Query 012468
Match_columns 463
No_of_seqs 224 out of 978
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 02:57:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012468.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012468hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4683 Uncharacterized conser 100.0 8.3E-80 1.8E-84 609.4 16.2 433 1-455 108-543 (549)
2 COG4299 Uncharacterized protei 100.0 6.8E-66 1.5E-70 494.7 24.9 346 30-455 3-357 (371)
3 PF07786 DUF1624: Protein of u 99.8 8.7E-20 1.9E-24 175.8 18.4 113 34-158 1-118 (223)
4 COG2311 Predicted membrane pro 99.8 1.6E-17 3.5E-22 171.1 19.4 125 26-170 4-144 (394)
5 COG3503 Predicted membrane pro 99.7 3.3E-15 7.2E-20 147.4 17.3 258 33-401 14-295 (323)
6 PRK10835 hypothetical protein; 99.7 9.3E-15 2E-19 151.8 21.1 103 38-166 1-119 (373)
7 PF10129 OpgC_C: OpgC protein; 99.2 9.8E-09 2.1E-13 106.4 26.4 82 34-119 1-85 (358)
8 PF01757 Acyl_transf_3: Acyltr 98.5 3.7E-05 8E-10 74.7 23.9 54 36-89 2-61 (340)
9 PRK03854 opgC glucans biosynth 98.3 0.00064 1.4E-08 70.6 28.7 90 29-119 3-101 (375)
10 COG4645 Uncharacterized protei 98.3 0.00013 2.9E-09 73.9 21.4 85 26-114 15-102 (410)
11 PF06423 GWT1: GWT1; InterPro 98.1 3.4E-05 7.5E-10 69.5 11.4 120 288-410 2-135 (136)
12 PF04235 DUF418: Protein of un 97.9 0.0002 4.3E-09 65.9 12.3 98 311-410 6-108 (163)
13 COG3594 NolL Fucose 4-O-acetyl 96.8 0.29 6.2E-06 50.6 21.7 51 31-87 1-54 (343)
14 COG3274 Predicted O-acyltransf 96.7 0.55 1.2E-05 48.1 22.5 56 32-87 2-64 (332)
15 COG1835 Predicted acyltransfer 85.3 50 0.0011 34.3 25.0 66 29-100 9-76 (386)
16 COG5062 Uncharacterized membra 83.0 8 0.00017 40.3 9.4 111 288-401 266-379 (429)
17 PF15345 TMEM51: Transmembrane 67.3 4.6 0.0001 39.6 2.8 33 349-381 55-87 (233)
18 PF05857 TraX: TraX protein; 52.5 2.2E+02 0.0047 27.2 11.9 64 37-112 2-65 (219)
19 PF11654 DUF2665: Protein of u 39.2 38 0.00083 25.1 3.0 31 78-108 9-41 (47)
20 TIGR02230 ATPase_gene1 F0F1-AT 31.7 1.4E+02 0.003 25.7 5.7 25 290-314 42-68 (100)
21 COG3619 Predicted membrane pro 29.8 2.8E+02 0.006 27.3 8.3 56 65-122 51-106 (226)
22 PF07786 DUF1624: Protein of u 27.3 2.8E+02 0.006 26.3 7.8 19 383-401 203-221 (223)
23 PRK05771 V-type ATP synthase s 25.6 2.2E+02 0.0047 32.1 7.7 21 287-310 344-364 (646)
24 COG4763 Predicted membrane pro 24.8 23 0.00049 36.4 -0.2 62 24-88 11-76 (388)
25 PF02439 Adeno_E3_CR2: Adenovi 20.0 1.9E+02 0.004 20.6 3.6 25 357-381 10-34 (38)
No 1
>KOG4683 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=8.3e-80 Score=609.40 Aligned_cols=433 Identities=37% Similarity=0.657 Sum_probs=364.3
Q ss_pred CcccccccccCCCccccCCCcch-h-hhccccccchhHHHHHHHHHHHHHHHHHhcCCCCccccccCcccchhhhHHHHH
Q 012468 1 MSEIKAETTHHHPLIISEPDVSD-Q-QEKSHLKTQRLASLDIFRGLAVALMILVDHAGGDWPEISHAPWNGCNLADFVMP 78 (463)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~Rl~slD~lRGlai~~Milvn~~~~~~~~l~ha~w~G~t~~DlvfP 78 (463)
|.|||.|..|.+..--...+.+. + .++.++.++|+.|+|++||+++++||+||+.|+.||..+|++|||++++|.|+|
T Consensus 108 ~~~ik~~~~~d~~~~E~k~~~ss~~~~rsla~~r~RL~SLD~FRGltValMIlVdd~GG~~p~I~HapWnG~~LADfVmP 187 (549)
T KOG4683|consen 108 ALKIKSCAWRDYRYDEAKAAASSIGEARSLATQRKRLRSLDTFRGLTVALMILVDDGGGGYPWIEHAPWNGLHLADFVMP 187 (549)
T ss_pred HHHHhhccchhhhhccchhhhhhhhhhhhcCCCchhhhhhhhhcCceEEEEEEEecCCCCchhhhcCCcCCccHHHHHHH
Confidence 35788887766554322222222 3 444567778999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhHHHHHHHHHHHHHHH
Q 012468 79 FFLFIVGVAIALALKRIPDRADAVKKVIFRTLKLLFWGILLQGGFSHAPDELTYGVDVRMIRLCGVLQRIALSYLLVSLV 158 (463)
Q Consensus 79 ~Flfl~G~s~~ls~~r~~~~~~~~~~i~~R~~~L~~lGl~l~~~~~~~~~~~~~~~~~~~~r~~gVLqrIa~~Y~~~all 158 (463)
+|+|+||+|+++|.++...|.+..+|.--|..+|++.|++++.+|.++++++++|.|.+++|++|||||+|++|++.+++
T Consensus 188 fFLfIvGVsials~K~~s~rf~a~rKa~~R~cklllwgLflqGgf~h~~~nLTygidve~lR~mGILQr~~~ayLVvAi~ 267 (549)
T KOG4683|consen 188 FFLFIVGVSIALSVKSQSSRFSATRKAKARICKLLLWGLFLQGGFLHSMSNLTYGIDVEQLRIMGILQRFGVAYLVVAIL 267 (549)
T ss_pred HHHHHHHhhhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhcccCcccccCCccHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999999998888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCcccccchhhhhhhhHHHHHHHHHHHHHHHHHHhhccCCCCccccccCCCcCcCcccceeccccCCCCC-CC
Q 012468 159 EIFTKDVQDKDQSVGRFSIFRLYCWHWLMAACVLVVYLALLYGTYVPDWQFTIINKDSADYGKVFNVTCGVRAKLNP-PC 237 (463)
Q Consensus 159 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~y~~l~~~~~vp~~~~~~~~~~~~~~~~~~~v~~~~~g~l~~-~~ 237 (463)
..+..++. +... -+|-++....+..|.+..++..||+|.....+...+.+++.|.+.||.+|...+ .|
T Consensus 268 ~~~~~~~~--~~~~---------S~~R~V~~~~L~~~~~~~~~~~V~~~~~~~~~~~~~~~~r~~~~~~G~~~~~~~P~C 336 (549)
