+.++-+-.- +.+... +++++-..+.-...-.+.-++-+|+.|-++..+
T Consensus 90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~----L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~n 165 (885)
T COG5218 90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANG----LLEKLSERLFDREKAVRREAVKVLCYYQEMELN 165 (885)
T ss_pred HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHH----HHHHHHHHHhcchHHHHHHHHHHHHHHHhccCC
Q ss_pred HHHHhhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCcchhHH
Q 012466 369 CRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLL 418 (463)
Q Consensus 369 ~~~~ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~~p~n~~~ll 418 (463)
- +.-|..++..+-...|+.|+.| ..|++|.-.+..+|.+|
T Consensus 166 e-------en~~~n~l~~~vqnDPS~EVRr---~allni~vdnsT~p~Il 205 (885)
T COG5218 166 E-------ENRIVNLLKDIVQNDPSDEVRR---LALLNISVDNSTYPCIL 205 (885)
T ss_pred h-------HHHHHHHHHHHHhcCcHHHHHH---HHHHHeeeCCCcchhHH
No 110
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=31.27 E-value=2.6e+02 Score=30.23 Aligned_cols=111 Identities=16% Similarity=0.155 Sum_probs=65.8
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCccccCCCchH-HHHHHHHhcCCc-----HHHHHHHHHHHHHHhhccCHHHHHHhhc
Q 012466 302 GSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQ-IHKRLVDLMSLP-----AFDAQAAAVGALYNLAEVNVDCRLKLAS 375 (463)
Q Consensus 302 ~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~-i~~rlv~lL~l~-----D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~ 375 (463)
.++|-...+-||+||+++.-+.....-+. ... ....+++.|.-. +.+..-+.+=+|.-+|....+.+.+++.
T Consensus 42 ~~~~~~v~~EALKCL~N~lf~s~~aR~~~--~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~ 119 (446)
T PF10165_consen 42 ESPDPDVSREALKCLCNALFLSPSARQIF--VDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIE 119 (446)
T ss_pred cCCChHHHHHHHHHHHHHHhCCHHHHHHH--HHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHH
Confidence 45666778888888888766544322111 110 233445555433 4455556677777778888888888888
Q ss_pred chhHHHHHHHhhcCC--------C----C---ChHHHHHHHHHHHHhhcCCCcc
Q 012466 376 ERWAIDRLLRVIKTP--------H----P---VPEVCRKAAMILESLVSEPQNR 414 (463)
Q Consensus 376 ~~~~V~~LV~Ll~~~--------~----~---~~em~rrAA~~L~~l~~~p~n~ 414 (463)
..+.++.++..|+.. . | ..+.+.-+=+++.|+-.+....
T Consensus 120 e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~ 173 (446)
T PF10165_consen 120 EHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKS 173 (446)
T ss_pred HhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcc
Confidence 888888887766332 1 1 1123455566677775555443
No 111
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=31.27 E-value=5.2e+02 Score=29.85 Aligned_cols=147 Identities=18% Similarity=0.167 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCCch
Q 012466 255 EELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVP 334 (463)
Q Consensus 255 ~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p 334 (463)
.+.+.-+|||+.-+..+-......-. .. .+..++.++...+. .+-+..+.++|||+++-.+..+..++.....
T Consensus 558 ~~~~fPalDilRl~v~h~~~~s~~~~----~~--~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~~~ 630 (745)
T KOG0301|consen 558 VEMMFPALDILRLAVKHHSSNSLFCD----RE--EGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSRLE 630 (745)
T ss_pred HHHhhhHHHHHHHHHhccchhhhhhh----hh--hhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 35788899999988866443311000 00 02345556665554 5667789999999999888766555554444
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhcCC-CCCh--HHHHHHHHHHHHhhcCC
Q 012466 335 QIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTP-HPVP--EVCRKAAMILESLVSEP 411 (463)
Q Consensus 335 ~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~~~-~~~~--em~rrAA~~L~~l~~~p 411 (463)
++..-+++.=..++..++.+.=-+..+||-+ ..+--.+-+-...|.+.+... -|.+ |-+-|+-..|=+|...+
T Consensus 631 ~i~~~~~~~~s~~~knl~ia~atlaln~sv~----l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~ 706 (745)
T KOG0301|consen 631 SILDPVIEASSLSNKNLQIALATLALNYSVL----LIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVD 706 (745)
T ss_pred HHhhhhhhhhcccchhHHHHHHHHHHHHHHH----HHhcccccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhcccc
Confidence 4555555555556444444333333333321 111111223344444444333 1222 34556666666666666
Q ss_pred C
Q 012466 412 Q 412 (463)
Q Consensus 412 ~ 412 (463)
.
T Consensus 707 ~ 707 (745)
T KOG0301|consen 707 A 707 (745)
T ss_pred H
Confidence 4
No 112
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=30.39 E-value=4.1e+02 Score=28.53 Aligned_cols=57 Identities=18% Similarity=0.151 Sum_probs=38.4
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHH
Q 012466 293 AVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYN 361 (463)
Q Consensus 293 ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~ 361 (463)
.++.|+..|.+++..+...+.+.|+++-. |+....++.+|...|.-++.++++.+-.
T Consensus 87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i~~------------~~a~~~L~~~L~~~~p~vR~aal~al~~ 143 (410)
T TIGR02270 87 DLRSVLAVLQAGPEGLCAGIQAALGWLGG------------RQAEPWLEPLLAASEPPGRAIGLAALGA 143 (410)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHhcCCc------------hHHHHHHHHHhcCCChHHHHHHHHHHHh
Confidence 47888888988888888888888886521 2345556666666666555555555544
No 113
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=30.33 E-value=4.8e+02 Score=30.67 Aligned_cols=171 Identities=20% Similarity=0.218 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCCchH
Q 012466 256 ELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQ 335 (463)
Q Consensus 256 eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~ 335 (463)
-|+..+.|+++.+ ..|+.+. .|. ..+|+..+.|+.++++++.+.|.-++.-+..++.-.+.+..-+|.
