Query 012468
Match_columns 463
No_of_seqs 224 out of 978
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 10:01:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012468.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012468hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jb0_J Photosystem 1 reaction 9.5 2E+02 0.0068 19.8 2.4 20 293-312 8-27 (41)
2 3n2f_G Na+/K+ ATPase gamma sub 9.4 1.1E+02 0.0037 19.8 1.0 28 64-91 4-31 (31)
3 2jo1_A Phospholemman; FXYD1, N 7.1 3.7E+02 0.013 20.6 3.3 29 65-93 11-39 (72)
4 2zxe_G FXYD10, phospholemman-l 6.3 3.1E+02 0.011 21.2 2.5 30 64-93 13-42 (74)
5 2jp3_A FXYD domain-containing 6.3 3.6E+02 0.012 20.4 2.8 29 65-93 12-40 (67)
6 3r2j_A Alpha/beta-hydrolase-li 5.2 1.4E+02 0.0048 27.6 -0.1 24 8-31 3-26 (227)
7 2klu_A T-cell surface glycopro 4.6 1.1E+03 0.039 17.7 4.9 23 357-379 12-34 (70)
8 4ev6_A Magnesium transport pro 4.2 1.5E+03 0.052 21.4 6.8 54 320-376 277-334 (339)
9 2l9u_A Receptor tyrosine-prote 4.0 6.7E+02 0.023 16.6 2.6 17 36-52 8-24 (40)
10 2ww9_B Protein transport prote 3.4 5.6E+02 0.019 20.0 2.1 23 326-349 54-77 (80)
No 1
>1jb0_J Photosystem 1 reaction centre subunit IX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.18.1 PDB: 3pcq_J*
Probab=9.46 E-value=2e+02 Score=19.81 Aligned_cols=20 Identities=20% Similarity=0.328 Sum_probs=16.1
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 012468 293 LSSVSSILSTIIGVHFGHVI 312 (463)
Q Consensus 293 Lstipai~~~llG~~aG~~l 312 (463)
|||-|.+++..++..||-++
T Consensus 8 LstAPVla~~w~~~tAg~lI 27 (41)
T 1jb0_J 8 LSTAPVLAAIWMTITAGILI 27 (41)
T ss_dssp TTBHHHHHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHH
Confidence 68888888888888888654
No 2
>3n2f_G Na+/K+ ATPase gamma subunit transcript variant A; sodium-potassium pump, P-type ATPase, cardiotonic steroids,; HET: PHD; 4.10A {Sus scrofa} PDB: 3n23_G*
Probab=9.38 E-value=1.1e+02 Score=19.83 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=19.8
Q ss_pred cCcccchhhhHHHHHHHHHHHHHHHHHH
Q 012468 64 HAPWNGCNLADFVMPFFLFIVGVAIALA 91 (463)
Q Consensus 64 ha~w~G~t~~DlvfP~Flfl~G~s~~ls 91 (463)
|-.|+..-...+++-.-+|++|+.+.+|
T Consensus 4 ~yDy~tLrigGLi~a~vLfi~gi~iils 31 (31)
T 3n2f_G 4 YYDYETVRNGGLIFAALAFIVGLIIILS 31 (31)
T ss_dssp CCCHHHHHHHHTTTHHHHHHHHHHHHTC
T ss_pred CCChHHHhhcchhHHHHHHHHHHHHhcC
Confidence 3456666666777778888888877653
No 3
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=7.13 E-value=3.7e+02 Score=20.59 Aligned_cols=29 Identities=24% Similarity=0.505 Sum_probs=23.5
Q ss_pred CcccchhhhHHHHHHHHHHHHHHHHHHhc
Q 012468 65 APWNGCNLADFVMPFFLFIVGVAIALALK 93 (463)
Q Consensus 65 a~w~G~t~~DlvfP~Flfl~G~s~~ls~~ 93 (463)
-.|+-+-..-|+|-..+|++|+.+.+|-+
T Consensus 11 YDY~tLRiGGLifA~vLfi~GI~iilS~K 39 (72)
T 2jo1_A 11 YDYQSLQIGGLVIAGILFILGILIVLSRR 39 (72)
T ss_dssp CSTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHhhccchHHHHHHHHHHHHHHHcCc
Confidence 34555566788899999999999999975
No 4
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=6.33 E-value=3.1e+02 Score=21.15 Aligned_cols=30 Identities=20% Similarity=0.339 Sum_probs=24.2
Q ss_pred cCcccchhhhHHHHHHHHHHHHHHHHHHhc
Q 012468 64 HAPWNGCNLADFVMPFFLFIVGVAIALALK 93 (463)
Q Consensus 64 ha~w~G~t~~DlvfP~Flfl~G~s~~ls~~ 93 (463)
|-.|+.+-..-|+|-..+|++|+.+.+|-+
T Consensus 13 ~YDY~tLRigGLifA~vLfi~GI~iilS~k 42 (74)
T 2zxe_G 13 TYDYYRLRVVGLIVAAVLCVIGIIILLAGK 42 (74)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccchHHheeccchhHHHHHHHHHHHHHcCc
Confidence 344555667788999999999999999875
