Query 012466
Match_columns 463
No_of_seqs 132 out of 153
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 09:59:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012466.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012466hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hxt_A De novo protein OR329; 98.9 2.4E-08 8.3E-13 92.4 14.9 219 216-453 22-247 (252)
2 3nmw_A APC variant protein; AR 98.7 7.5E-08 2.6E-12 98.0 13.7 222 216-448 52-293 (354)
3 4db8_A Armadillo-repeat protei 98.7 1.8E-07 6E-12 87.5 14.9 177 216-410 74-252 (252)
4 4db6_A Armadillo repeat protei 98.7 1.2E-07 4E-12 86.5 12.3 177 216-410 32-210 (210)
5 4hxt_A De novo protein OR329; 98.7 1.2E-07 4.3E-12 87.6 12.1 182 216-415 64-247 (252)
6 3nmz_A APC variant protein; pr 98.7 2.1E-07 7.2E-12 98.0 14.5 224 214-448 166-409 (458)
7 4db8_A Armadillo-repeat protei 98.6 4.7E-07 1.6E-11 84.6 14.9 213 217-447 33-251 (252)
8 3nmw_A APC variant protein; AR 98.6 4.2E-07 1.4E-11 92.5 13.8 225 215-454 103-341 (354)
9 4db6_A Armadillo repeat protei 98.6 7.2E-07 2.4E-11 81.2 13.7 192 239-447 13-209 (210)
10 3nmz_A APC variant protein; pr 98.5 7.2E-07 2.5E-11 93.9 13.1 224 215-453 219-456 (458)
11 2z6h_A Catenin beta-1, beta-ca 98.4 3.3E-06 1.1E-10 90.9 16.7 218 216-449 34-255 (644)
12 1jdh_A Beta-catenin; beta-cate 98.4 3.6E-06 1.2E-10 86.7 15.7 217 216-449 37-258 (529)
13 2z6h_A Catenin beta-1, beta-ca 98.4 1.1E-05 3.8E-10 86.9 18.9 277 64-449 15-294 (644)
14 3l6x_A Catenin delta-1; cateni 98.3 1E-05 3.4E-10 87.7 15.4 173 236-420 306-487 (584)
15 2z6g_A B-catenin; FULL-length, 98.2 8E-06 2.7E-10 90.7 14.3 218 216-449 170-391 (780)
16 4b8j_A Importin subunit alpha- 98.2 2.1E-05 7.2E-10 81.9 16.1 215 216-448 138-359 (528)
17 1xm9_A Plakophilin 1; armadill 98.2 1.2E-05 4E-10 83.7 13.6 152 294-452 4-177 (457)
18 2jdq_A Importin alpha-1 subuni 98.2 3.4E-05 1.1E-09 77.5 15.9 216 216-448 127-348 (450)
19 1xm9_A Plakophilin 1; armadill 98.2 9E-06 3.1E-10 84.5 11.8 189 242-447 6-220 (457)
20 1wa5_B Importin alpha subunit; 98.2 2.1E-05 7.1E-10 82.2 14.5 215 216-448 193-413 (530)
21 1jdh_A Beta-catenin; beta-cate 98.1 1.3E-05 4.6E-10 82.4 12.2 183 216-418 206-394 (529)
22 4b8j_A Importin subunit alpha- 98.1 2.8E-05 9.7E-10 80.9 14.5 216 216-448 180-401 (528)
23 3tt9_A Plakophilin-2; cell adh 98.1 1.1E-05 3.7E-10 77.8 9.3 149 294-448 10-181 (233)
24 2jdq_A Importin alpha-1 subuni 98.1 0.00014 4.9E-09 72.9 17.7 215 216-448 85-306 (450)
25 3ul1_B Importin subunit alpha- 98.0 2.2E-05 7.5E-10 82.5 11.5 220 216-449 163-389 (510)
26 3tpo_A Importin subunit alpha- 98.0 3E-05 1E-09 81.7 12.3 219 216-449 182-408 (529)
27 3tpo_A Importin subunit alpha- 98.0 0.00012 4E-09 77.1 16.1 217 215-449 139-366 (529)
28 1wa5_B Importin alpha subunit; 98.0 0.00015 5.1E-09 75.7 16.3 215 216-448 151-371 (530)
29 3now_A UNC-45 protein, SD10334 98.0 4.3E-05 1.5E-09 85.7 12.8 200 231-447 489-694 (810)
30 1xqr_A HSPBP1 protein; armadil 97.9 1.6E-05 5.4E-10 79.0 7.6 217 215-449 59-289 (296)
31 3opb_A SWI5-dependent HO expre 97.9 0.00017 5.8E-09 80.3 15.9 203 238-444 545-775 (778)
32 3l6x_A Catenin delta-1; cateni 97.9 5.5E-05 1.9E-09 82.0 11.7 151 293-449 49-223 (584)
33 3ul1_B Importin subunit alpha- 97.9 2.3E-05 7.8E-10 82.4 8.2 211 216-443 210-426 (510)
34 2z6g_A B-catenin; FULL-length, 97.8 8.2E-05 2.8E-09 82.6 12.2 213 216-452 135-353 (780)
35 1xqr_A HSPBP1 protein; armadil 97.7 0.00032 1.1E-08 69.5 13.6 179 255-448 54-239 (296)
36 3opb_A SWI5-dependent HO expre 97.7 0.00075 2.6E-08 75.2 17.4 194 238-446 457-682 (778)
37 3tt9_A Plakophilin-2; cell adh 97.7 0.00017 5.8E-09 69.4 10.4 117 336-455 9-132 (233)
38 3now_A UNC-45 protein, SD10334 97.7 0.00013 4.5E-09 81.8 10.6 184 215-413 600-786 (810)
39 3ltm_A Alpha-REP4; protein eng 97.3 0.014 4.8E-07 52.8 17.4 160 237-452 49-208 (211)
40 3ltj_A Alpharep-4; protein eng 97.1 0.035 1.2E-06 49.7 18.0 156 237-448 44-199 (201)
41 3ltm_A Alpha-REP4; protein eng 97.1 0.015 5E-07 52.7 15.2 127 233-408 14-140 (211)
42 3ltj_A Alpharep-4; protein eng 96.6 0.19 6.4E-06 44.9 18.3 124 237-409 13-136 (201)
43 3b2a_A TON_1937, putative unch 96.3 0.22 7.4E-06 48.4 17.3 183 236-449 31-220 (265)
44 4fdd_A Transportin-1; heat rep 96.2 0.074 2.5E-06 58.6 16.0 198 209-428 107-304 (852)
45 3grl_A General vesicular trans 96.2 0.0086 2.9E-07 65.4 8.1 196 216-418 42-251 (651)
46 4fdd_A Transportin-1; heat rep 95.7 0.33 1.1E-05 53.4 18.1 194 234-448 41-245 (852)
47 3grl_A General vesicular trans 95.6 0.12 4.1E-06 56.5 13.8 155 256-426 37-212 (651)
48 1oyz_A Hypothetical protein YI 95.6 0.21 7E-06 47.0 13.9 118 253-408 103-220 (280)
49 2qk2_A LP04448P; mini spindles 95.4 0.27 9.1E-06 45.7 14.0 154 236-413 54-209 (242)
50 1oyz_A Hypothetical protein YI 94.8 1.6 5.6E-05 40.7 17.7 119 302-446 101-220 (280)
51 2qk1_A Protein STU2; STU2P, XM 94.7 0.89 3E-05 43.2 15.7 166 236-415 58-226 (249)
52 2vgl_B AP-2 complex subunit be 94.2 1.6 5.6E-05 46.2 17.7 184 240-447 123-311 (591)
53 1b3u_A Protein (protein phosph 94.1 0.24 8.2E-06 50.9 10.9 149 237-411 163-312 (588)
54 1b3u_A Protein (protein phosph 94.1 0.52 1.8E-05 48.3 13.2 168 255-445 416-585 (588)
55 3b2a_A TON_1937, putative unch 94.0 0.26 8.9E-06 47.8 10.0 111 254-384 128-240 (265)
56 2qk2_A LP04448P; mini spindles 92.9 1.8 6.3E-05 39.9 13.7 171 255-448 29-206 (242)
57 1u6g_C TIP120 protein, CAND1; 92.8 0.43 1.5E-05 54.7 11.2 155 238-412 48-207 (1230)
58 1w63_A Adapter-related protein 92.7 0.52 1.8E-05 50.5 11.0 160 254-447 326-490 (618)
59 1te4_A Conserved protein MTH18 92.1 0.68 2.3E-05 38.9 8.8 87 294-406 44-130 (131)
60 2bpt_A Importin beta-1 subunit 91.5 4.6 0.00016 43.5 16.8 156 238-410 95-254 (861)
61 1w63_A Adapter-related protein 91.5 1.4 4.7E-05 47.2 12.5 94 253-368 119-212 (618)
62 1ibr_B P95, importin beta-1 su 91.3 1.8 6.3E-05 42.7 12.4 115 293-410 129-247 (462)
63 2vgl_A Adaptor protein complex 91.3 0.67 2.3E-05 50.0 9.8 111 253-390 341-453 (621)
64 2vgl_B AP-2 complex subunit be 91.2 1.9 6.4E-05 45.7 13.2 131 253-411 61-191 (591)
65 1u6g_C TIP120 protein, CAND1; 90.5 5.9 0.0002 45.3 17.1 158 253-427 18-179 (1230)
66 2bpt_A Importin beta-1 subunit 89.7 3.1 0.00011 44.8 13.4 157 237-410 323-483 (861)
67 1te4_A Conserved protein MTH18 89.7 1.4 4.7E-05 36.9 8.5 86 241-361 45-130 (131)
68 1qgr_A Protein (importin beta 88.7 26 0.0009 37.6 19.8 160 238-410 366-538 (876)
69 1ibr_B P95, importin beta-1 su 88.4 2.5 8.4E-05 41.7 10.6 115 237-365 320-438 (462)
70 1qgr_A Protein (importin beta 88.0 3.8 0.00013 44.2 12.6 150 241-410 93-247 (876)
71 2db0_A 253AA long hypothetical 81.6 8.8 0.0003 36.2 10.0 96 254-369 120-215 (253)
72 1wa5_C Importin alpha RE-expor 81.4 29 0.00098 38.7 16.2 158 254-428 471-646 (960)
73 2vgl_A Adaptor protein complex 78.4 16 0.00053 39.2 12.3 103 292-408 329-432 (621)
74 2qk1_A Protein STU2; STU2P, XM 77.6 3.8 0.00013 38.7 6.5 115 239-365 105-221 (249)
75 4gmo_A Putative uncharacterize 72.5 66 0.0023 34.7 15.4 159 216-410 54-215 (684)
76 4ffb_C Protein STU2; tubulin f 70.6 32 0.0011 32.2 11.1 171 217-407 34-210 (278)
77 3gs3_A Symplekin, LD45768P; he 65.9 50 0.0017 31.7 11.4 110 290-413 14-131 (257)
78 3dad_A FH1/FH2 domain-containi 63.7 12 0.0004 37.8 6.6 133 220-365 142-287 (339)
79 1wa5_C Importin alpha RE-expor 63.6 54 0.0019 36.5 12.8 120 233-364 30-152 (960)
80 2x19_B Importin-13; nuclear tr 59.9 1.2E+02 0.0042 33.2 14.7 95 255-364 503-599 (963)
81 3gae_A Protein DOA1; UFD3, CDC 56.0 18 0.0006 34.7 6.1 179 239-441 57-252 (253)
82 2x1g_F Cadmus; transport prote 54.1 1.2E+02 0.0041 33.5 13.4 116 234-364 35-157 (971)
83 2x1g_F Cadmus; transport prote 51.3 1E+02 0.0036 34.0 12.3 145 256-426 436-587 (971)
84 3ebb_A Phospholipase A2-activa 51.2 27 0.00091 34.4 6.7 118 292-411 147-265 (304)
85 4gmo_A Putative uncharacterize 47.5 23 0.00077 38.4 6.0 68 340-411 39-107 (684)
86 2x19_B Importin-13; nuclear tr 46.6 3.2E+02 0.011 29.8 16.3 199 233-449 52-270 (963)
87 3o2t_A Symplekin; heat repeat, 45.2 1E+02 0.0036 31.3 10.2 104 290-407 24-127 (386)
88 3oc3_A Helicase MOT1, MOT1; re 44.9 1.2E+02 0.004 33.4 10.6 138 256-426 278-418 (800)
89 3tjz_B Coatomer subunit gamma; 44.4 1.4E+02 0.0049 29.8 11.0 89 293-387 140-236 (355)
90 2of3_A ZYG-9; multifunctional 42.9 1.3E+02 0.0044 29.0 10.0 94 255-370 146-243 (266)
91 2iw3_A Elongation factor 3A; a 41.6 63 0.0021 37.0 8.6 183 237-446 132-323 (986)
92 3dad_A FH1/FH2 domain-containi 41.2 85 0.0029 31.5 8.6 115 297-416 123-239 (339)
93 3pst_A Protein DOA1; protein d 39.1 2E+02 0.0069 29.7 11.2 163 258-441 243-424 (425)
94 3ibv_A Exportin-T; karyopherin 31.4 1.3E+02 0.0043 34.2 9.0 108 309-425 460-580 (980)
95 3l3f_X Protein DOA1, DOA1/UFD3 31.0 61 0.0021 32.8 5.7 163 258-441 180-361 (362)
96 3ibv_A Exportin-T; karyopherin 30.4 1.6E+02 0.0054 33.4 9.6 72 293-369 194-265 (980)
97 3m1i_C Exportin-1; heat repeat 29.8 4.3E+02 0.015 29.5 13.1 177 236-429 192-397 (1049)
98 3a6p_A Exportin-5; exportin-5, 25.2 4.6E+02 0.016 30.2 12.4 158 255-428 221-401 (1204)
99 3gjx_A Exportin-1; transport, 23.7 2.4E+02 0.0083 32.4 9.6 73 236-323 204-277 (1073)
100 2ezd_A High mobility group pro 20.7 76 0.0026 20.0 2.5 18 18-35 3-20 (26)
101 1x4q_A U4/U6 small nuclear rib 20.1 2.4E+02 0.0083 22.7 6.3 63 336-411 22-84 (92)
No 1
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.90 E-value=2.4e-08 Score=92.42 Aligned_cols=219 Identities=17% Similarity=0.168 Sum_probs=162.8
Q ss_pred hhhhhhcCCCCCC-cHHHHhhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCc-cccccCCCcccccccchhHHH
Q 012466 216 ASNIIRNFSFMPD-NEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLL-DLRIFSSSKQSYIKITREKRA 293 (463)
Q Consensus 216 as~ILRNLSf~~~-N~~~LA~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l-~L~~~~~s~~~~l~i~~~~~l 293 (463)
++.+|+|++...+ |...+.+ ...+..|+.++... +.+++..++.++.|++..- +.. -.+. ....
T Consensus 22 a~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~~~~~---------~~~~-~~~~ 87 (252)
T 4hxt_A 22 AARDLAEIASGPASAIKAIVD-AGGVEVLVKLLTST---DSEVQKEAARALANIASGPDEAI---------KAIV-DAGG 87 (252)
T ss_dssp HHHHHHHHHTSCHHHHHHHHH-TTHHHHHHHHTTCS---CHHHHHHHHHHHHHHTTSCHHHH---------HHHH-HTTH
T ss_pred HHHHHHHHhcCCcHHHHHHHH-CCCHHHHHHHHhCC---CHHHHHHHHHHHHHHHcCChHHH---------HHHH-HCCC
Confidence 5788999987665 7777776 46777777777764 4689999999999999541 111 0111 2336
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHhhcC-CCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHH
Q 012466 294 VEAIMGILGSPFKAWHCAAAELLGRLII-NPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLK 372 (463)
Q Consensus 294 l~tL~~~L~S~Dr~~~l~aLE~L~rLs~-~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ 372 (463)
+..|..+|.+++......|+.+|++|+. ++.+...+.. ...++.++++|..++.+++..++.+|.+++..+...+..
T Consensus 88 i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 165 (252)
T 4hxt_A 88 VEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVD--AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 165 (252)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH--CCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 7889999999999999999999999995 4444322222 127888999999999999999999999999987766555
Q ss_pred hhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhc-CCCcchhHHhh--HHHHHHHHh-ccchhHHHHHHHHHHHhcC
Q 012466 373 LASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVS-EPQNRVLLLAY--ENAFAEILF-SDGRYSDTFARILYELTSR 448 (463)
Q Consensus 373 ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~-~p~n~~~ll~~--E~~l~~i~~-sD~~~~~~~~~iL~~l~~~ 448 (463)
+. ..+.|..|+.++.++ ++++...|+.+|.+|+. .|+++..+... =+.|..+.- .|+.+...-..+|..+...
T Consensus 166 ~~-~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 242 (252)
T 4hxt_A 166 IV-DAGGVEVLVKLLTST--DSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSG 242 (252)
T ss_dssp HH-HTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHT
T ss_pred HH-HCcCHHHHHHHHCCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcC
Confidence 54 478999999999865 67889999999999998 55555555431 123333322 4788889999999999887
Q ss_pred CCccc
Q 012466 449 PNNKV 453 (463)
Q Consensus 449 ~~~~~ 453 (463)
..++.
T Consensus 243 ~~~~~ 247 (252)
T 4hxt_A 243 GWLEH 247 (252)
T ss_dssp CBCCC
T ss_pred CCccc
Confidence 76653
No 2
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.74 E-value=7.5e-08 Score=98.02 Aligned_cols=222 Identities=15% Similarity=0.126 Sum_probs=159.8
Q ss_pred hhhhhhcCCCCCCcHHHHhhChhHHHHHHHhhhc----c----CCChHHHHHHHHHHHHhhCCCccccccCCCccccccc
Q 012466 216 ASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIED----H----VTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKI 287 (463)
Q Consensus 216 as~ILRNLSf~~~N~~~LA~~~~ll~lLl~~l~~----~----~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i 287 (463)
++..|.|+|+.++|-..|.+.-. +..|+..+.. + .....+++.++.-+|.||+..-+ .+.. .|
T Consensus 52 A~~aL~nls~d~e~R~~i~~~G~-l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~-------~~k~-~i 122 (354)
T 3nmw_A 52 AVCVLMKLSFDEEHRHAMNELGG-LQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDV-------ANKA-TL 122 (354)
T ss_dssp HHHHHHHHHTSHHHHHHHHHTTH-HHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCH-------HHHH-HH
T ss_pred HHHHHHHHcCCHHHHHHHHHcCC-HHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCH-------HHHH-HH
Confidence 68899999999999999998654 4444444421 1 11235799999999999994321 0111 12
Q ss_pred chhHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCC--CCCccccCCCchHHHHHHHHhc-CCcHHHHHHHHHHHHHHhhc
Q 012466 288 TREKRAVEAIMGILGSPFKAWHCAAAELLGRLIIN--PDNEPFLLPFVPQIHKRLVDLM-SLPAFDAQAAAVGALYNLAE 364 (463)
Q Consensus 288 ~~~~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~--~~Ne~~ll~~~p~i~~rlv~lL-~l~D~~Ll~aaLe~LY~Lt~ 364 (463)
....-+...|..+|.+++......|..+|.+|+.. +.|...+... ..+..++++| ...+.+.++.++.+|++|+.
T Consensus 123 ~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~--G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~ 200 (354)
T 3nmw_A 123 CSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREV--GSVKALMECALEVKKESTLKSVLSALWNLSA 200 (354)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHT--THHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred HHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHC--CCHHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 10133578899999999999999999999999986 2343333311 1677888864 45678999999999999999
Q ss_pred cCHHHHHHhhcchhHHHHHHHhhcCCCCC--hHHHHHHHHHHHHhhc----CCCcchhHHhhHH--HHHHHHh-ccchhH
Q 012466 365 VNVDCRLKLASERWAIDRLLRVIKTPHPV--PEVCRKAAMILESLVS----EPQNRVLLLAYEN--AFAEILF-SDGRYS 435 (463)
Q Consensus 365 l~~~~~~~ia~~~~~V~~LV~Ll~~~~~~--~em~rrAA~~L~~l~~----~p~n~~~ll~~E~--~l~~i~~-sD~~~~ 435 (463)
.+.+.+..|+...+.|..||.+|..+++. .++.+.|+.+|.+|+. .++||..+.-..- .|.++.- .+.++-
T Consensus 201 ~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~ 280 (354)
T 3nmw_A 201 HCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIV 280 (354)
T ss_dssp TCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHH
T ss_pred cChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHH
Confidence 87777778887899999999999887543 2688999999999996 8999988764322 1222222 356677
Q ss_pred HHHHHHHHHHhcC
Q 012466 436 DTFARILYELTSR 448 (463)
Q Consensus 436 ~~~~~iL~~l~~~ 448 (463)
..-+..|..|+.+
T Consensus 281 ~~A~~aL~nLa~~ 293 (354)
T 3nmw_A 281 SNACGTLWNLSAR 293 (354)
T ss_dssp HHHHHHHHHHTSS
T ss_pred HHHHHHHHHHhCC
Confidence 7778888888754
No 3
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.73 E-value=1.8e-07 Score=87.51 Aligned_cols=177 Identities=19% Similarity=0.180 Sum_probs=134.7
Q ss_pred hhhhhhcCCC-CCCcHHHHhhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHH
Q 012466 216 ASNIIRNFSF-MPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAV 294 (463)
Q Consensus 216 as~ILRNLSf-~~~N~~~LA~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll 294 (463)
++.+|.|++. .++|...+.+. ..+..|+.++... +.+++..++.+|.||+..-... ...+. ....+
T Consensus 74 a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~lL~~~---~~~v~~~a~~~L~~l~~~~~~~--------~~~~~-~~~~i 140 (252)
T 4db8_A 74 ALWALSNIASGGNEQIQAVIDA-GALPALVQLLSSP---NEQILQEALWALSNIASGGNEQ--------IQAVI-DAGAL 140 (252)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHT-THHHHHHHGGGCS---CHHHHHHHHHHHHHHTTSCHHH--------HHHHH-HTTHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHc-CCHHHHHHHHcCC---CHHHHHHHHHHHHHhhcCCchH--------HHHHH-HCCCH
Confidence 5788999998 67888777764 6777888877763 4689999999999998542211 00111 23377
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHhhcCCCC-CccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHh
Q 012466 295 EAIMGILGSPFKAWHCAAAELLGRLIINPD-NEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKL 373 (463)
Q Consensus 295 ~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~-Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~i 373 (463)
..|..+|.+++......|+.+|++|+.... +...+.. ...+..++++|..+|.+++..++.+|.+++..+...+..+
T Consensus 141 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 218 (252)
T 4db8_A 141 PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID--AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAV 218 (252)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHH--CCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 889999999999999999999999997542 2111111 1267788999999999999999999999998777665554
Q ss_pred hcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcC
Q 012466 374 ASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSE 410 (463)
Q Consensus 374 a~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~~ 410 (463)
. ..+.|..|+.++.++ ++++.+.|+.+|.+|+++
T Consensus 219 ~-~~g~i~~L~~ll~~~--~~~v~~~A~~~L~~l~~~ 252 (252)
T 4db8_A 219 K-EAGALEKLEQLQSHE--NEKIQKEAQEALEKLQSH 252 (252)
T ss_dssp H-HTTHHHHHHTTTTCS--SSHHHHTHHHHHHTTC--
T ss_pred H-HCCcHHHHHHHhCCC--CHHHHHHHHHHHHHHhcC
Confidence 4 568999999999876 678899999999999864
No 4
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.70 E-value=1.2e-07 Score=86.48 Aligned_cols=177 Identities=19% Similarity=0.176 Sum_probs=132.9
Q ss_pred hhhhhhcCCC-CCCcHHHHhhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHH
Q 012466 216 ASNIIRNFSF-MPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAV 294 (463)
Q Consensus 216 as~ILRNLSf-~~~N~~~LA~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll 294 (463)
++..|+|++. .+++...+.+ ...+..|+.++... +.+++..++-++.||+..-+-. .. .+. ....+
T Consensus 32 a~~~L~~l~~~~~~~~~~i~~-~g~i~~L~~lL~~~---~~~v~~~a~~~L~~l~~~~~~~-------~~-~i~-~~g~i 98 (210)
T 4db6_A 32 ALRKLSQIASGGNEQIQAVID-AGALPALVQLLSSP---NEQILQEALWALSNIASGGNEQ-------IQ-AVI-DAGAL 98 (210)
T ss_dssp HHHHHHHHHTSCHHHHHHHHH-TTHHHHHHHHTTCS---CHHHHHHHHHHHHHHTTSCHHH-------HH-HHH-HTTCH
T ss_pred HHHHHHHHHcCCHHHHHHHHH-cCCHHHHHHHHcCC---CHHHHHHHHHHHHHHhcCCcHH-------HH-HHH-HCCCH
Confidence 6788999995 4566666665 47788888888764 4679999999999999432110 00 011 12256
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHhhcCCCCC-ccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHh
Q 012466 295 EAIMGILGSPFKAWHCAAAELLGRLIINPDN-EPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKL 373 (463)
Q Consensus 295 ~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~N-e~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~i 373 (463)
..|..+|.+++......|+.+|++|+....+ ...+.. ...+..++++|..+|.+++..++.+|.+++..+...+..
T Consensus 99 ~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~- 175 (210)
T 4db6_A 99 PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID--AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQA- 175 (210)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHH-
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHH--cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHH-
Confidence 7888999999999999999999999974332 111111 127889999999999999999999999999987766544
Q ss_pred hcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcC
Q 012466 374 ASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSE 410 (463)
Q Consensus 374 a~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~~ 410 (463)
....+.|..|+.++.++ ++++.+.|+..|.+|+++
T Consensus 176 ~~~~g~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 176 VKEAGALEKLEQLQSHE--NEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp HHHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHCC-
T ss_pred HHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHhcC
Confidence 45568999999999865 888999999999999864
No 5
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=98.68 E-value=1.2e-07 Score=87.59 Aligned_cols=182 Identities=19% Similarity=0.186 Sum_probs=139.6
Q ss_pred hhhhhhcCCCC-CCcHHHHhhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHH
Q 012466 216 ASNIIRNFSFM-PDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAV 294 (463)
Q Consensus 216 as~ILRNLSf~-~~N~~~LA~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll 294 (463)
++.+|.|++.. ++|...+.+ ...+..|+.++.. .+.+++..++.+|.|++..-+-. . -.+. ....+
T Consensus 64 a~~~L~~l~~~~~~~~~~~~~-~~~i~~l~~ll~~---~~~~v~~~a~~~L~~l~~~~~~~-------~-~~~~-~~~~i 130 (252)
T 4hxt_A 64 AARALANIASGPDEAIKAIVD-AGGVEVLVKLLTS---TDSEVQKEAARALANIASGPDEA-------I-KAIV-DAGGV 130 (252)
T ss_dssp HHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTC---SSHHHHHHHHHHHHHHTTSCHHH-------H-HHHH-HTTHH
T ss_pred HHHHHHHHHcCChHHHHHHHH-CCCHHHHHHHHcC---CCHHHHHHHHHHHHHHHcCCHHH-------H-HHHH-HCCCH
Confidence 57889999998 888887775 4567777777764 45789999999999999532100 0 0111 23368
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHhhcCCCCC-ccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHh
Q 012466 295 EAIMGILGSPFKAWHCAAAELLGRLIINPDN-EPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKL 373 (463)
Q Consensus 295 ~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~N-e~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~i 373 (463)
..|..++.+++......|+.+|++|+....+ ...+.. ...++.++++|..+|.+++..++.+|++++..+...+..+
T Consensus 131 ~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l 208 (252)
T 4hxt_A 131 EVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVD--AGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAI 208 (252)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH--CcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8899999999999999999999999985432 122211 1278889999999999999999999999998766654444
Q ss_pred hcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCcch
Q 012466 374 ASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRV 415 (463)
Q Consensus 374 a~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~~p~n~~ 415 (463)
...+.|..|+.++.++ ++++.+.|+.+|.+|+..+.+..
T Consensus 209 -~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~ 247 (252)
T 4hxt_A 209 -VDAGGVEVLQKLLTST--DSEVQKEAQRALENIKSGGWLEH 247 (252)
T ss_dssp -HHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHHHTCBCCC
T ss_pred -HHCCCHHHHHHHHCCC--cHHHHHHHHHHHHHHHcCCCccc
Confidence 4578999999999865 77899999999999999887654
No 6
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.66 E-value=2.1e-07 Score=98.00 Aligned_cols=224 Identities=15% Similarity=0.126 Sum_probs=161.1
Q ss_pred hhhhhhhhcCCCCCCcHHHHhhChhHHHHHHHhhhc----c----CCChHHHHHHHHHHHHhhCCCccccccCCCccccc
Q 012466 214 VGASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIED----H----VTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYI 285 (463)
Q Consensus 214 ~eas~ILRNLSf~~~N~~~LA~~~~ll~lLl~~l~~----~----~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l 285 (463)
|.++..|-|+++.++|-..|.+.- .+..|+.++.. + .....+++.++.-+|.||+..-+- +..
T Consensus 166 ~qAv~aL~nls~~~e~R~~i~~~G-~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~-------~k~- 236 (458)
T 3nmz_A 166 CPAVCVLMKLSFDEEHRHAMNELG-GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVA-------NKA- 236 (458)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHTT-HHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHH-------HHH-
T ss_pred HHHHHHHHHhcCCHHHHHHHHHCC-CHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcc-------cHH-
Confidence 347888999999999999999864 44444444421 1 112357999999999999943110 010
Q ss_pred ccchhHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCCC--CCccccCCCchHHHHHHHHhc-CCcHHHHHHHHHHHHHHh
Q 012466 286 KITREKRAVEAIMGILGSPFKAWHCAAAELLGRLIINP--DNEPFLLPFVPQIHKRLVDLM-SLPAFDAQAAAVGALYNL 362 (463)
Q Consensus 286 ~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~--~Ne~~ll~~~p~i~~rlv~lL-~l~D~~Ll~aaLe~LY~L 362 (463)
.+....-+...|..+|.+++......|..+|++|+..+ +|...+... ..+..+|++| ...+.++++.++.+|++|
T Consensus 237 ~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~--GaI~~LV~lLl~s~~~~v~~~A~~aL~nL 314 (458)
T 3nmz_A 237 TLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREV--GSVKALMECALEVKKESTLKSVLSALWNL 314 (458)
T ss_dssp HHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHT--THHHHHHHHHTTCCSHHHHHHHHHHHHHH
T ss_pred HHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHc--CCHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 12101335788999999999999999999999999853 343333311 1677888875 446889999999999999
Q ss_pred hccCHHHHHHhhcchhHHHHHHHhhcCCCCCh--HHHHHHHHHHHHhhc----CCCcchhHHhhHH--HHHHHHh-ccch
Q 012466 363 AEVNVDCRLKLASERWAIDRLLRVIKTPHPVP--EVCRKAAMILESLVS----EPQNRVLLLAYEN--AFAEILF-SDGR 433 (463)
Q Consensus 363 t~l~~~~~~~ia~~~~~V~~LV~Ll~~~~~~~--em~rrAA~~L~~l~~----~p~n~~~ll~~E~--~l~~i~~-sD~~ 433 (463)
+..+.+.+..|+...+.|..||.+|.++.+.. ++.+.|+.+|.+|+. .|+|+..+.-..- .|..+.- .+..
T Consensus 315 s~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~ 394 (458)
T 3nmz_A 315 SAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLT 394 (458)
T ss_dssp HHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHH
T ss_pred ccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChH
Confidence 99777777788878999999999998875432 688999999999995 8999988764322 2222222 3666
Q ss_pred hHHHHHHHHHHHhcC
Q 012466 434 YSDTFARILYELTSR 448 (463)
Q Consensus 434 ~~~~~~~iL~~l~~~ 448 (463)
+-..-+.+|..|+.+
T Consensus 395 v~~~A~~aL~nLa~~ 409 (458)
T 3nmz_A 395 IVSNACGTLWNLSAR 409 (458)
T ss_dssp HHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHcC
Confidence 777778888888853
No 7
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=98.64 E-value=4.7e-07 Score=84.56 Aligned_cols=213 Identities=16% Similarity=0.175 Sum_probs=148.6
Q ss_pred hhhhhc-CCCCCCcHHHHhhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHH
Q 012466 217 SNIIRN-FSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVE 295 (463)
Q Consensus 217 s~ILRN-LSf~~~N~~~LA~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~ 295 (463)
+..||| ++-.++|...+.+ ...+..|+.++... +.+++..++.+|.|++..-+-. . -.+. ..-.+.