T KOG4683|consen 268 HTLCCRPI--SPQR---------SWQRAVHDVCLFSGELAVLLALVATYLGLTFGLRVPGCPRGYLGPGGKHDYNAHPKC 336 (549)
T ss_pred hhhccCCC--cccc---------chhhhhhHHHHHHHHHHHHHHhhhhhhceecccccCCCCcccccCCcccccCCCCCc
Confidence 88776521 2111 134455555555566555555566655544444444555656666777777655 59
Q ss_pred chhHHHHHHhhcccccccCCccccccccCCCCCCCCCCCCCCCCCCCCCcCCCcchhhHHHHHHHHHHHHHHHHHhcccc
Q 012468 238 NAVGYIDRKVLGINHMYHHPAWRRSKACTQDSPFEGPLRKDAPSWCHAPFEPEGLLSSVSSILSTIIGVHFGHVIIHTKG 317 (463)
Q Consensus 238 n~~~~iD~~llg~~Hly~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~dPeGlLstipai~~~llG~~aG~~l~~~~~ 317 (463)
|+++|.||+++|.+|+|++|+|+|.|+|+.|.|++|++|.++|+||..||||||++|+|.+++++++|+.+|+++.+.++
T Consensus 337 nAvGy~DrqvLGi~HiY~hP~~~r~k~cs~n~P~nG~l~~DAPSWCqapFdPEGilssi~avv~~llG~h~Ghiilh~k~ 416 (549)
T KOG4683|consen 337 NAVGYADRQVLGIAHIYQHPTAKRVKDCSINYPNNGPLPPDAPSWCQAPFDPEGILSSILAVVQVLLGAHAGHIILHHKN 416 (549)
T ss_pred cchhhhHHhhhhhHHHhcCchHHHhhhcccCCCCCCCCCCCCchhhcCCCChHHHHHHHHHHHHHHHHhhcCeEEEEccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHhcCccccchhhhhhchHHHHH
Q 012468 318 HLARLKQWVTMGFALLIFGLTLHFTNAIPLNKQLYTLSYVCVTSGAAALVFSAIYALVDIWNLKYPFLPLAWIGMNAMLV 397 (463)
Q Consensus 318 ~~~r~~~~l~~G~~ll~~G~ll~~~~~~PInK~lwT~Sfvl~t~G~a~l~La~~y~liDv~~~~~~~~pf~~~G~NaL~~ 397 (463)
+..|+++|...+..+.++|..++....+|.||++|+.||+++|+|++.++++.+|+++|++.|+....||.+.|||++.+
T Consensus 417 ~~sRir~wis~~~~l~llg~tL~~~s~~Plnk~L~slsfvCVT~~~A~Li~S~mY~~iDv~EW~~~~~P~~~~GMNAi~~ 496 (549)
T KOG4683|consen 417 FQSRIRRWISLAILLGLLGGTLCGFSAIPLNKNLWSLSFVCVTVSLALLILSLMYYFIDVREWSWSGYPFTECGMNAIVM 496 (549)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhhcccccchhHhHHHhhhhHHHHHHHHHHHHHHHHHhhHHHhhhccCChhhhccchhHH
Confidence 99999999999999988888887665789999999999999999999999999999999999888889999999999999
Q ss_pred HHHhhhhHHHHhhhhceecCCCchHHHHHHHHhccccccccchhhHHHHHHHHHHHHh
Q 012468 398 YVMAAEGIFAGFINGWYYGDPHNTLVCFLFIISYILHSFLWELRKFLYVQFCNLSWKF 455 (463)
Q Consensus 398 Yvl~~~~l~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~l~~~~~~~~ 455 (463)
||+| +++.++++ |+|+.+++|..-. .. +|++. -++.|+.++.++.++
T Consensus 497 YV~~--~vL~~~~~-W~~R~~~~~~H~~--l~--~~~t~----~~L~W~~i~~~~~~~ 543 (549)
T KOG4683|consen 497 YVGH--SVLHKMLP-WHWRIGEMNTHFM--LL--LEATW----NTLVWVGIALYLDAQ 543 (549)
T ss_pred HHhH--HHHHHhcc-hhhccCCCceeEE--Ee--eehhh----hhhhhhhhheeeehe
Confidence 9999 99999987 9999887754211 11 34333 458888887766543
No 2
>COG4299 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=6.8e-66 Score=494.69 Aligned_cols=346 Identities=29% Similarity=0.437 Sum_probs=297.2
Q ss_pred cccchhHHHHHHHHHHHHHHHHHhcCC---CCccccccCcccchhhhHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHH
Q 012468 30 LKTQRLASLDIFRGLAVALMILVDHAG---GDWPEISHAPWNGCNLADFVMPFFLFIVGVAIALALKRIPDRADAVKKVI 106 (463)
Q Consensus 30 ~~~~Rl~slD~lRGlai~~Milvn~~~---~~~~~l~ha~w~G~t~~DlvfP~Flfl~G~s~~ls~~r~~~~~~~~~~i~ 106 (463)
++.-|+.|+|++||+|+++||+||+.+ +.|+++.|++|+|+|++|+|||+|+|++|.+|+||.+|..+.++...++.
T Consensus 3 qpa~RltsLDvfRGlTv~lMilVN~ag~gd~~y~qL~HA~w~G~T~tDlVFP~FLF~vG~am~Fs~sk~~~~n~~tw~~~ 82 (371)
T COG4299 3 QPAFRLTSLDVFRGLTVLLMILVNNAGLGDSTYRQLSHAHWGGLTLTDLVFPWFLFCVGAAMPFSASKMNKANVTTWPLY 82 (371)
T ss_pred CchhhhhhHHHHhhhHHHHHHhhcccccccccccccccccccCCCHHHHHHHHHHHHHhhhccccccccCccCCcchHHH
Confidence 345899999999999999999999965 37999999999999999999999999999999999999888788889999
Q ss_pred HHHHHHHHHHHHHHhccCCCCcccccccc-ccchhhhhHHHHHHHHHHHHHHHHHHhccCCCcccccchhhhhhhhHHHH
Q 012468 107 FRTLKLLFWGILLQGGFSHAPDELTYGVD-VRMIRLCGVLQRIALSYLLVSLVEIFTKDVQDKDQSVGRFSIFRLYCWHW 185 (463)
Q Consensus 107 ~R~~~L~~lGl~l~~~~~~~~~~~~~~~~-~~~~r~~gVLqrIa~~Y~~~all~l~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (463)
||.+.+|++|++++.+ +...| +.++ .+..|.+||||||++||+++++...++++ ++|+
T Consensus 83 RRaa~~f~Lg~Lm~~F-~~~~~---ws~~~~s~tr~mGVLQrIaL~ylfAal~v~~L~~-----------------r~q~ 141 (371)
T COG4299 83 RRAAERFALGYLMGAF-VTVRD---WSVTSHSLTRGMGVLQRIALAYLFAALLVRQLRG-----------------RWQA 141 (371)
T ss_pred HHHHHHHHHHHHhhhc-cccce---eeeeechhhHHHHHHHHHHHHHHHHHHHHHhcCh-----------------HHHH
Confidence 9999999999999864 32221 1233 67899999999999999999999877754 5899
Q ss_pred HHHHHHHHHHHHHHhhccCCCCccccccCCCcCcCcccceeccccCCCCCCCchhHHHHHHhhcccccccCCcccccccc
Q 012468 186 LMAACVLVVYLALLYGTYVPDWQFTIINKDSADYGKVFNVTCGVRAKLNPPCNAVGYIDRKVLGINHMYHHPAWRRSKAC 265 (463)
Q Consensus 186 ~~~~~lL~~y~~l~~~~~vp~~~~~~~~~~~~~~~~~~~v~~~~~g~l~~~~n~~~~iD~~llg~~Hly~~p~~~~~~~~ 265 (463)
+.+.+++++||+.+...|+|+.+ ++...|.+.++|+...+.+|+|..
