Query 012467
Match_columns 463
No_of_seqs 214 out of 1384
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 02:57:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012467.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012467hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03388 ascorbase L-ascorbat 100.0 3.1E-89 6.7E-94 712.2 47.5 450 2-451 89-539 (541)
2 PLN02191 L-ascorbate oxidase 100.0 1.3E-87 2.8E-92 700.3 47.7 456 2-458 111-569 (574)
3 PLN02604 oxidoreductase 100.0 2.1E-86 4.6E-91 692.8 48.3 451 2-454 112-565 (566)
4 PLN00044 multi-copper oxidase- 100.0 2E-83 4.2E-88 663.6 44.0 415 2-455 115-559 (596)
5 PLN02991 oxidoreductase 100.0 1.2E-82 2.5E-87 654.4 44.9 405 2-455 114-535 (543)
6 PLN02835 oxidoreductase 100.0 1.9E-82 4.2E-87 656.0 44.5 405 2-455 115-536 (539)
7 PLN02792 oxidoreductase 100.0 1.8E-82 4E-87 654.0 43.2 405 2-455 102-528 (536)
8 PLN02354 copper ion binding / 100.0 5.6E-81 1.2E-85 645.9 43.3 410 2-455 113-543 (552)
9 TIGR03389 laccase laccase, pla 100.0 9.7E-81 2.1E-85 648.9 44.7 422 2-450 90-539 (539)
10 PLN02168 copper ion binding / 100.0 8.1E-81 1.7E-85 642.0 42.9 399 2-451 112-542 (545)
11 TIGR03390 ascorbOXfungal L-asc 100.0 1.6E-75 3.6E-80 607.4 41.5 407 2-437 96-533 (538)
12 KOG1263 Multicopper oxidases [ 100.0 3.9E-75 8.5E-80 595.1 41.0 420 2-457 114-562 (563)
13 TIGR01480 copper_res_A copper- 100.0 6.7E-62 1.4E-66 504.9 38.0 337 2-435 130-586 (587)
14 PRK10965 multicopper oxidase; 100.0 9.9E-58 2.1E-62 470.5 34.0 329 2-435 128-522 (523)
15 PRK10883 FtsI repressor; Provi 100.0 2E-57 4.4E-62 464.3 32.0 318 2-437 128-469 (471)
16 COG2132 SufI Putative multicop 100.0 2.2E-47 4.8E-52 392.2 33.1 331 2-436 118-449 (451)
17 PF00394 Cu-oxidase: Multicopp 100.0 6.7E-32 1.4E-36 238.5 16.1 152 46-212 1-158 (159)
18 TIGR02376 Cu_nitrite_red nitri 100.0 4E-32 8.7E-37 264.0 13.7 182 2-214 110-299 (311)
19 PF07731 Cu-oxidase_2: Multico 100.0 1.8E-30 4E-35 224.4 11.0 107 326-438 31-137 (138)
20 TIGR02376 Cu_nitrite_red nitri 99.6 7.8E-14 1.7E-18 136.0 23.9 213 116-435 59-295 (311)
21 PLN02604 oxidoreductase 99.1 1.6E-09 3.4E-14 114.4 13.3 85 331-437 57-144 (566)
22 TIGR03389 laccase laccase, pla 99.0 5.3E-08 1.2E-12 102.5 21.7 209 116-420 34-263 (539)
23 PLN02835 oxidoreductase 98.9 1.1E-07 2.4E-12 99.5 20.2 73 330-418 203-276 (539)
24 PF07732 Cu-oxidase_3: Multico 98.8 4.4E-09 9.6E-14 87.5 5.5 89 330-438 27-116 (117)
25 TIGR01480 copper_res_A copper- 98.8 4.2E-07 9.2E-12 95.8 20.8 77 330-422 261-337 (587)
26 PLN02792 oxidoreductase 98.8 4.3E-07 9.2E-12 94.9 20.4 199 116-418 47-267 (536)
27 TIGR03390 ascorbOXfungal L-asc 98.8 4.7E-07 1E-11 95.2 19.6 226 116-412 39-266 (538)
28 PLN02354 copper ion binding / 98.8 6.8E-07 1.5E-11 93.8 20.7 75 330-420 208-283 (552)
29 PLN02168 copper ion binding / 98.8 5.9E-07 1.3E-11 93.9 19.9 192 116-411 57-267 (545)
30 TIGR03388 ascorbase L-ascorbat 98.8 4E-07 8.7E-12 95.9 18.7 244 116-419 32-279 (541)
31 PLN02991 oxidoreductase 98.7 8.7E-07 1.9E-11 92.6 19.9 197 116-417 59-276 (543)
32 PLN02191 L-ascorbate oxidase 98.6 1.4E-06 3E-11 92.1 17.8 71 330-416 227-300 (574)
33 PRK10883 FtsI repressor; Provi 98.6 4E-06 8.8E-11 86.7 18.8 74 330-419 221-295 (471)
34 PLN00044 multi-copper oxidase- 98.5 1.8E-05 3.9E-10 83.5 21.0 71 330-416 218-291 (596)
35 PRK10965 multicopper oxidase; 98.4 4.2E-05 9.1E-10 80.0 20.8 216 116-419 77-298 (523)
36 PF00394 Cu-oxidase: Multicopp 98.3 1.2E-06 2.5E-11 77.4 7.0 89 330-434 61-154 (159)
37 TIGR03095 rusti_cyanin rusticy 98.1 1.4E-05 3E-10 69.2 8.7 87 330-435 53-147 (148)
38 PF07731 Cu-oxidase_2: Multico 98.0 6.7E-05 1.4E-09 64.4 10.7 75 116-193 34-119 (138)
39 KOG1263 Multicopper oxidases [ 97.9 0.0014 3E-08 68.8 20.0 223 116-420 59-286 (563)
40 TIGR02656 cyanin_plasto plasto 97.8 0.00011 2.3E-09 59.3 7.4 81 330-435 18-98 (99)
41 TIGR03096 nitroso_cyanin nitro 97.5 0.00042 9.2E-09 58.2 7.9 58 331-421 63-120 (135)
42 COG2132 SufI Putative multicop 97.4 0.017 3.6E-07 59.9 19.9 75 331-421 201-275 (451)
43 PF13473 Cupredoxin_1: Cupredo 97.0 0.0028 6E-08 51.5 7.5 67 330-430 36-102 (104)
44 PF00127 Copper-bind: Copper b 96.5 0.017 3.6E-07 46.4 8.0 81 330-435 18-98 (99)
45 PRK02888 nitrous-oxide reducta 96.4 0.012 2.5E-07 61.9 8.3 75 330-436 556-633 (635)
46 PRK02710 plastocyanin; Provisi 96.3 0.016 3.6E-07 48.2 7.2 70 331-435 49-118 (119)
47 PF07732 Cu-oxidase_3: Multico 95.9 0.0086 1.9E-07 49.7 3.8 88 116-211 26-114 (117)
48 COG4454 Uncharacterized copper 95.8 0.02 4.4E-07 48.9 5.5 93 331-436 65-157 (158)
49 TIGR03096 nitroso_cyanin nitro 95.7 0.044 9.6E-07 46.2 7.2 60 114-192 59-118 (135)
50 TIGR03095 rusti_cyanin rusticy 95.6 0.068 1.5E-06 46.3 8.3 74 117-192 53-131 (148)
51 PF13473 Cupredoxin_1: Cupredo 95.0 0.11 2.5E-06 41.9 7.2 59 114-191 33-91 (104)
52 TIGR02375 pseudoazurin pseudoa 93.9 0.25 5.5E-06 40.8 7.0 35 399-437 54-88 (116)
53 TIGR03102 halo_cynanin halocya 93.1 0.53 1.2E-05 38.8 7.7 72 330-435 43-114 (115)
54 TIGR02657 amicyanin amicyanin. 92.8 0.58 1.3E-05 36.1 7.2 71 330-435 12-82 (83)
55 PF00116 COX2: Cytochrome C ox 92.7 0.7 1.5E-05 38.4 8.1 60 330-423 47-106 (120)
56 PF12690 BsuPI: Intracellular 91.5 0.81 1.7E-05 35.3 6.5 31 162-192 50-82 (82)
57 PF06525 SoxE: Sulfocyanin (So 90.0 3 6.4E-05 37.5 9.4 96 329-437 86-187 (196)
58 PF06525 SoxE: Sulfocyanin (So 89.5 1.4 3.1E-05 39.5 7.1 73 116-191 86-168 (196)
59 TIGR02656 cyanin_plasto plasto 88.3 1.4 3.1E-05 35.1 5.9 67 115-191 16-83 (99)
60 TIGR03094 sulfo_cyanin sulfocy 87.8 5.4 0.00012 35.3 9.3 97 328-437 84-186 (195)
61 COG3794 PetE Plastocyanin [Ene 87.4 2.9 6.3E-05 35.1 7.2 72 331-436 56-127 (128)
62 TIGR02866 CoxB cytochrome c ox 87.3 2.4 5.2E-05 38.7 7.4 69 330-434 118-189 (201)
63 COG4454 Uncharacterized copper 87.0 1.4 3.1E-05 37.8 5.2 74 115-193 62-141 (158)
64 TIGR02375 pseudoazurin pseudoa 82.7 1.2 2.5E-05 36.9 2.8 33 2-36 58-90 (116)
65 PF07705 CARDB: CARDB; InterP 81.9 22 0.00047 27.7 10.1 68 120-196 15-85 (101)
66 PF04151 PPC: Bacterial pre-pe 77.0 18 0.00039 26.5 7.5 65 116-193 5-69 (70)
67 PRK02888 nitrous-oxide reducta 75.8 9.3 0.0002 40.8 7.5 58 116-191 555-614 (635)
68 TIGR01433 CyoA cytochrome o ub 75.6 5.7 0.00012 37.0 5.3 57 331-421 141-197 (226)
69 PF14344 DUF4397: Domain of un 74.8 45 0.00098 27.3 11.4 22 161-182 62-83 (122)
70 COG1622 CyoA Heme/copper-type 72.1 12 0.00027 35.2 6.7 69 331-433 139-208 (247)
71 PF00116 COX2: Cytochrome C ox 70.4 35 0.00076 28.2 8.4 58 116-193 46-103 (120)
72 TIGR01432 QOXA cytochrome aa3 69.0 9.2 0.0002 35.4 5.1 57 331-421 132-188 (217)
73 PF01835 A2M_N: MG2 domain; I 68.6 33 0.00072 26.9 7.7 71 120-195 11-86 (99)
74 COG1470 Predicted membrane pro 68.3 69 0.0015 32.9 11.2 77 114-197 387-470 (513)
75 TIGR02695 azurin azurin. Azuri 67.6 29 0.00063 28.9 7.1 75 117-191 17-109 (125)
76 PRK02710 plastocyanin; Provisi 66.4 20 0.00043 29.6 6.2 58 115-191 46-103 (119)
77 PF07691 PA14: PA14 domain; I 65.1 59 0.0013 27.2 9.2 61 117-182 53-120 (145)
78 PTZ00047 cytochrome c oxidase 65.0 27 0.00059 30.5 6.8 59 331-423 75-133 (162)
79 PF10633 NPCBM_assoc: NPCBM-as 64.5 57 0.0012 24.4 8.0 66 120-194 1-75 (78)
80 TIGR02657 amicyanin amicyanin. 62.4 7 0.00015 30.0 2.5 28 2-33 56-83 (83)
81 PF00127 Copper-bind: Copper b 62.2 37 0.00079 26.9 6.8 64 114-192 15-84 (99)
82 MTH00140 COX2 cytochrome c oxi 61.9 27 0.00059 32.5 6.8 70 330-433 141-211 (228)
83 PF11142 DUF2917: Protein of u 60.4 24 0.00053 25.5 4.9 47 118-176 2-48 (63)
84 PF14874 PapD-like: Flagellar- 59.0 86 0.0019 24.6 8.8 66 119-192 15-84 (102)
85 MTH00047 COX2 cytochrome c oxi 58.3 36 0.00078 30.9 6.7 59 331-423 118-176 (194)
86 smart00758 PA14 domain in bact 57.0 80 0.0017 26.2 8.5 61 117-182 51-112 (136)
87 MTH00139 COX2 cytochrome c oxi 56.4 34 0.00074 31.8 6.5 60 330-423 141-200 (226)
88 MTH00129 COX2 cytochrome c oxi 53.2 36 0.00079 31.7 6.1 60 330-423 141-200 (230)
89 PRK10525 cytochrome o ubiquino 52.2 25 0.00054 34.5 4.9 58 331-422 153-210 (315)
90 MTH00098 COX2 cytochrome c oxi 51.6 42 0.00092 31.2 6.2 62 330-425 141-202 (227)
91 MTH00038 COX2 cytochrome c oxi 51.3 40 0.00086 31.5 6.0 67 330-430 141-207 (229)
92 TIGR03094 sulfo_cyanin sulfocy 50.7 65 0.0014 28.7 6.7 91 116-211 85-185 (195)
93 PF11614 FixG_C: IG-like fold 48.3 74 0.0016 26.0 6.6 47 125-180 34-82 (118)
94 MTH00008 COX2 cytochrome c oxi 47.1 66 0.0014 30.0 6.8 62 330-425 141-202 (228)
95 MTH00154 COX2 cytochrome c oxi 46.8 51 0.0011 30.7 5.9 60 330-423 141-200 (227)
96 PRK10378 inactive ferrous ion 45.0 71 0.0015 32.1 7.0 78 112-212 40-117 (375)
97 MTH00168 COX2 cytochrome c oxi 42.2 68 0.0015 29.8 6.0 60 330-423 141-200 (225)
98 MTH00080 COX2 cytochrome c oxi 41.7 66 0.0014 30.0 5.8 58 331-422 145-202 (231)
99 PF14734 DUF4469: Domain of un 37.6 1.7E+02 0.0037 23.5 6.8 47 148-195 40-86 (102)
100 MTH00027 COX2 cytochrome c oxi 37.2 91 0.002 29.7 6.1 59 330-422 175-233 (262)
101 MTH00023 COX2 cytochrome c oxi 36.6 1.3E+02 0.0029 28.2 7.1 62 330-425 152-213 (240)
102 TIGR03102 halo_cynanin halocya 34.4 1.8E+02 0.0038 23.9 6.6 60 114-191 40-99 (115)
103 PF04379 DUF525: Protein of un 33.5 1.1E+02 0.0023 24.0 5.0 49 125-176 15-67 (90)
104 MTH00051 COX2 cytochrome c oxi 33.5 1.5E+02 0.0033 27.6 7.0 60 330-423 145-204 (234)
105 PRK09918 putative fimbrial cha 32.6 1.2E+02 0.0025 28.3 6.0 21 114-134 74-94 (230)
106 MTH00185 COX2 cytochrome c oxi 32.0 1.8E+02 0.0038 27.2 7.1 62 330-425 141-202 (230)
107 KOG1554 COP9 signalosome, subu 30.8 35 0.00075 32.5 2.1 6 12-17 135-140 (347)
108 COG3354 FlaG Putative archaeal 30.2 3.5E+02 0.0076 23.2 7.9 64 124-193 70-141 (154)
109 PF14016 DUF4232: Protein of u 30.2 1.3E+02 0.0028 25.0 5.4 55 125-182 21-82 (131)
110 PRK15249 fimbrial chaperone pr 29.3 82 0.0018 29.8 4.5 21 114-134 84-104 (253)
111 TIGR02866 CoxB cytochrome c ox 28.7 1.9E+02 0.0041 26.2 6.7 57 117-193 118-174 (201)
112 MTH00117 COX2 cytochrome c oxi 28.7 1.9E+02 0.0042 26.9 6.7 62 330-425 141-202 (227)
113 PRK05461 apaG CO2+/MG2+ efflux 28.4 1.8E+02 0.0039 24.4 5.8 49 125-176 32-84 (127)
114 TIGR02695 azurin azurin. Azuri 28.4 3.5E+02 0.0077 22.6 8.5 93 330-433 17-123 (125)
115 PF08329 ChitinaseA_N: Chitina 28.2 1.2E+02 0.0025 25.7 4.6 43 116-162 75-119 (133)
116 PF14392 zf-CCHC_4: Zinc knuck 27.8 91 0.002 21.1 3.3 40 388-427 5-45 (49)
117 PRK09926 putative chaperone pr 27.6 86 0.0019 29.6 4.3 22 114-135 80-101 (246)
118 PRK15299 fimbrial chaperone pr 27.4 92 0.002 28.9 4.4 22 114-135 75-96 (227)
119 TIGR02745 ccoG_rdxA_fixG cytoc 26.4 2.2E+02 0.0048 29.4 7.2 49 125-181 349-398 (434)
120 MTH00076 COX2 cytochrome c oxi 25.3 2.4E+02 0.0053 26.2 6.8 60 330-423 141-200 (228)
121 PRK15195 fimbrial chaperone pr 25.0 1.2E+02 0.0025 28.3 4.6 22 114-135 76-97 (229)
122 PF00345 PapD_N: Pili and flag 24.6 1.4E+02 0.0031 24.3 4.7 32 115-146 55-91 (122)
123 PF10989 DUF2808: Protein of u 24.4 73 0.0016 27.3 2.9 26 397-422 99-128 (146)
124 PRK13202 ureB urease subunit b 24.1 2.1E+02 0.0047 22.9 5.1 63 117-180 12-84 (104)
125 PF10636 hemP: Hemin uptake pr 24.1 1.3E+02 0.0029 19.4 3.2 18 117-134 15-32 (38)
126 PF14524 Wzt_C: Wzt C-terminal 23.5 3E+02 0.0066 22.5 6.6 72 120-194 31-107 (142)
127 COG4263 NosZ Nitrous oxide red 23.1 2.7E+02 0.0059 28.7 6.8 38 393-430 592-633 (637)
128 cd01304 FMDH_A Formylmethanofu 22.5 11 0.00023 39.7 -3.1 53 356-430 224-276 (541)
129 PF03443 Glyco_hydro_61: Glyco 22.4 3.2E+02 0.0069 25.2 6.9 92 102-195 48-158 (218)
130 COG3121 FimC P pilus assembly 22.0 1.5E+02 0.0031 27.8 4.6 22 114-135 79-100 (235)
131 PF04225 OapA: Opacity-associa 21.6 2.2E+02 0.0047 21.9 4.8 40 119-158 42-82 (85)
132 PRK11385 putativi pili assembl 21.5 1.8E+02 0.0039 27.2 5.1 21 114-134 83-103 (236)
133 PRK15208 long polar fimbrial c 21.0 1.5E+02 0.0032 27.6 4.5 22 114-135 72-93 (228)
134 PRK15295 fimbrial assembly cha 20.7 1.8E+02 0.004 27.0 5.0 22 114-135 71-92 (226)
135 PF07228 SpoIIE: Stage II spor 20.4 1.9E+02 0.0041 25.4 5.0 55 118-173 67-126 (193)
136 PF05506 DUF756: Domain of unk 20.3 4E+02 0.0087 20.3 9.1 58 124-193 20-77 (89)
No 1
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=3.1e-89 Score=712.21 Aligned_cols=450 Identities=75% Similarity=1.305 Sum_probs=344.5
Q ss_pred cccccccceeEEEeccchhhhhcceeeEEEEeCCCCCCCCCCCCcceEEEEeeeecccHHHHHhhhcCCCCCCCCCCCeE
Q 012467 2 LDVWQVQAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFHYDGEFNLLLSDWWHRSVHEQEVGLSSRPLRWIGEPQTL 81 (463)
Q Consensus 2 ~~~~~~~~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~d~e~~l~l~D~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (463)
|+|.+.|+||||||||.+.|+++||+|+|||+++.++..|+.||+|++|+|+||+++...+........+..+..++|++
T Consensus 89 y~f~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~ 168 (541)
T TIGR03388 89 YNFVVDRPGTYFYHGHYGMQRSAGLYGSLIVDVPDGEKEPFHYDGEFNLLLSDWWHKSIHEQEVGLSSKPMRWIGEPQSL 168 (541)
T ss_pred EEEEcCCCEEEEEEecchHHhhccceEEEEEecCCCCCCCccccceEEEEeecccCCCHHHHHhhcccCCCcCCCCCcce
Confidence 78899999999999999999999999999999987656688899999999999999987665555444333334578999
Q ss_pred EECCCCCCCCccccccCCCCccccccCCCCCCCceEEEecCCCeEEEEEEecCcceEEEEEEeCceeEEEEeCCccccee
Q 012467 82 LINGRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPF 161 (463)
Q Consensus 82 liNG~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~P~ 161 (463)
||||+++++|+............|....+..+.+.+++|++||+|||||||+|+.+.+.|+||+|+|+|||+||++++|+
T Consensus 169 liNG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~VIa~DG~~v~P~ 248 (541)
T TIGR03388 169 LINGRGQFNCSLAAKFSSTNLPQCNLKGNEQCAPQILHVEPGKTYRLRIASTTALAALNFAIEGHKLTVVEADGNYVEPF 248 (541)
T ss_pred EECCCCCCCCccccccCccccchhhccCCCCCCceEEEECCCCEEEEEEEcccccceEEEEECCCEEEEEEeCCEecccc
Confidence 99999999887532111112234543344455667799999999999999999999999999999999999999999999
Q ss_pred eEeeEEecCCceEEEEEecCCCCCCceEEEEEecCCCCCCCCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q 012467 162 EVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKPATPPALTLLNYHPTSASKIPLSPPPITPRWDDYDHSKSFSNK 241 (463)
Q Consensus 162 ~~~~l~i~~GeR~dvlV~~~~~~~g~y~ir~~~~~~~~~~~~~~a~l~y~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~ 241 (463)
.++.|.|++||||||+|++++.++++||||+.....+.+....+|||+|+++.....++.+.|..|.+.+..........
T Consensus 249 ~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~~~~~~~~~~~aiL~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~ 328 (541)
T TIGR03388 249 TVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVRGRKPNTPPGLTVLNYYPNSPSRLPPTPPPVTPAWDDFDRSKAFSLA 328 (541)
T ss_pred eeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecccCCCCCccEEEEEEECCCCCCCCCCCCCCCCCCccccchhhccchh
Confidence 99999999999999999998854568999998766544456789999998654432222223334444443222212222
Q ss_pred ccccCCCCCCCCccceEEEEEeeeeccCCeEEEEEecccCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccCCCCCC
Q 012467 242 IFALMGSPKPPTNFHRRLTLLNTQNTINGFTKWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVN 321 (463)
Q Consensus 242 ~~~~~~~~~~p~~~d~~~~~~~~~~~~~~~~~~~iNg~~~~~p~~p~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 321 (463)
+......+.+|...++++.+.......++...|++||.+|..|..|.|.+...+..+.|+...++..+..+++....+..
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (541)
T TIGR03388 329 IKAAMGSPKPPETSDRRIVLLNTQNKINGYTKWAINNVSLTLPHTPYLGSLKYNLLNAFDQKPPPENYPRDYDIFKPPPN 408 (541)
T ss_pred hhccccCCCCCCCCCcEEEEeccCcccCceEEEEECcccCCCCCccHHHHHhhcCCccccCCCCcccccccccccCCCcc
Confidence 22211123344556777765544333345678999999999899999887766555445433333333333332222223
Q ss_pred CCccccceEEEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcc-ccccCCCCCCCccceEEeCCC
Q 012467 322 ANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKE-DEKKFNLKNPPLKNTAVIFPY 400 (463)
Q Consensus 322 ~~~~~~~~~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~-~~~~~n~~~p~~rDTv~v~~~ 400 (463)
...+.++.++.++.|++|||+|+|.+.+.......||||||||+||||++|.|.|+.+ +...+|+.||++|||+.|+++
T Consensus 409 ~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~ 488 (541)
T TIGR03388 409 PNTTTGNGIYRLKFNTTVDVILQNANTLNGNNSETHPWHLHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPY 488 (541)
T ss_pred cccccCceEEEecCCCeEEEEEECCccccCCCCCCCcEEecCCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCC
Confidence 3345567889999999999999997543111234899999999999999999999765 556799999999999999999
Q ss_pred cEEEEEEEcCCceeeeecccchHhHHccceeeeeccccccccCCCCCcccc
Q 012467 401 GWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQALACG 451 (463)
Q Consensus 401 g~~~irf~adnpG~w~~HCHi~~H~~~GM~~~~~~~~~~~~~~P~~~~~C~ 451 (463)
||++|||+|||||.|+|||||+||+..||+++|.|++++++++|+.++.|+
T Consensus 489 gwvvIRF~adNPG~W~~HCHi~~H~~~GM~~~~~e~~~~~~~~P~~~~~C~ 539 (541)
T TIGR03388 489 GWTALRFVADNPGVWAFHCHIEPHLHMGMGVVFAEGVEKVGKLPKEALGCG 539 (541)
T ss_pred ceEEEEEECCCCeEeeeeccchhhhhcccEEEEeccccccCCCCccccCCC
Confidence 999999999999999999999999999999999999999999999999997
No 2
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=1.3e-87 Score=700.31 Aligned_cols=456 Identities=66% Similarity=1.189 Sum_probs=333.9
Q ss_pred cccccccceeEEEeccchhhhhcceeeEEEEeCCCCCCCCCCCCcceEEEEeeeecccHHHHHhhhcCCCCCCCCCCCeE
Q 012467 2 LDVWQVQAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFHYDGEFNLLLSDWWHRSVHEQEVGLSSRPLRWIGEPQTL 81 (463)
Q Consensus 2 ~~~~~~~~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~d~e~~l~l~D~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (463)
|+|.+.|+||||||||++.|+.+||+|+|||+++.+..+++.||+|++|+|+||+++...+....+...+..+..++|++
T Consensus 111 Y~f~~~~~GT~wYHsH~~~q~~~Gl~G~liV~~~~~~~~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~ 190 (574)
T PLN02191 111 YKFTVEKPGTHFYHGHYGMQRSAGLYGSLIVDVAKGPKERLRYDGEFNLLLSDWWHESIPSQELGLSSKPMRWIGEAQSI 190 (574)
T ss_pred EEEECCCCeEEEEeeCcHHHHhCCCEEEEEEccCCCCCCCCCCCeeEEEeeeccccCChHHHHHhhccCCCCcCCCCCce
Confidence 78899999999999999999999999999999876544567789999999999999875544333333333334678999
Q ss_pred EECCCCCCCCccccccCCC-CccccccCCCCCCCceEEEecCCCeEEEEEEecCcceEEEEEEeCceeEEEEeCCcccce
Q 012467 82 LINGRGQFNCSLAAHFSNG-SAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQP 160 (463)
Q Consensus 82 liNG~~~~~~~~~~~~~~~-~~~~c~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~P 160 (463)
||||+++++|+.......+ ....|....+..+.+.+++|++||+|||||||+|+.+.+.|+||||+|+|||+||++++|
T Consensus 191 liNG~g~~~~~~~~~~~~~~~~~~~~~~~n~~~~p~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG~~v~P 270 (574)
T PLN02191 191 LINGRGQFNCSLAAQFSNGTELPMCTFKEGDQCAPQTLRVEPNKTYRIRLASTTALASLNLAVQGHKLVVVEADGNYITP 270 (574)
T ss_pred EECCCCCCCCcccccccCCcccccceeccCCCCCceEEEEcCCCEEEEEEEecCCceeEEEEECCCeEEEEEcCCeeccc
Confidence 9999999988642111111 111233222334556689999999999999999999999999999999999999999999
Q ss_pred eeEeeEEecCCceEEEEEecCCCCCCceEEEEEecCCCCCCCCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCcccccccc
Q 012467 161 FEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKPATPPALTLLNYHPTSASKIPLSPPPITPRWDDYDHSKSFSN 240 (463)
Q Consensus 161 ~~~~~l~i~~GeR~dvlV~~~~~~~g~y~ir~~~~~~~~~~~~~~a~l~y~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~ 240 (463)
+.++.|.|++||||||+|++++.++++||||+.....+.......|||+|++......++.+.|..|.+.+.........
T Consensus 271 ~~v~~l~i~~GqRydVlV~a~~~~~~~y~ira~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~ 350 (574)
T PLN02191 271 FTTDDIDIYSGESYSVLLTTDQDPSQNYYISVGVRGRKPNTTQALTILNYVTAPASKLPSSPPPVTPRWDDFERSKNFSK 350 (574)
T ss_pred eEeeeEEEcCCCeEEEEEECCCCCCCCEEEEEEccccCCCCCCceEEEEECCCCCCCCCCCCCCCCCcccccchhhcccc
Confidence 99999999999999999999984446899999876555334456799999865443222222233343433222211111
Q ss_pred cccccCCCCCCC-CccceEEEEEeeeeccCCeEEEEEecccCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccCCCC
Q 012467 241 KIFALMGSPKPP-TNFHRRLTLLNTQNTINGFTKWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPP 319 (463)
Q Consensus 241 ~~~~~~~~~~~p-~~~d~~~~~~~~~~~~~~~~~~~iNg~~~~~p~~p~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 319 (463)
.+......+.+| ...++.+.+... ....+...|+|||.+|..|..|.|.+...+..+.|+...++..+..+++..+..
T Consensus 351 ~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~~~~n~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (574)
T PLN02191 351 KIFSAMGSPSPPKKYRKRLILLNTQ-NLIDGYTKWAINNVSLVTPATPYLGSVKYNLKLGFNRKSPPRSYRMDYDIMNPP 429 (574)
T ss_pred cccccccCCCCCCcccceEEEeccc-ceeCCeEEEEECcccCcCCCcchHHHHhhccCcccccCCCcccccccccccCCC
Confidence 221111112222 223455544322 112345689999999999999999887765555554333332222223221111
Q ss_pred CCCCccccceEEEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcc-ccccCCCCCCCccceEEeC
Q 012467 320 VNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKE-DEKKFNLKNPPLKNTAVIF 398 (463)
Q Consensus 320 ~~~~~~~~~~~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~-~~~~~n~~~p~~rDTv~v~ 398 (463)
.....+.+..++.++.|++|||+|+|.+...+.....||||||||+||||++|.|.|+++ +...+|+.||++|||+.|+
T Consensus 430 ~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp 509 (574)
T PLN02191 430 PFPNTTTGNGIYVFPFNVTVDVIIQNANVLKGVVSEIHPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILY 509 (574)
T ss_pred ccccccccceeEEecCCCEEEEEEECCCcccCCCCCCCCEEeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeC
Confidence 111223456689999999999999997521001123899999999999999999999864 4467899999999999999
Q ss_pred CCcEEEEEEEcCCceeeeecccchHhHHccceeeeeccccccccCCCCCccccCcccCCC
Q 012467 399 PYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQALACGLTGKRFM 458 (463)
Q Consensus 399 ~~g~~~irf~adnpG~w~~HCHi~~H~~~GM~~~~~~~~~~~~~~P~~~~~C~~~~~~~~ 458 (463)
++||++|||++||||+|+|||||+||+..||+++|+|++++++++|+.++.|+.++.+.+
T Consensus 510 ~~Gw~vIRf~aDNPG~Wl~HCHi~~Hl~~Gm~~~~~e~~~~~~~~p~~~~~C~~~~~~~~ 569 (574)
T PLN02191 510 PYGWTAIRFVTDNPGVWFFHCHIEPHLHMGMGVVFAEGLNRIGKIPDEALGCGLTKQFLM 569 (574)
T ss_pred CCCEEEEEEECCCCEEEEEecCchhhhhcCCEEEEecChhhccCCCcchhhhhccccccc
Confidence 999999999999999999999999999999999999999999999999999998877655
No 3
>PLN02604 oxidoreductase
Probab=100.00 E-value=2.1e-86 Score=692.77 Aligned_cols=451 Identities=52% Similarity=0.964 Sum_probs=335.4
Q ss_pred cccccccceeEEEeccchhhhhcceeeEEEEeCCCCCCCCCCCCcceEEEEeeeecccHHHHHhhhcCCCCCCCCCCCeE
Q 012467 2 LDVWQVQAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFHYDGEFNLLLSDWWHRSVHEQEVGLSSRPLRWIGEPQTL 81 (463)
Q Consensus 2 ~~~~~~~~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~d~e~~l~l~D~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (463)
|+|.+.|+||||||||.+.|+.+||+|+|||+++++++.|+.||+|++|+|+||+++...+...........+..++|++
T Consensus 112 y~f~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~~~d~d~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~ 191 (566)
T PLN02604 112 YEFVVDRPGTYLYHAHYGMQREAGLYGSIRVSLPRGKSEPFSYDYDRSIILTDWYHKSTYEQALGLSSIPFDWVGEPQSL 191 (566)
T ss_pred EEEEcCCCEEEEEeeCcHHHHhCCCeEEEEEEecCCCCCccccCcceEEEeeccccCCHHHHHHhhccCCCccCCCCCce
Confidence 78999999999999999999999999999999987666788899999999999999988776655543332223578999
Q ss_pred EECCCCCCCCccccccCCCCccccccCCCCCCCceEEEecCCCeEEEEEEecCcceEEEEEEeCceeEEEEeCCccccee
Q 012467 82 LINGRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPF 161 (463)
Q Consensus 82 liNG~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~P~ 161 (463)
||||+++++|+....- ......|+ ..+..+.+++++|++||+|||||||+|+.+.++|+||||+|+|||+||++++|+
T Consensus 192 liNG~G~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~v~~g~~~RlRlINa~~~~~~~~sidgH~~~VIa~DG~~v~P~ 269 (566)
T PLN02604 192 LIQGKGRYNCSLVSSP-YLKAGVCN-ATNPECSPYVLTVVPGKTYRLRISSLTALSALSFQIEGHNMTVVEADGHYVEPF 269 (566)
T ss_pred EEcCCCCCCCccccCc-cccccccc-cCCCCCCceEEEecCCCEEEEEEEeccccceEEEEECCCEEEEEEeCCEecccc
Confidence 9999999988741100 00001233 223345667899999999999999999999999999999999999999999999
Q ss_pred eEeeEEecCCceEEEEEecCCCCCCceEEEEEecCCCCCCCCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCccccccccc
Q 012467 162 EVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKPATPPALTLLNYHPTSASKIPLSPPPITPRWDDYDHSKSFSNK 241 (463)
Q Consensus 162 ~~~~l~i~~GeR~dvlV~~~~~~~g~y~ir~~~~~~~~~~~~~~a~l~y~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~ 241 (463)
+++.|.|++||||||+|++++.++++||||+.....+.+...++|||+|+++.....++...+..+.+.+..........
T Consensus 270 ~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~~~~~~~~~~~~aIL~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (566)
T PLN02604 270 VVKNLFIYSGETYSVLVKADQDPSRNYWVTTSVVSRNNTTPPGLAIFNYYPNHPRRSPPTVPPSGPLWNDVEPRLNQSLA 349 (566)
T ss_pred eeeeEEEccCCeEEEEEECCCCCCCCEEEEEecccCCCCCcceeEEEEECCCCCCCCCCCCCCCCCcccccchhhcchhc
Confidence 99999999999999999999843458999987655554457789999998543221111122222233332211111111
Q ss_pred ccccCC-CCCCCCccceEEEEEeeeeccCCeEEEEEecccCCCCCCCCccccccCCCCCCCCCCCCCCCC-CCcccCCCC
Q 012467 242 IFALMG-SPKPPTNFHRRLTLLNTQNTINGFTKWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFS-NEYDVMKPP 319 (463)
Q Consensus 242 ~~~~~~-~~~~p~~~d~~~~~~~~~~~~~~~~~~~iNg~~~~~p~~p~l~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~ 319 (463)
+..... ...++...++++.+....+..++...|+|||.+|..|..|.|.+......+.|+...+|..+. ..++.....
T Consensus 350 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~w~in~~~~~~p~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (566)
T PLN02604 350 IKARHGYIHPPPLTSDRVIVLLNTQNEVNGYRRWSVNNVSFNLPHTPYLIALKENLTGAFDQTPPPEGYDFANYDIYAKP 429 (566)
T ss_pred ccccccCcCCCCCCCCeEEEEeccccccCCeEEEEECcccCCCCCCchhHhhhhcCCCcccCCCCCcccccccccccCCc
Confidence 111111 112334557777665444333456789999999998999988877665555554332332221 011111111
Q ss_pred CCCCccccceEEEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcc-ccccCCCCCCCccceEEeC
Q 012467 320 VNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKE-DEKKFNLKNPPLKNTAVIF 398 (463)
Q Consensus 320 ~~~~~~~~~~~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~-~~~~~n~~~p~~rDTv~v~ 398 (463)
.+.+.+.+..++.++.|++||++|+|.+.+.......||||||||+||||++|.|.|++. +...+|+.||++|||+.|+
T Consensus 430 ~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp 509 (566)
T PLN02604 430 NNSNATSSDSIYRLQFNSTVDIILQNANTMNANNSETHPWHLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVH 509 (566)
T ss_pred cccccccCceEEEccCCCeEEEEEECCccccCCCCCCCCEEecCCceEEEEecCCCCCccccccccCCCCCCccceEEeC
Confidence 111234456789999999999999997543111234899999999999999999999865 4567999999999999999
Q ss_pred CCcEEEEEEEcCCceeeeecccchHhHHccceeeeeccccccccCCCCCccccCcc
Q 012467 399 PYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETVGNIPNQALACGLTG 454 (463)
Q Consensus 399 ~~g~~~irf~adnpG~w~~HCHi~~H~~~GM~~~~~~~~~~~~~~P~~~~~C~~~~ 454 (463)
++||++|||+|||||.|+|||||+||+..||+++|.|++++++++|..++.|+..+
T Consensus 510 ~~gwvvIRF~aDNPG~WlfHCHI~~Hl~~GM~~v~~e~~~~~~~~p~~~~~C~~~~ 565 (566)
T PLN02604 510 PYGWTALRFRADNPGVWAFHCHIESHFFMGMGVVFEEGIERVGKLPSSIMGCGESK 565 (566)
T ss_pred CCceEEEEEECCCCeEeeEeecchhHhhcCCEEEEeeChhhccCCCCCcCccccCC
Confidence 99999999999999999999999999999999999999999999999999998653
No 4
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=2e-83 Score=663.57 Aligned_cols=415 Identities=26% Similarity=0.447 Sum_probs=316.2
Q ss_pred ccccc-ccceeEEEeccchhhhhcceeeEEEEeCCCCCCCCCCC--CcceEEEEeeeecccHHHHHhhhcCCCCCCCCCC
Q 012467 2 LDVWQ-VQAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFHY--DGEFNLLLSDWWHRSVHEQEVGLSSRPLRWIGEP 78 (463)
Q Consensus 2 ~~~~~-~~~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~--d~e~~l~l~D~~~~~~~~~~~~~~~~~~~~~~~~ 78 (463)
|+|.+ .|+||||||||++.|+++||+|+|||+++++.+.|+.+ ++|++|+|+||++++..++...+ ..+.. ...+
T Consensus 115 Y~F~~~dq~GT~WYHsH~~~Q~~~Gl~GalII~~~~~~~~P~~~~~~~e~~i~l~DW~~~~~~~~~~~l-~~g~~-~~~~ 192 (596)
T PLN00044 115 YQFQVKDQVGSFFYAPSTALHRAAGGYGAITINNRDVIPIPFGFPDGGDITLFIADWYARDHRALRRAL-DAGDL-LGAP 192 (596)
T ss_pred EEEEeCCCCceeEeeccchhhhhCcCeeEEEEcCcccccccccCCcccceEEEecccccCCHHHHHHHH-hcCCC-CCCC
Confidence 78888 49999999999999999999999999998765566654 47999999999999876543322 22222 4578
Q ss_pred CeEEECCCCCC--CCccccccCCCCccccccCCCCCCCceEEEecCCCeEEEEEEecCcceEEEEEEeCceeEEEEeCCc
Q 012467 79 QTLLINGRGQF--NCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGN 156 (463)
Q Consensus 79 d~~liNG~~~~--~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~ 156 (463)
|++||||++.. +|+. . ..+...++++|++||+|||||||++..+.+.|+|+||+|+|||+||.
T Consensus 193 d~~lING~g~~~~n~~~----------~-----~~~~~~~~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~mtVIa~DG~ 257 (596)
T PLN00044 193 DGVLINAFGPYQYNDSL----------V-----PPGITYERINVDPGKTYRFRVHNVGVATSLNFRIQGHNLLLVEAEGS 257 (596)
T ss_pred CceEEcccCccccCCcc----------c-----cCCCccceEEECCCCEEEEEEEEccCCceEEEEECCCEEEEEEeCCc
Confidence 99999999875 2321 0 01233458999999999999999999999999999999999999999
Q ss_pred ccceeeEeeEEecCCceEEEEEecCCCCCCceEEEEEec-CCC--CCCCCeEEEEEeCCCCCCCCCCCCCCCCCC-CCCC
Q 012467 157 YVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVR-GRK--PATPPALTLLNYHPTSASKIPLSPPPITPR-WDDY 232 (463)
Q Consensus 157 ~v~P~~~~~l~i~~GeR~dvlV~~~~~~~g~y~ir~~~~-~~~--~~~~~~~a~l~y~~~~~~~~~~~~~p~~p~-~~~~ 232 (463)
+++|+.++.|.|++||||||+|++++..+++||||+... ..+ .+...+.|||+|+++...... +.|..|. +.+.