T Consensus 33 ~~~L~~~l~~~~~~~~~~~~-~g~i~~L~~lL~~~---~~~v~~~a~~~L~~l~~~~~~~-------~-~~i~-~~g~i~ 99 (252)
T 4db8_A 33 TRKFSQILSDGNEQIQAVID-AGALPALVQLLSSP---NEQILQEALWALSNIASGGNEQ-------I-QAVI-DAGALP 99 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TTHHHHHHHGGGCS---CHHHHHHHHHHHHHHTTSCHHH-------H-HHHH-HTTHHH
T ss_pred HHHHHHHHcCCCchHHHHHH-cCcHHHHHHHHcCC---CHHHHHHHHHHHHHHhcCCHHH-------H-HHHH-HcCCHH
Confidence 444544 2225667777776 46777788877764 3679999999999999532100 0 0111 123678
Q ss_pred HHHHhhCCCChHHHHHHHHHHHhhcCCCCCc-cccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhh
Q 012466 296 AIMGILGSPFKAWHCAAAELLGRLIINPDNE-PFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLA 374 (463)
Q Consensus 296 tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne-~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia 374 (463)
.|..+|.+++......|+.+|++|+..+.+. ..+.. ...++.++++|..+|.+++..++.+|++++..+...+..+
T Consensus 100 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~- 176 (252)
T 4db8_A 100 ALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID--AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV- 176 (252)
T ss_dssp HHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH-
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHH--CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH-
Confidence 8999999999999999999999999887654 22221 1278889999999999999999999999998876654443
Q ss_pred cchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhc-CCCcchhHHhhH--HHHHHHHh-ccchhHHHHHHHHHHHhc
Q 012466 375 SERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVS-EPQNRVLLLAYE--NAFAEILF-SDGRYSDTFARILYELTS 447 (463)
Q Consensus 375 ~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~-~p~n~~~ll~~E--~~l~~i~~-sD~~~~~~~~~iL~~l~~ 447 (463)
...+.|..|+.++.++ ++++.+.|+.+|.+|+. .|+++..++... ..|..+.- .|+++...-+.+|..|.+
T Consensus 177 ~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 177 IDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHTTCHHHHHHGGGCS--SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHCCCHHHHHHHHCCC--CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 4478999999999876 78889999999999995 455555554221 11111111 266666666666666543
No 8
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=98.59 E-value=4.2e-07 Score=92.47 Aligned_cols=225 Identities=18% Similarity=0.176 Sum_probs=165.3
Q ss_pred hhhhhhhcCCCCCC-cHHHHhhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHH
Q 012466 215 GASNIIRNFSFMPD-NEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRA 293 (463)
Q Consensus 215 eas~ILRNLSf~~~-N~~~LA~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~l 293 (463)
+++.+|+|+++..+ |-..+.....++..|+.++.. .+.++++++.-.|.||+..-+ ...+. .|. +.-.
T Consensus 103 ~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s---~~~~v~~~A~~aL~nLs~~~~------~~~k~-~i~-~~G~ 171 (354)
T 3nmw_A 103 YAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKS---ESEDLQQVIASVLRNLSWRAD------VNSKK-TLR-EVGS 171 (354)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGC---SCHHHHHHHHHHHHHHHTTCC------HHHHH-HHH-HTTH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCC---CCHHHHHHHHHHHHHHhccCC------HHHHH-HHH-HCCC
Confidence 37899999999876 666777788888999888875 346799999999999985311 00000 111 1225
Q ss_pred HHHHHHh-hCCCChHHHHHHHHHHHhhcC-CCCCccccCCCchHHHHHHHHhcCCcHH----HHHHHHHHHHHHhhc---
Q 012466 294 VEAIMGI-LGSPFKAWHCAAAELLGRLII-NPDNEPFLLPFVPQIHKRLVDLMSLPAF----DAQAAAVGALYNLAE--- 364 (463)
Q Consensus 294 l~tL~~~-L~S~Dr~~~l~aLE~L~rLs~-~~~Ne~~ll~~~p~i~~rlv~lL~l~D~----~Ll~aaLe~LY~Lt~--- 364 (463)
...|..+ +.+.+......|+.+|..|+. +++|...+.. ....+..++++|..++. ++++.+.-+|.+|+.
T Consensus 172 Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~-~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a 250 (354)
T 3nmw_A 172 VKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICA-VDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIA 250 (354)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHH-STTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHH-hcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhcc
Confidence 6777776 456777788889999999998 6666533321 12267788888876543 588999999999998
Q ss_pred cCHHHHHHhhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhh-cCCCcchhHHhh--HHHHHHHHh-ccchhHHHHHH
Q 012466 365 VNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLV-SEPQNRVLLLAY--ENAFAEILF-SDGRYSDTFAR 440 (463)
Q Consensus 365 l~~~~~~~ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~-~~p~n~~~ll~~--E~~l~~i~~-sD~~~~~~~~~ 440 (463)
.+++.+.. ....+.|..||.+|.++ +.++.+.|+.+|.+|+ ..|+|+..++.. -..|.++.- .|.++...-+.
T Consensus 251 ~~~~~~~~-i~~~g~i~~Lv~lL~~~--~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~ 327 (354)
T 3nmw_A 251 TNEDHRQI-LRENNCLQTLLQHLKSH--SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAA 327 (354)
T ss_dssp TCHHHHHH-HHTTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHH
T ss_pred CCHHHHHH-HHHcCCHHHHHHHHcCC--ChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHH
Confidence 46666544 44578899999999865 7888999999999999 579999888654 233333322 37888888899
Q ss_pred HHHHHhcCCCcccc
Q 012466 441 ILYELTSRPNNKVA 454 (463)
Q Consensus 441 iL~~l~~~~~~~~~ 454 (463)
.|..|+.+...|..
T Consensus 328 aL~nL~~~~~~~~~ 341 (354)
T 3nmw_A 328 ALRNLMANRPAKYK 341 (354)
T ss_dssp HHHHHHTTCCGGGC
T ss_pred HHHHHHcCCHHHHh
Confidence 99999999888854
No 9
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=98.57 E-value=7.2e-07 Score=81.18 Aligned_cols=192 Identities=17% Similarity=0.185 Sum_probs=138.0
Q ss_pred HHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q 012466 239 CLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELLGR 318 (463)
Q Consensus 239 ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~L~r 318 (463)
....|..+++. ++.+++..++..|.+++..-+-. . -.+. +...+..|..+|.+++......|+.+|++
T Consensus 13 ~~~~l~~LL~s---~~~~v~~~a~~~L~~l~~~~~~~-------~-~~i~-~~g~i~~L~~lL~~~~~~v~~~a~~~L~~ 80 (210)
T 4db6_A 13 ELPQMVQQLNS---PDQQELQSALRKLSQIASGGNEQ-------I-QAVI-DAGALPALVQLLSSPNEQILQEALWALSN 80 (210)
T ss_dssp CHHHHHHHTTC---SCHHHHHHHHHHHHHHHTSCHHH-------H-HHHH-HTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHhcC---CCHHHHHHHHHHHHHHHcCCHHH-------H-HHHH-HcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 33445555554 45689999999999999431100 0 0111 22367889999999999999999999999
Q ss_pred hcCC-CCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhcCCCCChHHH
Q 012466 319 LIIN-PDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVC 397 (463)
Q Consensus 319 Ls~~-~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~~~~~~~em~ 397 (463)
|+.. +.+...+.. ...+..++.+|..+|..++..++.+|.+++..+...+..+. ..+.|..|+.++.++ ++++.
T Consensus 81 l~~~~~~~~~~i~~--~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~L~~ll~~~--~~~v~ 155 (210)
T 4db6_A 81 IASGGNEQIQAVID--AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI-DAGALPALVQLLSSP--NEQIL 155 (210)
T ss_dssp HTTSCHHHHHHHHH--TTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHHHTTCS--CHHHH
T ss_pred HhcCCcHHHHHHHH--CCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHH-HcCcHHHHHHHHcCC--CHHHH
Confidence 9954 333322221 12577889999999999999999999999998776655554 568999999999876 78899
Q ss_pred HHHHHHHHHhhcC-CCcchhHHhhH--HHHHHHHh-ccchhHHHHHHHHHHHhc
Q 012466 398 RKAAMILESLVSE-PQNRVLLLAYE--NAFAEILF-SDGRYSDTFARILYELTS 447 (463)
Q Consensus 398 rrAA~~L~~l~~~-p~n~~~ll~~E--~~l~~i~~-sD~~~~~~~~~iL~~l~~ 447 (463)
+.|+.+|.+|+.. |+++..+.... +.|..+.- .|+.+...-+.+|-.|.+
T Consensus 156 ~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 156 QEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 9999999999998 77776664332 23333222 377788777777777654
No 10
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=98.50 E-value=7.2e-07 Score=93.94 Aligned_cols=224 Identities=18% Similarity=0.179 Sum_probs=164.0
Q ss_pred hhhhhhhcCCCCCC-cHHHHhhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHH
Q 012466 215 GASNIIRNFSFMPD-NEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRA 293 (463)
Q Consensus 215 eas~ILRNLSf~~~-N~~~LA~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~l 293 (463)
+++.+|+||++..+ |...+.....++..|+.++.. .+.++++++.-.|.||+..-+-. .+. .|. +.-.
T Consensus 219 ~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s---~~~~v~~~A~~aL~nLs~~~~~~------~k~-~I~-~~Ga 287 (458)
T 3nmz_A 219 YAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKS---ESEDLQQVIASVLRNLSWRADVN------SKK-TLR-EVGS 287 (458)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGC---SCHHHHHHHHHHHHHHTSSCCHH------HHH-HHH-HTTH
T ss_pred HHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCHH------HHH-HHH-HcCC
Confidence 47899999999876 555666778888999888875 35689999999999998531100 000 111 1225
Q ss_pred HHHHHHh-hCCCChHHHHHHHHHHHhhcC-CCCCccccCCCchHHHHHHHHhcCCcHH----HHHHHHHHHHHHhhc---
Q 012466 294 VEAIMGI-LGSPFKAWHCAAAELLGRLII-NPDNEPFLLPFVPQIHKRLVDLMSLPAF----DAQAAAVGALYNLAE--- 364 (463)
Q Consensus 294 l~tL~~~-L~S~Dr~~~l~aLE~L~rLs~-~~~Ne~~ll~~~p~i~~rlv~lL~l~D~----~Ll~aaLe~LY~Lt~--- 364 (463)
...|..+ +.+.+......|+.+|.+|+. +++|...+.. ....+.-++++|..++. ++++.+.-+|.+|+.
T Consensus 288 I~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~-~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a 366 (458)
T 3nmz_A 288 VKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICA-VDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIA 366 (458)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHH-STTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHH-hcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhccc
Confidence 6778786 456677788899999999998 7777544321 12267778888876543 588999999999997
Q ss_pred cCHHHHHHhhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhh-cCCCcchhHHhhH--HHHHHHH-hccchhHHHHHH
Q 012466 365 VNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLV-SEPQNRVLLLAYE--NAFAEIL-FSDGRYSDTFAR 440 (463)
Q Consensus 365 l~~~~~~~ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~-~~p~n~~~ll~~E--~~l~~i~-~sD~~~~~~~~~ 440 (463)
.+++.+.. ....+.|..||.+|..+ +.++.+.|+.+|.+|+ ..|+|+..++..- ..|.++. -.|.++...-+.
T Consensus 367 ~~~~~~~~-i~~~G~i~~Lv~LL~~~--~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~ 443 (458)
T 3nmz_A 367 TNEDHRQI-LRENNCLQTLLQHLKSH--SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAA 443 (458)
T ss_dssp TCHHHHHH-HHHTTHHHHHHHHSSCS--CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHH
T ss_pred CCHHHHHH-HHHcccHHHHHHHHcCC--ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHH
Confidence 46665444 44567899999999876 7788999999999999 5799999886542 3333332 238888899999
Q ss_pred HHHHHhcCCCccc
Q 012466 441 ILYELTSRPNNKV 453 (463)
Q Consensus 441 iL~~l~~~~~~~~ 453 (463)
.|..|..+...|.
T Consensus 444 AL~nL~~~~p~ky 456 (458)
T 3nmz_A 444 ALRNLMANRPAKY 456 (458)
T ss_dssp HHHHHHTCCSCC-
T ss_pred HHHHHHcCCHhhh
Confidence 9999998877774
No 11
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=98.44 E-value=3.3e-06 Score=90.90 Aligned_cols=218 Identities=16% Similarity=0.173 Sum_probs=164.6
Q ss_pred hhhhhhcCCCCCCcHHHHhhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHH
Q 012466 216 ASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVE 295 (463)
Q Consensus 216 as~ILRNLSf~~~N~~~LA~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~ 295 (463)
++.+|.|++...+|...+..++..+..|+..+... ++.+++..+..+|.+++..-+.. . .+. ....+.
T Consensus 34 A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~--~~~~~~~~A~~~L~~Ls~~~~~~--------~-~i~-~~g~i~ 101 (644)
T 2z6h_A 34 AAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT--NDVETARCTAGTLHNLSHHREGL--------L-AIF-KSGGIP 101 (644)
T ss_dssp HHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSC--CCHHHHHHHHHHHHHHTTSHHHH--------H-HHH-TTTHHH
T ss_pred HHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcC--CCHHHHHHHHHHHHHHhcChhhH--------H-HHH-HcCCHH
Confidence 57889999999999888888888899988888754 35679999999999998653211 1 111 223678
Q ss_pred HHHHhhCCCChHHHHHHHHHHHhhcCCCCCc-cccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhh
Q 012466 296 AIMGILGSPFKAWHCAAAELLGRLIINPDNE-PFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLA 374 (463)
Q Consensus 296 tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne-~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia 374 (463)
.|..+|.+++...+..|+++|.+|+....+. ..+.. ...+..++++|..++..++..++++|.+++..+.+.+..+.
T Consensus 102 ~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~--~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~ 179 (644)
T 2z6h_A 102 ALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL--AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIIL 179 (644)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHH--TTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHH--CCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 8999999999999999999999999875431 11110 12678899999988889999999999999987777777665
Q ss_pred cchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCcchhHHhhH--HHHHHHH-hccchhHHHHHHHHHHHhcCC
Q 012466 375 SERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLLAYE--NAFAEIL-FSDGRYSDTFARILYELTSRP 449 (463)
Q Consensus 375 ~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~~p~n~~~ll~~E--~~l~~i~-~sD~~~~~~~~~iL~~l~~~~ 449 (463)
.. +.|..|+.++..+. ..+....|+..|.+|+..|+||..++... ..|..+. -.++++....+.+|..|++..
T Consensus 180 ~~-g~v~~Lv~lL~~~~-~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~ 255 (644)
T 2z6h_A 180 AS-GGPQALVNIMRTYT-YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 255 (644)
T ss_dssp HT-THHHHHHHHHTTCC-CHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGC
T ss_pred Hc-CChHHHHHHHHcCC-hHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcc
Confidence 54 78999999998763 34567789999999999999999887542 1122111 136677777777888777654
No 12
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=98.42 E-value=3.6e-06 Score=86.65 Aligned_cols=217 Identities=15% Similarity=0.187 Sum_probs=161.0
Q ss_pred hhhhhhcCCCCCCcHHHHhhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHH
Q 012466 216 ASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVE 295 (463)
Q Consensus 216 as~ILRNLSf~~~N~~~LA~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~ 295 (463)
++.+|.|++..++|...+...+..+..|+..+... .+.+++..+...|.+++..-+.. . .+. ......
T Consensus 37 A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~--~~~~~~~~a~~~L~~ls~~~~~~--------~-~i~-~~g~i~ 104 (529)
T 1jdh_A 37 AAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT--NDVETARCTAGTLHNLSHHREGL--------L-AIF-KSGGIP 104 (529)
T ss_dssp HHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTTSHHHH--------H-HHH-HTTHHH
T ss_pred HHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcC--CCHHHHHHHHHHHHHHHcCchhH--------H-HHH-HcCCHH
Confidence 67889999999998888888888888888887654 35679999999999988642211 1 121 223678
Q ss_pred HHHHhhCCCChHHHHHHHHHHHhhcCCCCCc-cccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhh
Q 012466 296 AIMGILGSPFKAWHCAAAELLGRLIINPDNE-PFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLA 374 (463)
Q Consensus 296 tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne-~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia 374 (463)
.|..+|.++|...+..|+++|.+|+...++. ..+.. ...+..++.+|..++.+.+..+..+|.+++..+++.+..+.
T Consensus 105 ~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~ 182 (529)
T 1jdh_A 105 ALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL--AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIIL 182 (529)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHH--HTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHH--cCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 8899999999889999999999999886542 11110 12678899999989999999999999999998888777766
Q ss_pred cchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCcchhHHhhHHHHHHH-Hh---ccchhHHHHHHHHHHHhcCC
Q 012466 375 SERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLLAYENAFAEI-LF---SDGRYSDTFARILYELTSRP 449 (463)
Q Consensus 375 ~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~~p~n~~~ll~~E~~l~~i-~~---sD~~~~~~~~~iL~~l~~~~ 449 (463)
.. +.|..|+.++..+. ..+....|+..|.+|+..|+|+..++... .+..+ .+ .|+.+....+.+|..|++..
T Consensus 183 ~~-~~i~~L~~ll~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~g-~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~ 258 (529)
T 1jdh_A 183 AS-GGPQALVNIMRTYT-YEKLLWTTSRVLKVLSVCSSNKPAIVEAG-GMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 258 (529)
T ss_dssp HT-THHHHHHHHHHHCC-CHHHHHHHHHHHHHHTTSTTHHHHHHHTT-HHHHHHTTTTSSCHHHHHHHHHHHHHHHTTC
T ss_pred HC-CCHHHHHHHHHhCC-hHHHHHHHHHHHHHHhcCcccHHHHHHCC-CHHHHHHHHhCCChHHHHHHHHHHHHHhcCC
Confidence 54 78999999998763 33455567888999999999998886533 11111 11 25566666677777776654
No 13
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=98.38 E-value=1.1e-05 Score=86.87 Aligned_cols=277 Identities=13% Similarity=0.140 Sum_probs=190.3
Q ss_pred cHHHHHHHHhcCCchhHHHHHHHHHhhhcccccccccCCCCCcCccchHHHHHHhhhhhhhhccccccccCccccccccc
Q 012466 64 NHKRIVLALQSGLKSELTWALNTLTLLSFKEKDDMRKDATPLAKIPGLLDALLQVIDDWRDIALPKELSKGPRARTLGVN 143 (463)
Q Consensus 64 ~y~RL~LSL~SGLpnEvdfALN~LtllS~e~~~~lr~d~~~L~~~PgLldALl~v~~~~~~i~~~~~~~~~~~~r~l~~~ 143 (463)
-...|+.-|.++-|.-+..|+..|..++.+..... .+...++.+.+++..+.+
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~-----~i~~~~~~i~~Lv~~L~~---------------------- 67 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRH-----AIMRSPQMVSAIVRTMQN---------------------- 67 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHH-----HHTTCHHHHHHHHHHHHS----------------------
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHH-----HHHhccChHHHHHHHHhc----------------------
Confidence 36778888889999999999999999998765311 133456777777754421
Q ss_pred ccccccCcccccccCCCCCCCCCCCCCCCchhhhHHHhhhhhccCCccccccCCCCCCChHHHHHHHHhhhhhhhhhhcC
Q 012466 144 SLVTGFGSEFEALGSINNAFPRSGVGSGSSAADSLVQKNAARVRSSEWWFDEDGLFNLDDEGRAEKQQCAVGASNIIRNF 223 (463)
Q Consensus 144 ~~~~~~g~~~~~~~~~d~~~~w~~~~~~~~~~~~i~~~~~~~~~~~~~~~de~~lf~~d~~~~~~~qr~a~eas~ILRNL 223 (463)
. .+. . .|+ +++.+|+||
T Consensus 68 ---------------~-----------------------------------------~~~---~-~~~---~A~~~L~~L 84 (644)
T 2z6h_A 68 ---------------T-----------------------------------------NDV---E-TAR---CTAGTLHNL 84 (644)
T ss_dssp ---------------C-----------------------------------------CCH---H-HHH---HHHHHHHHH
T ss_pred ---------------C-----------------------------------------CCH---H-HHH---HHHHHHHHH
Confidence 0 000 1 222 257789999
Q ss_pred CCCCCcHHHHhhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCC
Q 012466 224 SFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGS 303 (463)
Q Consensus 224 Sf~~~N~~~LA~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S 303 (463)
+..++|...+.+. ..+..|+.++... +.+++.+++.+|.||+..-+ . ... .+- ....+..|..+|.+
T Consensus 85 s~~~~~~~~i~~~-g~i~~Lv~lL~~~---~~~v~~~A~~aL~nL~~~~~------~-~~~-~v~-~~g~i~~Lv~lL~~ 151 (644)
T 2z6h_A 85 SHHREGLLAIFKS-GGIPALVKMLGSP---VDSVLFYAITTLHNLLLHQE------G-AKM-AVR-LAGGLQKMVALLNK 151 (644)
T ss_dssp TTSHHHHHHHHTT-THHHHHHHHTTCS---SHHHHHHHHHHHHHHHHHST------T-HHH-HHH-HTTHHHHHHHGGGC
T ss_pred hcChhhHHHHHHc-CCHHHHHHHHhCC---CHHHHHHHHHHHHHHHhCcc------h-hHH-HHH-HCCChHHHHHHHCc
Confidence 9999999999986 7788888887764 46799999999999995421 0 000 111 23367888999988
Q ss_pred CChHHHHHHHHHHHhhcC-CCCCccccCCCchHHHHHHHHhcCCcH-HHHHHHHHHHHHHhhccCHHHHHHhhcchhHHH
Q 012466 304 PFKAWHCAAAELLGRLII-NPDNEPFLLPFVPQIHKRLVDLMSLPA-FDAQAAAVGALYNLAEVNVDCRLKLASERWAID 381 (463)
Q Consensus 304 ~Dr~~~l~aLE~L~rLs~-~~~Ne~~ll~~~p~i~~rlv~lL~l~D-~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~ 381 (463)
++......++++|++|+. ++.|...+... ..+..++++|.-.+ ..++..++.+|.+|+.- ...+..+. ..+.|.
T Consensus 152 ~~~~~~~~a~~~L~~La~~~~~~~~~i~~~--g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~~~~l~-~~g~l~ 227 (644)
T 2z6h_A 152 TNVKFLAITTDCLQILAYGNQESKLIILAS--GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIV-EAGGMQ 227 (644)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHT--THHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TTHHHHHH-HTTHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCcHHHHHHHHc--CChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cccHHHHH-HCCCHH
Confidence 877677788899999996 34443222211 15667777777543 57889999999999964 33444444 357999
Q ss_pred HHHHhhcCCCCChHHHHHHHHHHHHhhcCCCcchhHHhhHHHHHHHH-hccchhHHHHHHHHHHHhcCC
Q 012466 382 RLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLLAYENAFAEIL-FSDGRYSDTFARILYELTSRP 449 (463)
Q Consensus 382 ~LV~Ll~~~~~~~em~rrAA~~L~~l~~~p~n~~~ll~~E~~l~~i~-~sD~~~~~~~~~iL~~l~~~~ 449 (463)
.|+.++..+ ++++.+.|+.+|.+|++++.+....-..-..|..+. -.|+.+....+.+|..|+.++
T Consensus 228 ~L~~ll~~~--~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~ 294 (644)
T 2z6h_A 228 ALGLHLTDP--SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN 294 (644)
T ss_dssp HHHTTTTCS--CHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhcC--CHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence 999999876 688899999999999988754322222222333322 247778888888888887754
No 14
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=98.27 E-value=1e-05 Score=87.74 Aligned_cols=173 Identities=16% Similarity=0.191 Sum_probs=132.4
Q ss_pred ChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCC-CccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHH
Q 012466 236 HRHCLETVFQCIEDHVTEDEELVTNALETIVNLAP-LLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAE 314 (463)
Q Consensus 236 ~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~-~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE 314 (463)
++..+..++.++... ...++++++.-+|.|++. ...... ..+. .+- ....+..|..+|.+++...+..|..
T Consensus 306 ~~~~v~~Ll~LL~~s--~~~~v~E~Aa~AL~nL~ag~~~~~~----~~~~-~v~-~~~glp~Lv~LL~s~~~~v~~~A~~ 377 (584)
T 3l6x_A 306 QPEVVRIYISLLKES--KTPAILEASAGAIQNLCAGRWTYGR----YIRS-ALR-QEKALSAIADLLTNEHERVVKAASG 377 (584)
T ss_dssp SHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHSSCSHHHH----HHHH-HHT-SHHHHHHHHHGGGCSCHHHHHHHHH
T ss_pred cccHHHHHHHHHccC--CCHHHHHHHHHHHHHHHcCCccccH----HHHH-HHH-HcCcHHHHHHHHcCCCHHHHHHHHH
Confidence 355566667777544 235799999999999963 211110 0000 011 2346888999999999999999999
Q ss_pred HHHhhcCCCCCccccCCCchHHHHHHHHhcCCc--------HHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHh
Q 012466 315 LLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLP--------AFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRV 386 (463)
Q Consensus 315 ~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~--------D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~L 386 (463)
+|++|+....|...|. ...+.++|++|... ..+.+..++-.|.+++..+...+..|. ..+.|..||.+
T Consensus 378 aL~nLs~~~~~~~~I~---~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~-~~g~I~~Lv~L 453 (584)
T 3l6x_A 378 ALRNLAVDARNKELIG---KHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLR-ETQGIEKLVLI 453 (584)
T ss_dssp HHHHHHTTCSCHHHHH---HHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHH-HTTHHHHHHHH
T ss_pred HHHHHhCChhHHHHHH---hCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHH-HCCChHHHHHH
Confidence 9999999988876551 24889999999976 368889999999999988887766665 67899999999
Q ss_pred hcCCCCChHHHHHHHHHHHHhhcCCCcchhHHhh
Q 012466 387 IKTPHPVPEVCRKAAMILESLVSEPQNRVLLLAY 420 (463)
Q Consensus 387 l~~~~~~~em~rrAA~~L~~l~~~p~n~~~ll~~ 420 (463)
+..++..+.+.|-||..|.+|..++++|..+...
T Consensus 454 L~s~~~~~~v~k~Aa~vL~nl~~~~elr~~~kk~ 487 (584)
T 3l6x_A 454 NKSGNRSEKEVRAAALVLQTIWGYKELRKPLEKE 487 (584)
T ss_dssp HTCSSSCHHHHHHHHHHHHHHHTSHHHHHHHHTT
T ss_pred HhCCCCChHHHHHHHHHHHHHHcCHHHHHHHHHc
Confidence 9876556778999999999999999999888653
No 15
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=98.24 E-value=8e-06 Score=90.70 Aligned_cols=218 Identities=16% Similarity=0.184 Sum_probs=160.5
Q ss_pred hhhhhhcCCCCCCcHHHHhhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHH
Q 012466 216 ASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVE 295 (463)
Q Consensus 216 as~ILRNLSf~~~N~~~LA~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~ 295 (463)
++.+|.|++-..+|...+...+.++..|+..+... ++.+.|.++.-+|.+++..-+-. ..|. ....+.
T Consensus 170 A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~--~d~~vr~~Aa~aL~~Ls~~~~~~---------~~i~-~~g~I~ 237 (780)
T 2z6g_A 170 AAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNT--NDVETARCTSGTLHNLSHHREGL---------LAIF-KSGGIP 237 (780)
T ss_dssp HHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHTSHHHH---------HHHH-HTTHHH
T ss_pred HHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCC--CCHHHHHHHHHHHHHHhCCchhH---------HHHH-HcCCHH
Confidence 57788888888888888888889999999888754 35789999999999998652110 0122 223778
Q ss_pred HHHHhhCCCChHHHHHHHHHHHhhcCCCCCc-cccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhh
Q 012466 296 AIMGILGSPFKAWHCAAAELLGRLIINPDNE-PFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLA 374 (463)
Q Consensus 296 tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne-~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia 374 (463)
.|..+|.+++......|+.+|.+||....+. ..+.. ...+..++.+|.-++..++..++++|..++..+.+.+..+.
T Consensus 238 ~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~--~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~ 315 (780)
T 2z6g_A 238 ALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRL--AGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIIL 315 (780)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHH--TTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHH--cCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 8999999999999999999999999875442 11110 12677889999888889999999999999987887877766
Q ss_pred cchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCcchhHHhhH--HHHHHHHh-ccchhHHHHHHHHHHHhcCC
Q 012466 375 SERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLLAYE--NAFAEILF-SDGRYSDTFARILYELTSRP 449 (463)
Q Consensus 375 ~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~~p~n~~~ll~~E--~~l~~i~~-sD~~~~~~~~~iL~~l~~~~ 449 (463)
.. +.|..||+++..+. .......|+..|.+|+..++|+..++.-. ..|..+.- .|+.+....+.+|..|++..
T Consensus 316 ~~-~~i~~Lv~lL~~~~-~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~ 391 (780)
T 2z6g_A 316 AS-GGPQALVNIMRTYT-YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAA 391 (780)
T ss_dssp TT-THHHHHHHHHTTCC-CHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred Hc-CCHHHHHHHHhcCC-HHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccc
Confidence 54 78999999998763 23344567889999999999998876432 12222111 25556666667777776554
No 16
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.22 E-value=2.1e-05 Score=81.90 Aligned_cols=215 Identities=13% Similarity=0.085 Sum_probs=151.0
Q ss_pred hhhhhhcCCCC-CCcHHHHhhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHH
Q 012466 216 ASNIIRNFSFM-PDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAV 294 (463)
Q Consensus 216 as~ILRNLSf~-~~N~~~LA~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll 294 (463)
++.+|.|++.. ++|...+.++ ..+..|+.++... +.+++..++.+|.||+..-.- .+. .+. ....+
T Consensus 138 A~~~L~~l~~~~~~~~~~~~~~-g~i~~L~~lL~~~---~~~v~~~a~~aL~~l~~~~~~-------~~~-~i~-~~g~l 204 (528)
T 4b8j_A 138 AAWALTNIASGTSENTKVVIDH-GAVPIFVKLLGSS---SDDVREQAVWALGNVAGDSPK-------CRD-LVL-ANGAL 204 (528)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTCS---CHHHHHHHHHHHHHHHHTCHH-------HHH-HHH-HTTCH
T ss_pred HHHHHHHHhCCCHHHHHHHHhC-CcHHHHHHHhcCC---CHHHHHHHHHHHHHHhCCChh-------hHH-HHH-HCCcH
Confidence 57788888886 6777777765 6777777777763 467999999999999843110 000 011 12256
Q ss_pred HHHHHhh-CCCChHHHHHHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHh
Q 012466 295 EAIMGIL-GSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKL 373 (463)
Q Consensus 295 ~tL~~~L-~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~i 373 (463)
..|..+| .+.+......|+.+|++||....+.... ....++..++.+|..+|.+++..++.+|.+++.........
T Consensus 205 ~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~--~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~- 281 (528)
T 4b8j_A 205 LPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFE--QTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQA- 281 (528)
T ss_dssp HHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHH--HHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHH-
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHH--HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH-
Confidence 7788888 6778888999999999999886443221 12347888999999999999999999999999876654333
Q ss_pred hcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCC-CcchhHHhhH--HHHHHH-Hhc-cchhHHHHHHHHHHHhcC
Q 012466 374 ASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEP-QNRVLLLAYE--NAFAEI-LFS-DGRYSDTFARILYELTSR 448 (463)
Q Consensus 374 a~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~~p-~n~~~ll~~E--~~l~~i-~~s-D~~~~~~~~~iL~~l~~~ 448 (463)
....+.|..|+.+|.++ ++++...|+.+|.+|+... .++..++... ..|..+ .-. ++.+....+.+|..++.+
T Consensus 282 ~~~~g~v~~Lv~lL~~~--~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~ 359 (528)
T 4b8j_A 282 VIEAGVCPRLVELLLHP--SPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG 359 (528)
T ss_dssp HHHTTCHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHcCHHHHHHHHHcCC--ChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC
Confidence 33558999999999877 5788899999999999854 3333333211 122222 223 566777777777777764
No 17
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.20 E-value=1.2e-05 Score=83.69 Aligned_cols=152 Identities=20% Similarity=0.186 Sum_probs=115.9
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHhhcCCCCC-ccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHH
Q 012466 294 VEAIMGILGSPFKAWHCAAAELLGRLIINPDN-EPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLK 372 (463)
Q Consensus 294 l~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~N-e~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ 372 (463)
+..|..+|.++|......|+.+|.+||..+++ ...+.. ...+..++++|..++.+++..+..+|.+|+..+++.+..