T Consensus 475 fL~Srace~is~~--eeDfkd~--------~il--l~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~ 542 (970)
T COG5656 475 FLKSRACEFISTI--EEDFKDN--------GIL--LEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPE 542 (970)
T ss_pred chHHHHHHHHHHH--HHhcccc--------hHH--HHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhH
Confidence 4788999999999 5666642 122 448999999999999999888888888887776555556666666
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHH-hhccCHHHHHHhhcchhHHHHHHHhhcCCCCCh----------HHHHHHHH--
Q 012466 336 IHKRLVDLMSLPAFDAQAAAVGALYN-LAEVNVDCRLKLASERWAIDRLLRVIKTPHPVP----------EVCRKAAM-- 402 (463)
Q Consensus 336 i~~rlv~lL~l~D~~Ll~aaLe~LY~-Lt~l~~~~~~~ia~~~~~V~~LV~Ll~~~~~~~----------em~rrAA~-- 402 (463)
..+++..|=-.=+.|.+..++|-+-. ++.-=...+-.+| ..+|++-+++-...|.++ +|. |..
T Consensus 543 tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa--~~Lv~qFlkiaq~l~ens~d~~s~vDDKqma--asGiL 618 (970)
T COG5656 543 TMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELA--GSLVRQFLKIAQSLLENSSDTSSVVDDKQMA--ASGIL 618 (970)
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHH--HHHHHHHHHHHHHHHcCCccccccccHHHHH--HHHHH
Confidence 66666555444556777777775542 3321111212221 224444444442222221 121 222
Q ss_pred -HHHHhhcCCCcchhHHhh-HHHHHHHH--hccchhHHHHHHHH
Q 012466 403 -ILESLVSEPQNRVLLLAY-ENAFAEIL--FSDGRYSDTFARIL 442 (463)
Q Consensus 403 -~L~~l~~~p~n~~~ll~~-E~~l~~i~--~sD~~~~~~~~~iL 442 (463)
|+.+|--.=+|++..|.+ |.-+..++ +.++...|..+..+
T Consensus 619 ~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~ 662 (970)
T COG5656 619 RTIESMILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQEAL 662 (970)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 334444455788877765 33333322 23777777666554
No 114
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=30.15 E-value=2.4e+02 Score=33.59 Aligned_cols=122 Identities=16% Similarity=0.178 Sum_probs=74.8
Q ss_pred HHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhcCC
Q 012466 311 AAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTP 390 (463)
Q Consensus 311 ~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~~~ 390 (463)
-=+++|++.-.+-. .+.+.|..|.++.-+.+-|.++|.+.+.-++.++--+.......-. -+..-.|..|+++=++.
T Consensus 886 ~yl~~LshVl~~vP-~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t--~~~~Tlvp~lLsls~~~ 962 (1030)
T KOG1967|consen 886 NYLEALSHVLTNVP-KQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT--EHLSTLVPYLLSLSSDN 962 (1030)
T ss_pred HHHHHHHHHHhcCC-HHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch--HHHhHHHHHHHhcCCCC
Confidence 33566666654333 2567888888999999999999999999999999877765432211 12222344444443433
Q ss_pred CCChHHHHHHHHHHHHhhcCCCcchhHHhhHHHHHH-H--HhccchhH
Q 012466 391 HPVPEVCRKAAMILESLVSEPQNRVLLLAYENAFAE-I--LFSDGRYS 435 (463)
Q Consensus 391 ~~~~em~rrAA~~L~~l~~~p~n~~~ll~~E~~l~~-i--~~sD~~~~ 435 (463)
.-|+-+.|-+|.-.++.=-+-.=...++||...... | .+.|+++-
T Consensus 963 ~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRl 1010 (1030)
T KOG1967|consen 963 DNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRL 1010 (1030)
T ss_pred CcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHH
Confidence 334556788876654433332234467788776655 2 24677654
No 115
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=29.29 E-value=2.4e+02 Score=26.09 Aligned_cols=124 Identities=17% Similarity=0.236 Sum_probs=67.8
Q ss_pred hhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccc----------cccC--CCc----cccc---cc-chhHH-
Q 012466 234 AQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDL----------RIFS--SSK----QSYI---KI-TREKR- 292 (463)
Q Consensus 234 A~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L----------~~~~--~s~----~~~l---~i-~~~~~- 292 (463)
-++|.+++.|+.+++.. +..++|..++=.++.|+.- |- .... .+. +..+ .+ +..+.
T Consensus 6 ~~yP~LL~~L~~iLk~e--~s~~iR~E~lr~lGilGAL-DP~~~k~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ee~ 82 (160)
T PF11865_consen 6 LDYPELLDILLNILKTE--QSQSIRREALRVLGILGAL-DPYKHKSIQKSLDSKSSENSNDESTDISLPMMGISPSSEEY 82 (160)
T ss_pred HHhHHHHHHHHHHHHhC--CCHHHHHHHHHHhhhcccc-CcHHHhcccccCCccccccccccchhhHHhhccCCCchHHH
Confidence 36899999999999876 2368999999999988731 10 0000 000 0000 00 01222
Q ss_pred ----HHHHHHHhhCCCCh-HHHHHHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHh
Q 012466 293 ----AVEAIMGILGSPFK-AWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNL 362 (463)
Q Consensus 293 ----ll~tL~~~L~S~Dr-~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~L 362 (463)
...+|++.|..+.. ..+-.++.++-.+....+ ... .+++|+++..+++.+-.-+..++++.+--|..|
T Consensus 83 y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~-~~c-v~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 83 YPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLG-LKC-VPYLPQVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcC-cCc-hhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 33445555543332 223345555555543322 223 677788777777777644448888755544444
No 116
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=27.77 E-value=71 Score=34.23 Aligned_cols=29 Identities=17% Similarity=0.367 Sum_probs=16.9
Q ss_pred CCCCCCCCCCcCCCCCCCCCCCCCCCCCc
Q 012466 12 AAGGAATPAAKRGRPFGSTSGSSGGSGSA 40 (463)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (463)
++|+++|+.+-.|.++-++++++++....