T Consensus 258 ~v~P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a~~~~~~~~~~~~~~~~AIl~Y~~~~~~~~~--~~P~~p~~~~d~ 335 (596)
T PLN00044 258 YTSQQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVASARFVDAAVVDKLTGVAILHYSNSQGPASG--PLPDAPDDQYDT 335 (596)
T ss_pred ccCceeeeeEEEcCCceEEEEEECCCCCCCceEEEEecccccCccccCcceeEEEEECCCCCCCCC--CCCCCCcccCCc
Confidence 999999999999999999999999984345899998642 222 255678899999875432111 1344443 4555
Q ss_pred cccccccccccccCCC---CCCCCccceEEEEEeeee---------ccCCeEEEEEecccCCCCCCCCccccccCCCCCC
Q 012467 233 DHSKSFSNKIFALMGS---PKPPTNFHRRLTLLNTQN---------TINGFTKWAINNVSLTLPPTPYLGSIKYGLKDAF 300 (463)
Q Consensus 233 ~~~~~~~~~~~~~~~~---~~~p~~~d~~~~~~~~~~---------~~~~~~~~~iNg~~~~~p~~p~l~~~~~~~~~~~ 300 (463)
..+..+...++..... .++|...++...+...+. ...+...|+|||.+|..|++|+|.+.+++.++.|
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~s~Nnvsf~~p~~p~L~a~~~~~~gv~ 415 (596)
T PLN00044 336 AFSINQARSIRWNVTASGARPNPQGSFHYGDITVTDVYLLQSMAPELIDGKLRATLNEISYIAPSTPLMLAQIFNVPGVF 415 (596)
T ss_pred hhhhhhhHhhhhccCCCcCCCCCcccceeeEEeeeeeeeeccccccccCCeEEEEECcccCCCCCCcchhhhhccCCCcc
Confidence 4333333333322211 122322233322222211 0124578999999999999999977776766655
Q ss_pred CC---CCCCCCCCCCcccCCCCCCCCccccceEEEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCC
Q 012467 301 DQ---NGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFT 377 (463)
Q Consensus 301 ~~---~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~ 377 (463)
+. ..+|. .....++.++.++.|++|||+|+|.... .||||||||+|+||++|.|.|+
T Consensus 416 ~~~fp~~pp~--------------~~~~~~t~v~~~~~n~~VeiV~qn~~~~------~HP~HLHGh~F~Vvg~G~G~~~ 475 (596)
T PLN00044 416 KLDFPNHPMN--------------RLPKLDTSIINGTYKGFMEIIFQNNATN------VQSYHLDGYAFFVVGMDYGLWT 475 (596)
T ss_pred cCCCCCCCCc--------------cccccCceEEEcCCCCEEEEEEeCCCCC------CCCeeEcCccEEEEeecCCCCC
Confidence 32 22221 1123356789999999999999997555 8999999999999999999999
Q ss_pred ccccccCCCCCCCccceEEeCCCcEEEEEEEcCCceeeeecccchHhHHccceeee-----ecc-ccccccCCCCCcccc
Q 012467 378 KEDEKKFNLKNPPLKNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVL-----ALG-VETVGNIPNQALACG 451 (463)
Q Consensus 378 ~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~adnpG~w~~HCHi~~H~~~GM~~~~-----~~~-~~~~~~~P~~~~~C~ 451 (463)
..++..+|+.||++|||+.|+++||++|||++||||+|+|||||+.|+..||.++| .++ .++++++|++++.||
T Consensus 476 ~~~~~~~Nl~nPp~RdTv~vp~~gW~aIRF~aDNPG~W~lHCH~~~h~~~Gm~~~~~v~~~~~~~~~~~~~pP~~~~~Cg 555 (596)
T PLN00044 476 DNSRGTYNKWDGVARSTIQVFPGAWTAILVFLDNAGIWNLRVENLDAWYLGQEVYINVVNPEDNSNKTVLPIPDNAIFCG 555 (596)
T ss_pred CCcccccccCCCCccceEEeCCCCeEEEEEecCCCEEehhhccCchhhcccCcEEEEEecCCCCccccccCCCcccCccc
Confidence 77777899999999999999999999999999999999999999999999999998 333 467889999999998
Q ss_pred Cccc
Q 012467 452 LTGK 455 (463)
Q Consensus 452 ~~~~ 455 (463)
..+.
T Consensus 556 ~~~~ 559 (596)
T PLN00044 556 ALSS 559 (596)
T ss_pred cccc
Confidence 6644
No 5
>PLN02991 oxidoreductase
Probab=100.00 E-value=1.2e-82 Score=654.40 Aligned_cols=405 Identities=26% Similarity=0.476 Sum_probs=308.9
Q ss_pred ccccc-ccceeEEEeccchhhhhcceeeEEEEeCCCCCCCCC-CCCcceEEEEeeeecccHHHHHhhhcCCCCCCCCCCC
Q 012467 2 LDVWQ-VQAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPF-HYDGEFNLLLSDWWHRSVHEQEVGLSSRPLRWIGEPQ 79 (463)
Q Consensus 2 ~~~~~-~~~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~-~~d~e~~l~l~D~~~~~~~~~~~~~~~~~~~~~~~~d 79 (463)
|+|.+ .|+||||||||.+.|+.+||+|+|||+++++++.|+ .+|+|++|+|+||+++...++...+. .+.. .+++|
T Consensus 114 Y~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~d~~i~l~DW~~~~~~~~~~~~~-~~~~-~~~~d 191 (543)
T PLN02991 114 YALQVKDQIGSFYYFPSLGFHKAAGGFGAIRISSRPLIPVPFPAPADDYTVLIGDWYKTNHKDLRAQLD-NGGK-LPLPD 191 (543)
T ss_pred EEEEeCCCCcceEEecCcchhhhCCCeeeEEEeCCcccCcccccccceeEEEecceecCCHHHHHHHhh-cCCC-CCCCC
Confidence 78888 499999999999999999999999999987656666 46899999999999998766544432 2222 56899
Q ss_pred eEEECCCCCCCCccccccCCCCccccccCCCCCCCceEEEecCCCeEEEEEEecCcceEEEEEEeCceeEEEEeCCcccc
Q 012467 80 TLLINGRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQ 159 (463)
Q Consensus 80 ~~liNG~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~ 159 (463)
++||||++.. ++++|++||+|||||||+|+.+.+.|+|+||+|+|||+||++++
T Consensus 192 ~~liNG~~~~--------------------------~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tVIa~DG~~~~ 245 (543)
T PLN02991 192 GILINGRGSG--------------------------ATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKLVEVEGTHTI 245 (543)
T ss_pred EEEEccCCCC--------------------------ceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEEEEeCCcccc
Confidence 9999999763 26899999999999999999999999999999999999999999
Q ss_pred eeeEeeEEecCCceEEEEEecCCCCCCceEEEEEecCCCCCCCCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCcc--ccc
Q 012467 160 PFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKPATPPALTLLNYHPTSASKIPLSPPPITPRWDDYDH--SKS 237 (463)
Q Consensus 160 P~~~~~l~i~~GeR~dvlV~~~~~~~g~y~ir~~~~~~~~~~~~~~a~l~y~~~~~~~~~~~~~p~~p~~~~~~~--~~~ 237 (463)
|..++.|.|++||||||+|++++ +.++||||+...... ......|||+|++++..... +.|..|.-..... ...
T Consensus 246 p~~~~~l~i~~GQRydvlv~a~~-~~~~y~i~~~~~~~~-~~~~~~AIl~Y~g~~~~~~~--~~p~~p~~~~~~~~~~~~ 321 (543)
T PLN02991 246 QTPFSSLDVHVGQSYSVLITADQ-PAKDYYIVVSSRFTS-KILITTGVLHYSNSAGPVSG--PIPDGPIQLSWSFDQARA 321 (543)
T ss_pred ceeeeEEEEcCCcEEEEEEECCC-CCCcEEEEEeeccCC-CCcceEEEEEeCCCCCCCCC--CCCCCCccccccccchhh
Confidence 99999999999999999999999 578999999864332 33567899999976432111 1222221100000 001
Q ss_pred ccccccccCCCCCCCC--------ccceEEEEEeeeeccCCeEEEEEecccCCCCCCCCccccccCCCCCCCCCCCCCCC
Q 012467 238 FSNKIFALMGSPKPPT--------NFHRRLTLLNTQNTINGFTKWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENF 309 (463)
Q Consensus 238 ~~~~~~~~~~~~~~p~--------~~d~~~~~~~~~~~~~~~~~~~iNg~~~~~p~~p~l~~~~~~~~~~~~~~~~p~~~ 309 (463)
....+.+... .+.|. ..++.+.+.......++...|+|||.+|..|++|+|.+.++..++.|....-+
T Consensus 322 ~~~~l~p~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~p~L~~~~~~~~g~~~~~~~~--- 397 (543)
T PLN02991 322 IKTNLTASGP-RPNPQGSYHYGKINITRTIRLANSAGNIEGKQRYAVNSASFYPADTPLKLADYFKIAGVYNPGSIP--- 397 (543)
T ss_pred hhhcccCCCC-CCCCCccccccccccceeEEEeecccccCceEEEEECCCccCCCCCChhhhhhhcccCcccccccc---
Confidence 1112222111 11121 12333333322222235578999999999999999987776666655321001
Q ss_pred CCCcccCCCCCCCCccccceEEEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCccccccCCCCCC
Q 012467 310 SNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNP 389 (463)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~~~~~~n~~~p 389 (463)
..+.+......+.++.++.|++|||+|+|.+.. .||||||||+||||++|.|.|+..++..+|+.||
T Consensus 398 -------~~~~~~~~~~~~~v~~~~~~~~VeiViqn~~~~------~HP~HLHGh~F~Vvg~G~G~f~~~~~~~~Nl~nP 464 (543)
T PLN02991 398 -------DQPTNGAIFPVTSVMQTDYKAFVEIVFENWEDI------VQTWHLDGYSFYVVGMELGKWSAASRKVYNLNDA 464 (543)
T ss_pred -------ccCCCCccccCCcEEEcCCCCEEEEEEeCCCCC------CCCeeeCCcceEEEEeCCCCCCcccccccCCCCC
Confidence 000011122335578999999999999998766 8999999999999999999998766678999999
Q ss_pred CccceEEeCCCcEEEEEEEcCCceeeeecccchHhHHccceeee-----eccccccccCCCCCccccCccc
Q 012467 390 PLKNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVL-----ALGVETVGNIPNQALACGLTGK 455 (463)
Q Consensus 390 ~~rDTv~v~~~g~~~irf~adnpG~w~~HCHi~~H~~~GM~~~~-----~~~~~~~~~~P~~~~~C~~~~~ 455 (463)
++|||+.||++||++|||++||||+|+|||||..|+..||.+++ .++.++++++|++++.||..++
T Consensus 465 ~rRDTv~vp~~Gw~vIRF~aDNPG~W~~HCHi~~h~~~gm~~~~~v~~~~~~~~~~~~~P~~~~~Cg~~~~ 535 (543)
T PLN02991 465 VSRCTVQVYPRSWTAIYVSLDNVGMWNLRSELWERQYLGQQFYMRVYTTSTSLRDEYLIPKNALLCGRATG 535 (543)
T ss_pred CcccEEEECCCCEEEEEEECCCCEEeeeeeCccccccccEEEEEEecCCCCccccccCCCcccCccccCCC
Confidence 99999999999999999999999999999999999999999999 5566788999999999986554
No 6
>PLN02835 oxidoreductase
Probab=100.00 E-value=1.9e-82 Score=656.02 Aligned_cols=405 Identities=28% Similarity=0.467 Sum_probs=305.6
Q ss_pred ccccc-ccceeEEEeccchhhhhcceeeEEEEeCCCCCCCCC-CCCcceEEEEeeeecccHHHHHhhhcCCCCCCCCCCC
Q 012467 2 LDVWQ-VQAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPF-HYDGEFNLLLSDWWHRSVHEQEVGLSSRPLRWIGEPQ 79 (463)
Q Consensus 2 ~~~~~-~~~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~-~~d~e~~l~l~D~~~~~~~~~~~~~~~~~~~~~~~~d 79 (463)
|+|.+ .|+||||||||++.|+++||+|+|||+++++.+.|+ .+|+|++|+|+||+++...++...+.. +.. .+.+|
T Consensus 115 Y~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~-g~~-~~~~d 192 (539)
T PLN02835 115 YKFQTKDQIGTFTYFPSTLFHKAAGGFGAINVYERPRIPIPFPLPDGDFTLLVGDWYKTSHKTLQQRLDS-GKV-LPFPD 192 (539)
T ss_pred EEEEECCCCEeEEEEeCccchhcCcccceeEEeCCCCCCcCCCCCCceEEEEeeccccCCHHHHHHHhhc-CCC-CCCCc
Confidence 78876 589999999999999999999999998765444454 459999999999999987765444433 222 56889
Q ss_pred eEEECCCCCCCCccccccCCCCccccccCCCCCCCceEEEecCCCeEEEEEEecCcceEEEEEEeCceeEEEEeCCcccc
Q 012467 80 TLLINGRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQ 159 (463)
Q Consensus 80 ~~liNG~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~ 159 (463)
++||||+..+ .++|++||+|||||||+|+.+.+.|+|+||+|+|||+||++++
T Consensus 193 ~~liNG~~~~---------------------------~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~VI~~DG~~v~ 245 (539)
T PLN02835 193 GVLINGQTQS---------------------------TFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMKLVEVEGSHTI 245 (539)
T ss_pred eEEEccccCc---------------------------eEEECCCCEEEEEEEEcCCCccEEEEECCCEEEEEEECCccCC
Confidence 9999999864 6899999999999999999999999999999999999999999
Q ss_pred eeeEeeEEecCCceEEEEEecCCCCCCceEEEEEecCCCCCCCCeEEEEEeCCCCCCCCCCCCCCCCCCCC---CCcccc
Q 012467 160 PFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKPATPPALTLLNYHPTSASKIPLSPPPITPRWD---DYDHSK 236 (463)
Q Consensus 160 P~~~~~l~i~~GeR~dvlV~~~~~~~g~y~ir~~~~~~~~~~~~~~a~l~y~~~~~~~~~~~~~p~~p~~~---~~~~~~ 236 (463)
|..++.|.|++||||||+|++++ ++|+||||+.....+ ......|+|+|+++.... +.+.|..|... +.....
T Consensus 246 p~~~~~l~i~~GqRydvlv~~~~-~~g~y~i~a~~~~~~-~~~~~~ail~Y~~~~~~~--~~~~p~~p~~~~~~~~~~~~ 321 (539)
T PLN02835 246 QNIYDSLDVHVGQSVAVLVTLNQ-SPKDYYIVASTRFTR-QILTATAVLHYSNSRTPA--SGPLPALPSGELHWSMRQAR 321 (539)
T ss_pred CceeeEEEECcCceEEEEEEcCC-CCCcEEEEEEccccC-CCcceEEEEEECCCCCCC--CCCCCCCCccccccccchhh
Confidence 99999999999999999999998 468999998653332 335678999998653211 11122222210 000000
Q ss_pred cccccccccCCCCCCC-------CccceEEEEEeeeeccCCeEEEEEecccCCCCCCCCccccccCCCCCCCCCCCCCCC
Q 012467 237 SFSNKIFALMGSPKPP-------TNFHRRLTLLNTQNTINGFTKWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENF 309 (463)
Q Consensus 237 ~~~~~~~~~~~~~~~p-------~~~d~~~~~~~~~~~~~~~~~~~iNg~~~~~p~~p~l~~~~~~~~~~~~~~~~p~~~ 309 (463)
.....+......+.+. ...++++.+.......++...|+|||.+|..|+.|.|.+.+++..+.|.....+
T Consensus 322 ~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~iN~~s~~~p~~P~L~~~~~~~~~~~~~~~~~--- 398 (539)
T PLN02835 322 TYRWNLTASAARPNPQGSFHYGKITPTKTIVLANSAPLINGKQRYAVNGVSYVNSDTPLKLADYFGIPGVFSVNSIQ--- 398 (539)
T ss_pred ccccccCccccCCCCCccccccccCCCceEEEeccccccCCeEEEEECCcccCCCCCChhhhhhhcCCCccccCccc---
Confidence 0000111111001100 112445544332222345678999999999999998876665544444211100
Q ss_pred CCCcccCCCCCCCCccccceEEEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCccccccCCCCCC
Q 012467 310 SNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNP 389 (463)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~~~~~~n~~~p 389 (463)
..+.+...+.++.++.++.|++|+|+|+|.+.. .||||||||+||||++|.|.|+......+|+.||
T Consensus 399 -------~~~~~~~~~~~t~~~~~~~~~~Veivi~N~~~~------~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~nl~nP 465 (539)
T PLN02835 399 -------SLPSGGPAFVATSVMQTSLHDFLEVVFQNNEKT------MQSWHLDGYDFWVVGYGSGQWTPAKRSLYNLVDA 465 (539)
T ss_pred -------cCCCCCccccCCeEEEcCCCCEEEEEEECCCCC------CCCCCCCCccEEEEeccCCCCCcccccccCCCCC
Confidence 011111234456789999999999999998766 8999999999999999999997655566899999
Q ss_pred CccceEEeCCCcEEEEEEEcCCceeeeecccchHhHHccceeee-----eccccccccCCCCCccccCccc
Q 012467 390 PLKNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVL-----ALGVETVGNIPNQALACGLTGK 455 (463)
Q Consensus 390 ~~rDTv~v~~~g~~~irf~adnpG~w~~HCHi~~H~~~GM~~~~-----~~~~~~~~~~P~~~~~C~~~~~ 455 (463)
++|||+.|+++||++|||+|||||+|+|||||++|+..||+++| .++.++++++|+.++.||..+.
T Consensus 466 ~~RDTv~vp~~gw~~IrF~aDNPG~Wl~HCHi~~H~~~Gm~~~~~V~~~~~~~~~~~~~P~~~~~Cg~~~~ 536 (539)
T PLN02835 466 LTRHTAQVYPKSWTTILVSLDNQGMWNMRSAIWERQYLGQQFYLRVWNQVHSLANEYDIPDNALLCGKAIG 536 (539)
T ss_pred CccceEEeCCCCEEEEEEECcCCEEeeeeecchhhhhcccEEEEEEccCCCccccccCCCccccccccCcc
Confidence 99999999999999999999999999999999999999999999 4556788999999999986654
No 7
>PLN02792 oxidoreductase
Probab=100.00 E-value=1.8e-82 Score=653.96 Aligned_cols=405 Identities=28% Similarity=0.463 Sum_probs=311.0
Q ss_pred cccccc-cceeEEEeccchhhhhcceeeEEEEeCCCCCCCCCC-CCcceEEEEeeeecccHHHHHhhhcCCCCCCCCCCC
Q 012467 2 LDVWQV-QAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFH-YDGEFNLLLSDWWHRSVHEQEVGLSSRPLRWIGEPQ 79 (463)
Q Consensus 2 ~~~~~~-~~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~-~d~e~~l~l~D~~~~~~~~~~~~~~~~~~~~~~~~d 79 (463)
|+|.+. |+||||||||.+.|+.+||+|+|||+++++.+.|+. +|+|++|+|+||+++...++.. ....+.....++|
T Consensus 102 Y~F~~~~q~GT~WYHsH~~~q~~~Gl~G~liI~~~~~~~~p~~~~d~e~~i~l~Dw~~~~~~~~~~-~~~~g~~~~~~~d 180 (536)
T PLN02792 102 YDFQVKDQVGSYFYFPSLAVQKAAGGYGSLRIYSLPRIPVPFPEPAGDFTFLIGDWYRRNHTTLKK-ILDGGRKLPLMPD 180 (536)
T ss_pred EEEEeCCCccceEEecCcchhhhcccccceEEeCCcccCcCCCcccceeEEEecccccCCHHHHHH-HhhccCcCCCCCC
Confidence 788884 999999999999999999999999998765445554 6889999999999998766433 2223322133789
Q ss_pred eEEECCCCCCCCccccccCCCCccccccCCCCCCCceEEEecCCCeEEEEEEecCcceEEEEEEeCceeEEEEeCCcccc
Q 012467 80 TLLINGRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQ 159 (463)
Q Consensus 80 ~~liNG~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~ 159 (463)
++||||++...| ++|+|++||+|||||||+|..+.+.|+|+||+|+|||+||++++
T Consensus 181 ~~liNG~~~~~~------------------------~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~~DG~~v~ 236 (536)
T PLN02792 181 GVMINGQGVSYV------------------------YSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIEVEGTHTV 236 (536)
T ss_pred EEEEeccCCCCc------------------------ceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEEeCCccCC
Confidence 999999987522 37999999999999999999999999999999999999999999
Q ss_pred eeeEeeEEecCCceEEEEEecCCCCCCceEEEEEecCCCCCCCCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCccccccc
Q 012467 160 PFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKPATPPALTLLNYHPTSASKIPLSPPPITPRWDDYDHSKSFS 239 (463)
Q Consensus 160 P~~~~~l~i~~GeR~dvlV~~~~~~~g~y~ir~~~~~~~~~~~~~~a~l~y~~~~~~~~~~~~~p~~p~~~~~~~~~~~~ 239 (463)
|..++.|.|++||||||+|++++ ++|+|||++.....+ ......|||+|+++..... ..|..|.+++...+..+.
T Consensus 237 p~~~~~l~i~~GqRydVlV~a~~-~~g~Y~i~a~~~~~~-~~~~~~ail~Y~g~~~~~~---~~p~~p~~~~~~~~~~~~ 311 (536)
T PLN02792 237 QSMYTSLDIHVGQTYSVLVTMDQ-PPQNYSIVVSTRFIA-AKVLVSSTLHYSNSKGHKI---IHARQPDPDDLEWSIKQA 311 (536)
T ss_pred CcceeEEEEccCceEEEEEEcCC-CCceEEEEEEeccCC-CCCceEEEEEECCCCCCCC---CCCCCCCcCCccccccch
Confidence 99999999999999999999998 578999999865433 3456789999987543211 123333344333322221
Q ss_pred ccccccC--C-CCCCCCc--------cceEEEEEeeeeccCCeEEEEEecccCCCCCCCCccccccCCCCCCC----CCC
Q 012467 240 NKIFALM--G-SPKPPTN--------FHRRLTLLNTQNTINGFTKWAINNVSLTLPPTPYLGSIKYGLKDAFD----QNG 304 (463)
Q Consensus 240 ~~~~~~~--~-~~~~p~~--------~d~~~~~~~~~~~~~~~~~~~iNg~~~~~p~~p~l~~~~~~~~~~~~----~~~ 304 (463)
..++... + ....|+. .++++.+.......++...|+|||.+|..|++|+|.+.++++.+.+. +..
T Consensus 312 ~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~s~~~p~~p~L~a~~~~~~g~~~~~~~~~~ 391 (536)
T PLN02792 312 QSIRTNLTASGPRTNPQGSYHYGKMKISRTLILESSAALVKRKQRYAINGVSFVPSDTPLKLADHFKIKGVFKVGSIPDK 391 (536)
T ss_pred hhhhhccCCCCCCCCCCcccccceeccceeEEecccccccCceeEEEECCcccCCCCCchhhhhhhccCCCcCcccCccC
Confidence 1111111 1 1122222 12333333222222345789999999999999999877665555432 112
Q ss_pred CCCCCCCCcccCCCCCCCCccccceEEEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCccccccC
Q 012467 305 PPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKF 384 (463)
Q Consensus 305 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~~~~~~ 384 (463)
+|..+ ....++.++.++.|++|||+|+|.... .||||||||+||||++|.|.|++.++..+
T Consensus 392 p~~~~-------------~~~~~~~v~~~~~~~~VeiViqn~~~~------~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~ 452 (536)
T PLN02792 392 PRRGG-------------GMRLDTSVMGAHHNAFLEIIFQNREKI------VQSYHLDGYNFWVVGINKGIWSRASRREY 452 (536)
T ss_pred CcccC-------------CCccCceEEEcCCCCEEEEEEECCCCC------CCCeeeCCCceEEEeecCCCCCccccccc
Confidence 22110 112346688999999999999997665 89999999999999999999987667789
Q ss_pred CCCCCCccceEEeCCCcEEEEEEEcCCceeeeecccchHhHHccceeee-----eccccccccCCCCCccccCccc
Q 012467 385 NLKNPPLKNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVL-----ALGVETVGNIPNQALACGLTGK 455 (463)
Q Consensus 385 n~~~p~~rDTv~v~~~g~~~irf~adnpG~w~~HCHi~~H~~~GM~~~~-----~~~~~~~~~~P~~~~~C~~~~~ 455 (463)
|+.||++||||.|+++||++|||+|||||+|+||||+..|+..||.++| .++.++++++|++++.||..+.
T Consensus 453 Nl~nP~~RdTv~v~~~gw~aIRf~aDNPGvW~~HCh~~~h~~~Gm~~~~~v~~~~~~~~~~~~pP~~~~~Cg~~~~ 528 (536)
T PLN02792 453 NLKDAISRSTTQVYPESWTAVYVALDNVGMWNLRSQFWARQYLGQQFYLRVYSPTHSLKDEYPLPKNALLCGRASN 528 (536)
T ss_pred CcCCCCccceEEECCCCEEEEEEEeeCCEEEeeeEcchhccccceEEEEEEccCCCccccccCCCcccCccccccC
Confidence 9999999999999999999999999999999999999999999999999 4666788999999999986544
No 8
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=5.6e-81 Score=645.94 Aligned_cols=410 Identities=27% Similarity=0.503 Sum_probs=303.6
Q ss_pred ccccc-ccceeEEEeccchhhhhcceeeEEEEeCCCCCCCCCC-CCcceEEEEeeeecccHHHHHhhhcCCCCCCCCCCC
Q 012467 2 LDVWQ-VQAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFH-YDGEFNLLLSDWWHRSVHEQEVGLSSRPLRWIGEPQ 79 (463)
Q Consensus 2 ~~~~~-~~~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~-~d~e~~l~l~D~~~~~~~~~~~~~~~~~~~~~~~~d 79 (463)
|+|.+ .|+||||||||++.|+++||+|+|||+++++.+.|++ +|+|++|+|+||+++...++...+. .+.. .+.+|
T Consensus 113 Y~F~~~~q~GT~WYHsH~~~Q~~~Gl~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~~-~g~~-~~~~d 190 (552)
T PLN02354 113 YHFQPKDQIGSYFYYPSTGMHRAAGGFGGLRVNSRLLIPVPYADPEDDYTVLIGDWYTKSHTALKKFLD-SGRT-LGRPD 190 (552)
T ss_pred EEEEeCCCCcceEEecCccceecCCccceEEEcCCcCCCCCCCCcCceEEEEeeeeccCCHHHHHHHHh-cCCC-CCCCC
Confidence 78887 4899999999999999999999999999875455653 4789999999999998766543322 2222 45789
Q ss_pred eEEECCCCCCCCccccccCCCCccccccCCCCCCCceEEEecCCCeEEEEEEecCcceEEEEEEeCceeEEEEeCCcccc
Q 012467 80 TLLINGRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQ 159 (463)
Q Consensus 80 ~~liNG~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~ 159 (463)
++||||++...| ....++++|++||+|||||||+|+...+.|+|+||+|+|||+||++++
T Consensus 191 ~~liNG~~~~~~--------------------~~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tVIa~DG~~v~ 250 (552)
T PLN02354 191 GVLINGKSGKGD--------------------GKDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMKLVEMEGSHVL 250 (552)
T ss_pred eEEEeCCcCCCC--------------------CCCceEEEECCCCEEEEEEEecCCCceEEEEECCceEEEEEeCCcccC
Confidence 999999976421 112357999999999999999999999999999999999999999999
Q ss_pred eeeEeeEEecCCceEEEEEecCCCCCCceEEEEEecCCCCCCCCeEEEEEeCCCCCCCCCCCCCCCCCC-CC-CCccccc
Q 012467 160 PFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKPATPPALTLLNYHPTSASKIPLSPPPITPR-WD-DYDHSKS 237 (463)
Q Consensus 160 P~~~~~l~i~~GeR~dvlV~~~~~~~g~y~ir~~~~~~~~~~~~~~a~l~y~~~~~~~~~~~~~p~~p~-~~-~~~~~~~ 237 (463)
|..++.|.|++||||||+|++++ ++|+|||++.....+ ......|+|+|+++.....+ ..|..+. +. .......
T Consensus 251 p~~~~~l~i~~GqRydVlv~a~~-~~g~Y~i~a~~~~~~-~~~~~~ail~Y~g~~~~~~~--~~p~~~~~~~~~~~~~~~ 326 (552)
T PLN02354 251 QNDYDSLDVHVGQCFSVLVTANQ-APKDYYMVASTRFLK-KVLTTTGIIRYEGGKGPASP--ELPEAPVGWAWSLNQFRS 326 (552)
T ss_pred CcceeEEEEccCceEEEEEECCC-CCCcEEEEEeccccC-CCccEEEEEEECCCCCCCCC--CCCCCCcccccchhhhhh
Confidence 99999999999999999999998 568999999753332 34567899999875432111 1221111 00 0000001
Q ss_pred ccccccccCCCCCC-------CCccceEEEEEeeeeccCCeEEEEEecccCCCCCCCCccccccCCC-CCCC----CCCC
Q 012467 238 FSNKIFALMGSPKP-------PTNFHRRLTLLNTQNTINGFTKWAINNVSLTLPPTPYLGSIKYGLK-DAFD----QNGP 305 (463)
Q Consensus 238 ~~~~~~~~~~~~~~-------p~~~d~~~~~~~~~~~~~~~~~~~iNg~~~~~p~~p~l~~~~~~~~-~~~~----~~~~ 305 (463)
....+......+.+ ....++++.+.......++...|+|||.+|..|++|.|.+.+++.. +.+. +..+
T Consensus 327 ~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iNn~s~~~p~~P~L~~~~~~~~~g~~~~~~~~~~p 406 (552)
T PLN02354 327 FRWNLTASAARPNPQGSYHYGKINITRTIKLVNSASKVDGKLRYALNGVSHVDPETPLKLAEYFGVADKVFKYDTIKDNP 406 (552)
T ss_pred hhhcccccccCCCCCCccccccccccceEEEecccccCCceEEEEECCccCCCCCCChHHhhhhcccCCccccCccccCC
Confidence 11111111110100 0123444544433222345678999999999999999887654332 3331 1122
Q ss_pred CCCCCCCcccCCCCCCCCccccceEEEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCccccccCC
Q 012467 306 PENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFN 385 (463)
Q Consensus 306 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~~~~~~n 385 (463)
|..+ .....+..++.++.|++|||+|+|.+.. .||||||||+||||++|.|.|+..++..+|
T Consensus 407 p~~~------------~~~~~~~~v~~~~~~~~VeiVi~n~~~~------~HP~HLHGh~F~Vlg~G~G~~~~~~~~~~n 468 (552)
T PLN02354 407 PAKI------------TKIKIQPNVLNITFRTFVEIIFENHEKS------MQSWHLDGYSFFAVAVEPGTWTPEKRKNYN 468 (552)
T ss_pred cccc------------CccccCCeeEEcCCCCEEEEEEeCCCCC------CCCCcCCCccEEEEeecCCCCCccccccCC
Confidence 2110 0123345688999999999999998765 899999999999999999999876667899
Q ss_pred CCCCCccceEEeCCCcEEEEEEEcCCceeeeecccchHhHHccceeee--eccccc---cccCCCCCccccCccc
Q 012467 386 LKNPPLKNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVL--ALGVET---VGNIPNQALACGLTGK 455 (463)
Q Consensus 386 ~~~p~~rDTv~v~~~g~~~irf~adnpG~w~~HCHi~~H~~~GM~~~~--~~~~~~---~~~~P~~~~~C~~~~~ 455 (463)
+.||++|||+.||++||++|||+|||||+|+|||||..|+..||.+++ .|+++. ++++|+..+.|+..++
T Consensus 469 l~nP~rRDTv~vp~~Gw~vIRF~aDNPGvW~~HCHi~~H~~~g~~l~~~v~~~~~~~~~~~~~P~~~~~C~~~~~ 543 (552)
T PLN02354 469 LLDAVSRHTVQVYPKSWAAILLTFDNAGMWNIRSENWERRYLGQQLYASVLSPERSLRDEYNMPENALLCGKVKG 543 (552)
T ss_pred cCCCCccceEEeCCCCeEEEEEEecCCeEEeeeccccccccccceEEEEEeCCccccCcCCCCCccccccccccC
Confidence 999999999999999999999999999999999999989999988777 355544 4558999999986654
No 9
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=9.7e-81 Score=648.87 Aligned_cols=422 Identities=32% Similarity=0.548 Sum_probs=310.2
Q ss_pred ccccc-ccceeEEEeccchhhhhcceeeEEEEeCCCCCCCCC-CCCcceEEEEeeeecccHHHHHhhhcCCCCCCCCCCC
Q 012467 2 LDVWQ-VQAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPF-HYDGEFNLLLSDWWHRSVHEQEVGLSSRPLRWIGEPQ 79 (463)
Q Consensus 2 ~~~~~-~~~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~-~~d~e~~l~l~D~~~~~~~~~~~~~~~~~~~~~~~~d 79 (463)
|+|.+ .|+||||||||...|+ +||+|+|||+++++.+.|+ .+|+|++|+|+||+++...+++......+.. +.++|
T Consensus 90 Y~f~~~~~~GT~WYHsH~~~~~-~Gl~G~lIV~~~~~~~~~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~~-~~~~d 167 (539)
T TIGR03389 90 YNFTITGQRGTLWWHAHISWLR-ATVYGAIVILPKPGVPYPFPKPDREVPIILGEWWNADVEAVINQANQTGGA-PNVSD 167 (539)
T ss_pred EEEEecCCCeeEEEecCchhhh-ccceEEEEEcCCCCCCCCCCCCCceEEEEecccccCCHHHHHHHHHhcCCC-CCccc
Confidence 78888 4999999999998775 5999999999987644454 3589999999999999887766554443332 45789
Q ss_pred eEEECCCCCCCCccccccCCCCccccccCCCCCCCceEEEecCCCeEEEEEEecCcceEEEEEEeCceeEEEEeCCcccc
Q 012467 80 TLLINGRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQ 159 (463)
Q Consensus 80 ~~liNG~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~ 159 (463)
++||||+.... ..|+ ....++|+|++||+|||||||+|+...+.|+|+||+|+|||+||.+++
T Consensus 168 ~~liNG~~~~~------------~~~~-----~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa~DG~~~~ 230 (539)
T TIGR03389 168 AYTINGHPGPL------------YNCS-----SKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVEVDATYTK 230 (539)
T ss_pred eEEECCCcCCC------------CCCC-----CCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEEeCCcccC
Confidence 99999997530 1232 223458999999999999999999999999999999999999999999
Q ss_pred eeeEeeEEecCCceEEEEEecCCCCCCceEEEEEecCCCC---CCCCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCcccc
Q 012467 160 PFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKP---ATPPALTLLNYHPTSASKIPLSPPPITPRWDDYDHSK 236 (463)
Q Consensus 160 P~~~~~l~i~~GeR~dvlV~~~~~~~g~y~ir~~~~~~~~---~~~~~~a~l~y~~~~~~~~~~~~~p~~p~~~~~~~~~ 236 (463)
|+.+++|.|++||||||+|++++ ++|+||||+.....+. ......|+|+|+++.....+. .+..+.+++.....
T Consensus 231 P~~~~~l~i~~GqRydVlv~a~~-~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~p~--~~~~~~~~~~~~~~ 307 (539)
T TIGR03389 231 PFKTKTIVIGPGQTTNVLLTADQ-SPGRYFMAARPYMDAPGAFDNTTTTAILQYKGTSNSAKPI--LPTLPAYNDTAAAT 307 (539)
T ss_pred ceEeCeEEecCCCEEEEEEECCC-CCceEEEEEeccccCccCCCCcceEEEEEECCCCCCCCCC--CCCCCCCCchhhhh
Confidence 99999999999999999999998 5689999998654432 245689999998754321111 11122222221111
Q ss_pred cccccccccC-C--CCCCCCccceEEEEEeeeec-----------cCCeEEEEEecccCCCCCCCCccccccCCCCCCC-
Q 012467 237 SFSNKIFALM-G--SPKPPTNFHRRLTLLNTQNT-----------INGFTKWAINNVSLTLPPTPYLGSIKYGLKDAFD- 301 (463)
Q Consensus 237 ~~~~~~~~~~-~--~~~~p~~~d~~~~~~~~~~~-----------~~~~~~~~iNg~~~~~p~~p~l~~~~~~~~~~~~- 301 (463)
.....+.... + ....|..+++++.+.+..+. ......|+|||++|..|..|.|.+.+.++.+.+.
T Consensus 308 ~~~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~~ 387 (539)
T TIGR03389 308 NFSNKLRSLNSAQYPANVPVTIDRRLFFTIGLGLDPCPNNTCQGPNGTRFAASMNNISFVMPTTALLQAHYFGISGVFTT 387 (539)
T ss_pred HHHhhcccccccCCCCCCCCCCCeEEEEEeecccccCcccccccCCCcEEEEEECCcccCCCCcchhhhhhcccCCcccc
Confidence 1111122221 1 11233455666655543221 0124689999999999999988666554444221
Q ss_pred --CCCCCCCCCCCcccCCCCCCCCccccceEEEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcc
Q 012467 302 --QNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKE 379 (463)
Q Consensus 302 --~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~ 379 (463)
+..+|..|+ ++....+.+...+.++.++.++.|++|||+|+|.+.+ ....||||||||+||||++|.|.|+..
T Consensus 388 ~~~~~~p~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~---~~~~HP~HLHGh~F~Vlg~g~g~~~~~ 462 (539)
T TIGR03389 388 DFPANPPTKFN--YTGTNLPNNLFTTNGTKVVRLKFNSTVELVLQDTSIL---GSENHPIHLHGYNFFVVGTGFGNFDPK 462 (539)
T ss_pred CCccCCCcccc--CCCCCcccccccccCceEEEecCCCEEEEEEecCCcC---CCCCCcEeEcCCceEEEEeccCCCCcc
Confidence 233444442 1111111111123356789999999999999997532 123899999999999999999999764
Q ss_pred -ccccCCCCCCCccceEEeCCCcEEEEEEEcCCceeeeecccchHhHHccceeeeec-----cccccccCCCCCccc
Q 012467 380 -DEKKFNLKNPPLKNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLAL-----GVETVGNIPNQALAC 450 (463)
Q Consensus 380 -~~~~~n~~~p~~rDTv~v~~~g~~~irf~adnpG~w~~HCHi~~H~~~GM~~~~~~-----~~~~~~~~P~~~~~C 450 (463)
+...+|+.||++|||+.|+++||++|||+|||||+|+|||||+||+..||+++|.+ +.++++++|+.++.|
T Consensus 463 ~~~~~~nl~nP~rRDTv~vp~~g~vvirf~adNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~~~~~~~~~~p~~~~~c 539 (539)
T TIGR03389 463 KDPAKFNLVDPPERNTVGVPTGGWAAIRFVADNPGVWFMHCHLEVHTTWGLKMAFLVDNGKGPNQSLLPPPSDLPSC 539 (539)
T ss_pred cCccccccCCCCeeeeEEcCCCceEEEEEecCCCeEEEEEecccchhhhcceEEEEEccCCCCccccCCCCccCCCC
Confidence 34578999999999999999999999999999999999999999999999999965 446688999999999
No 10
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=8.1e-81 Score=642.00 Aligned_cols=399 Identities=29% Similarity=0.514 Sum_probs=297.5
Q ss_pred cccccc-cceeEEEeccchhhhhcceeeEEEEeCCCCCCCCC-CCCcceEEEEeeeecccHHHHHhhhcCCCCCCCCCCC
Q 012467 2 LDVWQV-QAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPF-HYDGEFNLLLSDWWHRSVHEQEVGLSSRPLRWIGEPQ 79 (463)
Q Consensus 2 ~~~~~~-~~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~-~~d~e~~l~l~D~~~~~~~~~~~~~~~~~~~~~~~~d 79 (463)
|+|.+. |+||||||||.+.|+.+||+|+|||+++++.+.|+ .+|+|++|+|+||++.+...+...+.. +.. .+++|
T Consensus 112 Y~F~~~~q~GT~WYHsH~~~Q~~~GL~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~-g~~-~~~~d 189 (545)
T PLN02168 112 YRFQVKDQIGSYFYFPSLLLQKAAGGYGAIRIYNPELVPVPFPKPDEEYDILIGDWFYADHTVMRASLDN-GHS-LPNPD 189 (545)
T ss_pred EEEEeCCCCceEEEecChhhhhhCcceeEEEEcCCcccCcCcCcccceeeEEEEecCCCCHHHHHhhhhc-CCC-CCCCC
Confidence 788884 89999999999999999999999999987655554 468999999999999876554332322 222 35789
Q ss_pred eEEECCCCCCCCccccccCCCCccccccCCCCCCCceEEEecCCCeEEEEEEecCcceEEEEEEeCceeEEEEeCCcccc
Q 012467 80 TLLINGRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQ 159 (463)
Q Consensus 80 ~~liNG~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~ 159 (463)
++||||++.. .++++|++||+|||||||+|+.+.+.|+|+||+|+|||+||.+++
T Consensus 190 ~~liNG~~~~-------------------------~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa~DG~~v~ 244 (545)
T PLN02168 190 GILFNGRGPE-------------------------ETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVETEGTYVQ 244 (545)
T ss_pred EEEEeccCCC-------------------------cceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEEEECCeECC
Confidence 9999999853 137999999999999999999999999999999999999999999
Q ss_pred eeeEeeEEecCCceEEEEEecCCCCCC---ceEEEEEecCCCCCCCCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCcccc
Q 012467 160 PFEVDDMDIYSGESYSVLLTTNQDPSY---NYWISAGVRGRKPATPPALTLLNYHPTSASKIPLSPPPITPRWDDYDHSK 236 (463)
Q Consensus 160 P~~~~~l~i~~GeR~dvlV~~~~~~~g---~y~ir~~~~~~~~~~~~~~a~l~y~~~~~~~~~~~~~p~~p~~~~~~~~~ 236 (463)
|..++.|.|++||||||+|++++...| +||||+.....+ ....+.|+|+|+++.... ..+.|..|.+.+...+.