T Consensus 4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~--~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQ--LGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHH--TTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHH--cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 35677888899999999999999999975543 212221 127889999999999999999999999999987878777
Q ss_pred hhcchhHHHHHHHhhc-CCCCChHHHHHHHHHHHHhhcCCCcchhHHhhHHHHHHH-Hhc-------------------c
Q 012466 373 LASERWAIDRLLRVIK-TPHPVPEVCRKAAMILESLVSEPQNRVLLLAYENAFAEI-LFS-------------------D 431 (463)
Q Consensus 373 ia~~~~~V~~LV~Ll~-~~~~~~em~rrAA~~L~~l~~~p~n~~~ll~~E~~l~~i-~~s-------------------D 431 (463)
|.. .|.|..||++|. ++ ++++.+.|+.+|.+|+.+++||..++. ..+..+ .+. |
T Consensus 82 i~~-~G~i~~Lv~lL~~~~--~~~~~~~a~~aL~nLa~~~~~~~~i~~--g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~ 156 (457)
T 1xm9_A 82 TRR-QNGIREAVSLLRRTG--NAEIQKQLTGLLWNLSSTDELKEELIA--DALPVLADRVIIPFSGWCDGNSNMSREVVD 156 (457)
T ss_dssp HHH-TTCHHHHHHHHTTCC--CHHHHHHHHHHHHHHHTSSSTHHHHHH--HHHHHHHHHTTHHHHTCC---------CCC
T ss_pred HHH-cCCHHHHHHHHhhCC--CHHHHHHHHHHHHHHhcCHHhHHHHHh--ccHHHHHHHHhccccccccCccchhccccc
Confidence 764 489999999998 54 778999999999999999999997764 222221 111 3
Q ss_pred chhHHHHHHHHHHHhcCCCcc
Q 012466 432 GRYSDTFARILYELTSRPNNK 452 (463)
Q Consensus 432 ~~~~~~~~~iL~~l~~~~~~~ 452 (463)
..+-..-+.+|+.|++.+.++
T Consensus 157 ~~v~~~a~~aL~nLs~~~~~~ 177 (457)
T 1xm9_A 157 PEVFFNATGCLRNLSSADAGR 177 (457)
T ss_dssp HHHHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHH
Confidence 344446777888888765443
No 18
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.17 E-value=3.4e-05 Score=77.52 Aligned_cols=216 Identities=14% Similarity=0.098 Sum_probs=147.4
Q ss_pred hhhhhhcCCCCCC-cHHHHhhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHH
Q 012466 216 ASNIIRNFSFMPD-NEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAV 294 (463)
Q Consensus 216 as~ILRNLSf~~~-N~~~LA~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll 294 (463)
++.+|.|++.... +...+.+ ..++..|+.++... .+.+++..++.++.|++..-+-. . .. .+ ...++
T Consensus 127 a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~~l~~~--~~~~v~~~a~~~L~~l~~~~~~~----~-~~--~~--~~~~l 194 (450)
T 2jdq_A 127 AVWALGNIAGDSTMCRDYVLD-CNILPPLLQLFSKQ--NRLTMTRNAVWALSNLCRGKSPP----P-EF--AK--VSPCL 194 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH-TTCHHHHHHHTTSC--CCHHHHHHHHHHHHHHHCCSSSC----C-CG--GG--TGGGH
T ss_pred HHHHHHHHccCCHHHHHHHHH-CCCHHHHHHHhcCC--CCHHHHHHHHHHHHHHhCCCCCC----C-CH--HH--HHHHH
Confidence 5777888887643 4444443 46677777777642 34689999999999999543110 0 00 11 13467
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHhhcCCCC-CccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHh
Q 012466 295 EAIMGILGSPFKAWHCAAAELLGRLIINPD-NEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKL 373 (463)
Q Consensus 295 ~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~-Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~i 373 (463)
..|..++.+.|......++.+|++|+.... +...+.. ..++..++.+|..+|.+++..++.+|.+++......+..+
T Consensus 195 ~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 272 (450)
T 2jdq_A 195 NVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVID--AGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVI 272 (450)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHH--TTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHH--cCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHH
Confidence 888899999999899999999999997542 1111110 1267788889988999999999999999999877655444
Q ss_pred hcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhc-CCCcchhHHh--hHHHHHH-HHhccchhHHHHHHHHHHHhcC
Q 012466 374 ASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVS-EPQNRVLLLA--YENAFAE-ILFSDGRYSDTFARILYELTSR 448 (463)
Q Consensus 374 a~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~-~p~n~~~ll~--~E~~l~~-i~~sD~~~~~~~~~iL~~l~~~ 448 (463)
. ..+.+..|+.++.++ ++++.+.|+.+|.+|+. .+++...++. .=+.|.. +.-.|+++....+.+|..+..+
T Consensus 273 ~-~~~~l~~L~~ll~~~--~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 273 L-NCSALQSLLHLLSSP--KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSG 348 (450)
T ss_dssp H-TTTHHHHHHHHTTCS--SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred H-HCccHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 4 347999999999875 77889999999999997 4444443331 1112222 2224667777777777777654
No 19
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=98.16 E-value=9e-06 Score=84.50 Aligned_cols=189 Identities=19% Similarity=0.162 Sum_probs=133.9
Q ss_pred HHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHHHHHhhcC
Q 012466 242 TVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELLGRLII 321 (463)
Q Consensus 242 lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~ 321 (463)
.|+.++... +.+++.++...+.+++..-+ +....+. ..-.+..|..+|.+++...+..|..+|.+|+.
T Consensus 6 ~lv~~L~s~---~~~~q~~A~~~L~~l~~~~~--------~~~~~i~-~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~ 73 (457)
T 1xm9_A 6 KAVQYLSSQ---DEKYQAIGAYYIQHTCFQDE--------SAKQQVY-QLGGICKLVDLLRSPNQNVQQAAAGALRNLVF 73 (457)
T ss_dssp HHHHHHHSS---CTHHHHHHHHHHHHHTSSCS--------SHHHHHH-HTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHCCC---CHHHHHHHHHHHHHHHcCCh--------HHHHHHH-HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 344455543 34799999999999984211 1111121 23367889999999999999999999999998
Q ss_pred C-CCCccccCCCchHHHHHHHHhcC-CcHHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhcC--------CC
Q 012466 322 N-PDNEPFLLPFVPQIHKRLVDLMS-LPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKT--------PH 391 (463)
Q Consensus 322 ~-~~Ne~~ll~~~p~i~~rlv~lL~-l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~~--------~~ 391 (463)
. ++|...+... ..+..++++|. .++.++++.+..+|++|+.. +..+..|.. +.|..||.+|.. ++
T Consensus 74 ~~~~~k~~i~~~--G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~--g~i~~Lv~ll~~~~s~~~~~~~ 148 (457)
T 1xm9_A 74 RSTTNKLETRRQ--NGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA--DALPVLADRVIIPFSGWCDGNS 148 (457)
T ss_dssp SCHHHHHHHHHT--TCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH--HHHHHHHHHTTHHHHTCC----
T ss_pred CCHHHHHHHHHc--CCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh--ccHHHHHHHHhccccccccCcc
Confidence 5 5554443211 14677888898 78899999999999999987 556666765 999999999932 21
Q ss_pred ------CChHHHHHHHHHHHHhhcCCCcchhHHhhHHH---HHHHHh-------ccchhHHHHHHHHHHHhc
Q 012466 392 ------PVPEVCRKAAMILESLVSEPQNRVLLLAYENA---FAEILF-------SDGRYSDTFARILYELTS 447 (463)
Q Consensus 392 ------~~~em~rrAA~~L~~l~~~p~n~~~ll~~E~~---l~~i~~-------sD~~~~~~~~~iL~~l~~ 447 (463)
..++|.|.|+.+|.+|++.|+||..+...|.. |..+.- .|.++.+.-..+|..|+.
T Consensus 149 ~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~ 220 (457)
T 1xm9_A 149 NMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSY 220 (457)
T ss_dssp -----CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTT
T ss_pred chhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhccc
Confidence 34678999999999999999999998855333 333222 255655555556666653
No 20
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=98.15 E-value=2.1e-05 Score=82.23 Aligned_cols=215 Identities=14% Similarity=0.130 Sum_probs=151.6
Q ss_pred hhhhhhcCCCC-CCcHHHHhhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHH
Q 012466 216 ASNIIRNFSFM-PDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAV 294 (463)
Q Consensus 216 as~ILRNLSf~-~~N~~~LA~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll 294 (463)
++..|.|++.. +++...+.. ..++..|+.++.. .+.+++..++.+|.|++..-+-. ... .+ ...++
T Consensus 193 A~~aL~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~---~~~~v~~~a~~~L~~L~~~~~~~------~~~-~~--~~~~l 259 (530)
T 1wa5_B 193 AIWALGNVAGDSTDYRDYVLQ-CNAMEPILGLFNS---NKPSLIRTATWTLSNLCRGKKPQ------PDW-SV--VSQAL 259 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH-TTCHHHHHHGGGS---CCHHHHHHHHHHHHHHHCCSSSC------CCH-HH--HGGGH
T ss_pred HHHHHHHHhCCCccchHHHHH-cCcHHHHHHHhcc---CCHHHHHHHHHHHHHHhCCCCCC------CcH-HH--HHhHH
Confidence 57788888876 455555555 4677777777765 45689999999999999542100 000 11 23477
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCCch-HHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHh
Q 012466 295 EAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVP-QIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKL 373 (463)
Q Consensus 295 ~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p-~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~i 373 (463)
..|..+|.+.|......|+.+|+.|+..... .+..... .++..++.+|..++..++..++.+|.+++..+......+
T Consensus 260 ~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~--~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 337 (530)
T 1wa5_B 260 PTLAKLIYSMDTETLVDACWAISYLSDGPQE--AIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVV 337 (530)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHHSSCHH--HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhCCCHH--HHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHH
Confidence 8899999999988999999999999965321 1111111 267788999998999999999999999998876654444
Q ss_pred hcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcC-CCcchhHHh--hHHHHHH-HHhccchhHHHHHHHHHHHhcC
Q 012466 374 ASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSE-PQNRVLLLA--YENAFAE-ILFSDGRYSDTFARILYELTSR 448 (463)
Q Consensus 374 a~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~~-p~n~~~ll~--~E~~l~~-i~~sD~~~~~~~~~iL~~l~~~ 448 (463)
. ..+.+..|+.++.++ ++++.+.|+.+|.+|+.. +++...++. .=+.|.. +.-.|+.+....+.+|..+...
T Consensus 338 ~-~~~~l~~L~~lL~~~--~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 338 I-NAGVLPALRLLLSSP--KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG 413 (530)
T ss_dssp H-HTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred H-HcchHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 3 458999999999876 678899999999999974 444443331 1122222 2235777888888888877664
No 21
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=98.13 E-value=1.3e-05 Score=82.36 Aligned_cols=183 Identities=17% Similarity=0.193 Sum_probs=137.6
Q ss_pred hhhhhhcCCCCCCcHHHHhhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHH
Q 012466 216 ASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVE 295 (463)
Q Consensus 216 as~ILRNLSf~~~N~~~LA~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~ 295 (463)
+..+|+|++..++|...+.+. ..+..|+.++... +.+++++++.++.|++....- . .. ...++.
T Consensus 206 a~~~L~~l~~~~~~~~~~~~~-g~~~~L~~ll~~~---~~~~~~~a~~~L~~l~~~~~~-----~------~~-~~~~i~ 269 (529)
T 1jdh_A 206 TSRVLKVLSVCSSNKPAIVEA-GGMQALGLHLTDP---SQRLVQNCLWTLRNLSDAATK-----Q------EG-MEGLLG 269 (529)
T ss_dssp HHHHHHHHTTSTTHHHHHHHT-THHHHHHTTTTSS---CHHHHHHHHHHHHHHHTTCTT-----C------SC-CHHHHH
T ss_pred HHHHHHHHhcCcccHHHHHHC-CCHHHHHHHHhCC---ChHHHHHHHHHHHHHhcCChh-----h------HH-HHhHHH
Confidence 577899999999999888874 5777777777654 467999999999999965311 0 01 245788
Q ss_pred HHHHhhCCCChHHHHHHHHHHHhhcCCCC-CccccCCCchHHHHHHHHhcCCc--HHHHHHHHHHHHHHhhccCHH---H
Q 012466 296 AIMGILGSPFKAWHCAAAELLGRLIINPD-NEPFLLPFVPQIHKRLVDLMSLP--AFDAQAAAVGALYNLAEVNVD---C 369 (463)
Q Consensus 296 tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~-Ne~~ll~~~p~i~~rlv~lL~l~--D~~Ll~aaLe~LY~Lt~l~~~---~ 369 (463)
.|..++.+.|......|..+|++|+.... |...+... ..+..++++|... +.+++..++.+|.+++..+.. .
T Consensus 270 ~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~--~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 347 (529)
T 1jdh_A 270 TLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV--GGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMA 347 (529)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHT--THHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHc--CChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHH
Confidence 99999999999999999999999988642 33222211 1677788888652 268999999999999886422 3
Q ss_pred HHHhhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCcchhHH
Q 012466 370 RLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLL 418 (463)
Q Consensus 370 ~~~ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~~p~n~~~ll 418 (463)
+..+ ...+.|..|+.++.+++ ..++.+.|+.+|.+++..|+|+..+.
T Consensus 348 ~~~i-~~~~~i~~L~~lL~~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~ 394 (529)
T 1jdh_A 348 QNAV-RLHYGLPVVVKLLHPPS-HWPLIKATVGLIRNLALCPANHAPLR 394 (529)
T ss_dssp HHHH-HHTTCHHHHHHTTSTTC-CHHHHHHHHHHHHHHTTSGGGHHHHH
T ss_pred HHHH-HHcCChhHHHHHhcccc-chHHHHHHHHHHHHHhcChhhhHHHH
Confidence 3333 35567999999998763 35788889999999999999987665
No 22
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=98.12 E-value=2.8e-05 Score=80.89 Aligned_cols=216 Identities=14% Similarity=0.129 Sum_probs=149.2
Q ss_pred hhhhhhcCCCC-CCcHHHHhhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHH
Q 012466 216 ASNIIRNFSFM-PDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAV 294 (463)
Q Consensus 216 as~ILRNLSf~-~~N~~~LA~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll 294 (463)
++..|.|++.. +.+...+.++ ..+..|+.++..+ .+.+++.++..+|.|++..-.-. .. .+ ...++
T Consensus 180 a~~aL~~l~~~~~~~~~~i~~~-g~l~~Ll~lL~~~--~~~~v~~~a~~~L~~L~~~~~~~-------~~-~~--~~~~l 246 (528)
T 4b8j_A 180 AVWALGNVAGDSPKCRDLVLAN-GALLPLLAQLNEH--TKLSMLRNATWTLSNFCRGKPQP-------SF-EQ--TRPAL 246 (528)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHT-TCHHHHHHTCCTT--CCHHHHHHHHHHHHHHHCSSSCC-------CH-HH--HTTHH
T ss_pred HHHHHHHHhCCChhhHHHHHHC-CcHHHHHHHHhcC--CCHHHHHHHHHHHHHHHcCCCCC-------cH-HH--HHHHH
Confidence 46778888755 4445555543 5666666666433 35689999999999999653111 00 11 23478
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCCch-HHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHh
Q 012466 295 EAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVP-QIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKL 373 (463)
Q Consensus 295 ~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p-~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~i 373 (463)
..|..+|.+.|......|+.+|++|+....+. +..... .++..++.+|..++..++..++.+|.+++..+......+
T Consensus 247 ~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~--~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~ 324 (528)
T 4b8j_A 247 PALARLIHSNDEEVLTDACWALSYLSDGTNDK--IQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCI 324 (528)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHH--HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHH--HHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88999999999999999999999999664431 111111 267789999999999999999999999999876655544
Q ss_pred hcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCC-CcchhHHhh--HHHHHH-HHhccchhHHHHHHHHHHHhcC
Q 012466 374 ASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEP-QNRVLLLAY--ENAFAE-ILFSDGRYSDTFARILYELTSR 448 (463)
Q Consensus 374 a~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~~p-~n~~~ll~~--E~~l~~-i~~sD~~~~~~~~~iL~~l~~~ 448 (463)
. ..+.|..|+.++.+++ ++++.+.|+.+|.+|+... +....++.. =+.|.. +.-.|..+....+..|..+...
T Consensus 325 ~-~~~~l~~L~~lL~~~~-~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 325 I-DHQALPCLLSLLTQNL-KKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp H-TTTHHHHHHHHHHSCC-CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred H-HhhhHHHHHHHHcCCC-cHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 4 4789999999998652 6778999999999999743 223333211 122222 2234777777777777777655
No 23
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=98.06 E-value=1.1e-05 Score=77.81 Aligned_cols=149 Identities=22% Similarity=0.234 Sum_probs=114.9
Q ss_pred HHHHHHhhCCCCh--HHHHHHHHHHHhhcCC-CCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHH
Q 012466 294 VEAIMGILGSPFK--AWHCAAAELLGRLIIN-PDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCR 370 (463)
Q Consensus 294 l~tL~~~L~S~Dr--~~~l~aLE~L~rLs~~-~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~ 370 (463)
+..+..+|.|+|. ..+..|..+|.+||.. +.|...+... ..+..+|++|..++.++++.+..+|.+|+..+++.+
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~--G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQL--RGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHT--THHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHc--CCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 5677889999987 7778888999999964 4554333321 157889999999999999999999999999888887
Q ss_pred HHhhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCcchhHHhhHHHHHHHH---h-----------------c
Q 012466 371 LKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLLAYENAFAEIL---F-----------------S 430 (463)
Q Consensus 371 ~~ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~~p~n~~~ll~~E~~l~~i~---~-----------------s 430 (463)
..|+. .|.|..||.+|... +..++.+.|+.+|.+|+..++||..+.. + .+--+. + +
T Consensus 88 ~~I~~-~GaI~~Lv~lL~~~-~~~~~~e~a~~aL~nLS~~~~~k~~i~~-~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~ 163 (233)
T 3tt9_A 88 LEVAE-LNGVPRLLQVLKQT-RDLETKKQITGLLWNLSSNDKLKNLMIT-E-ALLTLTENIIIPFSGWPEGDYPKANGLL 163 (233)
T ss_dssp HHHHH-TTHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHTSGGGHHHHHH-H-HHHHHCCCCCHHHHCCCGGGCCCCCTTC
T ss_pred HHHHH-cCCHHHHHHHHccC-CCHHHHHHHHHHHHHHHcChhhHHHHHh-c-cHHHHHHHHhccccCCcccccccccccc
Confidence 77765 58999999999742 2677888899999999999999998865 2 222221 1 1
Q ss_pred cchhHHHHHHHHHHHhcC
Q 012466 431 DGRYSDTFARILYELTSR 448 (463)
Q Consensus 431 D~~~~~~~~~iL~~l~~~ 448 (463)
|..+-.--+.+|.-|++.
T Consensus 164 ~~~v~~na~~~L~nLss~ 181 (233)
T 3tt9_A 164 DFDIFYNVTGCLRNMSSA 181 (233)
T ss_dssp CHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHhcC
Confidence 446666678888989874
No 24
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=98.05 E-value=0.00014 Score=72.89 Aligned_cols=215 Identities=14% Similarity=0.083 Sum_probs=147.5
Q ss_pred hhhhhhcCCCC-CCcHHHHhhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCcc-ccccCCCcccccccchhHHH
Q 012466 216 ASNIIRNFSFM-PDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLD-LRIFSSSKQSYIKITREKRA 293 (463)
Q Consensus 216 as~ILRNLSf~-~~N~~~LA~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~-L~~~~~s~~~~l~i~~~~~l 293 (463)
++.+|+|++.. +++...+.+ ..++..|+.++... +.++|..++.+|.||+..-. .. . .+. ....
T Consensus 85 a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~lL~~~---~~~vr~~a~~~L~~l~~~~~~~~--------~-~~~-~~~~ 150 (450)
T 2jdq_A 85 SAWVLTNIASGNSLQTRIVIQ-AGAVPIFIELLSSE---FEDVQEQAVWALGNIAGDSTMCR--------D-YVL-DCNI 150 (450)
T ss_dssp HHHHHHHHHSSCHHHHHHHHH-TTHHHHHHHHTTCS---CHHHHHHHHHHHHHHHTTCHHHH--------H-HHH-HTTC
T ss_pred HHHHHHHHhcCCHHHHHHHHh-CCCHHHHHHHHcCC---CHHHHHHHHHHHHHHccCCHHHH--------H-HHH-HCCC
Confidence 57788888764 566666654 56888888888763 56899999999999996421 10 0 010 1225
Q ss_pred HHHHHHhhCC-CChHHHHHHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHH
Q 012466 294 VEAIMGILGS-PFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLK 372 (463)
Q Consensus 294 l~tL~~~L~S-~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ 372 (463)
+..|..++.+ .+......|+.+|++|+....... -......++..++++|..+|.+++..++.+|.+++....+....
T Consensus 151 i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 229 (450)
T 2jdq_A 151 LPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPP-EFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQA 229 (450)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCC-CGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCC-CHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHH
Confidence 6778888875 677889999999999997652111 11122447778888888899999999999999999876554433
Q ss_pred hhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCcchhH-Hhh--HHHHHHHH-hccchhHHHHHHHHHHHhcC
Q 012466 373 LASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLL-LAY--ENAFAEIL-FSDGRYSDTFARILYELTSR 448 (463)
Q Consensus 373 ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~~p~n~~~l-l~~--E~~l~~i~-~sD~~~~~~~~~iL~~l~~~ 448 (463)
+ ...+.|..|+.++.+ +++++...|+.+|.+|+...++.... +.. =+.|..+. -.|+.+...-..+|..++.+
T Consensus 230 ~-~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~ 306 (450)
T 2jdq_A 230 V-IDAGVCRRLVELLMH--NDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAG 306 (450)
T ss_dssp H-HHTTTHHHHHHHTTC--SCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTS
T ss_pred H-HHcCcHHHHHHHHCC--CchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 3 346789999999974 47888999999999999887654322 211 11222221 13566666677777777654
No 25
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=98.02 E-value=2.2e-05 Score=82.55 Aligned_cols=220 Identities=11% Similarity=0.083 Sum_probs=150.2
Q ss_pred hhhhhhcCCCCCCcHHHHhhChhHHHHHHHhhhccCC--ChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHH
Q 012466 216 ASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVT--EDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRA 293 (463)
Q Consensus 216 as~ILRNLSf~~~N~~~LA~~~~ll~lLl~~l~~~~~--~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~l 293 (463)
++..|+|++...++.+.+......+..|+.++..+.. ....+..++.-++.|++..-+-. ..+.....+
T Consensus 163 A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~---------~~~~~~~~~ 233 (510)
T 3ul1_B 163 AVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPA---------PPLDAVEQI 233 (510)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSC---------CCHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccch---------hHHHHHHhH
Confidence 5778999998755544444445666667776665532 22457888999999998542211 011113457
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCc-cccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHH
Q 012466 294 VEAIMGILGSPFKAWHCAAAELLGRLIINPDNE-PFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLK 372 (463)
Q Consensus 294 l~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne-~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ 372 (463)
+..|..+|.++|......|..+|++|+....+. ..+.. ..++.+++++|..++..++..++.+|.+++..++..+..
T Consensus 234 lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~ 311 (510)
T 3ul1_B 234 LPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVK--KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQK 311 (510)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHT--TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHh--cccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHH
Confidence 888999999999999999999999998765432 11111 126778999999999999999999999999988776555
Q ss_pred hhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCcchhHHhhHH---HHHH-HHhccchhHHHHHHHHHHHhcC
Q 012466 373 LASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLLAYEN---AFAE-ILFSDGRYSDTFARILYELTSR 448 (463)
Q Consensus 373 ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~~p~n~~~ll~~E~---~l~~-i~~sD~~~~~~~~~iL~~l~~~ 448 (463)
+. ..+.+..|+.|++++ +.++.+.|+.+|.+|+....+....+.-+. .|.. +.-.|.++...-+..|.-++++
T Consensus 312 i~-~~g~l~~L~~LL~~~--~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~ 388 (510)
T 3ul1_B 312 VI-DAGALAVFPSLLTNP--KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG 388 (510)
T ss_dssp HH-HTTGGGGCC-CTTCS--SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH
T ss_pred Hh-hccchHHHHHHhcCC--CHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcc
Confidence 54 467889999999755 778899999999999986654333322111 1222 2224667766666666666654
Q ss_pred C
Q 012466 449 P 449 (463)
Q Consensus 449 ~ 449 (463)
.
T Consensus 389 ~ 389 (510)
T 3ul1_B 389 G 389 (510)
T ss_dssp C
T ss_pred C
Confidence 3
No 26
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=98.01 E-value=3e-05 Score=81.66 Aligned_cols=219 Identities=12% Similarity=0.117 Sum_probs=149.2
Q ss_pred hhhhhhcCCCC-CCcHHHHhhChhHHHHHHHhhhccC--CChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHH
Q 012466 216 ASNIIRNFSFM-PDNEVIMAQHRHCLETVFQCIEDHV--TEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKR 292 (463)
Q Consensus 216 as~ILRNLSf~-~~N~~~LA~~~~ll~lLl~~l~~~~--~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ 292 (463)
++..|.|++.. +++...+.++ ..+..|+.++..+. .....+..++.-++.|++..-.-. ..+.....
T Consensus 182 A~~aL~nLa~~~~~~r~~i~~~-g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~---------~~~~~~~~ 251 (529)
T 3tpo_A 182 AVWALGNIAGAGSAFRDLVIKH-GAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPA---------PPLDAVEQ 251 (529)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHT-TCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTC---------CCHHHHHH
T ss_pred HHHHHHHHhccCHHHHHHHHHc-CCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccch---------hhHHHHhh
Confidence 57789999876 5555555554 55666666665543 123467888899999988542211 01111345
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCc-cccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHH
Q 012466 293 AVEAIMGILGSPFKAWHCAAAELLGRLIINPDNE-PFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRL 371 (463)
Q Consensus 293 ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne-~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~ 371 (463)
++..|..+|.++|......|..+|+.|+....+. ..+.. ..++.+++++|..++..++..++.+|.+++..++....
T Consensus 252 ~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~--~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~ 329 (529)
T 3tpo_A 252 ILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVK--KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQ 329 (529)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHT--TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHh--ccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHH
Confidence 7888999999999999999999999999765431 11111 12677899999999999999999999999998876655
Q ss_pred HhhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCcchhHHhhHHH---HHH-HHhccchhHHHHHHHHHHHhc
Q 012466 372 KLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLLAYENA---FAE-ILFSDGRYSDTFARILYELTS 447 (463)
Q Consensus 372 ~ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~~p~n~~~ll~~E~~---l~~-i~~sD~~~~~~~~~iL~~l~~ 447 (463)
.+. ..+.+..|+.+++++ .+++.+.|+.+|.+|+....+....+.-... |.. +.-.|.++-..-+..|.-++.
T Consensus 330 ~i~-~~g~l~~L~~LL~~~--~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~ 406 (529)
T 3tpo_A 330 KVI-DAGALAVFPSLLTNP--KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTS 406 (529)
T ss_dssp HHH-HTTGGGGHHHHTTCS--SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHh-hcccHHHHHHHHcCC--CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHc
Confidence 444 467899999999865 6788999999999999866544333221111 111 222366666666666666655
Q ss_pred CC
Q 012466 448 RP 449 (463)
Q Consensus 448 ~~ 449 (463)
+.
T Consensus 407 ~~ 408 (529)
T 3tpo_A 407 GG 408 (529)
T ss_dssp HS
T ss_pred CC
Confidence 43
No 27
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=97.98 E-value=0.00012 Score=77.12 Aligned_cols=217 Identities=12% Similarity=0.136 Sum_probs=145.4
Q ss_pred hhhhhhhcCCCC-CCcHHHHhhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCcc-ccccCCCcccccccchhHH
Q 012466 215 GASNIIRNFSFM-PDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLD-LRIFSSSKQSYIKITREKR 292 (463)
Q Consensus 215 eas~ILRNLSf~-~~N~~~LA~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~-L~~~~~s~~~~l~i~~~~~ 292 (463)
+++.+|.|++.. ++|...+.+ ...+..|+.++... +.+++++++-+|+|||..-. .. . .+. ..-
T Consensus 139 ~Aa~aL~nia~~~~~~~~~vv~-~Gaip~Lv~LL~s~---~~~v~e~A~~aL~nLa~~~~~~r--------~-~i~-~~g 204 (529)
T 3tpo_A 139 ESAWALTNIASGTSEQTKAVVD-GGAIPAFISLLASP---HAHISEQAVWALGNIAGAGSAFR--------D-LVI-KHG 204 (529)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHH-TTHHHHHHHHTTCS---CHHHHHHHHHHHHHHHTTCHHHH--------H-HHH-HTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHcCC---CHHHHHHHHHHHHHHhccCHHHH--------H-HHH-HcC
Confidence 468889999764 456666665 45666777777664 45799999999999995421 11 0 011 122
Q ss_pred HHHHHHHhhCCCCh-----HHHHHHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCH
Q 012466 293 AVEAIMGILGSPFK-----AWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNV 367 (463)
Q Consensus 293 ll~tL~~~L~S~Dr-----~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~ 367 (463)
.+..|..+|.+++. ..+..+.-+|+.+|.+..+...+ .....++.-++.+|..+|.+++..+.-+|.+++....
T Consensus 205 ~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~-~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~ 283 (529)
T 3tpo_A 205 AIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPL-DAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPN 283 (529)
T ss_dssp CHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCH-HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCH
T ss_pred CcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhH-HHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhh
Confidence 46777888876653 34667888999999887653222 1123477888999999999999999999999999876
Q ss_pred HHHHHhhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCC-cchhHHhhH--HHHHHH-HhccchhHHHHHHHHH
Q 012466 368 DCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQ-NRVLLLAYE--NAFAEI-LFSDGRYSDTFARILY 443 (463)
Q Consensus 368 ~~~~~ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~~p~-n~~~ll~~E--~~l~~i-~~sD~~~~~~~~~iL~ 443 (463)
+.... ....+.+..||.++.++ ++++...|+.+|.+|+...+ ++..++... ..|..+ .-.++.+...-+.+|.
T Consensus 284 ~~~~~-v~~~g~i~~Lv~lL~~~--~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~ 360 (529)
T 3tpo_A 284 ERIEM-VVKKGVVPQLVKLLGAT--ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS 360 (529)
T ss_dssp HHHHH-HHTTTCHHHHHHHHTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHH
T ss_pred hhHHH-HHhccchHHHHHHhcCC--ChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 65444 44568999999999865 77788899999999998654 333332111 111111 1125555555666666
Q ss_pred HHhcCC
Q 012466 444 ELTSRP 449 (463)
Q Consensus 444 ~l~~~~ 449 (463)
.++.+.
T Consensus 361 nl~~~~ 366 (529)
T 3tpo_A 361 NITAGR 366 (529)
T ss_dssp HHHTSC
T ss_pred HHhccc
Confidence 665543
No 28
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=97.95 E-value=0.00015 Score=75.71 Aligned_cols=215 Identities=14% Similarity=0.093 Sum_probs=146.7
Q ss_pred hhhhhhcCCCC-CCcHHHHhhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHH
Q 012466 216 ASNIIRNFSFM-PDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAV 294 (463)
Q Consensus 216 as~ILRNLSf~-~~N~~~LA~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll 294 (463)
++.+|.|++.. +++...+.+ ...+..|+.++... +.+++..++.+|.||+..-+-. +. .+. ...++
T Consensus 151 A~~~L~~l~~~~~~~~~~~~~-~g~i~~Lv~lL~~~---~~~vr~~A~~aL~~l~~~~~~~-------~~-~~~-~~~~l 217 (530)
T 1wa5_B 151 AAWALTNIASGTSAQTKVVVD-ADAVPLFIQLLYTG---SVEVKEQAIWALGNVAGDSTDY-------RD-YVL-QCNAM 217 (530)
T ss_dssp HHHHHHHHTTSCHHHHHHHHH-TTCHHHHHHHHHHC---CHHHHHHHHHHHHHHHTTCHHH-------HH-HHH-HTTCH
T ss_pred HHHHHHHHhCCCHHHHHHHHH-CCCHHHHHHHHcCC---CHHHHHHHHHHHHHHhCCCccc-------hH-HHH-HcCcH
Confidence 57788888875 455555554 46677777777753 4679999999999999542100 00 011 12357
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHhhcCCC-CCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHh
Q 012466 295 EAIMGILGSPFKAWHCAAAELLGRLIINP-DNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKL 373 (463)
Q Consensus 295 ~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~-~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~i 373 (463)
..|..++.+.+......|+.+|++|+... .+.... ....++..++.+|..+|.+++..++.+|.+|+.........+
T Consensus 218 ~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~--~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~ 295 (530)
T 1wa5_B 218 EPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWS--VVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAV 295 (530)
T ss_dssp HHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHH--HHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 78888888888888999999999999875 332211 122377888999999999999999999999998876654444
Q ss_pred hcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCC-cchhHHhhH--HHHHHHH-hccchhHHHHHHHHHHHhcC
Q 012466 374 ASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQ-NRVLLLAYE--NAFAEIL-FSDGRYSDTFARILYELTSR 448 (463)
Q Consensus 374 a~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~~p~-n~~~ll~~E--~~l~~i~-~sD~~~~~~~~~iL~~l~~~ 448 (463)
. ..+.|..|+.++.++ ++++...|+.+|.+|+.... ....++... ..|..+. -.++.+...-+.+|..++.+
T Consensus 296 ~-~~~~v~~Lv~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~ 371 (530)
T 1wa5_B 296 I-DVRIPKRLVELLSHE--STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG 371 (530)
T ss_dssp H-HTTCHHHHHHGGGCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred H-hcCcHHHHHHHHCCC--ChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 3 457899999999854 77888899999999997643 333222110 1122211 12556666666677776654
No 29
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=97.95 E-value=4.3e-05 Score=85.71 Aligned_cols=200 Identities=17% Similarity=0.135 Sum_probs=137.0
Q ss_pred HHHhhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHH
Q 012466 231 VIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHC 310 (463)
Q Consensus 231 ~~LA~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l 310 (463)
+.+.+. +.+..|..++... +.++++.+.-++.|||..-+.. . .+- +.-.+..|..+|.+.+.....