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (456)
T PRK10590 398 GRGQGGGRGQQQGQPRRGEGGAKSASAKP 426 (456)
T ss_pred CCCCCCCCCCCCCCCCcCCCCCccccccC
Confidence 33333444444588888887776665544
No 117
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=27.26 E-value=2.5e+02 Score=31.69 Aligned_cols=131 Identities=18% Similarity=0.225 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHhhCC----------Ccccc--ccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHHHHHhhcC--
Q 012466 256 ELVTNALETIVNLAP----------LLDLR--IFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELLGRLII-- 321 (463)
Q Consensus 256 eLr~~aLDil~nIA~----------~l~L~--~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~-- 321 (463)
-|+...+|++.|+-. .+.|. -|..+...-...- .+.-...+......++-+++-.++.+|.++.=
T Consensus 469 fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~~L-akig~~kvl~~~NDpc~~vq~q~lQilrNftc~~ 547 (743)
T COG5369 469 FLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKFKFL-AKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDT 547 (743)
T ss_pred HHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhhhhH-HhcCHHHHHHHhcCcccccHHHHHHHHHhccccc
Confidence 379999999998865 22222 0111100000000 01112334555667777888899999988854
Q ss_pred --CCCCccccCCCchH--HHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhh
Q 012466 322 --NPDNEPFLLPFVPQ--IHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVI 387 (463)
Q Consensus 322 --~~~Ne~~ll~~~p~--i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll 387 (463)
|+.-.+++....|+ +++++++-+-.+..+..+--+=.|..+++.+.....-+-.+...++.....+
T Consensus 548 ~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil 617 (743)
T COG5369 548 SKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEIL 617 (743)
T ss_pred ccccccceeEEecChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHH
Confidence 23345678888888 8999988887765544444455566666677777777778887776655443
No 118
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=26.78 E-value=3.9e+02 Score=22.53 Aligned_cols=74 Identities=18% Similarity=0.178 Sum_probs=55.3
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHH
Q 012466 292 RAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVD 368 (463)
Q Consensus 292 ~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~ 368 (463)
..|+.....|.++.-+..--+|..|++|..... .-....|.++.-+...|..+|.=+=..++..|.+|+....+
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~---~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS---EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC---cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 356777777888888888899999999988877 11223456777777777777777778888888888877554
No 119
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=25.71 E-value=4e+02 Score=31.82 Aligned_cols=116 Identities=18% Similarity=0.141 Sum_probs=72.9
Q ss_pred HHHhhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccc-hhHHHHHHHHHhhCCCCh---
Q 012466 231 VIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKIT-REKRAVEAIMGILGSPFK--- 306 (463)
Q Consensus 231 ~~LA~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~-~~~~ll~tL~~~L~S~Dr--- 306 (463)
..+=..|.++.+|++|+..++- +.|-..|.++.-.- +... + + ++ .-+-++..++.+-.++|.
T Consensus 902 vllp~~~~LlPLLLq~Ls~~D~---~v~vstl~~i~~~l---~~~~---t----L-~t~~~~Tlvp~lLsls~~~~n~~~ 967 (1030)
T KOG1967|consen 902 VLLPQFPMLLPLLLQALSMPDV---IVRVSTLRTIPMLL---TESE---T----L-QTEHLSTLVPYLLSLSSDNDNNMM 967 (1030)
T ss_pred hhccchhhHHHHHHHhcCCCcc---chhhhHhhhhhHHH---Hhcc---c----c-chHHHhHHHHHHHhcCCCCCcchh
Confidence 3344557888888888887653 24444443333221 1110 0 0 00 011255556665566664
Q ss_pred HHHHHHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHH
Q 012466 307 AWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYN 361 (463)
Q Consensus 307 ~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~ 361 (463)
...+.||.||.-|...-.. +.+.++-|++++-++--|..+.--++.-|.++=-.
T Consensus 968 ~VR~~ALqcL~aL~~~~P~-~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 968 VVREDALQCLNALTRRLPT-KSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQN 1021 (1030)
T ss_pred HHHHHHHHHHHHHhccCCC-cccccccHHHHHHhhhccCcHHHHHHHHHHHHhhh
Confidence 4568888888888873332 47889999999999999999998898888876433
No 120
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.47 E-value=1.3e+03 Score=27.86 Aligned_cols=170 Identities=19% Similarity=0.214 Sum_probs=96.0
Q ss_pred HHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhC-CCChHHHHHHHHHHHhhcCCC-CCccccCCCch
Q 012466 257 LVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILG-SPFKAWHCAAAELLGRLIINP-DNEPFLLPFVP 334 (463)
Q Consensus 257 Lr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~-S~Dr~~~l~aLE~L~rLs~~~-~Ne~~ll~~~p 334 (463)
||.-+.++++..+ .+++++ .+ + -..+|+..+.+|. +++.++.+-|.=+|.-+..+. .+...+.+.+|
T Consensus 478 Lrarac~vl~~~~-~~df~d---~~-----~--l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp 546 (1010)
T KOG1991|consen 478 LRARACWVLSQFS-SIDFKD---PN-----N--LSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVP 546 (1010)
T ss_pred HHHHHHHHHHHHH-hccCCC---hH-----H--HHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhh
Confidence 6777777777776 223332 10 1 2347777777777 888887766666666665554 45467888899
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHH-HHHHhhccCHHHHHHhhcchhHHHHHHHhhcC-C--CCChH--------HHHHHHH
Q 012466 335 QIHKRLVDLMSLPAFDAQAAAVG-ALYNLAEVNVDCRLKLASERWAIDRLLRVIKT-P--HPVPE--------VCRKAAM 402 (463)
Q Consensus 335 ~i~~rlv~lL~l~D~~Ll~aaLe-~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~~-~--~~~~e--------m~rrAA~ 402 (463)
.+.+.+..+.---+.|-+..+++ +.+.+++-=...+..+ ..+++..-++++.. + .+..| ..|--..