T Consensus 245 p~~~~~l~i~~GqRydvlv~a~~~~~g~~~~Y~i~a~~~~~~-~~~~~~ail~Y~~~~~~~--~~p~p~~p~~~~~~~~~ 321 (545)
T PLN02168 245 KRVYSSLDIHVGQSYSVLVTAKTDPVGIYRSYYIVATARFTD-AYLGGVALIRYPNSPLDP--VGPLPLAPALHDYFSSV 321 (545)
T ss_pred CceeeEEEEcCCceEEEEEEcCCCCCCCcceEEEEEEecccC-CCcceEEEEEECCCCCCC--CCCCCCCCccccccccc
Confidence 999999999999999999999864433 899999875433 346788999998654321 11233333333332222
Q ss_pred ccccc----ccccCCCCCCCC--------ccceEEEEEeeeeccCCeEEEEEecccCCCCCCCCccccccCCCCCCC---
Q 012467 237 SFSNK----IFALMGSPKPPT--------NFHRRLTLLNTQNTINGFTKWAINNVSLTLPPTPYLGSIKYGLKDAFD--- 301 (463)
Q Consensus 237 ~~~~~----~~~~~~~~~~p~--------~~d~~~~~~~~~~~~~~~~~~~iNg~~~~~p~~p~l~~~~~~~~~~~~--- 301 (463)
..... +..... ...|. ..++++.+.......++...|+|||.+|..|++|.|.+.+++.++.+.
T Consensus 322 ~~~~~~~~~l~p~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~ 400 (545)
T PLN02168 322 EQALSIRMDLNVGAA-RSNPQGSYHYGRINVTRTIILHNDVMLSSGKLRYTINGVSFVYPGTPLKLVDHFQLNDTIIPGM 400 (545)
T ss_pred chhhhhhhcCCCCCC-CCCCcccccccccccceeEEecccccccCceEEEEECCCccCCCCCchhhhhhcccccccccCC
Confidence 22111 111111 11111 123333333211112355789999999999999998766554332221
Q ss_pred -CCCCCCCCCCCcccCCCCCCCCccccceEEEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCccc
Q 012467 302 -QNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKED 380 (463)
Q Consensus 302 -~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~~ 380 (463)
+..+| +.....++.++.++.|++|+|+|+|.... .||||||||+||||++|.|.|+..+
T Consensus 401 ~~~~p~--------------~~~~~~~~~v~~~~~~~~VeiViqn~~~~------~HP~HLHGh~F~Vvg~g~g~~~~~~ 460 (545)
T PLN02168 401 FPVYPS--------------NKTPTLGTSVVDIHYKDFYHIVFQNPLFS------LESYHIDGYNFFVVGYGFGAWSESK 460 (545)
T ss_pred CccCCC--------------cCccccCceEEEecCCCEEEEEEeCCCCC------CCCeeeCCCceEEEECCCCCCCccc
Confidence 11111 11112235678999999999999998655 8999999999999999999998665
Q ss_pred cccCCCCCCCccceEEeCCCcEEEEEEEcCCceeeeecccchHhHHccceeeeec-----------cccccccCCCCCcc
Q 012467 381 EKKFNLKNPPLKNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLAL-----------GVETVGNIPNQALA 449 (463)
Q Consensus 381 ~~~~n~~~p~~rDTv~v~~~g~~~irf~adnpG~w~~HCHi~~H~~~GM~~~~~~-----------~~~~~~~~P~~~~~ 449 (463)
+..+|+.||++|||+.|+++||++|||+|||||+|+|||||++|+..||.+.+.+ ..++++++|+.++.
T Consensus 461 ~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDNPG~Wl~HCHi~~~~h~g~gl~~~v~~~~~e~p~~~~~~~~~~~P~~~~~ 540 (545)
T PLN02168 461 KAGYNLVDAVSRSTVQVYPYSWTAILIAMDNQGMWNVRSQKAEQWYLGQELYMRVKGEGEEDPSTIPVRDENPIPGNVIR 540 (545)
T ss_pred cccCCCCCCCccceEEeCCCCEEEEEEEccCCeEEeeeecCcccceecCcEEEEEEcccccCccccccccccCCChhhcc
Confidence 5679999999999999999999999999999999999999977777776666633 13456779999999
Q ss_pred cc
Q 012467 450 CG 451 (463)
Q Consensus 450 C~ 451 (463)
||
T Consensus 541 cg 542 (545)
T PLN02168 541 CG 542 (545)
T ss_pred cc
Confidence 97
No 11
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=1.6e-75 Score=607.39 Aligned_cols=407 Identities=31% Similarity=0.582 Sum_probs=294.0
Q ss_pred ccccc--ccceeEEEeccchhhhhcceeeEEEEeCCCCCCCCCCCCcceEEEEeeeecccHHHHHhhhcCCCCCCCCCCC
Q 012467 2 LDVWQ--VQAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFHYDGEFNLLLSDWWHRSVHEQEVGLSSRPLRWIGEPQ 79 (463)
Q Consensus 2 ~~~~~--~~~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~d~e~~l~l~D~~~~~~~~~~~~~~~~~~~~~~~~d 79 (463)
|+|.+ .|+||||||||.+.|+. ||+|+|||+++++ .++.||+|++|+|+||+++...++...+......+..+++
T Consensus 96 Y~f~~~~~q~GT~WYHsH~~~Q~~-~l~G~lIV~~~~~--~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d 172 (538)
T TIGR03390 96 YEIKPEPGDAGSYFYHSHVGFQAV-TAFGPLIVEDCEP--PPYKYDDERILLVSDFFSATDEEIEQGLLSTPFTWSGETE 172 (538)
T ss_pred EEEEecCCCCeeeEEecCCchhhh-cceeEEEEccCCc--cCCCccCcEEEEEeCCCCCCHHHHHhhhhccCCccCCCCc
Confidence 67775 48999999999999987 5999999998753 4678899999999999999888766555443333345789
Q ss_pred eEEECCCCCCCCccccccCCCCccccccCCCCCCCceEEEecCCCeEEEEEEecCcceEEEEEEeCce-eEEEEeCCccc
Q 012467 80 TLLINGRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHK-MVVVEADGNYV 158 (463)
Q Consensus 80 ~~liNG~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~-~~via~DG~~v 158 (463)
++||||++.+.|... .+ +....|..++++|++||+|||||||+|+.+.+.|+|++|+ |+|||+||+++
T Consensus 173 ~~liNG~~~~~~~~~---------~~--~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa~DG~~~ 241 (538)
T TIGR03390 173 AVLLNGKSGNKSFYA---------QI--NPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIEADGSYT 241 (538)
T ss_pred eEEECCccccccccc---------cc--cCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEEeCCCCC
Confidence 999999987644210 01 1122345678999999999999999999999999999999 99999999999
Q ss_pred ceeeEeeEEecCCceEEEEEecCCCC------CCceEEEEEecCCCCCCCCeEEEEEeCCCCCCCCCCCCCCCCCCCCCC
Q 012467 159 QPFEVDDMDIYSGESYSVLLTTNQDP------SYNYWISAGVRGRKPATPPALTLLNYHPTSASKIPLSPPPITPRWDDY 232 (463)
Q Consensus 159 ~P~~~~~l~i~~GeR~dvlV~~~~~~------~g~y~ir~~~~~~~~~~~~~~a~l~y~~~~~~~~~~~~~p~~p~~~~~ 232 (463)
+|+.++.|.|++||||||+|++++.. +++||||+.....+ +.....|||+|+++.....+. .|..+.....
T Consensus 242 ~P~~v~~l~l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~-~~~~~~aiL~Y~~~~~~~~~~--~p~~~~~~~~ 318 (538)
T TIGR03390 242 KPAKIDHLQLGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRP-KVYRGYAVLRYRSDKASKLPS--VPETPPLPLP 318 (538)
T ss_pred CceEeCeEEEccCCEEEEEEECCCccccccCCCCcEEEEEeecCCC-CcceEEEEEEeCCCCCCCCCC--CCCCCCCCcc
Confidence 99999999999999999999999742 48999999765443 345678999998643322111 1111111100
Q ss_pred c-ccccccccccccCC----CCCCCCccceEEEEEeeeec--cCCeEEEEEecccCCC--CCCCCccccccCCCCCCCCC
Q 012467 233 D-HSKSFSNKIFALMG----SPKPPTNFHRRLTLLNTQNT--INGFTKWAINNVSLTL--PPTPYLGSIKYGLKDAFDQN 303 (463)
Q Consensus 233 ~-~~~~~~~~~~~~~~----~~~~p~~~d~~~~~~~~~~~--~~~~~~~~iNg~~~~~--p~~p~l~~~~~~~~~~~~~~ 303 (463)
. ........+..... ..+++..+++++.+.+.+.. .++...|+|||.+|.. |.+|+|.....+... .
T Consensus 319 ~~~~~~~~~~l~pl~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~g~~~~~~N~~s~~~~~~~~P~L~~~~~~~~~----~ 394 (538)
T TIGR03390 319 NSTYDWLEYELEPLSEENNQDFPTLDEVTRRVVIDAHQNVDPLNGRVAWLQNGLSWTESVRQTPYLVDIYENGLP----A 394 (538)
T ss_pred CcchhhhheeeEecCccccCCCCCCCcCceEEEEEccccccccCCeEEEEECCcccCCCCCCCchHHHHhcCCCC----c
Confidence 0 00000112222111 01223456788877776532 2456789999999986 788988766532110 0
Q ss_pred CCCCCCCCCcccCCCCCCCCccccceEEEccCCCEEEEEEEeCCCCC--CCCCCCCCeeecCCceEEEeecCCCCCcc-c
Q 012467 304 GPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIR--PNLSEIHPWHLHGHDFWVLGRGEGKFTKE-D 380 (463)
Q Consensus 304 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~vl~N~~~~~--~~~~~~HP~HlHG~~f~vl~~g~g~~~~~-~ 380 (463)
.++ | +. ... ......++.++.++.|++|||+|+|.+... ......||||||||+||||++|.|.|++. +
T Consensus 395 ~~~--~----~~-~~~-~~~~~~~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~~~~~~~ 466 (538)
T TIGR03390 395 TPN--Y----TA-ALA-NYGFDPETRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGEYNATAN 466 (538)
T ss_pred CCC--c----cc-ccc-cCCcCcCceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEcccccccCCccC
Confidence 000 1 00 000 000112344688999999999999974210 00123899999999999999999999865 3
Q ss_pred cccCCCCCCCccceEEeC----------CCcEEEEEEEcCCceeeeecccchHhHHccceeeeeccc
Q 012467 381 EKKFNLKNPPLKNTAVIF----------PYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGV 437 (463)
Q Consensus 381 ~~~~n~~~p~~rDTv~v~----------~~g~~~irf~adnpG~w~~HCHi~~H~~~GM~~~~~~~~ 437 (463)
+..+|+.||++|||+.|+ +++|++|||++||||+|+|||||+||+.+||+++|.+..
T Consensus 467 ~~~~nl~nP~rRDTv~vp~~~~~~~~~~~~~~~~ir~~~dNPG~W~~HCHi~~H~~~Gm~~~~~~~~ 533 (538)
T TIGR03390 467 EAKLENYTPVLRDTTMLYRYAVKVVPGAPAGWRAWRIRVTNPGVWMMHCHILQHMVMGMQTVWVFGD 533 (538)
T ss_pred hhhhccCCCCeecceeeccccccccccCCCceEEEEEEcCCCeeEEEeccchhhhhccceEEEEeCC
Confidence 456888999999999996 789999999999999999999999999999999997653
No 12
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.9e-75 Score=595.14 Aligned_cols=420 Identities=35% Similarity=0.586 Sum_probs=327.3
Q ss_pred cccccc-cceeEEEeccchhhhhcceeeEEEEeCCCCCCCCCC-CCcceEEEEeeeecc-cHHHHHhhhcCCCCCCCCCC
Q 012467 2 LDVWQV-QAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFH-YDGEFNLLLSDWWHR-SVHEQEVGLSSRPLRWIGEP 78 (463)
Q Consensus 2 ~~~~~~-~~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~-~d~e~~l~l~D~~~~-~~~~~~~~~~~~~~~~~~~~ 78 (463)
|+|.+. |.||||||||++.|+++|++|+|||.++...+.|+. +|+|++|+|+||+++ ...++...+...+. .+..+
T Consensus 114 Y~F~v~~q~GT~~yh~h~~~~Ra~G~~G~liI~~~~~~p~pf~~pd~E~~ill~dW~~~~~~~~l~~~~~~~~~-~p~~~ 192 (563)
T KOG1263|consen 114 YRFTVKDQIGTLWYHSHVSWQRATGVFGALIINPRPGLPVPFPKPDKEFTILLGDWYKNLNHKNLKNFLDRTGA-LPNPS 192 (563)
T ss_pred EEEEeCCcceeEEEeeccccccccCceeEEEEcCCccCCCCCCCCCceeEEEeEeeccccCHHHHHHhhccCCC-CCCCC
Confidence 778888 999999999999999999999999999987666776 599999999999996 65555544444443 25559
Q ss_pred CeEEECCCCCCCCccccccCCCCccccccCCCCCCCceEEEecCCCeEEEEEEecCcceEEEEEEeCceeEEEEeCCccc
Q 012467 79 QTLLINGRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYV 158 (463)
Q Consensus 79 d~~liNG~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v 158 (463)
|..+|||+.++ + | .| .++++|++||+|||||||+|....+.|+|++|+|+||++||.++
T Consensus 193 D~~~iNg~~g~---~---~------~~---------~~~l~v~pGktY~lRiiN~g~~~~l~F~I~~H~ltvVe~Dg~y~ 251 (563)
T KOG1263|consen 193 DGVLINGRSGF---L---Y------NC---------TPTLTVEPGKTYRLRIINAGLNTSLNFSIANHQLTVVEVDGAYT 251 (563)
T ss_pred CceEECCCCCc---c---c------Cc---------eeEEEEcCCCEEEEEEEccccccceEEEECCeEEEEEEecceEE
Confidence 99999999865 1 1 22 35899999999999999999999999999999999999999999
Q ss_pred ceeeEeeEEecCCceEEEEEecCCCCCCceEEEEEecCCCC---CCCCeEEEEEeCCCCCCCCCC-CCCCCCCCCCCCcc
Q 012467 159 QPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKP---ATPPALTLLNYHPTSASKIPL-SPPPITPRWDDYDH 234 (463)
Q Consensus 159 ~P~~~~~l~i~~GeR~dvlV~~~~~~~g~y~ir~~~~~~~~---~~~~~~a~l~y~~~~~~~~~~-~~~p~~p~~~~~~~ 234 (463)
+|..+++|.|+|||||||+|++++. +++|+|++.....+. ......|+|+|.+........ ...+..|...+...
T Consensus 252 ~p~~~~~l~i~~GQ~~~vLvtadq~-~~~Y~i~~~~~~~~~~~~~~~t~~~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~ 330 (563)
T KOG1263|consen 252 KPFTTDSLDIHPGQTYSVLLTADQS-PGDYYIAASPYFDASNVPFNLTTTGILRYSGSTHPASEKLPIYPFLPPGNDTAW 330 (563)
T ss_pred eeeeeceEEEcCCcEEEEEEeCCCC-CCcEEEEEEeeeccCCcceeeeEEEEEEEeCCcccCcccCcccccCCcccCchh
Confidence 9999999999999999999999994 569999998866542 156778999998622211111 11223344444444
Q ss_pred cccccccccccCC---CCCCCCccceEEEEEeee--------eccCCeEEEEEecccCCCCCCCCccccccCCCC-CCC-
Q 012467 235 SKSFSNKIFALMG---SPKPPTNFHRRLTLLNTQ--------NTINGFTKWAINNVSLTLPPTPYLGSIKYGLKD-AFD- 301 (463)
Q Consensus 235 ~~~~~~~~~~~~~---~~~~p~~~d~~~~~~~~~--------~~~~~~~~~~iNg~~~~~p~~p~l~~~~~~~~~-~~~- 301 (463)
+..+...++.... ..+.|++.++...+..+. ...++...++||+.+|..|++|.+.+.++...+ .+.
T Consensus 331 s~~~~~~~r~~~~~~~~~~~P~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~siN~isf~~P~tp~~l~~~~~~~~~~~~~ 410 (563)
T KOG1263|consen 331 STYQARSIRSLLSASFARPVPQGSYHYGLITIGLTLKLCNSDNKNNGKLRASINNISFVTPKTPSLLAAYFKNIPGYFTN 410 (563)
T ss_pred hhhhhhcccccccccCcccCCCccccccceeeeccEEeccCCCCCCcEEEEEEcceEEECCCCchhhhhhhccCCccccC
Confidence 5555555555432 234455555554433322 123567899999999999999888766644333 221
Q ss_pred --CCCCCCCCCCCcccCCCCCCCCccccceEEEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcc
Q 012467 302 --QNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKE 379 (463)
Q Consensus 302 --~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~ 379 (463)
+..||..+ ++. .++.+++++.++.++.||++|+|.+.. ..+.||||||||.|+|++.|.|.|++.
T Consensus 411 d~p~~P~~~~--~~~--------~~~~~t~v~~~~~~~~veIVlqN~~~~---~~~~hp~HLHG~~F~Vvg~g~G~~~~~ 477 (563)
T KOG1263|consen 411 DFPDKPPIKF--DYT--------GPTLGTSVMKLEFNSFVEIVLQNTSTG---TQENHPNHLHGYNFYVVGYGFGNWDPA 477 (563)
T ss_pred ccCCCCcccc--CCc--------cccccceEEEeecCCEEEEEEeCCccc---cCCCCccceeceEEEEEEecccccCcC
Confidence 23333222 211 136788899999999999999998765 334799999999999999999999984
Q ss_pred -cc-ccCCCCCCCccceEEeCCCcEEEEEEEcCCceeeeecccchHhHHccceeeeecccccc-----ccCCCCCccccC
Q 012467 380 -DE-KKFNLKNPPLKNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGVETV-----GNIPNQALACGL 452 (463)
Q Consensus 380 -~~-~~~n~~~p~~rDTv~v~~~g~~~irf~adnpG~w~~HCHi~~H~~~GM~~~~~~~~~~~-----~~~P~~~~~C~~ 452 (463)
++ ..+|+.+|+.||||.|+||||++|||.|||||+|+||||+++|+..||.++|.+..+.. .++|++.+.||.
T Consensus 478 ~d~~~~yNl~dp~~R~Tv~V~pggw~aIrf~adNPG~W~~HCHie~H~~~G~~~~f~V~~~~~~~~~~~~~P~~~~~cg~ 557 (563)
T KOG1263|consen 478 KDPRKKYNLVDPVSRDTVQVPPGGWTAIRFVADNPGVWLMHCHIEDHLYLGMETVFIVGNGEESLSSEYPPPKNLPKCGR 557 (563)
T ss_pred cChhhhcccCCCcccceEEeCCCCEEEEEEEcCCCcEEEEEEecHHHHhccCeEEEEEeCCCccCCcCCCCCCCcccccc
Confidence 34 78999999999999999999999999999999999999999999999999997765443 469999999998
Q ss_pred cccCC
Q 012467 453 TGKRF 457 (463)
Q Consensus 453 ~~~~~ 457 (463)
-+...
T Consensus 558 ~~~~~ 562 (563)
T KOG1263|consen 558 ASGIP 562 (563)
T ss_pred cCCcC
Confidence 77643
No 13
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=6.7e-62 Score=504.93 Aligned_cols=337 Identities=29% Similarity=0.434 Sum_probs=246.8
Q ss_pred cccccccceeEEEeccchhhhhcceeeEEEEeCCCCCCCCCCCCcceEEEEeeeecccHHHHHhhhcCCCCC--------
Q 012467 2 LDVWQVQAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFHYDGEFNLLLSDWWHRSVHEQEVGLSSRPLR-------- 73 (463)
Q Consensus 2 ~~~~~~~~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~d~e~~l~l~D~~~~~~~~~~~~~~~~~~~-------- 73 (463)
|+|.+.|+||||||||.+.|+.+||+|+|||+++++ .|+.||+|++|+|+||+++...+++..+......
T Consensus 130 Y~f~~~~~GTyWYHsH~~~q~~~GL~G~lIV~~~~~--~p~~~D~E~vl~L~Dw~~~~p~~i~~~l~~~~~~~~~~~~~~ 207 (587)
T TIGR01480 130 YRFPVRQSGTYWYHSHSGFQEQAGLYGPLIIDPAEP--DPVRADREHVVLLSDWTDLDPAALFRKLKVMAGHDNYYKRTV 207 (587)
T ss_pred EEEECCCCeeEEEecCchhHhhccceEEEEECCCcc--ccCCCCceEEEEeeecccCCHHHHHHhhhcccccccccccch
Confidence 788999999999999999999999999999998643 4778999999999999998877765443311000
Q ss_pred ---------------------CC-------------CCCCeEEECCCCCCCCccccccCCCCccccccCCCCCCCceEEE
Q 012467 74 ---------------------WI-------------GEPQTLLINGRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILH 119 (463)
Q Consensus 74 ---------------------~~-------------~~~d~~liNG~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~ 119 (463)
|. +....+|+||+.. ..++++.
T Consensus 208 ~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~d~~dv~G~~~~~LiNG~~~------------------------~~~~~~~ 263 (587)
T TIGR01480 208 ADFFRDVRNDGLKQTLADRKMWGQMRMTPTDLADVNGSTYTYLMNGTTP------------------------AGNWTGL 263 (587)
T ss_pred hhhhhhhccccccccccccccccccccCCcccccccCccceEEEcCccC------------------------CCCceEE
Confidence 00 0011244555532 1234689
Q ss_pred ecCCCeEEEEEEecCcceEEEEEEeCceeEEEEeCCcccceeeEeeEEecCCceEEEEEecCCCCCCceEEEEEecCCCC
Q 012467 120 VQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKP 199 (463)
Q Consensus 120 v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~P~~~~~l~i~~GeR~dvlV~~~~~~~g~y~ir~~~~~~~~ 199 (463)
+++|++|||||||+|+.+.++|+|+||+|+|||+||++|+|+.++.|.|++||||||+|++++ .|.|+|++...++
T Consensus 264 v~~G~rvRLR~INas~~~~f~l~I~gh~m~VIa~DG~~v~Pv~vd~l~I~pGeRyDVlV~~~~--~g~~~i~a~~~~~-- 339 (587)
T TIGR01480 264 FRPGEKVRLRFINGSAMTYFDVRIPGLKLTVVAVDGQYVHPVSVDEFRIAPAETFDVIVEPTG--DDAFTIFAQDSDR-- 339 (587)
T ss_pred ECCCCEEEEEEEecCCCceEEEEECCCEEEEEEcCCcCcCceEeCeEEEcCcceeEEEEecCC--CceEEEEEEecCC--
Confidence 999999999999999999999999999999999999999999999999999999999999875 4789999976543
Q ss_pred CCCCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCcc----------------------c--------cc---c--------
Q 012467 200 ATPPALTLLNYHPTSASKIPLSPPPITPRWDDYDH----------------------S--------KS---F-------- 238 (463)
Q Consensus 200 ~~~~~~a~l~y~~~~~~~~~~~~~p~~p~~~~~~~----------------------~--------~~---~-------- 238 (463)
....+++|++.+......++...+......++.. . .. .
T Consensus 340 -~~~~~~~l~~~~~~~~~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (587)
T TIGR01480 340 -TGYARGTLAVRLGLTAPVPALDPRPLLTMKDMGMGGMHHGMDHSKMSMGGMPGMDMSMRAQSNAPMDHSQMAMDASPKH 418 (587)
T ss_pred -CceEEEEEecCCCCCCCCCCCCCccccChhhcccccccccccccccccCcccccCccccccccccCccccccccccccC
Confidence 3467888988643211111111100000000000 0 00 0
Q ss_pred -------------------------------c------ccccccCCCCCCCCccceEEEEEeeeeccCCeEEEEEecccC
Q 012467 239 -------------------------------S------NKIFALMGSPKPPTNFHRRLTLLNTQNTINGFTKWAINNVSL 281 (463)
Q Consensus 239 -------------------------------~------~~~~~~~~~~~~p~~~d~~~~~~~~~~~~~~~~~~~iNg~~~ 281 (463)
. ..|.+..+ ...+..+++++.+.+..+. ....|+|||..|
T Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~~~~-~~~~~~p~r~~~~~L~g~m--~~~~wtiNG~~~ 495 (587)
T TIGR01480 419 PASEPLNPLVDMIVDMPMDRMDDPGIGLRDNGRRVLTYADLHSLFP-PPDGRAPGREIELHLTGNM--ERFAWSFDGEAF 495 (587)
T ss_pred cccccCCccccccccCcccccCCCCcccccCCcceeehhhcccccc-ccCcCCCCceEEEEEcCCC--ceeEEEECCccC
Confidence 0 00111110 1122346777776664331 346799999876
Q ss_pred CCCCCCCccccccCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccceEEEccCCCEEEEEEEeCCCCCCCCCCCCCeee
Q 012467 282 TLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHL 361 (463)
Q Consensus 282 ~~p~~p~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~Hl 361 (463)
.. .+| +.++.|++|+|+|.|.+.+ .|||||
T Consensus 496 ~~--------------------~~p------------------------l~v~~Gervri~l~N~t~~------~HpmHl 525 (587)
T TIGR01480 496 GL--------------------KTP------------------------LRFNYGERLRVVLVNDTMM------AHPIHL 525 (587)
T ss_pred CC--------------------CCc------------------------eEecCCCEEEEEEECCCCC------CcceeE
Confidence 31 011 6799999999999999887 999999
Q ss_pred cCCceEEEeecCCCCCccccccCCCCCCCccceEEeCCCcEEEEEEEcCCceeeeecccchHhHHccceeeeec
Q 012467 362 HGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLAL 435 (463)
Q Consensus 362 HG~~f~vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~adnpG~w~~HCHi~~H~~~GM~~~~~~ 435 (463)
|||.|+++.. +|.+ ++++||+.|+||+++.++|+++|||.|+||||++.|++.||+..|.+
T Consensus 526 HG~~f~v~~~-~G~~------------~~~~dTv~V~Pg~t~~~~f~ad~pG~w~~HCH~l~H~~~GM~~~~~v 586 (587)
T TIGR01480 526 HGMWSELEDG-QGEF------------QVRKHTVDVPPGGKRSFRVTADALGRWAYHCHMLLHMEAGMFREVTV 586 (587)
T ss_pred cCceeeeecC-CCcc------------cccCCceeeCCCCEEEEEEECCCCeEEEEcCCCHHHHhCcCcEEEEe
Confidence 9999999865 3443 36899999999999999999999999999999999999999999865
No 14
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=9.9e-58 Score=470.51 Aligned_cols=329 Identities=22% Similarity=0.286 Sum_probs=221.9
Q ss_pred ccccccc-ceeEEEecc----chhhhhcceeeEEEEeCCCCCC--CCCCCC-cceEEEEeeeecccHHHHHhhhcCCCCC
Q 012467 2 LDVWQVQ-AGTYFYHGH----LGMQRSAGLYGSLIVDVADGEK--EPFHYD-GEFNLLLSDWWHRSVHEQEVGLSSRPLR 73 (463)
Q Consensus 2 ~~~~~~~-~GT~WYHsH----~~~q~~~Gl~G~lIV~~~~~~~--~p~~~d-~e~~l~l~D~~~~~~~~~~~~~~~~~~~ 73 (463)
|+|.+.| +|||||||| ++.|+++||+|+|||+++++.+ .|..|+ +|++|+|+||+++..+++..........
T Consensus 128 Y~f~~~q~aGT~WYH~H~~g~t~~Qv~~GL~G~lIV~d~~~~~~~lp~~~~~~d~~lvlqD~~~~~~g~~~~~~~~~~~~ 207 (523)
T PRK10965 128 VTFTVDQPAATCWFHPHQHGKTGRQVAMGLAGLVLIEDDESLKLGLPKQWGVDDIPVILQDKRFSADGQIDYQLDVMTAA 207 (523)
T ss_pred EEeccCCCCceEEEecCCCCCcHHHHhCcCeEEEEEcCccccccCCcccCCCceeeEEEEeeeeCCCCceeccccccccc
Confidence 6788875 899999999 5999999999999999987643 233453 6999999999998766543221110000
Q ss_pred CCCCCCeEEECCCCCCCCccccccCCCCccccccCCCCCCCceEEEecCCCeEEEEEEecCcceEEEEEE-eCceeEEEE
Q 012467 74 WIGEPQTLLINGRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAV-KNHKMVVVE 152 (463)
Q Consensus 74 ~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~i-~~h~~~via 152 (463)
....+|.+||||+..+ .+.++ +++|||||||+|+.+.++|++ ++|+|+|||
T Consensus 208 ~g~~gd~~lVNG~~~p---------------------------~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vIa 259 (523)
T PRK10965 208 VGWFGDTLLTNGAIYP---------------------------QHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVIA 259 (523)
T ss_pred cCccCCeEEECCcccc---------------------------eeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEEE
Confidence 0236799999999764 46664 679999999999999999998 899999999
Q ss_pred eCCccc-ceeeEeeEEecCCceEEEEEecCCCCCCceEEEEEecCCCC----CCCCeEEEEEeCCCCCCCCCCCCCCCCC
Q 012467 153 ADGNYV-QPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKP----ATPPALTLLNYHPTSASKIPLSPPPITP 227 (463)
Q Consensus 153 ~DG~~v-~P~~~~~l~i~~GeR~dvlV~~~~~~~g~y~ir~~~~~~~~----~~~~~~a~l~y~~~~~~~~~~~~~p~~p 227 (463)
.||+++ +|..++.|.|+|||||||+|++++ .++|++.+....... .....+.++++...... ...+.|..
T Consensus 260 ~DG~~l~~P~~v~~l~lapGeR~dvlv~~~~--~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~P~~- 334 (523)
T PRK10965 260 SDGGLLAEPVKVSELPILMGERFEVLVDTSD--GKAFDLVTLPVSQMGMALAPFDKPLPVLRIQPLLIS--ASGTLPDS- 334 (523)
T ss_pred eCCCcccCccEeCeEEECccceEEEEEEcCC--CceEEEEEecccCcccccccCCCceeEEEEeccCcC--CCCcCChh-
Confidence 999986 899999999999999999999986 478999876432211 01113445555422111 11111110
Q ss_pred CCCCCcccccccccccccCCCCCCCCccceEEEEEeeee-----------ccC---------------------------
Q 012467 228 RWDDYDHSKSFSNKIFALMGSPKPPTNFHRRLTLLNTQN-----------TIN--------------------------- 269 (463)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~-----------~~~--------------------------- 269 (463)
+....+.+.......+++.+.+... ..+
T Consensus 335 --------------l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (523)
T PRK10965 335 --------------LASLPALPSLEGLTVRRLQLSMDPRLDMMGMQMLMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHG 400 (523)
T ss_pred --------------hccCCCCCcccccceeEEEEeeccccchhhhhhccccccccccccccccccccccccccccccccc
Confidence 0000000000001122332222100 000
Q ss_pred ----Ce-----EEEEEecccCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccceEEEccCCCEEE
Q 012467 270 ----GF-----TKWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVD 340 (463)
Q Consensus 270 ----~~-----~~~~iNg~~~~~p~~p~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~ 340 (463)
+. ..|+|||.+|.. .+ ..+.++.|++++
T Consensus 401 ~~~~~~~~~~~~~~~ING~~~~~-------------------~~------------------------~~~~~~~G~~e~ 437 (523)
T PRK10965 401 AADAGPAFDFHHANKINGKAFDM-------------------NK------------------------PMFAAKKGQYER 437 (523)
T ss_pred cccccccccccccccCCCeECCC-------------------CC------------------------cceecCCCCEEE
Confidence 00 013455554421 11 126799999999
Q ss_pred EEEEeCCC-CCCCCCCCCCeeecCCceEEEeecCCCCCccccccCCCCCCCccceEEeCCCcEEEEEEE----cCCceee
Q 012467 341 VILQNANA-IRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFV----ADNPGAW 415 (463)
Q Consensus 341 ~vl~N~~~-~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~----adnpG~w 415 (463)
|+|.|.+. + .|||||||++|+||+++..... ...+.|||||.|++ +.+.|+++ ++++|.|
T Consensus 438 w~i~N~~~~~------~Hp~HlHg~~F~Vl~~~g~~~~--------~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g~~ 502 (523)
T PRK10965 438 WVISGVGDMM------LHPFHIHGTQFRILSENGKPPA--------AHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEHAY 502 (523)
T ss_pred EEEEeCCCCC------ccCeEEeCcEEEEEEecCCCCC--------ccccccccEEEECC-cEEEEEEEecCCCCCCCCE
Confidence 99999874 4 8999999999999999532211 12357999999987 55655544 3568899
Q ss_pred eecccchHhHHccceeeeec
Q 012467 416 AFHCHIEPHFHIGMGVVLAL 435 (463)
Q Consensus 416 ~~HCHi~~H~~~GM~~~~~~ 435 (463)
||||||++|+|.|||..|.+
T Consensus 503 ~~HCHiL~Hed~GMM~~~~V 522 (523)
T PRK10965 503 MAHCHLLEHEDTGMMLGFTV 522 (523)
T ss_pred EEEeCchhhhccCccceeEe
Confidence 99999999999999999865
No 15
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=2e-57 Score=464.34 Aligned_cols=318 Identities=17% Similarity=0.172 Sum_probs=219.8
Q ss_pred cccccc-cceeEEEecc----chhhhhcceeeEEEEeCCCCCCCC--CCCC-cceEEEEeeeecccHHHHHhhhcCCCCC
Q 012467 2 LDVWQV-QAGTYFYHGH----LGMQRSAGLYGSLIVDVADGEKEP--FHYD-GEFNLLLSDWWHRSVHEQEVGLSSRPLR 73 (463)
Q Consensus 2 ~~~~~~-~~GT~WYHsH----~~~q~~~Gl~G~lIV~~~~~~~~p--~~~d-~e~~l~l~D~~~~~~~~~~~~~~~~~~~ 73 (463)
|+|... ++|||||||| ++.|+++||+|+|||+++.+.+.+ ..|+ .|++|+|+||+++...+.........
T Consensus 128 y~f~~~~~aGT~WYH~H~~~~t~~qv~~GL~G~lII~d~~~~~~~~p~~~~~~d~~l~l~D~~~~~~g~~~~~~~~~~-- 205 (471)
T PRK10883 128 PVLPIRQNAATCWYHANTPNRMAQHVYNGLAGMWLVEDEVSKSLPIPNHYGVDDFPVIIQDKRLDNFGTPEYNEPGSG-- 205 (471)
T ss_pred EEEecCCCceeeEEccCCCCchhhhHhcCCeEEEEEeCCcccccCCcccCCCcceeEEeeeeeeccCCCccccccccC--
Confidence 566555 5999999999 567999999999999998764333 3454 49999999999987554322111111
Q ss_pred CCCCCCeEEECCCCCCCCccccccCCCCccccccCCCCCCCceEEEecCCCeEEEEEEecCcceEEEEEE-eCceeEEEE
Q 012467 74 WIGEPQTLLINGRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAV-KNHKMVVVE 152 (463)
Q Consensus 74 ~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~i-~~h~~~via 152 (463)
...+|.+||||+..+ .++|++ ++|||||||+|+.+.+.|+| ++|+|+|||
T Consensus 206 -g~~gd~~lvNG~~~p---------------------------~~~v~~-~~~RlRliNas~~~~~~l~l~d~~~~~vIa 256 (471)
T PRK10883 206 -GFVGDTLLVNGVQSP---------------------------YVEVSR-GWVRLRLLNASNARRYQLQMSDGRPLHVIA 256 (471)
T ss_pred -CccCCeeEECCccCC---------------------------eEEecC-CEEEEEEEEccCCceEEEEEcCCCeEEEEE
Confidence 246899999999764 688987 58999999999999999999 899999999
Q ss_pred eCCccc-ceeeEeeEEecCCceEEEEEecCCCCCCceEEEEEecCCCC----C--CC----CeEEEEEeCCCCCCCCCCC
Q 012467 153 ADGNYV-QPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKP----A--TP----PALTLLNYHPTSASKIPLS 221 (463)
Q Consensus 153 ~DG~~v-~P~~~~~l~i~~GeR~dvlV~~~~~~~g~y~ir~~~~~~~~----~--~~----~~~a~l~y~~~~~~~~~~~ 221 (463)
+||+++ +|..++.|.|+|||||||+|++++ ++.+.+.+....... . .. ....+++............
T Consensus 257 ~DGg~~~~P~~~~~l~l~pGeR~dvlVd~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (471)
T PRK10883 257 GDQGFLPAPVSVKQLSLAPGERREILVDMSN--GDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLLPLVTD 334 (471)
T ss_pred eCCCcccCCcEeCeEEECCCCeEEEEEECCC--CceEEEECCCccccccccccccCCccccccceeEEEEccccccCCCC
Confidence 997765 899999999999999999999976 346666652111000 0 00 0111222221000000000
Q ss_pred CCCCCCCCCCCcccccccccccccCCCCCCCCccceEEEEEeeeeccCCeEEEEEecccCCCCCCCCccccccCCCCCCC
Q 012467 222 PPPITPRWDDYDHSKSFSNKIFALMGSPKPPTNFHRRLTLLNTQNTINGFTKWAINNVSLTLPPTPYLGSIKYGLKDAFD 301 (463)
Q Consensus 222 ~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~~~~~~~~iNg~~~~~p~~p~l~~~~~~~~~~~~ 301 (463)
..| ..+... +..+....+++.+.+.. ..|.|||.+|...
T Consensus 335 ---~~p------------~~l~~~---~~~~~~~~~~~~~~l~~------~~~~INg~~~~~~----------------- 373 (471)
T PRK10883 335 ---NLP------------MRLLPD---EIMEGSPIRSREISLGD------DLPGINGALWDMN----------------- 373 (471)
T ss_pred ---cCC------------hhhcCC---CCCCCCCcceEEEEecC------CcCccCCcccCCC-----------------
Confidence 000 011110 11112223444444321 1367999887421
Q ss_pred CCCCCCCCCCCcccCCCCCCCCccccceEEEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcccc
Q 012467 302 QNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDE 381 (463)
Q Consensus 302 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~~~ 381 (463)
+. .+.++.|++++|.|.|. + .|||||||+.|||++++.....
T Consensus 374 --~~------------------------~~~~~~g~~e~W~~~n~--~------~HP~HlHg~~FqVl~~~G~~~~---- 415 (471)
T PRK10883 374 --RI------------------------DVTAQQGTWERWTVRAD--M------PQAFHIEGVMFLIRNVNGAMPF---- 415 (471)
T ss_pred --cc------------------------eeecCCCCEEEEEEECC--C------CcCEeECCccEEEEEecCCCCC----
Confidence 00 15789999999999885 4 7999999999999999533211
Q ss_pred ccCCCCCCCccceEEeCCCcEEEEEEEcCCce----eeeecccchHhHHccceeeeeccc
Q 012467 382 KKFNLKNPPLKNTAVIFPYGWTALRFVADNPG----AWAFHCHIEPHFHIGMGVVLALGV 437 (463)
Q Consensus 382 ~~~n~~~p~~rDTv~v~~~g~~~irf~adnpG----~w~~HCHi~~H~~~GM~~~~~~~~ 437 (463)
.....|||||.|+ +.+.|+++++++| .|||||||++|+|.|||..|.+.+
T Consensus 416 ----~~~~gwkDTV~v~--~~v~i~~~f~~~~~~~~~~m~HCHiLeHeD~GMM~~~~V~~ 469 (471)
T PRK10883 416 ----PEDRGWKDTVWVD--GQVELLVYFGQPSWAHFPFLFYSQTLEMADRGSIGQLLVNP 469 (471)
T ss_pred ----ccccCcCcEEEcC--CeEEEEEEecCCCCCCCcEEeecccccccccCCccCeEEec
Confidence 1123799999996 4699999999887 899999999999999999998743
No 16
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.2e-47 Score=392.15 Aligned_cols=331 Identities=28% Similarity=0.366 Sum_probs=226.3
Q ss_pred cccccccceeEEEeccchhhhhcceeeEEEEeCCCCCCCCCCCCcceEEEEeeeecccHHHHHhhhcCCCCCCCCCCCeE
Q 012467 2 LDVWQVQAGTYFYHGHLGMQRSAGLYGSLIVDVADGEKEPFHYDGEFNLLLSDWWHRSVHEQEVGLSSRPLRWIGEPQTL 81 (463)
Q Consensus 2 ~~~~~~~~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~d~e~~l~l~D~~~~~~~~~~~~~~~~~~~~~~~~d~~ 81 (463)
|.|.+.++||||||+|...|+++||+|++||++..+ .+..+|.+.++++.+|................ ....+..