T Consensus 489 ~~Vvea-GaVp~LV~LL~s~---s~~vqe~Aa~aL~NLA~d~~~r--------~-~Vv-~~Gaip~Lv~LL~s~~~~~k~ 554 (810)
T 3now_A 489 TVLANE-GITTALCALAKTE---SHNSQELIARVLNAVCGLKELR--------G-KVV-QEGGVKALLRMALEGTEKGKR 554 (810)
T ss_dssp HHHHHT-THHHHHHHHHTCC---CHHHHHHHHHHHHHHHTSHHHH--------H-HHH-HTTHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHC-cCHHHHHHHHcCC---CHHHHHHHHHHHHHHcCCHHHH--------H-HHH-HCCCHHHHHHHHccCCHHHHH
Confidence 344443 4666667666653 3579999999999999642221 1 111 233678888888888877889
Q ss_pred HHHHHHHhhcCCCCCccccCCC-chHHHHHHHHhcCCc-HHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhc
Q 012466 311 AAAELLGRLIINPDNEPFLLPF-VPQIHKRLVDLMSLP-AFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIK 388 (463)
Q Consensus 311 ~aLE~L~rLs~~~~Ne~~ll~~-~p~i~~rlv~lL~l~-D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~ 388 (463)
.|..+|++|+...+++..+... .-..+..++++|... +......++.+|++|+..+++.+.+|.. .+.|+.|+.|+.
T Consensus 555 ~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~-aG~l~~Lv~LL~ 633 (810)
T 3now_A 555 HATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIK-EQGVSKIEYYLM 633 (810)
T ss_dssp HHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHHHHHc
Confidence 9999999999876554333221 112677889998744 2233456899999999999888777766 478999999999
Q ss_pred CCCCChHHHHHHHHHHHHhhcCCCcchhHHhhHHHHHH-HHh---ccchhHHHHHHHHHHHhc
Q 012466 389 TPHPVPEVCRKAAMILESLVSEPQNRVLLLAYENAFAE-ILF---SDGRYSDTFARILYELTS 447 (463)
Q Consensus 389 ~~~~~~em~rrAA~~L~~l~~~p~n~~~ll~~E~~l~~-i~~---sD~~~~~~~~~iL~~l~~ 447 (463)
++ ++.+-+.|+.+|.+|+..|+++..++--..++-. +.+ .|..+...-+..|.-+++
T Consensus 634 s~--~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~ 694 (810)
T 3now_A 634 ED--HLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITS 694 (810)
T ss_dssp SC--CTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred CC--CHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhC
Confidence 76 4566888999999999999998888720122222 112 245555555555555555
No 30
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.91 E-value=1.6e-05 Score=78.98 Aligned_cols=217 Identities=16% Similarity=0.113 Sum_probs=148.9
Q ss_pred hhhhhhhcCCCCCCcHHHHhhChhHHHHHHH-hhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHH
Q 012466 215 GASNIIRNFSFMPDNEVIMAQHRHCLETVFQ-CIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRA 293 (463)
Q Consensus 215 eas~ILRNLSf~~~N~~~LA~~~~ll~lLl~-~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~l 293 (463)
.+.-+|.+++-..+|+..+.+.-.+ ..|+. ++.. .+.++|+++.-+++||+..-+-. +. .+- ..-.
T Consensus 59 ~Al~~L~~lv~~~dna~~~~~~G~l-~~Lv~~lL~s---~~~~vr~~Aa~~Lg~ia~~n~~~-------~~-~vv-~~g~ 125 (296)
T 1xqr_A 59 GALELLADLCENMDNAADFCQLSGM-HLLVGRYLEA---GAAGLRWRAAQLIGTCSQNVAAI-------QE-QVL-GLGA 125 (296)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHTTHH-HHHHHTTTTC---SSHHHHHHHHHHHHHHHTTCHHH-------HH-HHH-HTTH
T ss_pred HHHHHHHHHHhChhhHHHHHHcCCH-HHHHHHHHcC---CCHHHHHHHHHHHHHHHhCCHHH-------HH-HHH-HCCC
Confidence 4678888888888999999876655 45555 6664 34689999999999999542110 00 011 1236
Q ss_pred HHHHHHhhCC-CChHHHHHHHHHHHhhcCCCCCccccCCCch-HHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHH
Q 012466 294 VEAIMGILGS-PFKAWHCAAAELLGRLIINPDNEPFLLPFVP-QIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRL 371 (463)
Q Consensus 294 l~tL~~~L~S-~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p-~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~ 371 (463)
+..|..+|.+ ++......|+-+|+.|+.+..+ ....+.. ..+..++++|..+|..++..+.-+|.+++..+.+.+.
T Consensus 126 l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~--~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~ 203 (296)
T 1xqr_A 126 LRKLLRLLDRDACDTVRVKALFAISCLVREQEA--GLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKG 203 (296)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHH--HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred HHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcH--HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHH
Confidence 7788888875 4677888999999999875432 1111111 1677788888889999999999999999998776656
Q ss_pred HhhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcC-CCcch--------hHHhhHHHHHHHHhcc--chhHHHHHH
Q 012466 372 KLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSE-PQNRV--------LLLAYENAFAEILFSD--GRYSDTFAR 440 (463)
Q Consensus 372 ~ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~~-p~n~~--------~ll~~E~~l~~i~~sD--~~~~~~~~~ 440 (463)
.+. ..+.|..||.||.++ ++++...|+.+|.+|++. +++.. +....|++.-.+---| +..-....+
T Consensus 204 ~vv-~~g~i~~Lv~LL~~~--d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~ 280 (296)
T 1xqr_A 204 TLC-SMGMVQQLVALVRTE--HSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEK 280 (296)
T ss_dssp HHH-HTTHHHHHHHHHTSC--CSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHH-HcCCHHHHHHHHcCC--ChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHH
Confidence 555 468999999999877 567788999999999988 32222 2233444443332223 355566666
Q ss_pred HHHHHhcCC
Q 012466 441 ILYELTSRP 449 (463)
Q Consensus 441 iL~~l~~~~ 449 (463)
|+-.+-+.+
T Consensus 281 il~~~f~~~ 289 (296)
T 1xqr_A 281 LLQTCFSSP 289 (296)
T ss_dssp HHHHHCC--
T ss_pred HHHHHcCCC
Confidence 666665544
No 31
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=97.89 E-value=0.00017 Score=80.29 Aligned_cols=203 Identities=19% Similarity=0.183 Sum_probs=143.7
Q ss_pred hHHHHHHHhhhccCCC----------hHHH-HHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCCh
Q 012466 238 HCLETVFQCIEDHVTE----------DEEL-VTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFK 306 (463)
Q Consensus 238 ~ll~lLl~~l~~~~~~----------d~eL-r~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr 306 (463)
..++.|+.+++..... ...+ +..+|-.|.|||..=+=. .++ .+. .|-.....+..|..+|.+...
T Consensus 545 ~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~--~E~-~r~-~Ii~~~ga~~~L~~LL~s~n~ 620 (778)
T 3opb_A 545 NAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSD--GEE-VCK-HIVSTKVYWSTIENLMLDENV 620 (778)
T ss_dssp THHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHH--HHH-HHH-HHHHSHHHHHHHHHGGGCSSH
T ss_pred cchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCccc--chH-HHH-HHHHhcCHHHHHHHHHhCCCH
Confidence 5667777777621211 1123 778999999999542100 000 011 122122478889999998888
Q ss_pred HHHHHHHHHHHhhcCCCCC--ccccCCCchH---HHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHH
Q 012466 307 AWHCAAAELLGRLIINPDN--EPFLLPFVPQ---IHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAID 381 (463)
Q Consensus 307 ~~~l~aLE~L~rLs~~~~N--e~~ll~~~p~---i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~ 381 (463)
.+...|.|++++|+.++.. ..++..-.|. =+.-+|.|+...|.+.+.++.-+|.++|...+..|..+....+.|+
T Consensus 621 ~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~ 700 (778)
T 3opb_A 621 PLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIE 700 (778)
T ss_dssp HHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHH
Confidence 8899999999999987664 2344333354 2777899999999999999999999999989889999999999999
Q ss_pred HHHHhhcCCCCChHHHHHHHHHHHHhhc-CCCcch-----hHH---hhHHHHHHHHhc---cchhHHHHHHHHHH
Q 012466 382 RLLRVIKTPHPVPEVCRKAAMILESLVS-EPQNRV-----LLL---AYENAFAEILFS---DGRYSDTFARILYE 444 (463)
Q Consensus 382 ~LV~Ll~~~~~~~em~rrAA~~L~~l~~-~p~n~~-----~ll---~~E~~l~~i~~s---D~~~~~~~~~iL~~ 444 (463)
.|+.++...|++.++..|++..+.||+. .|+|.. .++ ++-..|..+.-+ |+.+.+-+-.+|-.
T Consensus 701 ~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~lk~~~~~~e~~~~~~~~~~~ 775 (778)
T 3opb_A 701 NAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRGDSGPEFSAAIPVILAK 775 (778)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHHHSSSSSCSSTTSHHHHHHTT
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 9999999888899999999999999995 555543 332 344445544332 66666666665543
No 32
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=97.88 E-value=5.5e-05 Score=81.99 Aligned_cols=151 Identities=18% Similarity=0.202 Sum_probs=118.7
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHhhcC-CCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhcc-CHHHH
Q 012466 293 AVEAIMGILGSPFKAWHCAAAELLGRLII-NPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEV-NVDCR 370 (463)
Q Consensus 293 ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~-~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l-~~~~~ 370 (463)
.+..|..+|.++|...+..|..+|.+||. ++.|...+... ..+..+|++|..++.++++.+..+|.+|+.. +.+.+
T Consensus 49 ~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~--G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk 126 (584)
T 3l6x_A 49 ELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKL--KGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNK 126 (584)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT--THHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHH
T ss_pred cHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHc--CCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHH
Confidence 46778888999999899999999999996 45554333321 1678899999999999999999999999997 67777
Q ss_pred HHhhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCcchhHHhhHHHHHHH---H-------------------
Q 012466 371 LKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLLAYENAFAEI---L------------------- 428 (463)
Q Consensus 371 ~~ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~~p~n~~~ll~~E~~l~~i---~------------------- 428 (463)
..|+. .|.|..||+||..++ ..++.+.||.+|.+|+.+++|+..++. ..+-.+ .
T Consensus 127 ~~I~~-~GaIp~LV~LL~s~~-~~~~~e~aa~aL~nLS~~~~~k~~I~~--~alp~Lv~LL~~p~sg~~~~~~~~~k~~~ 202 (584)
T 3l6x_A 127 IAIKN-CDGVPALVRLLRKAR-DMDLTEVITGTLWNLSSHDSIKMEIVD--HALHALTDEVIIPHSGWEREPNEDCKPRH 202 (584)
T ss_dssp HHHHH-TTHHHHHHHHHHHCC-SHHHHHHHHHHHHHHTTSGGGHHHHHH--HTHHHHHHHTHHHHHCCC----------C
T ss_pred HHHHH-cCCHHHHHHHHcCCC-CHHHHHHHHHHHHHHhCCchhhHHHHh--ccHHHHHHHHhcccccccccccccccccc
Confidence 77765 589999999998753 567788899999999999999999862 232221 1
Q ss_pred hccchhHHHHHHHHHHHhcCC
Q 012466 429 FSDGRYSDTFARILYELTSRP 449 (463)
Q Consensus 429 ~sD~~~~~~~~~iL~~l~~~~ 449 (463)
..|+.|-.--+.+|..|++..
T Consensus 203 ~~d~~V~~nAa~~L~NLs~~~ 223 (584)
T 3l6x_A 203 IEWESVLTNTAGCLRNVSSER 223 (584)
T ss_dssp CCCHHHHHHHHHHHHHHTSSC
T ss_pred cccHHHHHHHHHHHHHHhcCC
Confidence 114577777888999998865
No 33
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=97.86 E-value=2.3e-05 Score=82.40 Aligned_cols=211 Identities=14% Similarity=0.144 Sum_probs=144.0
Q ss_pred hhhhhhcCCCCCCcHHHHhhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHH
Q 012466 216 ASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVE 295 (463)
Q Consensus 216 as~ILRNLSf~~~N~~~LA~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~ 295 (463)
++..+.|++....+...+..-..++..|..+++. .+.+++..+.-.+.+++..-+-. .. .+. ...+..
T Consensus 210 a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~---~~~~v~~~A~~aL~~L~~~~~~~-------~~-~i~-~~g~i~ 277 (510)
T 3ul1_B 210 LTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHH---NDPEVLADSCWAISYLTDGPNER-------IE-MVV-KKGVVP 277 (510)
T ss_dssp HHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTC---SCHHHHHHHHHHHHHHTSSCHHH-------HH-HHH-TTTCHH
T ss_pred HHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhc---CCHHHHHHHHHHHHHHhhchhhh-------HH-HHH-hcccch
Confidence 4566677766666666566556788888887765 45679999999999998542100 00 010 122567
Q ss_pred HHHHhhCCCChHHHHHHHHHHHhhcCCCCCc-cccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhh
Q 012466 296 AIMGILGSPFKAWHCAAAELLGRLIINPDNE-PFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLA 374 (463)
Q Consensus 296 tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne-~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia 374 (463)
.|..+|.+++...+..|+++|++|+...++. ..+.. ...+..++.+|..++.+++..+.-+|.+++..+......+.
T Consensus 278 ~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~--~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~ 355 (510)
T 3ul1_B 278 QLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVID--AGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVV 355 (510)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH--TTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred hhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhh--ccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 7888999999999999999999998754321 11111 01445567788889999999999999999998877655554
Q ss_pred cchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcC--CCcchhHHhh---HHHHHHHHhccchhHHHHHHHHH
Q 012466 375 SERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSE--PQNRVLLLAY---ENAFAEILFSDGRYSDTFARILY 443 (463)
Q Consensus 375 ~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~~--p~n~~~ll~~---E~~l~~i~~sD~~~~~~~~~iL~ 443 (463)
..+.|..|+.++..+ +.++-+.||.+|.+++.. ++++.+++.. +.....+...|+++.......|.
T Consensus 356 -~~g~i~~Lv~lL~~~--~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~ 426 (510)
T 3ul1_B 356 -NHGLVPFLVGVLSKA--DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAIS 426 (510)
T ss_dssp -HTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred -hcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 457999999999887 678899999999999874 4555555432 22222233347776665555444
No 34
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=97.82 E-value=8.2e-05 Score=82.60 Aligned_cols=213 Identities=16% Similarity=0.172 Sum_probs=144.8
Q ss_pred hhhhhhcCCCCCCcHHHHhhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHH
Q 012466 216 ASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVE 295 (463)
Q Consensus 216 as~ILRNLSf~~~N~~~LA~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~ 295 (463)
++..+|.. |...++ ...+..|+.++.. ++.++|+.++.+|.+|+..-.-. . .+......+.
T Consensus 135 a~~~l~~~-----~~~~i~--~g~ip~Lv~lL~~---~d~~vr~~A~~~L~~L~~~~~~~--------~-~i~~~~~~i~ 195 (780)
T 2z6g_A 135 VVNLINYQ-----DDAELA--TRAIPELTKLLND---EDQVVVNKAAVMVHQLSKKEASR--------H-AIMRSPQMVS 195 (780)
T ss_dssp HHHHHHHH-----HHHHHH--HHHHHHHHHHHHC---SCHHHHHHHHHHHHHHHTSHHHH--------H-HHTTCHHHHH
T ss_pred HHHHHHhh-----hHHHHH--hCCHHHHHHHHCC---CCHHHHHHHHHHHHHHhCCChhH--------H-HHHhccChHH
Confidence 34556632 555666 5677777777763 46789999999999999653211 0 1111234677
Q ss_pred HHHHhhCC-CChHHHHHHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhh
Q 012466 296 AIMGILGS-PFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLA 374 (463)
Q Consensus 296 tL~~~L~S-~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia 374 (463)
.|...|.+ .|......|+.+|.+|+..+.|...+... ..++.++++|.-++..++..++.+|.+|+......+. ..
T Consensus 196 ~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~--g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~-~v 272 (780)
T 2z6g_A 196 AIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKS--GGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKM-AV 272 (780)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHT--THHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHH-HH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHc--CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHH-HH
Confidence 77777764 47788899999999999887664333321 3788999999999999999999999999987655443 34
Q ss_pred cchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhc-CCCcchhHHhhHHH--HHHHHhc-c-chhHHHHHHHHHHHhcCC
Q 012466 375 SERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVS-EPQNRVLLLAYENA--FAEILFS-D-GRYSDTFARILYELTSRP 449 (463)
Q Consensus 375 ~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~-~p~n~~~ll~~E~~--l~~i~~s-D-~~~~~~~~~iL~~l~~~~ 449 (463)
...+.|..|+.++..+ +.++.+.|+..|.+|+. +++++..+....-- |..+.-+ + ..+....+.+|..|+..+
T Consensus 273 ~~~g~v~~Lv~lL~~~--~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~ 350 (780)
T 2z6g_A 273 RLAGGLQKMVALLNKT--NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCS 350 (780)
T ss_dssp HHTTHHHHHHHGGGCC--CHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTST
T ss_pred HHcCCHHHHHHHHhcC--CHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcCh
Confidence 4568999999999875 67778888889999986 57888776543321 1111111 1 222334466666666554
Q ss_pred Ccc
Q 012466 450 NNK 452 (463)
Q Consensus 450 ~~~ 452 (463)
.++
T Consensus 351 ~~~ 353 (780)
T 2z6g_A 351 SNK 353 (780)
T ss_dssp THH
T ss_pred HHH
Confidence 443
No 35
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=97.73 E-value=0.00032 Score=69.50 Aligned_cols=179 Identities=17% Similarity=0.237 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHH-hhCCCChHHHHHHHHHHHhhcCCCC-CccccCCC
Q 012466 255 EELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMG-ILGSPFKAWHCAAAELLGRLIINPD-NEPFLLPF 332 (463)
Q Consensus 255 ~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~-~L~S~Dr~~~l~aLE~L~rLs~~~~-Ne~~ll~~ 332 (463)
.|-|..+|+.|+++...+|-.. ....+. .+..|.. +|.+++......|+++|++++.+.. +...+...
T Consensus 54 ~e~k~~Al~~L~~lv~~~dna~------~~~~~G----~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~ 123 (296)
T 1xqr_A 54 QQEREGALELLADLCENMDNAA------DFCQLS----GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGL 123 (296)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHH------HHHHTT----HHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhChhhHH------HHHHcC----CHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHC
Confidence 4679999999999997766321 001112 5677788 9999999999999999999997643 22222211
Q ss_pred chHHHHHHHHhcCC-cHHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcC-
Q 012466 333 VPQIHKRLVDLMSL-PAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSE- 410 (463)
Q Consensus 333 ~p~i~~rlv~lL~l-~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~~- 410 (463)
..+..++.+|.. ++..++..++-+|.+++..+......+.. .+.|..|+.+|..+ ++++-++|+.+|.+|+..
T Consensus 124 --g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~-~ggi~~L~~lL~~~--d~~v~~~A~~aLs~L~~~~ 198 (296)
T 1xqr_A 124 --GALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLR-LDGFSVLMRAMQQQ--VQKLKVKSAFLLQNLLVGH 198 (296)
T ss_dssp --THHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHHC
T ss_pred --CCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHH-CCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHhCC
Confidence 156677777764 57889999999999999877665555544 46899999999875 788899999999999876
Q ss_pred CCcchhHHhhH--HHHHH-HHhccchhHHHHHHHHHHHhcC
Q 012466 411 PQNRVLLLAYE--NAFAE-ILFSDGRYSDTFARILYELTSR 448 (463)
Q Consensus 411 p~n~~~ll~~E--~~l~~-i~~sD~~~~~~~~~iL~~l~~~ 448 (463)
|+++..++... +.|.. +.-.|+.+-....+.|..|...
T Consensus 199 ~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 199 PEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp GGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence 66777775422 23333 3334889999999999988876
No 36
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=97.71 E-value=0.00075 Score=75.16 Aligned_cols=194 Identities=14% Similarity=0.178 Sum_probs=129.3
Q ss_pred hHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChH---HHHHHHH
Q 012466 238 HCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKA---WHCAAAE 314 (463)
Q Consensus 238 ~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~---~~l~aLE 314 (463)
.++..|..++.. .....|+.+.-++.||+..-.-+ . .+- +.-.+..|..+|.+.... ....|..
T Consensus 457 GvIp~Lv~Ll~S---~s~~~re~A~~aL~nLS~d~~~R--------~-~lv-qqGal~~LL~lL~s~~~~~~~~k~~AA~ 523 (778)
T 3opb_A 457 ELISFLKREMHN---LSPNCKQQVVRIIYNITRSKNFI--------P-QLA-QQGAVKIILEYLANKQDIGEPIRILGCR 523 (778)
T ss_dssp THHHHHHHHGGG---SCHHHHHHHHHHHHHHHTSGGGH--------H-HHH-HTTHHHHHHHHTTCC---CCHHHHHHHH
T ss_pred cCHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHH--------H-HHH-HCCCHHHHHHHHhcCCCcchHHHHHHHH
Confidence 455666655544 34579999999999999552211 1 121 234678888888765432 5678999
Q ss_pred HHHhhcCCCCCccccCCCch-HHHHHHHHhcCC-cHHH------------H-HHHHHHHHHHhhccC----HHHHHHhhc
Q 012466 315 LLGRLIINPDNEPFLLPFVP-QIHKRLVDLMSL-PAFD------------A-QAAAVGALYNLAEVN----VDCRLKLAS 375 (463)
Q Consensus 315 ~L~rLs~~~~Ne~~ll~~~p-~i~~rlv~lL~l-~D~~------------L-l~aaLe~LY~Lt~l~----~~~~~~ia~ 375 (463)
+|+||++..+++..+-.+.+ ..+..++++|.. ++.. + .--+|-+|++|+... ++.+.+|..
T Consensus 524 ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~ 603 (778)
T 3opb_A 524 ALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVS 603 (778)
T ss_dssp HHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHH
Confidence 99999987776655433222 488999999983 2211 2 456888999999996 467888888
Q ss_pred chhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCcch-hHHhhH--H---HHHH-HHh---ccchhHHHHHHHHHHH
Q 012466 376 ERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRV-LLLAYE--N---AFAE-ILF---SDGRYSDTFARILYEL 445 (463)
Q Consensus 376 ~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~~p~n~~-~ll~~E--~---~l~~-i~~---sD~~~~~~~~~iL~~l 445 (463)
+.+.+..|+.++.++ +..+-|.|+..+.||+.+|+.+. .|.-.| . +|-. +++ .|.++....+-+|--|
T Consensus 604 ~~ga~~~L~~LL~s~--n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnL 681 (778)
T 3opb_A 604 TKVYWSTIENLMLDE--NVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANI 681 (778)
T ss_dssp SHHHHHHHHHGGGCS--SHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHhCC--CHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 778999999999876 44455667799999999999873 554344 1 1222 223 2556665555555555
Q ss_pred h
Q 012466 446 T 446 (463)
Q Consensus 446 ~ 446 (463)
+
T Consensus 682 t 682 (778)
T 3opb_A 682 A 682 (778)
T ss_dssp H
T ss_pred c
Confidence 3
No 37
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=97.68 E-value=0.00017 Score=69.41 Aligned_cols=117 Identities=18% Similarity=0.214 Sum_probs=95.7
Q ss_pred HHHHHHHhcCCcHH--HHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhc-CCC
Q 012466 336 IHKRLVDLMSLPAF--DAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVS-EPQ 412 (463)
Q Consensus 336 i~~rlv~lL~l~D~--~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~-~p~ 412 (463)
.++.+|++|..+|. +++..+..+|.+|+..+.+.+..|+.. |.|..||.+|.++ ++++-+.||.+|.+|+. +++
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~-G~Ip~LV~lL~s~--~~~vq~~Aa~aL~nLa~~~~~ 85 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQL-RGILKLLQLLKVQ--NEDVQRAVCGALRNLVFEDND 85 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHT-THHHHHHHGGGCC--CHHHHHHHHHHHHHHHTTCHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHc-CCHHHHHHHHcCC--CHHHHHHHHHHHHHHHhCCHH
Confidence 47789999999888 888888899999999888887777654 7899999999876 78899999999999998 699
Q ss_pred cchhHHhhHH--HHHHHHh--ccchhHHHHHHHHHHHhcCCCccccc
Q 012466 413 NRVLLLAYEN--AFAEILF--SDGRYSDTFARILYELTSRPNNKVAS 455 (463)
Q Consensus 413 n~~~ll~~E~--~l~~i~~--sD~~~~~~~~~iL~~l~~~~~~~~~~ 455 (463)
||..+...-- .|..+.- .|..+....+..||.|++...+|..-
T Consensus 86 nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i 132 (233)
T 3tt9_A 86 NKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLM 132 (233)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHH
T ss_pred HHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHH
Confidence 9998865432 2333322 37888899999999999999988643
No 38
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=97.66 E-value=0.00013 Score=81.77 Aligned_cols=184 Identities=13% Similarity=0.040 Sum_probs=137.9
Q ss_pred hhhhhhhcCCCCC-CcHHHHhhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHH
Q 012466 215 GASNIIRNFSFMP-DNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRA 293 (463)
Q Consensus 215 eas~ILRNLSf~~-~N~~~LA~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~l 293 (463)
++...|+||+..+ +|...+.+. ..+.-|..++.... ..+++.++.++.||+..-+... .. + .+...
T Consensus 600 eAl~AL~NLa~~~d~~~~~Ii~a-G~l~~Lv~LL~s~~---~~Vq~~A~~~L~NLa~~~~~~~------~~--v-~~~g~ 666 (810)
T 3now_A 600 ESLMALTNLASMNESVRQRIIKE-QGVSKIEYYLMEDH---LYLTRAAAQCLCNLVMSEDVIK------MF--E-GNNDR 666 (810)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHT-THHHHHHHHHHSCC---TTHHHHHHHHHHHHTTSHHHHH------HH--H-SSSSH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHc-CCHHHHHHHHcCCC---HHHHHHHHHHHHHHhCChHHHH------HH--H-hccCc
Confidence 5678899999884 677777774 45566655555432 3599999999999996533210 00 1 01236
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHhhcC-CCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHH
Q 012466 294 VEAIMGILGSPFKAWHCAAAELLGRLII-NPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLK 372 (463)
Q Consensus 294 l~tL~~~L~S~Dr~~~l~aLE~L~rLs~-~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ 372 (463)
++.|..++.++|......|.-+|+.|+. ++.+...+... ...+..++++|...|.+++..++.+|++++..+.+.+..
T Consensus 667 l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~-~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~ 745 (810)
T 3now_A 667 VKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAI-ASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKK 745 (810)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTS-TTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHH-cCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 7888999999999999999999999998 44443333322 247789999999999999999999999999987777666
Q ss_pred hhcchhHHHHHHHhhcCCC-CChHHHHHHHHHHHHhhcCCCc
Q 012466 373 LASERWAIDRLLRVIKTPH-PVPEVCRKAAMILESLVSEPQN 413 (463)
Q Consensus 373 ia~~~~~V~~LV~Ll~~~~-~~~em~rrAA~~L~~l~~~p~n 413 (463)
+... +.|..|+.+++... .+.++...|..+|.++.+...=
T Consensus 746 l~e~-G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~~ 786 (810)
T 3now_A 746 LFET-DIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRII 786 (810)
T ss_dssp HHTS-THHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHC-CCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCCc
Confidence 6654 89999999997653 4788999999999998876543
No 39
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=97.29 E-value=0.014 Score=52.82 Aligned_cols=160 Identities=20% Similarity=0.178 Sum_probs=112.3
Q ss_pred hhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHHHH
Q 012466 237 RHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELL 316 (463)
Q Consensus 237 ~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~L 316 (463)
+..+..|+.++.. .+.++|..++..|+++.. ...+..|...|.++|..+...|+++|
T Consensus 49 ~~~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~--------------------~~~~~~L~~~l~~~~~~vr~~a~~aL 105 (211)
T 3ltm_A 49 ERAVEPLIKALKD---EDAWVRRAAADALGQIGD--------------------ERAVEPLIKALKDEDGWVRQSAAVAL 105 (211)
T ss_dssp GGGHHHHHHHTTC---SCHHHHHHHHHHHHHHCC--------------------GGGHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred ccHHHHHHHHHcC---CCHHHHHHHHHHHHhhCC--------------------HHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 5667777777764 356899999999999872 11456777888999999999999999
Q ss_pred HhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhcCCCCChHH
Q 012466 317 GRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEV 396 (463)
Q Consensus 317 ~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~~~~~~~em 396 (463)
+++.. +..+..++.+|.-+|..++..++..|..+. .+..+..|+.++.+. ++++
T Consensus 106 ~~~~~------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~------------~~~~~~~L~~~l~d~--~~~v 159 (211)
T 3ltm_A 106 GQIGD------------ERAVEPLIKALKDEDWFVRIAAAFALGEIG------------DERAVEPLIKALKDE--DGWV 159 (211)
T ss_dssp HHHCC------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC------------CGGGHHHHHHHTTCS--SHHH
T ss_pred HHhCc------------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC------------CHHHHHHHHHHHcCC--CHHH
Confidence 99853 235677888888899999999999998773 245788999998654 6777
Q ss_pred HHHHHHHHHHhhcCCCcchhHHhhHHHHHHHHhccchhHHHHHHHHHHHhcCCCcc
Q 012466 397 CRKAAMILESLVSEPQNRVLLLAYENAFAEILFSDGRYSDTFARILYELTSRPNNK 452 (463)
Q Consensus 397 ~rrAA~~L~~l~~~p~n~~~ll~~E~~l~~i~~sD~~~~~~~~~iL~~l~~~~~~~ 452 (463)
...|+..|..+.. |+-.+ .++..+. =.|+.|-..-.+.|..+...+.++
T Consensus 160 r~~a~~aL~~~~~-~~~~~---~L~~~l~---d~~~~vr~~A~~aL~~~~~~~~~~ 208 (211)
T 3ltm_A 160 RQSAADALGEIGG-ERVRA---AMEKLAE---TGTGFARKVAVNYLETHKSFNHHH 208 (211)
T ss_dssp HHHHHHHHHHHCS-HHHHH---HHHHHHH---HCCHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHhCc-hhHHH---HHHHHHh---CCCHHHHHHHHHHHHhcCCCCCCC
Confidence 8888888888843 22222 1222222 258888888888888888776654
No 40
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=97.11 E-value=0.035 Score=49.75 Aligned_cols=156 Identities=21% Similarity=0.163 Sum_probs=111.2
Q ss_pred hhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHHHH
Q 012466 237 RHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELL 316 (463)
Q Consensus 237 ~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~L 316 (463)
+..+..|+.++.. .+..+|..++..|+.+... ..+..|...|.+++......|+++|
T Consensus 44 ~~~~~~L~~~l~~---~~~~vr~~a~~~L~~~~~~--------------------~~~~~L~~~l~d~~~~vr~~a~~aL 100 (201)
T 3ltj_A 44 ERAVEPLIKALKD---EDAWVRRAAADALGQIGDE--------------------RAVEPLIKALKDEDGWVRQSAAVAL 100 (201)
T ss_dssp GGGHHHHHHHTTC---SSHHHHHHHHHHHHHHCCG--------------------GGHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHcC---CCHHHHHHHHHHHHhhCCH--------------------HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4566777777754 4567999999999998621 1456777888899989999999999
Q ss_pred HhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhcCCCCChHH
Q 012466 317 GRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEV 396 (463)
Q Consensus 317 ~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~~~~~~~em 396 (463)
+++.. +..+..++.+|.-+|..++..++..|..+.. +..+..|+.++.+. ++++
T Consensus 101 ~~~~~------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~d~--~~~v 154 (201)
T 3ltj_A 101 GQIGD------------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD------------ERAVEPLIKALKDE--DGWV 154 (201)
T ss_dssp HHHCC------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC------------GGGHHHHHHHTTCS--SHHH
T ss_pred HHhCc------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC------------HHHHHHHHHHHcCC--CHHH
Confidence 99853 2356778888888999999999999887742 56888999999765 6777
Q ss_pred HHHHHHHHHHhhcCCCcchhHHhhHHHHHHHHhccchhHHHHHHHHHHHhcC
Q 012466 397 CRKAAMILESLVSEPQNRVLLLAYENAFAEILFSDGRYSDTFARILYELTSR 448 (463)
Q Consensus 397 ~rrAA~~L~~l~~~p~n~~~ll~~E~~l~~i~~sD~~~~~~~~~iL~~l~~~ 448 (463)
.+.|+..|..+. .|+-.+ .+...+ .=.|+.|.......|-++.++
T Consensus 155 r~~A~~aL~~~~-~~~~~~---~L~~~l---~d~~~~vr~~A~~aL~~l~~~ 199 (201)
T 3ltj_A 155 RQSAADALGEIG-GERVRA---AMEKLA---ETGTGFARKVAVNYLETHKSL 199 (201)
T ss_dssp HHHHHHHHHHHC-SHHHHH---HHHHHH---HHCCHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHhC-chhHHH---HHHHHH---hCCCHHHHHHHHHHHHHHHhh
Confidence 888888888883 222222 222222 124777777777777766544
No 41
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=97.08 E-value=0.015 Score=52.68 Aligned_cols=127 Identities=19% Similarity=0.149 Sum_probs=99.5
Q ss_pred HhhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHH
Q 012466 233 MAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAA 312 (463)
Q Consensus 233 LA~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~a 312 (463)
+..++..+..|+..+.. .+..+|..++..|+.+.. ...+..|...|.++|......|
T Consensus 14 ~~~~~~~~~~L~~~L~~---~~~~vR~~A~~~L~~~~~--------------------~~~~~~L~~~l~~~~~~vr~~a 70 (211)
T 3ltm_A 14 LRADPEKVEMYIKNLQD---DSYYVRRAAAYALGKIGD--------------------ERAVEPLIKALKDEDAWVRRAA 70 (211)
T ss_dssp --CCGGGHHHHHHHTTC---SSHHHHHHHHHHHHHHCC--------------------GGGHHHHHHHTTCSCHHHHHHH
T ss_pred hhcCHhHHHHHHHHHcC---CCHHHHHHHHHHHHHhCC--------------------ccHHHHHHHHHcCCCHHHHHHH
Confidence 45678888888888874 456899999999999873 1245677788889998899999
Q ss_pred HHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhcCCCC
Q 012466 313 AELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHP 392 (463)
Q Consensus 313 LE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~~~~~ 392 (463)
+++|+++.. +..+..++.+|..+|..++..++..|-.+. .+..+..|+.++++.