T Consensus 142 ~laavLL~gYwl~lm~~p~P~~~------------------------l~~~Gn~g~~~d~l~i~~~hLy~~--------- 188 (371)
T COG4299 142 LLAAVLLAGYWLFLMFTPHPAAP------------------------LGGIGNVGESADPLQILNDHLYSA--------- 188 (371)
T ss_pred HHHHHHHHHHHHHHhhcCCCccc------------------------cccccccccccchhhhhhhhhhcc---------
Confidence 99999999999888777777532 222458889999999999999963
Q ss_pred CCCCCCCCCCCCCCCCCCCCCcCCCcchhhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 012468 266 TQDSPFEGPLRKDAPSWCHAPFEPEGLLSSVSSILSTIIGVHFGHVIIHTKGHLARLKQWVTMGFALLIFGLTLHFTNAI 345 (463)
Q Consensus 266 ~~~~~~~g~~~~~~~~~~~~~~dPeGlLstipai~~~llG~~aG~~l~~~~~~~~r~~~~l~~G~~ll~~G~ll~~~~~~ 345 (463)
+ ..|||||++||+|+++.++.|++++|++++++.+.+....+.+.|+++.++|+.|.. .+
T Consensus 189 ------d------------G~~dpeGLlstvPttv~VLaGylaar~l~~~p~~~ra~l~la~~Gvvl~~~G~gW~~--~f 248 (371)
T COG4299 189 ------D------------GGFDPEGLLSTVPTTVLVLAGYLAARPLQQKPGNPRAPLLLAGLGVVLTALGYGWAG--RF 248 (371)
T ss_pred ------c------------CCCCchhhhhcchHHHHHHHHHHhhhHHhhCCCCCcchHHHHHHHHHHHHhcccccc--cc
Confidence 1 238999999999999999999999999998877777777889999999999999975 69
Q ss_pred CccccCCchHHHHHHHHHHHHHHHHHHHHHHhcCccccchhhhhhchHHHHHHHHhhhhHHHHhhhhceec----CCCch
Q 012468 346 PLNKQLYTLSYVCVTSGAAALVFSAIYALVDIWNLKYPFLPLAWIGMNAMLVYVMAAEGIFAGFINGWYYG----DPHNT 421 (463)
Q Consensus 346 PInK~lwT~Sfvl~t~G~a~l~La~~y~liDv~~~~~~~~pf~~~G~NaL~~Yvl~~~~l~~~~l~~~~~~----~~~~~ 421 (463)
||||++||+|||++|+|++.++++.||.+.|.+..+++..||+++|.|||..|+++ .++...+. ..|+ .|+.+
T Consensus 249 Pi~KkLWTssyvl~t~G~~llllaac~~l~e~~~~kr~~~pf~i~GlNalalyvls--~L~~v~l~-~~~g~getaps~~ 325 (371)
T COG4299 249 PISKKLWTSSYVLYTAGLGLLLLAACWVLAESPGGKRLLAPFTIPGLNALALYVLS--ILIKVWLL-LDWGVGETAPSQS 325 (371)
T ss_pred ccchhhcCCceeehhhhHHHHHHHHHHHHHcCcccCcCcCceeecCcchhHHHHHH--HHHHHHHh-hccccccccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999 77766553 2243 34434
Q ss_pred HHHHHHHHhc-cccccccchhhHHHHHHHHHHHHh
Q 012468 422 LVCFLFIISY-ILHSFLWELRKFLYVQFCNLSWKF 455 (463)
Q Consensus 422 ~~~~l~~~~~-~~~~~~~~~~s~~~~l~~~~~~~~ 455 (463)
.+|.+.|.+ -+.++.. ||++|++.+++.||-
T Consensus 326 -~~w~~~n~f~s~~g~~~--Gsll~aL~yvl~~Wl 357 (371)
T COG4299 326 -IAWSLLNMFRSSFGPVG--GSLLYALGYVLAVWL 357 (371)
T ss_pred -hhHHHHHHHHHhcCCCC--chhHHHHHHHHHHHH
Confidence 678877855 5666777 999999999998774
No 3
>PF07786 DUF1624: Protein of unknown function (DUF1624); InterPro: IPR012429 These sequences are found in hypothetical proteins of unknown function expressed by bacterial and archaeal species. The region in question is approximately 230 residues long.
Probab=99.84 E-value=8.7e-20 Score=175.83 Aligned_cols=113 Identities=33% Similarity=0.409 Sum_probs=88.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCC-Ccc-ccc-cC--cccchhhhHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHH
Q 012468 34 RLASLDIFRGLAVALMILVDHAGG-DWP-EIS-HA--PWNGCNLADFVMPFFLFIVGVAIALALKRIPDRADAVKKVIFR 108 (463)
Q Consensus 34 Rl~slD~lRGlai~~Milvn~~~~-~~~-~l~-ha--~w~G~t~~DlvfP~Flfl~G~s~~ls~~r~~~~~~~~~~i~~R 108 (463)
|+.++|++||+|+++|+++|.... .+. ..+ +. .+......|.++|.|+|++|+|++++.+|+.++ ++.+||
T Consensus 1 Ri~~lD~~RGlaii~Mi~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~ap~F~fl~G~s~~l~~~~~~~~----~~~~~R 76 (223)
T PF07786_consen 1 RIPSLDALRGLAIIGMILVHFLFDLNYFGGWPQSWFGSFFWRFFRGLAAPLFLFLAGISLALSTGRRRRR----RKFLKR 76 (223)
T ss_pred CcHHHHHHHHHHHHhhhHhhCcChHhhcCccchhhHhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccch----hHHHHH
Confidence 899999999999999999998653 111 111 21 123456789999999999999999999877665 788999
Q ss_pred HHHHHHHHHHHHhccCCCCccccccccccchhhhhHHHHHHHHHHHHHHH
Q 012468 109 TLKLLFWGILLQGGFSHAPDELTYGVDVRMIRLCGVLQRIALSYLLVSLV 158 (463)
Q Consensus 109 ~~~L~~lGl~l~~~~~~~~~~~~~~~~~~~~r~~gVLqrIa~~Y~~~all 158 (463)
.+.|+++|++++.... ...++...++||||+||+++++++++
T Consensus 77 ~~~l~~~g~~i~~~~~--------~~~~~~~i~~gIL~~ig~~~ll~~~~ 118 (223)
T PF07786_consen 77 GLKLFLLGLLINLLTF--------FFFPEGFIYFGILQFIGLSMLLAALF 118 (223)
T ss_pred HHHHHHHHHHHHHHHH--------HhcCCceeehhHHHHHHHHHHHHHHH
Confidence 9999999999986421 11234455779999999999999877
No 4
>COG2311 Predicted membrane protein [Function unknown]
Probab=99.77 E-value=1.6e-17 Score=171.05 Aligned_cols=125 Identities=25% Similarity=0.423 Sum_probs=96.8
Q ss_pred hccccccchhHHHHHHHHHHHHHHHHHhcCCCCccc----cccCcc-cch-----hhhHH-----HHHHHHHHHHHHHHH