T Consensus 118 y~f~~~~~gT~wyh~H~~~Q~~~Gl~G~~II~~~~~--~~~~~d~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~g~~~ 192 (451)
T COG2132 118 YTFTQDVPGTYWYHPHTHGQVYDGLAGALIIEDENS--EPLGVDDEPVILQDDWLDEDGTDLYQEGPAMG---GFPGDTL 192 (451)
T ss_pred EeecCCCCcceEeccCCCchhhcccceeEEEeCCCC--CCCCCCceEEEEEeeeecCCCCccccCCcccc---CCCCCeE
Confidence 678888899999999998899999999999999855 46688999999999999877654433211111 3478899
Q ss_pred EECCCCCCCCccccccCCCCccccccCCCCCCCceEEEecCCCeEEEEEEecCcceEEEEEEeCceeEEEEeCCccccee
Q 012467 82 LINGRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPF 161 (463)
Q Consensus 82 liNG~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~P~ 161 (463)
+|||+..+ .+.+ ++++|||||+|+++.+++.+++.+++|+||++||.++.|.
T Consensus 193 ~vnG~~~p---------------------------~~~~-~~g~~rlRl~n~~~~~~~~~~~~~~~~~Vi~~DG~~v~~~ 244 (451)
T COG2132 193 LVNGAILP---------------------------FKAV-PGGVVRLRLLNAGNARTYHLALGGGPLTVIAVDGGPLPPV 244 (451)
T ss_pred EECCCccc---------------------------eeec-CCCeEEEEEEecCCceEEEEEecCceEEEEEeCCcCcCce
Confidence 99996543 3444 5567999999999999999999999999999999999999
Q ss_pred eEeeEEecCCceEEEEEecCCCCCCceEEEEEecCCCCCCCCeEEEEEeCCCC-CCCCCCCCCCCCCCCCCCcccccccc
Q 012467 162 EVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKPATPPALTLLNYHPTS-ASKIPLSPPPITPRWDDYDHSKSFSN 240 (463)
Q Consensus 162 ~~~~l~i~~GeR~dvlV~~~~~~~g~y~ir~~~~~~~~~~~~~~a~l~y~~~~-~~~~~~~~~p~~p~~~~~~~~~~~~~ 240 (463)
.++.+.|+|||||||+|+++. .+.+.+.+.. .... ....+........ ............+........ ...
T Consensus 245 ~~d~~~l~p~er~~v~v~~~~--~~~~~l~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~--~~~ 317 (451)
T COG2132 245 SVDELYLAPGERYEVLVDMND--GGAVTLTALG-EDMP--DTLKGFRAPNPILTPSYPVLNGRVGAPTGDMADHA--PVG 317 (451)
T ss_pred eeeeEEecCcceEEEEEEcCC--CCeEEEEecc-ccCC--ceeeeeeccccccccccccccccccCCCcchhhcc--ccc
Confidence 999999999999999999986 4677777654 1111 1111111111000 000000000000000000000 000
Q ss_pred cccccCCCCCCCCccceEEEEEeeeeccCCeEEEEEecccCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccCCCCC
Q 012467 241 KIFALMGSPKPPTNFHRRLTLLNTQNTINGFTKWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPV 320 (463)
Q Consensus 241 ~~~~~~~~~~~p~~~d~~~~~~~~~~~~~~~~~~~iNg~~~~~p~~p~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 320 (463)
.+.... ..+....+....+... .+...|.+|+..|.. .+
T Consensus 318 ~~~~~~--~~~~~~~~~~~~l~~~----~~~~~~~~n~~~~~~-------------------~~---------------- 356 (451)
T COG2132 318 LLVTIL--VEPGPNRDTDFHLIGG----IGGYVWAINGKAFDD-------------------NR---------------- 356 (451)
T ss_pred cchhhc--CCCcccccccchhhcc----cccccccccCccCCC-------------------Cc----------------
Confidence 000000 0000001111111110 112346777665531 00
Q ss_pred CCCccccceEEEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCccccccCCCCCCCccceEEeCCC
Q 012467 321 NANTTLGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPY 400 (463)
Q Consensus 321 ~~~~~~~~~~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~ 400 (463)
..+.++.|++++|+|.|.+.+ .|||||||+.|+|++.+... ....+.||||+.+.++
T Consensus 357 --------~~~~~~~G~~~~~~i~n~~~~------~HP~HlHg~~F~v~~~~~~~---------~~~~~~~kDTv~v~~~ 413 (451)
T COG2132 357 --------VTLIAKAGTRERWVLTNDTPM------PHPFHLHGHFFQVLSGDAPA---------PGAAPGWKDTVLVAPG 413 (451)
T ss_pred --------CceeecCCCEEEEEEECCCCC------ccCeEEcCceEEEEecCCCc---------ccccCccceEEEeCCC
Confidence 127889999999999999887 99999999999999986111 1234689999999999
Q ss_pred cEEEEEEEcCCceeeeecccchHhHHccceeeeecc
Q 012467 401 GWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALG 436 (463)
Q Consensus 401 g~~~irf~adnpG~w~~HCHi~~H~~~GM~~~~~~~ 436 (463)
+.++|+|.+++||.|+||||+++|++.|||..+.+.
T Consensus 414 ~~~~v~~~a~~~g~~~~HCH~l~H~~~Gm~~~~~v~ 449 (451)
T COG2132 414 ERLLVRFDADYPGPWMFHCHILEHEDNGMMGQFGVV 449 (451)
T ss_pred eEEEEEEeCCCCCceEEeccchhHhhcCCeeEEEec
Confidence 999999999999999999999999999999988654
No 17
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=99.98 E-value=6.7e-32 Score=238.51 Aligned_cols=152 Identities=35% Similarity=0.674 Sum_probs=126.4
Q ss_pred cceEEEEeeeecccHHHHHhhhcCCC---CCCCCCCCeEEECCCCCCCCccccccCCCCccccccCCCCCCCceEEEecC
Q 012467 46 GEFNLLLSDWWHRSVHEQEVGLSSRP---LRWIGEPQTLLINGRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQP 122 (463)
Q Consensus 46 ~e~~l~l~D~~~~~~~~~~~~~~~~~---~~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~v~~ 122 (463)
+|++|+|+||+|+...++...+...+ ..+++++|++||||+++++|... .......+.+.+++
T Consensus 1 ~e~~i~l~DW~~~~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~--------------~~~~~~~~~~~v~~ 66 (159)
T PF00394_consen 1 EEYVIMLSDWYHDDSDDLLQQYFAPGKGPMGMPPIPDSILINGKGRFDCSSA--------------DYTGGEPPVIKVKP 66 (159)
T ss_dssp GGGEEEEEEETSSCTTTHBH-HSSCHHHSHSCTSSCSEEEETTBTCBTTCTT--------------GSTTSTSGEEEEET
T ss_pred CeEEEEEeECCCCCHHHhhhhhccccccccCCCcCCcEEEECCccccccccc--------------cccccccceEEEcC
Confidence 48999999999999888776555442 22467999999999999977641 11245567999999
Q ss_pred CCeEEEEEEecCcceEEEEEEeCceeEEEEeCCcccceeeEeeEEecCCceEEEEEecCCCCCCceEEEEEecCCC---C
Q 012467 123 NKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRK---P 199 (463)
Q Consensus 123 g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~P~~~~~l~i~~GeR~dvlV~~~~~~~g~y~ir~~~~~~~---~ 199 (463)
|++|||||||+|+.+.+.|+|+||+|+|||+||++++|..+++|.|++||||||+|++++ ++|+|||++.....+ .
T Consensus 67 g~~~rlRliNa~~~~~~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~G~R~dvlv~~~~-~~g~y~i~~~~~~~~~~~~ 145 (159)
T PF00394_consen 67 GERYRLRLINAGASTSFNFSIDGHPMTVIAADGVPVEPYKVDTLVLAPGQRYDVLVTADQ-PPGNYWIRASYQHDSINDP 145 (159)
T ss_dssp TTEEEEEEEEESSS-BEEEEETTBCEEEEEETTEEEEEEEESBEEE-TTEEEEEEEEECS-CSSEEEEEEEESSSSSHSH
T ss_pred CcEEEEEEEeccCCeeEEEEeeccceeEeeeccccccccccceEEeeCCeEEEEEEEeCC-CCCeEEEEEecccCCCccC
Confidence 999999999999999999999999999999999999999999999999999999999998 689999999743232 2
Q ss_pred CCCCeEEEEEeCC
Q 012467 200 ATPPALTLLNYHP 212 (463)
Q Consensus 200 ~~~~~~a~l~y~~ 212 (463)
.....+|+|+|++
T Consensus 146 ~~~~~~aiL~Y~~ 158 (159)
T PF00394_consen 146 QNGNALAILRYDG 158 (159)
T ss_dssp GGGTTEEEEEETT
T ss_pred CCcEEEEEEEECC
Confidence 4577899999985
No 18
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.98 E-value=4e-32 Score=263.97 Aligned_cols=182 Identities=16% Similarity=0.152 Sum_probs=144.3
Q ss_pred cccccccceeEEEecc----chhhhhcceeeEEEEeCCCCCCCCCCCCcceEEEEeeeecccHHHHHhhhcCC-C-CCCC
Q 012467 2 LDVWQVQAGTYFYHGH----LGMQRSAGLYGSLIVDVADGEKEPFHYDGEFNLLLSDWWHRSVHEQEVGLSSR-P-LRWI 75 (463)
Q Consensus 2 ~~~~~~~~GT~WYHsH----~~~q~~~Gl~G~lIV~~~~~~~~p~~~d~e~~l~l~D~~~~~~~~~~~~~~~~-~-~~~~ 75 (463)
|+|.+.++|||||||| ++.|+..||+|+|||++++. .+ .+|+|++|+++||+++........+... . .. .
T Consensus 110 y~F~~~~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~~--~~-~~d~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~-~ 185 (311)
T TIGR02376 110 LRFKATRPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPREG--LP-EYDKEYYIGESDLYTPKDEGEGGAYEDDVAAMR-T 185 (311)
T ss_pred EEEEcCCCEEEEEEcCCCCchhHHhhcCcceEEEeeccCC--Cc-CcceeEEEeeeeEeccccccccccccchHHHHh-c
Confidence 7888999999999999 57899999999999998754 23 6799999999999997643321111100 0 01 2
Q ss_pred CCCCeEEECCCCCCCCccccccCCCCccccccCCCCCCCceEEEecCCCeEEEEEEecCcceEEEEEEeCceeEEEEeCC
Q 012467 76 GEPQTLLINGRGQFNCSLAAHFSNGSAEQCKLRGNEQCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADG 155 (463)
Q Consensus 76 ~~~d~~liNG~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG 155 (463)
.+++.++|||+....+ +.+.+++|+++||||||+|..+.+.|+++++.+++|+.||
T Consensus 186 ~~~~~~~iNG~~~~~~------------------------~~~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~v~~DG 241 (311)
T TIGR02376 186 LTPTHVVFNGAVGALT------------------------GDNALTAGVGERVLFVHSQPNRDSRPHLIGGHGDYVWVTG 241 (311)
T ss_pred CCCCEEEECCccCCCC------------------------CCcccccCCcEEEEEEcCCCCCCCCCeEecCCceEEEECC
Confidence 4679999999965310 1468999999999999999999999999999999999999
Q ss_pred cccceee--EeeEEecCCceEEEEEecCCCCCCceEEEEEecCCCCCCCCeEEEEEeCCCC
Q 012467 156 NYVQPFE--VDDMDIYSGESYSVLLTTNQDPSYNYWISAGVRGRKPATPPALTLLNYHPTS 214 (463)
Q Consensus 156 ~~v~P~~--~~~l~i~~GeR~dvlV~~~~~~~g~y~ir~~~~~~~~~~~~~~a~l~y~~~~ 214 (463)
.++.|.. ++++.|+||||+||+|++++ +|.|++++...... ......|+|+|++..
T Consensus 242 ~~~~~~~~~~~~~~i~PG~R~dv~v~~~~--pG~y~~~~~~~~~~-~~~g~~~~i~~~g~~ 299 (311)
T TIGR02376 242 KFANPPNRDVETWFIPGGSAAAALYTFEQ--PGVYAYVDHNLIEA-FEKGAAAQVKVEGAW 299 (311)
T ss_pred cccCCCCCCcceEEECCCceEEEEEEeCC--CeEEEEECcHHHHH-HhCCCEEEEEECCCC
Confidence 9998754 89999999999999999997 58999998654332 133578999998643
No 19
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.97 E-value=1.8e-30 Score=224.38 Aligned_cols=107 Identities=42% Similarity=0.826 Sum_probs=96.6
Q ss_pred ccceEEEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCccccccCCCCCCCccceEEeCCCcEEEE
Q 012467 326 LGSGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTAL 405 (463)
Q Consensus 326 ~~~~~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~i 405 (463)
.+..++.++.|++|+|+|+|.+.. .|||||||++|+|++++.+.++......+++.+|.||||+.|+++++++|
T Consensus 31 ~~~~~~~~~~g~~v~~~l~N~~~~------~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i 104 (138)
T PF07731_consen 31 GNTPVIEVKNGDVVEIVLQNNGSM------PHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVI 104 (138)
T ss_dssp STTSEEEEETTSEEEEEEEECTTS------SEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEE
T ss_pred CCcceEEEeCCCEEEEEEECCCCC------ccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEE
Confidence 445679999999999999998877 99999999999999998877655556678889999999999999999999
Q ss_pred EEEcCCceeeeecccchHhHHccceeeeecccc
Q 012467 406 RFVADNPGAWAFHCHIEPHFHIGMGVVLALGVE 438 (463)
Q Consensus 406 rf~adnpG~w~~HCHi~~H~~~GM~~~~~~~~~ 438 (463)
||+++|||.|+||||+++|++.|||++|.+.++
T Consensus 105 ~~~~~~~G~w~~HCHi~~H~~~GM~~~~~v~~~ 137 (138)
T PF07731_consen 105 RFRADNPGPWLFHCHILEHEDNGMMAVFVVGPQ 137 (138)
T ss_dssp EEEETSTEEEEEEESSHHHHHTT-EEEEEECHH
T ss_pred EEEeecceEEEEEEchHHHHhCCCeEEEEEcCC
Confidence 999999999999999999999999999998764
No 20
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.63 E-value=7.8e-14 Score=135.99 Aligned_cols=213 Identities=15% Similarity=0.111 Sum_probs=140.5
Q ss_pred eEEEecCCCeEEEEEEecCcc-eEEEEEEeCceeEEEEeCCcccceeeEeeEEecCCceEEEEEecCCCCCCceEEEEEe
Q 012467 116 QILHVQPNKTYRLRIASTTAL-ASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGV 194 (463)
Q Consensus 116 ~~~~v~~g~~~RlRliNa~~~-~~~~~~i~~h~~~via~DG~~v~P~~~~~l~i~~GeR~dvlV~~~~~~~g~y~ir~~~ 194 (463)
++|++++|+++++++.|.... ..+.++++++. +.||+.. ...|.|||++.+-+++++ +|.||.....
T Consensus 59 P~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~----~~dg~~~------~~~I~PG~t~ty~F~~~~--~Gty~YH~H~ 126 (311)
T TIGR02376 59 PLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT----GALGGAA------LTQVNPGETATLRFKATR--PGAFVYHCAP 126 (311)
T ss_pred ceEEEECCCEEEEEEEeCCCCCCceeeeecCCC----ccCCCCc------ceeECCCCeEEEEEEcCC--CEEEEEEcCC
Confidence 489999999999999998632 45677777753 4677542 123899999999999875 7999998764
Q ss_pred cCC-CCC-CCCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCcccccccccccccCCCCCCCCccceEEEEEeeeecc----
Q 012467 195 RGR-KPA-TPPALTLLNYHPTSASKIPLSPPPITPRWDDYDHSKSFSNKIFALMGSPKPPTNFHRRLTLLNTQNTI---- 268 (463)
Q Consensus 195 ~~~-~~~-~~~~~a~l~y~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~---- 268 (463)
... ..+ .....+.|.+++... . | ..|+++.+.+.....
T Consensus 127 ~~~~~~q~~~Gl~G~liV~~~~~-------~---~--------------------------~~d~e~~l~l~d~~~~~~~ 170 (311)
T TIGR02376 127 PGMVPWHVVSGMNGAIMVLPREG-------L---P--------------------------EYDKEYYIGESDLYTPKDE 170 (311)
T ss_pred CCchhHHhhcCcceEEEeeccCC-------C---c--------------------------CcceeEEEeeeeEeccccc
Confidence 321 111 223345555542110 0 0 012222211110000
Q ss_pred ---------------CCeEEEEEecccCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccceEEEc
Q 012467 269 ---------------NGFTKWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYML 333 (463)
Q Consensus 269 ---------------~~~~~~~iNg~~~~~p~~p~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (463)
.......|||+.... . ..+.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~iNG~~~~~---------------------~-----------------------~~~~v 206 (311)
T TIGR02376 171 GEGGAYEDDVAAMRTLTPTHVVFNGAVGAL---------------------T-----------------------GDNAL 206 (311)
T ss_pred cccccccchHHHHhcCCCCEEEECCccCCC---------------------C-----------------------CCccc
Confidence 000123444442210 0 01467
Q ss_pred cCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCccccccCCCCCCC-ccceEEeCCCcEEEEEEEcCCc
Q 012467 334 GLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPP-LKNTAVIFPYGWTALRFVADNP 412 (463)
Q Consensus 334 ~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~~~~~~n~~~p~-~rDTv~v~~~g~~~irf~adnp 412 (463)
+.|++++|.|.|.+... .+.||++|++|.++.. +|.+. ..+. ..|++.|.||+...|.+++++|
T Consensus 207 ~~G~~~RlRiiNa~~~~-----~~~~~~~g~~~~~v~~-DG~~~---------~~~~~~~~~~~i~PG~R~dv~v~~~~p 271 (311)
T TIGR02376 207 TAGVGERVLFVHSQPNR-----DSRPHLIGGHGDYVWV-TGKFA---------NPPNRDVETWFIPGGSAAAALYTFEQP 271 (311)
T ss_pred ccCCcEEEEEEcCCCCC-----CCCCeEecCCceEEEE-CCccc---------CCCCCCcceEEECCCceEEEEEEeCCC
Confidence 89999999999987531 7999999999999998 55542 1122 3699999999999999999999
Q ss_pred eeeeecccchHhH-Hccceeeeec
Q 012467 413 GAWAFHCHIEPHF-HIGMGVVLAL 435 (463)
Q Consensus 413 G~w~~HCHi~~H~-~~GM~~~~~~ 435 (463)
|.|++|||...|. ..||++++..
T Consensus 272 G~y~~~~~~~~~~~~~g~~~~i~~ 295 (311)
T TIGR02376 272 GVYAYVDHNLIEAFEKGAAAQVKV 295 (311)
T ss_pred eEEEEECcHHHHHHhCCCEEEEEE
Confidence 9999999999998 6699988853
No 21
>PLN02604 oxidoreductase
Probab=99.05 E-value=1.6e-09 Score=114.36 Aligned_cols=85 Identities=24% Similarity=0.296 Sum_probs=68.4
Q ss_pred EEccCCCEEEEEEEeCC-CCCCCCCCCCCeeecCCceEEEee--cCCCCCccccccCCCCCCCccceEEeCCCcEEEEEE
Q 012467 331 YMLGLNTTVDVILQNAN-AIRPNLSEIHPWHLHGHDFWVLGR--GEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRF 407 (463)
Q Consensus 331 ~~~~~g~~v~~vl~N~~-~~~~~~~~~HP~HlHG~~f~vl~~--g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf 407 (463)
++++.|+.+++.+.|.. .. .|+||+||... .+. -+|. +.-....|+||+..+++|
T Consensus 57 i~~~~Gd~v~v~v~N~l~~~------~~~iH~HG~~~--~~~~~~DG~--------------~~~tq~~i~pg~s~~y~f 114 (566)
T PLN02604 57 ILAQQGDTVIVELKNSLLTE------NVAIHWHGIRQ--IGTPWFDGT--------------EGVTQCPILPGETFTYEF 114 (566)
T ss_pred EEEECCCEEEEEEEeCCCCC------CCCEEeCCCCC--CCCccccCC--------------CccccCccCCCCeEEEEE
Confidence 88999999999999985 34 79999999942 111 0111 122445889999999999
Q ss_pred EcCCceeeeecccchHhHHccceeeeeccc
Q 012467 408 VADNPGAWAFHCHIEPHFHIGMGVVLALGV 437 (463)
Q Consensus 408 ~adnpG~w~~HCHi~~H~~~GM~~~~~~~~ 437 (463)
+++++|.|.||||...|...||++.|.+.+
T Consensus 115 ~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~ 144 (566)
T PLN02604 115 VVDRPGTYLYHAHYGMQREAGLYGSIRVSL 144 (566)
T ss_pred EcCCCEEEEEeeCcHHHHhCCCeEEEEEEe
Confidence 999999999999999999999999986553
No 22
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=98.99 E-value=5.3e-08 Score=102.52 Aligned_cols=209 Identities=18% Similarity=0.199 Sum_probs=130.9
Q ss_pred eEEEecCCCeEEEEEEecCcceEEEEEEeCceeEEEE---eCCcccceeeEeeEEecCCceEEEEEecCCCCCCceEEEE
Q 012467 116 QILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVE---ADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISA 192 (463)
Q Consensus 116 ~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via---~DG~~v~P~~~~~l~i~~GeR~dvlV~~~~~~~g~y~ir~ 192 (463)
|+|.++.|.++++++.|--.. ..+|+-|-+.+.. .||.+ .+..-.|.||+.+...+++.+ ..|+||-..
T Consensus 34 P~i~~~~GD~v~v~v~N~l~~---~tsiHwHGl~q~~~~~~DGv~----~vTq~pI~PG~s~~Y~f~~~~-~~GT~WYHs 105 (539)
T TIGR03389 34 PTLYAREGDTVIVNVTNNVQY---NVTIHWHGVRQLRNGWADGPA----YITQCPIQPGQSYVYNFTITG-QRGTLWWHA 105 (539)
T ss_pred CEEEEEcCCEEEEEEEeCCCC---CeeEecCCCCCCCCCCCCCCc----ccccCCcCCCCeEEEEEEecC-CCeeEEEec
Confidence 589999999999999998653 3355555555443 68876 233446899999999999863 479999987
Q ss_pred EecCCCCCCCCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCcccccccccccccCCCCCCCCccceEEEEEeeeec-----
Q 012467 193 GVRGRKPATPPALTLLNYHPTSASKIPLSPPPITPRWDDYDHSKSFSNKIFALMGSPKPPTNFHRRLTLLNTQNT----- 267 (463)
Q Consensus 193 ~~~~~~~~~~~~~a~l~y~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~----- 267 (463)
..... ....++-|..++.... +.| .+. .|+++.+.++...
T Consensus 106 H~~~~---~~Gl~G~lIV~~~~~~-----~~~-~~~--------------------------~d~e~~l~l~Dw~~~~~~ 150 (539)
T TIGR03389 106 HISWL---RATVYGAIVILPKPGV-----PYP-FPK--------------------------PDREVPIILGEWWNADVE 150 (539)
T ss_pred Cchhh---hccceEEEEEcCCCCC-----CCC-CCC--------------------------CCceEEEEecccccCCHH
Confidence 65322 1234455544421110 000 000 0111111110000
Q ss_pred ------------cCCeEEEEEecccCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccceEEEccC
Q 012467 268 ------------INGFTKWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGL 335 (463)
Q Consensus 268 ------------~~~~~~~~iNg~~~~~p~~p~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (463)
..-.....|||+...... . ......++.++.
T Consensus 151 ~~~~~~~~~~~~~~~~d~~liNG~~~~~~~-----------------~--------------------~~~~~~~i~v~~ 193 (539)
T TIGR03389 151 AVINQANQTGGAPNVSDAYTINGHPGPLYN-----------------C--------------------SSKDTFKLTVEP 193 (539)
T ss_pred HHHHHHHhcCCCCCccceEEECCCcCCCCC-----------------C--------------------CCCCceEEEECC
Confidence 000012455655321000 0 000112588999
Q ss_pred CCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCccccccCCCCCCCccceEEeCCCcEEEEEEEcCC-cee
Q 012467 336 NTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVADN-PGA 414 (463)
Q Consensus 336 g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~adn-pG~ 414 (463)
|++++|.|+|.+.. ..+.|||+||+|.||+. +|.+ ..|...|++.|.+|+...|.+++++ +|.
T Consensus 194 G~~~RlRlINa~~~-----~~~~~~idgH~~~VIa~-DG~~----------~~P~~~~~l~i~~GqRydVlv~a~~~~g~ 257 (539)
T TIGR03389 194 GKTYLLRIINAALN-----DELFFAIANHTLTVVEV-DATY----------TKPFKTKTIVIGPGQTTNVLLTADQSPGR 257 (539)
T ss_pred CCEEEEEEEeccCC-----ceEEEEECCCeEEEEEe-CCcc----------cCceEeCeEEecCCCEEEEEEECCCCCce
Confidence 99999999998755 16899999999999998 4543 3467789999999999999999986 898
Q ss_pred eeeccc
Q 012467 415 WAFHCH 420 (463)
Q Consensus 415 w~~HCH 420 (463)
|.++-+
T Consensus 258 y~i~~~ 263 (539)
T TIGR03389 258 YFMAAR 263 (539)
T ss_pred EEEEEe
Confidence 887654
No 23
>PLN02835 oxidoreductase
Probab=98.91 E-value=1.1e-07 Score=99.51 Aligned_cols=73 Identities=12% Similarity=0.123 Sum_probs=61.0
Q ss_pred EEEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCccccccCCCCCCCccceEEeCCCcEEEEEEEc
Q 012467 330 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 409 (463)
Q Consensus 330 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~a 409 (463)
.+.++.|++++|.|+|.+... ..-||+.||+|.|++. +|.+. .|...|++.|.+|++..|-+++
T Consensus 203 ~~~v~~G~~yRlRliNa~~~~-----~~~f~i~gH~~~VI~~-DG~~v----------~p~~~~~l~i~~GqRydvlv~~ 266 (539)
T PLN02835 203 TFSGDQGKTYMFRISNVGLST-----SLNFRIQGHTMKLVEV-EGSHT----------IQNIYDSLDVHVGQSVAVLVTL 266 (539)
T ss_pred eEEECCCCEEEEEEEEcCCCc-----cEEEEECCCEEEEEEE-CCccC----------CCceeeEEEECcCceEEEEEEc
Confidence 378999999999999988652 7999999999999998 55442 3566899999999999999998
Q ss_pred CC-ceeeeec
Q 012467 410 DN-PGAWAFH 418 (463)
Q Consensus 410 dn-pG~w~~H 418 (463)
+. +|.|.++
T Consensus 267 ~~~~g~y~i~ 276 (539)
T PLN02835 267 NQSPKDYYIV 276 (539)
T ss_pred CCCCCcEEEE
Confidence 75 6866655
No 24
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=98.84 E-value=4.4e-09 Score=87.46 Aligned_cols=89 Identities=17% Similarity=0.161 Sum_probs=68.1
Q ss_pred EEEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCccccccCCCCCCCccceEEeCCCcEEEEEEEc
Q 012467 330 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 409 (463)
Q Consensus 330 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~a 409 (463)
++.++.|+.|++.+.|.... .+.+|+||...---...+|... . -.-.|.||+..+.+|++
T Consensus 27 tI~v~~Gd~v~i~~~N~l~~------~~siH~HG~~~~~~~~~DG~~~-------------~-~~~~i~pG~~~~Y~~~~ 86 (117)
T PF07732_consen 27 TIRVREGDTVRITVTNNLDE------PTSIHWHGLHQPPSPWMDGVPG-------------V-TQCPIAPGESFTYEFTA 86 (117)
T ss_dssp EEEEETTEEEEEEEEEESSS------GBSEEEETSBSTTGGGGSGGTT-------------T-SGSSBSTTEEEEEEEEE
T ss_pred EEEEEcCCeeEEEEEecccc------ccccccceeeeeeeeecCCccc-------------c-cceeEEeecceeeeEee
Confidence 59999999999999998765 8999999975321100122110 0 01247889999999999
Q ss_pred CC-ceeeeecccchHhHHccceeeeecccc
Q 012467 410 DN-PGAWAFHCHIEPHFHIGMGVVLALGVE 438 (463)
Q Consensus 410 dn-pG~w~~HCHi~~H~~~GM~~~~~~~~~ 438 (463)
+. +|.|.||||...|...||.+.|++.++
T Consensus 87 ~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 87 NQQAGTYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp SSCSEEEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred eccccceeEeeCCCchhcCcCEEEEEEcCC
Confidence 99 999999999999988999999987654
No 25
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=98.82 E-value=4.2e-07 Score=95.76 Aligned_cols=77 Identities=13% Similarity=0.153 Sum_probs=65.2
Q ss_pred EEEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCccccccCCCCCCCccceEEeCCCcEEEEEEEc
Q 012467 330 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 409 (463)
Q Consensus 330 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~a 409 (463)
++.++.|++++|.|+|.+... .+.|+|.||+|+||+. +|.+ ..|..-|.+.|.+|+.+.|.+++
T Consensus 261 ~~~v~~G~rvRLR~INas~~~-----~f~l~I~gh~m~VIa~-DG~~----------v~Pv~vd~l~I~pGeRyDVlV~~ 324 (587)
T TIGR01480 261 TGLFRPGEKVRLRFINGSAMT-----YFDVRIPGLKLTVVAV-DGQY----------VHPVSVDEFRIAPAETFDVIVEP 324 (587)
T ss_pred eEEECCCCEEEEEEEecCCCc-----eEEEEECCCEEEEEEc-CCcC----------cCceEeCeEEEcCcceeEEEEec
Confidence 478899999999999988652 7999999999999998 4543 24677899999999999999998
Q ss_pred CCceeeeecccch
Q 012467 410 DNPGAWAFHCHIE 422 (463)
Q Consensus 410 dnpG~w~~HCHi~ 422 (463)
...|.|.+.....
T Consensus 325 ~~~g~~~i~a~~~ 337 (587)
T TIGR01480 325 TGDDAFTIFAQDS 337 (587)
T ss_pred CCCceEEEEEEec
Confidence 8788998887654
No 26
>PLN02792 oxidoreductase
Probab=98.81 E-value=4.3e-07 Score=94.93 Aligned_cols=199 Identities=14% Similarity=0.119 Sum_probs=125.3
Q ss_pred eEEEecCCCeEEEEEEecCcceEEEEEEeCceeEEEE---eCCcccceeeEeeEEecCCceEEEEEecCCCCCCceEEEE
Q 012467 116 QILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVE---ADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISA 192 (463)
Q Consensus 116 ~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via---~DG~~v~P~~~~~l~i~~GeR~dvlV~~~~~~~g~y~ir~ 192 (463)
|+|++++|.++++++.|--. ...+|+-|-+.+.. .||.+. + .-.|.||+.+...++++. ..|+||-.+
T Consensus 47 P~I~~~~GD~v~V~v~N~L~---~~ttiHWHGl~q~~~~~~DGv~~----t-qcPI~PG~sftY~F~~~~-q~GT~WYHs 117 (536)
T PLN02792 47 PEIRSLTNDNLVINVHNDLD---EPFLLSWNGVHMRKNSYQDGVYG----T-TCPIPPGKNYTYDFQVKD-QVGSYFYFP 117 (536)
T ss_pred CcEEEECCCEEEEEEEeCCC---CCcCEeCCCcccCCCCccCCCCC----C-cCccCCCCcEEEEEEeCC-CccceEEec
Confidence 58999999999999999864 34566667666654 799653 1 247899999999999863 379999988
Q ss_pred EecCCCCCCCCeEE-EEEeCCCCCCCCCCCCCCCCCCCCCCcccccccccccccCCCCCCCCccceEEEEEeeeecc---
Q 012467 193 GVRGRKPATPPALT-LLNYHPTSASKIPLSPPPITPRWDDYDHSKSFSNKIFALMGSPKPPTNFHRRLTLLNTQNTI--- 268 (463)
Q Consensus 193 ~~~~~~~~~~~~~a-~l~y~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~--- 268 (463)
...... ....+| ++.+... .. +.| .+. .++++.+.++....
T Consensus 118 H~~~q~--~~Gl~G~liI~~~~-~~-----~~p-~~~--------------------------~d~e~~i~l~Dw~~~~~ 162 (536)
T PLN02792 118 SLAVQK--AAGGYGSLRIYSLP-RI-----PVP-FPE--------------------------PAGDFTFLIGDWYRRNH 162 (536)
T ss_pred Ccchhh--hcccccceEEeCCc-cc-----CcC-CCc--------------------------ccceeEEEecccccCCH
Confidence 653221 122232 2233211 00 000 000 01111111110000
Q ss_pred -------------C-CeEEEEEecccCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccceEEEcc
Q 012467 269 -------------N-GFTKWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLG 334 (463)
Q Consensus 269 -------------~-~~~~~~iNg~~~~~p~~p~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (463)
. ......|||+... ...++.++
T Consensus 163 ~~~~~~~~~g~~~~~~~d~~liNG~~~~--------------------------------------------~~~~~~v~ 198 (536)
T PLN02792 163 TTLKKILDGGRKLPLMPDGVMINGQGVS--------------------------------------------YVYSITVD 198 (536)
T ss_pred HHHHHHhhccCcCCCCCCEEEEeccCCC--------------------------------------------CcceEEEC
Confidence 0 0011233333110 00148899
Q ss_pred CCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCccccccCCCCCCCccceEEeCCCcEEEEEEEcCC-ce
Q 012467 335 LNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVADN-PG 413 (463)
Q Consensus 335 ~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~adn-pG 413 (463)
.|++++|.|.|.+... ..-|++.||+|.|++. +|.+ ..|...|++.|.+|++..|.++++. +|
T Consensus 199 ~Gk~yRlRliNa~~~~-----~~~f~i~gH~~tVI~~-DG~~----------v~p~~~~~l~i~~GqRydVlV~a~~~~g 262 (536)
T PLN02792 199 KGKTYRFRISNVGLQT-----SLNFEILGHQLKLIEV-EGTH----------TVQSMYTSLDIHVGQTYSVLVTMDQPPQ 262 (536)
T ss_pred CCCEEEEEEEEcCCCc-----eEEEEECCcEEEEEEe-CCcc----------CCCcceeEEEEccCceEEEEEEcCCCCc
Confidence 9999999999987652 7999999999999998 5544 2356679999999999999999987 57
Q ss_pred eeeec
Q 012467 414 AWAFH 418 (463)
Q Consensus 414 ~w~~H 418 (463)
.|.+.
T Consensus 263 ~Y~i~ 267 (536)
T PLN02792 263 NYSIV 267 (536)
T ss_pred eEEEE
Confidence 66654
No 27
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=98.78 E-value=4.7e-07 Score=95.19 Aligned_cols=226 Identities=12% Similarity=0.095 Sum_probs=125.7
Q ss_pred eEEEecCCCeEEEEEEecCcceEEEEEEeCceeE-EEEeCCcccceeeEeeEEecCCceEEEEEecCCCCCCceEEEEEe
Q 012467 116 QILHVQPNKTYRLRIASTTALASLNLAVKNHKMV-VVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGV 194 (463)
Q Consensus 116 ~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~-via~DG~~v~P~~~~~l~i~~GeR~dvlV~~~~~~~g~y~ir~~~ 194 (463)
|+|.+++|.++++++.|.-......++.+|-.+. --..||.+.. ..-.|.||+.+...++++....|+||.....
T Consensus 39 P~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~v----TQcpI~PG~sf~Y~f~~~~~q~GT~WYHsH~ 114 (538)
T TIGR03390 39 PEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLA----SQWPIPPGHFFDYEIKPEPGDAGSYFYHSHV 114 (538)
T ss_pred CeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCccc----ccCCCCCCCcEEEEEEecCCCCeeeEEecCC
Confidence 5899999999999999975433444555554332 2347998852 2235889999988888753347999998765
Q ss_pred cCCCCCCCCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCcccccccccccccCCCCCCCCccceEEEEEeeeeccCCeEEE
Q 012467 195 RGRKPATPPALTLLNYHPTSASKIPLSPPPITPRWDDYDHSKSFSNKIFALMGSPKPPTNFHRRLTLLNTQNTINGFTKW 274 (463)
Q Consensus 195 ~~~~~~~~~~~a~l~y~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~~~~~~~ 274 (463)
.. +.....+.|..++... .+ . .+ +. +....+....- .........+. .............
T Consensus 115 ~~---Q~~~l~G~lIV~~~~~-------~~-~-~~-d~----e~~l~l~Dw~~--~~~~~~~~~~~-~~~~~~~~~~d~~ 174 (538)
T TIGR03390 115 GF---QAVTAFGPLIVEDCEP-------PP-Y-KY-DD----ERILLVSDFFS--ATDEEIEQGLL-STPFTWSGETEAV 174 (538)
T ss_pred ch---hhhcceeEEEEccCCc-------cC-C-Cc-cC----cEEEEEeCCCC--CCHHHHHhhhh-ccCCccCCCCceE
Confidence 32 2222555555543110 00 0 00 00 00000000000 00000000000 0000000001124
Q ss_pred EEecccCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccceEEEccCCCEEEEEEEeCCCCCCCCC
Q 012467 275 AINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNLS 354 (463)
Q Consensus 275 ~iNg~~~~~p~~p~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~vl~N~~~~~~~~~ 354 (463)
.|||+......... .++ . ..| ....+.++.|++++|+|+|.+...
T Consensus 175 liNG~~~~~~~~~~-------~~~--------------------~---~~~-~~~~~~v~~G~~yRlRlINa~~~~---- 219 (538)
T TIGR03390 175 LLNGKSGNKSFYAQ-------INP--------------------S---GSC-MLPVIDVEPGKTYRLRFIGATALS---- 219 (538)
T ss_pred EECCcccccccccc-------ccC--------------------C---CCC-cceEEEECCCCEEEEEEEccCCce----
Confidence 45554221100000 000 0 000 013588999999999999988652
Q ss_pred CCCCeeecCCc-eEEEeecCCCCCccccccCCCCCCCccceEEeCCCcEEEEEEEcCCc
Q 012467 355 EIHPWHLHGHD-FWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVADNP 412 (463)
Q Consensus 355 ~~HP~HlHG~~-f~vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~adnp 412 (463)
..-|++.||+ |+|++. +|.+ ..|...|++.|.+|++..|.++++++
T Consensus 220 -~~~~~idgH~~~~VIa~-DG~~----------~~P~~v~~l~l~~GqRydVlv~~~~~ 266 (538)
T TIGR03390 220 -LISLGIEDHENLTIIEA-DGSY----------TKPAKIDHLQLGGGQRYSVLFKAKTE 266 (538)
T ss_pred -EEEEEECCCCeEEEEEe-CCCC----------CCceEeCeEEEccCCEEEEEEECCCc
Confidence 6899999999 999998 4543 45778899999999999999999864
No 28
>PLN02354 copper ion binding / oxidoreductase
Probab=98.77 E-value=6.8e-07 Score=93.82 Aligned_cols=75 Identities=11% Similarity=0.117 Sum_probs=63.3
Q ss_pred EEEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCccccccCCCCCCCccceEEeCCCcEEEEEEEc
Q 012467 330 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 409 (463)
Q Consensus 330 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~a 409 (463)
++.++.|++++|+|+|.+... ..-||+.||+|.|++. +|.+ ..|...|++.|.+|++..|.+++
T Consensus 208 ~~~v~~Gk~yRlRiINa~~~~-----~~~f~IdgH~~tVIa~-DG~~----------v~p~~~~~l~i~~GqRydVlv~a 271 (552)
T PLN02354 208 LFTMKPGKTYRYRICNVGLKS-----SLNFRIQGHKMKLVEM-EGSH----------VLQNDYDSLDVHVGQCFSVLVTA 271 (552)
T ss_pred EEEECCCCEEEEEEEecCCCc-----eEEEEECCceEEEEEe-CCcc----------cCCcceeEEEEccCceEEEEEEC
Confidence 589999999999999988652 7999999999999998 5544 23566799999999999999999
Q ss_pred CC-ceeeeeccc
Q 012467 410 DN-PGAWAFHCH 420 (463)
Q Consensus 410 dn-pG~w~~HCH 420 (463)
++ +|.|.+.-.
T Consensus 272 ~~~~g~Y~i~a~ 283 (552)
T PLN02354 272 NQAPKDYYMVAS 283 (552)
T ss_pred CCCCCcEEEEEe
Confidence 86 787776654
No 29
>PLN02168 copper ion binding / pectinesterase
Probab=98.77 E-value=5.9e-07 Score=93.95 Aligned_cols=192 Identities=11% Similarity=0.128 Sum_probs=120.0
Q ss_pred eEEEecCCCeEEEEEEecCcceEEEEEEeCceeEEEE---eCCcccceeeEeeEEecCCceEEEEEecCCCCCCceEEEE
Q 012467 116 QILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVE---ADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISA 192 (463)
Q Consensus 116 ~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via---~DG~~v~P~~~~~l~i~~GeR~dvlV~~~~~~~g~y~ir~ 192 (463)
|+|+++.|.++++++.|--.. . .+|+-|-+.+.. .||++. ..-.|.||+++...+++++ ..|+||...