T Consensus 71 ~~aL~~~~~------------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~------------~~~~~~~L~~~l~d~-- 124 (211)
T 3ltm_A 71 ADALGQIGD------------ERAVEPLIKALKDEDGWVRQSAAVALGQIG------------DERAVEPLIKALKDE-- 124 (211)
T ss_dssp HHHHHHHCC------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC------------CGGGHHHHHHHTTCS--
T ss_pred HHHHHhhCC------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC------------cHHHHHHHHHHHhCC--
Confidence 999999852 335677888888899999999999887764 256889999998654
Q ss_pred ChHHHHHHHHHHHHhh
Q 012466 393 VPEVCRKAAMILESLV 408 (463)
Q Consensus 393 ~~em~rrAA~~L~~l~ 408 (463)
++++...|+..|-.+.
T Consensus 125 ~~~vr~~a~~aL~~~~ 140 (211)
T 3ltm_A 125 DWFVRIAAAFALGEIG 140 (211)
T ss_dssp SHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcC
Confidence 7778888888888874
No 42
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=96.58 E-value=0.19 Score=44.87 Aligned_cols=124 Identities=19% Similarity=0.141 Sum_probs=93.7
Q ss_pred hhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHHHH
Q 012466 237 RHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELL 316 (463)
Q Consensus 237 ~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~L 316 (463)
+.....++..+... +.++|..++..|+.+.. ...+..|...|.++|......|+++|
T Consensus 13 ~~~~~~~i~~L~~~---~~~vr~~A~~~L~~~~~--------------------~~~~~~L~~~l~~~~~~vr~~a~~~L 69 (201)
T 3ltj_A 13 PEKVEMYIKNLQDD---SYYVRRAAAYALGKIGD--------------------ERAVEPLIKALKDEDAWVRRAAADAL 69 (201)
T ss_dssp HHHHHHHHHHTTCS---CHHHHHHHHHHHHHHCC--------------------GGGHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred CcchHHHHHHhcCC---CHHHHHHHHHHHHhcCC--------------------hhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34445566666553 46799999999998873 12456677888888888899999999
Q ss_pred HhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhcCCCCChHH
Q 012466 317 GRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEV 396 (463)
Q Consensus 317 ~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~~~~~~~em 396 (463)
+++.. +..+..++.+|..+|..++..++..|..+.. +..+..|+.++.+. ++++
T Consensus 70 ~~~~~------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~d~--~~~v 123 (201)
T 3ltj_A 70 GQIGD------------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD------------ERAVEPLIKALKDE--DWFV 123 (201)
T ss_dssp HHHCC------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTTCS--SHHH
T ss_pred HhhCC------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------------HHHHHHHHHHHcCC--CHHH
Confidence 99852 2356777888888999999999999877632 45788899988654 7777
Q ss_pred HHHHHHHHHHhhc
Q 012466 397 CRKAAMILESLVS 409 (463)
Q Consensus 397 ~rrAA~~L~~l~~ 409 (463)
...|+..|-.+..
T Consensus 124 r~~a~~aL~~~~~ 136 (201)
T 3ltj_A 124 RIAAAFALGEIGD 136 (201)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCC
Confidence 7778888877753
No 43
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=96.27 E-value=0.22 Score=48.38 Aligned_cols=183 Identities=14% Similarity=0.170 Sum_probs=120.6
Q ss_pred ChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHHH
Q 012466 236 HRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAEL 315 (463)
Q Consensus 236 ~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~ 315 (463)
.+.-+.+|...+|. .|..++.++|-+++.+-..++=.- + ..+ -+.+|+.+...+.+.|.-..+.|++|
T Consensus 31 ~e~~l~~L~~LL~d---kD~~vk~raL~~LeellK~~~~~l------~-~~~--~e~~Ld~iI~llk~~dEkval~A~r~ 98 (265)
T 3b2a_A 31 DKRALFLILELAGE---DDETTRLRAFVALGEILKRADSDL------R-MMV--LERHLDVFINALSQENEKVTIKALRA 98 (265)
T ss_dssp CHHHHHHHHHHTTS---SCHHHHHHHHHHHHHHHHHSCHHH------H-HHH--HHHHHHHHHHTCCSTTHHHHHHHHHH
T ss_pred chhHHHHHHHHHhc---cchHHHHHHHHHHHHHHHhccccc------c-HHH--HHHHHHHHHHHHhccchhHHHHHHHH
Confidence 45556666666665 456799999999999987753110 0 012 36789999999999999999999999
Q ss_pred HHhhcCCCCCccccCCCchH----HHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhhc-chhHHHHHHHhhcCC
Q 012466 316 LGRLIINPDNEPFLLPFVPQ----IHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLAS-ERWAIDRLLRVIKTP 390 (463)
Q Consensus 316 L~rLs~~~~Ne~~ll~~~p~----i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~-~~~~V~~LV~Ll~~~ 390 (463)
|+.|-.+.. ..|. +...+.+++.-++..+++++.|.|=-+ +++. .++.++.|++|+++-
T Consensus 99 L~~LLe~vp-------L~~~~y~Kl~~aL~dlik~~~~il~~eaae~Lgkl---------kv~~~~~~V~~~l~sLl~Sk 162 (265)
T 3b2a_A 99 LGYLVKDVP-------MGSKTFLKAAKTLVSLLESPDDMMRIETIDVLSKL---------QPLEDSKLVRTYINELVVSP 162 (265)
T ss_dssp HHHHHTTCC-------BCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHC---------CBSCCCHHHHHHHHHHHTCS
T ss_pred HHHHHcCCC-------CCHHHHHHHHHHHHHHhcCCCchHHHHHHHHhCcC---------CcccchHHHHHHHHHHHhCC
Confidence 999965543 3344 555667777788999999999998776 4443 788899999999444
Q ss_pred CCChHHHHHHH-HHHHHhhcCCCcchhHHhhHHHHHHHHhc-cchhHHHHHHHHHHHhcCC
Q 012466 391 HPVPEVCRKAA-MILESLVSEPQNRVLLLAYENAFAEILFS-DGRYSDTFARILYELTSRP 449 (463)
Q Consensus 391 ~~~~em~rrAA-~~L~~l~~~p~n~~~ll~~E~~l~~i~~s-D~~~~~~~~~iL~~l~~~~ 449 (463)
+.+ .+-|| ..|.+++.-.+++..+-..=..+-++-=+ |+.+.+.-=.+|.++.++|
T Consensus 163 --d~~-vK~agl~~L~eia~~S~D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 163 --DLY-TKVAGFCLFLNMLNSSADSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp --SHH-HHHHHHHHHHHHGGGCSSCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred --Chh-HHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 443 22222 33556666555554443333333332222 5555555555555555543
No 44
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=96.23 E-value=0.074 Score=58.61 Aligned_cols=198 Identities=13% Similarity=0.122 Sum_probs=136.6
Q ss_pred HHHhhhhhhhhhhcCCCCCCcHHHHhhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccc
Q 012466 209 KQQCAVGASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKIT 288 (463)
Q Consensus 209 ~qr~a~eas~ILRNLSf~~~N~~~LA~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~ 288 (463)
+...+.+++.|.+.- + ..+-|.++..|+.++... +...|+.++.++..|.....-.. .+.... ..
T Consensus 107 r~~~a~~i~~ia~~~-~-------~~~wp~ll~~L~~~l~~~---~~~~r~~al~~L~~i~~~~~~~~-~~~~~~--~~- 171 (852)
T 4fdd_A 107 RATVGILITTIASKG-E-------LQNWPDLLPKLCSLLDSE---DYNTCEGAFGALQKICEDSAEIL-DSDVLD--RP- 171 (852)
T ss_dssp HHHHHHHHHHHHHHT-T-------TTTCTTHHHHHHHHHSCS---SHHHHHHHHHHHHHHHHHHTTHH-HHCSSS--SC-
T ss_pred HHHHHHHHHHHHHhc-C-------ccccHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHHHHhHHHh-chhhhc--ch-
Confidence 444455566676653 1 134688999998888764 35689999998888875542110 000000 00
Q ss_pred hhHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHH
Q 012466 289 REKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVD 368 (463)
Q Consensus 289 ~~~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~ 368 (463)
-..++..+..++.+++-.....|+++|+.+..... ..+.+.++.+++.++.++.-+|.+++..++++|..++....+
T Consensus 172 -~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~--~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~ 248 (852)
T 4fdd_A 172 -LNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRT--QALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMD 248 (852)
T ss_dssp -HHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTC--HHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHH
T ss_pred -HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHH
Confidence 13467777788888888889999999998875433 334456677888888988889999999999999999987654
Q ss_pred HHHHhhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCcchhHHhhHHHHHHHH
Q 012466 369 CRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLLAYENAFAEIL 428 (463)
Q Consensus 369 ~~~~ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~~p~n~~~ll~~E~~l~~i~ 428 (463)
.-. .+-+..+..++.++.+ +..++...|...+.++++++..+..+.||-..+..+.
T Consensus 249 ~~~--~~l~~l~~~l~~~~~~--~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~l 304 (852)
T 4fdd_A 249 RLL--PHMHNIVEYMLQRTQD--QDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVL 304 (852)
T ss_dssp HHG--GGHHHHHHHHHHHHTC--SSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHH
T ss_pred HHH--HHHHHHHHHHHHHccC--CcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence 321 2334566777777664 3667788888899999998877776777776666543
No 45
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=96.21 E-value=0.0086 Score=65.42 Aligned_cols=196 Identities=19% Similarity=0.218 Sum_probs=134.1
Q ss_pred hhhhhhcCCCCCCcHHHHhhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCcccccc---CC--Ccccccccc--
Q 012466 216 ASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIF---SS--SKQSYIKIT-- 288 (463)
Q Consensus 216 as~ILRNLSf~~~N~~~LA~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~---~~--s~~~~l~i~-- 288 (463)
|.+=||.+|= .--...+ ..-++.|+..+.... +|.|+.+.+||||-|+-..-+-..- +. +....+.++
T Consensus 42 Av~~Lk~~sk--~y~~~Vg--~~~l~~li~~L~~d~-~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~ 116 (651)
T 3grl_A 42 AVRALKSLSK--KYRLEVG--IQAMEHLIHVLQTDR-SDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEI 116 (651)
T ss_dssp HHHHHHHTTT--TTTTHHH--HHTHHHHHHHHHSCT-TCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHH
T ss_pred HHHHHHHHHH--HhHHHhh--hhhHHHHHHHHhccc-ccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHH
Confidence 5666888863 2222222 223445555555443 7889999999999987543221100 00 000001111
Q ss_pred --hhHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCC--ccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhc
Q 012466 289 --REKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDN--EPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAE 364 (463)
Q Consensus 289 --~~~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~N--e~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~ 364 (463)
.....+.+|..+|.++|-.....++.+|..|+.+..+ ...|+. .|.-+.++|.+|.-+.+.++.-++-+|.+||.
T Consensus 117 f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~-~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~ 195 (651)
T 3grl_A 117 FIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILV-SPMGVSRLMDLLADSREVIRNDGVLLLQALTR 195 (651)
T ss_dssp HHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHH-STTHHHHHHGGGGCSSHHHHHHHHHHHHHHHT
T ss_pred HHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHh-CcccHHHHHHHHhCchHHHHHHHHHHHHHHhc
Confidence 1233578889999999988999999999999988654 233332 23468899999999889999999999999999
Q ss_pred cCHHHHHHhhcchhHHHHHHHhhcCCCC--ChHHHHHHHHHHHHhhcC-CCcchhHH
Q 012466 365 VNVDCRLKLASERWAIDRLLRVIKTPHP--VPEVCRKAAMILESLVSE-PQNRVLLL 418 (463)
Q Consensus 365 l~~~~~~~ia~~~~~V~~LV~Ll~~~~~--~~em~rrAA~~L~~l~~~-p~n~~~ll 418 (463)
-+.+. .+|..-.++++.|+.++..+.+ -..+...+...|.+|.+. |.|..+|.
T Consensus 196 ~n~~i-QklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~Fr 251 (651)
T 3grl_A 196 SNGAI-QKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFK 251 (651)
T ss_dssp TCHHH-HHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHH-HHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHH
Confidence 99876 7788888999999999976533 234778899999999885 34666663
No 46
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=95.68 E-value=0.33 Score=53.38 Aligned_cols=194 Identities=13% Similarity=0.142 Sum_probs=126.5
Q ss_pred hhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCC-ccccccCCCcccccccch--hHHHHHHHHHhhCCCChHHHH
Q 012466 234 AQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPL-LDLRIFSSSKQSYIKITR--EKRAVEAIMGILGSPFKAWHC 310 (463)
Q Consensus 234 A~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~-l~L~~~~~s~~~~l~i~~--~~~ll~tL~~~L~S~Dr~~~l 310 (463)
.++|.+..+++.++....+.+.++|+.+.-.|.|.-.. +. .++. ...+-..|...|.+++.....
T Consensus 41 ~~~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~------------~~~~~~~~~ik~~ll~~l~~~~~~vr~ 108 (852)
T 4fdd_A 41 NQYPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQ------------NFPNGVTDFIKSECLNNIGDSSPLIRA 108 (852)
T ss_dssp TTSHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGG------------GCCHHHHHHHHHHHHTTTTCSSHHHHH
T ss_pred HhCCCHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccC------------CCCHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 45788777777777643345678999999999987643 21 1211 122455667778888888888
Q ss_pred HHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHH--h-hcchhHHHHHHHhh
Q 012466 311 AAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLK--L-ASERWAIDRLLRVI 387 (463)
Q Consensus 311 ~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~--i-a~~~~~V~~LV~Ll 387 (463)
.+.++++.++..+.. ..+|.++..+++.+.-+|...++.++.+|+.+.+-....... + ......+..|+.++
T Consensus 109 ~~a~~i~~ia~~~~~-----~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l 183 (852)
T 4fdd_A 109 TVGILITTIASKGEL-----QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFF 183 (852)
T ss_dssp HHHHHHHHHHHHTTT-----TTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHhcCc-----cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHh
Confidence 889999999887632 468889999999999999999999999999988642111110 0 01244566677766
Q ss_pred cCCCCChHHHHHHHHHHHHhhcCCCcchhHHhhHH----HHHHHHh-ccchhHHHHHHHHHHHhcC
Q 012466 388 KTPHPVPEVCRKAAMILESLVSEPQNRVLLLAYEN----AFAEILF-SDGRYSDTFARILYELTSR 448 (463)
Q Consensus 388 ~~~~~~~em~rrAA~~L~~l~~~p~n~~~ll~~E~----~l~~i~~-sD~~~~~~~~~iL~~l~~~ 448 (463)
. ++++++...|+..|.++.+... ..+.++-. .+....- .|+.+.....++|.++...
T Consensus 184 ~--~~~~~vR~~A~~aL~~~~~~~~--~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~ 245 (852)
T 4fdd_A 184 K--HSSPKIRSHAVACVNQFIISRT--QALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEV 245 (852)
T ss_dssp T--CSSHHHHHHHHHHHHTTTTTTC--HHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred c--CCCHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Confidence 6 4477777777788877775422 22222222 2222222 2666777777777766553
No 47
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=95.59 E-value=0.12 Score=56.47 Aligned_cols=155 Identities=19% Similarity=0.238 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCC--CChHHHHHHHHHHHhhcCCCCCccc--c--
Q 012466 256 ELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGS--PFKAWHCAAAELLGRLIINPDNEPF--L-- 329 (463)
Q Consensus 256 eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S--~Dr~~~l~aLE~L~rLs~~~~Ne~~--l-- 329 (463)
|=|..|+--|..++...... + +...+..|...|.. .|...+..+||+|..+-..++.++. .
T Consensus 37 eDRR~Av~~Lk~~sk~y~~~-----------V--g~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~ 103 (651)
T 3grl_A 37 DDRRNAVRALKSLSKKYRLE-----------V--GIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENST 103 (651)
T ss_dssp HHHHHHHHHHHHTTTTTTTH-----------H--HHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC----------
T ss_pred hHHHHHHHHHHHHHHHhHHH-----------h--hhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCccccccccc
Confidence 44777777777777543322 1 23456667776643 5778899999999776554433210 0
Q ss_pred --CC-----Cc------hHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHH-HHHHhhcchhHHHHHHHhhcCCCCChH
Q 012466 330 --LP-----FV------PQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVD-CRLKLASERWAIDRLLRVIKTPHPVPE 395 (463)
Q Consensus 330 --l~-----~~------p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~-~~~~ia~~~~~V~~LV~Ll~~~~~~~e 395 (463)
.. +. +.-+.-++++|..+|...+.+++.+|-.|...... .-..|...+..|.+||.+|++.+ |
T Consensus 104 ~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~r---E 180 (651)
T 3grl_A 104 RQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSR---E 180 (651)
T ss_dssp ----CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSS---H
T ss_pred ccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCch---H
Confidence 00 00 12466789999999999999999999999998765 77778889999999999999873 5
Q ss_pred HH-HHHHHHHHHhhcCCCcchhHHhhHHHHHH
Q 012466 396 VC-RKAAMILESLVSEPQNRVLLLAYENAFAE 426 (463)
Q Consensus 396 m~-rrAA~~L~~l~~~p~n~~~ll~~E~~l~~ 426 (463)
+. -.|...|.+|++.-.+.+-++.||+.+-.
T Consensus 181 ~iRneallLL~~Lt~~n~~iQklVAFEnaFe~ 212 (651)
T 3grl_A 181 VIRNDGVLLLQALTRSNGAIQKIVAFENAFER 212 (651)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHhccHHH
Confidence 44 45778889999999999999999976654
No 48
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=95.57 E-value=0.21 Score=47.05 Aligned_cols=118 Identities=14% Similarity=-0.012 Sum_probs=78.2
Q ss_pred ChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCC
Q 012466 253 EDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPF 332 (463)
Q Consensus 253 ~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~ 332 (463)
.+.++|..+...|+++.....- ....++..|...+.+++..+...|+++|+++...
T Consensus 103 ~~~~vr~~a~~aL~~l~~~~~~--------------~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~~---------- 158 (280)
T 1oyz_A 103 KSACVRATAIESTAQRCKKNPI--------------YSPKIVEQSQITAFDKSTNVRRATAFAISVINDK---------- 158 (280)
T ss_dssp SCHHHHHHHHHHHHHHHHHCGG--------------GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------------
T ss_pred CCHHHHHHHHHHHHHHhccCCc--------------ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCCH----------
Confidence 3467888888888887632100 0234667778888888888888888998887531
Q ss_pred chHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhh
Q 012466 333 VPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLV 408 (463)
Q Consensus 333 ~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~ 408 (463)
..+..++.+|..+|..++..++..|-++.. ..+..+..|+.++.+. ++++.+.|+..|..+.
T Consensus 159 --~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~~~L~~~l~d~--~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 159 --ATIPLLINLLKDPNGDVRNWAAFAININKY----------DNSDIRDCFVEMLQDK--NEEVRIEAIIGLSYRK 220 (280)
T ss_dssp --CCHHHHHHHHTCSSHHHHHHHHHHHHHHTC----------CCHHHHHHHHHHTTCS--CHHHHHHHHHHHHHTT
T ss_pred --HHHHHHHHHHcCCCHHHHHHHHHHHHhhcc----------CcHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhC
Confidence 134456666777788888888887766532 1245667777777654 5666677777777665
No 49
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=95.43 E-value=0.27 Score=45.65 Aligned_cols=154 Identities=16% Similarity=0.142 Sum_probs=108.5
Q ss_pred ChhHHHHHHHhhh-ccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHH
Q 012466 236 HRHCLETVFQCIE-DHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAE 314 (463)
Q Consensus 236 ~~~ll~lLl~~l~-~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE 314 (463)
...++..|..++. + .+..+++.++.+++.++..+.=. | . . .-..++..|...+..........|.+
T Consensus 54 ~~~i~~~L~~~l~kd---~~~~V~~~a~~~l~~la~~l~~~-~--~--~-----~~~~ilp~ll~~l~d~~~~vr~~a~~ 120 (242)
T 2qk2_A 54 YGALVSALKKVITKD---SNVVLVAMAGKCLALLAKGLAKR-F--S--N-----YASACVPSLLEKFKEKKPNVVTALRE 120 (242)
T ss_dssp CHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHHHHHGGG-G--H--H-----HHHHHHHHHHHGGGCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC---CCHHHHHHHHHHHHHHHHHHhhh-H--H--H-----HHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3456666666664 4 35679999999999999653211 1 0 0 02447888888888877777788888
Q ss_pred HHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHh-hccCHHHHHHhhcchhHHHHHHHhhcCCCCC
Q 012466 315 LLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNL-AEVNVDCRLKLASERWAIDRLLRVIKTPHPV 393 (463)
Q Consensus 315 ~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~L-t~l~~~~~~~ia~~~~~V~~LV~Ll~~~~~~ 393 (463)
+|..++.+.. ++.+++.+...|...+..++..++.+|..+ ...+... ......+..+..|+.++++. +
T Consensus 121 aL~~~~~~~~--------~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~-~~~~~l~~l~p~l~~~l~D~--~ 189 (242)
T 2qk2_A 121 AIDAIYASTS--------LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTA-LNKKLLKLLTTSLVKTLNEP--D 189 (242)
T ss_dssp HHHHHHTTSC--------HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGG-CCHHHHHHHHHHHHHHHTSS--C
T ss_pred HHHHHHHcCC--------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCC-ccHHHHHHHHHHHHHHhcCC--C
Confidence 8888876421 456888999999988899999999999995 4444321 11223467888899888765 6
Q ss_pred hHHHHHHHHHHHHhhcCCCc
Q 012466 394 PEVCRKAAMILESLVSEPQN 413 (463)
Q Consensus 394 ~em~rrAA~~L~~l~~~p~n 413 (463)
+++...|..++..|++.=-+
T Consensus 190 ~~VR~~A~~~l~~l~~~vg~ 209 (242)
T 2qk2_A 190 PTVRDSSAEALGTLIKLMGD 209 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHCH
T ss_pred hHHHHHHHHHHHHHHHHcCH
Confidence 77788888888888765544
No 50
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=94.83 E-value=1.6 Score=40.71 Aligned_cols=119 Identities=15% Similarity=0.068 Sum_probs=57.9
Q ss_pred CCCChHHHHHHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHH
Q 012466 302 GSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAID 381 (463)
Q Consensus 302 ~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~ 381 (463)
.+++..+...++++|++++.... ...+.++..++.+|..+|..++..++.+|..+.. +..+.
T Consensus 101 ~d~~~~vr~~a~~aL~~l~~~~~------~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~------------~~~~~ 162 (280)
T 1oyz_A 101 NDKSACVRATAIESTAQRCKKNP------IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND------------KATIP 162 (280)
T ss_dssp HCSCHHHHHHHHHHHHHHHHHCG------GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC---------------CCHH
T ss_pred cCCCHHHHHHHHHHHHHHhccCC------cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC------------HHHHH
Confidence 34444444445555555442221 1123345555555555555555555555544321 23667
Q ss_pred HHHHhhcCCCCChHHHHHHHHHHHHhhcCCCcchhHHhhHHHHHHHH-hccchhHHHHHHHHHHHh
Q 012466 382 RLLRVIKTPHPVPEVCRKAAMILESLVSEPQNRVLLLAYENAFAEIL-FSDGRYSDTFARILYELT 446 (463)
Q Consensus 382 ~LV~Ll~~~~~~~em~rrAA~~L~~l~~~p~n~~~ll~~E~~l~~i~-~sD~~~~~~~~~iL~~l~ 446 (463)
.|+.++.+. ++++...|+..|..+... +.. .+ ..|.... =.|+.|....++.|..+.
T Consensus 163 ~L~~~l~d~--~~~vr~~a~~aL~~~~~~--~~~-~~---~~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 163 LLINLLKDP--NGDVRNWAAFAININKYD--NSD-IR---DCFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp HHHHHHTCS--SHHHHHHHHHHHHHHTCC--CHH-HH---HHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCC--CHHHHHHHHHHHHhhccC--cHH-HH---HHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 777777644 566667777777766321 111 11 1122211 135666666666776654
No 51
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=94.74 E-value=0.89 Score=43.19 Aligned_cols=166 Identities=10% Similarity=-0.013 Sum_probs=110.2
Q ss_pred ChhHHHHHHHhh-hccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHH
Q 012466 236 HRHCLETVFQCI-EDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAE 314 (463)
Q Consensus 236 ~~~ll~lLl~~l-~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE 314 (463)
...+++.|..++ .+ .+..++..++.+++.||..+....|... + ...++..|...+......+.-.+.+
T Consensus 58 ~~~~~~~L~~~l~~D---~n~~v~~~A~~al~~la~~l~~~~f~~~---y-----~~~llp~ll~~l~dkk~~V~~aa~~ 126 (249)
T 2qk1_A 58 YSNLLGIYGHIIQKD---ANIQAVALAAQSVELICDKLKTPGFSKD---Y-----VSLVFTPLLDRTKEKKPSVIEAIRK 126 (249)
T ss_dssp CHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHHHHHCTTTSCHH---H-----HHHHHHHHHHGGGCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC---CCHHHHHHHHHHHHHHHHhcccccccHH---H-----HHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 356777777777 34 3456899999999999955431122100 1 2346777778776655555555555
Q ss_pred HHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHH-HHHhhcc-hhHHHHHHHhhcCCCC
Q 012466 315 LLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDC-RLKLASE-RWAIDRLLRVIKTPHP 392 (463)
Q Consensus 315 ~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~-~~~ia~~-~~~V~~LV~Ll~~~~~ 392 (463)
++..++..- |.....++++.++++++..|..+...+++.++.+|..+..-.... ..-.... +..|..|+.++.+.
T Consensus 127 al~~i~~~~-~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~-- 203 (249)
T 2qk1_A 127 ALLTICKYY-DPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDT-- 203 (249)
T ss_dssp HHHHHHHHS-CTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCS--
T ss_pred HHHHHHHHc-cccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCC--
Confidence 666665532 221222337789999999999988899999999999988753210 1112345 78899999999666
Q ss_pred ChHHHHHHHHHHHHhhcCCCcch
Q 012466 393 VPEVCRKAAMILESLVSEPQNRV 415 (463)
Q Consensus 393 ~~em~rrAA~~L~~l~~~p~n~~ 415 (463)
++++...|..+|..+.+.=-|+.
T Consensus 204 ~~~VR~aA~~~l~~i~~~vG~~~ 226 (249)
T 2qk1_A 204 QPAIRTIGFESFAILIKIFGMNT 226 (249)
T ss_dssp SHHHHHHHHHHHHHHHHHHCSGG
T ss_pred CHHHHHHHHHHHHHHHHHhCHHH
Confidence 77777778888888776655543
No 52
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=94.15 E-value=1.6 Score=46.25 Aligned_cols=184 Identities=14% Similarity=0.134 Sum_probs=120.2
Q ss_pred HHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHHHHHhh
Q 012466 240 LETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELLGRL 319 (463)
Q Consensus 240 l~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~L~rL 319 (463)
..-+..++.+ .+..+|+.|...+.+|...- + + .+. ...++..|..+|.++|..+...|+.+|+.+
T Consensus 123 ~~~l~~~L~d---~~~~VRk~A~~al~~i~~~~-----p-~-----~~~-~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i 187 (591)
T 2vgl_B 123 CEPLRKCLKD---EDPYVRKTAAVCVAKLHDIN-----A-Q-----MVE-DQGFLDSLRDLIADSNPMVVANAVAALSEI 187 (591)
T ss_dssp HHHHHHHSSC---SCHHHHHHHHHHHHHHHHSS-----C-C-----CHH-HHHHHHHHHHTTSCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC---CChHHHHHHHHHHHHHHhhC-----h-h-----hcc-cccHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence 3345556653 45679999999999998521 0 1 011 235788899999999999999999999999
Q ss_pred cCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhcCCCCChHHHHH
Q 012466 320 IINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRK 399 (463)
Q Consensus 320 s~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~~~~~~~em~rr 399 (463)
+...... ......+..+.+++..|.-.|.-.+...|++|-.|...+.... +..++.|..++. |.++.+..-
T Consensus 188 ~~~~~~~-~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~------~~~l~~l~~~l~--~~~~~V~~e 258 (591)
T 2vgl_B 188 SESHPNS-NLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREA------QSICERVTPRLS--HANSAVVLS 258 (591)
T ss_dssp TTSCCSC-CSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHH------HHHHHHHTTCSC--SSTTHHHHH
T ss_pred HhhCCCc-cchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHH------HHHHHHHHHHHc--CCChHHHHH
Confidence 8876532 1445566778888888777778888899998887775544321 345566665554 447778888
Q ss_pred HHHHHHHhhcCC-CcchhHH----hhHHHHHHHHhccchhHHHHHHHHHHHhc
Q 012466 400 AAMILESLVSEP-QNRVLLL----AYENAFAEILFSDGRYSDTFARILYELTS 447 (463)
Q Consensus 400 AA~~L~~l~~~p-~n~~~ll----~~E~~l~~i~~sD~~~~~~~~~iL~~l~~ 447 (463)
|+.++..+...- .+...+- ..=..|..+.-+|+.+.-..-+.|..+..
T Consensus 259 a~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~~d~~vr~~aL~~l~~i~~ 311 (591)
T 2vgl_B 259 AVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGEPEVQYVALRNINLIVQ 311 (591)
T ss_dssp HHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence 888998887521 2222221 11122333333577666666666666654
No 53
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=94.13 E-value=0.24 Score=50.86 Aligned_cols=149 Identities=9% Similarity=0.060 Sum_probs=102.4
Q ss_pred hhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHHHH
Q 012466 237 RHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELL 316 (463)
Q Consensus 237 ~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~L 316 (463)
+.++.++..++.+ .+.++|..+.+.++.++..+.-.. . ...++..+..++.+++......|+++|
T Consensus 163 ~~l~~~l~~l~~d---~~~~VR~~a~~~l~~l~~~~~~~~----------~--~~~l~~~l~~~~~d~~~~vr~~a~~~l 227 (588)
T 1b3u_A 163 AELRQYFRNLCSD---DTPMVRRAAASKLGEFAKVLELDN----------V--KSEIIPMFSNLASDEQDSVRLLAVEAC 227 (588)
T ss_dssp HHHHHHHHHHHTC---SCHHHHHHHHHHHHHHHHTSCHHH----------H--HHTHHHHHHHHHTCSCHHHHTTHHHHH
T ss_pred HHHHHHHHHHhCC---CCHHHHHHHHHHHHHHHHHhcHHh----------H--HHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 4556666555543 456899999999999986643210 0 133667777888888877888899999
Q ss_pred HhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhcc-CHHHHHHhhcchhHHHHHHHhhcCCCCChH
Q 012466 317 GRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEV-NVDCRLKLASERWAIDRLLRVIKTPHPVPE 395 (463)
Q Consensus 317 ~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l-~~~~~~~ia~~~~~V~~LV~Ll~~~~~~~e 395 (463)
+.++..-..+. ..+.++..+..++.-++...+.++.++|..+... +.+. ..+..+..|+.++.+. +++
T Consensus 228 ~~l~~~~~~~~----~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~-----~~~~l~~~l~~~l~d~--~~~ 296 (588)
T 1b3u_A 228 VNIAQLLPQED----LEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEI-----TKTDLVPAFQNLMKDC--EAE 296 (588)
T ss_dssp HHHHHHSCHHH----HHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHH-----HHHTHHHHHHHHHTCS--SHH
T ss_pred HHHHHhCCHHH----HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCccc-----chhHHHHHHHHHhCCC--cHH
Confidence 99886543221 1233555566666777788999999999998874 4432 1345788888888765 667
Q ss_pred HHHHHHHHHHHhhcCC
Q 012466 396 VCRKAAMILESLVSEP 411 (463)
Q Consensus 396 m~rrAA~~L~~l~~~p 411 (463)
+.+.|+..|..++..-
T Consensus 297 vr~~a~~~l~~~~~~~ 312 (588)
T 1b3u_A 297 VRAAASHKVKEFCENL 312 (588)
T ss_dssp HHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHh
Confidence 7777888888888753
No 54
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=94.06 E-value=0.52 Score=48.33 Aligned_cols=168 Identities=18% Similarity=0.133 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCCch
Q 012466 255 EELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVP 334 (463)
Q Consensus 255 ~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p 334 (463)
-.+|..+++.++.++..+.-.. + ...++..+..++..++..+...|+++++.++..-.++. ..+
T Consensus 416 ~~vr~~~~~~l~~l~~~~~~~~----------~--~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~----~~~ 479 (588)
T 1b3u_A 416 WRVRLAIIEYMPLLAGQLGVEF----------F--DEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEW----AHA 479 (588)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGG----------C--CHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHH----HHH
T ss_pred chHHHHHHHHHHHHHHHcCHHH----------H--HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchh----HHH
Confidence 3577777777777775432111 1 13467778888888888888999999999987644321 134
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHhhcc-CHHHHHHhhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCc
Q 012466 335 QIHKRLVDLMSLPAFDAQAAAVGALYNLAEV-NVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQN 413 (463)
Q Consensus 335 ~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l-~~~~~~~ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~~p~n 413 (463)
.++..++.++..++...+..+++++..++.. +.. ...+..+..|++++.+. ++++...|+.+|..+.+.=..