Q 012468 26 EKSHLKTQRLASLDIFRGLAVALMILVDHAGGDWPE----ISHAPW-NGC-----NLADF-----VMPFFLFIVGVAIAL 90 (463)
Q Consensus 26 ~~~~~~~~Rl~slD~lRGlai~~Milvn~~~~~~~~----l~ha~w-~G~-----t~~Dl-----vfP~Flfl~G~s~~l 90 (463)
..|..+++|+.++|++||+|+++++++|.....+|. ..+..| .+. -+.|+ +.|.|.|++|+++.+
T Consensus 4 ~~p~~~~eRi~~LDilRG~AlLGILl~Ni~~F~~p~~~~~~~~~~~~s~~D~~a~~~v~~f~~~KF~~lFs~LFG~G~~~ 83 (394)
T COG2311 4 LQPTAQRERILTLDILRGFALLGILLVNISAFGYPGAAYLNPWSGWLSPLDAWAWALVDLFAQGKFLTLFSFLFGVGLAM 83 (394)
T ss_pred CCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHhCchHHHhCcCcccCChHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHH
Confidence 446678899999999999999999999985544431 113332 111 12333 379999999999999
Q ss_pred HhccCCchhHHH-HHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhHHHHHHHHHHHHHHHHHHhccCCCcc
Q 012468 91 ALKRIPDRADAV-KKVIFRTLKLLFWGILLQGGFSHAPDELTYGVDVRMIRLCGVLQRIALSYLLVSLVEIFTKDVQDKD 169 (463)
Q Consensus 91 s~~r~~~~~~~~-~~i~~R~~~L~~lGl~l~~~~~~~~~~~~~~~~~~~~r~~gVLqrIa~~Y~~~all~l~~~~~~~~~ 169 (463)
..+|+.+|++.. ...+||...|+++|++|..+.|. .||| +.|.+++++.+.++++++|+
T Consensus 84 ~~~r~~~~g~~~~~~~~RR~~~Lll~G~iH~~fiW~----------------GDIL----~~Ya~~g~ill~~~~~~~k~ 143 (394)
T COG2311 84 MLRRAARKGRRWVALYARRLLLLLLLGLIHALFIWD----------------GDIL----LAYALTGLILLLFRRRKPKT 143 (394)
T ss_pred HHHHHHHccCccHHHHHHHHHHHHHHHHHHHHHHhc----------------chHH----HHHHHHHHHHHHHHhccccH
Confidence 999988887654 55799999999999999865442 3999 99999999999999988875
Q ss_pred c
Q 012468 170 Q 170 (463)
Q Consensus 170 ~ 170 (463)
+
T Consensus 144 l 144 (394)
T COG2311 144 L 144 (394)
T ss_pred H
Confidence 3
No 5
>COG3503 Predicted membrane protein [Function unknown]
Probab=99.66 E-value=3.3e-15 Score=147.38 Aligned_cols=258 Identities=21% Similarity=0.293 Sum_probs=163.0
Q ss_pred chhHHHHHHHHHHHHHHHHHhcCCCC-c-cccccCcc-cc--hhhhHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHH
Q 012468 33 QRLASLDIFRGLAVALMILVDHAGGD-W-PEISHAPW-NG--CNLADFVMPFFLFIVGVAIALALKRIPDRADAVKKVIF 107 (463)
Q Consensus 33 ~Rl~slD~lRGlai~~Milvn~~~~~-~-~~l~ha~w-~G--~t~~DlvfP~Flfl~G~s~~ls~~r~~~~~~~~~~i~~ 107 (463)
+|+.+||++||++++.|++-|...+. + ...+-+.- .| ..++..+.|.|+|++|+|..++-+|+.+| .++..|
T Consensus 14 ~R~~~ID~LRGla~l~MalyHf~~dl~ffg~~dl~~ta~g~~r~~ar~~A~~FlFLaG~Sl~L~~~r~~~r---~~~l~k 90 (323)
T COG3503 14 NRLGEIDILRGLALLAMALYHFFWDLEFFGYMDLATTALGLWRYFARLIASSFLFLAGVSLSLSHSRGLRR---WRFLVK 90 (323)
T ss_pred cchhhhHHHhHHHHHHHHHHHHHhhhhhcCccccchhhhhHHHHHHHHHHHHHHHHHhhHheeeccccccc---hHHHHH
Confidence 89999999999999999999965431 1 11221111 11 24788999999999999999998776553 788999
Q ss_pred HHHHHHHHHHHHHhccCCCCccccccccccchhhhhHHHHHHHHHHHHHHHHHHhccCCCcccccchhhhhhhhHHHHHH
Q 012468 108 RTLKLLFWGILLQGGFSHAPDELTYGVDVRMIRLCGVLQRIALSYLLVSLVEIFTKDVQDKDQSVGRFSIFRLYCWHWLM 187 (463)
Q Consensus 108 R~~~L~~lGl~l~~~~~~~~~~~~~~~~~~~~r~~gVLqrIa~~Y~~~all~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (463)
|.++|.++++.+...-|. .+ ++++.++||||.||++.++...+ +++++. .+...
T Consensus 91 RgL~l~~l~l~It~~Twf-------~~-P~sfI~fgILh~igLa~ll~~~f-l~lP~~-----------------~~l~~ 144 (323)
T COG3503 91 RGLKLAALALAITAVTWF-------AF-PDSFIFFGILHAIGLASLLGAAF-LWLPRA-----------------VLLAL 144 (323)
T ss_pred HHHHHHHHHHHHHHeeeE-------ec-CCceehHHHHHHHHHHHHHHHHH-HhCchH-----------------HHHHH
Confidence 999999999999865221 12 46788899999999999877765 555431 34555
Q ss_pred HHHHHHHHHHHHhhccCCCCccccccCCCcCcCcccceeccccCCCCCCCchhHHHHHHhhcccccccCCccccccccCC
Q 012468 188 AACVLVVYLALLYGTYVPDWQFTIINKDSADYGKVFNVTCGVRAKLNPPCNAVGYIDRKVLGINHMYHHPAWRRSKACTQ 267 (463)
Q Consensus 188 ~~~lL~~y~~l~~~~~vp~~~~~~~~~~~~~~~~~~~v~~~~~g~l~~~~n~~~~iD~~llg~~Hly~~p~~~~~~~~~~ 267 (463)
++++++++..+.- .+ .+ .+..-|+ |.. .++ |
T Consensus 145 a~~~v~~~~lL~~---~~---------------------------f~--~~~l~w~-----g~~-~~~-~---------- 175 (323)
T COG3503 145 AVAAVAAHILLRP---AR---------------------------FG--TPMLWWL-----GLR-PYG-P---------- 175 (323)
T ss_pred HHHHHHhHHhcCc---cc---------------------------cC--CCchhhe-----eec-ccc-C----------
Confidence 5555554443321 00 00 1111122 110 011 1
Q ss_pred CCCCCCCCCCCCCCCCCCCcCCCcchhhHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH---HHH-----------
Q 012468 268 DSPFEGPLRKDAPSWCHAPFEPEGLLSSVSSILSTIIGVHFGHVIIHTKGHLARLKQWVTMGF---ALL----------- 333 (463)
Q Consensus 268 ~~~~~g~~~~~~~~~~~~~~dPeGlLstipai~~~llG~~aG~~l~~~~~~~~r~~~~l~~G~---~ll----------- 333 (463)
...|+- ..+||++.+++|+..|+.+...... +|.+....-+. .+.