T Consensus 547 ~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL--~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~T 624 (1010)
T KOG1991|consen 547 PIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVEL--CQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTIST 624 (1010)
T ss_pred HHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHH--HHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHH
Confidence 98888877766555566666665 4566665311121221 12344455566643 2 11111 2344444
Q ss_pred HHHHhhcCCCcchhHHhhHHHHHHHH--hccchhHHHHHHHH
Q 012466 403 ILESLVSEPQNRVLLLAYENAFAEIL--FSDGRYSDTFARIL 442 (463)
Q Consensus 403 ~L~~l~~~p~n~~~ll~~E~~l~~i~--~sD~~~~~~~~~iL 442 (463)
.|+++.++|+ ++...|.-++.+. +..+-+.|....++
T Consensus 625 il~s~e~~p~---vl~~le~~~l~vi~~iL~~~i~dfyeE~~ 663 (1010)
T KOG1991|consen 625 ILLSLENHPE---VLKQLEPIVLPVIGFILKNDITDFYEELL 663 (1010)
T ss_pred HHHHHhccHH---HHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4555544442 4567777777755 34555555555444
No 121
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=23.70 E-value=2.7e+02 Score=24.93 Aligned_cols=71 Identities=17% Similarity=0.241 Sum_probs=47.7
Q ss_pred HHHHHHHHhcCC-cHHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhh
Q 012466 335 QIHKRLVDLMSL-PAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLV 408 (463)
Q Consensus 335 ~i~~rlv~lL~l-~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~ 408 (463)
+++.+++.+|.- .|...+..+..=|..+...-+. .+.+...-+.=..+.+|+++ +++|+-+.|=.+++.|-
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~-gr~ii~~lg~K~~vM~Lm~h--~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPN-GRNIIEKLGAKERVMELMNH--EDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GG-GHHHHHHHSHHHHHHHHTS---SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChh-HHHHHHhcChHHHHHHHhcC--CCHHHHHHHHHHHHHHH
Confidence 489999999954 4555555555556666666443 35566666666777788876 59999888877776654
No 122
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=23.39 E-value=4.3e+02 Score=31.41 Aligned_cols=118 Identities=14% Similarity=0.132 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCcc--ccCCCc
Q 012466 256 ELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEP--FLLPFV 333 (463)
Q Consensus 256 eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~--~ll~~~ 333 (463)
.+-+++|..++.|+.. ++..+ + .--.+......|....-..++.||-+-.+.|.+-.-++ ++.+
T Consensus 270 DvAEQ~LqALE~iSR~---------H~~Ai-L--~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~e-- 335 (1051)
T KOG0168|consen 270 DVAEQSLQALEKISRR---------HPKAI-L--QAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVME-- 335 (1051)
T ss_pred HHHHHHHHHHHHHHhh---------ccHHH-H--hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHH--
Confidence 4677888888888733 11111 0 00023333444444444567788888888888865442 2333
Q ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHHhhcc---CHHHHHHhhcchhHHHHHHHhhcCC
Q 012466 334 PQIHKRLVDLMSLPAFDAQAAAVGALYNLAEV---NVDCRLKLASERWAIDRLLRVIKTP 390 (463)
Q Consensus 334 p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l---~~~~~~~ia~~~~~V~~LV~Ll~~~ 390 (463)
...-+..+|...|...++.+.-|+..++.. +.+-...+|+ +++|.+.+.||...
T Consensus 336 --alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s-~dLi~~~~qLlsvt 392 (1051)
T KOG0168|consen 336 --ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCS-HDLITNIQQLLSVT 392 (1051)
T ss_pred --HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhc-hhHHHHHHHHHhcC
Confidence 334567788889999999999999988886 4555455555 56898888888776
No 123
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=23.30 E-value=1.6e+02 Score=25.73 Aligned_cols=51 Identities=25% Similarity=0.418 Sum_probs=43.0
Q ss_pred chhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCcchhHHhhHHHHHHHH
Q 012466 376 ERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLLAYENAFAEIL 428 (463)
Q Consensus 376 ~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~~p~n~~~ll~~E~~l~~i~ 428 (463)
..|.|+.||+=|-+. +++++..|-..|......+++...++.+.+.|..+.
T Consensus 6 ~~w~i~lLv~QL~D~--~~~V~~~A~~iL~e~c~~~~~le~~v~~~p~l~~L~ 56 (115)
T PF14663_consen 6 EDWGIELLVTQLYDP--SPEVVAAALEILEEACEDKEYLEYLVSLRPSLDHLG 56 (115)
T ss_pred HHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhchhhHHHHHHcCcHHHHHH
Confidence 478899999877666 679999999999999999988888888888886654
No 124
>PF08958 DUF1871: Domain of unknown function (DUF1871); InterPro: IPR015053 This set of hypothetical proteins is produced by prokaryotes pertaining to the Bacillus genus. ; PDB: 1U84_A.