T Consensus 480 ~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~-----~~~~~~~~~l~~~l~d~--~~~Vr~~a~~~l~~l~~~~~~ 552 (588)
T 1b3u_A 480 TIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD-----ITTKHMLPTVLRMAGDP--VANVRFNVAKSLQKIGPILDN 552 (588)
T ss_dssp HTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH-----HHHHHTHHHHHHGGGCS--CHHHHHHHHHHHHHHGGGSCH
T ss_pred HHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH-----HHHHHHHHHHHhhCCCC--CchHHHHHHHHHHHHHHHhch
Confidence 4666777777778889999999999988764 221 12356777888887765 677888899999999864322
Q ss_pred chhHHhhHHHHHHHHh-ccchhHHHHHHHHHHH
Q 012466 414 RVLLLAYENAFAEILF-SDGRYSDTFARILYEL 445 (463)
Q Consensus 414 ~~~ll~~E~~l~~i~~-sD~~~~~~~~~iL~~l 445 (463)
...-=.+.+.|..+.- .|+.|-......|-.|
T Consensus 553 ~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 553 STLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 1100012222333211 2666666666655444
No 55
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=94.05 E-value=0.26 Score=47.85 Aligned_cols=111 Identities=15% Similarity=0.115 Sum_probs=82.9
Q ss_pred hHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCCc
Q 012466 254 DEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFV 333 (463)
Q Consensus 254 d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~ 333 (463)
+.-++.|+.|.++.+- -..+ .+.....|.+++.|.|+...-.|+++|..++....+...+.+
T Consensus 128 ~~il~~eaae~Lgklk-v~~~---------------~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~~-- 189 (265)
T 3b2a_A 128 DDMMRIETIDVLSKLQ-PLED---------------SKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLTL-- 189 (265)
T ss_dssp CHHHHHHHHHHHHHCC-BSCC---------------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGGG--
T ss_pred CchHHHHHHHHhCcCC-cccc---------------hHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHHH--
Confidence 3458999999999882 1111 256778888999999999999999999999987766544443
Q ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccC--HHHHHHhhcchhHHHHHH
Q 012466 334 PQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVN--VDCRLKLASERWAIDRLL 384 (463)
Q Consensus 334 p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~--~~~~~~ia~~~~~V~~LV 384 (463)
+++.+-++|..+|..+++.+|+.|-.+...- ++....++..-..|+.|+
T Consensus 190 --I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~ 240 (265)
T 3b2a_A 190 --ILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLV 240 (265)
T ss_dssp --TTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGG
T ss_pred --HHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHH
Confidence 6778889999999999999999999988862 333344444444555554
No 56
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=92.85 E-value=1.8 Score=39.85 Aligned_cols=171 Identities=16% Similarity=0.134 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHhhCCCc-cccccCCCcccccccchhHHHHHHHHHhhC-CCChHHHHHHHHHHHhhcCCCCCccccCCC
Q 012466 255 EELVTNALETIVNLAPLL-DLRIFSSSKQSYIKITREKRAVEAIMGILG-SPFKAWHCAAAELLGRLIINPDNEPFLLPF 332 (463)
Q Consensus 255 ~eLr~~aLDil~nIA~~l-~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~-S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~ 332 (463)
-..|..+++.+..+...- .+. .. . ...++..|...+. .++-.....|+++++.|+..-. +.+.++
T Consensus 29 w~~R~~a~~~L~~l~~~~~~~~---~~--~------~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~--~~~~~~ 95 (242)
T 2qk2_A 29 WTLRKESLEVLEKLLTDHPKLE---NG--E------YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLA--KRFSNY 95 (242)
T ss_dssp HHHHHHHHHHHHHHHHHCSSBC---CC--C------CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHG--GGGHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCC---CC--C------HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHh--hhHHHH
Confidence 457888998888886431 111 01 0 1346788888884 7777778899999999996443 234556
Q ss_pred chHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcC--
Q 012466 333 VPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSE-- 410 (463)
Q Consensus 333 ~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~~-- 410 (463)
++.++..++..+.-++..+++++.++|..+.... ..+..+..|...+.+. ++.+-..+...|..+...
T Consensus 96 ~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~--------~~~~ll~~l~~~l~~~--~~~vr~~~l~~l~~~l~~~~ 165 (242)
T 2qk2_A 96 ASACVPSLLEKFKEKKPNVVTALREAIDAIYAST--------SLEAQQESIVESLSNK--NPSVKSETALFIARALTRTQ 165 (242)
T ss_dssp HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS--------CHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHHcC
Confidence 6678999999999999999999999999887632 2345677788877754 777677777777774433
Q ss_pred CC--cchhHHhhHHHHHHHHh-ccchhHHHHHHHHHHHhcC
Q 012466 411 PQ--NRVLLLAYENAFAEILF-SDGRYSDTFARILYELTSR 448 (463)
Q Consensus 411 p~--n~~~ll~~E~~l~~i~~-sD~~~~~~~~~iL~~l~~~ 448 (463)
|+ ..+++-.+-..|....- ++++|-+.-...|..+..-
T Consensus 166 ~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 166 PTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp GGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 33 22333222233332221 4666667666666665543
No 57
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=92.83 E-value=0.43 Score=54.71 Aligned_cols=155 Identities=13% Similarity=0.112 Sum_probs=106.0
Q ss_pred hHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 012466 238 HCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELLG 317 (463)
Q Consensus 238 ~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~L~ 317 (463)
.++..|+.++. +.+.+.|+.+...+++++..+.- . . -..++..|...+.+++......|..+|+
T Consensus 48 ~il~~Ll~~L~---d~~~~vR~~A~~~L~~l~~~~~~--------~--~---~~~i~~~Ll~~l~d~~~~vR~~a~~~L~ 111 (1230)
T 1u6g_C 48 KVVKMILKLLE---DKNGEVQNLAVKCLGPLVSKVKE--------Y--Q---VETIVDTLCTNMLSDKEQLRDISSIGLK 111 (1230)
T ss_dssp HHHHHHHHHTT---CSSHHHHHHHHHHHHHHHTTSCH--------H--H---HHHHHHHHHHHTTCSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhCCH--------H--H---HHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 55666666665 35678999999999999965321 0 0 1346788888887777777778888998
Q ss_pred hhcCCCCCc----cccCCCchHHHHHHHHhcC-CcHHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhcCCCC
Q 012466 318 RLIINPDNE----PFLLPFVPQIHKRLVDLMS-LPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHP 392 (463)
Q Consensus 318 rLs~~~~Ne----~~ll~~~p~i~~rlv~lL~-l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~~~~~ 392 (463)
.++..-..+ .....+++.++..+++.+. .++...+..++++|..+....... -.-..+..+..|+..+.+.
T Consensus 112 ~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~--l~~~~~~ll~~l~~~L~~~-- 187 (1230)
T 1u6g_C 112 TVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGL--LVNFHPSILTCLLPQLTSP-- 187 (1230)
T ss_dssp HHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSS--CTTTHHHHHHHHGGGGGCS--
T ss_pred HHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhH--HHHHHHHHHHHHHHHHcCC--
Confidence 887654432 1222346678888888887 578899999999999988632110 0113356777777777654
Q ss_pred ChHHHHHHHHHHHHhhcCCC
Q 012466 393 VPEVCRKAAMILESLVSEPQ 412 (463)
Q Consensus 393 ~~em~rrAA~~L~~l~~~p~ 412 (463)
++.+.++|+..|..++..-.
T Consensus 188 ~~~vR~~a~~al~~l~~~~~ 207 (1230)
T 1u6g_C 188 RLAVRKRTIIALGHLVMSCG 207 (1230)
T ss_dssp SHHHHHHHHHHHHHHTTTC-
T ss_pred cHHHHHHHHHHHHHHHHhcC
Confidence 56777888888888887644
No 58
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=92.69 E-value=0.52 Score=50.54 Aligned_cols=160 Identities=17% Similarity=0.180 Sum_probs=102.4
Q ss_pred hHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCCc
Q 012466 254 DEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFV 333 (463)
Q Consensus 254 d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~ 333 (463)
+.++|..+|+.+..|+..- +. + -...+..+..++.++|..+...|+|+|.+++. +.| +
T Consensus 326 d~~vr~~aL~~L~~i~~~~---------p~---~--~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~-~~n-------v 383 (618)
T 1w63_A 326 DKNIRYVALTSLLKTVQTD---------HN---A--VQRHRSTIVDCLKDLDVSIKRRAMELSFALVN-GNN-------I 383 (618)
T ss_dssp STTTHHHHHHHHHHHHHHH---------HH---H--HGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCC-SSS-------T
T ss_pred CCchHHHHHHHHHHHHhhC---------HH---H--HHHHHHHHHHHccCCChhHHHHHHHHHHHHcc-ccc-------H
Confidence 3457888888888777321 00 0 01245678889999999999999999999965 444 3
Q ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhcCCC--CChHHHHHHHHHHHHhhcCC
Q 012466 334 PQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPH--PVPEVCRKAAMILESLVSEP 411 (463)
Q Consensus 334 p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~~~~--~~~em~rrAA~~L~~l~~~p 411 (463)
..+.+.+..++...|.+++..++..|..++.--. ....|.|+.|+.+++.+. -..|+...-.. -+.+.|
T Consensus 384 ~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~------~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~---ii~~~p 454 (618)
T 1w63_A 384 RGMMKELLYFLDSCEPEFKADCASGIFLAAEKYA------PSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQ---LITNSV 454 (618)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSC------CCHHHHHHHHHHHHHHTGGGSCSSHHHHHHH---HHHHSC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhC------ccHHHHHHHHHHHHHhccchhHHHHHHHHHH---HHhcCh
Confidence 4567777778777889999999999999876310 234788999999997662 12222221111 123567
Q ss_pred CcchhHHhhHHHHHHHHh---ccchhHHHHHHHHHHHhc
Q 012466 412 QNRVLLLAYENAFAEILF---SDGRYSDTFARILYELTS 447 (463)
Q Consensus 412 ~n~~~ll~~E~~l~~i~~---sD~~~~~~~~~iL~~l~~ 447 (463)
+-+.+.+.. |...-- .+++....++-||.|++.
T Consensus 455 ~l~~~~v~~---L~~~l~~~~~~~~~~~~~~wilGEy~~ 490 (618)
T 1w63_A 455 EMHAYTVQR---LYKAILGDYSQQPLVQVAAWCIGEYGD 490 (618)
T ss_dssp STHHHHHHH---HHHHHHHCCSCSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHH---HHHHHhcccccHHHHHHHHHHHhhhHH
Confidence 766655432 222211 234555567777777764
No 59
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=92.08 E-value=0.68 Score=38.86 Aligned_cols=87 Identities=16% Similarity=0.099 Sum_probs=64.0
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHh
Q 012466 294 VEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKL 373 (463)
Q Consensus 294 l~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~i 373 (463)
+..|...|.++|..+...|+++|+++.. +..+..++.+|.-+|..++..++..|-.+.
T Consensus 44 ~~~L~~~L~d~~~~vR~~A~~aL~~~~~------------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~---------- 101 (131)
T 1te4_A 44 FEPLLESLSNEDWRIRGAAAWIIGNFQD------------ERAVEPLIKLLEDDSGFVRSGAARSLEQIG---------- 101 (131)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHGGGCS------------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhcCC------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 3667788888888889999999999862 345666777776677789999888887654
Q ss_pred hcchhHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 012466 374 ASERWAIDRLLRVIKTPHPVPEVCRKAAMILES 406 (463)
Q Consensus 374 a~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~ 406 (463)
.+..+..|+.++.+. ++.+...|+..|..
T Consensus 102 --~~~a~~~L~~~l~d~--~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 102 --GERVRAAMEKLAETG--TGFARKVAVNYLET 130 (131)
T ss_dssp --SHHHHHHHHHHTTSC--CTHHHHHHHHHGGG
T ss_pred --cHHHHHHHHHHHhCC--CHHHHHHHHHHHHh
Confidence 345788889888654 56666666665543
No 60
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=91.50 E-value=4.6 Score=43.45 Aligned_cols=156 Identities=13% Similarity=0.082 Sum_probs=101.3
Q ss_pred hHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCC-ChHHHHHHHHHH
Q 012466 238 HCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSP-FKAWHCAAAELL 316 (463)
Q Consensus 238 ~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~-Dr~~~l~aLE~L 316 (463)
.++..++.++.. ++..+|+.+-.+++.|+.+. ++.. . + ..++..|...+.++ |-.....+++++
T Consensus 95 ~ik~~ll~~l~~---~~~~vr~~~~~~l~~i~~~~----~p~~--~---w---~~ll~~L~~~l~~~~~~~~r~~al~~l 159 (861)
T 2bpt_A 95 QIKTNALTALVS---IEPRIANAAAQLIAAIADIE----LPHG--A---W---PELMKIMVDNTGAEQPENVKRASLLAL 159 (861)
T ss_dssp HHHHHHHHHHTC---SSHHHHHHHHHHHHHHHHHH----GGGT--C---C---HHHHHHHHHHTSTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CchHHHHHHHHHHHHHHHhh----Cccc--c---c---HHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 344555555544 33568999999999998652 1100 1 1 24778888888887 777888999999
Q ss_pred HhhcCCCCCcc-ccCCCchHHHHHHHHhcCCc--HHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhcCCCCC
Q 012466 317 GRLIINPDNEP-FLLPFVPQIHKRLVDLMSLP--AFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPV 393 (463)
Q Consensus 317 ~rLs~~~~Ne~-~ll~~~p~i~~rlv~lL~l~--D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~~~~~~ 393 (463)
+.++..-..+. .+.+..+.++..++..|..+ +.+++.+++.+|.++...-......-...+..+..|..++.+ ++
T Consensus 160 ~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~--~~ 237 (861)
T 2bpt_A 160 GYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQA--ED 237 (861)
T ss_dssp HHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTC--SC
T ss_pred HHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcC--CC
Confidence 99987533211 14456667888888888876 789999999999998654221100000112356666666644 36
Q ss_pred hHHHHHHHHHHHHhhcC
Q 012466 394 PEVCRKAAMILESLVSE 410 (463)
Q Consensus 394 ~em~rrAA~~L~~l~~~ 410 (463)
+++.+.|...|..++..
T Consensus 238 ~~~r~~a~~~l~~l~~~ 254 (861)
T 2bpt_A 238 IEVQAAAFGCLCKIMSK 254 (861)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666777777777653
No 61
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=91.47 E-value=1.4 Score=47.23 Aligned_cols=94 Identities=13% Similarity=0.053 Sum_probs=71.7
Q ss_pred ChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCC
Q 012466 253 EDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPF 332 (463)
Q Consensus 253 ~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~ 332 (463)
.+..+|-.||-++++|+.. .+. ..++..|..+|.+++..+...|+.++.++..... +.+
T Consensus 119 ~n~~vr~lAL~~L~~i~~~--------------~~~--~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p--~~v--- 177 (618)
T 1w63_A 119 STQFVQGLALCTLGCMGSS--------------EMC--RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVP--ELM--- 177 (618)
T ss_dssp SSSHHHHHHHHHHHHHCCH--------------HHH--HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCG--GGG---
T ss_pred CCHhHHHHHHHHHHhcCCH--------------HHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCh--HHH---
Confidence 3456899999999999831 121 3467888889999999999999999999987532 222
Q ss_pred chHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHH
Q 012466 333 VPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVD 368 (463)
Q Consensus 333 ~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~ 368 (463)
+.++.++..+|.-+|...+.+++.+|+.+...+.+
T Consensus 178 -~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~ 212 (618)
T 1w63_A 178 -EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPD 212 (618)
T ss_dssp -GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHH
T ss_pred -HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChH
Confidence 34566777888888889999999999999877654
No 62
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=91.32 E-value=1.8 Score=42.68 Aligned_cols=115 Identities=17% Similarity=0.128 Sum_probs=78.2
Q ss_pred HHHHHHHhhCCC--ChHHHHHHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCc--HHHHHHHHHHHHHHhhccCHH
Q 012466 293 AVEAIMGILGSP--FKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLP--AFDAQAAAVGALYNLAEVNVD 368 (463)
Q Consensus 293 ll~tL~~~L~S~--Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~--D~~Ll~aaLe~LY~Lt~l~~~ 368 (463)
++..|...+.++ |......|+++|+.++..-. ...+.+..+.++..++..|..+ +.+++..++.+|.++...-.+
T Consensus 129 ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~-~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~ 207 (462)
T 1ibr_B 129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDID-PEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA 207 (462)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC-GGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCC-chhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 677788888887 77788899999999986432 1245566677899999999887 689999999999987654221
Q ss_pred HHHHhhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcC
Q 012466 369 CRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSE 410 (463)
Q Consensus 369 ~~~~ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~~ 410 (463)
....-...+..+..|..++.. +++++.+.|+..|..++..
T Consensus 208 ~~~~~~~~~~l~~~l~~~~~~--~~~~vr~~~~~~l~~l~~~ 247 (462)
T 1ibr_B 208 NFDKESERHFIMQVVCEATQC--PDTRVRVAALQNLVKIMSL 247 (462)
T ss_dssp HHTSHHHHHHHHHHHHHHTTC--SSHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHH
Confidence 100000112235555555433 4667777788888888754
No 63
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=91.29 E-value=0.67 Score=49.97 Aligned_cols=111 Identities=23% Similarity=0.273 Sum_probs=81.0
Q ss_pred ChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhC-CCChHHHHHHHHHHHhhcCCCCCccccCC
Q 012466 253 EDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILG-SPFKAWHCAAAELLGRLIINPDNEPFLLP 331 (463)
Q Consensus 253 ~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~-S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~ 331 (463)
.+.++|-.+|+.+..|+..-. + +. + -......+..+|. ++|..+...+|++|.+++ ++.|
T Consensus 341 ~~~niry~aL~~l~~l~~~~~------~-~~---~--~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~-~~~N------ 401 (621)
T 2vgl_A 341 RETNLRYLALESMCTLASSEF------S-HE---A--VKTHIETVINALKTERDVSVRQRAVDLLYAMC-DRSN------ 401 (621)
T ss_dssp SCHHHHHHHHHHHHHHTTCTT------T-HH---H--HHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHC-CHHH------
T ss_pred CCcchHHHHHHHHHHHHhccC------c-HH---H--HHHHHHHHHHHhccCCCHhHHHHHHHHHHHHc-Chhh------
Confidence 467899999999999984321 0 00 1 1224566778888 999999999999999997 3444
Q ss_pred CchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhh-cchhHHHHHHHhhcCC
Q 012466 332 FVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLA-SERWAIDRLLRVIKTP 390 (463)
Q Consensus 332 ~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia-~~~~~V~~LV~Ll~~~ 390 (463)
+..+...+..++.-.|.+++..++..+..++ .+.+ ...|.|+.|+.+++.+
T Consensus 402 -v~~Iv~eL~~yl~~~d~~~~~~~v~~I~~la-------~k~~~~~~~~v~~Ll~ll~~~ 453 (621)
T 2vgl_A 402 -AQQIVAEMLSYLETADYSIREEIVLKVAILA-------EKYAVDYTWYVDTILNLIRIA 453 (621)
T ss_dssp -HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-------HHHCSSTHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-------HhcCCcHHHHHHHHHHHHHhh
Confidence 3557778888887788888888887777654 3443 5688899999998654
No 64
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=91.23 E-value=1.9 Score=45.74 Aligned_cols=131 Identities=15% Similarity=0.144 Sum_probs=89.7
Q ss_pred ChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCC
Q 012466 253 EDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPF 332 (463)
Q Consensus 253 ~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~ 332 (463)
.+.++|+.+--.+++++.. . +... ..+..+|..-|.+++......|+++|+++... ..
T Consensus 61 ~~~~~Krl~yl~l~~~~~~---~------~e~~-----~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~~~--------~~ 118 (591)
T 2vgl_B 61 DNLELKKLVYLYLMNYAKS---Q------PDMA-----IMAVNSFVKDCEDPNPLIRALAVRTMGCIRVD--------KI 118 (591)
T ss_dssp SCHHHHHHHHHHHHHHHHH---S------HHHH-----HTTHHHHGGGSSSSSHHHHHHHHHHHHTCCSG--------GG
T ss_pred CCHHHHHHHHHHHHHHccc---C------chHH-----HHHHHHHHHHcCCCCHHHHHHHHHHHHcCChH--------HH
Confidence 4567887776666666531 0 0000 11235566667888888888899999988611 13
Q ss_pred chHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCC
Q 012466 333 VPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEP 411 (463)
Q Consensus 333 ~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~~p 411 (463)
.+.+...+..+|..++..++..+..+|+.+...+.+.. ...+.++.|..+|.+. ++.+..-|+..|..++.+.
T Consensus 119 ~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~----~~~~~~~~l~~lL~d~--d~~V~~~A~~aL~~i~~~~ 191 (591)
T 2vgl_B 119 TEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV----EDQGFLDSLRDLIADS--NPMVVANAVAALSEISESH 191 (591)
T ss_dssp HHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH----HHHHHHHHHHHTTSCS--CHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc----ccccHHHHHHHHhCCC--ChhHHHHHHHHHHHHHhhC
Confidence 34467778888888899999999999999988765422 2246788999998755 6666777778888887653
No 65
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=90.46 E-value=5.9 Score=45.34 Aligned_cols=158 Identities=16% Similarity=0.118 Sum_probs=100.6
Q ss_pred ChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCC
Q 012466 253 EDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPF 332 (463)
Q Consensus 253 ~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~ 332 (463)
.|...|..+++-|.+.-..=... . + + - ..+.++..|...|.+++......|+.+|+.++..-.. +.
T Consensus 18 ~d~~~R~~A~~~L~~~l~~~~~~-~--~-~----~-~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~-----~~ 83 (1230)
T 1u6g_C 18 SDKDFRFMATNDLMTELQKDSIK-L--D-D----D-SERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE-----YQ 83 (1230)
T ss_dssp SSHHHHHHHHHHHHHHTSSSCCS-C--C-T----T-HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH-----HH
T ss_pred CCHhHHHHHHHHHHHHHcccccC-C--C-h----h-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH-----HH
Confidence 46679999987777654321010 0 0 0 0 1345778888889888888888999999999864322 34
Q ss_pred chHHHHHHHHhcCCcHHHHHHHHHHHHHHhhcc-CHHH---HHHhhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhh
Q 012466 333 VPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEV-NVDC---RLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLV 408 (463)
Q Consensus 333 ~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l-~~~~---~~~ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~ 408 (463)
++.+++.++..|.-++...+.++..+|-+++.. +... ...-...+..+..|+..+.. ++++++...|..+|..+.
T Consensus 84 ~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~-~~~~~~~~~al~~l~~~~ 162 (1230)
T 1u6g_C 84 VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAK-QEDVSVQLEALDIMADML 162 (1230)
T ss_dssp HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSC-CSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHH
Confidence 456888888888888888899999999888764 3220 00011245678888888864 346667777777887776
Q ss_pred cCCCcchhHHhhHHHHHHH
Q 012466 409 SEPQNRVLLLAYENAFAEI 427 (463)
Q Consensus 409 ~~p~n~~~ll~~E~~l~~i 427 (463)
.. ....+.||-..+...
T Consensus 163 ~~--~~~~l~~~~~~ll~~ 179 (1230)
T 1u6g_C 163 SR--QGGLLVNFHPSILTC 179 (1230)
T ss_dssp HH--TCSSCTTTHHHHHHH
T ss_pred HH--hHhHHHHHHHHHHHH
Confidence 42 112344554544443
No 66
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=89.74 E-value=3.1 Score=44.81 Aligned_cols=157 Identities=13% Similarity=0.118 Sum_probs=104.0
Q ss_pred hhHHHHHHHhhhccC----CChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHH
Q 012466 237 RHCLETVFQCIEDHV----TEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAA 312 (463)
Q Consensus 237 ~~ll~lLl~~l~~~~----~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~a 312 (463)
+.++..++.++.... +++..+|..+.+.+..++..+. . . + -..++..+...+.+.+-....+|
T Consensus 323 ~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~-~----~------~--~~~l~~~l~~~l~~~~~~~r~~a 389 (861)
T 2bpt_A 323 KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG-N----H------I--LEPVLEFVEQNITADNWRNREAA 389 (861)
T ss_dssp HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG-G----G------G--HHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc-H----h------H--HHHHHHHHHHHcCCCChhHHHHH
Confidence 445555665665432 1223689999999999986543 1 1 1 13467778888888776778899
Q ss_pred HHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhcCCCC
Q 012466 313 AELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHP 392 (463)
Q Consensus 313 LE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~~~~~ 392 (463)
+.+++.++..-. ...+.+.+++++..++..+..++..++..++.+|-+++..-...-..-...+..+..|+..+.+.
T Consensus 390 ~~~l~~i~~~~~-~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-- 466 (861)
T 2bpt_A 390 VMAFGSIMDGPD-KVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-- 466 (861)
T ss_dssp HHHHHHTSSSSC-HHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC--
T ss_pred HHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC--
Confidence 999999985432 12344556678888888888888899999988887777531100000112345677777777542
Q ss_pred ChHHHHHHHHHHHHhhcC
Q 012466 393 VPEVCRKAAMILESLVSE 410 (463)
Q Consensus 393 ~~em~rrAA~~L~~l~~~ 410 (463)
+++.+.|+.+|.++++.
T Consensus 467 -~~v~~~a~~al~~l~~~ 483 (861)
T 2bpt_A 467 -PKVATNCSWTIINLVEQ 483 (861)
T ss_dssp -HHHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHHh
Confidence 67788888899888875
No 67
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=89.68 E-value=1.4 Score=36.94 Aligned_cols=86 Identities=22% Similarity=0.180 Sum_probs=66.5
Q ss_pred HHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHHHHHhhc
Q 012466 241 ETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELLGRLI 320 (463)
Q Consensus 241 ~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs 320 (463)
..|+.++.+ .+.++|..++..|+++.. ...+..|..+|.++|..+...|.++|+++.
T Consensus 45 ~~L~~~L~d---~~~~vR~~A~~aL~~~~~--------------------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~ 101 (131)
T 1te4_A 45 EPLLESLSN---EDWRIRGAAAWIIGNFQD--------------------ERAVEPLIKLLEDDSGFVRSGAARSLEQIG 101 (131)
T ss_dssp HHHHHGGGC---SCHHHHHHHHHHHGGGCS--------------------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHC
T ss_pred HHHHHHHcC---CCHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 556666664 457899999999999872 225667777788888888999999999986
Q ss_pred CCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHH
Q 012466 321 INPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYN 361 (463)
Q Consensus 321 ~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~ 361 (463)
. +..+..++.+|.-+|..++..+...|.+
T Consensus 102 ~------------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 102 G------------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp S------------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred c------------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 1 4567788888887888899888887754
No 68
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=88.70 E-value=26 Score=37.59 Aligned_cols=160 Identities=16% Similarity=0.137 Sum_probs=98.7
Q ss_pred hHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHHHHH
Q 012466 238 HCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELLG 317 (463)
Q Consensus 238 ~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~L~ 317 (463)
.++.++...+.. .+...|+.++..+++|+....-.. +. ..-..++..|...+.++...+...|+.+|+
T Consensus 366 ~~l~~l~~~l~~---~~~~~r~~a~~~l~~i~~~~~~~~--------~~-~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~ 433 (876)
T 1qgr_A 366 HVLPFIKEHIKN---PDWRYRDAAVMAFGCILEGPEPSQ--------LK-PLVIQAMPTLIELMKDPSVVVRDTAAWTVG 433 (876)
T ss_dssp HHHHHHHHHTTC---SSHHHHHHHHHHHHHTSSSSCHHH--------HH-HHHHHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHccC---CChHHHHHHHHHHHHHHcCCCHHH--------HH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344444444433 345789999999999996543110 00 001336777888888887777889999999
Q ss_pred hhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHH-----------HHHh-hcchhHHHHHHH
Q 012466 318 RLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDC-----------RLKL-ASERWAIDRLLR 385 (463)
Q Consensus 318 rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~-----------~~~i-a~~~~~V~~LV~ 385 (463)
+++..-.......++++.++..++..|.-+ ..+++.++.+|.++.....+. ...+ -..+..+..|+.
T Consensus 434 ~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~ 512 (876)
T 1qgr_A 434 RICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLE 512 (876)
T ss_dssp HHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHH
T ss_pred HHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHH
Confidence 998764432113466777888888888764 677888888888887531100 0001 234567788888
Q ss_pred hhcCCCC-ChHHHHHHHHHHHHhhcC
Q 012466 386 VIKTPHP-VPEVCRKAAMILESLVSE 410 (463)
Q Consensus 386 Ll~~~~~-~~em~rrAA~~L~~l~~~ 410 (463)
++..... +..+...+..+|..|++.
T Consensus 513 ~l~~~~~~~~~~r~~~~~~l~~l~~~ 538 (876)
T 1qgr_A 513 TTDRPDGHQNNLRSSAYESLMEIVKN 538 (876)
T ss_dssp HTTSCSSCSTTHHHHHHHHHHHHHHT
T ss_pred HHhCcCcchhhHHHHHHHHHHHHHHH
Confidence 8765422 223444566666666554
No 69
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=88.41 E-value=2.5 Score=41.74 Aligned_cols=115 Identities=19% Similarity=0.204 Sum_probs=85.0
Q ss_pred hhHHHHHHHhhhccC----CChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHH
Q 012466 237 RHCLETVFQCIEDHV----TEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAA 312 (463)
Q Consensus 237 ~~ll~lLl~~l~~~~----~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~a 312 (463)
+.++..++.++...+ +.+-..|..+.+.+..++..+. . . + -..++..+...+.+++-....+|
T Consensus 320 ~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-~----~------~--~~~~~~~l~~~l~~~~~~~r~aa 386 (462)
T 1ibr_B 320 QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-D----D------I--VPHVLPFIKEHIKNPDWRYRDAA 386 (462)
T ss_dssp HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-T----T------H--HHHHHHHHHHHTTCSSHHHHHHH
T ss_pred hhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc-H----H------H--HHHHHHHHHHHhcCCChHHHHHH
Confidence 445555666664432 1223589999999999986643 1 1 1 13467778888888888888999
Q ss_pred HHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhcc
Q 012466 313 AELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEV 365 (463)
Q Consensus 313 LE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l 365 (463)
+.+|+.++.... ...+.+.+++++..++..|.-++..++.++..+|-+++..
T Consensus 387 l~~l~~l~~~~~-~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 387 VMAFGCILEGPE-PSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp HHHHHHTSSSSC-TTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCc-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 999999997433 2345667788999999999989999999999999999875
No 70
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=88.03 E-value=3.8 Score=44.22 Aligned_cols=150 Identities=14% Similarity=0.115 Sum_probs=94.3
Q ss_pred HHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCC--ChHHHHHHHHHHHh
Q 012466 241 ETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSP--FKAWHCAAAELLGR 318 (463)
Q Consensus 241 ~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~--Dr~~~l~aLE~L~r 318 (463)
..++.++.... ..+ +.+..+++.|+...... . . + ..++..|...+.++ +......++++|+.
T Consensus 93 ~~ll~~l~~~~---~~~-~~~~~~l~~i~~~~~~~----~--~---w---~~ll~~l~~~l~~~~~~~~~r~~al~~l~~ 156 (876)
T 1qgr_A 93 NYVLHTLGTET---YRP-SSASQCVAGIACAEIPV----N--Q---W---PELIPQLVANVTNPNSTEHMKESTLEAIGY 156 (876)
T ss_dssp HHHHHHTTTCC---SSS-CHHHHHHHHHHHHHGGG----T--C---C---TTHHHHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCc---HHH-HHHHHHHHHHHHhhCcc----c--c---c---HHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 33444444332 235 77788888887552110 1 1 1 22677888888888 77778899999999
Q ss_pred hcCCCCCccccCCCchHHHHHHHHhcCCc--HHHHHHHHHHHHHHhhcc-CHHHHHHhhcchhHHHHHHHhhcCCCCChH
Q 012466 319 LIINPDNEPFLLPFVPQIHKRLVDLMSLP--AFDAQAAAVGALYNLAEV-NVDCRLKLASERWAIDRLLRVIKTPHPVPE 395 (463)
Q Consensus 319 Ls~~~~Ne~~ll~~~p~i~~rlv~lL~l~--D~~Ll~aaLe~LY~Lt~l-~~~~~~~ia~~~~~V~~LV~Ll~~~~~~~e 395 (463)
++..-. .+.+.+..+.++..+...|..+ +.+++..++.+|..+... +....... .....+..+..++.. ++.+
T Consensus 157 l~~~~~-~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~-~~~~il~~l~~~~~~--~~~~ 232 (876)
T 1qgr_A 157 ICQDID-PEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKES-ERHFIMQVVCEATQC--PDTR 232 (876)
T ss_dssp HHHHSC-HHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHH-HHHHHHHHHHHHTTC--SSHH
T ss_pred HHHhcC-HhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHcCC--CCHH
Confidence 986422 1234566677888888888876 578999999999998764 22111000 012245666666543 3566
Q ss_pred HHHHHHHHHHHhhcC
Q 012466 396 VCRKAAMILESLVSE 410 (463)
Q Consensus 396 m~rrAA~~L~~l~~~ 410 (463)
+.+.|...|..+++.