No 5
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=6.27 E-value=3.6e+02 Score=20.42 Aligned_cols=29 Identities=31% Similarity=0.539 Sum_probs=23.5
Q ss_pred CcccchhhhHHHHHHHHHHHHHHHHHHhc
Q 012468 65 APWNGCNLADFVMPFFLFIVGVAIALALK 93 (463)
Q Consensus 65 a~w~G~t~~DlvfP~Flfl~G~s~~ls~~ 93 (463)
-.|+-+-..-|+|-..+|++|+.+.+|-+
T Consensus 12 YDY~tLRigGLifA~vLfi~GI~iilS~k 40 (67)
T 2jp3_A 12 YDWESLQLGGLIFGGLLCIAGIALALSGK 40 (67)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred cchHHheecchhhHHHHHHHHHHHHHcCc
Confidence 34555667788999999999999999874
No 6
>3r2j_A Alpha/beta-hydrolase-like protein; nicotinamidase, cytoplasmic; 2.68A {Leishmania infantum}
Probab=5.19 E-value=1.4e+02 Score=27.57 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=0.8
Q ss_pred cccCCCccccCCCcchhhhccccc
Q 012468 8 TTHHHPLIISEPDVSDQQEKSHLK 31 (463)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~ 31 (463)
..|||.+++|..||.+.-+.+++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~ 26 (227)
T 3r2j_A 3 HHHHHHVGTGSNDDDDKSPDPPTL 26 (227)
T ss_dssp ----------------------CC
T ss_pred cccccccCCCCCCCCccCcCCCCC
Confidence 358888999999888754444433
No 7
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=4.57 E-value=1.1e+03 Score=17.70 Aligned_cols=23 Identities=13% Similarity=0.250 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Q 012468 357 VCVTSGAAALVFSAIYALVDIWN 379 (463)
Q Consensus 357 vl~t~G~a~l~La~~y~liDv~~ 379 (463)
+.+-+++++++|+.+-.++-++-
T Consensus 12 ivlGg~~~lll~~glcI~ccvkc 34 (70)
T 2klu_A 12 IVLGGVAGLLLFIGLGIFFSVRS 34 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHhHHHHHHHHHHHHHHHhhHH
Confidence 44455566666666666656643
No 8
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=4.21 E-value=1.5e+03 Score=21.39 Aligned_cols=54 Identities=7% Similarity=0.027 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh----cCCCccccCCchHHHHHHHHHHHHHHHHHHHHHH
Q 012468 320 ARLKQWVTMGFALLIFGLTLHFT----NAIPLNKQLYTLSYVCVTSGAAALVFSAIYALVD 376 (463)
Q Consensus 320 ~r~~~~l~~G~~ll~~G~ll~~~----~~~PInK~lwT~Sfvl~t~G~a~l~La~~y~liD 376 (463)
+.++.+-+++++++...++-+.. ..+|--+..| .|..+.+..+ ++-.++|++.-
T Consensus 277 ~~mk~LTiit~IflP~T~IaGiyGMNf~~mPel~~~~--gy~~~l~~m~-~~~~~~~~~fk 334 (339)
T 4ev6_A 277 QIMKILTMVTTIFAVPMWITGIYGMNFSYLPLANNPQ--GFWLVMALMV-VIIMIFVYIFR 334 (339)
T ss_dssp HHHHHHHHHHHHSSHHHHHHHHTTCCCSCCTTSSCTT--HHHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCcCCCCCCccCch--HHHHHHHHHH-HHHHHHHHHHH
Confidence 34555555666554444443332 1356555444 4544433333 33344445443
No 9
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=4.03 E-value=6.7e+02 Score=16.57 Aligned_cols=17 Identities=35% Similarity=0.602 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 012468 36 ASLDIFRGLAVALMILV 52 (463)
Q Consensus 36 ~slD~lRGlai~~Milv 52 (463)
.++.+.-|++++.|++-
T Consensus 8 malt~i~gl~vif~~lg 24 (40)
T 2l9u_A 8 MALTVIAGLVVIFMMLG 24 (40)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 46778889999888874
No 10
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=3.37 E-value=5.6e+02 Score=20.00 Aligned_cols=23 Identities=30% Similarity=0.592 Sum_probs=11.2
Q ss_pred HHHHHHH-HHHHHHHHhhcCCCccc
Q 012468 326 VTMGFAL-LIFGLTLHFTNAIPLNK 349 (463)
Q Consensus 326 l~~G~~l-l~~G~ll~~~~~~PInK 349 (463)
.+.|.++ .++|++.... .+|||.
T Consensus 54 t~iG~~imG~IGfiIkLI-~iPInn 77 (80)
T 2ww9_B 54 VGIGFIAVGIIGYAIKLI-HIPIRY 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHhHh
Confidence 3344433 3455555433 367764
Done!