T Consensus 57 P~I~~~~GD~v~V~v~N~L~~-~--ttiHWHGl~~~~~~~~DGv~g-----tQcpI~PG~sftY~F~~~~-q~GT~WYHs 127 (545)
T PLN02168 57 PLLNATANDVINVNIFNNLTE-P--FLMTWNGLQLRKNSWQDGVRG-----TNCPILPGTNWTYRFQVKD-QIGSYFYFP 127 (545)
T ss_pred CcEEEECCCEEEEEEEeCCCC-C--ccEeeCCccCCCCCCcCCCCC-----CcCCCCCCCcEEEEEEeCC-CCceEEEec
Confidence 589999999999999998753 3 345555555543 599763 2247999999999999863 379999987
Q ss_pred EecCCCCCCCCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCcccccccccccccCCCCCCCCccceEEEEEeeeeccC---
Q 012467 193 GVRGRKPATPPALTLLNYHPTSASKIPLSPPPITPRWDDYDHSKSFSNKIFALMGSPKPPTNFHRRLTLLNTQNTIN--- 269 (463)
Q Consensus 193 ~~~~~~~~~~~~~a~l~y~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~~--- 269 (463)
..... ......+.|..++.... +.| .+ +.++++.+.++.....
T Consensus 128 H~~~Q--~~~GL~G~lII~~~~~~-----~~p-~~--------------------------~~d~e~~l~l~Dw~~~~~~ 173 (545)
T PLN02168 128 SLLLQ--KAAGGYGAIRIYNPELV-----PVP-FP--------------------------KPDEEYDILIGDWFYADHT 173 (545)
T ss_pred Chhhh--hhCcceeEEEEcCCccc-----CcC-cC--------------------------cccceeeEEEEecCCCCHH
Confidence 64321 11223444444321110 000 00 0111111111100000
Q ss_pred -------------CeEEEEEecccCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccceEEEccCC
Q 012467 270 -------------GFTKWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLN 336 (463)
Q Consensus 270 -------------~~~~~~iNg~~~~~p~~p~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 336 (463)
......|||+.. ...++.++.|
T Consensus 174 ~~~~~~~~g~~~~~~d~~liNG~~~---------------------------------------------~~~~~~v~~G 208 (545)
T PLN02168 174 VMRASLDNGHSLPNPDGILFNGRGP---------------------------------------------EETFFAFEPG 208 (545)
T ss_pred HHHhhhhcCCCCCCCCEEEEeccCC---------------------------------------------CcceEEeCCC
Confidence 000122332210 0114889999
Q ss_pred CEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCccccccCCCCCCCccceEEeCCCcEEEEEEEcCC
Q 012467 337 TTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVADN 411 (463)
Q Consensus 337 ~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~adn 411 (463)
++++|+|.|.+... .+.|++.||+|+|++. +|.+ ..|...|++.|.+|++..|.+++++
T Consensus 209 ~~yRlRiiNa~~~~-----~~~~~IdgH~~tVIa~-DG~~----------v~p~~~~~l~i~~GqRydvlv~a~~ 267 (545)
T PLN02168 209 KTYRLRISNVGLKT-----CLNFRIQDHDMLLVET-EGTY----------VQKRVYSSLDIHVGQSYSVLVTAKT 267 (545)
T ss_pred CEEEEEEEeccCCc-----eEEEEECCcEEEEEEE-CCeE----------CCCceeeEEEEcCCceEEEEEEcCC
Confidence 99999999987652 7999999999999997 5544 3456779999999999999999975
No 30
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=98.76 E-value=4e-07 Score=95.90 Aligned_cols=244 Identities=13% Similarity=0.151 Sum_probs=128.7
Q ss_pred eEEEecCCCeEEEEEEecCcceEEEEEEeCceeEE-EEeCCcccceeeEeeEEecCCceEEEEEecCCCCCCceEEEEEe
Q 012467 116 QILHVQPNKTYRLRIASTTALASLNLAVKNHKMVV-VEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGV 194 (463)
Q Consensus 116 ~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~v-ia~DG~~v~P~~~~~l~i~~GeR~dvlV~~~~~~~g~y~ir~~~ 194 (463)
++|++++|+++++++.|........|+.+|....- -..||.+- +..-.|.||+++...+++++ .|+||.....
T Consensus 32 P~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~----vtq~~I~PG~s~~y~f~~~~--~Gt~wyH~H~ 105 (541)
T TIGR03388 32 PTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAG----VTQCAINPGETFIYNFVVDR--PGTYFYHGHY 105 (541)
T ss_pred CeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCc----cccCCcCCCCEEEEEEEcCC--CEEEEEEecc
Confidence 58999999999999999865455667777764211 22688753 23457899999999999976 6999998764
Q ss_pred cCCCCCCCCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCcccccccccccccCCCCCCCCccceEEEEEeeeeccCCeEEE
Q 012467 195 RGRKPATPPALTLLNYHPTSASKIPLSPPPITPRWDDYDHSKSFSNKIFALMGSPKPPTNFHRRLTLLNTQNTINGFTKW 274 (463)
Q Consensus 195 ~~~~~~~~~~~a~l~y~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~~~~~~~ 274 (463)
... ......+.|.+++..... .|. .+ +.+ ....+..... .........+. .............
T Consensus 106 ~~q--~~~Gl~G~liV~~~~~~~-----~p~--~~-d~e----~~l~l~Dw~~--~~~~~~~~~~~-~~~~~~~~~~d~~ 168 (541)
T TIGR03388 106 GMQ--RSAGLYGSLIVDVPDGEK-----EPF--HY-DGE----FNLLLSDWWH--KSIHEQEVGLS-SKPMRWIGEPQSL 168 (541)
T ss_pred hHH--hhccceEEEEEecCCCCC-----CCc--cc-cce----EEEEeecccC--CCHHHHHhhcc-cCCCcCCCCCcce
Confidence 211 112234444444221110 000 00 000 0000000000 00000000000 0000000000123
Q ss_pred EEecccCC-CCCCCCccccccCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccceEEEccCCCEEEEEEEeCCCCCCCC
Q 012467 275 AINNVSLT-LPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPNL 353 (463)
Q Consensus 275 ~iNg~~~~-~p~~p~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~vl~N~~~~~~~~ 353 (463)
.|||.... ......+. ..... .+.. +.+......++.++.|++++|+|+|.+..
T Consensus 169 liNG~g~~~~~~~~~~~------------~~~~~----~~~~-----~~~~~~~~~~~~v~~g~~~RlRliNa~~~---- 223 (541)
T TIGR03388 169 LINGRGQFNCSLAAKFS------------STNLP----QCNL-----KGNEQCAPQILHVEPGKTYRLRIASTTAL---- 223 (541)
T ss_pred EECCCCCCCCccccccC------------ccccc----hhhc-----cCCCCCCceEEEECCCCEEEEEEEccccc----
Confidence 45554211 00000000 00000 0000 00000001247899999999999998754
Q ss_pred CCCCCeeecCCceEEEeecCCCCCccccccCCCCCCCccceEEeCCCcEEEEEEEcCC-ce-eeeecc
Q 012467 354 SEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVADN-PG-AWAFHC 419 (463)
Q Consensus 354 ~~~HP~HlHG~~f~vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~adn-pG-~w~~HC 419 (463)
..+-|+++||+|+||+. +|.+ ..|..-|.+.|.+|++..|.++++. || .|-++-
T Consensus 224 -~~~~~~id~h~~~VIa~-DG~~----------v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira 279 (541)
T TIGR03388 224 -AALNFAIEGHKLTVVEA-DGNY----------VEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISV 279 (541)
T ss_pred -ceEEEEECCCEEEEEEe-CCEe----------cccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEE
Confidence 28999999999999998 4543 3467789999999999999999975 54 455543
No 31
>PLN02991 oxidoreductase
Probab=98.74 E-value=8.7e-07 Score=92.59 Aligned_cols=197 Identities=12% Similarity=0.083 Sum_probs=123.5
Q ss_pred eEEEecCCCeEEEEEEecCcceEEEEEEeCceeEE---EEeCCcccceeeEeeEEecCCceEEEEEecCCCCCCceEEEE
Q 012467 116 QILHVQPNKTYRLRIASTTALASLNLAVKNHKMVV---VEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISA 192 (463)
Q Consensus 116 ~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~v---ia~DG~~v~P~~~~~l~i~~GeR~dvlV~~~~~~~g~y~ir~ 192 (463)
|+|+++.|+++++++.|.-. . ..+|+-|-+.+ -..||.+. + .-.|.||+.+..-+++++ ..|+||..+
T Consensus 59 P~I~~~~GD~v~V~V~N~L~-~--~ttiHWHGi~q~~~~~~DGv~~----t-QcpI~PG~sftY~F~~~~-q~GT~WYHs 129 (543)
T PLN02991 59 PDIISVTNDNLIINVFNHLD-E--PFLISWSGIRNWRNSYQDGVYG----T-TCPIPPGKNYTYALQVKD-QIGSFYYFP 129 (543)
T ss_pred CcEEEECCCEEEEEecCCCC-C--CccEEECCcccCCCccccCCCC----C-CCccCCCCcEEEEEEeCC-CCcceEEec
Confidence 58999999999999999864 3 33555555554 34799753 2 347999999999999853 379999988
Q ss_pred EecCCCCCCCCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCcccccccccccccCCCCCCCCccceEEEEEeeeeccC---
Q 012467 193 GVRGRKPATPPALTLLNYHPTSASKIPLSPPPITPRWDDYDHSKSFSNKIFALMGSPKPPTNFHRRLTLLNTQNTIN--- 269 (463)
Q Consensus 193 ~~~~~~~~~~~~~a~l~y~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~~--- 269 (463)
...... .....+-|...+.... +.|. + ..++++.+.++.....
T Consensus 130 H~~~q~--~~Gl~G~lIV~~~~~~-----~~p~-~--------------------------~~d~d~~i~l~DW~~~~~~ 175 (543)
T PLN02991 130 SLGFHK--AAGGFGAIRISSRPLI-----PVPF-P--------------------------APADDYTVLIGDWYKTNHK 175 (543)
T ss_pred Ccchhh--hCCCeeeEEEeCCccc-----Cccc-c--------------------------cccceeEEEecceecCCHH
Confidence 753221 1223444444321110 0010 0 0111111111110000
Q ss_pred -------------CeEEEEEecccCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccceEEEccCC
Q 012467 270 -------------GFTKWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLN 336 (463)
Q Consensus 270 -------------~~~~~~iNg~~~~~p~~p~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 336 (463)
......|||+.. ...+.++.|
T Consensus 176 ~~~~~~~~~~~~~~~d~~liNG~~~----------------------------------------------~~~~~v~~G 209 (543)
T PLN02991 176 DLRAQLDNGGKLPLPDGILINGRGS----------------------------------------------GATLNIEPG 209 (543)
T ss_pred HHHHHhhcCCCCCCCCEEEEccCCC----------------------------------------------CceEEECCC
Confidence 000112222210 014889999
Q ss_pred CEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCccccccCCCCCCCccceEEeCCCcEEEEEEEcCC-ce-e
Q 012467 337 TTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVADN-PG-A 414 (463)
Q Consensus 337 ~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~adn-pG-~ 414 (463)
++++|+|+|.+... .+-|++.||+|+|++. +|.+ ..|...|++.|.+|++..|.+++++ +| .
T Consensus 210 ~~yRlRiINa~~~~-----~~~~~idgH~~tVIa~-DG~~----------~~p~~~~~l~i~~GQRydvlv~a~~~~~~y 273 (543)
T PLN02991 210 KTYRLRISNVGLQN-----SLNFRIQNHTMKLVEV-EGTH----------TIQTPFSSLDVHVGQSYSVLITADQPAKDY 273 (543)
T ss_pred CEEEEEEEeccCCe-----eEEEEECCCEEEEEEe-CCcc----------ccceeeeEEEEcCCcEEEEEEECCCCCCcE
Confidence 99999999988652 6899999999999998 5544 2356789999999999999999988 56 4
Q ss_pred eee
Q 012467 415 WAF 417 (463)
Q Consensus 415 w~~ 417 (463)
|+.
T Consensus 274 ~i~ 276 (543)
T PLN02991 274 YIV 276 (543)
T ss_pred EEE
Confidence 543
No 32
>PLN02191 L-ascorbate oxidase
Probab=98.63 E-value=1.4e-06 Score=92.14 Aligned_cols=71 Identities=17% Similarity=0.278 Sum_probs=60.2
Q ss_pred EEEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCccccccCCCCCCCccceEEeCCCcEEEEEEEc
Q 012467 330 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 409 (463)
Q Consensus 330 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~a 409 (463)
++.++.|++++|+|+|.+.. ..+-|++.||+|.|++. +|.+ ..|...|++.|.+|++..|-+++
T Consensus 227 ~~~v~~G~~yRlRiINa~~~-----~~~~~~idgH~~tVIa~-DG~~----------v~P~~v~~l~i~~GqRydVlV~a 290 (574)
T PLN02191 227 TLRVEPNKTYRIRLASTTAL-----ASLNLAVQGHKLVVVEA-DGNY----------ITPFTTDDIDIYSGESYSVLLTT 290 (574)
T ss_pred EEEEcCCCEEEEEEEecCCc-----eeEEEEECCCeEEEEEc-CCee----------ccceEeeeEEEcCCCeEEEEEEC
Confidence 58999999999999998765 28999999999999998 4543 34778899999999999999999
Q ss_pred CC-ce--eee
Q 012467 410 DN-PG--AWA 416 (463)
Q Consensus 410 dn-pG--~w~ 416 (463)
+. +| .|+
T Consensus 291 ~~~~~~~y~i 300 (574)
T PLN02191 291 DQDPSQNYYI 300 (574)
T ss_pred CCCCCCCEEE
Confidence 87 54 454
No 33
>PRK10883 FtsI repressor; Provisional
Probab=98.56 E-value=4e-06 Score=86.68 Aligned_cols=74 Identities=15% Similarity=0.131 Sum_probs=59.7
Q ss_pred EEEccCCCEEEEEEEeCCCCCCCCCCCCCeee-cCCceEEEeecCCCCCccccccCCCCCCCccceEEeCCCcEEEEEEE
Q 012467 330 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHL-HGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFV 408 (463)
Q Consensus 330 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~Hl-HG~~f~vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~ 408 (463)
.+.++.+ +++|.|.|.+... ..-|++ +||.|+||+...|.. ..|...|.+.+.+|+.+.|-++
T Consensus 221 ~~~v~~~-~~RlRliNas~~~-----~~~l~l~d~~~~~vIa~DGg~~----------~~P~~~~~l~l~pGeR~dvlVd 284 (471)
T PRK10883 221 YVEVSRG-WVRLRLLNASNAR-----RYQLQMSDGRPLHVIAGDQGFL----------PAPVSVKQLSLAPGERREILVD 284 (471)
T ss_pred eEEecCC-EEEEEEEEccCCc-----eEEEEEcCCCeEEEEEeCCCcc----------cCCcEeCeEEECCCCeEEEEEE
Confidence 3677765 7899999988642 677888 899999999854443 3466779999999999999999
Q ss_pred cCCceeeeecc
Q 012467 409 ADNPGAWAFHC 419 (463)
Q Consensus 409 adnpG~w~~HC 419 (463)
+++.+.+.+++
T Consensus 285 ~~~~~~~~l~~ 295 (471)
T PRK10883 285 MSNGDEVSITA 295 (471)
T ss_pred CCCCceEEEEC
Confidence 98878888887
No 34
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=98.47 E-value=1.8e-05 Score=83.47 Aligned_cols=71 Identities=11% Similarity=0.148 Sum_probs=61.2
Q ss_pred EEEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCccccccCCCCCCCccceEEeCCCcEEEEEEEc
Q 012467 330 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 409 (463)
Q Consensus 330 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~a 409 (463)
++.++.|++++|.|+|.+... ..-|++-||+|.|++. +|.+ ..|...|++.|.+|++..|-+++
T Consensus 218 ~i~V~~Gk~yRlRiINaa~~~-----~~~fsIdgH~mtVIa~-DG~~----------v~P~~vd~i~I~~GQRydVLV~a 281 (596)
T PLN00044 218 RINVDPGKTYRFRVHNVGVAT-----SLNFRIQGHNLLLVEA-EGSY----------TSQQNYTNLDIHVGQSYSFLLTM 281 (596)
T ss_pred eEEECCCCEEEEEEEEccCCc-----eEEEEECCCEEEEEEe-CCcc----------cCceeeeeEEEcCCceEEEEEEC
Confidence 589999999999999987652 7889999999999998 5654 35778899999999999999999
Q ss_pred CCc-e--eee
Q 012467 410 DNP-G--AWA 416 (463)
Q Consensus 410 dnp-G--~w~ 416 (463)
+.+ | .|+
T Consensus 282 ~q~~~~~Y~i 291 (596)
T PLN00044 282 DQNASTDYYV 291 (596)
T ss_pred CCCCCCceEE
Confidence 974 5 576
No 35
>PRK10965 multicopper oxidase; Provisional
Probab=98.38 E-value=4.2e-05 Score=80.04 Aligned_cols=216 Identities=15% Similarity=0.126 Sum_probs=118.7
Q ss_pred eEEEecCCCeEEEEEEecCcceEEEEEEeCceeEEEEeCCcccceeeEeeEEecCCceEEEEEecCCCCCCceEEEEEec
Q 012467 116 QILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVR 195 (463)
Q Consensus 116 ~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~P~~~~~l~i~~GeR~dvlV~~~~~~~g~y~ir~~~~ 195 (463)
|+|.+++|+++++++.|--. ....++.+|-.+. -+.||++ ...|.||++++..+++++ .+|+||......
T Consensus 77 PtIr~~~Gd~v~v~~~N~L~-~~ttiHwHGl~~~-~~~DG~p-------q~~I~PG~s~~Y~f~~~q-~aGT~WYH~H~~ 146 (523)
T PRK10965 77 PAVRLQRGKAVTVDITNQLP-EETTLHWHGLEVP-GEVDGGP-------QGIIAPGGKRTVTFTVDQ-PAATCWFHPHQH 146 (523)
T ss_pred ceEEEECCCEEEEEEEECCC-CCccEEcccccCC-CccCCCC-------CCCCCCCCEEEEEeccCC-CCceEEEecCCC
Confidence 68999999999999999753 3345555554332 1478875 235789999999999887 579999987643
Q ss_pred CCC-CC-CCCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCcccccccccccccCCCCCCCCccceEEEEEeee-eccCC--
Q 012467 196 GRK-PA-TPPALTLLNYHPTSASKIPLSPPPITPRWDDYDHSKSFSNKIFALMGSPKPPTNFHRRLTLLNTQ-NTING-- 270 (463)
Q Consensus 196 ~~~-~~-~~~~~a~l~y~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~-~~~~~-- 270 (463)
... .+ .....+.|.+++.... ....|. .+.... ...-+....- . .+..+.+.... ....+
T Consensus 147 g~t~~Qv~~GL~G~lIV~d~~~~---~~~lp~--~~~~~d----~~lvlqD~~~-~-----~~g~~~~~~~~~~~~~g~~ 211 (523)
T PRK10965 147 GKTGRQVAMGLAGLVLIEDDESL---KLGLPK--QWGVDD----IPVILQDKRF-S-----ADGQIDYQLDVMTAAVGWF 211 (523)
T ss_pred CCcHHHHhCcCeEEEEEcCcccc---ccCCcc--cCCCce----eeEEEEeeee-C-----CCCceeccccccccccCcc
Confidence 221 12 2233444545432110 000110 010000 0000000000 0 00000000000 00000
Q ss_pred eEEEEEecccCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccceEEEccCCCEEEEEEEeCCCCC
Q 012467 271 FTKWAINNVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIR 350 (463)
Q Consensus 271 ~~~~~iNg~~~~~p~~p~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~vl~N~~~~~ 350 (463)
.....|||..+ | .+.++ +++++|.|.|.+...
T Consensus 212 gd~~lVNG~~~------------------------p-----------------------~~~v~-~~~~RlRliNas~~r 243 (523)
T PRK10965 212 GDTLLTNGAIY------------------------P-----------------------QHAAP-RGWLRLRLLNGCNAR 243 (523)
T ss_pred CCeEEECCccc------------------------c-----------------------eeecC-CCEEEEEEEeccCCc
Confidence 01123333321 0 13444 569999999987531
Q ss_pred CCCCCCCCeee-cCCceEEEeecCCCCCccccccCCCCCCCccceEEeCCCcEEEEEEEcCCceeeeecc
Q 012467 351 PNLSEIHPWHL-HGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVADNPGAWAFHC 419 (463)
Q Consensus 351 ~~~~~~HP~Hl-HG~~f~vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~adnpG~w~~HC 419 (463)
..-+.+ .||.|+||+.. |.+ +..|...|.+.|.+|+.+.|.+++++.|.+.+..
T Consensus 244 -----~~~l~~~dg~~~~vIa~D-G~~---------l~~P~~v~~l~lapGeR~dvlv~~~~~~~~~l~~ 298 (523)
T PRK10965 244 -----SLNLATSDGRPLYVIASD-GGL---------LAEPVKVSELPILMGERFEVLVDTSDGKAFDLVT 298 (523)
T ss_pred -----eEEEEEcCCceEEEEEeC-CCc---------ccCccEeCeEEECccceEEEEEEcCCCceEEEEE
Confidence 233444 68999999984 433 2456778999999999999999998888777655
No 36
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=98.34 E-value=1.2e-06 Score=77.38 Aligned_cols=89 Identities=20% Similarity=0.224 Sum_probs=74.1
Q ss_pred EEEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCccccccCCCCCCCccceEEeCCCcEEEEEEEc
Q 012467 330 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 409 (463)
Q Consensus 330 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~a 409 (463)
++.++.|++++|.|.|.+.. ..+.|++.||+|+|++. +|.+ ..|...|++.|.+|+.+.|.+++
T Consensus 61 ~~~v~~g~~~rlRliNa~~~-----~~~~~~i~gh~~~Via~-DG~~----------v~p~~~~~l~l~~G~R~dvlv~~ 124 (159)
T PF00394_consen 61 VIKVKPGERYRLRLINAGAS-----TSFNFSIDGHPMTVIAA-DGVP----------VEPYKVDTLVLAPGQRYDVLVTA 124 (159)
T ss_dssp EEEEETTTEEEEEEEEESSS------BEEEEETTBCEEEEEE-TTEE----------EEEEEESBEEE-TTEEEEEEEEE
T ss_pred eEEEcCCcEEEEEEEeccCC-----eeEEEEeeccceeEeee-cccc----------ccccccceEEeeCCeEEEEEEEe
Confidence 69999999999999998765 27999999999999998 4543 22678899999999999999999
Q ss_pred CC-ceeeeecc----cchHhHHccceeeee
Q 012467 410 DN-PGAWAFHC----HIEPHFHIGMGVVLA 434 (463)
Q Consensus 410 dn-pG~w~~HC----Hi~~H~~~GM~~~~~ 434 (463)
+. +|.|.+++ +...+...|+..-++
T Consensus 125 ~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL 154 (159)
T PF00394_consen 125 DQPPGNYWIRASYQHDSINDPQNGNALAIL 154 (159)
T ss_dssp CSCSSEEEEEEEESSSSSHSHGGGTTEEEE
T ss_pred CCCCCeEEEEEecccCCCccCCCcEEEEEE
Confidence 98 99999999 666777777765553
No 37
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=98.12 E-value=1.4e-05 Score=69.20 Aligned_cols=87 Identities=16% Similarity=0.223 Sum_probs=57.8
Q ss_pred EEEccCCCEEEEEEEeCCC-CCCCCCCCCCeeecCCceEE--EeecCCCCCccccccCCCCCCCccceEEeCC---C--c
Q 012467 330 VYMLGLNTTVDVILQNANA-IRPNLSEIHPWHLHGHDFWV--LGRGEGKFTKEDEKKFNLKNPPLKNTAVIFP---Y--G 401 (463)
Q Consensus 330 ~~~~~~g~~v~~vl~N~~~-~~~~~~~~HP~HlHG~~f~v--l~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~---~--g 401 (463)
.+.++.|+.|++++.|.+. . .|.|-||.+.-.. ....+|. +..-..-.+|+ | +
T Consensus 53 ~I~v~~Gd~V~v~v~N~~~~~------~H~~~I~~~g~~~~~~p~mdG~-------------~~~~~~~i~p~~~~g~~~ 113 (148)
T TIGR03095 53 TIVIPEGVTVHFTVINTDTDS------GHNFDISKRGPPYPYMPGMDGL-------------GFVAGTGFLPPPKSGKFG 113 (148)
T ss_pred EEEEcCCCEEEEEEEeCCCCc------cccEEeecCCCccccccccCCC-------------CccccCcccCCCCCCccc
Confidence 4899999999999999864 3 6777776432211 0000110 11111222222 2 2
Q ss_pred EEEEEEEcCCceeeeecccchHhHHccceeeeec
Q 012467 402 WTALRFVADNPGAWAFHCHIEPHFHIGMGVVLAL 435 (463)
Q Consensus 402 ~~~irf~adnpG~w~~HCHi~~H~~~GM~~~~~~ 435 (463)
+..+.|+++.+|.+.||||+..|...||.+.+.+
T Consensus 114 ~~~~tf~f~~aGtywyhC~~pgH~~~GM~G~iiV 147 (148)
T TIGR03095 114 YTDFTYHFSTAGTYWYLCTYPGHAENGMYGKIVV 147 (148)
T ss_pred eeEEEEECCCCeEEEEEcCChhHHHCCCEEEEEE
Confidence 4678899899999999999999999999988864
No 38
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=97.99 E-value=6.7e-05 Score=64.36 Aligned_cols=75 Identities=9% Similarity=0.161 Sum_probs=66.2
Q ss_pred eEEEecCCCeEEEEEEecCcceEEEEEEeCceeEEEEeCCccc-----------ceeeEeeEEecCCceEEEEEecCCCC
Q 012467 116 QILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYV-----------QPFEVDDMDIYSGESYSVLLTTNQDP 184 (463)
Q Consensus 116 ~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v-----------~P~~~~~l~i~~GeR~dvlV~~~~~~ 184 (463)
..+.++.|+.++|+|+|.+.. .+.|+++|+.|+|++.++... .|...|++.|.+|++..+.++++.
T Consensus 34 ~~~~~~~g~~v~~~l~N~~~~-~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~~-- 110 (138)
T PF07731_consen 34 PVIEVKNGDVVEIVLQNNGSM-PHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRADN-- 110 (138)
T ss_dssp SEEEEETTSEEEEEEEECTTS-SEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEETS--
T ss_pred ceEEEeCCCEEEEEEECCCCC-ccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEeec--
Confidence 478999999999999997754 899999999999999999984 577899999999999999999974
Q ss_pred CCceEEEEE
Q 012467 185 SYNYWISAG 193 (463)
Q Consensus 185 ~g~y~ir~~ 193 (463)
+|.|-+.-.
T Consensus 111 ~G~w~~HCH 119 (138)
T PF07731_consen 111 PGPWLFHCH 119 (138)
T ss_dssp TEEEEEEES
T ss_pred ceEEEEEEc
Confidence 688777643
No 39
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.89 E-value=0.0014 Score=68.78 Aligned_cols=223 Identities=15% Similarity=0.213 Sum_probs=129.3
Q ss_pred eEEEecCCCeEEEEEEecCcceEEEEEEeCce-eEEEEeCCcccceeeEeeEEecCCceEEEEEecCCCCCCceEEEEEe
Q 012467 116 QILHVQPNKTYRLRIASTTALASLNLAVKNHK-MVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGV 194 (463)
Q Consensus 116 ~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~-~~via~DG~~v~P~~~~~l~i~~GeR~dvlV~~~~~~~g~y~ir~~~ 194 (463)
|.|.++.|.++.++++|-. ...+.++-.|-. ..---.||.++ ..=.|.|||.|-.-++++. ..|+||-.+..
T Consensus 59 P~I~~~~gD~ivV~v~N~~-~~~~sihWhGv~q~kn~w~DG~~~-----TqCPI~Pg~~~tY~F~v~~-q~GT~~yh~h~ 131 (563)
T KOG1263|consen 59 PTINAEEGDTIVVNVVNRL-DEPFSIHWHGVRQRKNPWQDGVYI-----TQCPIQPGENFTYRFTVKD-QIGTLWYHSHV 131 (563)
T ss_pred CeEEEEeCCEEEEEEEeCC-CCceEEEeccccccCCccccCCcc-----ccCCcCCCCeEEEEEEeCC-cceeEEEeecc
Confidence 5899999999999999994 466666666643 23345599543 3335789999999999986 47899888765
Q ss_pred cCCCCCCCCeEEEEEeCCCCCCCCCCCCCCCCCCCCCCcccccccccccccCCCCCCCCccceEEEEEeeeeccCCeEEE
Q 012467 195 RGRKPATPPALTLLNYHPTSASKIPLSPPPITPRWDDYDHSKSFSNKIFALMGSPKPPTNFHRRLTLLNTQNTINGFTKW 274 (463)
Q Consensus 195 ~~~~~~~~~~~a~l~y~~~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~~~~~~~ 274 (463)
.... .....+-|........ + .+. ...++++.+.++. |
T Consensus 132 ~~~R--a~G~~G~liI~~~~~~--p-~pf-----------------------------~~pd~E~~ill~d--------W 169 (563)
T KOG1263|consen 132 SWQR--ATGVFGALIINPRPGL--P-VPF-----------------------------PKPDKEFTILLGD--------W 169 (563)
T ss_pred cccc--ccCceeEEEEcCCccC--C-CCC-----------------------------CCCCceeEEEeEe--------e
Confidence 4332 1223444443311100 0 000 0224444444432 2
Q ss_pred EEe--cccCCCCCCCCccccccCCCCCCCCCCCCCCCCCCcccCCCCCCCCccccceEEEccCCCEEEEEEEeCCCCCCC
Q 012467 275 AIN--NVSLTLPPTPYLGSIKYGLKDAFDQNGPPENFSNEYDVMKPPVNANTTLGSGVYMLGLNTTVDVILQNANAIRPN 352 (463)
Q Consensus 275 ~iN--g~~~~~p~~p~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~vl~N~~~~~~~ 352 (463)
.-+ ...+.. ... ..+.. +.. | +.+.+.+.+. ....|...+.+..|+++.|+|.|.+..
T Consensus 170 ~~~~~~~~l~~-------~~~--~~~~~-p~~-~----D~~~iNg~~g--~~~~~~~~l~v~pGktY~lRiiN~g~~--- 229 (563)
T KOG1263|consen 170 YKNLNHKNLKN-------FLD--RTGAL-PNP-S----DGVLINGRSG--FLYNCTPTLTVEPGKTYRLRIINAGLN--- 229 (563)
T ss_pred ccccCHHHHHH-------hhc--cCCCC-CCC-C----CceEECCCCC--cccCceeEEEEcCCCEEEEEEEccccc---
Confidence 221 100000 000 00000 000 0 0000000000 001123468999999999999998765
Q ss_pred CCCCCCeeecCCceEEEeecCCCCCccccccCCCCCCCccceEEeCCCcEEEEEEEcCC-ce-eeeeccc
Q 012467 353 LSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVADN-PG-AWAFHCH 420 (463)
Q Consensus 353 ~~~~HP~HlHG~~f~vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~adn-pG-~w~~HCH 420 (463)
...+ |.+-||.+.|+.. +|.+ ..|.--|++.|-+|.+..+-.+||. ++ .|+.=|=
T Consensus 230 -~~l~-F~I~~H~ltvVe~-Dg~y----------~~p~~~~~l~i~~GQ~~~vLvtadq~~~~Y~i~~~~ 286 (563)
T KOG1263|consen 230 -TSLN-FSIANHQLTVVEV-DGAY----------TKPFTTDSLDIHPGQTYSVLLTADQSPGDYYIAASP 286 (563)
T ss_pred -cceE-EEECCeEEEEEEe-cceE----------EeeeeeceEEEcCCcEEEEEEeCCCCCCcEEEEEEe
Confidence 2255 9999999999998 5554 3456779999999999999999997 55 4655443
No 40
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=97.76 E-value=0.00011 Score=59.25 Aligned_cols=81 Identities=17% Similarity=0.215 Sum_probs=57.7
Q ss_pred EEEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCccccccCCCCCCCccceEEeCCCcEEEEEEEc
Q 012467 330 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 409 (463)
Q Consensus 330 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~a 409 (463)
.+.++.|++|+|+ |.+.. .|-+.++...+..-.. .+ ......+++.+.||+...+.|..
T Consensus 18 ~i~v~~G~~V~~~--N~~~~------~H~~~~~~~~~~~~~~---~~----------~~~~~~~~~~~~pG~t~~~tF~~ 76 (99)
T TIGR02656 18 KISIAAGDTVEWV--NNKGG------PHNVVFDEDAVPAGVK---EL----------AKSLSHKDLLNSPGESYEVTFST 76 (99)
T ss_pred EEEECCCCEEEEE--ECCCC------CceEEECCCCCccchh---hh----------cccccccccccCCCCEEEEEeCC
Confidence 3899999999887 65545 7888776543221110 00 00122467888999999888876
Q ss_pred CCceeeeecccchHhHHccceeeeec
Q 012467 410 DNPGAWAFHCHIEPHFHIGMGVVLAL 435 (463)
Q Consensus 410 dnpG~w~~HCHi~~H~~~GM~~~~~~ 435 (463)
||.|.|+|- .|..+||.+.+.+
T Consensus 77 --~G~y~y~C~--~H~~aGM~G~I~V 98 (99)
T TIGR02656 77 --PGTYTFYCE--PHRGAGMVGKITV 98 (99)
T ss_pred --CEEEEEEcC--CccccCCEEEEEE
Confidence 999999998 8999999988864
No 41
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=97.52 E-value=0.00042 Score=58.20 Aligned_cols=58 Identities=22% Similarity=0.394 Sum_probs=48.8
Q ss_pred EEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCccccccCCCCCCCccceEEeCCCcEEEEEEEcC
Q 012467 331 YMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVAD 410 (463)
Q Consensus 331 ~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~ad 410 (463)
+.++.|+.|+|++.|.+.. .|.|-++++.+ ...|++|+...|+|.++
T Consensus 63 I~VkaGD~Vtl~vtN~d~~------~H~f~i~~~gi---------------------------s~~I~pGet~TitF~ad 109 (135)
T TIGR03096 63 LVVKKGTPVKVTVENKSPI------SEGFSIDAYGI---------------------------SEVIKAGETKTISFKAD 109 (135)
T ss_pred EEECCCCEEEEEEEeCCCC------ccceEECCCCc---------------------------ceEECCCCeEEEEEECC
Confidence 8999999999999998866 78777766421 24677899999999999
Q ss_pred Cceeeeecccc
Q 012467 411 NPGAWAFHCHI 421 (463)
Q Consensus 411 npG~w~~HCHi 421 (463)
.||.+-|||-+
T Consensus 110 KpG~Y~y~C~~ 120 (135)
T TIGR03096 110 KAGAFTIWCQL 120 (135)
T ss_pred CCEEEEEeCCC
Confidence 99999999974
No 42
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.41 E-value=0.017 Score=59.94 Aligned_cols=75 Identities=16% Similarity=0.103 Sum_probs=58.4
Q ss_pred EEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCccccccCCCCCCCccceEEeCCCcEEEEEEEcC
Q 012467 331 YMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVAD 410 (463)
Q Consensus 331 ~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~ad 410 (463)
+....+.++++.|.|.+.. ...=+++.|++++|++...+... +...|.+.+-+++...|..++.
T Consensus 201 ~~~~~~g~~rlRl~n~~~~-----~~~~~~~~~~~~~Vi~~DG~~v~-----------~~~~d~~~l~p~er~~v~v~~~ 264 (451)
T COG2132 201 FKAVPGGVVRLRLLNAGNA-----RTYHLALGGGPLTVIAVDGGPLP-----------PVSVDELYLAPGERYEVLVDMN 264 (451)
T ss_pred eeecCCCeEEEEEEecCCc-----eEEEEEecCceEEEEEeCCcCcC-----------ceeeeeEEecCcceEEEEEEcC
Confidence 3344555699999998833 15666667999999998543321 2467999999999999999999
Q ss_pred Cceeeeecccc
Q 012467 411 NPGAWAFHCHI 421 (463)
Q Consensus 411 npG~w~~HCHi 421 (463)
+.|.+.+.|.-
T Consensus 265 ~~~~~~l~~~~ 275 (451)
T COG2132 265 DGGAVTLTALG 275 (451)
T ss_pred CCCeEEEEecc
Confidence 99999999987
No 43
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=97.04 E-value=0.0028 Score=51.48 Aligned_cols=67 Identities=18% Similarity=0.320 Sum_probs=43.8
Q ss_pred EEEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCccccccCCCCCCCccceEEeCCCcEEEEEEEc
Q 012467 330 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 409 (463)
Q Consensus 330 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~a 409 (463)
.+.++.|+.+.+++.|.+.. .|-|.+.+. .-...|++|+...+.|.+
T Consensus 36 ~i~v~~G~~v~l~~~N~~~~------~h~~~i~~~---------------------------~~~~~l~~g~~~~~~f~~ 82 (104)
T PF13473_consen 36 TITVKAGQPVTLTFTNNDSR------PHEFVIPDL---------------------------GISKVLPPGETATVTFTP 82 (104)
T ss_dssp EEEEETTCEEEEEEEE-SSS-------EEEEEGGG---------------------------TEEEEE-TT-EEEEEEEE
T ss_pred EEEEcCCCeEEEEEEECCCC------cEEEEECCC---------------------------ceEEEECCCCEEEEEEcC
Confidence 48999999999999999865 555444441 122678899999999999
Q ss_pred CCceeeeecccchHhHHccce
Q 012467 410 DNPGAWAFHCHIEPHFHIGMG 430 (463)
Q Consensus 410 dnpG~w~~HCHi~~H~~~GM~ 430 (463)
+.||.+-|+|-+-.+ +.|..
T Consensus 83 ~~~G~y~~~C~~~~~-m~G~l 102 (104)
T PF13473_consen 83 LKPGEYEFYCTMHPN-MKGTL 102 (104)
T ss_dssp -S-EEEEEB-SSS-T-TB---
T ss_pred CCCEEEEEEcCCCCc-ceecc
Confidence 999999999996665 45554
No 44
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=96.47 E-value=0.017 Score=46.41 Aligned_cols=81 Identities=16% Similarity=0.301 Sum_probs=53.2
Q ss_pred EEEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCccccccCCCCCCCccceEEeCCCcEEEEEEEc
Q 012467 330 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 409 (463)
Q Consensus 330 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~a 409 (463)
.+.++.|++|.|+.. +.. .|.+.+ ... ...... +..... ..-.+..+.+|....+.|.
T Consensus 18 ~i~V~~G~tV~~~n~--~~~------~Hnv~~-------~~~-~~~~~~-~~~~~~----~~~~~~~~~~G~~~~~tF~- 75 (99)
T PF00127_consen 18 EITVKAGDTVTFVNN--DSM------PHNVVF-------VAD-GMPAGA-DSDYVP----PGDSSPLLAPGETYSVTFT- 75 (99)
T ss_dssp EEEEETTEEEEEEEE--SSS------SBEEEE-------ETT-SSHTTG-GHCHHS----TTCEEEEBSTTEEEEEEEE-
T ss_pred EEEECCCCEEEEEEC--CCC------CceEEE-------ecc-cccccc-cccccC----ccccceecCCCCEEEEEeC-
Confidence 489999999998765 333 565443 221 100000 000000 1116677889999888888
Q ss_pred CCceeeeecccchHhHHccceeeeec
Q 012467 410 DNPGAWAFHCHIEPHFHIGMGVVLAL 435 (463)
Q Consensus 410 dnpG~w~~HCHi~~H~~~GM~~~~~~ 435 (463)
.+|.+.|+|- - |...||-+.+.+
T Consensus 76 -~~G~y~y~C~-P-H~~~GM~G~i~V 98 (99)
T PF00127_consen 76 -KPGTYEYYCT-P-HYEAGMVGTIIV 98 (99)
T ss_dssp -SSEEEEEEET-T-TGGTTSEEEEEE
T ss_pred -CCeEEEEEcC-C-CcccCCEEEEEE
Confidence 9999999999 4 999999988864
No 45
>PRK02888 nitrous-oxide reductase; Validated
Probab=96.39 E-value=0.012 Score=61.91 Aligned_cols=75 Identities=19% Similarity=0.352 Sum_probs=53.5
Q ss_pred EEEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCccccccCCCCCCCccceEEeCCCcEEEEEEEc
Q 012467 330 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 409 (463)
Q Consensus 330 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~a 409 (463)
.+.++.|+.|.|+|.|.+... ...|-|.+-++.. -+.+.||....+.|++
T Consensus 556 ~i~Vk~GDeVt~~lTN~d~~~---DViHGF~Ip~~nI---------------------------~~dv~PG~t~svtF~a 605 (635)
T PRK02888 556 EFTVKQGDEVTVIVTNLDKVE---DLTHGFAIPNYGV---------------------------NMEVAPQATASVTFTA 605 (635)
T ss_pred eEEecCCCEEEEEEEeCCccc---ccccceeecccCc---------------------------cEEEcCCceEEEEEEc
Confidence 477899999999999964310 1156655533321 1356689999999999
Q ss_pred CCceeeeecccc---hHhHHccceeeeecc
Q 012467 410 DNPGAWAFHCHI---EPHFHIGMGVVLALG 436 (463)
Q Consensus 410 dnpG~w~~HCHi---~~H~~~GM~~~~~~~ 436 (463)
+.||.|.+||.. ..|. +|...+.+.