T Consensus 233 vr~~a~~~l~~l~~~ 247 (876)
T 1qgr_A 233 VRVAALQNLVKIMSL 247 (876)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666777888888763
No 71
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=81.63 E-value=8.8 Score=36.24 Aligned_cols=96 Identities=23% Similarity=0.224 Sum_probs=72.2
Q ss_pred hHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCCc
Q 012466 254 DEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFV 333 (463)
Q Consensus 254 d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~ 333 (463)
|...|-+.=..|+-|+.-- |. . ....+.-+..++.|+|+..-+.||..++.+..|.- .+..|+
T Consensus 120 d~kikIn~~yaLeeIaran---------P~---l--~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~--~yv~Pf- 182 (253)
T 2db0_A 120 DEKTKINVSYALEEIAKAN---------PM---L--MASIVRDFMSMLSSKNREDKLTALNFIEAMGENSF--KYVNPF- 182 (253)
T ss_dssp SHHHHHHHHHHHHHHHHHC---------HH---H--HHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTH--HHHGGG-
T ss_pred CccceecHHHHHHHHHHhC---------hH---H--HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCc--cccCcc-
Confidence 4567777777777776221 11 0 23356777788999999999999999998876653 345554
Q ss_pred hHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHH
Q 012466 334 PQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDC 369 (463)
Q Consensus 334 p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~ 369 (463)
+.|+..||--.|.+.+..++|.|-+++..+++.
T Consensus 183 ---LprL~aLL~D~deiVRaSaVEtL~~lA~~npkl 215 (253)
T 2db0_A 183 ---LPRIINLLHDGDEIVRASAVEALVHLATLNDKL 215 (253)
T ss_dssp ---HHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHH
T ss_pred ---hHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHH
Confidence 457888999999999999999999999999874
No 72
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=81.37 E-value=29 Score=38.74 Aligned_cols=158 Identities=9% Similarity=0.083 Sum_probs=98.9
Q ss_pred hHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCCCC---------
Q 012466 254 DEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPD--------- 324 (463)
Q Consensus 254 d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~--------- 324 (463)
..-+|.-++.+++.++..+. . .. -..++..+..+|.+++..+...|.-+|.+|+...+
T Consensus 471 ~p~vr~~a~~~lg~~~~~~~------~--~~-----l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~ 537 (960)
T 1wa5_C 471 HIILRVDAIKYIYTFRNQLT------K--AQ-----LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIF 537 (960)
T ss_dssp CHHHHHHHHHHHHHTGGGSC------H--HH-----HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSS
T ss_pred CceehHHHHHHHHHHHhhCC------H--HH-----HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccc
Confidence 45688899999999887641 0 11 24577888888888877788899999999987532
Q ss_pred CccccCCCchHHHHHHHHhcCCc-----HHHHHHHHHHHHHHhhcc-CHHHHHHhhcchhHHHHHHHhhcC--CCC-ChH
Q 012466 325 NEPFLLPFVPQIHKRLVDLMSLP-----AFDAQAAAVGALYNLAEV-NVDCRLKLASERWAIDRLLRVIKT--PHP-VPE 395 (463)
Q Consensus 325 Ne~~ll~~~p~i~~rlv~lL~l~-----D~~Ll~aaLe~LY~Lt~l-~~~~~~~ia~~~~~V~~LV~Ll~~--~~~-~~e 395 (463)
....+.|++++++++++.++.-. +..-.+.++++|+.+... ++.. . -.....+.+|+..+.. .+| ++.
T Consensus 538 ~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~-~--p~~~~l~~~L~~~l~~~~~~~~~~~ 614 (960)
T 1wa5_C 538 HKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSI-Q--PLFPQLLAQFIEIVTIMAKNPSNPR 614 (960)
T ss_dssp CGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTT-G--GGHHHHHHHHHHHHHHHTTSCCCHH
T ss_pred cHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhh-h--hHHHHHHHHHHHHHHHHHhCCCCcH
Confidence 24568899999999999988763 111234556666655443 2211 1 1223355666555532 222 344
Q ss_pred HHHHHHHHHHHhhcCCCcchhHHhhHHHHHHHH
Q 012466 396 VCRKAAMILESLVSEPQNRVLLLAYENAFAEIL 428 (463)
Q Consensus 396 m~rrAA~~L~~l~~~p~n~~~ll~~E~~l~~i~ 428 (463)
..-.+-.++..+++. .++..+.+||+.+..+.
T Consensus 615 ~~~~~~e~l~~l~~~-~~~~~~~~~~~~~~p~~ 646 (960)
T 1wa5_C 615 FTHYTFESIGAILNY-TQRQNLPLLVDSMMPTF 646 (960)
T ss_dssp HHHHHHHHHHHHHHT-SCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHH
Confidence 333455555666665 45567788888887754
No 73
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=78.43 E-value=16 Score=39.24 Aligned_cols=103 Identities=13% Similarity=0.134 Sum_probs=70.5
Q ss_pred HHHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcC-CcHHHHHHHHHHHHHHhhccCHHHH
Q 012466 292 RAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMS-LPAFDAQAAAVGALYNLAEVNVDCR 370 (463)
Q Consensus 292 ~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~-l~D~~Ll~aaLe~LY~Lt~l~~~~~ 370 (463)
.....|..+|.++|......||++|.+++......+.+.+ ....++..|. -+|..++..+||.||.++.- +
T Consensus 329 ~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~~~~----~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~--~-- 400 (621)
T 2vgl_A 329 RACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEAVKT----HIETVINALKTERDVSVRQRAVDLLYAMCDR--S-- 400 (621)
T ss_dssp HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHHHHT----THHHHHHHHTTCCCHHHHHHHHHHHHHHCCH--H--
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHHH----HHHHHHHHhccCCCHhHHHHHHHHHHHHcCh--h--
Confidence 4567777888889999999999999999877542222222 3345566677 78999999999999999742 2
Q ss_pred HHhhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhh
Q 012466 371 LKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLV 408 (463)
Q Consensus 371 ~~ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~ 408 (463)
+....|..|..++... +.++.+.+...+..++
T Consensus 401 ----Nv~~Iv~eL~~yl~~~--d~~~~~~~v~~I~~la 432 (621)
T 2vgl_A 401 ----NAQQIVAEMLSYLETA--DYSIREEIVLKVAILA 432 (621)
T ss_dssp ----HHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHH
Confidence 2345667777777654 4555555555555554
No 74
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=77.62 E-value=3.8 Score=38.74 Aligned_cols=115 Identities=6% Similarity=0.145 Sum_probs=78.4
Q ss_pred HHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q 012466 239 CLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELLGR 318 (463)
Q Consensus 239 ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~L~r 318 (463)
++..++..+.. ....++..+-..+.++...++-.. . +- .-+.+++.|...|.+........++.+|++
T Consensus 105 llp~ll~~l~d---kk~~V~~aa~~al~~i~~~~~~~~---~-----~~-~l~~ll~~l~~~l~~k~~~vk~~al~~l~~ 172 (249)
T 2qk1_A 105 VFTPLLDRTKE---KKPSVIEAIRKALLTICKYYDPLA---S-----SG-RNEDMLKDILEHMKHKTPQIRMECTQLFNA 172 (249)
T ss_dssp HHHHHHHGGGC---CCHHHHHHHHHHHHHHHHHSCTTC---T-----TC-TTHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC---CCHHHHHHHHHHHHHHHHHccccc---c-----CC-cHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 44444544443 234576776666666665432110 0 00 013477888888988877888999999999
Q ss_pred hcCCCCCc-cccCCCc-hHHHHHHHHhcCCcHHHHHHHHHHHHHHhhcc
Q 012466 319 LIINPDNE-PFLLPFV-PQIHKRLVDLMSLPAFDAQAAAVGALYNLAEV 365 (463)
Q Consensus 319 Ls~~~~Ne-~~ll~~~-p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l 365 (463)
++..-... ..+.+.+ |+++..++.+|.-.+.+++.++.++|-.+...
T Consensus 173 ~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~ 221 (249)
T 2qk1_A 173 SMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKI 221 (249)
T ss_dssp HHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 98764431 2345566 78899999999999999999999999888764
No 75
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=72.49 E-value=66 Score=34.66 Aligned_cols=159 Identities=16% Similarity=0.129 Sum_probs=91.4
Q ss_pred hhhhhhcCCCCCCcHHHHhhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCc--cccccCCCcccccccchhHHH
Q 012466 216 ASNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLL--DLRIFSSSKQSYIKITREKRA 293 (463)
Q Consensus 216 as~ILRNLSf~~~N~~~LA~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l--~L~~~~~s~~~~l~i~~~~~l 293 (463)
|...|.|++-.+.+.+.+.+...+..+|..++.++ +.++|..+..+|.||+..- +... .+- .+..
T Consensus 54 A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~---~~~Vr~~A~gaLrnL~~~~g~d~~~---------~l~-~~~i 120 (684)
T 4gmo_A 54 AAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDN---NIDSRAAGWEILKVLAQEEEADFCV---------HLY-RLDV 120 (684)
T ss_dssp HHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCS---CHHHHHHHHHHHHHHHHHSCHHHHH---------HHH-HTTH
T ss_pred HHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCC---CHHHHHHHHHHHHHHHhhcCchHHH---------HHH-HcCh
Confidence 45557777777888888887766666666666654 4679999999999998331 1110 000 1113
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHh
Q 012466 294 VEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKL 373 (463)
Q Consensus 294 l~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~i 373 (463)
+..|..++.+ ..+.+..+ ..... ..+..-++++ .++.+.++.+|.+|++.+.+....+
T Consensus 121 l~~L~~~l~~--------~~~~~~~~---~~~~~----~~~~~~~~~~-------~~~~~~~l~lL~~L~e~s~~~~~~v 178 (684)
T 4gmo_A 121 LTAIEHAAKA--------VLETLTTS---EPPFS----KLLKAQQRLV-------WDITGSLLVLIGLLALARDEIHEAV 178 (684)
T ss_dssp HHHHHHHHHH--------HHHHHHCB---TTBGG----GSCHHHHHHH-------HHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHh--------hHHHHhhh---ccccc----cccHHHHHHH-------HHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3333333321 11222211 11100 0111111221 1244556677888888888776666
Q ss_pred hcchhHHHHHHHhhcCCCC-ChHHHHHHHHHHHHhhcC
Q 012466 374 ASERWAIDRLLRVIKTPHP-VPEVCRKAAMILESLVSE 410 (463)
Q Consensus 374 a~~~~~V~~LV~Ll~~~~~-~~em~rrAA~~L~~l~~~ 410 (463)
... +.|..|+.+|...+. +.++..-|+..|..++..
T Consensus 179 ~~~-~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~d 215 (684)
T 4gmo_A 179 ATK-QTILRLLFRLISADIAPQDIYEEAISCLTTLSED 215 (684)
T ss_dssp HTC-HHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTT
T ss_pred Hhc-ccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcc
Confidence 654 677888877754433 457888888888888764
No 76
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=70.60 E-value=32 Score=32.20 Aligned_cols=171 Identities=11% Similarity=0.013 Sum_probs=89.5
Q ss_pred hhhhhcCCCCCCcHHHHhhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHH
Q 012466 217 SNIIRNFSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEA 296 (463)
Q Consensus 217 s~ILRNLSf~~~N~~~LA~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~t 296 (463)
..++.+..........+.....+..++-.++.+ .+..+.+.+|+++..++..+........ ........++..
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~D---sN~~v~~~al~~l~~~~~~~~~~~~~~~----~~~~~~~~~l~~ 106 (278)
T 4ffb_C 34 NQLFRNSVGDISRDDNIQIYWRDPTLFAQYITD---SNVVAQEQAIVALNSLIDAFASSSLKNA----HNITLISTWTPL 106 (278)
T ss_dssp HHHHHTC----------CCTTSCTHHHHHHTTC---SSHHHHHHHHHHHHHHHTTCC---CCHH----HHHHHHHHHHHH
T ss_pred HHHHhhCcccccchhHHHHHHHHHHHHHHHhcc---chHHHHHHHHHHHHHHHHHhhhhhcccc----hhHHHHHHHHHH
Confidence 444555444433333333333444444445543 4566888999999998876554321000 000001223444
Q ss_pred HH-HhhCCCChHHHHHHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhcc-CHHHHHHhh
Q 012466 297 IM-GILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEV-NVDCRLKLA 374 (463)
Q Consensus 297 L~-~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l-~~~~~~~ia 374 (463)
|. .++.+......-.|++++..++.... ....+++.++..+.....-++..|+.+|+.+-.- |.. ..
T Consensus 107 lveK~l~~~k~~~~~~a~~~l~~~~~~~~-------~~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~----~~ 175 (278)
T 4ffb_C 107 LVEKGLTSSRATTKTQSMSCILSLCGLDT-------SITQSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLT----NV 175 (278)
T ss_dssp HHHHTSSCCCHHHHHHHHHHHHHHHHTSS-------SSHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTT----TC
T ss_pred HHHHHhcCccHHHHHHHHHHHHHHHHhcC-------cHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCC----cC
Confidence 44 35666666667778888887764332 1234677888888888889999999999987652 321 22
Q ss_pred cchh----HHHHHHHhhcCCCCChHHHHHHHHHHHHh
Q 012466 375 SERW----AIDRLLRVIKTPHPVPEVCRKAAMILESL 407 (463)
Q Consensus 375 ~~~~----~V~~LV~Ll~~~~~~~em~rrAA~~L~~l 407 (463)
.... .+..|..++++. ++++..-|...+..|
T Consensus 176 ~~k~~l~~i~~~l~k~l~d~--~~~VR~aA~~l~~~l 210 (278)
T 4ffb_C 176 NVQTFLPELLKHVPQLAGHG--DRNVRSQTMNLIVEI 210 (278)
T ss_dssp CHHHHHHHHGGGHHHHHTCS--SHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHH
Confidence 2222 334455555544 665544444444444
No 77
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=65.87 E-value=50 Score=31.72 Aligned_cols=110 Identities=9% Similarity=0.137 Sum_probs=80.9
Q ss_pred hHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHH
Q 012466 290 EKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDC 369 (463)
Q Consensus 290 ~~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~ 369 (463)
.+++.+.|.+.-...| ...+..|.-...|+...+. ...|++++.++.+-.-++.+++-.+.+||.....
T Consensus 14 ~~~v~~lln~A~~~~~-~~kl~~L~qa~el~~~~dp-----~ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~----- 82 (257)
T 3gs3_A 14 RAKVVDWCNELVIASP-STKCELLAKVQETVLGSCA-----ELAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCK----- 82 (257)
T ss_dssp HHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHTTTTG-----GGHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHhhhcCc-HHHHHHHHHHHHHHHccCH-----hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH-----
Confidence 4566777766555556 5778888888888777542 2568899999998877899999999999988763
Q ss_pred HHHhhcchhHHHHHHHhhcCCCCChHHHHHHHHH--------HHHhhcCCCc
Q 012466 370 RLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMI--------LESLVSEPQN 413 (463)
Q Consensus 370 ~~~ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~--------L~~l~~~p~n 413 (463)
.+.-....+|+.|..|+.++ ++.+.|+|-.+ +..++++|.+
T Consensus 83 -~k~~l~~~~l~~L~~Ll~d~--d~~V~K~~I~~~~~iY~~~l~~i~~~~~~ 131 (257)
T 3gs3_A 83 -VKVELLPHVINVVSMLLRDN--SAQVIKRVIQACGSIYKNGLQYLCSLMEP 131 (257)
T ss_dssp -HCGGGHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHHHHHHHTTSSSC
T ss_pred -HHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34455677899999999854 67778777654 5556777653
No 78
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=63.65 E-value=12 Score=37.78 Aligned_cols=133 Identities=12% Similarity=0.069 Sum_probs=90.5
Q ss_pred hhc-CCCCCCcHHHHhhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHH
Q 012466 220 IRN-FSFMPDNEVIMAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIM 298 (463)
Q Consensus 220 LRN-LSf~~~N~~~LA~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~ 298 (463)
|+. ++=.+.=+.++....++-.++-.+.+. +.+...|+|=.+.++..|.+=..- .++ ...+.+-|.
T Consensus 142 Lk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~----~gN~q~Y~L~AL~~LM~~v~Gm~g--------vvs-~~~fI~~ly 208 (339)
T 3dad_A 142 LKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA----DHNYQSYILRALGQLMLFVDGMLG--------VVA-HSDTIQWLY 208 (339)
T ss_dssp HHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS----CHHHHHHHHHHHHHHTTSHHHHHH--------HHH-CHHHHHHHH
T ss_pred HHHHhhcchHHHHHHHHhccHHHHHHHHHhc----ChHHHHHHHHHHHHHHhccccccc--------hhC-CHHHHHHHH
Confidence 444 444566677788777755555444333 456899999999999987431100 000 123667777
Q ss_pred HhhCCCChHHHHHHHHHHHhhcCCCC-CccccCCCchH--------HHHHHHHhcC---CcHHHHHHHHHHHHHHhhcc
Q 012466 299 GILGSPFKAWHCAAAELLGRLIINPD-NEPFLLPFVPQ--------IHKRLVDLMS---LPAFDAQAAAVGALYNLAEV 365 (463)
Q Consensus 299 ~~L~S~Dr~~~l~aLE~L~rLs~~~~-Ne~~ll~~~p~--------i~~rlv~lL~---l~D~~Ll~aaLe~LY~Lt~l 365 (463)
.++.|.++.++.+||++|..++...+ |-.++...+.. .|+++|.+|. ..|.+++.+++-.+-.+-..
T Consensus 209 slv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~ 287 (339)
T 3dad_A 209 TLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAA 287 (339)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhc
Confidence 88889999999999999999988864 54443332221 4889999996 68999999988887765443
No 79
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=63.64 E-value=54 Score=36.47 Aligned_cols=120 Identities=8% Similarity=-0.049 Sum_probs=80.3
Q ss_pred HhhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCC-ccccccCCCcccccccch-hHH-HHHHHHHhhCCCChHHH
Q 012466 233 MAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPL-LDLRIFSSSKQSYIKITR-EKR-AVEAIMGILGSPFKAWH 309 (463)
Q Consensus 233 LA~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~-l~L~~~~~s~~~~l~i~~-~~~-ll~tL~~~L~S~Dr~~~ 309 (463)
+.++|.+...|+.++.... .+.++|+.|.-+|.|.-.. +.-.. . + ..++. .+. +=+.|...+.++++.+.
T Consensus 30 ~~~~p~~~~~L~~il~~~~-~~~~vR~~A~i~lkn~i~~~w~~~~---~-~--~~l~~~~k~~ik~~ll~~l~~~~~~ir 102 (960)
T 1wa5_C 30 LETQDGFGLTLLHVIASTN-LPLSTRLAGALFFKNFIKRKWVDEN---G-N--HLLPANNVELIKKEIVPLMISLPNNLQ 102 (960)
T ss_dssp HHTSTTHHHHHHHHHHCTT-SCHHHHHHHHHHHHHHHHHHSBCSS---S-C--BSSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hhcCCCHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHhcCCCcc---c-C--CCCCHHHHHHHHHHHHHHHHhCCHHHH
Confidence 4457888888877775432 4568999999999987633 22110 0 0 11221 222 22344555545556666
Q ss_pred HHHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhc
Q 012466 310 CAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAE 364 (463)
Q Consensus 310 l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~ 364 (463)
...-++++.++..+-- .-||.++..+++.+.-+|...+..+|.+|+.+..
T Consensus 103 ~~l~~~ia~ia~~d~p-----~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~ 152 (960)
T 1wa5_C 103 VQIGEAISSIADSDFP-----DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFK 152 (960)
T ss_dssp HHHHHHHHHHHHHHST-----TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHhhCc-----cchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 6677888888876431 3588999999999988888889999999999876
No 80
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=59.94 E-value=1.2e+02 Score=33.22 Aligned_cols=95 Identities=17% Similarity=0.129 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCCch
Q 012466 255 EELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVP 334 (463)
Q Consensus 255 ~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p 334 (463)
..+|..++.+++..+.++.-. +.++ ..++..|...|.+ ..+...|..+|.+||.. -...+.|+.+
T Consensus 503 ~~vr~~~~~~l~~~~~~l~~~------~~~l-----~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~--~~~~l~p~~~ 567 (963)
T 2x19_B 503 VQLADTVMFTIGALSEWLADH------PVMI-----NSVLPLVLHALGN--PELSVSSVSTLKKICRE--CKYDLPPYAA 567 (963)
T ss_dssp HHHHHHHHHHHHHTHHHHHHC------HHHH-----TTTHHHHHHHTTC--GGGHHHHHHHHHHHHHH--TGGGCTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHhC------HHHH-----HHHHHHHHHHhCC--chHHHHHHHHHHHHHHH--HHHHHHhhHH
Confidence 447777777777777554211 1111 2255666666654 45667788888888853 2356889999
Q ss_pred HHHHHHHHhcCCc--HHHHHHHHHHHHHHhhc
Q 012466 335 QIHKRLVDLMSLP--AFDAQAAAVGALYNLAE 364 (463)
Q Consensus 335 ~i~~rlv~lL~l~--D~~Ll~aaLe~LY~Lt~ 364 (463)
++++.+..++.-+ +.+.+..+++++-.+..
T Consensus 568 ~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~ 599 (963)
T 2x19_B 568 NIVAVSQDVLMKQIHKTSQCMWLMQALGFLLS 599 (963)
T ss_dssp HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccCCCChHHHHHHHHHHHHHHh
Confidence 9999988887632 45778888888888765
No 81
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=55.95 E-value=18 Score=34.68 Aligned_cols=179 Identities=13% Similarity=0.067 Sum_probs=99.0
Q ss_pred HHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHHHHHh
Q 012466 239 CLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELLGR 318 (463)
Q Consensus 239 ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~L~r 318 (463)
+..+++.++...+. +-=+||++.-++.+-... +.+...+...+.+..-...+.++|++++
T Consensus 57 ~~~~~~ki~~~WP~-----~fP~lDllRl~~~~~~~~---------------~~l~~~l~~~~~~~~~~~~ml~lR~l~N 116 (253)
T 3gae_A 57 LLSFANTIRSNWEI-----KTPAYDIVRLIVKKLPYS---------------SDIKDYIEEGLGNKNITLTMLTVRILVN 116 (253)
T ss_dssp HHHHHHHHHHHCSC-----CHHHHHHHHHHGGGCSCG---------------GGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCc-----cchHHHHHHHHHcCCchH---------------HHHHHHHHHhcCCCchhHHHHHHHHHHH
Confidence 44455566644431 334999999888654322 1122344444555555688999999999
Q ss_pred hcCCCC-CccccCCC--chHHHHHHHHhcCC----cHHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhcC--
Q 012466 319 LIINPD-NEPFLLPF--VPQIHKRLVDLMSL----PAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKT-- 389 (463)
Q Consensus 319 Ls~~~~-Ne~~ll~~--~p~i~~rlv~lL~l----~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~~-- 389 (463)
+-.++. ...++..- ..++++++..-+.- +..-++.++--++||||....... .+......++..+..
T Consensus 117 lF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~----~~~e~~~~l~~~i~~~~ 192 (253)
T 3gae_A 117 CFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGN----SDLELLPIVADAINTKY 192 (253)
T ss_dssp HTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSC----SCTTHHHHHHHHHHTTT
T ss_pred cccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhcc----chHHHHHHHHHHHHHHh
Confidence 988776 44445432 12234443332221 345788888899999998532110 112344555555542
Q ss_pred CC-----CChHHHHHHHHHHHHhhcCCCcchhHHhhHHHHHHH---HhccchhHHHHHHH
Q 012466 390 PH-----PVPEVCRKAAMILESLVSEPQNRVLLLAYENAFAEI---LFSDGRYSDTFARI 441 (463)
Q Consensus 390 ~~-----~~~em~rrAA~~L~~l~~~p~n~~~ll~~E~~l~~i---~~sD~~~~~~~~~i 441 (463)
+. .++|..-|+-.+|=+|...+..--.+-.=-.-+..+ ..+++|+.+++++|
T Consensus 193 ~~~e~~~~d~Ea~yR~LvAlGtL~~~~~~~~~~a~~~~~~~~~~~~~~~e~R~~~v~~ei 252 (253)
T 3gae_A 193 GPLEEYQECEEAAYRLTVAYGNLATVEPTLRQFANSVTWLANIKRSYGNVPRFKDIFDDL 252 (253)
T ss_dssp TTSHHHHHSHHHHHHHHHHHHHHHHHSGGGGCCTTTCHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred cccccccCCHHHHHHHHHHHHHHHhCcHHHHHHhccHHHHHHHHHHcccchHHHHHHHhc
Confidence 21 266788888888877775332111110000122222 23688888888776
No 82
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=54.10 E-value=1.2e+02 Score=33.47 Aligned_cols=116 Identities=11% Similarity=0.034 Sum_probs=66.9
Q ss_pred hhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCC-ccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHH
Q 012466 234 AQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPL-LDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAA 312 (463)
Q Consensus 234 A~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~-l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~a 312 (463)
-++|..+.++..++... .+.++|..+.-+|.|.-.+ +. ..+.+.... | ...+++.+...- +..+.+.-..
T Consensus 35 ~~~p~~w~~~~~lL~~~--~~~~vr~~aa~~L~~~i~~~w~--~l~~~~~~~--i--r~~ll~~l~~~~-~~~~~vr~kl 105 (971)
T 2x1g_F 35 EASPQAWQFSWQLMQLG--KSQEVQFFGAITLHSKLMKHWH--EVPPENREE--L--KQKILESIVRFA-GGPKIVLNRL 105 (971)
T ss_dssp TTSTHHHHHHHHHTCTT--SCHHHHHHHHHHHHHHHHHCGG--GCCGGGHHH--H--HHHHHHHHHHHT-TSCHHHHHHH
T ss_pred HcCHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHHccHh--hCCHHHHHH--H--HHHHHHHHHHhC-CCCHHHHHHH
Confidence 34566777777666543 4678999999999987643 21 111111111 1 122444444432 2246666666
Q ss_pred HHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCc------HHHHHHHHHHHHHHhhc
Q 012466 313 AELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLP------AFDAQAAAVGALYNLAE 364 (463)
Q Consensus 313 LE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~------D~~Ll~aaLe~LY~Lt~ 364 (463)
-++++.++..+-- .||.++..++..+..+ +...++..+++|..+.+
T Consensus 106 ~~~la~i~~~~~p------~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~E 157 (971)
T 2x1g_F 106 CISLGAYIVHMLG------EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPE 157 (971)
T ss_dssp HHHHHHHHHHTTC------C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccc------cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHH
Confidence 7888888877531 4777777888777543 66788999999998884
No 83
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=51.27 E-value=1e+02 Score=33.97 Aligned_cols=145 Identities=12% Similarity=0.080 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCC-----CChHHHHHHHHHHHhhcCCCCCccccC
Q 012466 256 ELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGS-----PFKAWHCAAAELLGRLIINPDNEPFLL 330 (463)
Q Consensus 256 eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S-----~Dr~~~l~aLE~L~rLs~~~~Ne~~ll 330 (463)
+.|..+-|++..++..+. . . + -..++..+...+.+ ++=...-+|+-+++.++..-.... .
T Consensus 436 ~~R~~~~~~l~~~~~~~~-~----~------~--l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~--~ 500 (971)
T 2x1g_F 436 CYRQDISDTFMYCYDVLN-D----Y------I--LEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEE--K 500 (971)
T ss_dssp HHHHHHHHHHHHHHTTCT-T----H------H--HHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC--------
T ss_pred HHHHHHHHHHHHHHHHHh-H----H------H--HHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhh--h
Confidence 477778888877775332 0 0 0 12234444444432 333356677777777765533211 2
Q ss_pred CCchHHHHHHHHhcC-CcHHHHHHHHHHHHHHhhcc-CHHHHHHhhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhh
Q 012466 331 PFVPQIHKRLVDLMS-LPAFDAQAAAVGALYNLAEV-NVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLV 408 (463)
Q Consensus 331 ~~~p~i~~rlv~lL~-l~D~~Ll~aaLe~LY~Lt~l-~~~~~~~ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~ 408 (463)
+.+|++++.+..+.. -++..++..++.+|.+|+.. .... ..-+..+..|++.+. +.+...||.++.+|+
T Consensus 501 ~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~----~~l~~vl~~l~~~l~-----~~v~~~A~~al~~l~ 571 (971)
T 2x1g_F 501 RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENP----AYIPPAINLLVRGLN-----SSMSAQATLGLKELC 571 (971)
T ss_dssp CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC--------CHHHHHHHHHHHHH-----SSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHHHhC-----hHHHHHHHHHHHHHH
Confidence 556677773333332 13678999999999999974 2211 234556677776662 456889999999998
Q ss_pred cCCCcchhHHhhHHHHHH
Q 012466 409 SEPQNRVLLLAYENAFAE 426 (463)
Q Consensus 409 ~~p~n~~~ll~~E~~l~~ 426 (463)
+. .+..+.||=..+.+
T Consensus 572 ~~--~~~~l~p~~~~ll~ 587 (971)
T 2x1g_F 572 RD--CQLQLKPYADPLLN 587 (971)
T ss_dssp HH--CHHHHHHHHHHHHH
T ss_pred HH--HHHhccccHHHHHH
Confidence 54 45666666544443
No 84
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=51.17 E-value=27 Score=34.38 Aligned_cols=118 Identities=10% Similarity=0.097 Sum_probs=78.5
Q ss_pred HHHHHHHHhhCCCCh-HHHHHHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHH
Q 012466 292 RAVEAIMGILGSPFK-AWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCR 370 (463)
Q Consensus 292 ~ll~tL~~~L~S~Dr-~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~ 370 (463)
.++..+...+.++.. .-.+.++|+++++-.+......+....+++++.+...+..++.-++.++--++|||+....+..
T Consensus 147 ~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~ 226 (304)
T 3ebb_A 147 QFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDH 226 (304)
T ss_dssp HHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcC
Confidence 344455555543322 3478999999999888776666666566788899888877778899999999999998632110
Q ss_pred HHhhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCC
Q 012466 371 LKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEP 411 (463)
Q Consensus 371 ~~ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~~p 411 (463)
.+-....+..-+..+++.. .++|..-|+-..|=+|...+
T Consensus 227 -~~~~~~~ll~~l~~il~~~-~d~EalyR~LvALGtL~~~~ 265 (304)
T 3ebb_A 227 -NIEGKAQCLSLISTILEVV-QDLEATFRLLVALGTLISDD 265 (304)
T ss_dssp -CHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHTTC
T ss_pred -CchHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHhCC
Confidence 0101111333334444433 37788999999999988764
No 85
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=47.53 E-value=23 Score=38.36 Aligned_cols=68 Identities=21% Similarity=0.322 Sum_probs=51.5
Q ss_pred HHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHH-HhhcCCCCChHHHHHHHHHHHHhhcCC
Q 012466 340 LVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLL-RVIKTPHPVPEVCRKAAMILESLVSEP 411 (463)
Q Consensus 340 lv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV-~Ll~~~~~~~em~rrAA~~L~~l~~~p 411 (463)
+++.|.-+|.+.+..++-+|.+|++ +..++ ++...++.|..++ .++.+. +.++...||.+|.+|+.+.
T Consensus 39 ll~~L~S~~~~~r~~A~~al~~l~~-~~~~~-~l~~~~~~v~~ll~~lL~D~--~~~Vr~~A~gaLrnL~~~~ 107 (684)
T 4gmo_A 39 VLKDLKSPDAKSRTTAAGAIANIVQ-DAKCR-KLLLREQVVHIVLTETLTDN--NIDSRAAGWEILKVLAQEE 107 (684)
T ss_dssp HHHHHSSSCCSHHHHHHHHHHHHTT-SHHHH-HHHHHTTHHHHHHHTTTTCS--CHHHHHHHHHHHHHHHHHS
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHc-CcHHH-HHHHHcCCHHHHHHHHcCCC--CHHHHHHHHHHHHHHHhhc
Confidence 4455678899999999999999997 65554 4455566776654 566655 8889999999999998653
No 86
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=46.65 E-value=3.2e+02 Score=29.80 Aligned_cols=199 Identities=14% Similarity=0.057 Sum_probs=108.0
Q ss_pred HhhChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCC-ccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHH
Q 012466 233 MAQHRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPL-LDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCA 311 (463)
Q Consensus 233 LA~~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~-l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~ 311 (463)
+-++|..+.++..++... .+.++|..++-+|.|.-.+ +. ..+.+.... | -..+++.+... .+..+.+...