Probab=23.00 E-value=77 Score=26.33 Aligned_cols=58 Identities=21% Similarity=0.252 Sum_probs=44.4
Q ss_pred ccccccCcccHHHHHHHHh-cCCchhHHHHHHHHHhhhcccccccccCCCCCcCccchHHHHHHhh
Q 012466 55 QVHSSFADQNHKRIVLALQ-SGLKSELTWALNTLTLLSFKEKDDMRKDATPLAKIPGLLDALLQVI 119 (463)
Q Consensus 55 ~~~~~~~~~~y~RL~LSL~-SGLpnEvdfALN~LtllS~e~~~~lr~d~~~L~~~PgLldALl~v~ 119 (463)
+.+.++.++.-++++.++. ..-|+++.=++...-..||++. +|+++|-.++..++.+=
T Consensus 14 ~~g~deY~~Ei~~Iv~~v~~~~~~~~LA~~Iq~If~~SF~e~-------~~~e~C~~iA~klL~ik 72 (79)
T PF08958_consen 14 GLGEDEYDTEINDIVQAVHENDDPEELAKKIQSIFEFSFGEW-------LPIEECEEIAEKLLAIK 72 (79)
T ss_dssp SS-GGGGHHHHHHHHHHHTT-S-HHHHHHHHHHHHHHHHSS----------HHHHHHHHHHHHHHH
T ss_pred cCCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHccc-------CCHHHHHHHHHHHHhHh
Confidence 3445667788899999998 7799999999999999999965 47899999998888544
No 125
>KOG4037 consensus Photoreceptor synaptic vesicle protein HRG4/UNC-119 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=22.92 E-value=1.1e+02 Score=29.40 Aligned_cols=20 Identities=10% Similarity=0.101 Sum_probs=9.1
Q ss_pred CCCcCCCCCCCCCCCCCCCC
Q 012466 19 PAAKRGRPFGSTSGSSGGSG 38 (463)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~ 38 (463)
..+.--+|=+++.+||.+++
T Consensus 24 s~s~ip~p~~~~~s~~~~~~ 43 (240)
T KOG4037|consen 24 SVSPIPQPPAESESGSESEP 43 (240)
T ss_pred CCCCCCCCCcccCCCCCCCC
Confidence 33334455555544444333
No 126
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=22.82 E-value=4.5e+02 Score=31.35 Aligned_cols=109 Identities=15% Similarity=0.127 Sum_probs=71.7
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhh
Q 012466 295 EAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLA 374 (463)
Q Consensus 295 ~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia 374 (463)
.++.....+.....-++|.|+++..| -...+.++.|.+++-+.++.+-...+.+...+|.|++-..++.+. .-+
T Consensus 494 ~~v~~l~~~~~~~~ki~a~~~~~~~~----~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef--~as 567 (1005)
T KOG2274|consen 494 ATVNALTMDVPPPVKISAVRAFCGYC----KVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEF--AAS 567 (1005)
T ss_pred HHHHhhccCCCCchhHHHHHHHHhcc----CceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhh--hhh
Confidence 33444444445566789999999998 345788999999999999999888999999999999999998654 222
Q ss_pred cchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhc
Q 012466 375 SERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVS 409 (463)
Q Consensus 375 ~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~ 409 (463)
...........+...-...|.++--+=.++..|..
T Consensus 568 ~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q 602 (1005)
T KOG2274|consen 568 MESKICPLTINLFLKYSEDPQVASLAQDLFEELLQ 602 (1005)
T ss_pred hhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 33444444444442221122334444444444444
No 127
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=22.54 E-value=9.3e+02 Score=25.45 Aligned_cols=216 Identities=13% Similarity=0.133 Sum_probs=121.0
Q ss_pred hhhhhhcCCCCCCcHHHHhhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHH
Q 012466 216 ASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVE 295 (463)
Q Consensus 216 as~ILRNLSf~~~N~~~LA~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~ 295 (463)
+-.|+|=+.-.+...+.+-+.. +--|+..++......+.| |++||-..-.+. ++.. .+. .++ .-+..
T Consensus 45 ~yRilRy~i~d~~~l~~~~~l~-id~~ii~SL~~~~~~~~E-R~QALkliR~~l---~~~~----~~~--~~~--~~vvr 111 (371)
T PF14664_consen 45 GYRILRYLISDEESLQILLKLH-IDIFIIRSLDRDNKNDVE-REQALKLIRAFL---EIKK----GPK--EIP--RGVVR 111 (371)
T ss_pred HHHHHHHHHcCHHHHHHHHHcC-CchhhHhhhcccCCChHH-HHHHHHHHHHHH---HhcC----Ccc--cCC--HHHHH
Confidence 6788888888888877777643 455556666554333222 555555554443 2211 011 122 34788
Q ss_pred HHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhhc
Q 012466 296 AIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLAS 375 (463)
Q Consensus 296 tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~ 375 (463)
+|..+..+++......|+|+|+-|+..+.---.-+..+.-+.+.+++ .-.++.+.++..+..+-.-.. + ++-..