T Consensus 606 dkPGvy~~~CtefCGa~H~--~M~G~~iVe 633 (635)
T PRK02888 606 DKPGVYWYYCTWFCHALHM--EMRGRMLVE 633 (635)
T ss_pred CCCEEEEEECCcccccCcc--cceEEEEEE
Confidence 999999999987 4443 777766553
No 46
>PRK02710 plastocyanin; Provisional
Probab=96.28 E-value=0.016 Score=48.20 Aligned_cols=70 Identities=20% Similarity=0.272 Sum_probs=50.9
Q ss_pred EEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCccccccCCCCCCCccceEEeCCCcEEEEEEEcC
Q 012467 331 YMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVAD 410 (463)
Q Consensus 331 ~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~ad 410 (463)
+.++.|++|+|+ |.+.. .|.+.+.+... + ..++ ..+.+|+...+.|..
T Consensus 49 i~v~~Gd~V~~~--N~~~~------~H~v~~~~~~~---------~-------------~~~~-~~~~pg~t~~~tF~~- 96 (119)
T PRK02710 49 LTIKAGDTVKWV--NNKLA------PHNAVFDGAKE---------L-------------SHKD-LAFAPGESWEETFSE- 96 (119)
T ss_pred EEEcCCCEEEEE--ECCCC------CceEEecCCcc---------c-------------cccc-cccCCCCEEEEEecC-
Confidence 899999999885 65544 78876543211 0 0112 346788888877776
Q ss_pred CceeeeecccchHhHHccceeeeec
Q 012467 411 NPGAWAFHCHIEPHFHIGMGVVLAL 435 (463)
Q Consensus 411 npG~w~~HCHi~~H~~~GM~~~~~~ 435 (463)
||.+.|+|= .|...||-+.+.+
T Consensus 97 -~G~y~y~C~--~H~~~gM~G~I~V 118 (119)
T PRK02710 97 -AGTYTYYCE--PHRGAGMVGKITV 118 (119)
T ss_pred -CEEEEEEcC--CCccCCcEEEEEE
Confidence 999999997 8999999988865
No 47
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=95.92 E-value=0.0086 Score=49.74 Aligned_cols=88 Identities=18% Similarity=0.206 Sum_probs=59.9
Q ss_pred eEEEecCCCeEEEEEEecCcceEEEEEEeCceeEE-EEeCCcccceeeEeeEEecCCceEEEEEecCCCCCCceEEEEEe
Q 012467 116 QILHVQPNKTYRLRIASTTALASLNLAVKNHKMVV-VEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGV 194 (463)
Q Consensus 116 ~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~v-ia~DG~~v~P~~~~~l~i~~GeR~dvlV~~~~~~~g~y~ir~~~ 194 (463)
|+|.++.|+++++++.|.. .....|+..|-.+.- -..||.+-.+ .-.|.||+++...+++++ ..|.||-....
T Consensus 26 PtI~v~~Gd~v~i~~~N~l-~~~~siH~HG~~~~~~~~~DG~~~~~----~~~i~pG~~~~Y~~~~~~-~~Gt~wYH~H~ 99 (117)
T PF07732_consen 26 PTIRVREGDTVRITVTNNL-DEPTSIHWHGLHQPPSPWMDGVPGVT----QCPIAPGESFTYEFTANQ-QAGTYWYHSHV 99 (117)
T ss_dssp EEEEEETTEEEEEEEEEES-SSGBSEEEETSBSTTGGGGSGGTTTS----GSSBSTTEEEEEEEEESS-CSEEEEEEECS
T ss_pred CEEEEEcCCeeEEEEEecc-ccccccccceeeeeeeeecCCccccc----ceeEEeecceeeeEeeec-cccceeEeeCC
Confidence 6899999999999999988 444556666533211 1267765422 245899999999999998 57999998765
Q ss_pred cCCCCCCCCeEEEEEeC
Q 012467 195 RGRKPATPPALTLLNYH 211 (463)
Q Consensus 195 ~~~~~~~~~~~a~l~y~ 211 (463)
.. .......+.|.++
T Consensus 100 ~~--~~~~GL~G~~iV~ 114 (117)
T PF07732_consen 100 HG--QQVMGLYGAIIVE 114 (117)
T ss_dssp TT--HHHTTEEEEEEEE
T ss_pred Cc--hhcCcCEEEEEEc
Confidence 44 1123344444443
No 48
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=95.79 E-value=0.02 Score=48.88 Aligned_cols=93 Identities=19% Similarity=0.233 Sum_probs=65.5
Q ss_pred EEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCccccccCCCCCCCccceEEeCCCcEEEEEEEcC
Q 012467 331 YMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVAD 410 (463)
Q Consensus 331 ~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~ad 410 (463)
..++.|++++.++.|.... .|=|-+- ++.... +.+... ....-..---..++.|.||....+-+++.
T Consensus 65 ~~v~aG~tv~~v~~n~~el------~hef~~~---~~~~~~--~~~~~~--~~~~Dme~d~~~~v~L~PG~s~elvv~ft 131 (158)
T COG4454 65 FEVKAGETVRFVLKNEGEL------KHEFTMD---APDKNL--EHVTHM--ILADDMEHDDPNTVTLAPGKSGELVVVFT 131 (158)
T ss_pred ccccCCcEEeeeecCcccc------eEEEecc---Cccccc--hhHHHh--hhCCccccCCcceeEeCCCCcEEEEEEec
Confidence 7789999999999998876 5554443 111111 111100 00000111235789999999999999999
Q ss_pred CceeeeecccchHhHHccceeeeecc
Q 012467 411 NPGAWAFHCHIEPHFHIGMGVVLALG 436 (463)
Q Consensus 411 npG~w~~HCHi~~H~~~GM~~~~~~~ 436 (463)
++|.+-|-|-|-+|.+.||-+.|.+.
T Consensus 132 ~~g~ye~~C~iPGHy~AGM~g~itV~ 157 (158)
T COG4454 132 GAGKYEFACNIPGHYEAGMVGEITVS 157 (158)
T ss_pred CCccEEEEecCCCcccCCcEEEEEeC
Confidence 99999999999999999999988654
No 49
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=95.71 E-value=0.044 Score=46.17 Aligned_cols=60 Identities=13% Similarity=0.221 Sum_probs=47.7
Q ss_pred CceEEEecCCCeEEEEEEecCcceEEEEEEeCceeEEEEeCCcccceeeEeeEEecCCceEEEEEecCCCCCCceEEEE
Q 012467 114 APQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISA 192 (463)
Q Consensus 114 ~~~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~P~~~~~l~i~~GeR~dvlV~~~~~~~g~y~ir~ 192 (463)
.|..|+|++|.+++|++.|... ....+.++++. -...|.|||+..+-+++++ +|.|+..-
T Consensus 59 ~P~~I~VkaGD~Vtl~vtN~d~-~~H~f~i~~~g----------------is~~I~pGet~TitF~adK--pG~Y~y~C 118 (135)
T TIGR03096 59 EPEALVVKKGTPVKVTVENKSP-ISEGFSIDAYG----------------ISEVIKAGETKTISFKADK--AGAFTIWC 118 (135)
T ss_pred cCCEEEECCCCEEEEEEEeCCC-CccceEECCCC----------------cceEECCCCeEEEEEECCC--CEEEEEeC
Confidence 3458999999999999999886 45666666542 1567899999999999987 79998753
No 50
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=95.62 E-value=0.068 Score=46.29 Aligned_cols=74 Identities=12% Similarity=0.029 Sum_probs=45.1
Q ss_pred EEEecCCCeEEEEEEecCcceEEEEEEeCceeEE---EEeCCcccceeeEeeEEecCCce--EEEEEecCCCCCCceEEE
Q 012467 117 ILHVQPNKTYRLRIASTTALASLNLAVKNHKMVV---VEADGNYVQPFEVDDMDIYSGES--YSVLLTTNQDPSYNYWIS 191 (463)
Q Consensus 117 ~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~v---ia~DG~~v~P~~~~~l~i~~GeR--~dvlV~~~~~~~g~y~ir 191 (463)
.|++++|++++|++.|......+.|.|..+.... -..||.+..+.....-...+|+. .++..++++ +|.||..
T Consensus 53 ~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~~~~~tf~f~~--aGtywyh 130 (148)
T TIGR03095 53 TIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFGYTDFTYHFST--AGTYWYL 130 (148)
T ss_pred EEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCccceeEEEEECCC--CeEEEEE
Confidence 7999999999999999976445556665432211 13576543221110001123544 478888875 6999987
Q ss_pred E
Q 012467 192 A 192 (463)
Q Consensus 192 ~ 192 (463)
-
T Consensus 131 C 131 (148)
T TIGR03095 131 C 131 (148)
T ss_pred c
Confidence 4
No 51
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=94.95 E-value=0.11 Score=41.93 Aligned_cols=59 Identities=14% Similarity=0.196 Sum_probs=40.4
Q ss_pred CceEEEecCCCeEEEEEEecCcceEEEEEEeCceeEEEEeCCcccceeeEeeEEecCCceEEEEEecCCCCCCceEEE
Q 012467 114 APQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWIS 191 (463)
Q Consensus 114 ~~~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~P~~~~~l~i~~GeR~dvlV~~~~~~~g~y~ir 191 (463)
.|..+++++|+.++|.+.|.+... +.|.+++. . ....|.+|+...+.+...+ +|.|.+.
T Consensus 33 ~P~~i~v~~G~~v~l~~~N~~~~~-h~~~i~~~---------------~-~~~~l~~g~~~~~~f~~~~--~G~y~~~ 91 (104)
T PF13473_consen 33 SPSTITVKAGQPVTLTFTNNDSRP-HEFVIPDL---------------G-ISKVLPPGETATVTFTPLK--PGEYEFY 91 (104)
T ss_dssp ES-EEEEETTCEEEEEEEE-SSS--EEEEEGGG---------------T-EEEEE-TT-EEEEEEEE-S---EEEEEB
T ss_pred ecCEEEEcCCCeEEEEEEECCCCc-EEEEECCC---------------c-eEEEECCCCEEEEEEcCCC--CEEEEEE
Confidence 345899999999999999998664 66666651 1 2267889999999987775 6898764
No 52
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=93.88 E-value=0.25 Score=40.75 Aligned_cols=35 Identities=20% Similarity=0.499 Sum_probs=29.0
Q ss_pred CCcEEEEEEEcCCceeeeecccchHhHHccceeeeeccc
Q 012467 399 PYGWTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGV 437 (463)
Q Consensus 399 ~~g~~~irf~adnpG~w~~HCHi~~H~~~GM~~~~~~~~ 437 (463)
+++...+.| +.+|.+-|+|- .|...||-+.+.++.
T Consensus 54 ~g~~~~~tF--~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~ 88 (116)
T TIGR02375 54 INEEYTVTV--TEEGVYGVKCT--PHYGMGMVALIQVGD 88 (116)
T ss_pred CCCEEEEEe--CCCEEEEEEcC--CCccCCCEEEEEECC
Confidence 455555555 68999999998 999999999998876
No 53
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=93.09 E-value=0.53 Score=38.79 Aligned_cols=72 Identities=21% Similarity=0.259 Sum_probs=47.9
Q ss_pred EEEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCccccccCCCCCCCccceEEeCCCcEEEEEEEc
Q 012467 330 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 409 (463)
Q Consensus 330 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~a 409 (463)
.+.++.|++|.|+-++.. . .|-.. +.+.+.|+. ......+|+...+.|
T Consensus 43 ~ltV~~GdTVtw~~~~d~-~------~HnV~---------s~~~~~f~s--------------~~~~~~~G~t~s~Tf-- 90 (115)
T TIGR03102 43 AIRVDPGTTVVWEWTGEG-G------GHNVV---------SDGDGDLDE--------------SERVSEEGTTYEHTF-- 90 (115)
T ss_pred EEEECCCCEEEEEECCCC-C------CEEEE---------ECCCCCccc--------------cccccCCCCEEEEEe--
Confidence 389999999999754322 2 45532 222233320 112334677766666
Q ss_pred CCceeeeecccchHhHHccceeeeec
Q 012467 410 DNPGAWAFHCHIEPHFHIGMGVVLAL 435 (463)
Q Consensus 410 dnpG~w~~HCHi~~H~~~GM~~~~~~ 435 (463)
+.||.+.|+|- .|...||-+.+.+
T Consensus 91 ~~~G~Y~Y~C~--pH~~~gM~G~I~V 114 (115)
T TIGR03102 91 EEPGIYLYVCV--PHEALGMKGAVVV 114 (115)
T ss_pred cCCcEEEEEcc--CCCCCCCEEEEEE
Confidence 68999999998 8999999988865
No 54
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=92.81 E-value=0.58 Score=36.06 Aligned_cols=71 Identities=21% Similarity=0.267 Sum_probs=44.1
Q ss_pred EEEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCccccccCCCCCCCccceEEeCCCcEEEEEEEc
Q 012467 330 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 409 (463)
Q Consensus 330 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~a 409 (463)
.+.++.|++|.|+ |.+.. .|-++++...+ +.. .+.. ..+.+|.... +++
T Consensus 12 ~i~v~~GdtVt~~--N~d~~------~Hnv~~~~g~~-------~~~-------------~~~~-~~~~~g~~~~--~tf 60 (83)
T TIGR02657 12 ELHVKVGDTVTWI--NREAM------PHNVHFVAGVL-------GEA-------------ALKG-PMMKKEQAYS--LTF 60 (83)
T ss_pred EEEECCCCEEEEE--ECCCC------CccEEecCCCC-------ccc-------------cccc-cccCCCCEEE--EEC
Confidence 4899999999884 66555 78887654221 000 1111 1234566555 455
Q ss_pred CCceeeeecccchHhHHccceeeeec
Q 012467 410 DNPGAWAFHCHIEPHFHIGMGVVLAL 435 (463)
Q Consensus 410 dnpG~w~~HCHi~~H~~~GM~~~~~~ 435 (463)
+.||.+.|||=+ |- +|.+.+.+
T Consensus 61 ~~~G~y~y~C~~--Hp--~M~G~v~V 82 (83)
T TIGR02657 61 TEAGTYDYHCTP--HP--FMRGKVVV 82 (83)
T ss_pred CCCEEEEEEcCC--CC--CCeEEEEE
Confidence 789999999986 44 47666543
No 55
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=92.73 E-value=0.7 Score=38.44 Aligned_cols=60 Identities=18% Similarity=0.270 Sum_probs=46.8
Q ss_pred EEEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCccccccCCCCCCCccceEEeCCCcEEEEEEEc
Q 012467 330 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 409 (463)
Q Consensus 330 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~a 409 (463)
.+.++.|+.|++.+.+.+. .|.|.+-+....+ .+.||....+.|++
T Consensus 47 ~l~lp~g~~v~~~ltS~DV-------iHsf~ip~~~~k~---------------------------d~~PG~~~~~~~~~ 92 (120)
T PF00116_consen 47 ELVLPAGQPVRFHLTSEDV-------IHSFWIPELGIKM---------------------------DAIPGRTNSVTFTP 92 (120)
T ss_dssp EEEEETTSEEEEEEEESSS--------EEEEETTCTEEE---------------------------EEBTTCEEEEEEEE
T ss_pred eecccccceEeEEEEcCCc-------cccccccccCccc---------------------------ccccccceeeeeee
Confidence 4899999999999999876 4777666544332 34578999999999
Q ss_pred CCceeeeecccchH
Q 012467 410 DNPGAWAFHCHIEP 423 (463)
Q Consensus 410 dnpG~w~~HCHi~~ 423 (463)
+.||.+...|...=
T Consensus 93 ~~~G~y~~~C~e~C 106 (120)
T PF00116_consen 93 DKPGTYYGQCAEYC 106 (120)
T ss_dssp SSSEEEEEEE-SSS
T ss_pred ccCCcEEEcCcccc
Confidence 99999999998543
No 56
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=91.50 E-value=0.81 Score=35.26 Aligned_cols=31 Identities=19% Similarity=0.190 Sum_probs=21.7
Q ss_pred eEeeEEecCCceEEEEEecCCCC--CCceEEEE
Q 012467 162 EVDDMDIYSGESYSVLLTTNQDP--SYNYWISA 192 (463)
Q Consensus 162 ~~~~l~i~~GeR~dvlV~~~~~~--~g~y~ir~ 192 (463)
......|.|||...+-.+.+... +|.|.+.|
T Consensus 50 al~~~~l~pGe~~~~~~~~~~~~~~~G~Y~~~a 82 (82)
T PF12690_consen 50 ALQEETLEPGESLTYEETWDLKDLSPGEYTLEA 82 (82)
T ss_dssp --EEEEE-TT-EEEEEEEESS----SEEEEEEE
T ss_pred eeeEEEECCCCEEEEEEEECCCCCCCceEEEeC
Confidence 45678999999999999988754 79998864
No 57
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=89.95 E-value=3 Score=37.53 Aligned_cols=96 Identities=16% Similarity=0.108 Sum_probs=60.1
Q ss_pred eEEEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcc----ccccCC--CCCCCccceEEeCCCcE
Q 012467 329 GVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKE----DEKKFN--LKNPPLKNTAVIFPYGW 402 (463)
Q Consensus 329 ~~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~----~~~~~n--~~~p~~rDTv~v~~~g~ 402 (463)
..+.++.|-.|.+++.|.+.+ .| .|-|+..+....+.. |.+-+. ...+.--..--+.+|..
T Consensus 86 m~i~VPAGw~V~i~f~N~~~l------~H-------nl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s 152 (196)
T PF06525_consen 86 MTIYVPAGWNVQITFTNQESL------PH-------NLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQS 152 (196)
T ss_pred EEEEEcCCCEEEEEEEcCCCC------Ce-------eEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCce
Confidence 358899999999999998876 55 466775432211110 111000 00000000112335566
Q ss_pred EEEEEEcCCceeeeecccchHhHHccceeeeeccc
Q 012467 403 TALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGV 437 (463)
Q Consensus 403 ~~irf~adnpG~w~~HCHi~~H~~~GM~~~~~~~~ 437 (463)
...-+..-.||.+.|=|-+.-|...||-..+.+..
T Consensus 153 ~~~~~~~l~aG~YwlvC~ipGHA~sGMw~~LiVs~ 187 (196)
T PF06525_consen 153 ASGVYNDLPAGYYWLVCGIPGHAESGMWGVLIVSS 187 (196)
T ss_pred eeEEEccCCCceEEEEccCCChhhcCCEEEEEEec
Confidence 65556666799999999999999999999997654
No 58
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=89.51 E-value=1.4 Score=39.54 Aligned_cols=73 Identities=21% Similarity=0.319 Sum_probs=48.6
Q ss_pred eEEEecCCCeEEEEEEecCcceEEEEEEe--Cc---eeEEEEeCCcccc-----eeeEeeEEecCCceEEEEEecCCCCC
Q 012467 116 QILHVQPNKTYRLRIASTTALASLNLAVK--NH---KMVVVEADGNYVQ-----PFEVDDMDIYSGESYSVLLTTNQDPS 185 (463)
Q Consensus 116 ~~~~v~~g~~~RlRliNa~~~~~~~~~i~--~h---~~~via~DG~~v~-----P~~~~~l~i~~GeR~dvlV~~~~~~~ 185 (463)
.+|.|.+|-++.++++|.+.. .+.|-|- +. ..-.|..||..+. +-....--|.+||++..+.... ++
T Consensus 86 m~i~VPAGw~V~i~f~N~~~l-~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~~~l--~a 162 (196)
T PF06525_consen 86 MTIYVPAGWNVQITFTNQESL-PHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVYNDL--PA 162 (196)
T ss_pred EEEEEcCCCEEEEEEEcCCCC-CeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEEccC--CC
Confidence 589999999999999998754 4444442 21 2346778886551 2222233567999998776433 36
Q ss_pred CceEEE
Q 012467 186 YNYWIS 191 (463)
Q Consensus 186 g~y~ir 191 (463)
|.|||.
T Consensus 163 G~Ywlv 168 (196)
T PF06525_consen 163 GYYWLV 168 (196)
T ss_pred ceEEEE
Confidence 999995
No 59
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=88.28 E-value=1.4 Score=35.12 Aligned_cols=67 Identities=16% Similarity=0.210 Sum_probs=38.2
Q ss_pred ceEEEecCCCeEEEEEEecCcceEEEEEEeCceeEEEEeCCcccce-eeEeeEEecCCceEEEEEecCCCCCCceEEE
Q 012467 115 PQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQP-FEVDDMDIYSGESYSVLLTTNQDPSYNYWIS 191 (463)
Q Consensus 115 ~~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~P-~~~~~l~i~~GeR~dvlV~~~~~~~g~y~ir 191 (463)
|..|+|++|++++|. |.+. ..+.+.++...+..-+ ....+ ...+.+.+.||+++++-++. +|.|...
T Consensus 16 P~~i~v~~G~~V~~~--N~~~-~~H~~~~~~~~~~~~~---~~~~~~~~~~~~~~~pG~t~~~tF~~----~G~y~y~ 83 (99)
T TIGR02656 16 PAKISIAAGDTVEWV--NNKG-GPHNVVFDEDAVPAGV---KELAKSLSHKDLLNSPGESYEVTFST----PGTYTFY 83 (99)
T ss_pred CCEEEECCCCEEEEE--ECCC-CCceEEECCCCCccch---hhhcccccccccccCCCCEEEEEeCC----CEEEEEE
Confidence 457999999987665 7653 3344444322111000 00111 12255789999999995553 5788765
No 60
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=87.83 E-value=5.4 Score=35.28 Aligned_cols=97 Identities=16% Similarity=0.097 Sum_probs=59.8
Q ss_pred ceEEEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCC-cc---ccccCCCC--CCCccceEEeCCCc
Q 012467 328 SGVYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFT-KE---DEKKFNLK--NPPLKNTAVIFPYG 401 (463)
Q Consensus 328 ~~~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~-~~---~~~~~n~~--~p~~rDTv~v~~~g 401 (463)
...+-++.|-.|.++|.|.+.+ .|. +-++..+....+ +. |.+.++.. .+..-..=-+..|.
T Consensus 84 ~mtIyiPaGw~V~V~f~N~e~~------pHn-------l~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gq 150 (195)
T TIGR03094 84 AMTIYLPAGWNVYVTFTNYESL------PHN-------LKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGH 150 (195)
T ss_pred ceEEEEeCCCEEEEEEEcCCCC------Ccc-------EEEecCCCCCCCccccccCceeEeecccccCccccccccccc
Confidence 3458899999999999999866 554 555554321111 00 11111110 00000111123455
Q ss_pred EEEEEEEcCCceeeeecccchHhHHccceeeeeccc
Q 012467 402 WTALRFVADNPGAWAFHCHIEPHFHIGMGVVLALGV 437 (463)
Q Consensus 402 ~~~irf~adnpG~w~~HCHi~~H~~~GM~~~~~~~~ 437 (463)
.....+..-.||.+.+=|-+.-|...||-..+.+..
T Consensus 151 s~sg~~~~~~~G~YwlvCgipGHAesGMw~~lIVSs 186 (195)
T TIGR03094 151 SRSGWWNDTSAGKYWLVCGITGHAESGMWAVVIVSS 186 (195)
T ss_pred eeEEEeccCCCeeEEEEcccCChhhcCcEEEEEEec
Confidence 656667777899999999999999999998887654
No 61
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=87.36 E-value=2.9 Score=35.07 Aligned_cols=72 Identities=21% Similarity=0.237 Sum_probs=46.5
Q ss_pred EEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCccccccCCCCCCCccceEEeCCCcEEEEEEEcC
Q 012467 331 YMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVAD 410 (463)
Q Consensus 331 ~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~ad 410 (463)
++++.|++|+|+ |.+.. .|-.+. .+...+ -.-+++....+.....-|..
T Consensus 56 v~v~pGDTVtw~--~~d~~------~Hnv~~---------~~~~~~-------------~g~~~~~~~~~~s~~~Tfe~- 104 (128)
T COG3794 56 VTVKPGDTVTWV--NTDSV------GHNVTA---------VGGMDP-------------EGSGTLKAGINESFTHTFET- 104 (128)
T ss_pred EEECCCCEEEEE--ECCCC------CceEEE---------eCCCCc-------------ccccccccCCCcceEEEecc-
Confidence 899999999997 44443 565432 222111 11223333334666655554
Q ss_pred CceeeeecccchHhHHccceeeeecc
Q 012467 411 NPGAWAFHCHIEPHFHIGMGVVLALG 436 (463)
Q Consensus 411 npG~w~~HCHi~~H~~~GM~~~~~~~ 436 (463)
||.+.|.|- .|..+||-+.+.++
T Consensus 105 -~G~Y~Y~C~--PH~~~gM~G~IvV~ 127 (128)
T COG3794 105 -PGEYTYYCT--PHPGMGMKGKIVVG 127 (128)
T ss_pred -cceEEEEec--cCCCCCcEEEEEeC
Confidence 999999997 79999999888764
No 62
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=87.28 E-value=2.4 Score=38.74 Aligned_cols=69 Identities=28% Similarity=0.380 Sum_probs=50.4
Q ss_pred EEEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCccccccCCCCCCCccceEEeCCCcEEEEEEEc
Q 012467 330 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 409 (463)
Q Consensus 330 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~a 409 (463)
.+.++.|+.|++.+.+.+.. |. |+|-+.+ .. ..+.||....+.|++
T Consensus 118 ~l~vp~g~~v~~~~ts~DV~-------Hs-------f~ip~~~-----------------~k---~da~PG~~~~~~~~~ 163 (201)
T TIGR02866 118 ELVVPAGTPVRLQVTSKDVI-------HS-------FWVPELG-----------------GK---IDAIPGQYNALWFNA 163 (201)
T ss_pred EEEEEcCCEEEEEEEeCchh-------hc-------ccccccC-----------------ce---EEecCCcEEEEEEEe
Confidence 38899999999999987753 54 5553321 12 234578999999999
Q ss_pred CCceeeeecccc---hHhHHccceeeee
Q 012467 410 DNPGAWAFHCHI---EPHFHIGMGVVLA 434 (463)
Q Consensus 410 dnpG~w~~HCHi---~~H~~~GM~~~~~ 434 (463)
+.||.+...|.. ..| ..|...+.
T Consensus 164 ~~~G~y~~~c~e~cG~~h--~~M~~~v~ 189 (201)
T TIGR02866 164 DEPGVYYGYCAELCGAGH--SLMLFKVV 189 (201)
T ss_pred CCCEEEEEEehhhCCcCc--cCCeEEEE
Confidence 999999999997 445 45665554
No 63
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=87.02 E-value=1.4 Score=37.84 Aligned_cols=74 Identities=15% Similarity=0.255 Sum_probs=51.4
Q ss_pred ceEEEecCCCeEEEEEEecCcceEEEEEEe------CceeEEEEeCCcccceeeEeeEEecCCceEEEEEecCCCCCCce
Q 012467 115 PQILHVQPNKTYRLRIASTTALASLNLAVK------NHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNY 188 (463)
Q Consensus 115 ~~~~~v~~g~~~RlRliNa~~~~~~~~~i~------~h~~~via~DG~~v~P~~~~~l~i~~GeR~dvlV~~~~~~~g~y 188 (463)
+..+.++.|+++|+-+-|.+-.. +.|.++ +|.-..+.+| ..+--..+.+.|.||+.-.++|.+.+ +|.|
T Consensus 62 p~~~~v~aG~tv~~v~~n~~el~-hef~~~~~~~~~~~~~~~~~~~--Dme~d~~~~v~L~PG~s~elvv~ft~--~g~y 136 (158)
T COG4454 62 PSSFEVKAGETVRFVLKNEGELK-HEFTMDAPDKNLEHVTHMILAD--DMEHDDPNTVTLAPGKSGELVVVFTG--AGKY 136 (158)
T ss_pred CCcccccCCcEEeeeecCcccce-EEEeccCccccchhHHHhhhCC--ccccCCcceeEeCCCCcEEEEEEecC--CccE
Confidence 34689999999999999988543 344443 2222233333 22234567899999999999999986 5899
Q ss_pred EEEEE
Q 012467 189 WISAG 193 (463)
Q Consensus 189 ~ir~~ 193 (463)
.++-.
T Consensus 137 e~~C~ 141 (158)
T COG4454 137 EFACN 141 (158)
T ss_pred EEEec
Confidence 88643
No 64
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=82.67 E-value=1.2 Score=36.85 Aligned_cols=33 Identities=15% Similarity=0.113 Sum_probs=27.8
Q ss_pred cccccccceeEEEeccchhhhhcceeeEEEEeCCC
Q 012467 2 LDVWQVQAGTYFYHGHLGMQRSAGLYGSLIVDVAD 36 (463)
Q Consensus 2 ~~~~~~~~GT~WYHsH~~~q~~~Gl~G~lIV~~~~ 36 (463)
|++...++|+|=|+|= .+...||.|.|+|.+++
T Consensus 58 ~~~tF~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~~~ 90 (116)
T TIGR02375 58 YTVTVTEEGVYGVKCT--PHYGMGMVALIQVGDPP 90 (116)
T ss_pred EEEEeCCCEEEEEEcC--CCccCCCEEEEEECCCC
Confidence 4555678999999997 78889999999998864
No 65
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=81.91 E-value=22 Score=27.67 Aligned_cols=68 Identities=22% Similarity=0.284 Sum_probs=42.9
Q ss_pred ecCCCeE--EEEEEecCcceEEEEEEeCceeEEEEeCCcccceeeEeeE-EecCCceEEEEEecCCCCCCceEEEEEecC
Q 012467 120 VQPNKTY--RLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDM-DIYSGESYSVLLTTNQDPSYNYWISAGVRG 196 (463)
Q Consensus 120 v~~g~~~--RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~P~~~~~l-~i~~GeR~dvlV~~~~~~~g~y~ir~~~~~ 196 (463)
+.+|+.+ .+.+-|.|....-.+.+. +-.||..+ ....| .|.+|+...+-+.......|.|.|++....
T Consensus 15 ~~~g~~~~i~~~V~N~G~~~~~~~~v~------~~~~~~~~---~~~~i~~L~~g~~~~v~~~~~~~~~G~~~i~~~iD~ 85 (101)
T PF07705_consen 15 VVPGEPVTITVTVKNNGTADAENVTVR------LYLDGNSV---STVTIPSLAPGESETVTFTWTPPSPGSYTIRVVIDP 85 (101)
T ss_dssp EETTSEEEEEEEEEE-SSS-BEEEEEE------EEETTEEE---EEEEESEB-TTEEEEEEEEEE-SS-CEEEEEEEEST
T ss_pred ccCCCEEEEEEEEEECCCCCCCCEEEE------EEECCcee---ccEEECCcCCCcEEEEEEEEEeCCCCeEEEEEEEee
Confidence 4566665 677899987654444433 45566665 34445 889999999888876545789999887643
No 66
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=76.97 E-value=18 Score=26.50 Aligned_cols=65 Identities=14% Similarity=0.296 Sum_probs=38.0
Q ss_pred eEEEecCCCeEEEEEEecCcceEEEEEEeCceeEEEEeCCcccceeeEeeEEecCCceEEEEEecCCCCCCceEEEEE
Q 012467 116 QILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAG 193 (463)
Q Consensus 116 ~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~P~~~~~l~i~~GeR~dvlV~~~~~~~g~y~ir~~ 193 (463)
+.|++++|+++++.+-+.+. +..+.|...+|..+....... -..|..--+.+++. ++|+|.|++.
T Consensus 5 y~f~v~ag~~l~i~l~~~~~---------d~dl~l~~~~g~~~~~~d~~~--~~~~~~~~i~~~~~--~~GtYyi~V~ 69 (70)
T PF04151_consen 5 YSFTVPAGGTLTIDLSGGSG---------DADLYLYDSNGNSLASYDDSS--QSGGNDESITFTAP--AAGTYYIRVY 69 (70)
T ss_dssp EEEEESTTEEEEEEECETTS---------SEEEEEEETTSSSCEECCCCT--CETTSEEEEEEEES--SSEEEEEEEE
T ss_pred EEEEEcCCCEEEEEEcCCCC---------CeEEEEEcCCCCchhhheecC--CCCCCccEEEEEcC--CCEEEEEEEE
Confidence 47899999999988876665 334667777765443321111 01122222233444 4689999874
No 67
>PRK02888 nitrous-oxide reductase; Validated
Probab=75.80 E-value=9.3 Score=40.77 Aligned_cols=58 Identities=16% Similarity=0.268 Sum_probs=37.8
Q ss_pred eEEEecCCCeEEEEEEecCc--ceEEEEEEeCceeEEEEeCCcccceeeEeeEEecCCceEEEEEecCCCCCCceEEE
Q 012467 116 QILHVQPNKTYRLRIASTTA--LASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWIS 191 (463)
Q Consensus 116 ~~~~v~~g~~~RlRliNa~~--~~~~~~~i~~h~~~via~DG~~v~P~~~~~l~i~~GeR~dvlV~~~~~~~g~y~ir 191 (463)
..|.|+.|+.++|+|.|.-. .-.+-|.|.++.+ .+.+.||+.-.+-+++++ +|.||+.
T Consensus 555 ~~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~nI----------------~~dv~PG~t~svtF~adk--PGvy~~~ 614 (635)
T PRK02888 555 REFTVKQGDEVTVIVTNLDKVEDLTHGFAIPNYGV----------------NMEVAPQATASVTFTADK--PGVYWYY 614 (635)
T ss_pred ceEEecCCCEEEEEEEeCCcccccccceeecccCc----------------cEEEcCCceEEEEEEcCC--CEEEEEE
Confidence 35666666666666666432 2334444444432 246779999999999986 6899875
No 68
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=75.60 E-value=5.7 Score=37.00 Aligned_cols=57 Identities=16% Similarity=0.257 Sum_probs=45.3
Q ss_pred EEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCccccccCCCCCCCccceEEeCCCcEEEEEEEcC
Q 012467 331 YMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVAD 410 (463)
Q Consensus 331 ~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~ad 410 (463)
+.++.|+.|++.+...+.. | .|+|-+.+ ..+|.+ ||-...+.|+++
T Consensus 141 l~lP~g~pV~~~ltS~DVi-------H-------SF~VP~l~-----------------~K~Dai---PG~~n~~~~~~~ 186 (226)
T TIGR01433 141 IAFPVNTPINFKITSNSVM-------N-------SFFIPQLG-----------------SQIYAM---AGMQTKLHLIAN 186 (226)
T ss_pred EEEECCCEEEEEEEECchh-------h-------hhhhhhcC-----------------CeeecC---CCceEEEEEEeC
Confidence 7899999999999988754 4 46665543 345554 688889999999
Q ss_pred Cceeeeecccc
Q 012467 411 NPGAWAFHCHI 421 (463)
Q Consensus 411 npG~w~~HCHi 421 (463)
.||.+...|--
T Consensus 187 ~~G~y~g~CaE 197 (226)
T TIGR01433 187 EPGVYDGISAN 197 (226)
T ss_pred CCEEEEEEchh
Confidence 99999999973
No 69
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=74.83 E-value=45 Score=27.29 Aligned_cols=22 Identities=14% Similarity=0.350 Sum_probs=12.4
Q ss_pred eeEeeEEecCCceEEEEEecCC
Q 012467 161 FEVDDMDIYSGESYSVLLTTNQ 182 (463)
Q Consensus 161 ~~~~~l~i~~GeR~dvlV~~~~ 182 (463)
.....+.|.+|..|.+++.-..
T Consensus 62 l~~~~i~l~~g~~yTl~~~g~~ 83 (122)
T PF14344_consen 62 LLSTTITLEAGKSYTLFAVGTA 83 (122)
T ss_pred EEeccEEEcCCCEEEEEEECCC
Confidence 4445556666666666665544
No 70
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=72.12 E-value=12 Score=35.25 Aligned_cols=69 Identities=25% Similarity=0.297 Sum_probs=49.4
Q ss_pred EEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCccccccCCCCCCCccceEEeCCCcEEEEEEEcC
Q 012467 331 YMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVAD 410 (463)
Q Consensus 331 ~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~ad 410 (463)
+.++.|+.|++.+...+.+ |. |+|-+-| --+.+.||-.....++++
T Consensus 139 l~lPv~~~V~f~ltS~DVi-------Hs-------F~IP~l~--------------------~k~d~iPG~~~~~~~~~~ 184 (247)
T COG1622 139 LVLPVGRPVRFKLTSADVI-------HS-------FWIPQLG--------------------GKIDAIPGMTTELWLTAN 184 (247)
T ss_pred EEEeCCCeEEEEEEechhc-------ee-------EEecCCC--------------------ceeeecCCceEEEEEecC
Confidence 8899999999999988764 44 6664432 222344788889999999
Q ss_pred CceeeeecccchHhHHc-cceeee
Q 012467 411 NPGAWAFHCHIEPHFHI-GMGVVL 433 (463)
Q Consensus 411 npG~w~~HCHi~~H~~~-GM~~~~ 433 (463)
.||.+..+|+..-=..- .|-..+
T Consensus 185 ~~G~Y~g~Cae~CG~gH~~M~~~v 208 (247)
T COG1622 185 KPGTYRGICAEYCGPGHSFMRFKV 208 (247)
T ss_pred CCeEEEEEcHhhcCCCcccceEEE
Confidence 99999999996543322 344444
No 71
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=70.39 E-value=35 Score=28.24 Aligned_cols=58 Identities=17% Similarity=0.264 Sum_probs=42.0
Q ss_pred eEEEecCCCeEEEEEEecCcceEEEEEEeCceeEEEEeCCcccceeeEeeEEecCCceEEEEEecCCCCCCceEEEEE
Q 012467 116 QILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAG 193 (463)
Q Consensus 116 ~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~P~~~~~l~i~~GeR~dvlV~~~~~~~g~y~ir~~ 193 (463)
..+.++.|+.++|++-+.- -.+.|.|.+..+. +.+-||+.-.+-+++++ +|.|+++-.
T Consensus 46 ~~l~lp~g~~v~~~ltS~D--ViHsf~ip~~~~k----------------~d~~PG~~~~~~~~~~~--~G~y~~~C~ 103 (120)
T PF00116_consen 46 NELVLPAGQPVRFHLTSED--VIHSFWIPELGIK----------------MDAIPGRTNSVTFTPDK--PGTYYGQCA 103 (120)
T ss_dssp SEEEEETTSEEEEEEEESS--S-EEEEETTCTEE----------------EEEBTTCEEEEEEEESS--SEEEEEEE-
T ss_pred ceecccccceEeEEEEcCC--ccccccccccCcc----------------cccccccceeeeeeecc--CCcEEEcCc
Confidence 4799999999999998844 4456666665433 45567888888888875 689988753
No 72
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=69.01 E-value=9.2 Score=35.37 Aligned_cols=57 Identities=19% Similarity=0.170 Sum_probs=45.1
Q ss_pred EEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCccccccCCCCCCCccceEEeCCCcEEEEEEEcC
Q 012467 331 YMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVAD 410 (463)
Q Consensus 331 ~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~ad 410 (463)
+.++.|..|++.+...+.. | .|+|=+.+ ..+|.+ ||-...+.|+++
T Consensus 132 l~iP~g~~v~~~ltS~DVi-------H-------sf~vP~l~-----------------~k~dai---PG~~~~~~~~~~ 177 (217)
T TIGR01432 132 LNIPKDRPVLFKLQSADTM-------T-------SFWIPQLG-----------------GQKYAM---TGMTMNWYLQAD 177 (217)
T ss_pred EEEECCCEEEEEEECCchh-------h-------hhhchhhC-----------------ceeecC---CCceEEEEEEeC
Confidence 7899999999999987754 3 47775442 345554 788889999999
Q ss_pred Cceeeeecccc
Q 012467 411 NPGAWAFHCHI 421 (463)
Q Consensus 411 npG~w~~HCHi 421 (463)
.||.+--.|=-
T Consensus 178 ~~G~y~g~Cae 188 (217)
T TIGR01432 178 QVGTYRGRNAN 188 (217)
T ss_pred CCEEEEEEehh
Confidence 99999999973
No 73
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=68.64 E-value=33 Score=26.89 Aligned_cols=71 Identities=18% Similarity=0.204 Sum_probs=42.0
Q ss_pred ecCCCeEEEEEE--ecCcceEEEEEEeCc--eeEEEEeCCcccceeeEeeEEecCCceEEEEEecCCC-CCCceEEEEEe
Q 012467 120 VQPNKTYRLRIA--STTALASLNLAVKNH--KMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQD-PSYNYWISAGV 194 (463)
Q Consensus 120 v~~g~~~RlRli--Na~~~~~~~~~i~~h--~~~via~DG~~v~P~~~~~l~i~~GeR~dvlV~~~~~-~~g~y~ir~~~ 194 (463)
-+||+++.||++ +... . .-...+. .++|..-+|..+.-... ........++.-+.+++. ..|.|.|++..
T Consensus 11 YrPGetV~~~~~~~~~~~-~--~~~~~~~~~~v~i~dp~g~~v~~~~~--~~~~~~G~~~~~~~lp~~~~~G~y~i~~~~ 85 (99)
T PF01835_consen 11 YRPGETVHFRAIVRDLDN-D--FKPPANSPVTVTIKDPSGNEVFRWSV--NTTNENGIFSGSFQLPDDAPLGTYTIRVKT 85 (99)
T ss_dssp E-TTSEEEEEEEEEEECT-T--CSCESSEEEEEEEEETTSEEEEEEEE--EETTCTTEEEEEEE--SS---EEEEEEEEE
T ss_pred cCCCCEEEEEEEEecccc-c--cccccCCceEEEEECCCCCEEEEEEe--eeeCCCCEEEEEEECCCCCCCEeEEEEEEE
Confidence 379999999988 6552 1 0011222 35666667766633222 234667888888888774 35899999986
Q ss_pred c
Q 012467 195 R 195 (463)
Q Consensus 195 ~ 195 (463)
.