T Consensus 52 ~~~~p~~~~~~~~lL~~~--~~~~vr~~aa~~L~~~i~~~w~--~l~~~~~~~--i--r~~ll~~l~~~-~~~~~~ir~k 122 (963)
T 2x19_B 52 AQVSPQAWHFSWQLLQPD--KVPEIQYFGASALHIKISRYWS--DIPTDQYES--L--KAQLFTQITRF-ASGSKIVLTR 122 (963)
T ss_dssp HHHSTTHHHHHHHHTSTT--SCHHHHHHHHHHHHHHHHHCGG--GSCGGGHHH--H--HHHHHHHHHHT-TTSCHHHHHH
T ss_pred HhcCHHHHHHHHHHhcCC--CchHHHHHHHHHHHHHHHhCHH--hCCHHHHHH--H--HHHHHHHHHHH-cCCCHHHHHH
Confidence 445677777777777643 4678999999999987642 21 111111000 0 11234444432 1224666666
Q ss_pred HHHHHHhhcCCCCCccccCCCchHHHHHHHHhcCC-----cHHHHHHHHHHHHHHhhc-cC-H---H-----HHHHh-hc
Q 012466 312 AAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSL-----PAFDAQAAAVGALYNLAE-VN-V---D-----CRLKL-AS 375 (463)
Q Consensus 312 aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l-----~D~~Ll~aaLe~LY~Lt~-l~-~---~-----~~~~i-a~ 375 (463)
..++++.++..+-- ..||.++..++..+.. ++...++..+.+|..+.+ +. . . ....+ ..
T Consensus 123 l~~~la~i~~~~~p-----~~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~ 197 (963)
T 2x19_B 123 LCVALASLALSMMP-----DAWPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVE 197 (963)
T ss_dssp HHHHHHHHHHHHTT-----TTSTTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC---------CCSGGG
T ss_pred HHHHHHHHHHHhCc-----cccchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHHHHH
Confidence 67888888777431 2378888888888865 355678889999988874 31 0 0 00011 11
Q ss_pred chhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCcc---hhHHhhHHHHHHHHhccchhHHHHHHHHHHHhcCC
Q 012466 376 ERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQNR---VLLLAYENAFAEILFSDGRYSDTFARILYELTSRP 449 (463)
Q Consensus 376 ~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~~p~n~---~~ll~~E~~l~~i~~sD~~~~~~~~~iL~~l~~~~ 449 (463)
.+..+..+..+++....+.++.+.+-.++.+..+.+... +.++++ ++. .+.++++.+....+|.++-+++
T Consensus 198 ~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~~~~~~~ll~~---l~~-~l~~~~~~~~a~~~l~~i~~~~ 270 (963)
T 2x19_B 198 CGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQDCEALIQA---AFA-ALQDSELFDSSVEAIVNAISQP 270 (963)
T ss_dssp HHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCCGGGTHHHHHH---HHH-HTTSTTTHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCCcccchHHHHH---HHH-HhCCchHHHHHHHHHHHHHccc
Confidence 223344444555443222247777777776555533321 112211 111 1356777777777777776654
No 87
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=45.25 E-value=1e+02 Score=31.33 Aligned_cols=104 Identities=13% Similarity=0.164 Sum_probs=72.2
Q ss_pred hHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHH
Q 012466 290 EKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDC 369 (463)
Q Consensus 290 ~~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~ 369 (463)
.+++.+.|.+.-...+ ...+..|.-...|..+.+- ..+++++..++++-..++.+++-.+.+||.....
T Consensus 24 ~~~v~~lln~A~~~~~-~~Kl~~L~q~~EL~l~~dp-----sLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~----- 92 (386)
T 3o2t_A 24 SERVVDLLNQAALITN-DSKITVLKQVQELIINKDP-----TLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACK----- 92 (386)
T ss_dssp HHHHHHHHHHHHHCCS-THHHHHHHHHHHHHHTTCG-----GGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHhhhccCh-HHHHHHHHHHHHHHhccCH-----HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHH-----
Confidence 5667777765433233 3567777777776665432 2456788888899888999999999999975543
Q ss_pred HHHhhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHh
Q 012466 370 RLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESL 407 (463)
Q Consensus 370 ~~~ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l 407 (463)
.+.-....+|+.|..|+.+. ++.+.|+|-.+..+|
T Consensus 93 -~~~el~~~~l~~L~~LL~d~--d~~V~K~~I~~~tsl 127 (386)
T 3o2t_A 93 -RDIELLLKLIANLNMLLRDE--NVNVVKKAILTMTQL 127 (386)
T ss_dssp -HCGGGHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHH
Confidence 23444577889999999754 677888877655443
No 88
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=44.95 E-value=1.2e+02 Score=33.35 Aligned_cols=138 Identities=15% Similarity=0.195 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCCchH
Q 012466 256 ELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQ 335 (463)
Q Consensus 256 eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~ 335 (463)
|.||-+|=-+..+. |+-. . -+..+.++..+|..+|..+.-.|.++|.-++ ....++.
T Consensus 278 EVRHGGLLGLKYL~---DLL~---~---------Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA--------~p~~l~~ 334 (800)
T 3oc3_A 278 QVQFSGLIALGYLK---EFVE---D---------KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP--------ITDSLDL 334 (800)
T ss_dssp HHHHHHHHHHHHTG---GGCC---C---------HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC--------CSSTHHH
T ss_pred eehhhhHHHHHHHH---HHHH---H---------HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc--------chhhHHH
Confidence 68999988888882 2221 0 2457889999999999999999999999998 1133555
Q ss_pred HHHHHHHhcCCcHH--HHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCCc
Q 012466 336 IHKRLVDLMSLPAF--DAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQN 413 (463)
Q Consensus 336 i~~rlv~lL~l~D~--~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~~p~n 413 (463)
++..+-+.|.--|+ ......+++|-.|-+... ..+..+..|.+|.-|+.|. -++|.+-+..+|..+. +
T Consensus 335 LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~----~a~~dp~LVPRL~PFLRHt--ITSVR~AVL~TL~tfL----~ 404 (800)
T 3oc3_A 335 VLEKCWKNIESEELISVSKTSNLSLLTKIYRENP----ELSIPPERLKDIFPCFTSP--VPEVRTSILNMVKNLS----E 404 (800)
T ss_dssp HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCT----TCCCCSGGGGGTGGGGTCS--SHHHHHHHHHHTTTCC----C
T ss_pred HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCc----ccccChHHHHHHHhhhcCC--cHHHHHHHHHHHHHHH----h
Confidence 55555555543232 222333444444444332 2344566777777777765 5666666677777777 3
Q ss_pred chhH-HhhHHHHHH
Q 012466 414 RVLL-LAYENAFAE 426 (463)
Q Consensus 414 ~~~l-l~~E~~l~~ 426 (463)
...+ +-||+-|++
T Consensus 405 ~~~LRLIFQNILLE 418 (800)
T 3oc3_A 405 ESIDFLVAEVVLIE 418 (800)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHhC
Confidence 3333 666665543
No 89
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=44.43 E-value=1.4e+02 Score=29.83 Aligned_cols=89 Identities=15% Similarity=0.046 Sum_probs=53.4
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHH
Q 012466 293 AVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLK 372 (463)
Q Consensus 293 ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ 372 (463)
+...+-.+|.+.+-.+...|+=+..||..... +.+. .++..+-+++.-++...+..++-+||.+...+..+-.+
T Consensus 140 l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p--e~v~----~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~a~~k 213 (355)
T 3tjz_B 140 IERYMKQAIVDKVPSVSSSALVSSLHLLKCSF--DVVK----RWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLAVSK 213 (355)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH--HHHH----TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCH--HHHH----HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchHHHHH
Confidence 44444555555555555555555555542221 1111 14556777788888888899999999999876544333
Q ss_pred hhc--------chhHHHHHHHhh
Q 012466 373 LAS--------ERWAIDRLLRVI 387 (463)
Q Consensus 373 ia~--------~~~~V~~LV~Ll 387 (463)
+.. .+|+.=.|++++
T Consensus 214 Lv~~l~~~~l~~~~~q~~llr~l 236 (355)
T 3tjz_B 214 MISKFTRHGLKSPFAYCMMIRVA 236 (355)
T ss_dssp HHHHHHSSCCSCHHHHHHHHHHH
T ss_pred HHHHHhcCCCcChHHHHHHHHHH
Confidence 321 366666677765
No 90
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=42.92 E-value=1.3e+02 Score=29.00 Aligned_cols=94 Identities=11% Similarity=0.073 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCCch
Q 012466 255 EELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVP 334 (463)
Q Consensus 255 ~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p 334 (463)
..+|+.+-+++..+..- + +...++..++.++.|..--....|+++++.+-...+-. ..
T Consensus 146 ~~vR~~~r~il~~l~~v-----~-----------~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~------~~ 203 (266)
T 2of3_A 146 DNMRTSVRDIVNVLSDV-----V-----------GPLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS------PL 203 (266)
T ss_dssp HHHHHHHHHHHHHHHHH-----H-----------CHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG------GG
T ss_pred HHHHHHHHHHHHHHHHH-----C-----------CHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC------cc
Confidence 45677777777665521 0 13447788888887766455678888888875554422 12
Q ss_pred HHH---HHHHHhcCCcHHHHHHHHHHHHHHhhc-cCHHHH
Q 012466 335 QIH---KRLVDLMSLPAFDAQAAAVGALYNLAE-VNVDCR 370 (463)
Q Consensus 335 ~i~---~rlv~lL~l~D~~Ll~aaLe~LY~Lt~-l~~~~~ 370 (463)
..+ .-++.++.-+|.+++.+|+.++-.+=. .|+...
T Consensus 204 ~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~ 243 (266)
T 2of3_A 204 KSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMW 243 (266)
T ss_dssp GGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred ccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHH
Confidence 244 889999999999999999999874433 355543
No 91
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=41.61 E-value=63 Score=37.01 Aligned_cols=183 Identities=15% Similarity=0.149 Sum_probs=119.2
Q ss_pred hhHHHHHHHhhhcc--CCChHHHHHHHHHHHHhhCCCccccccCCCcccccccc-hhHHHHHHHHHhhCCCChHHHHHHH
Q 012466 237 RHCLETVFQCIEDH--VTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKIT-REKRAVEAIMGILGSPFKAWHCAAA 313 (463)
Q Consensus 237 ~~ll~lLl~~l~~~--~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~-~~~~ll~tL~~~L~S~Dr~~~l~aL 313 (463)
+.++.-|+.++... | .-+.-+|++++.++.... . .+. +-..++..+..++...-..+--.|.
T Consensus 132 ~~~~~~~~~~~~~~~kw----~~k~~~l~~~~~~~~~~~---------~--~~~~~~~~~~p~~~~~~~d~k~~v~~~~~ 196 (986)
T 2iw3_A 132 KALLPHLTNAIVETNKW----QEKIAILAAFSAMVDAAK---------D--QVALRMPELIPVLSETMWDTKKEVKAAAT 196 (986)
T ss_dssp HHHHHHHHHHHHHCCCH----HHHHHHHHHHHHHHHHSH---------H--HHHHHHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHHHHHHHhccccch----HHHHHHHHHHHHHHHHhH---------H--HHHHhccchhcchHhhcccCcHHHHHHHH
Confidence 45566666666432 4 368899999999884211 0 011 0223667778888877778888899
Q ss_pred HHHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhcCCCCC
Q 012466 314 ELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPV 393 (463)
Q Consensus 314 E~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~~~~~~ 393 (463)
+++.++|..-+|. =|.+++|.+++.+. -|+. .-.|+..|.+-|.+.+-..-.+|- .|..|.|=|... .
T Consensus 197 ~~~~~~~~~~~n~-d~~~~~~~~~~~~~----~p~~--~~~~~~~l~~~tfv~~v~~~~l~~---~~p~l~r~l~~~--~ 264 (986)
T 2iw3_A 197 AAMTKATETVDNK-DIERFIPSLIQCIA----DPTE--VPETVHLLGATTFVAEVTPATLSI---MVPLLSRGLNER--E 264 (986)
T ss_dssp HHHHHHGGGCCCT-TTGGGHHHHHHHHH----CTTH--HHHHHHHHTTCCCCSCCCHHHHHH---HHHHHHHHHTSS--S
T ss_pred HHHHHHHhcCCCc-chhhhHHHHHHHhc----Chhh--hHHHHHHhhcCeeEeeecchhHHH---HHHHHHhhhccC--c
Confidence 9999999888885 35677777776663 2422 455566665555554221111211 233344434322 4
Q ss_pred hHHHHHHHHHHHHhhcCCCcchhHHhhHHHHHHHH------hccchhHHHHHHHHHHHh
Q 012466 394 PEVCRKAAMILESLVSEPQNRVLLLAYENAFAEIL------FSDGRYSDTFARILYELT 446 (463)
Q Consensus 394 ~em~rrAA~~L~~l~~~p~n~~~ll~~E~~l~~i~------~sD~~~~~~~~~iL~~l~ 446 (463)
..+-|++|.+..||+|-=+|+...-||-..|+-=. ++||++-..-.+.+=-|.
T Consensus 265 ~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~ 323 (986)
T 2iw3_A 265 TGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLR 323 (986)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHH
T ss_pred chhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence 55679999999999999999999988887776522 579998888777666553
No 92
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=41.18 E-value=85 Score=31.52 Aligned_cols=115 Identities=18% Similarity=0.083 Sum_probs=75.5
Q ss_pred HHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCCchH-HHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhhc
Q 012466 297 IMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQ-IHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLAS 375 (463)
Q Consensus 297 L~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~-i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~ 375 (463)
+...|.+.+......+|--|.++-+.|. ++..+|+.. =+..++....-.+...+.++|-+|-+|-... +-...|.+
T Consensus 123 iiekL~~~~~~~lr~aLfsLk~~~q~D~--~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v-~Gm~gvvs 199 (339)
T 3dad_A 123 ILEKLYSSSGPELRRSLFSLKQIFQEDK--DLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFV-DGMLGVVA 199 (339)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHTCT--THHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSH-HHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHhhcch--HHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhcc-ccccchhC
Confidence 3344445555557777777777333222 344444433 2444555555568889999999998887751 12223555
Q ss_pred chhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCCC-cchh
Q 012466 376 ERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEPQ-NRVL 416 (463)
Q Consensus 376 ~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~~p~-n~~~ 416 (463)
.+..|..|++++.. ....++|.|-.+|..++...+ |.+.
T Consensus 200 ~~~fI~~lyslv~s--~~~~V~k~AL~LL~v~V~~se~~~~l 239 (339)
T 3dad_A 200 HSDTIQWLYTLCAS--LSRLVVKTALKLLLVFVEYSENNAPL 239 (339)
T ss_dssp CHHHHHHHHHGGGC--SCHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred CHHHHHHHHHHHcC--ccHHHHHHHHHHHHHHHccCcccchH
Confidence 78899999999985 367799999999999987765 4443
No 93
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=39.07 E-value=2e+02 Score=29.70 Aligned_cols=163 Identities=13% Similarity=0.085 Sum_probs=91.9
Q ss_pred HHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCC-ccccCCCchHH
Q 012466 258 VTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDN-EPFLLPFVPQI 336 (463)
Q Consensus 258 r~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~N-e~~ll~~~p~i 336 (463)
+--+||++..++.+..-. ..+...+...+.+......+.++|+++++=.++.= ..++.. +.+
T Consensus 243 ~FPaLDLLRl~v~~p~~~---------------~~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~--~~~ 305 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYS---------------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLES--NQV 305 (425)
T ss_dssp CHHHHHHHHHHGGGCSCG---------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTS--HHH
T ss_pred ccHHHHHHHHHHcCCchH---------------HHHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhC--chh
Confidence 444888888887553321 12334444555556667899999999999777652 222322 234
Q ss_pred HHHHHHhcC------C--cHHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhc--CC-----CCChHHHHHHH
Q 012466 337 HKRLVDLMS------L--PAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIK--TP-----HPVPEVCRKAA 401 (463)
Q Consensus 337 ~~rlv~lL~------l--~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~--~~-----~~~~em~rrAA 401 (463)
+..+++.+. + +..-++.+.--++|+||........ ...++..++..+. .+ ..++|..-|+-
T Consensus 306 ~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~----~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlL 381 (425)
T 3pst_A 306 YKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS----DLELLPIVADAINTKYGPLEEYQECEEAAYRLT 381 (425)
T ss_dssp HHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS----CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc----hHHHHHHHHHHHHhhccccccccCCHHHHHHHH
Confidence 555665553 1 2447888888999999986432111 1223344555554 12 12678888888
Q ss_pred HHHHHhhcCCCcchhHHhhHHHHHHHH---hccchhHHHHHHH
Q 012466 402 MILESLVSEPQNRVLLLAYENAFAEIL---FSDGRYSDTFARI 441 (463)
Q Consensus 402 ~~L~~l~~~p~n~~~ll~~E~~l~~i~---~sD~~~~~~~~~i 441 (463)
.+|=+|.........+..--..+..+. ..++|+.++++.|
T Consensus 382 VALGtLv~~~~~~~~~a~~~~~~~~~~~~~~~e~R~~~v~~ei 424 (425)
T 3pst_A 382 VAYGNLATVEPTLRQFANSVTWLANIKRSYGNVPRFKDIFDDL 424 (425)
T ss_dssp HHHHHHHHHCHHHHHHHTTCHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHhcCHHHHHHHHHhcccchHHHHHHHhc
Confidence 888777743211111111001222222 3588888888765
No 94
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=31.45 E-value=1.3e+02 Score=34.17 Aligned_cols=108 Identities=13% Similarity=-0.034 Sum_probs=75.9
Q ss_pred HHHHHHHHHhhcCCCCCccc----cCCCchHHHHHHHHhcC-----CcHHHHHHHHHHHHHHhhccCHHHHHHhhcchhH
Q 012466 309 HCAAAELLGRLIINPDNEPF----LLPFVPQIHKRLVDLMS-----LPAFDAQAAAVGALYNLAEVNVDCRLKLASERWA 379 (463)
Q Consensus 309 ~l~aLE~L~rLs~~~~Ne~~----ll~~~p~i~~rlv~lL~-----l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~ 379 (463)
+-+||-+|+.++..-.|... ..+..|++++-++.++. .+..-++..+.+++-.|+.- ++.++..
T Consensus 460 ~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~rys~~-------~~~~~~~ 532 (980)
T 3ibv_A 460 IEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRYASF-------FDYESAA 532 (980)
T ss_dssp HHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHTGGG-------GGTCCTT
T ss_pred HHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHH-------HhcCchh
Confidence 57778888877766444211 22567777766666654 45678999999999999884 3345667
Q ss_pred HHHHHHhhcC--C--CCChHHHHHHHHHHHHhhcCCCcchhHHhhHHHHH
Q 012466 380 IDRLLRVIKT--P--HPVPEVCRKAAMILESLVSEPQNRVLLLAYENAFA 425 (463)
Q Consensus 380 V~~LV~Ll~~--~--~~~~em~rrAA~~L~~l~~~p~n~~~ll~~E~~l~ 425 (463)
+..++..+.. | |+++.+..+|+..+.++.+ +.|+.+.||=..++
T Consensus 533 l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~--~~~~~L~~~~~~il 580 (980)
T 3ibv_A 533 IPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVK--SIKKQVVNYTESSL 580 (980)
T ss_dssp HHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHH--HTTTTCSSSHHHHH
T ss_pred HHHHHHHHhccccccCCChhHHHHHHHHHHHHHH--HhhHHhhhHHHHHH
Confidence 7777777766 4 5677789999999999987 46667777744443
No 95
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=30.99 E-value=61 Score=32.84 Aligned_cols=163 Identities=13% Similarity=0.085 Sum_probs=90.6
Q ss_pred HHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCC-ccccCCCchHH
Q 012466 258 VTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDN-EPFLLPFVPQI 336 (463)
Q Consensus 258 r~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~N-e~~ll~~~p~i 336 (463)
+--+||++.-++.+..-. ..+...+...+.+......+.++|+++++=.++.= ..++.. +.+
T Consensus 180 ~FP~LDLLRl~v~~~~~~---------------~~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll~~--~~~ 242 (362)
T 3l3f_X 180 KTPAYDIVRLIVKKLPYS---------------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLES--NQV 242 (362)
T ss_dssp CHHHHHHHHHHGGGCSCG---------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTS--HHH
T ss_pred cchHHHHHHHHhcCCChH---------------HHHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHHhc--chh
Confidence 455999999998664322 11333444455555567789999999999777652 222221 113
Q ss_pred HHHHHHhcC--------CcHHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhc--CC-----CCChHHHHHHH
Q 012466 337 HKRLVDLMS--------LPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIK--TP-----HPVPEVCRKAA 401 (463)
Q Consensus 337 ~~rlv~lL~--------l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~--~~-----~~~~em~rrAA 401 (463)
+..+++.+. -+..-++.+.=-++|+||........ ...++..++..+. .+ ..++|..-|+-
T Consensus 243 ~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~----~~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlL 318 (362)
T 3l3f_X 243 YKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS----DLELLPIVADAINTKYGPLEEYQECEEAAYRLT 318 (362)
T ss_dssp HTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS----CTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc----hHHHHHHHHHHHHhhccccccccCCHHHHHHHH
Confidence 444444442 12447888888899999986432111 1223445555554 12 12678888888
Q ss_pred HHHHHhhcCCCcchhHHhhHHHHHHHH---hccchhHHHHHHH
Q 012466 402 MILESLVSEPQNRVLLLAYENAFAEIL---FSDGRYSDTFARI 441 (463)
Q Consensus 402 ~~L~~l~~~p~n~~~ll~~E~~l~~i~---~sD~~~~~~~~~i 441 (463)
.+|=+|...+..-..+..--.-+..+. .+++|+.++++.|
T Consensus 319 VALGtL~~~~~~~~~~a~~~~~~~~~~~~~~~e~R~~~v~~ei 361 (362)
T 3l3f_X 319 VAYGNLATVEPTLRQFANSVTWLANIKRSYGNVPRFKDIFDDL 361 (362)
T ss_dssp HHHHHHHHHCHHHHHTGGGCHHHHHHHHHHTTSHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHhcCHHHHHHHHHhcccchHHHHHHHhc
Confidence 888777753211111100001122222 2588888877764
No 96
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=30.43 E-value=1.6e+02 Score=33.40 Aligned_cols=72 Identities=6% Similarity=0.034 Sum_probs=48.0
Q ss_pred HHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCccccCCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHH
Q 012466 293 AVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEPFLLPFVPQIHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDC 369 (463)
Q Consensus 293 ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~~ll~~~p~i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~ 369 (463)
.+..|..+..+.+......+|+|++....--+- ..+.. +.+++-++.+|. +.+++++|+|||..+..-+++.
T Consensus 194 ~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~-~~i~~--~~ll~~l~~~L~--~~~~r~~A~ecL~ei~~k~~~~ 265 (980)
T 3ibv_A 194 VYEMMLAYSNAKNYGTVGLCLQVYAQWVSWINI-NLIVN--EPCMNLLYSFLQ--IEELRCAACETMTEIVNKKMKP 265 (980)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCH-HHHHC--HHHHHHHHHHTT--SHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCH-Hhhhc--chHHHHHHHHcC--ChHHHHHHHHHHHHHHHcCCCh
Confidence 344555555445666778999999998652221 12221 346777777765 4789999999999999876543
No 97
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=29.81 E-value=4.3e+02 Score=29.50 Aligned_cols=177 Identities=12% Similarity=0.094 Sum_probs=89.5
Q ss_pred ChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHHH
Q 012466 236 HRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAEL 315 (463)
Q Consensus 236 ~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~ 315 (463)
.+.++.++..++... ...+++..+|.++.+....+++... + ...+++.+...+.+ +......|++|
T Consensus 192 ~~~i~~~~~~~l~~~--~~~~~~~~aL~~l~~~l~wi~~~~~---------~--~~~ll~~l~~~~l~-~~~~~~~a~~~ 257 (1049)
T 3m1i_C 192 FEQIFKLCFQVLEQG--SSSSLIVATLESLLRYLHWIPYRYI---------Y--ETNILELLSTKFMT-SPDTRAITLKC 257 (1049)
T ss_dssp HHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTTTSCTHHH---------H--SSSHHHHHHTHHHH-SHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHhhCCHHHH---------h--hhhHHHHHHHHhCC-CHhHHHHHHHH
Confidence 455666667777654 3467999999999888766664421 0 12255555532222 45566788999
Q ss_pred HHhhcCCCCCc------cccCCCchHHHHHHHH-hcC-------------CcHHHHHHHHHHHHHHhhccCHHHHHHhhc
Q 012466 316 LGRLIINPDNE------PFLLPFVPQIHKRLVD-LMS-------------LPAFDAQAAAVGALYNLAEVNVDCRLKLAS 375 (463)
Q Consensus 316 L~rLs~~~~Ne------~~ll~~~p~i~~rlv~-lL~-------------l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~ 375 (463)
|..+....-.. ..+....+.+++.+.. +++ -.|.+.....-+++-.+.+. ....+..
T Consensus 258 L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~---~~~~~~~ 334 (1049)
T 3m1i_C 258 LTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLAR---NRALLES 334 (1049)
T ss_dssp HHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHH---HHHHHHS
T ss_pred HHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHH---HHHHHcC
Confidence 99887662111 1111111223333322 221 12444443333333332221 1111111
Q ss_pred ---chhHHHHHHHhhc--CCCCChHHHHHHHHHHHHhhc----CCCcchhHHhhHHHHHHHHh
Q 012466 376 ---ERWAIDRLLRVIK--TPHPVPEVCRKAAMILESLVS----EPQNRVLLLAYENAFAEILF 429 (463)
Q Consensus 376 ---~~~~V~~LV~Ll~--~~~~~~em~rrAA~~L~~l~~----~p~n~~~ll~~E~~l~~i~~ 429 (463)
....+..++.++- ..|+..++...|-.....++. .|..+..+.++=..|..+.+
T Consensus 335 ~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll 397 (1049)
T 3m1i_C 335 DESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVII 397 (1049)
T ss_dssp CGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHH
Confidence 1222333343331 235566677777777777776 67666666666666665543
No 98
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=25.17 E-value=4.6e+02 Score=30.17 Aligned_cols=158 Identities=15% Similarity=0.113 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHHHHhhCCCChHHHHHHHHHHHhhcCCCCCcc---ccCC
Q 012466 255 EELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAIMGILGSPFKAWHCAAAELLGRLIINPDNEP---FLLP 331 (463)
Q Consensus 255 ~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL~~~L~S~Dr~~~l~aLE~L~rLs~~~~Ne~---~ll~ 331 (463)
.+++..+|+++.+....+++... +.....++..+..++.. ......|++||..+.......+ -+..
T Consensus 221 ~~l~~~aL~~l~~~l~Wi~~~~i---------~~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li~ 289 (1204)
T 3a6p_A 221 CRVGVAALNTLAGYIDWVSMSHI---------TAENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPLMV 289 (1204)
T ss_dssp HHHHHHHHHHHHTTTTTSCHHHH---------HTTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGGG
T ss_pred HHHHHHHHHHHHHHHhccCHHHH---------HhccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHHHH
Confidence 46888889888877655554311 11012366666666653 3356789999999987653211 1222
Q ss_pred Cc-hHHHHHHHHhcC------Cc--HHHHHHHHHHHHHHhhccCHHHHHHhh---------cchhHHHHHHHhhcCCCCC
Q 012466 332 FV-PQIHKRLVDLMS------LP--AFDAQAAAVGALYNLAEVNVDCRLKLA---------SERWAIDRLLRVIKTPHPV 393 (463)
Q Consensus 332 ~~-p~i~~rlv~lL~------l~--D~~Ll~aaLe~LY~Lt~l~~~~~~~ia---------~~~~~V~~LV~Ll~~~~~~ 393 (463)
.+ +...+++++++. +. |.+++...-+++-.+.. ....-+. .....++.++.+.. ||.
T Consensus 290 ~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~---~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~--~~~ 364 (1204)
T 3a6p_A 290 LFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGN---QLCALLGADSDVETPSNFGKYLESFLAFTT--HPS 364 (1204)
T ss_dssp GGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHH---HHHHHHHTCSSCCCCTTHHHHHHHHHHHHT--SSC
T ss_pred HHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHH---HHHHHHhccccccChhHHHHHHHHHHHHHh--Ccc
Confidence 22 323445555531 12 34555555555555542 2211111 12334555555554 556
Q ss_pred hHHHHHHHHHHHHhhcCC--CcchhHHhhHHHHHHHH
Q 012466 394 PEVCRKAAMILESLVSEP--QNRVLLLAYENAFAEIL 428 (463)
Q Consensus 394 ~em~rrAA~~L~~l~~~p--~n~~~ll~~E~~l~~i~ 428 (463)
.++.-.+-.....+.+.. .++..+.+|-..|+++.
T Consensus 365 ~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl 401 (1204)
T 3a6p_A 365 QFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRAS 401 (1204)
T ss_dssp HHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH
Confidence 666655555555566654 35567788888888876
No 99
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=23.75 E-value=2.4e+02 Score=32.42 Aligned_cols=73 Identities=14% Similarity=0.224 Sum_probs=52.0
Q ss_pred ChhHHHHHHHhhhccCCChHHHHHHHHHHHHhhCCCccccccCCCcccccccchhHHHHHHH-HHhhCCCChHHHHHHHH
Q 012466 236 HRHCLETVFQCIEDHVTEDEELVTNALETIVNLAPLLDLRIFSSSKQSYIKITREKRAVEAI-MGILGSPFKAWHCAAAE 314 (463)
Q Consensus 236 ~~~ll~lLl~~l~~~~~~d~eLr~~aLDil~nIA~~l~L~~~~~s~~~~l~i~~~~~ll~tL-~~~L~S~Dr~~~l~aLE 314 (463)
.+.++.++..++... ...++...+|+++.....-+++...- ...++.+| ...|. +......|++
T Consensus 204 ~~~Il~ll~~iL~~~--~~~~lv~~~L~~L~~~~sWI~i~~i~-----------~~~ll~~L~~~~L~--~~~~r~aA~d 268 (1073)
T 3gjx_A 204 FSQIFQLCQFVMENS--QNAPLVHATLETLLRFLNWIPLGYIF-----------ETKLISTLIYKFLN--VPMFRNVSLK 268 (1073)
T ss_dssp CHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTTTSCTHHHH-----------SSSHHHHHHHHTSS--SHHHHHHHHH
T ss_pred HHHHHHHHHHHhccc--CCHHHHHHHHHHHHHHHHhcCHHHhc-----------cchHHHHHHHHhcC--ChHHHHHHHH
Confidence 577777777777654 34679999999999999888876321 13367776 46654 3356788999
Q ss_pred HHHhhcCCC
Q 012466 315 LLGRLIINP 323 (463)
Q Consensus 315 ~L~rLs~~~ 323 (463)
||+-+...+
T Consensus 269 cL~eIv~k~ 277 (1073)
T 3gjx_A 269 CLTEIAGVS 277 (1073)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHHhcc
Confidence 999987663
No 100
>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*
Probab=20.72 E-value=76 Score=19.96 Aligned_cols=18 Identities=44% Similarity=0.732 Sum_probs=12.5
Q ss_pred CCCCcCCCCCCCCCCCCC
Q 012466 18 TPAAKRGRPFGSTSGSSG 35 (463)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~ 35 (463)
+|-..||||=||-+-+.+
T Consensus 3 tpKrpRgRpkGSKNk~~~ 20 (26)
T 2ezd_A 3 TPKRPRGRPKGSKNKGAA 20 (26)
T ss_dssp SCCCCSSCCTTCCCCSCC
T ss_pred CCcCCCCCcCcccccCcc
Confidence 344458999999876544
No 101
>1x4q_A U4/U6 small nuclear ribonucleoprotein PRP3; PWI domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.13 E-value=2.4e+02 Score=22.72 Aligned_cols=63 Identities=16% Similarity=0.134 Sum_probs=39.9
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHhhccCHHHHHHhhcchhHHHHHHHhhcCCCCChHHHHHHHHHHHHhhcCC
Q 012466 336 IHKRLVDLMSLPAFDAQAAAVGALYNLAEVNVDCRLKLASERWAIDRLLRVIKTPHPVPEVCRKAAMILESLVSEP 411 (463)
Q Consensus 336 i~~rlv~lL~l~D~~Ll~aaLe~LY~Lt~l~~~~~~~ia~~~~~V~~LV~Ll~~~~~~~em~rrAA~~L~~l~~~p 411 (463)
+-+++.++|+..|..+++++++.|-. .. ..+.++.+|..||... ...-|.+-=..|.+....|
T Consensus 22 I~kkv~e~LG~eD~~lVd~i~~~l~~--~~---------dpk~l~~~L~~fLd~~--a~~Fv~eLW~lL~~aq~s~ 84 (92)
T 1x4q_A 22 IEKTVKRVLGFSEPTVVTAALNCVGK--GM---------DKKKAADHLKPFLDDS--TLRFVDKLFEAVEEGRSSR 84 (92)
T ss_dssp HHHHHHHHHSSCCHHHHHHHHHHHHT--TC---------CHHHHHHHHTTTTGGG--THHHHHHHHHHHHHHSCSC
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHc--CC---------CHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHHhCC
Confidence 77889999999999999988888872 11 2245667777777543 3333444444444443333
Done!