T Consensus 112 alvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d----~~~~~~~~l~~~lL~lLd~p~-t-R~yl~ 185 (371)
T PF14664_consen 112 ALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALID----GSFSISESLLDTLLYLLDSPR-T-RKYLR 185 (371)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHh----ccHhHHHHHHHHHHHHhCCcc-h-hhhhc
Confidence 89888888888899999999999998866322222333334444444 222366666666655544322 2 12222
Q ss_pred chhHHHHHHHhhcCCC-----CCh--HHHHHHHHHHHHhhcCCC-----cchhHHhhHHHHHHHHhccchhHHHHHHHHH
Q 012466 376 ERWAIDRLLRVIKTPH-----PVP--EVCRKAAMILESLVSEPQ-----NRVLLLAYENAFAEILFSDGRYSDTFARILY 443 (463)
Q Consensus 376 ~~~~V~~LV~Ll~~~~-----~~~--em~rrAA~~L~~l~~~p~-----n~~~ll~~E~~l~~i~~sD~~~~~~~~~iL~ 443 (463)
..--++.|++-.+..| .+. +.++.++..+..+=|.=. ...-+-+..+.+.-+-+-.+++.+.+-++||
T Consensus 186 ~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~ 265 (371)
T PF14664_consen 186 PGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLF 265 (371)
T ss_pred CCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2223666665554442 233 455556665555443320 0001123444444455567789999999999
Q ss_pred HHhcCCC
Q 012466 444 ELTSRPN 450 (463)
Q Consensus 444 ~l~~~~~ 450 (463)
++=+-+.
T Consensus 266 dllrik~ 272 (371)
T PF14664_consen 266 DLLRIKP 272 (371)
T ss_pred HHHCCCC
Confidence 9866443
No 128
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.48 E-value=1.6e+02 Score=35.11 Aligned_cols=57 Identities=11% Similarity=0.167 Sum_probs=33.2
Q ss_pred HHHHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHH-HHHHHHHHHHHHhhcc
Q 012466 309 HCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAF-DAQAAAVGALYNLAEV 365 (463)
Q Consensus 309 ~l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~-~Ll~aaLe~LY~Lt~l 365 (463)
..++|+++..+-..-+|.+-++..+..++-.++.....+|. |.-+-++++.|.+|.+
T Consensus 615 A~GiL~Ti~Til~s~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~ 672 (1010)
T KOG1991|consen 615 ASGILRTISTILLSLENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFL 672 (1010)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhh
Confidence 46667777776666666654444443333344444444444 6666667777776665
No 129
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=21.73 E-value=6.2e+02 Score=29.82 Aligned_cols=170 Identities=18% Similarity=0.172 Sum_probs=92.2
Q ss_pred hhhhhhcCCCCCCcHHHHhhChhHHHHH---HHhhhccC-CChHHHHHHHHHHHHhhCCCccccccCCCcccccccc---
Q 012466 216 ASNIIRNFSFMPDNEVIMAQHRHCLETV---FQCIEDHV-TEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKIT--- 288 (463)
Q Consensus 216 as~ILRNLSf~~~N~~~LA~~~~ll~lL---l~~l~~~~-~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~--- 288 (463)
+..+||-.+-++.|.+.|.+...+-.+| ..|+.... ..-.++-+..|+|++.|...-.-......... ...+
T Consensus 142 llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE~ll~ea~~~~~~~~~~~-~~~~~~~ 220 (802)
T PF13764_consen 142 LLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIESLLSEANSSSSSESKSS-SSLSGSE 220 (802)
T ss_pred HHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHhhhhhhhcccc-ccccccc
Confidence 5788999999999999999854433333 34444422 12256888888888888766543222111100 1111
Q ss_pred -hhHHHHHHHHHhhCCC----ChHHHHHHHHHHHhhcCCCCCc-cccCCCchHHHHHHHHhcCCcH---HHHHHHHHHHH
Q 012466 289 -REKRAVEAIMGILGSP----FKAWHCAAAELLGRLIINPDNE-PFLLPFVPQIHKRLVDLMSLPA---FDAQAAAVGAL 359 (463)
Q Consensus 289 -~~~~ll~tL~~~L~S~----Dr~~~l~aLE~L~rLs~~~~Ne-~~ll~~~p~i~~rlv~lL~l~D---~~Ll~aaLe~L 359 (463)
....-+..+...+.++ .......-+++|..|+-.+... +.+.+ .|...++|=-..+ .+- ...||++
T Consensus 221 ~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~----~F~p~l~f~~~D~~~~~~~-~~~Le~F 295 (802)
T PF13764_consen 221 EQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE----HFKPYLDFDKFDEEHSPDE-QFKLECF 295 (802)
T ss_pred cccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH----HHHHhcChhhcccccCchH-HHHHHHH
Confidence 0233455556655544 3344555567777776665431 11111 1122211111110 011 3558888
Q ss_pred HHhhcc------CHHHHHHhhcchhHHHHHHHhhcCCCC
Q 012466 360 YNLAEV------NVDCRLKLASERWAIDRLLRVIKTPHP 392 (463)
Q Consensus 360 Y~Lt~l------~~~~~~~ia~~~~~V~~LV~Ll~~~~~ 392 (463)
+.++.. |...+..| -.+|.|...+.+|....|
T Consensus 296 ~~i~~~I~~~~~G~~LK~~I-l~~GIv~~a~~YL~~~~P 333 (802)
T PF13764_consen 296 CEIAEGIPNNSNGNRLKDKI-LESGIVQDAIDYLLKHFP 333 (802)
T ss_pred HHHHhcCCCCCchHHHHHHH-HHhhHHHHHHHHHHHhCc
Confidence 888875 34444444 377888888888866655
No 130
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=21.55 E-value=1e+03 Score=25.55 Aligned_cols=54 Identities=20% Similarity=0.027 Sum_probs=28.6
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHH
Q 012466 294 VEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGAL 359 (463)
Q Consensus 294 l~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~L 359 (463)
+..+...|.++|-.+...|+++|+++...+. ...+...+...|.+++.+++..|
T Consensus 149 ~~~L~~~L~d~d~~Vra~A~raLG~l~~~~a------------~~~L~~al~d~~~~VR~aA~~al 202 (410)
T TIGR02270 149 GPALEAALTHEDALVRAAALRALGELPRRLS------------ESTLRLYLRDSDPEVRFAALEAG 202 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhhccccc------------hHHHHHHHcCCCHHHHHHHHHHH
Confidence 3444455555555555666666666543211 11233445566666666666665
No 131
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=21.55 E-value=2.3e+02 Score=27.07 Aligned_cols=74 Identities=12% Similarity=0.078 Sum_probs=54.5
Q ss_pred HHHHHHHhhCCCCh-HHHHHHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccC
Q 012466 293 AVEAIMGILGSPFK-AWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVN 366 (463)
Q Consensus 293 ll~tL~~~L~S~Dr-~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~ 366 (463)
+..+|...|..+.. ..+...++||+-|..+-.=..+-.+.++.++..+..++...|.+.+.++|-++-.+.+..