T Consensus 176 -----------------r~~dy~---PLlPW~gv~LlG~a~g~~~~~~~~~-~r~~~~~~~~~~~ll~~~~G~~sl~~y~ 234 (323)
T COG3503 176 -----------------RTLDYY---PLLPWFGVFLLGIAFGNALRPGGPR-ARRRSPAALGLALLLLAFNGRHSLKPYL 234 (323)
T ss_pred -----------------cccCcC---ccccHHHHHHHHhhhhhhhcCCchh-hhhccccccccchhHHHHcCCCCCceee
Confidence 001211 3489999999999999988643322 22111111111 111
Q ss_pred -----HHHHHHHhhcCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHhcCccccchhhhhhchHHHHHHHHh
Q 012468 334 -----IFGLTLHFTNAIPLNKQLYTLSYVCVTSGAAALVFSAIYALVDIWNLKYPFLPLAWIGMNAMLVYVMA 401 (463)
Q Consensus 334 -----~~G~ll~~~~~~PInK~lwT~Sfvl~t~G~a~l~La~~y~liDv~~~~~~~~pf~~~G~NaL~~Yvl~ 401 (463)
++|+++ .+...|...+.-++..|.+.+ +.. |+.... +..+-+..+|..+++.|.+|
T Consensus 235 ihqp~li~lv~----~~~l~~~p~~~d~~~~~l~~c---~~a----~e~~~~-~~~~a~~~~~~~~l~~~~l~ 295 (323)
T COG3503 235 IHQPVLIGLVW----LFNLTKPPPSLDFVLLTLGLC---LLA----CERLPG-RGCSALCGCGLAPLFFYLLH 295 (323)
T ss_pred cCCCHHHHHHH----HHhcCCCCCcccHHHHHHHHH---HHH----HhcCCC-CCcchhhhcCcchHHHHHHH
Confidence 122222 245688899999999998554 232 233333 34889999999999999999
No 6
>PRK10835 hypothetical protein; Provisional
Probab=99.65 E-value=9.3e-15 Score=151.83 Aligned_cols=103 Identities=23% Similarity=0.319 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCccc-------ccc--Ccccch--hhhHH-----HHHHHHHHHHHHHHHHhccCCchhHH
Q 012468 38 LDIFRGLAVALMILVDHAGGDWPE-------ISH--APWNGC--NLADF-----VMPFFLFIVGVAIALALKRIPDRADA 101 (463)
Q Consensus 38 lD~lRGlai~~Milvn~~~~~~~~-------l~h--a~w~G~--t~~Dl-----vfP~Flfl~G~s~~ls~~r~~~~~~~ 101 (463)
+|++||+|+++++++|.+....+. ..+ +.+|.. .+.|+ .+|+|.+++|+++.+..+|.++
T Consensus 1 lD~lRGfALlGIllvNi~~f~~~~~~~~~~~~~~~~~~~d~~~~~~~~~f~~gKf~~LFs~LFG~G~~l~~~r~~~---- 76 (373)
T PRK10835 1 LDFVRGVAILGILLLNISAFGLPKAAYLNPAWYGAISPSDAWTWAILDLVAQVKFLTLFALLFGAGLQLLLPRGKR---- 76 (373)
T ss_pred CcHHHHHHHHHHHHHHHHHHhCccccccCccccCCCCchHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHhhhH----
Confidence 699999999999999964322211 111 011111 12222 3799999999999999875222
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCccccccccccchhhhhHHHHHHHHHHHHHHHHHHhccCC
Q 012468 102 VKKVIFRTLKLLFWGILLQGGFSHAPDELTYGVDVRMIRLCGVLQRIALSYLLVSLVEIFTKDVQ 166 (463)
Q Consensus 102 ~~~i~~R~~~L~~lGl~l~~~~~~~~~~~~~~~~~~~~r~~gVLqrIa~~Y~~~all~l~~~~~~ 166 (463)
...||+..|+++|++|....+. .||| ..|.+++++.+.+.+++
T Consensus 77 --~~~rRl~~Ll~~GliH~~llw~----------------GDIL----~~YAv~Gl~l~~~~~~~ 119 (373)
T PRK10835 77 --WIQSRLTLLVLLGFIHGLLFWD----------------GDIL----LAYGLVGLICWRLIRDA 119 (373)
T ss_pred --HHHHHHHHHHHHHHHHHHHHcc----------------chHH----HHHHHHHHHHHHHHhcc
Confidence 3569999999999999754332 2999 88999999988888764
No 7
>PF10129 OpgC_C: OpgC protein; InterPro: IPR014550 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=99.19 E-value=9.8e-09 Score=106.37 Aligned_cols=82 Identities=27% Similarity=0.363 Sum_probs=58.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCccccccCcccchhhhHHHHHHHHHHHHHHHHHHhccCCchh---HHHHHHHHHHH
Q 012468 34 RLASLDIFRGLAVALMILVDHAGGDWPEISHAPWNGCNLADFVMPFFLFIVGVAIALALKRIPDRA---DAVKKVIFRTL 110 (463)
Q Consensus 34 Rl~slD~lRGlai~~Milvn~~~~~~~~l~ha~w~G~t~~DlvfP~Flfl~G~s~~ls~~r~~~~~---~~~~~i~~R~~ 110 (463)
|...||.+||++++.|..-|.+++.+..+.+.++ .+.|- .-.|+|++|++..+.+.|+.+|+ ...+|+.||+.
T Consensus 1 Rd~riD~~RGlaL~~Ifi~Hip~~~~~~~T~~~~---Gfsda-AE~FVflSG~~~gl~Y~~~~~~~g~~~~~~r~~~Ra~ 76 (358)
T PF10129_consen 1 RDLRIDFFRGLALVMIFIDHIPGNVLEWFTLRNF---GFSDA-AEGFVFLSGYAAGLAYGRRFRRRGLWAATRRLWRRAW 76 (358)
T ss_pred CchHHHHHHHHHHHHHHHHhcCCcHHHHhccccc---cCCCc-chhHhhHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHH
Confidence 7788999999999777666666655443444443 34342 35899999999999998765432 45688999998
Q ss_pred HHHHHHHHH
Q 012468 111 KLLFWGILL 119 (463)
Q Consensus 111 ~L~~lGl~l 119 (463)
+|...-+++
T Consensus 77 ~lY~a~i~l 85 (358)
T PF10129_consen 77 QLYVAHIAL 85 (358)
T ss_pred HHHHHHHHH
Confidence 887766554
No 8
>PF01757 Acyl_transf_3: Acyltransferase family; InterPro: IPR002656 This entry contains a range of acyltransferase enzymes as well as yet uncharacterised proteins from Caenorhabditis elegans. It also includes the protein OatA. The pathogenic bacteria, Staphylococcus aureus, is able to cause persistent infections due to its ability to resist the immune defence system. Lysozyme, a cell wall-lytic enzyme, is one of the first defence compounds induced in serum and tissues after the onset of infection. S. aureus has complete resistance to lysozyme action by O-acetylating its peptidoglycan (PG) by O-acetyltransferase (OatA) [, ]. Staphylococcus bacteria are one of the only bacterial genera that are resistant to lysozyme and tend to colonise the skin and mucosa of humans and animals []. OatA is an integral membrane protein. This entry also includes NolL proteins. NolL-dependent acetylation is specific for the fucosyl penta-N-acetylglucosamine species. In addition, the NolL protein caused elevated production of lipo-chitin oligosaccharides (LCOs). The NolL protein obtained from Rhizobium loti (Mesorhizobium loti) functions as an acetyl transferase [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups
Probab=98.54 E-value=3.7e-05 Score=74.73 Aligned_cols=54 Identities=26% Similarity=0.416 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCccc-cccCcccc--h---hhhHHHHHHHHHHHHHHHH
Q 012468 36 ASLDIFRGLAVALMILVDHAGGDWPE-ISHAPWNG--C---NLADFVMPFFLFIVGVAIA 89 (463)
Q Consensus 36 ~slD~lRGlai~~Milvn~~~~~~~~-l~ha~w~G--~---t~~DlvfP~Flfl~G~s~~ 89 (463)
.++|.+||++++++++.|........ ........ . .......|.|.+++|..+.