T Consensus 86 ~ 86 (99)
T PF01835_consen 86 D 86 (99)
T ss_dssp T
T ss_pred c
Confidence 4
No 74
>COG1470 Predicted membrane protein [Function unknown]
Probab=68.28 E-value=69 Score=32.89 Aligned_cols=77 Identities=21% Similarity=0.337 Sum_probs=54.0
Q ss_pred CceEEEecCCCe--EEEEEEecCcc--eEEEEEEeCceeEEEEeCCcccceeeEeeEEecCCce--EEEEEecCCC-CCC
Q 012467 114 APQILHVQPNKT--YRLRIASTTAL--ASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGES--YSVLLTTNQD-PSY 186 (463)
Q Consensus 114 ~~~~~~v~~g~~--~RlRliNa~~~--~~~~~~i~~h~~~via~DG~~v~P~~~~~l~i~~GeR--~dvlV~~~~~-~~g 186 (463)
.+..+++++|+- .|++|-|.|.. .-+.+.|++-.=|=|.+|+.-+ + .|.||+| .++-|+++.+ .+|
T Consensus 387 g~~~lt~taGee~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I-----~--sL~pge~~tV~ltI~vP~~a~aG 459 (513)
T COG1470 387 GPYRLTITAGEEKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTI-----P--SLEPGESKTVSLTITVPEDAGAG 459 (513)
T ss_pred CcEEEEecCCccceEEEEEEecCCCccceeeEEecCCccceEEECcccc-----c--ccCCCCcceEEEEEEcCCCCCCC
Confidence 446788888854 59999999965 4578888887778888888743 2 2344544 5566666664 458
Q ss_pred ceEEEEEecCC
Q 012467 187 NYWISAGVRGR 197 (463)
Q Consensus 187 ~y~ir~~~~~~ 197 (463)
+|.++.....+
T Consensus 460 dY~i~i~~ksD 470 (513)
T COG1470 460 DYRITITAKSD 470 (513)
T ss_pred cEEEEEEEeec
Confidence 99988776555
No 75
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=67.56 E-value=29 Score=28.89 Aligned_cols=75 Identities=25% Similarity=0.304 Sum_probs=47.3
Q ss_pred EEEecCC-CeEEEEEEecCcce----EEEEEEe-CceeEEEE-------eCCccccee----eEeeEEecCCceEEEEEe
Q 012467 117 ILHVQPN-KTYRLRIASTTALA----SLNLAVK-NHKMVVVE-------ADGNYVQPF----EVDDMDIYSGESYSVLLT 179 (463)
Q Consensus 117 ~~~v~~g-~~~RlRliNa~~~~----~~~~~i~-~h~~~via-------~DG~~v~P~----~~~~l~i~~GeR~dvlV~ 179 (463)
.|+|+++ +.+.+.|-|.|... .+++-|- .-.+.-|+ .|-+||.+- ...+=+|++||..+|-++
T Consensus 17 ~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svtF~ 96 (125)
T TIGR02695 17 SISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVTFD 96 (125)
T ss_pred EEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEEEE
Confidence 7999984 88999999998532 2333331 12233332 345566432 234568999999999999
Q ss_pred cCCC-CCCceEEE
Q 012467 180 TNQD-PSYNYWIS 191 (463)
Q Consensus 180 ~~~~-~~g~y~ir 191 (463)
++.- ++++|...
T Consensus 97 ~~~l~~g~~Y~f~ 109 (125)
T TIGR02695 97 VSKLSAGEDYTFF 109 (125)
T ss_pred CCCCCCCCcceEE
Confidence 8742 34468653
No 76
>PRK02710 plastocyanin; Provisional
Probab=66.42 E-value=20 Score=29.59 Aligned_cols=58 Identities=17% Similarity=0.284 Sum_probs=35.4
Q ss_pred ceEEEecCCCeEEEEEEecCcceEEEEEEeCceeEEEEeCCcccceeeEeeEEecCCceEEEEEecCCCCCCceEEE
Q 012467 115 PQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWIS 191 (463)
Q Consensus 115 ~~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~P~~~~~l~i~~GeR~dvlV~~~~~~~g~y~ir 191 (463)
|..++|++|++++| +|.+. ..+.+.+++ . .......+.+.+|+.+++.++. +|.|...
T Consensus 46 P~~i~v~~Gd~V~~--~N~~~-~~H~v~~~~----------~--~~~~~~~~~~~pg~t~~~tF~~----~G~y~y~ 103 (119)
T PRK02710 46 PSTLTIKAGDTVKW--VNNKL-APHNAVFDG----------A--KELSHKDLAFAPGESWEETFSE----AGTYTYY 103 (119)
T ss_pred CCEEEEcCCCEEEE--EECCC-CCceEEecC----------C--ccccccccccCCCCEEEEEecC----CEEEEEE
Confidence 45799999998766 56543 234444432 1 1112234678999999976664 4777554
No 77
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=65.09 E-value=59 Score=27.23 Aligned_cols=61 Identities=13% Similarity=0.189 Sum_probs=42.7
Q ss_pred EEEecCCCeEEEEEEecCcceEEEEEEeCceeEEEEeCCccc-------ceeeEeeEEecCCceEEEEEecCC
Q 012467 117 ILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYV-------QPFEVDDMDIYSGESYSVLLTTNQ 182 (463)
Q Consensus 117 ~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v-------~P~~~~~l~i~~GeR~dvlV~~~~ 182 (463)
.|.+.....|+|++-. ....+|.|||..+ |..++..- .+.....+.+..|++|+|-|...+
T Consensus 53 ~~~~~~~G~y~f~~~~---~d~~~l~idg~~v--id~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~ 120 (145)
T PF07691_consen 53 YFKPPETGTYTFSLTS---DDGARLWIDGKLV--IDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFN 120 (145)
T ss_dssp EEEESSSEEEEEEEEE---SSEEEEEETTEEE--EECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEE
T ss_pred EEecccCceEEEEEEe---cccEEEEECCEEE--EcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEE
Confidence 4677676789999883 3356778888754 66776543 455667788999999999988765
No 78
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=65.03 E-value=27 Score=30.51 Aligned_cols=59 Identities=15% Similarity=0.185 Sum_probs=43.6
Q ss_pred EEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCccccccCCCCCCCccceEEeCCCcEEEEEEEcC
Q 012467 331 YMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVAD 410 (463)
Q Consensus 331 ~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~ad 410 (463)
+.++.|..|++.+...+.. |. |+|-+.| ...|.+ ||-...+.|.++
T Consensus 75 LvLP~g~~Vr~~lTS~DVI-------HS-------F~VP~lg-----------------vK~Dav---PGr~n~l~~~~~ 120 (162)
T PTZ00047 75 LTLPTRTHIRFLITATDVI-------HS-------WSVPSLG-----------------IKADAI---PGRLHKINTFIL 120 (162)
T ss_pred EEEeCCCEEEEEEEeCccc-------ee-------eeccccC-----------------ceeecc---CCceEEEEEecC
Confidence 7789999999999887753 55 5554432 223333 677788899999
Q ss_pred CceeeeecccchH
Q 012467 411 NPGAWAFHCHIEP 423 (463)
Q Consensus 411 npG~w~~HCHi~~ 423 (463)
.||.+...|.-.-
T Consensus 121 ~~G~y~gqCsElC 133 (162)
T PTZ00047 121 REGVFYGQCSEMC 133 (162)
T ss_pred CCeEEEEEcchhc
Confidence 9999999998543
No 79
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=64.52 E-value=57 Score=24.37 Aligned_cols=66 Identities=23% Similarity=0.349 Sum_probs=30.5
Q ss_pred ecCCCeE--EEEEEecCcce--EEEEEEeCceeEEEEeCCcc--cceeeEeeEEecCCceEE--EEEecCCC-CCCceEE
Q 012467 120 VQPNKTY--RLRIASTTALA--SLNLAVKNHKMVVVEADGNY--VQPFEVDDMDIYSGESYS--VLLTTNQD-PSYNYWI 190 (463)
Q Consensus 120 v~~g~~~--RlRliNa~~~~--~~~~~i~~h~~~via~DG~~--v~P~~~~~l~i~~GeR~d--vlV~~~~~-~~g~y~i 190 (463)
|++|+.. ++.+-|.+... .+.++++. =+|=. ..|..+. .|.|||... +.|+.+.+ .+|+|.|
T Consensus 1 v~~G~~~~~~~tv~N~g~~~~~~v~~~l~~-------P~GW~~~~~~~~~~--~l~pG~s~~~~~~V~vp~~a~~G~y~v 71 (78)
T PF10633_consen 1 VTPGETVTVTLTVTNTGTAPLTNVSLSLSL-------PEGWTVSASPASVP--SLPPGESVTVTFTVTVPADAAPGTYTV 71 (78)
T ss_dssp --TTEEEEEEEEEE--SSS-BSS-EEEEE---------TTSE---EEEEE----B-TTSEEEEEEEEEE-TT--SEEEEE
T ss_pred CCCCCEEEEEEEEEECCCCceeeEEEEEeC-------CCCccccCCccccc--cCCCCCEEEEEEEEECCCCCCCceEEE
Confidence 3466654 77888887543 34444442 23322 2333333 788996654 44555443 4589998
Q ss_pred EEEe
Q 012467 191 SAGV 194 (463)
Q Consensus 191 r~~~ 194 (463)
.+..
T Consensus 72 ~~~a 75 (78)
T PF10633_consen 72 TVTA 75 (78)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8753
No 80
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=62.38 E-value=7 Score=29.97 Aligned_cols=28 Identities=29% Similarity=0.377 Sum_probs=22.1
Q ss_pred cccccccceeEEEeccchhhhhcceeeEEEEe
Q 012467 2 LDVWQVQAGTYFYHGHLGMQRSAGLYGSLIVD 33 (463)
Q Consensus 2 ~~~~~~~~GT~WYHsH~~~q~~~Gl~G~lIV~ 33 (463)
|++...++|+|=|||=..- +|.|.++|+
T Consensus 56 ~~~tf~~~G~y~y~C~~Hp----~M~G~v~V~ 83 (83)
T TIGR02657 56 YSLTFTEAGTYDYHCTPHP----FMRGKVVVE 83 (83)
T ss_pred EEEECCCCEEEEEEcCCCC----CCeEEEEEC
Confidence 5667788999999997433 489999985
No 81
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=62.20 E-value=37 Score=26.86 Aligned_cols=64 Identities=25% Similarity=0.333 Sum_probs=38.8
Q ss_pred CceEEEecCCCeEEEEEEecCcceEEEEEEeCceeEEEEeCCccc--c----eeeEeeEEecCCceEEEEEecCCCCCCc
Q 012467 114 APQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYV--Q----PFEVDDMDIYSGESYSVLLTTNQDPSYN 187 (463)
Q Consensus 114 ~~~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v--~----P~~~~~l~i~~GeR~dvlV~~~~~~~g~ 187 (463)
.|..|+|++|++++| +|... . +|++.+.. |+... + +..-....+.+|+.+++-++ + +|.
T Consensus 15 ~P~~i~V~~G~tV~~--~n~~~-~-------~Hnv~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~--~--~G~ 79 (99)
T PF00127_consen 15 DPSEITVKAGDTVTF--VNNDS-M-------PHNVVFVA-DGMPAGADSDYVPPGDSSPLLAPGETYSVTFT--K--PGT 79 (99)
T ss_dssp ESSEEEEETTEEEEE--EEESS-S-------SBEEEEET-TSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEE--S--SEE
T ss_pred eCCEEEECCCCEEEE--EECCC-C-------CceEEEec-ccccccccccccCccccceecCCCCEEEEEeC--C--CeE
Confidence 345899999997764 55421 1 24444443 43221 1 11115678999999999877 3 578
Q ss_pred eEEEE
Q 012467 188 YWISA 192 (463)
Q Consensus 188 y~ir~ 192 (463)
|...=
T Consensus 80 y~y~C 84 (99)
T PF00127_consen 80 YEYYC 84 (99)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 87643
No 82
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=61.94 E-value=27 Score=32.53 Aligned_cols=70 Identities=21% Similarity=0.260 Sum_probs=48.9
Q ss_pred EEEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCccccccCCCCCCCccceEEeCCCcEEEEEEEc
Q 012467 330 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 409 (463)
Q Consensus 330 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~a 409 (463)
.+.++.|+.|++.+.+.+. .|. |+|-+.| .. +.+-||....+.|.+
T Consensus 141 ~l~lP~~~~v~~~~ts~DV-------iHs-------f~ip~~~-----------------~k---~d~~Pg~~~~~~~~~ 186 (228)
T MTH00140 141 RLVLPYSVDTRVLVTSADV-------IHS-------WTVPSLG-----------------VK---VDAIPGRLNQLSFEP 186 (228)
T ss_pred eEEEeeCcEEEEEEEcCcc-------ccc-------eeccccC-----------------ce---eECCCCcceeEEEEe
Confidence 4889999999999999775 355 4443332 11 233478888999999
Q ss_pred CCceeeeecccchHhHH-ccceeee
Q 012467 410 DNPGAWAFHCHIEPHFH-IGMGVVL 433 (463)
Q Consensus 410 dnpG~w~~HCHi~~H~~-~GM~~~~ 433 (463)
+.||.+...|.-.-... ..|-..+
T Consensus 187 ~~~g~y~~~C~e~CG~~H~~M~~~v 211 (228)
T MTH00140 187 KRPGVFYGQCSEICGANHSFMPIVV 211 (228)
T ss_pred CCCEEEEEECccccCcCcCCCeEEE
Confidence 99999999998665443 2344444
No 83
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=60.35 E-value=24 Score=25.54 Aligned_cols=47 Identities=26% Similarity=0.476 Sum_probs=29.1
Q ss_pred EEecCCCeEEEEEEecCcceEEEEEEeCceeEEEEeCCcccceeeEeeEEecCCceEEE
Q 012467 118 LHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSV 176 (463)
Q Consensus 118 ~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~P~~~~~l~i~~GeR~dv 176 (463)
+.+.+|+..+||.-.+. .|.+.+-.++|.. +| ..+-+.|.+||++.+
T Consensus 2 ~~L~~g~~~~lr~~~~~-----~l~v~~G~vWlT~-~g------~~~D~~L~~G~~l~l 48 (63)
T PF11142_consen 2 FELAPGETLSLRAAAGQ-----RLRVESGRVWLTR-EG------DPDDYWLQAGDSLRL 48 (63)
T ss_pred EEeCCCceEEeEcCCCc-----EEEEccccEEEEC-CC------CCCCEEECCCCEEEe
Confidence 56678888888854433 3666666777654 44 234466777777654
No 84
>PF14874 PapD-like: Flagellar-associated PapD-like
Probab=59.02 E-value=86 Score=24.59 Aligned_cols=66 Identities=20% Similarity=0.214 Sum_probs=38.8
Q ss_pred EecCCCeE--EEEEEecCcce-EEEEEEeCceeEEEEeCCcccceeeEeeEEecCCceEEEEEecC-CCCCCceEEEE
Q 012467 119 HVQPNKTY--RLRIASTTALA-SLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTN-QDPSYNYWISA 192 (463)
Q Consensus 119 ~v~~g~~~--RlRliNa~~~~-~~~~~i~~h~~~via~DG~~v~P~~~~~l~i~~GeR~dvlV~~~-~~~~g~y~ir~ 192 (463)
.+..|++| .+.|.|.|... .+++......-.. -.++| ..-.|+||+..++.|++. ..+.|.|.-..
T Consensus 15 ~v~~g~~~~~~v~l~N~s~~p~~f~v~~~~~~~~~-----~~v~~---~~g~l~PG~~~~~~V~~~~~~~~g~~~~~l 84 (102)
T PF14874_consen 15 NVFVGQTYSRTVTLTNTSSIPARFRVRQPESLSSF-----FSVEP---PSGFLAPGESVELEVTFSPTKPLGDYEGSL 84 (102)
T ss_pred EEccCCEEEEEEEEEECCCCCEEEEEEeCCcCCCC-----EEEEC---CCCEECCCCEEEEEEEEEeCCCCceEEEEE
Confidence 45667776 69999999653 3444443310000 01122 234699999999999987 44457665433
No 85
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=58.35 E-value=36 Score=30.86 Aligned_cols=59 Identities=19% Similarity=0.223 Sum_probs=44.1
Q ss_pred EEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCccccccCCCCCCCccceEEeCCCcEEEEEEEcC
Q 012467 331 YMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVAD 410 (463)
Q Consensus 331 ~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~ad 410 (463)
+.++.|+.+++.+...+.. |. |+|-+.+ ..+|. -||-...+.|.++
T Consensus 118 l~lp~g~~v~~~ltS~DVi-------Hs-------f~vp~l~-----------------~k~d~---~PG~~~~~~~~~~ 163 (194)
T MTH00047 118 LRLVYGVPYHLLVTSSDVI-------HS-------FSVPDLN-----------------LKMDA---IPGRINHLFFCPD 163 (194)
T ss_pred EEEeCCCEEEeeeecCccc-------cc-------eeccccC-----------------ceeec---CCCceEEEEEEcC
Confidence 7899999999999987754 55 4443322 22333 3788999999999
Q ss_pred CceeeeecccchH
Q 012467 411 NPGAWAFHCHIEP 423 (463)
Q Consensus 411 npG~w~~HCHi~~ 423 (463)
.||.+..-|.-.-
T Consensus 164 ~~G~y~g~C~e~C 176 (194)
T MTH00047 164 RHGVFVGYCSELC 176 (194)
T ss_pred CCEEEEEEeehhh
Confidence 9999999998543
No 86
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=56.96 E-value=80 Score=26.24 Aligned_cols=61 Identities=16% Similarity=0.313 Sum_probs=37.6
Q ss_pred EEEecCCCeEEEEEEecCcceEEEEEEeCceeEEEEeCCccc-ceeeEeeEEecCCceEEEEEecCC
Q 012467 117 ILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYV-QPFEVDDMDIYSGESYSVLLTTNQ 182 (463)
Q Consensus 117 ~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v-~P~~~~~l~i~~GeR~dvlV~~~~ 182 (463)
.|++.....|+|.+... ...+|.|+|. .||..++..- .+.....+.+..|++|.|.|+..+
T Consensus 51 ~i~~~~~G~y~f~~~~~---~~~~l~Idg~--~vid~~~~~~~~~~~~~~v~l~~g~~~~i~v~y~~ 112 (136)
T smart00758 51 YLKPPEDGEYTFSITSD---DGARLWIDGK--LVIDNWGKHEARPSTSSTLYLLAGGTYPIRIEYFE 112 (136)
T ss_pred EEECCCCccEEEEEEcC---CcEEEEECCc--EEEcCCccCCCccccceeEEEeCCcEEEEEEEEEe
Confidence 46666666799988543 3457788875 3454444321 223344577788888888777654
No 87
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=56.37 E-value=34 Score=31.80 Aligned_cols=60 Identities=17% Similarity=0.313 Sum_probs=46.2
Q ss_pred EEEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCccccccCCCCCCCccceEEeCCCcEEEEEEEc
Q 012467 330 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 409 (463)
Q Consensus 330 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~a 409 (463)
.+.++.|+.|++.+...+.. |. |+|-+.| ..+|.+ ||-...+.|.+
T Consensus 141 ~l~lP~~~~v~~~~tS~DVi-------Hs-------f~vP~l~-----------------~K~Dai---PG~~n~~~~~~ 186 (226)
T MTH00139 141 RLVLPYKSNIRALITAADVL-------HS-------WTVPSLG-----------------VKIDAV---PGRLNQVGFFI 186 (226)
T ss_pred eEEEecCCEEEEEEecCccc-------cc-------eeccccC-----------------ccccCC---CCcEEEEEEEc
Confidence 48899999999999987754 44 6665543 345655 68888899999
Q ss_pred CCceeeeecccchH
Q 012467 410 DNPGAWAFHCHIEP 423 (463)
Q Consensus 410 dnpG~w~~HCHi~~ 423 (463)
+.||.+.--|--.-
T Consensus 187 ~~~G~y~g~CsE~C 200 (226)
T MTH00139 187 NRPGVFYGQCSEIC 200 (226)
T ss_pred CCCEEEEEEChhhc
Confidence 99999999997443
No 88
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=53.22 E-value=36 Score=31.74 Aligned_cols=60 Identities=17% Similarity=0.323 Sum_probs=45.8
Q ss_pred EEEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCccccccCCCCCCCccceEEeCCCcEEEEEEEc
Q 012467 330 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 409 (463)
Q Consensus 330 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~a 409 (463)
.+.++.|+.|++.+...+.. | .|+|-+.| ...|.+ ||....+.|.+
T Consensus 141 ~lvlP~~~~v~~~~tS~DVi-------H-------sf~ip~~~-----------------~k~da~---PG~~~~~~~~~ 186 (230)
T MTH00129 141 RMVVPVESPIRVLVSAEDVL-------H-------SWAVPALG-----------------VKMDAV---PGRLNQTAFIA 186 (230)
T ss_pred eEEEecCcEEEEEEEeCccc-------c-------ceeccccC-----------------CccccC---CCceEEEEEEe
Confidence 37899999999999987753 3 47776553 233433 78888899999
Q ss_pred CCceeeeecccchH
Q 012467 410 DNPGAWAFHCHIEP 423 (463)
Q Consensus 410 dnpG~w~~HCHi~~ 423 (463)
+.||.+...|.-.-
T Consensus 187 ~~~G~~~g~C~e~C 200 (230)
T MTH00129 187 SRPGVFYGQCSEIC 200 (230)
T ss_pred CCceEEEEEChhhc
Confidence 99999999998643
No 89
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=52.23 E-value=25 Score=34.46 Aligned_cols=58 Identities=16% Similarity=0.181 Sum_probs=44.9
Q ss_pred EEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCccccccCCCCCCCccceEEeCCCcEEEEEEEcC
Q 012467 331 YMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVAD 410 (463)
Q Consensus 331 ~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~ad 410 (463)
+.++.|..|++.+...+.+ | .|+|-..+ ...|.+ ||-...+.|.++
T Consensus 153 L~iP~g~pV~f~lTS~DVi-------H-------SF~IP~Lg-----------------~K~dam---PG~~n~l~~~a~ 198 (315)
T PRK10525 153 IAFPANVPVYFKVTSNSVM-------N-------SFFIPRLG-----------------SQIYAM---AGMQTRLHLIAN 198 (315)
T ss_pred EEEecCCEEEEEEEEchhh-------h-------hhhhhhhC-----------------CeeecC---CCceeEEEEEcC
Confidence 7899999999999988764 4 46665543 223433 788889999999
Q ss_pred Cceeeeecccch
Q 012467 411 NPGAWAFHCHIE 422 (463)
Q Consensus 411 npG~w~~HCHi~ 422 (463)
.||.+.-.|--.
T Consensus 199 ~~G~Y~G~CaEy 210 (315)
T PRK10525 199 EPGTYDGISASY 210 (315)
T ss_pred CCEEEEEEChhh
Confidence 999999999743
No 90
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=51.61 E-value=42 Score=31.24 Aligned_cols=62 Identities=13% Similarity=0.247 Sum_probs=46.1
Q ss_pred EEEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCccccccCCCCCCCccceEEeCCCcEEEEEEEc
Q 012467 330 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 409 (463)
Q Consensus 330 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~a 409 (463)
.+.++.|+.|++.+...+.. | .|+|-+.| ...|.+ ||....+.|.+
T Consensus 141 ~lvlP~~~~v~~~~tS~DVi-------H-------sf~ip~lg-----------------~k~dai---PG~~~~~~~~~ 186 (227)
T MTH00098 141 RVVLPMEMPIRMLISSEDVL-------H-------SWAVPSLG-----------------LKTDAI---PGRLNQTTLMS 186 (227)
T ss_pred eEEecCCCEEEEEEEECccc-------c-------cccccccc-----------------cceecC---CCceEEEEEec
Confidence 47899999999999987753 3 36664443 233433 78888899999
Q ss_pred CCceeeeecccchHhH
Q 012467 410 DNPGAWAFHCHIEPHF 425 (463)
Q Consensus 410 dnpG~w~~HCHi~~H~ 425 (463)
+.||.+..-|.-.-..
T Consensus 187 ~~~G~~~g~Cse~CG~ 202 (227)
T MTH00098 187 TRPGLYYGQCSEICGS 202 (227)
T ss_pred CCcEEEEEECccccCc
Confidence 9999999999865433
No 91
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=51.27 E-value=40 Score=31.46 Aligned_cols=67 Identities=16% Similarity=0.210 Sum_probs=47.9
Q ss_pred EEEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCccccccCCCCCCCccceEEeCCCcEEEEEEEc
Q 012467 330 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 409 (463)
Q Consensus 330 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~a 409 (463)
.+.++.|..+++.+...+.. |. |+|-+.| ...|.+ ||-...+.|.+
T Consensus 141 ~lvlP~~~~v~~~~tS~DVi-------Hs-------f~iP~lg-----------------~k~dai---PG~~~~~~~~~ 186 (229)
T MTH00038 141 RLVLPYQTPIRVLVSSADVL-------HS-------WAVPSLG-----------------VKMDAV---PGRLNQTTFFI 186 (229)
T ss_pred eEEEecCeEEEEEEEECCcc-------cc-------ccccccC-----------------ceeecC---CCceEEEEEEc
Confidence 47899999999999987753 54 5554432 234443 68888899999
Q ss_pred CCceeeeecccchHhHHccce
Q 012467 410 DNPGAWAFHCHIEPHFHIGMG 430 (463)
Q Consensus 410 dnpG~w~~HCHi~~H~~~GM~ 430 (463)
+.||.+..-|--.--..-..|
T Consensus 187 ~~~G~~~g~Cse~CG~~Hs~M 207 (229)
T MTH00038 187 SRTGLFYGQCSEICGANHSFM 207 (229)
T ss_pred CCCEEEEEEcccccCcCcCCC
Confidence 999999999986554433333
No 92
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=50.74 E-value=65 Score=28.68 Aligned_cols=91 Identities=15% Similarity=0.187 Sum_probs=54.3
Q ss_pred eEEEecCCCeEEEEEEecCcceEEEEEE-eCc----eeEEEEeCCcccc-----eeeEeeEEecCCceEEEEEecCCCCC
Q 012467 116 QILHVQPNKTYRLRIASTTALASLNLAV-KNH----KMVVVEADGNYVQ-----PFEVDDMDIYSGESYSVLLTTNQDPS 185 (463)
Q Consensus 116 ~~~~v~~g~~~RlRliNa~~~~~~~~~i-~~h----~~~via~DG~~v~-----P~~~~~l~i~~GeR~dvlV~~~~~~~ 185 (463)
.+|.+..|-++.+-|+|.. ...+.+.| ..- .--.++.||..+- |..-..=-+..||+-..+.+.- ++
T Consensus 85 mtIyiPaGw~V~V~f~N~e-~~pHnl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gqs~sg~~~~~--~~ 161 (195)
T TIGR03094 85 MTIYLPAGWNVYVTFTNYE-SLPHNLKLLPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGHSRSGWWNDT--SA 161 (195)
T ss_pred eEEEEeCCCEEEEEEEcCC-CCCccEEEecCCCCCCCccccccCceeEeecccccCccccccccccceeEEEeccC--CC
Confidence 5899999999999999998 44455554 111 1234677776541 1111223456889977766655 47
Q ss_pred CceEEEEEecCCCCCCCCeEEEEEeC
Q 012467 186 YNYWISAGVRGRKPATPPALTLLNYH 211 (463)
Q Consensus 186 g~y~ir~~~~~~~~~~~~~~a~l~y~ 211 (463)
|.||+.-.-.+- ....-.+.|.+.
T Consensus 162 G~YwlvCgipGH--AesGMw~~lIVS 185 (195)
T TIGR03094 162 GKYWLVCGITGH--AESGMWAVVIVS 185 (195)
T ss_pred eeEEEEcccCCh--hhcCcEEEEEEe
Confidence 999995322111 122345566654
No 93
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=48.32 E-value=74 Score=25.96 Aligned_cols=47 Identities=15% Similarity=0.266 Sum_probs=26.9
Q ss_pred eEEEEEEecCcc-eEEEEEEeCce-eEEEEeCCcccceeeEeeEEecCCceEEEEEec
Q 012467 125 TYRLRIASTTAL-ASLNLAVKNHK-MVVVEADGNYVQPFEVDDMDIYSGESYSVLLTT 180 (463)
Q Consensus 125 ~~RlRliNa~~~-~~~~~~i~~h~-~~via~DG~~v~P~~~~~l~i~~GeR~dvlV~~ 180 (463)
.|+++|+|-+.. ..+.|+++|.+ +++. . ....+.|.+|+..++-|..
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~-------~--~~~~i~v~~g~~~~~~v~v 82 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLPGAELQ-------G--PENTITVPPGETREVPVFV 82 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-SS-EE--------E--S--EEEE-TT-EEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEecCCCeEEE-------C--CCcceEECCCCEEEEEEEE
Confidence 489999999876 46888887742 3331 1 2356778888877665544
No 94
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=47.15 E-value=66 Score=29.96 Aligned_cols=62 Identities=21% Similarity=0.295 Sum_probs=45.2
Q ss_pred EEEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCccccccCCCCCCCccceEEeCCCcEEEEEEEc
Q 012467 330 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 409 (463)
Q Consensus 330 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~a 409 (463)
-+.++.|+.|++.+.+.+. .|. |+|-+.| ...| .-||....+.|.+
T Consensus 141 ~lvlP~~~~v~~~~tS~DV-------iHs-------f~vP~~~-----------------~k~d---aiPG~~~~~~~~~ 186 (228)
T MTH00008 141 RAVLPMQTEIRVLVTAADV-------IHS-------WTVPSLG-----------------VKVD---AVPGRLNQIGFTI 186 (228)
T ss_pred eEEEecCCEEEEEEEeCCc-------ccc-------ccccccC-----------------ccee---cCCCceEEEEEEe
Confidence 3789999999999999775 354 4444432 1223 3378888899999
Q ss_pred CCceeeeecccchHhH
Q 012467 410 DNPGAWAFHCHIEPHF 425 (463)
Q Consensus 410 dnpG~w~~HCHi~~H~ 425 (463)
+.||.+..-|.-.-..
T Consensus 187 ~~~G~~~g~Cse~CG~ 202 (228)
T MTH00008 187 TRPGVFYGQCSEICGA 202 (228)
T ss_pred CCCEEEEEEChhhcCc
Confidence 9999999999855433
No 95
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=46.83 E-value=51 Score=30.72 Aligned_cols=60 Identities=23% Similarity=0.395 Sum_probs=45.2
Q ss_pred EEEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCccccccCCCCCCCccceEEeCCCcEEEEEEEc
Q 012467 330 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 409 (463)
Q Consensus 330 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~a 409 (463)
.+.++.|+.+++.+...+.. |. |+|-+.| ..+|.+ ||-...+.|.+
T Consensus 141 ~l~lP~~~~v~~~~tS~DVi-------Hs-------f~vp~l~-----------------~k~dav---PG~~~~~~~~~ 186 (227)
T MTH00154 141 RLVLPMNTQIRILITAADVI-------HS-------WTVPSLG-----------------VKVDAV---PGRLNQLNFLI 186 (227)
T ss_pred eEEEecCCEEEEEEEcCchh-------hh-------eeccccC-----------------CeeecC---CCceEEEEEEE
Confidence 37899999999999987753 44 5554432 334544 68888899999
Q ss_pred CCceeeeecccchH
Q 012467 410 DNPGAWAFHCHIEP 423 (463)
Q Consensus 410 dnpG~w~~HCHi~~ 423 (463)
+.||.+.--|--.-
T Consensus 187 ~~~G~y~g~Cse~C 200 (227)
T MTH00154 187 NRPGLFFGQCSEIC 200 (227)
T ss_pred cCceEEEEEeechh
Confidence 99999999997443
No 96
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=44.99 E-value=71 Score=32.13 Aligned_cols=78 Identities=21% Similarity=0.233 Sum_probs=48.7
Q ss_pred CCCceEEEecCCCeEEEEEEecCcceEEEEEEeCceeEEEEeCCcccceeeEeeEEecCCceEEEEEecCCCCCCceEEE
Q 012467 112 QCAPQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWIS 191 (463)
Q Consensus 112 ~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~P~~~~~l~i~~GeR~dvlV~~~~~~~g~y~ir 191 (463)
.|.+..++|++|+ ++|.+.|.+... ++|.++ +|+.|. -..=.|+||.+..+.+++. +|+|.+.
T Consensus 40 ~c~p~~~tVpAG~-~~f~V~N~~~~~--------~Efe~~--~~~~vv---~e~EnIaPG~s~~l~~~L~---pGtY~~~ 102 (375)
T PRK10378 40 QCEPMTLTVNAGK-TQFIIQNHSQKA--------LEWEIL--KGVMVV---EERENIAPGFSQKMTANLQ---PGEYDMT 102 (375)
T ss_pred ccccCceeeCCCC-EEEEEEeCCCCc--------ceEEee--cccccc---ccccccCCCCceEEEEecC---CceEEee
Confidence 3445689999995 999999998544 334444 233220 0122789998888877773 5899875
Q ss_pred EEecCCCCCCCCeEEEEEeCC
Q 012467 192 AGVRGRKPATPPALTLLNYHP 212 (463)
Q Consensus 192 ~~~~~~~~~~~~~~a~l~y~~ 212 (463)
=.+. ....+.|.+.+
T Consensus 103 C~~~------~~~~g~l~Vtg 117 (375)
T PRK10378 103 CGLL------TNPKGKLIVKG 117 (375)
T ss_pred cCcC------CCCCceEEEeC
Confidence 3221 22256677765
No 97
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=42.22 E-value=68 Score=29.83 Aligned_cols=60 Identities=18% Similarity=0.376 Sum_probs=45.2
Q ss_pred EEEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCccccccCCCCCCCccceEEeCCCcEEEEEEEc
Q 012467 330 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 409 (463)
Q Consensus 330 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~a 409 (463)
.+.++.|+.+++.+...+.. |. |+|-+.| ...|.+ ||-...+.|.+
T Consensus 141 ~l~lP~~~~v~~~~tS~DVi-------Hs-------f~vP~lg-----------------~k~dai---PG~~n~~~~~~ 186 (225)
T MTH00168 141 RLVLPMDSKIRVLVTSADVL-------HS-------WTLPSLG-----------------LKMDAV---PGRLNQLAFLS 186 (225)
T ss_pred eEEEecCCEEEEEEEeCChh-------hc-------ccccccc-----------------ccccCC---CCeEEEEEEEc
Confidence 47899999999999987754 44 5554432 334544 78888899999
Q ss_pred CCceeeeecccchH
Q 012467 410 DNPGAWAFHCHIEP 423 (463)
Q Consensus 410 dnpG~w~~HCHi~~ 423 (463)
+.||.+.--|.-.-
T Consensus 187 ~~~G~~~g~CsE~C 200 (225)
T MTH00168 187 SRPGSFYGQCSEIC 200 (225)
T ss_pred CCCEEEEEEccccc
Confidence 99999999998543
No 98
>MTH00080 COX2 cytochrome c oxidase subunit II; Provisional
Probab=41.67 E-value=66 Score=30.04 Aligned_cols=58 Identities=14% Similarity=0.187 Sum_probs=44.1
Q ss_pred EEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCccccccCCCCCCCccceEEeCCCcEEEEEEEcC
Q 012467 331 YMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVAD 410 (463)
Q Consensus 331 ~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~ad 410 (463)
+.++.|+.+++.+...+.. |. |+|=+.| ...|.+ ||-...+.|.++
T Consensus 145 l~lP~~~~v~~~itS~DVi-------HS-------f~vP~lg-----------------~K~Dav---PGr~n~~~~~~~ 190 (231)
T MTH00080 145 CVLPCDTNIRFCITSSDVI-------HS-------WALPSLS-----------------IKMDAM---SGILSTLCYSFP 190 (231)
T ss_pred eEeecCcEEEEEEEeCccc-------cc-------ccccccC-----------------ceeecc---CCceEEEEEEEc
Confidence 7799999999999988754 54 5554432 334544 677888899999
Q ss_pred Cceeeeecccch
Q 012467 411 NPGAWAFHCHIE 422 (463)
Q Consensus 411 npG~w~~HCHi~ 422 (463)
.||.+.--|--.
T Consensus 191 ~~G~y~g~CsE~ 202 (231)
T MTH00080 191 MPGVFYGQCSEI 202 (231)
T ss_pred CceEEEEEehhh
Confidence 999999999743
No 99
>PF14734 DUF4469: Domain of unknown function (DUF4469) with IG-like fold
Probab=37.59 E-value=1.7e+02 Score=23.47 Aligned_cols=47 Identities=9% Similarity=0.103 Sum_probs=33.5
Q ss_pred eEEEEeCCcccceeeEeeEEecCCceEEEEEecCCCCCCceEEEEEec
Q 012467 148 MVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAGVR 195 (463)
Q Consensus 148 ~~via~DG~~v~P~~~~~l~i~~GeR~dvlV~~~~~~~g~y~ir~~~~ 195 (463)
+.++..|.+-..+...+.+...-..|..++|-++- +.|.|+|.+.+.
T Consensus 40 v~l~~~~~g~~~~v~~~~i~~N~ps~l~~~lPa~L-~~G~Y~l~V~Tq 86 (102)
T PF14734_consen 40 VFLVSDDEGTETKVPCSSIVRNKPSRLIFILPADL-AAGEYTLEVRTQ 86 (102)
T ss_pred EEEEcCCCCceEEecHHHeEeCCCcEEEEECcCcc-CceEEEEEEEEE
Confidence 44444444444566666788888899999998865 578999988654
No 100
>MTH00027 COX2 cytochrome c oxidase subunit II; Provisional
Probab=37.16 E-value=91 Score=29.74 Aligned_cols=59 Identities=20% Similarity=0.327 Sum_probs=44.9
Q ss_pred EEEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCccccccCCCCCCCccceEEeCCCcEEEEEEEc
Q 012467 330 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 409 (463)
Q Consensus 330 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~a 409 (463)
.+.++.|..+++.+...+.. | .|+|=+.| ..+|.+ ||-...+.|.+
T Consensus 175 ~lvlP~~~~v~~~ltS~DVi-------H-------Sf~vP~lg-----------------vK~Dai---PGr~n~~~~~~ 220 (262)
T MTH00027 175 RLILPVDTNVRVLITAADVL-------H-------SWTVPSLA-----------------VKMDAV---PGRINETGFLI 220 (262)
T ss_pred eEEEeeCcEEEEEEEcCccc-------c-------ceeccccc-----------------CcccCC---CCceeeEEEEc
Confidence 47899999999999887753 4 46665543 344544 57777889999
Q ss_pred CCceeeeecccch
Q 012467 410 DNPGAWAFHCHIE 422 (463)
Q Consensus 410 dnpG~w~~HCHi~ 422 (463)
+.||.+.-.|.-.
T Consensus 221 ~~~G~y~g~CsE~ 233 (262)
T MTH00027 221 KRPGIFYGQCSEI 233 (262)
T ss_pred CCcEEEEEEcchh
Confidence 9999999999844
No 101
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=36.62 E-value=1.3e+02 Score=28.16 Aligned_cols=62 Identities=21% Similarity=0.309 Sum_probs=45.7
Q ss_pred EEEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCccccccCCCCCCCccceEEeCCCcEEEEEEEc
Q 012467 330 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 409 (463)
Q Consensus 330 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~a 409 (463)
.+.++.|..|++.+...+.. |. |+|-+.| ..+|.+ ||-...+.|.+
T Consensus 152 ~lvlP~~~~v~~~~tS~DVi-------Hs-------f~iP~lg-----------------vK~Dai---PG~~n~~~~~~ 197 (240)
T MTH00023 152 RLVVPINTHVRILVTGADVL-------HS-------FAVPSLG-----------------LKIDAV---PGRLNQTGFFI 197 (240)
T ss_pred eEEEecCCEEEEEEEcCCcc-------cc-------eeecccC-----------------ceeecC---CCcceeEEEEc
Confidence 48899999999999987753 55 4454432 234433 67777889999
Q ss_pred CCceeeeecccchHhH
Q 012467 410 DNPGAWAFHCHIEPHF 425 (463)
Q Consensus 410 dnpG~w~~HCHi~~H~ 425 (463)
+.||.+.-.|.-.--.
T Consensus 198 ~~~G~y~g~C~e~CG~ 213 (240)
T MTH00023 198 KRPGVFYGQCSEICGA 213 (240)
T ss_pred CCCEEEEEEchhhcCc
Confidence 9999999999855443
No 102
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=34.45 E-value=1.8e+02 Score=23.95 Aligned_cols=60 Identities=15% Similarity=0.235 Sum_probs=34.5
Q ss_pred CceEEEecCCCeEEEEEEecCcceEEEEEEeCceeEEEEeCCcccceeeEeeEEecCCceEEEEEecCCCCCCceEEE
Q 012467 114 APQILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWIS 191 (463)
Q Consensus 114 ~~~~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~P~~~~~l~i~~GeR~dvlV~~~~~~~g~y~ir 191 (463)
.|..|+|++|.+++|..-+.+. . |.. .+.++.. .....+.+.+|++|++-++ + +|.|...