T Consensus 102 lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 102 LHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 56666667766644 556777899999988765444444566667778888888899999999998888777653
No 132
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=21.31 E-value=3.3e+02 Score=33.50 Aligned_cols=92 Identities=18% Similarity=0.186 Sum_probs=59.2
Q ss_pred HHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHHHHHhhc
Q 012466 241 ETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELLGRLI 320 (463)
Q Consensus 241 ~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs 320 (463)
.++.-|+..-. ..+.|..+|+.+..++.+++=... -|+.+..+..++..++--+...|||+|+++-
T Consensus 425 s~lts~IR~lk--~~~tK~~ALeLl~~lS~~i~de~~------------LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L 490 (1431)
T KOG1240|consen 425 SVLTSCIRALK--TIQTKLAALELLQELSTYIDDEVK------------LDRVLPYFVHLLMDSEADVRATALETLTELL 490 (1431)
T ss_pred HHHHHHHHhhh--cchhHHHHHHHHHHHhhhcchHHH------------HhhhHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 34444544332 235899999999999988764311 3667888889999898889999999999985
Q ss_pred CCCCCccccC-CCchH-HHHHHHHhcCC
Q 012466 321 INPDNEPFLL-PFVPQ-IHKRLVDLMSL 346 (463)
Q Consensus 321 ~~~~Ne~~ll-~~~p~-i~~rlv~lL~l 346 (463)
..-.-.+-.- ...|. ++.++-+++.-
T Consensus 491 ~~Vr~~~~~daniF~eYlfP~L~~l~~d 518 (1431)
T KOG1240|consen 491 ALVRDIPPSDANIFPEYLFPHLNHLLND 518 (1431)
T ss_pred hhccCCCcccchhhHhhhhhhhHhhhcc
Confidence 4421111111 11222 56666666655
No 133
>PF03542 Tuberin: Tuberin; InterPro: IPR018515 Initiation of eukaryotic mRNA transcription requires melting of promoter DNA with the help of the general transcription factors TFIIE and TFIIH. In higher eukaryotes, the general transcription factor TFIIE consists of two subunits: the large alpha subunit (IPR002853 from INTERPRO) and the small beta (IPR003166 from INTERPRO). TFIIE beta has been found to bind to the region where the promoter starts to open to be single-stranded upon transcription initiation by RNA polymerase II. The approximately 120-residue central core domain of TFIIE beta plays a role in double-stranded DNA binding of TFIIE []. The TFIIE beta central core DNA-binding domain consists of three helices with a beta hairpin at the C terminus, resembling the winged helix proteins. It shows a novel double-stranded DNA-binding activity where the DNA-binding surface locates on the opposite side to the previously reported winged helix motif by forming a positively charged furrow []. This domain is found in Tuberin proteins. ; GO: 0005096 GTPase activator activity, 0043547 positive regulation of GTPase activity
Probab=20.78 E-value=2.5e+02 Score=29.65 Aligned_cols=131 Identities=14% Similarity=0.110 Sum_probs=79.0
Q ss_pred hhhhhhhhcCCCCCCcHHHHhhChhHHHHHHHhhhccC-----------CChHHHHHHHHHHHHhhCCCccccccCCCcc
Q 012466 214 VGASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHV-----------TEDEELVTNALETIVNLAPLLDLRIFSSSKQ 282 (463)
Q Consensus 214 ~eas~ILRNLSf~~~N~~~LA~~~~ll~lLl~~l~~~~-----------~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~ 282 (463)
......|.|-.+..++. -..+...|+..+.+.. -...++......+|..+.+|=+.-+. +
T Consensus 164 ~hLp~qL~Nk~Lf~~~~-----I~~L~~~Lc~~i~d~~~~~~l~~~p~~~~~~D~~~~~~~~Ls~LisYh~~~~k--~-- 234 (356)
T PF03542_consen 164 VHLPSQLSNKALFLGAD-----IDQLRNALCSMICDRSFLESLSNKPTGFKRADLQVCVFPVLSALISYHSHFSK--Q-- 234 (356)
T ss_pred HHHHHHhhhhHHhccCc-----HHHHHHHHHHHHhcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCH--h--
Confidence 34556677776666554 2344455555443221 11357888888999998877543211 1
Q ss_pred cccccchhHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHh
Q 012466 283 SYIKITREKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNL 362 (463)
Q Consensus 283 ~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~L 362 (463)
.++.+..++..+|.+. ....|+.+|+-.|.--. +.+.+.+|+++.++-...+.+.. -.-.||||..|
T Consensus 235 ------~qd~iV~~l~~GL~s~---~a~~CI~aLtic~~EmP--~s~~k~L~~iL~kLs~i~tt~~~--Ai~ILEFLs~L 301 (356)
T PF03542_consen 235 ------EQDEIVRALESGLGSK---TAKPCIHALTICCYEMP--DSMKKLLPSILLKLSKISTTPNM--AIHILEFLSSL 301 (356)
T ss_pred ------HHHHHHHHHHHHhccC---cHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHhhccchhh--HHHHHHHHHHH
Confidence 2577888888887662 12334555444333222 34556677787777666665553 34699999999
Q ss_pred hccC
Q 012466 363 AEVN 366 (463)
Q Consensus 363 t~l~ 366 (463)
+.+-
T Consensus 302 ~~lP 305 (356)
T PF03542_consen 302 SRLP 305 (356)
T ss_pred hhCc
Confidence 9886
No 134
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=20.71 E-value=64 Score=27.96 Aligned_cols=62 Identities=19% Similarity=0.162 Sum_probs=39.1