T Consensus 2 ~~iD~lR~ia~l~Vv~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ff~iSG~~~~ 61 (340)
T PF01757_consen 2 YWIDGLRGIAILLVVFGHSFIFYFPPPFQGWPIFDSFSIFLFIGRFAVPLFFFISGYLLA 61 (340)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhcccccccchhhhhHhhhhhhhhhHHHHHHHHHHHHHH
Confidence 57999999999999998875421110 01110000 0 3456678999999999998
No 9
>PRK03854 opgC glucans biosynthesis protein; Provisional
Probab=98.34 E-value=0.00064 Score=70.65 Aligned_cols=90 Identities=22% Similarity=0.197 Sum_probs=56.8
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHhcCC--CCcc----ccccCcccch-h-hhH-HHHHHHHHHHHHHHHHHhccCCchh
Q 012468 29 HLKTQRLASLDIFRGLAVALMILVDHAG--GDWP----EISHAPWNGC-N-LAD-FVMPFFLFIVGVAIALALKRIPDRA 99 (463)
Q Consensus 29 ~~~~~Rl~slD~lRGlai~~Milvn~~~--~~~~----~l~ha~w~G~-t-~~D-lvfP~Flfl~G~s~~ls~~r~~~~~ 99 (463)
+++++|...+|.+||+++++.++.|... .... ..+.+.|... . ..+ .-.|.|.+++|+....+.+|+. .+
T Consensus 3 ~~~~~R~~~lD~lR~~a~l~VV~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~mplFf~iSG~~~~~~~~~~~-~~ 81 (375)
T PRK03854 3 PVPAQREYFLDSIRAWLMLLGIPFHISLIYSSHTWHVNSAEPSLWLTLLNDFIHAFRMQVFFVISGYFSYMLFLRYP-PK 81 (375)
T ss_pred CCccchhhhHHHHHHHHHHHHHHHHHHHHhccccccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-HH
Confidence 4456899999999999999999988632 1110 0111222111 0 111 2379999999999888765543 34
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 012468 100 DAVKKVIFRTLKLLFWGILL 119 (463)
Q Consensus 100 ~~~~~i~~R~~~L~~lGl~l 119 (463)
+-.++=++|.+.-++++..+
T Consensus 82 ~f~~~R~~rl~iP~l~~~~~ 101 (375)
T PRK03854 82 RWLKVRLERVGIPMLTAIPL 101 (375)
T ss_pred HHHHHHHHHhhHHHHHHHHH
Confidence 45566677777767766443
No 10
>COG4645 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.30 E-value=0.00013 Score=73.87 Aligned_cols=85 Identities=24% Similarity=0.387 Sum_probs=62.0
Q ss_pred hccccccchhHHHHHHHHHHHHHHHHHhcCCCCccccccCcccchhhhHHHHHHHHHHHHHHHHHHhccCCchh-HH--H
Q 012468 26 EKSHLKTQRLASLDIFRGLAVALMILVDHAGGDWPEISHAPWNGCNLADFVMPFFLFIVGVAIALALKRIPDRA-DA--V 102 (463)
Q Consensus 26 ~~~~~~~~Rl~slD~lRGlai~~Milvn~~~~~~~~l~ha~w~G~t~~DlvfP~Flfl~G~s~~ls~~r~~~~~-~~--~ 102 (463)
+..+...+|.+.||++||++++.|.+-|.++..++.+.|.+. .+.|- .-.|+|++|+++.+++.|+.-++ +. .
T Consensus 15 ~~~~v~mkRdtriDv~Ral~Lv~IfiNHvpgt~le~itHknf---gfsda-AEaFVliSGllvgmaYsrKf~~ggrla~~ 90 (410)
T COG4645 15 ERRAVPMKRDTRIDVFRALALVTIFINHVPGTILEEITHKNF---GFSDA-AEAFVLISGLLVGMAYSRKFMKGGRLAGT 90 (410)
T ss_pred ccccCccCchhHHHHHHHHHHHHHHHhcccHHHHHHhhcccc---ccccc-chhhhhHHHHHHHHHHhhhhccCcHHHHH
Confidence 333445689999999999999888665556655555677664 23332 25799999999999998776443 33 3
Q ss_pred HHHHHHHHHHHH
Q 012468 103 KKVIFRTLKLLF 114 (463)
Q Consensus 103 ~~i~~R~~~L~~ 114 (463)
.|+.||+..|..
T Consensus 91 lkiWrRA~~LY~ 102 (410)
T COG4645 91 LKIWRRAMVLYV 102 (410)
T ss_pred HHHHHHHHHHHH
Confidence 588999998876
No 11
>PF06423 GWT1: GWT1; InterPro: IPR009447 Glycosylphosphatidylinositol (GPI) is a conserved post-translational modification to anchor cell surface proteins to plasma membrane in eukaryotes. GWT1 is involved in GPI anchor biosynthesis; it is required for inositol acylation in yeast [].; GO: 0016746 transferase activity, transferring acyl groups, 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=98.10 E-value=3.4e-05 Score=69.48 Aligned_cols=120 Identities=18% Similarity=0.277 Sum_probs=84.3
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHhcccchH------H---HHHHHHHHHHHHHHHHHHHHhhcCCCccccCCchHHHH
Q 012468 288 EPEGLLSSVSSILSTIIGVHFGHVIIHTKGHL------A---RLKQWVTMGFALLIFGLTLHFTNAIPLNKQLYTLSYVC 358 (463)
Q Consensus 288 dPeGlLstipai~~~llG~~aG~~l~~~~~~~------~---r~~~~l~~G~~ll~~G~ll~~~~~~PInK~lwT~Sfvl 358 (463)
.-||++|.+.-++.-++|...|+.+.+.+... + ...+++.+.+++.++-.+++. ...|++.++...+|++
T Consensus 2 NrEGi~S~~GY~aIyl~g~~~G~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~vSRRlaNl~Yvl 80 (136)
T PF06423_consen 2 NREGIFSLPGYLAIYLIGVSLGRYILPPSSSSNSSSRRQWIKLLIKLLILSFIFWALYYLLNS-YIEPVSRRLANLPYVL 80 (136)
T ss_pred CcchhhhHHHHHHHHHHHHHHhhhhhCCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHh-CCCchhHHhcchHHHH
Confidence 35999999999999999999999765433222 2 222344444444333344432 3689999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCccc-----cchhhhhhchHHHHHHHHhhhhHHHHhh
Q 012468 359 VTSGAAALVFSAIYALVDIWNLKY-----PFLPLAWIGMNAMLVYVMAAEGIFAGFI 410 (463)
Q Consensus 359 ~t~G~a~l~La~~y~liDv~~~~~-----~~~pf~~~G~NaL~~Yvl~~~~l~~~~l 410 (463)
.+.+.....++.++.+-++....+ ...-++.+.+|.|++|+++ .++..++
T Consensus 81 wv~a~n~~~l~~~~~i~~~~~~~~~~~~~~~~l~~aiN~N~L~~FLla--NllTGlV 135 (136)
T PF06423_consen 81 WVLAFNTFFLALYLLIELLLFRPKASYSKTPCLLDAINRNGLFVFLLA--NLLTGLV 135 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccccHHHHHHcccccHHHHHH--HHHHccc
Confidence 999998877777655444433222 3567889999999999999 7776543
No 12
>PF04235 DUF418: Protein of unknown function (DUF418); InterPro: IPR007349 Tihs is a probable integral membrane protein. It is usually found associated with (IPR007299 from INTERPRO).