T Consensus 40 ~P~~ltV~~GdTVtw~~~~d~~--~-------HnV--~s~~~~~---f~s~~~~~~~G~t~s~Tf~--~--~G~Y~Y~ 99 (115)
T TIGR03102 40 DPPAIRVDPGTTVVWEWTGEGG--G-------HNV--VSDGDGD---LDESERVSEEGTTYEHTFE--E--PGIYLYV 99 (115)
T ss_pred eCCEEEECCCCEEEEEECCCCC--C-------EEE--EECCCCC---ccccccccCCCCEEEEEec--C--CcEEEEE
Confidence 4457999999998876432221 1 221 2223321 1223455678999999774 2 5787554
No 103
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=33.50 E-value=1.1e+02 Score=24.01 Aligned_cols=49 Identities=20% Similarity=0.396 Sum_probs=22.9
Q ss_pred eEEEEEEecCcceEEEEEEeCceeEEEEeCCccc--c-e-eeEeeEEecCCceEEE
Q 012467 125 TYRLRIASTTALASLNLAVKNHKMVVVEADGNYV--Q-P-FEVDDMDIYSGESYSV 176 (463)
Q Consensus 125 ~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v--~-P-~~~~~l~i~~GeR~dv 176 (463)
.|++||-|.+... +.|-.....|...||..- + + +.-..=.|.|||.|..
T Consensus 15 ~Y~I~I~N~~~~~---vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~Y 67 (90)
T PF04379_consen 15 AYRIRIENHSDES---VQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFEY 67 (90)
T ss_dssp EEEEEEEE-SSS----EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEEE
T ss_pred EEEEEEEECCCCC---EEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcEEE
Confidence 4788999988763 333344444444444211 0 0 0112336888987654
No 104
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=33.46 E-value=1.5e+02 Score=27.64 Aligned_cols=60 Identities=20% Similarity=0.300 Sum_probs=44.3
Q ss_pred EEEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCccccccCCCCCCCccceEEeCCCcEEEEEEEc
Q 012467 330 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 409 (463)
Q Consensus 330 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~a 409 (463)
.+.++.|+.|++.+.+.+.. |. |+|-+.| ...|. -||....+.|.+
T Consensus 145 ~lvlP~~~~v~~~itS~DVi-------Hs-------f~vp~lg-----------------~k~da---iPG~~~~~~~~~ 190 (234)
T MTH00051 145 RLIVPIQTQVRVLVTAADVL-------HS-------FAVPSLS-----------------VKIDA---VPGRLNQTSFFI 190 (234)
T ss_pred EEEEecCcEEEEEEEeCchh-------cc-------ccccccC-----------------ceeEc---cCCceEeEEEEe
Confidence 47899999999999998753 54 5554432 22333 368888889999
Q ss_pred CCceeeeecccchH
Q 012467 410 DNPGAWAFHCHIEP 423 (463)
Q Consensus 410 dnpG~w~~HCHi~~ 423 (463)
+.||.+..-|.-.-
T Consensus 191 ~~~G~y~g~Cse~C 204 (234)
T MTH00051 191 KRPGVFYGQCSEIC 204 (234)
T ss_pred CCCEEEEEEChhhc
Confidence 99999999998543
No 105
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=32.56 E-value=1.2e+02 Score=28.32 Aligned_cols=21 Identities=19% Similarity=0.518 Sum_probs=18.0
Q ss_pred CceEEEecCCCeEEEEEEecC
Q 012467 114 APQILHVQPNKTYRLRIASTT 134 (463)
Q Consensus 114 ~~~~~~v~~g~~~RlRliNa~ 134 (463)
.||.+++++|++..+|++..+
T Consensus 74 tPPl~rl~pg~~q~vRii~~~ 94 (230)
T PRK09918 74 TPPVARVEPGQSQQVRFILKS 94 (230)
T ss_pred cCCeEEECCCCceEEEEEECC
Confidence 356899999999999999765
No 106
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=32.00 E-value=1.8e+02 Score=27.17 Aligned_cols=62 Identities=15% Similarity=0.284 Sum_probs=45.6
Q ss_pred EEEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCccccccCCCCCCCccceEEeCCCcEEEEEEEc
Q 012467 330 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 409 (463)
Q Consensus 330 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~a 409 (463)
.+.++.|+.+++.+...+.. |. |+|-+.| ...|. -||....+.|.+
T Consensus 141 ~lvlP~~~~v~~~~tS~DVi-------Hs-------f~iP~lg-----------------~k~da---iPG~~~~~~~~~ 186 (230)
T MTH00185 141 RMVVPMESPIRVLITAEDVL-------HS-------WTVPALG-----------------VKMDA---VPGRLNQATFII 186 (230)
T ss_pred eEEEecCCEEEEEEEcCccc-------cc-------ccccccC-----------------ceeEe---cCCceEEEEEEe
Confidence 37899999999999987753 43 5555443 22333 368888889999
Q ss_pred CCceeeeecccchHhH
Q 012467 410 DNPGAWAFHCHIEPHF 425 (463)
Q Consensus 410 dnpG~w~~HCHi~~H~ 425 (463)
+.||.+.--|.-.-..
T Consensus 187 ~~~G~~~g~Cse~CG~ 202 (230)
T MTH00185 187 SRPGLYYGQCSEICGA 202 (230)
T ss_pred CCcEEEEEEchhhcCc
Confidence 9999999999865443
No 107
>KOG1554 consensus COP9 signalosome, subunit CSN5 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=30.81 E-value=35 Score=32.47 Aligned_cols=6 Identities=50% Similarity=1.099 Sum_probs=5.4
Q ss_pred EEEecc
Q 012467 12 YFYHGH 17 (463)
Q Consensus 12 ~WYHsH 17 (463)
=|||||
T Consensus 135 GWyHSH 140 (347)
T KOG1554|consen 135 GWYHSH 140 (347)
T ss_pred eeeecC
Confidence 499999
No 108
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=30.21 E-value=3.5e+02 Score=23.16 Aligned_cols=64 Identities=27% Similarity=0.310 Sum_probs=43.1
Q ss_pred CeEEEEEEecCcceEEEEEEeCceeEEEEeCCcccceeeE-------eeEEecCCceE-EEEEecCCCCCCceEEEEE
Q 012467 124 KTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEV-------DDMDIYSGESY-SVLLTTNQDPSYNYWISAG 193 (463)
Q Consensus 124 ~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~P~~~-------~~l~i~~GeR~-dvlV~~~~~~~g~y~ir~~ 193 (463)
.+|-|-+-|.|... +.++...++|+ +||+.+.|..+ +.+.|.|||=- .+.|.... .|.-.|.+.
T Consensus 70 ~t~t~yiKNtG~~~---~~fd~~sitVl-iDG~iv~~a~~~~~~~~gs~i~l~PG~Vg~ev~vn~~l--SGyhri~V~ 141 (154)
T COG3354 70 YTYTFYIKNTGSDS---IAFDNTSITVL-IDGNIVTPAYVTFTSVNGSSIRLSPGQVGREVTVNEAL--SGYHRIVVS 141 (154)
T ss_pred eEEEEEEecCCCcc---cccCCCeEEEE-EcCcEeccceEEEEecCCCeeEecCCceeeEEEeccCC--CcceEEEEE
Confidence 35778888888654 56777778776 89988876543 44678899876 66555543 355555554
No 109
>PF14016 DUF4232: Protein of unknown function (DUF4232)
Probab=30.20 E-value=1.3e+02 Score=25.04 Aligned_cols=55 Identities=16% Similarity=0.122 Sum_probs=38.2
Q ss_pred eEEEEEEecCcceEEEEEEeCc-eeEEEEeCCcccce------eeEeeEEecCCceEEEEEecCC
Q 012467 125 TYRLRIASTTALASLNLAVKNH-KMVVVEADGNYVQP------FEVDDMDIYSGESYSVLLTTNQ 182 (463)
Q Consensus 125 ~~RlRliNa~~~~~~~~~i~~h-~~~via~DG~~v~P------~~~~~l~i~~GeR~dvlV~~~~ 182 (463)
.++|.+-|.|...+ .|.|. .+.++..||..+.. .....+.|.||++.-+.|....
T Consensus 21 ~~~l~~tN~s~~~C---~l~G~P~v~~~~~~g~~~~~~~~~~~~~~~~vtL~PG~sA~a~l~~~~ 82 (131)
T PF14016_consen 21 HATLTFTNTSDTPC---TLYGYPGVALVDADGAPLGVPAVREGPPPRPVTLAPGGSAYAGLRWSN 82 (131)
T ss_pred EEEEEEEECCCCcE---EeccCCcEEEECCCCCcCCccccccCCCCCcEEECCCCEEEEEEEEec
Confidence 45899999998765 33333 35556788885521 1345699999999988888764
No 110
>PRK15249 fimbrial chaperone protein StbB; Provisional
Probab=29.32 E-value=82 Score=29.85 Aligned_cols=21 Identities=19% Similarity=0.487 Sum_probs=18.4
Q ss_pred CceEEEecCCCeEEEEEEecC
Q 012467 114 APQILHVQPNKTYRLRIASTT 134 (463)
Q Consensus 114 ~~~~~~v~~g~~~RlRliNa~ 134 (463)
.||.+++++|++..+||+..+
T Consensus 84 tPPlfrl~p~~~q~lRI~~~~ 104 (253)
T PRK15249 84 TPPVFRIQPKAGQVVRVIYNN 104 (253)
T ss_pred cCCeEEecCCCceEEEEEEcC
Confidence 456899999999999999876
No 111
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=28.74 E-value=1.9e+02 Score=26.19 Aligned_cols=57 Identities=16% Similarity=0.242 Sum_probs=38.9
Q ss_pred EEEecCCCeEEEEEEecCcceEEEEEEeCceeEEEEeCCcccceeeEeeEEecCCceEEEEEecCCCCCCceEEEEE
Q 012467 117 ILHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAG 193 (463)
Q Consensus 117 ~~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~P~~~~~l~i~~GeR~dvlV~~~~~~~g~y~ir~~ 193 (463)
.+.++.|+.+||++-+.... +.|.|.+.. -.+..-||..-.+-+++++ +|.|..+-.
T Consensus 118 ~l~vp~g~~v~~~~ts~DV~--Hsf~ip~~~----------------~k~da~PG~~~~~~~~~~~--~G~y~~~c~ 174 (201)
T TIGR02866 118 ELVVPAGTPVRLQVTSKDVI--HSFWVPELG----------------GKIDAIPGQYNALWFNADE--PGVYYGYCA 174 (201)
T ss_pred EEEEEcCCEEEEEEEeCchh--hcccccccC----------------ceEEecCCcEEEEEEEeCC--CEEEEEEeh
Confidence 68899999999998764432 333333322 1345668888888888876 689987653
No 112
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=28.71 E-value=1.9e+02 Score=26.85 Aligned_cols=62 Identities=13% Similarity=0.304 Sum_probs=46.1
Q ss_pred EEEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCccccccCCCCCCCccceEEeCCCcEEEEEEEc
Q 012467 330 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 409 (463)
Q Consensus 330 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~a 409 (463)
.+.++.|+.+++.+...+.. | .|+|-+.| ...|.+ ||....+.|.+
T Consensus 141 ~lvlP~~~~v~~~~tS~DVi-------H-------sf~vP~lg-----------------~K~Dav---PG~~n~~~~~~ 186 (227)
T MTH00117 141 RMVIPMESPIRILITAEDVL-------H-------SWAVPSLG-----------------VKTDAV---PGRLNQTSFIT 186 (227)
T ss_pred eEEEecCceEEEEEEecchh-------h-------cccccccC-----------------ceeEec---CCceEEEEEEE
Confidence 47899999999999987753 4 46665443 233433 68888899999
Q ss_pred CCceeeeecccchHhH
Q 012467 410 DNPGAWAFHCHIEPHF 425 (463)
Q Consensus 410 dnpG~w~~HCHi~~H~ 425 (463)
+.||.+.--|--.--.
T Consensus 187 ~~~G~y~g~CsE~CG~ 202 (227)
T MTH00117 187 TRPGVFYGQCSEICGA 202 (227)
T ss_pred cccceEEEEecccccc
Confidence 9999999999864433
No 113
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=28.44 E-value=1.8e+02 Score=24.37 Aligned_cols=49 Identities=14% Similarity=0.305 Sum_probs=28.1
Q ss_pred eEEEEEEecCcceEEEEEEeCceeEEEEeCCcccc----eeeEeeEEecCCceEEE
Q 012467 125 TYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQ----PFEVDDMDIYSGESYSV 176 (463)
Q Consensus 125 ~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~----P~~~~~l~i~~GeR~dv 176 (463)
.|++||-|-+... +.|-.....|...||..-+ -.....=.|.|||.|..
T Consensus 32 ~Y~ItI~N~~~~~---vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe~F~Y 84 (127)
T PRK05461 32 AYTITIENLGRVP---VQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGESFEY 84 (127)
T ss_pred EEEEEEEECCCCC---EEEEeeeEEEEECCCCEEEEECCceecCCceECCCCCeEE
Confidence 4789999977543 4444455555555554221 11123347888887765
No 114
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=28.37 E-value=3.5e+02 Score=22.58 Aligned_cols=93 Identities=20% Similarity=0.300 Sum_probs=58.8
Q ss_pred EEEccC-CCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCcc--c----cccCCCCC----CCccceEEeC
Q 012467 330 VYMLGL-NTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKE--D----EKKFNLKN----PPLKNTAVIF 398 (463)
Q Consensus 330 ~~~~~~-g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~--~----~~~~n~~~----p~~rDTv~v~ 398 (463)
-+.++. ++.+.++|.|.+.+ |--.=||.+ ||... +....- + ...-|+.. -+.-.|=+|.
T Consensus 17 ~i~V~a~~k~vtv~l~h~G~l--------pk~~MgHN~-Vl~k~-~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTklig 86 (125)
T TIGR02695 17 SISVPKSCKEFTVNLKHTGKL--------PKAVMGHNW-VLAKS-ADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIG 86 (125)
T ss_pred EEEEcCCCcEEEEEEecCCcC--------chhccCccE-EEecc-ccHHHHHHHHHhcccccCccCCCCcceEEEccccC
Confidence 377786 58999999998654 111124444 44432 222210 0 00111211 2355677888
Q ss_pred CCcEEEEEEEcC--Ccee-eeecccchHhHHccceeee
Q 012467 399 PYGWTALRFVAD--NPGA-WAFHCHIEPHFHIGMGVVL 433 (463)
Q Consensus 399 ~~g~~~irf~ad--npG~-w~~HCHi~~H~~~GM~~~~ 433 (463)
+|+...|.|.+. .+|. +.|=|-.--|.. .|-+.+
T Consensus 87 gGes~svtF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l 123 (125)
T TIGR02695 87 GGEKTSVTFDVSKLSAGEDYTFFCSFPGHWA-MMRGTV 123 (125)
T ss_pred CCceEEEEEECCCCCCCCcceEEEcCCCcHH-hceEEE
Confidence 999999999986 4785 999999999997 576665
No 115
>PF08329 ChitinaseA_N: Chitinase A, N-terminal domain; InterPro: IPR013540 This domain is found in a number of bacterial chitinases and similar viral proteins. It is organised into a fibronectin III module domain-like fold, comprising only beta strands. Its function is not known, but it may be involved in interaction with the enzyme substrate, chitin [, ]. It is separated by a hinge region from the catalytic domain (IPR001223 from INTERPRO); this hinge region is probably mobile, allowing the N-terminal domain to have different relative positions in solution []. ; GO: 0004568 chitinase activity; PDB: 2WLY_A 1EDQ_A 2WM0_A 1X6N_A 1NH6_A 2WK2_A 1EHN_A 2WLZ_A 1EIB_A 1FFR_A ....
Probab=28.19 E-value=1.2e+02 Score=25.72 Aligned_cols=43 Identities=16% Similarity=0.406 Sum_probs=25.5
Q ss_pred eEEEecCCCeE--EEEEEecCcceEEEEEEeCceeEEEEeCCcccceee
Q 012467 116 QILHVQPNKTY--RLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFE 162 (463)
Q Consensus 116 ~~~~v~~g~~~--RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~P~~ 162 (463)
..|.++.|.+| +.+|+|+.+-.. | +..++.|-.+||..+.|..
T Consensus 75 a~~~~~~gG~y~~~VeLCN~~GCS~---S-~~~~V~VaDTDGsHl~pL~ 119 (133)
T PF08329_consen 75 ATFTVTKGGRYQMQVELCNADGCST---S-APVEVVVADTDGSHLAPLP 119 (133)
T ss_dssp EEEEE-S-EEEEEEEEEEETTEEEE-------EEEEEE-TTSTTS----
T ss_pred EEEEecCCCEEEEEEEEECCCCccc---C-CCEEEEEeCCCcccccccc
Confidence 37899999887 778999987211 1 2456777799999998864
No 116
>PF14392 zf-CCHC_4: Zinc knuckle
Probab=27.79 E-value=91 Score=21.12 Aligned_cols=40 Identities=13% Similarity=0.080 Sum_probs=29.5
Q ss_pred CCCccce-EEeCCCcEEEEEEEcCCceeeeecccchHhHHc
Q 012467 388 NPPLKNT-AVIFPYGWTALRFVADNPGAWAFHCHIEPHFHI 427 (463)
Q Consensus 388 ~p~~rDT-v~v~~~g~~~irf~adnpG~w~~HCHi~~H~~~ 427 (463)
.|..+-+ |..+.|+...++++-..-..+=+||...-|...
T Consensus 5 kPL~~~i~v~~~~g~~~~~~v~YE~lp~~C~~C~~~gH~~~ 45 (49)
T PF14392_consen 5 KPLRREIKVKFPEGESFWVKVKYERLPRFCFHCGRIGHSDK 45 (49)
T ss_pred CcccceEEEEeCCCcEEEEEEEECCcChhhcCCCCcCcCHh
Confidence 3443433 334568888899998888899999999999763
No 117
>PRK09926 putative chaperone protein EcpD; Provisional
Probab=27.64 E-value=86 Score=29.55 Aligned_cols=22 Identities=14% Similarity=0.480 Sum_probs=19.0
Q ss_pred CceEEEecCCCeEEEEEEecCc
Q 012467 114 APQILHVQPNKTYRLRIASTTA 135 (463)
Q Consensus 114 ~~~~~~v~~g~~~RlRliNa~~ 135 (463)
.||.+++++|+...+||+..+.
T Consensus 80 tPPl~rl~p~~~q~lRIi~~~~ 101 (246)
T PRK09926 80 TPPVSRIDPKRGQTIKLMYTAS 101 (246)
T ss_pred cCCeEEECCCCccEEEEEeCCC
Confidence 3568999999999999998875
No 118
>PRK15299 fimbrial chaperone protein StiB; Provisional
Probab=27.39 E-value=92 Score=28.95 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=19.0
Q ss_pred CceEEEecCCCeEEEEEEecCc
Q 012467 114 APQILHVQPNKTYRLRIASTTA 135 (463)
Q Consensus 114 ~~~~~~v~~g~~~RlRliNa~~ 135 (463)
.||.+++++|++..+||+..+.
T Consensus 75 tPPl~rl~p~~~q~lRI~~~~~ 96 (227)
T PRK15299 75 TPPLFRLNGGQKNVLRIIRTGG 96 (227)
T ss_pred cCCeEEECCCCccEEEEEECCC
Confidence 3568999999999999998864
No 119
>TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG. Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum.
Probab=26.38 E-value=2.2e+02 Score=29.37 Aligned_cols=49 Identities=20% Similarity=0.249 Sum_probs=31.2
Q ss_pred eEEEEEEecCcc-eEEEEEEeCceeEEEEeCCcccceeeEeeEEecCCceEEEEEecC
Q 012467 125 TYRLRIASTTAL-ASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTN 181 (463)
Q Consensus 125 ~~RlRliNa~~~-~~~~~~i~~h~~~via~DG~~v~P~~~~~l~i~~GeR~dvlV~~~ 181 (463)
.|+++|+|.+.. ..+.|+++|.+ |..++- ..+.+.+.+||+.++.|...
T Consensus 349 ~Y~~~i~Nk~~~~~~~~l~v~g~~-------~~~~~~-~~~~i~v~~g~~~~~~v~v~ 398 (434)
T TIGR02745 349 TYTLKILNKTEQPHEYYLSVLGLP-------GIKIEG-PGAPIHVKAGEKVKLPVFLR 398 (434)
T ss_pred EEEEEEEECCCCCEEEEEEEecCC-------CcEEEc-CCceEEECCCCEEEEEEEEE
Confidence 478999998755 56777777642 222211 01278999999987666553
No 120
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=25.34 E-value=2.4e+02 Score=26.19 Aligned_cols=60 Identities=15% Similarity=0.326 Sum_probs=44.5
Q ss_pred EEEccCCCEEEEEEEeCCCCCCCCCCCCCeeecCCceEEEeecCCCCCccccccCCCCCCCccceEEeCCCcEEEEEEEc
Q 012467 330 VYMLGLNTTVDVILQNANAIRPNLSEIHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVA 409 (463)
Q Consensus 330 ~~~~~~g~~v~~vl~N~~~~~~~~~~~HP~HlHG~~f~vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~a 409 (463)
.+.++.|..+++.+...+.. |. |+|-+.| ...|.+ ||....+.|.+
T Consensus 141 ~l~lP~~~~v~~~~tS~DVi-------Hs-------f~vP~lg-----------------~k~da~---PG~~n~~~~~~ 186 (228)
T MTH00076 141 RMVVPMESPIRMLITAEDVL-------HS-------WAVPSLG-----------------IKTDAI---PGRLNQTSFIA 186 (228)
T ss_pred eEEEecCCEEEEEEEecccc-------cc-------ccccccC-----------------ceEEcc---CCcceeEEEEe
Confidence 48899999999999987753 44 5554432 223433 68888889999
Q ss_pred CCceeeeecccchH
Q 012467 410 DNPGAWAFHCHIEP 423 (463)
Q Consensus 410 dnpG~w~~HCHi~~ 423 (463)
+.||.+..-|.-.-
T Consensus 187 ~~~G~~~g~C~e~C 200 (228)
T MTH00076 187 SRPGVYYGQCSEIC 200 (228)
T ss_pred CCcEEEEEEChhhc
Confidence 99999999998644
No 121
>PRK15195 fimbrial chaperone protein FimC; Provisional
Probab=25.02 E-value=1.2e+02 Score=28.35 Aligned_cols=22 Identities=23% Similarity=0.427 Sum_probs=19.1
Q ss_pred CceEEEecCCCeEEEEEEecCc
Q 012467 114 APQILHVQPNKTYRLRIASTTA 135 (463)
Q Consensus 114 ~~~~~~v~~g~~~RlRliNa~~ 135 (463)
.||.+++++|++..+||+..+.
T Consensus 76 tPPlfrl~p~~~q~lRIi~~~~ 97 (229)
T PRK15195 76 TPPLFVSEPKSENTLRIIYAGP 97 (229)
T ss_pred cCCeEEECCCCceEEEEEECCC
Confidence 4568999999999999999864
No 122
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors. Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B ....
Probab=24.64 E-value=1.4e+02 Score=24.27 Aligned_cols=32 Identities=16% Similarity=0.382 Sum_probs=22.9
Q ss_pred ceEEEecCCCeEEEEEEecCc-----ceEEEEEEeCc
Q 012467 115 PQILHVQPNKTYRLRIASTTA-----LASLNLAVKNH 146 (463)
Q Consensus 115 ~~~~~v~~g~~~RlRliNa~~-----~~~~~~~i~~h 146 (463)
|+.+.+++|++..+||+..+. ...++|.+...
T Consensus 55 Pp~~~L~pg~~q~vRv~~~~~~~~~~E~~yrl~~~~i 91 (122)
T PF00345_consen 55 PPIFRLEPGESQTVRVYRGSKLPIDRESLYRLSFREI 91 (122)
T ss_dssp SSEEEEETTEEEEEEEEECSGS-SSS-EEEEEEEEEE
T ss_pred CCceEeCCCCcEEEEEEecCCCCCCceEEEEEEEEEE
Confidence 458999999999999988554 14466666544
No 123
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=24.39 E-value=73 Score=27.30 Aligned_cols=26 Identities=19% Similarity=0.324 Sum_probs=20.2
Q ss_pred eCCCcEEEEEEE-cCCc---eeeeecccch
Q 012467 397 IFPYGWTALRFV-ADNP---GAWAFHCHIE 422 (463)
Q Consensus 397 v~~~g~~~irf~-adnp---G~w~~HCHi~ 422 (463)
|+||..+.|.++ ..|| |.|+|+|-..
T Consensus 99 V~pG~tv~V~l~~v~NP~~~G~Y~f~v~a~ 128 (146)
T PF10989_consen 99 VPPGTTVTVVLSPVRNPRSGGTYQFNVTAF 128 (146)
T ss_pred CCCCCEEEEEEEeeeCCCCCCeEEEEEEEE
Confidence 678999999995 3464 9999998643
No 124
>PRK13202 ureB urease subunit beta; Reviewed
Probab=24.06 E-value=2.1e+02 Score=22.91 Aligned_cols=63 Identities=13% Similarity=0.114 Sum_probs=36.3
Q ss_pred EEEecCC--CeEEEEEEecCcceEEEEEEeCc--------eeEEEEeCCcccceeeEeeEEecCCceEEEEEec
Q 012467 117 ILHVQPN--KTYRLRIASTTALASLNLAVKNH--------KMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTT 180 (463)
Q Consensus 117 ~~~v~~g--~~~RlRliNa~~~~~~~~~i~~h--------~~~via~DG~~v~P~~~~~l~i~~GeR~dvlV~~ 180 (463)
.|.+.+| ++.+|++.|.| .+.+++.=+=| .|.--++=|-.+.=-....+.+-|||.-+|-+..
T Consensus 12 ~I~ln~grr~~~~l~V~NtG-DRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~ 84 (104)
T PRK13202 12 DIEMNAAALSRLQMRIINAG-DRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLVP 84 (104)
T ss_pred CEEeCCCCCceEEEEEEeCC-CCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEEE
Confidence 4778888 47899999999 56555433322 2222233333333223455777777777665543
No 125
>PF10636 hemP: Hemin uptake protein hemP; InterPro: IPR019600 This entry represents bacterial proteins that are involved in the uptake of the iron source hemin []. ; PDB: 2JRA_B 2LOJ_A.
Probab=24.05 E-value=1.3e+02 Score=19.39 Aligned_cols=18 Identities=28% Similarity=0.412 Sum_probs=13.7
Q ss_pred EEEecCCCeEEEEEEecC
Q 012467 117 ILHVQPNKTYRLRIASTT 134 (463)
Q Consensus 117 ~~~v~~g~~~RlRliNa~ 134 (463)
....-.|+.||||+-.++
T Consensus 15 v~I~H~g~~Y~LR~Tr~g 32 (38)
T PF10636_consen 15 VRIEHGGQIYRLRITRQG 32 (38)
T ss_dssp EEEEETTEEEEEEEETTT
T ss_pred EEEEeCCeEEEeeEccCC
Confidence 445567899999997765
No 126
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=23.46 E-value=3e+02 Score=22.51 Aligned_cols=72 Identities=19% Similarity=0.227 Sum_probs=36.7
Q ss_pred ecCCCeEEEEEEecCcceEEEEEEeCceeEEEEeCCccccee----eEeeEEecCCceEEEEEecCC-CCCCceEEEEEe
Q 012467 120 VQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPF----EVDDMDIYSGESYSVLLTTNQ-DPSYNYWISAGV 194 (463)
Q Consensus 120 v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~P~----~~~~l~i~~GeR~dvlV~~~~-~~~g~y~ir~~~ 194 (463)
+..|+.+++|+-=......-.+. -.+.+...||..|--. ....+....++++.+.++++. -.+|.|.|.+..
T Consensus 31 ~~~ge~~~i~i~~~~~~~i~~~~---~~~~i~~~~g~~v~~~~t~~~~~~~~~~~~g~~~~~~~i~~~L~~G~Y~i~v~l 107 (142)
T PF14524_consen 31 FESGEPIRIRIDYEVNEDIDDPV---FGFAIRDSDGQRVFGTNTYDSGFPIPLSEGGTYEVTFTIPKPLNPGEYSISVGL 107 (142)
T ss_dssp EETTSEEEEEEEEEESS-EEEEE---EEEEEEETT--EEEEEEHHHHT--EEE-TT-EEEEEEEEE--B-SEEEEEEEEE
T ss_pred EeCCCEEEEEEEEEECCCCCccE---EEEEEEcCCCCEEEEECccccCccccccCCCEEEEEEEEcCccCCCeEEEEEEE
Confidence 45677777775433322211111 2356667778666211 112344444888888888765 356999998865
No 127
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=23.11 E-value=2.7e+02 Score=28.69 Aligned_cols=38 Identities=24% Similarity=0.273 Sum_probs=27.5
Q ss_pred ceEEeCCCcEEEEEEEcCCceeeeec----ccchHhHHccce
Q 012467 393 NTAVIFPYGWTALRFVADNPGAWAFH----CHIEPHFHIGMG 430 (463)
Q Consensus 393 DTv~v~~~g~~~irf~adnpG~w~~H----CHi~~H~~~GM~ 430 (463)
=.+.+.|....++-|.++.||.|++- ||.+.-+..|=|
T Consensus 592 v~~~v~pq~tasvtf~a~kpgv~w~ycs~fchalh~em~~rm 633 (637)
T COG4263 592 VNMEVKPQRTASVTFYADKPGVAWYYCSWFCHALHMEMAGRM 633 (637)
T ss_pred eEEEEccCCceEEEEEccCCeeeehhhhhHHHHHHHhhccce
Confidence 34566678889999999999999864 565554555544
No 128
>cd01304 FMDH_A Formylmethanofuran dehydrogenase (FMDH) subunit A; Methanogenic bacteria and archea derive the energy for autotrophic growth from methanogenesis, the reduction of CO2 with molecular hydrogen as the electron donor. FMDH catalyzes the first step in methanogenesis, the formyl-methanofuran synthesis. In this step, CO2 is bound to methanofuran and subsequently reduced to the formyl state with electrons derived from hydrogen.
Probab=22.53 E-value=11 Score=39.73 Aligned_cols=53 Identities=19% Similarity=0.137 Sum_probs=31.1
Q ss_pred CCCeeecCCceEEEeecCCCCCccccccCCCCCCCccceEEeCCCcEEEEEEEcCCceeeeecccchHhHHccce
Q 012467 356 IHPWHLHGHDFWVLGRGEGKFTKEDEKKFNLKNPPLKNTAVIFPYGWTALRFVADNPGAWAFHCHIEPHFHIGMG 430 (463)
Q Consensus 356 ~HP~HlHG~~f~vl~~g~g~~~~~~~~~~n~~~p~~rDTv~v~~~g~~~irf~adnpG~w~~HCHi~~H~~~GM~ 430 (463)
+||+|+|++.. +. .|++.. -++|+.+..+--+.-++ .-+..+|+..|...|..
T Consensus 224 ph~iH~h~nnl---g~-pgn~~~------------t~~t~~~~~~~~~~~~~------~~~h~tH~qfhsyg~~~ 276 (541)
T cd01304 224 PHSIHVHCNNL---GV-PGNYET------------TLETMKAAEGVKPDPRR------QVLHLTHVQFHSYGGTS 276 (541)
T ss_pred ceEEEEccccC---CC-CCcHHH------------HHHHHHHhhcCCCcccc------ceeEeeeeeEEeeccCC
Confidence 89999999975 32 455542 24554443332211111 45677888888877764
No 129
>PF03443 Glyco_hydro_61: Glycosyl hydrolase family 61; InterPro: IPR005103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The only known activity within this family is that of endoglucanase (3.2.1.4 from EC) GH61 from CAZY ; PDB: 4EIS_B 2VTC_A 4EIR_B 3EJA_D 3EII_A.
Probab=22.42 E-value=3.2e+02 Score=25.23 Aligned_cols=92 Identities=13% Similarity=0.123 Sum_probs=46.4
Q ss_pred ccccccCCCCCCCceEEEecCCCeEEEEEEecC---cc-eEEEEEEe------------CceeEEEEeCCcccceee---
Q 012467 102 AEQCKLRGNEQCAPQILHVQPNKTYRLRIASTT---AL-ASLNLAVK------------NHKMVVVEADGNYVQPFE--- 162 (463)
Q Consensus 102 ~~~c~~~~~~~~~~~~~~v~~g~~~RlRliNa~---~~-~~~~~~i~------------~h~~~via~DG~~v~P~~--- 162 (463)
...|+... ......+++|++|.++-|.+-+.. .+ -.+.+-+. +....-|.-+|-.-....
T Consensus 48 di~Cn~~~-~~~~~~~~~V~AG~~I~f~w~~~~~~~~H~GP~~~Yma~~~~~~~~~d~~~~~WFKI~e~g~~~~~~~~~W 126 (218)
T PF03443_consen 48 DIRCNKGA-SPAATKAATVAAGDTITFEWHHGGWPHSHPGPVLVYMAKCPGDCATWDGSGLDWFKIYEDGLDDGGGKPGW 126 (218)
T ss_dssp HHHHSTTT-B--SS-EEEEETTSEEEEEEESST-ETTSSS-EEEEEEE-TSTTTT--CCCCEEEEEEEE-BCTTSSE-BB
T ss_pred ceeCCCCC-CCCccceeEeCCCCEEEEEEEecccCcCCCcceEEEeecCCcccccccCCCCeEEEEeeecccCCCCccce
Confidence 35777332 222334579999999999888642 22 22222221 223444555553332211
Q ss_pred EeeEEecCCceEEEEEecCCCCCCceEEEEEec
Q 012467 163 VDDMDIYSGESYSVLLTTNQDPSYNYWISAGVR 195 (463)
Q Consensus 163 ~~~l~i~~GeR~dvlV~~~~~~~g~y~ir~~~~ 195 (463)
....++.-+.+++|-|-.+- ++|+|-||.+..
T Consensus 127 ~~~~l~~~~~~~~~~IP~~l-~~G~YLlR~E~I 158 (218)
T PF03443_consen 127 ATDKLIANNGSWTFTIPKNL-PPGQYLLRHEII 158 (218)
T ss_dssp CCHHHHTTTCEEEEE--TTB-BSEEEEEEEEEE
T ss_pred ecchhhccCCceEEEeCCCC-CCCCceEEecce
Confidence 11122245667777665443 679999999764
No 130
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=22.02 E-value=1.5e+02 Score=27.82 Aligned_cols=22 Identities=27% Similarity=0.563 Sum_probs=19.5
Q ss_pred CceEEEecCCCeEEEEEEecCc
Q 012467 114 APQILHVQPNKTYRLRIASTTA 135 (463)
Q Consensus 114 ~~~~~~v~~g~~~RlRliNa~~ 135 (463)
.||.+++++|+...+||+..+.
T Consensus 79 tPPv~rl~p~~~q~vRi~~~~~ 100 (235)
T COG3121 79 TPPVFRLEPGQEQQLRILYTGN 100 (235)
T ss_pred cCCeEEECCCCccEEEEEecCC
Confidence 4578999999999999999984
No 131
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=21.55 E-value=2.2e+02 Score=21.90 Aligned_cols=40 Identities=15% Similarity=0.404 Sum_probs=25.0
Q ss_pred EecCCCeEEEEEEecCcceEEEEEEeCceeEEE-EeCCccc
Q 012467 119 HVQPNKTYRLRIASTTALASLNLAVKNHKMVVV-EADGNYV 158 (463)
Q Consensus 119 ~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~vi-a~DG~~v 158 (463)
.++||++.+|.+=..|....+++..+..+...+ ..||.+.
T Consensus 42 ~L~pGq~l~f~~d~~g~L~~L~~~~~~~~~~~~R~~DG~f~ 82 (85)
T PF04225_consen 42 RLKPGQTLEFQLDEDGQLTALRYERSPKTTLYTRQSDGSFS 82 (85)
T ss_dssp G--TT-EEEEEE-TTS-EEEEEEEEETTEEEEEE-TTS-EE
T ss_pred hCCCCCEEEEEECCCCCEEEEEEEcCCcEEEEEEeCCCCEE
Confidence 478999999998877878888888887655444 3577764
No 132
>PRK11385 putativi pili assembly chaperone; Provisional
Probab=21.55 E-value=1.8e+02 Score=27.25 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=18.6
Q ss_pred CceEEEecCCCeEEEEEEecC
Q 012467 114 APQILHVQPNKTYRLRIASTT 134 (463)
Q Consensus 114 ~~~~~~v~~g~~~RlRliNa~ 134 (463)
.||.+++++|+...|||+..+
T Consensus 83 tPPlfrl~p~~~q~lRIi~~~ 103 (236)
T PRK11385 83 APPLILLKPGTTGTLRLLRTE 103 (236)
T ss_pred cCCeEEECCCCceEEEEEECC
Confidence 457899999999999999886
No 133
>PRK15208 long polar fimbrial chaperone LpfB; Provisional
Probab=20.98 E-value=1.5e+02 Score=27.58 Aligned_cols=22 Identities=32% Similarity=0.604 Sum_probs=18.8
Q ss_pred CceEEEecCCCeEEEEEEecCc
Q 012467 114 APQILHVQPNKTYRLRIASTTA 135 (463)
Q Consensus 114 ~~~~~~v~~g~~~RlRliNa~~ 135 (463)
.||.+++++|++..+||+..+.
T Consensus 72 tPPl~rl~p~~~q~lRIi~~~~ 93 (228)
T PRK15208 72 TPPLFKLDPTKNNVLRIVNITN 93 (228)
T ss_pred CCCeEEECCCCccEEEEEECCC
Confidence 3568999999999999998764
No 134
>PRK15295 fimbrial assembly chaperone SthB; Provisional
Probab=20.74 E-value=1.8e+02 Score=26.96 Aligned_cols=22 Identities=14% Similarity=0.443 Sum_probs=18.9
Q ss_pred CceEEEecCCCeEEEEEEecCc
Q 012467 114 APQILHVQPNKTYRLRIASTTA 135 (463)
Q Consensus 114 ~~~~~~v~~g~~~RlRliNa~~ 135 (463)
.||.+++++|++..+||+..+.
T Consensus 71 tPPl~rl~p~~~q~lRI~~~~~ 92 (226)
T PRK15295 71 TPPLFRLDAGQKNSIRVIRSGA 92 (226)
T ss_pred cCCeEEECCCCceEEEEEECCC
Confidence 3568999999999999998763
No 135
>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg. pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....
Probab=20.38 E-value=1.9e+02 Score=25.36 Aligned_cols=55 Identities=16% Similarity=0.283 Sum_probs=37.1
Q ss_pred EEecCCCeEEEEEEecCcceEEEEEEeCceeEEEEeCCccc-----ceeeEeeEEecCCce
Q 012467 118 LHVQPNKTYRLRIASTTALASLNLAVKNHKMVVVEADGNYV-----QPFEVDDMDIYSGES 173 (463)
Q Consensus 118 ~~v~~g~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v-----~P~~~~~l~i~~GeR 173 (463)
+.+.. ++-+|+++|+|....+.+.-.+.....+...|.++ .++....+.+.+|.|
T Consensus 67 ~~~d~-~~~~l~~~~aG~~~~l~~~~~~~~~~~~~~~~~~lG~~~~~~~~~~~~~l~~gd~ 126 (193)
T PF07228_consen 67 AIIDP-ETGTLTYANAGHPPPLLLRPGGREIEQLESEGPPLGIFEDIDYQEQEIQLEPGDR 126 (193)
T ss_dssp EEEET-TTTEEEEEEESSSEEEEEETTCTEEEEETCSSBBCSSSCTTCEEEEEEE--TTEE
T ss_pred EEecc-cceEEEEeCCCCCCEEEEeccccceeecccCccceeeeccccccceEEEeccccE
Confidence 33444 44589999999888777776667788887777776 234556677777666
No 136
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=20.29 E-value=4e+02 Score=20.33 Aligned_cols=58 Identities=10% Similarity=0.067 Sum_probs=32.9
Q ss_pred CeEEEEEEecCcceEEEEEEeCceeEEEEeCCcccceeeEeeEEecCCceEEEEEecCCCCCCceEEEEE
Q 012467 124 KTYRLRIASTTALASLNLAVKNHKMVVVEADGNYVQPFEVDDMDIYSGESYSVLLTTNQDPSYNYWISAG 193 (463)
Q Consensus 124 ~~~RlRliNa~~~~~~~~~i~~h~~~via~DG~~v~P~~~~~l~i~~GeR~dvlV~~~~~~~g~y~ir~~ 193 (463)
..++|.|.|.|.. ...|.+. .... ......++.|.+|++.++.+.+.. ..|-|-+.+.
T Consensus 20 g~l~l~l~N~g~~-~~~~~v~-------~~~y---~~~~~~~~~v~ag~~~~~~w~l~~-s~gwYDl~v~ 77 (89)
T PF05506_consen 20 GNLRLTLSNPGSA-AVTFTVY-------DNAY---GGGGPWTYTVAAGQTVSLTWPLAA-SGGWYDLTVT 77 (89)
T ss_pred CEEEEEEEeCCCC-cEEEEEE-------eCCc---CCCCCEEEEECCCCEEEEEEeecC-CCCcEEEEEE
Confidence 4789999998743 3333333 2111 111235667777777777776643 3456666554
Done!