Q ss_pred HHHHHHHhhCCCC----hHHHHHHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHH
Q 012466 293 AVEAIMGILGSPF----KAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGAL 359 (463)
Q Consensus 293 ll~tL~~~L~S~D----r~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~L 359 (463)
+++.+...+.... ......+|+|+.....--+-+. +.. ..+++.++++| ++.++++.|+|||
T Consensus 83 i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~-i~~--~~~l~~~~~~l--~~~~~~~~A~~cl 148 (148)
T PF08389_consen 83 ILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIEL-IIN--SNLLNLIFQLL--QSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHH-HHS--SSHHHHHHHHT--TSCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHH-hcc--HHHHHHHHHHc--CCHHHHHHHHHhC
Confidence 4555555554333 5678899999999877333222 222 12778888887 4455588998886
No 135
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.55 E-value=8.1e+02 Score=28.88 Aligned_cols=144 Identities=17% Similarity=0.146 Sum_probs=79.7
Q ss_pred hChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHH
Q 012466 235 QHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAE 314 (463)
Q Consensus 235 ~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE 314 (463)
+|...+.||...+... ---|.+.++.|.+..|..+.+=. .-+.++-|++.+.+.. ..-.+.+
T Consensus 388 k~~~~m~FL~~~Lr~e--Gg~e~K~aivd~Ii~iie~~pds--------------Ke~~L~~LCefIEDce--~~~i~~r 449 (865)
T KOG1078|consen 388 KHTVMMNFLSNMLREE--GGFEFKRAIVDAIIDIIEENPDS--------------KERGLEHLCEFIEDCE--FTQIAVR 449 (865)
T ss_pred HHHHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHHhCcch--------------hhHHHHHHHHHHHhcc--chHHHHH
Confidence 3444555555555442 22467888888887777432211 1224566666554332 2335566
Q ss_pred HHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhcCCCCCh
Q 012466 315 LLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVP 394 (463)
Q Consensus 315 ~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~~~~~~~ 394 (463)
+|..|..--.+...- ...++.+.+.+-+...-.+.+++.+|+.+...++.. .+...-.|-|.+.+. .-
T Consensus 450 ILhlLG~EgP~a~~P----skyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l------~~sI~vllkRc~~D~--Dd 517 (865)
T KOG1078|consen 450 ILHLLGKEGPKAPNP----SKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVL------LPSILVLLKRCLNDS--DD 517 (865)
T ss_pred HHHHHhccCCCCCCc----chhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCc------cccHHHHHHHHhcCc--hH
Confidence 666665443332211 224455555566888899999999999998443322 222334445666655 34
Q ss_pred HHHHHHHHHHHHhh
Q 012466 395 EVCRKAAMILESLV 408 (463)
Q Consensus 395 em~rrAA~~L~~l~ 408 (463)
|+--||+-.|.++-
T Consensus 518 evRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 518 EVRDRATFYLKNLE 531 (865)
T ss_pred HHHHHHHHHHHHhh
Confidence 45555555555554
No 136
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=20.55 E-value=6.1e+02 Score=22.56 Aligned_cols=86 Identities=20% Similarity=0.183 Sum_probs=63.2
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhhccC-HHHHHHhhcchhHHHHHHHhhcCCCCChH--HHHHHHHHHHHhhcCCC
Q 012466 336 IHKRLVDLMSLPAFDAQAAAVGALYNLAEVN-VDCRLKLASERWAIDRLLRVIKTPHPVPE--VCRKAAMILESLVSEPQ 412 (463)
Q Consensus 336 i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~-~~~~~~ia~~~~~V~~LV~Ll~~~~~~~e--m~rrAA~~L~~l~~~p~ 412 (463)
..+.|..-|..++...+..||.+|=.+..-. ......++..+ .++.|+++++.....++ +.+|+...+...+..=.
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~-fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~ 121 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKE-FLDELVKLIKSKKTDPETPVKEKILELLQEWAEAFK 121 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHH-HHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHH-HHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHC
Confidence 6666777777788888999999999988874 66766677665 78999999977644443 78888888887776655
Q ss_pred cchhHHhhHH
Q 012466 413 NRVLLLAYEN 422 (463)
Q Consensus 413 n~~~ll~~E~ 422 (463)
+.+.+-.+..
T Consensus 122 ~~~~~~~i~~ 131 (140)
T PF00790_consen 122 SDPELSLIQD 131 (140)
T ss_dssp TSTTGHHHHH
T ss_pred CCCCchHHHH
Confidence 5555544433
No 137
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=20.09 E-value=1.4e+02 Score=32.80 Aligned_cols=25 Identities=12% Similarity=0.117 Sum_probs=10.6
Q ss_pred CCCCCCCCCCCCCCCCCccCCCCCC
Q 012466 23 RGRPFGSTSGSSGGSGSAADSAAPT 47 (463)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (463)
++--||+.+|++..+.-+..+.+++
T Consensus 80 ~~gg~~~~~g~gsscnP~~Sa~S~~ 104 (641)
T KOG3915|consen 80 GNGGGGGGGGGGSSCNPNLSAASNG 104 (641)
T ss_pred CCCCCCCCCCCccccCCcccccCCC
Confidence 4444555544444333333333333
Done!