Probab=97.88 E-value=0.0002 Score=65.89 Aligned_cols=98 Identities=17% Similarity=0.169 Sum_probs=59.7
Q ss_pred HHhcccchHHHHHHHHHHHHHHHHHHHHHHh-----hcCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHhcCccccch
Q 012468 311 VIIHTKGHLARLKQWVTMGFALLIFGLTLHF-----TNAIPLNKQLYTLSYVCVTSGAAALVFSAIYALVDIWNLKYPFL 385 (463)
Q Consensus 311 ~l~~~~~~~~r~~~~l~~G~~ll~~G~ll~~-----~~~~PInK~lwT~Sfvl~t~G~a~l~La~~y~liDv~~~~~~~~ 385 (463)
++.+.+++++..++.+.+++...+...+... ....+.+....+....+.....+....+++..+++..+.++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~y~~l~~ll~~~~~~~~~~~ 85 (163)
T PF04235_consen 6 FFERPEEHRKLLRRLLLIGLAVGLPLALLSAASWLSAWPSPPAAHLSSVLYMLGGPLLALGYVALLILLCQKRPRQRLLR 85 (163)
T ss_pred hccChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 4544555566666655555443222222211 00112233333333333445566666777778888887777899
Q ss_pred hhhhhchHHHHHHHHhhhhHHHHhh
Q 012468 386 PLAWIGMNAMLVYVMAAEGIFAGFI 410 (463)
Q Consensus 386 pf~~~G~NaL~~Yvl~~~~l~~~~l 410 (463)
||...|++|+++|++| +++...+
T Consensus 86 ~l~~~GrmaLT~Yi~q--sii~~~l 108 (163)
T PF04235_consen 86 PLAAVGRMALTNYILQ--SIIGTLL 108 (163)
T ss_pred HHHHHhhHHHHHHHHH--HHHHHHH
Confidence 9999999999999999 8887765
No 13
>COG3594 NolL Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism]
Probab=96.83 E-value=0.29 Score=50.63 Aligned_cols=51 Identities=25% Similarity=0.442 Sum_probs=35.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHHhcCCCCccccccCcccch---hhhHHHHHHHHHHHHHH
Q 012468 31 KTQRLASLDIFRGLAVALMILVDHAGGDWPEISHAPWNGC---NLADFVMPFFLFIVGVA 87 (463)
Q Consensus 31 ~~~Rl~slD~lRGlai~~Milvn~~~~~~~~l~ha~w~G~---t~~DlvfP~Flfl~G~s 87 (463)
+++|..++|+.||+-|++.++-|..+... +|.-. -..-.-+|+|.|++|.-
T Consensus 1 ~~~R~~~~D~AKGigIlLVV~GH~~~p~~------~~~~~l~~~IysFHMPlFf~ISGyf 54 (343)
T COG3594 1 MKKRDLWFDAAKGIGILLVVFGHILQPIS------PWLSVLYKFIYSFHMPLFFFISGYF 54 (343)
T ss_pred CchhHHHHhHhhccchhhhhhhhhccccc------ccchHHHHHHHHHHHHHHHhhhhhc
Confidence 46899999999999999999888654211 13211 11223389999999974
No 14
>COG3274 Predicted O-acyltransferase [General function prediction only]
Probab=96.74 E-value=0.55 Score=48.06 Aligned_cols=56 Identities=18% Similarity=0.364 Sum_probs=39.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHhcCCC-Ccccc-ccC-cc---cch-hhhHHHHHHHHHHHHHH
Q 012468 32 TQRLASLDIFRGLAVALMILVDHAGG-DWPEI-SHA-PW---NGC-NLADFVMPFFLFIVGVA 87 (463)
Q Consensus 32 ~~Rl~slD~lRGlai~~Milvn~~~~-~~~~l-~ha-~w---~G~-t~~DlvfP~Flfl~G~s 87 (463)
.+|+.++|.+|++|++..+.+|.... .++.. .|. .| |+. +..-.+.|+|..+.|.-
T Consensus 2 ~~ri~wiD~~r~iA~f~VV~iH~~~~~~t~~~~vs~~~w~i~nvlns~sr~aVPLFfmISGyL 64 (332)
T COG3274 2 QPRIVWIDLLRSIACFMVVMIHSTLWSVTEAHFVSPTLWIIANVLNSASRVAVPLFFMISGYL 64 (332)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999998888887532 23222 222 14 443 45566799999999965
No 15
>COG1835 Predicted acyltransferases [Lipid metabolism]
Probab=85.34 E-value=50 Score=34.33 Aligned_cols=66 Identities=24% Similarity=0.289 Sum_probs=43.7
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHhcCCCCccccccCcc--cchhhhHHHHHHHHHHHHHHHHHHhccCCchhH
Q 012468 29 HLKTQRLASLDIFRGLAVALMILVDHAGGDWPEISHAPW--NGCNLADFVMPFFLFIVGVAIALALKRIPDRAD 100 (463)
Q Consensus 29 ~~~~~Rl~slD~lRGlai~~Milvn~~~~~~~~l~ha~w--~G~t~~DlvfP~Flfl~G~s~~ls~~r~~~~~~ 100 (463)
...++|+.++|.+||+|++..++.|......+ ++..+ +|..-.| .|..++|.-+.-...++.++++
T Consensus 9 ~~~~~~~~~ldgLR~iAal~Vv~~H~~~~~~~--~~~g~~~~g~~gVd----iFFvlSGfli~~~~~~~~~~~~ 76 (386)
T COG1835 9 NSSGGRLPGLDGLRAIAALLVVLYHAGFQIGP--GPGGFVGRGVLGVD----LFFVLSGFLITRSLLRSAAAPV 76 (386)
T ss_pred cccccccCCcHHHHHHHHHHHHHHHccccccC--CCCcccccccccee----EeeeccHHHHHHHHHHHhhcCC
Confidence 34468999999999999999888886532111 11111 2222333 6889999999998766554444
No 16
>COG5062 Uncharacterized membrane protein [Function unknown]
Probab=83.00 E-value=8 Score=40.25 Aligned_cols=111 Identities=20% Similarity=0.234 Sum_probs=63.0
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCchHHHHHHHHHHHH
Q 012468 288 EPEGLLSSVSSILSTIIGVHFGHVIIHTKG-HLARLKQWVTMGFALLIFGLTLHFTNAIPLNKQLYTLSYVCVTSGAAAL 366 (463)
Q Consensus 288 dPeGlLstipai~~~llG~~aG~~l~~~~~-~~~r~~~~l~~G~~ll~~G~ll~~~~~~PInK~lwT~Sfvl~t~G~a~l 366 (463)
+-||+.+.+|-++..+.|.-.|+.....+. .++.++.|...-+..+.+=.+.++. -.. +.++-...|++...-+-.+
T Consensus 266 NrEGI~sll~yisIfl~g~~tg~vvf~~kpTr~~~wk~~~~~~af~lciylVfnf~-s~s-sRRlaNlpfv~wi~~lh~f 343 (429)
T COG5062 266 NREGITSLLPYISIFLMGADTGKVVFKKKPTRKKAWKIIILYNAFFLCVYLVFNFY-STS-SRRLANLPFVMWIMLLHTF 343 (429)
T ss_pred chhhhhhcchhhhheeeecccceEEecCCCchHHHHHHHHHHHHHHHHHHHHHhhc-ccc-hhhhcCccHHHHHHHHHHH
Confidence 679999999999999999999996544333 2333444332211111111122321 112 6777788898887655543
Q ss_pred HHHHHHHHHHhc--CccccchhhhhhchHHHHHHHHh
Q 012468 367 VFSAIYALVDIW--NLKYPFLPLAWIGMNAMLVYVMA 401 (463)
Q Consensus 367 ~La~~y~liDv~--~~~~~~~pf~~~G~NaL~~Yvl~ 401 (463)
- ...|.++|.. .+.+-..-|+-.-+|-++++...
T Consensus 344 ~-lt~y~lfd~ts~~yn~v~~~fes~n~n~llvfs~a 379 (429)
T COG5062 344 H-LTVYELFDRTSKIYNLVMHRFESKNLNFLLVFSNA 379 (429)
T ss_pred H-hheeeeeecccchhhhHHHHHHhcccchHHHHHHH
Confidence 3 3346677752 12333444555566666666555
No 17
>PF15345 TMEM51: Transmembrane protein 51
Probab=67.32 E-value=4.6 Score=39.56 Aligned_cols=33 Identities=27% Similarity=0.442 Sum_probs=27.0
Q ss_pred ccCCchHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 012468 349 KQLYTLSYVCVTSGAAALVFSAIYALVDIWNLK 381 (463)
Q Consensus 349 K~lwT~Sfvl~t~G~a~l~La~~y~liDv~~~~ 381 (463)
++--|..|||+-+|+++++|++|.-+=|.++.+
T Consensus 55 sKt~SVAyVLVG~Gv~LLLLSICL~IR~KRr~r 87 (233)
T PF15345_consen 55 SKTFSVAYVLVGSGVALLLLSICLSIRDKRRRR 87 (233)
T ss_pred ceeEEEEEehhhHHHHHHHHHHHHHHHHHHHHh
Confidence 344567799999999999999998888876644
No 18
>PF05857 TraX: TraX protein; InterPro: IPR008875 This family consists of several bacterial TraX proteins. TraX is responsible for the N-terminal acetylation of F-pilin subunits [].
Probab=52.55 E-value=2.2e+02 Score=27.23 Aligned_cols=64 Identities=19% Similarity=0.277 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCccccccCcccchhhhHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHH
Q 012468 37 SLDIFRGLAVALMILVDHAGGDWPEISHAPWNGCNLADFVMPFFLFIVGVAIALALKRIPDRADAVKKVIFRTLKL 112 (463)
Q Consensus 37 slD~lRGlai~~Milvn~~~~~~~~l~ha~w~G~t~~DlvfP~Flfl~G~s~~ls~~r~~~~~~~~~~i~~R~~~L 112 (463)
|-|.+.=+|++.|++=|.. ... .++.+| -....-+.||.|.|++.-++.- .++.+|.++|....
T Consensus 2 s~~~LK~iA~i~M~iDHi~-~~~--~~~~~~-~~~iGR~afPlF~f~~~eG~~~--------T~n~~kY~~RL~~~ 65 (219)
T PF05857_consen 2 SGFQLKIIAIIAMLIDHIG-FLF--FPDGPW-LRIIGRIAFPLFAFLLVEGFFH--------TRNRKKYLLRLLIF 65 (219)
T ss_pred chhHHHHHHHHHHHHHhhc-ccc--cCcchH-HHHhhHHHHHHHHHHHHHHHhh--------hhhHHHHHHHHHHH
Confidence 4588888999999886554 211 233333 1235567899999998877543 33446677775543
No 19
>PF11654 DUF2665: Protein of unknown function (DUF2665); InterPro: IPR024242 This entry represents the non classical export protein 1 family. Family members are Involved in a novel pathway of export of proteins that lack a cleavable signal sequence [].; GO: 0009306 protein secretion
Probab=39.19 E-value=38 Score=25.12 Aligned_cols=31 Identities=16% Similarity=0.414 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHhccCCch--hHHHHHHHHH
Q 012468 78 PFFLFIVGVAIALALKRIPDR--ADAVKKVIFR 108 (463)
Q Consensus 78 P~Flfl~G~s~~ls~~r~~~~--~~~~~~i~~R 108 (463)
|+|...+|++-++..+++..+ +.....+++|
T Consensus 9 P~~av~iG~~ayyl~e~R~~rp~g~~L~eLl~~ 41 (47)
T PF11654_consen 9 PLFAVFIGTSAYYLYENREGRPEGHSLNELLRR 41 (47)
T ss_pred hHHHHHHHHHHHHHHHHhccCCCCCcHHHHHHH
Confidence 899999999999999876543 4445455443
No 20
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=31.66 E-value=1.4e+02 Score=25.71 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=16.6
Q ss_pred CcchhhHH--HHHHHHHHHHHHHHHhc
Q 012468 290 EGLLSSVS--SILSTIIGVHFGHVIIH 314 (463)
Q Consensus 290 eGlLstip--ai~~~llG~~aG~~l~~ 314 (463)
-|+++++. .++.+++|++.|+||-+
T Consensus 42 l~~~g~IG~~~v~pil~G~~lG~WLD~ 68 (100)
T TIGR02230 42 LGMFGLIGWSVAIPTLLGVAVGIWLDR 68 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556665 34677788888888754
No 21
>COG3619 Predicted membrane protein [Function unknown]
Probab=29.82 E-value=2.8e+02 Score=27.30 Aligned_cols=56 Identities=27% Similarity=0.306 Sum_probs=39.5
Q ss_pred CcccchhhhHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHhc
Q 012468 65 APWNGCNLADFVMPFFLFIVGVAIALALKRIPDRADAVKKVIFRTLKLLFWGILLQGG 122 (463)
Q Consensus 65 a~w~G~t~~DlvfP~Flfl~G~s~~ls~~r~~~~~~~~~~i~~R~~~L~~lGl~l~~~ 122 (463)
++++.....+...|.+.|++|+...-.++|+..| .....+.+...++++++.....
T Consensus 51 ~~~~~~~a~~~~~pii~Fv~Gv~~~~~~~r~~~~--~~~~~l~~~~~ll~~~v~~~~~ 106 (226)
T COG3619 51 AEGDAALAVLLLLPILAFVLGVAAAELISRRATR--SFIPVLLLVSLLLALIALLALG 106 (226)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHHHHHHh
Confidence 4445566778899999999999988888765544 2334566667777777766543
No 22
>PF07786 DUF1624: Protein of unknown function (DUF1624); InterPro: IPR012429 These sequences are found in hypothetical proteins of unknown function expressed by bacterial and archaeal species. The region in question is approximately 230 residues long.
Probab=27.31 E-value=2.8e+02 Score=26.32 Aligned_cols=19 Identities=32% Similarity=0.794 Sum_probs=17.3
Q ss_pred cchhhhhhchHHHHHHHHh
Q 012468 383 PFLPLAWIGMNAMLVYVMA 401 (463)
Q Consensus 383 ~~~pf~~~G~NaL~~Yvl~ 401 (463)
..+++.+.|+++|.+|++|
T Consensus 203 ~~~~l~~~G~~sL~iY~~h 221 (223)
T PF07786_consen 203 LIRPLAFLGRHSLLIYLIH 221 (223)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4578999999999999998
No 23
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=25.56 E-value=2.2e+02 Score=32.14 Aligned_cols=21 Identities=19% Similarity=0.555 Sum_probs=12.6
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHH
Q 012468 287 FEPEGLLSSVSSILSTIIGVHFGH 310 (463)
Q Consensus 287 ~dPeGlLstipai~~~llG~~aG~ 310 (463)
.||.-++.. ....++|+..|.
T Consensus 344 iDPT~~~ai---~f~lfFGmM~gD 364 (646)
T PRK05771 344 IDPTPFLAI---FFPLFFGMMLGD 364 (646)
T ss_pred cCCccHHHH---HHHHHHHHHHHh
Confidence 588766532 235667776664
No 24
>COG4763 Predicted membrane protein [Function unknown]
Probab=24.77 E-value=23 Score=36.40 Aligned_cols=62 Identities=19% Similarity=0.373 Sum_probs=40.2
Q ss_pred hhhccccccchhHHHHHHHHHHHHHHHHHhcCCCCcc---ccccCcccchhhhHH-HHHHHHHHHHHHH
Q 012468 24 QQEKSHLKTQRLASLDIFRGLAVALMILVDHAGGDWP---EISHAPWNGCNLADF-VMPFFLFIVGVAI 88 (463)
Q Consensus 24 ~~~~~~~~~~Rl~slD~lRGlai~~Milvn~~~~~~~---~l~ha~w~G~t~~Dl-vfP~Flfl~G~s~ 88 (463)
||..-+++|+|..-+|...|++|++.++.|..-..|+ .+.|-- + .+.|- =+|.|....|.-.
T Consensus 11 apdgfamnk~rm~W~d~aKGlsI~lVV~~h~~~~~y~g~~tf~h~l-~--~~l~p~rmP~Ffl~sg~F~ 76 (388)
T COG4763 11 APDGFAMNKQRMLWIDQAKGLSICLVVIYHSVITFYPGGTTFQHPL-S--EVLSPCRMPYFFLYSGPFR 76 (388)
T ss_pred CCCccccCcccCcchhhhcCeeEEeeeeehheeeecCCCchhHhHH-H--HhhchhhhHHHHHHhhHHH
Confidence 4555567789999999999999999887765433333 133321 1 12232 3788888777543
No 25
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=20.03 E-value=1.9e+02 Score=20.60 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCcc
Q 012468 357 VCVTSGAAALVFSAIYALVDIWNLK 381 (463)
Q Consensus 357 vl~t~G~a~l~La~~y~liDv~~~~ 381 (463)
+-++.|++.+.+..+|+.+-.|+.+
T Consensus 10 v~V~vg~~iiii~~~~YaCcykk~~ 34 (38)
T PF02439_consen 10 VAVVVGMAIIIICMFYYACCYKKHR 34 (38)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccc
Confidence 3457899999999999999887654
Done!