Query 012468
Match_columns 463
No_of_seqs 224 out of 978
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 10:01:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012468.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012468hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jb0j_ f.23.18.1 (J:) Subunit 12.2 67 0.0049 20.4 2.4 20 293-312 8-27 (41)
2 d1v54c_ f.25.1.1 (C:) Mitochon 3.9 9.9E+02 0.072 19.8 11.1 25 62-90 9-33 (259)
3 d1q90m_ f.23.25.1 (M:) PetM su 3.5 4.6E+02 0.033 15.2 2.9 18 296-313 10-27 (34)
4 d2iuba2 f.17.3.1 (A:286-349) M 2.9 6.9E+02 0.05 16.1 5.0 13 39-51 4-16 (64)
5 d1jbka_ c.37.1.20 (A:) ClpB, A 2.6 1E+02 0.0073 25.9 -1.4 15 9-23 42-56 (195)
6 d1qvra2 c.37.1.20 (A:149-535) 2.1 1.1E+02 0.0077 28.5 -2.1 16 8-23 41-56 (387)
7 d1fftc_ f.25.1.1 (C:) Cytochro 2.0 1.1E+03 0.079 18.1 4.9 16 345-360 110-125 (185)
8 d1riqa1 a.203.1.1 (A:237-457) 1.9 5.9E+02 0.043 21.1 2.9 17 95-111 52-68 (221)
9 d1pv7a_ f.38.1.2 (A:) Lactose 1.6 1.2E+03 0.087 18.4 4.6 24 290-313 45-68 (417)
10 d1ojua2 d.162.1.1 (A:164-331) 1.6 4.3E+02 0.032 20.6 1.3 12 12-23 23-34 (152)
No 1
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=12.15 E-value=67 Score=20.40 Aligned_cols=20 Identities=20% Similarity=0.328 Sum_probs=16.5
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 012468 293 LSSVSSILSTIIGVHFGHVI 312 (463)
Q Consensus 293 Lstipai~~~llG~~aG~~l 312 (463)
|||-|.+++..++..||-++
T Consensus 8 lstAPVla~~w~~~tAG~lI 27 (41)
T d1jb0j_ 8 LSTAPVLAAIWMTITAGILI 27 (41)
T ss_dssp TTBHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHH
Confidence 68889999998888888644
No 2
>d1v54c_ f.25.1.1 (C:) Mitochondrial cytochrome c oxidase, subunit III {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.86 E-value=9.9e+02 Score=19.80 Aligned_cols=25 Identities=16% Similarity=0.454 Sum_probs=13.6
Q ss_pred cccCcccchhhhHHHHHHHHHHHHHHHHH
Q 012468 62 ISHAPWNGCNLADFVMPFFLFIVGVAIAL 90 (463)
Q Consensus 62 l~ha~w~G~t~~DlvfP~Flfl~G~s~~l 90 (463)
.+.++| |.-.-+..|.+..|+...+
T Consensus 9 v~~SpW----P~~~s~~~~~~~~g~~~~~ 33 (259)
T d1v54c_ 9 VNPSPW----PLTGALSALLMTSGLTMWF 33 (259)
T ss_dssp CCCCSH----HHHHHHHHHHHHHHHHHHH
T ss_pred CCCChh----HHHHHHHHHHHHHHHHHHH
Confidence 356778 3333344566666665544
No 3
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.52 E-value=4.6e+02 Score=15.25 Aligned_cols=18 Identities=22% Similarity=0.588 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 012468 296 VSSILSTIIGVHFGHVII 313 (463)
Q Consensus 296 ipai~~~llG~~aG~~l~ 313 (463)
+..+++.++|+..|-.+.
T Consensus 10 ~tmig~tl~glaigfvll 27 (34)
T d1q90m_ 10 LTMVGMTLVGLAIGFVLL 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhe
Confidence 345667777777775443
No 4
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=2.85 E-value=6.9e+02 Score=16.06 Aligned_cols=13 Identities=15% Similarity=0.460 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHH
Q 012468 39 DIFRGLAVALMIL 51 (463)
Q Consensus 39 D~lRGlai~~Mil 51 (463)
|++|-+|++.+++
T Consensus 4 ~~mk~lT~it~if 16 (64)
T d2iuba2 4 EVMKVLTIIATIF 16 (64)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5678888887776
No 5
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}
Probab=2.57 E-value=1e+02 Score=25.94 Aligned_cols=15 Identities=40% Similarity=0.838 Sum_probs=12.4
Q ss_pred ccCCCccccCCCcch
Q 012468 9 THHHPLIISEPDVSD 23 (463)
Q Consensus 9 ~~~~~~~~~~~~~~~ 23 (463)
+...++.+||||+|.
T Consensus 42 ~k~n~lLvG~pGVGK 56 (195)
T d1jbka_ 42 TKNNPVLIGEPGVGK 56 (195)
T ss_dssp SSCEEEEECCTTSCH
T ss_pred CCCCeEEEecCCccc
Confidence 456789999999987
No 6
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=2.09 E-value=1.1e+02 Score=28.46 Aligned_cols=16 Identities=38% Similarity=0.781 Sum_probs=13.4
Q ss_pred cccCCCccccCCCcch
Q 012468 8 TTHHHPLIISEPDVSD 23 (463)
Q Consensus 8 ~~~~~~~~~~~~~~~~ 23 (463)
.+.+.|+.+||||+|.
T Consensus 41 ~~k~n~llvG~~GvGK 56 (387)
T d1qvra2 41 RTKNNPVLIGEPGVGK 56 (387)
T ss_dssp SSCCCCEEEECTTSCH
T ss_pred CCCCCCeEECCCCCCH
Confidence 4556789999999997
No 7
>d1fftc_ f.25.1.1 (C:) Cytochrome O ubiquinol oxidase, subunit III {Escherichia coli [TaxId: 562]}
Probab=2.02 E-value=1.1e+03 Score=18.12 Aligned_cols=16 Identities=0% Similarity=0.202 Sum_probs=10.1
Q ss_pred CCccccCCchHHHHHH
Q 012468 345 IPLNKQLYTLSYVCVT 360 (463)
Q Consensus 345 ~PInK~lwT~Sfvl~t 360 (463)
+..+-+...+.|-++|
T Consensus 110 ~~~~~~~~~s~fy~lT 125 (185)
T d1fftc_ 110 MGPDRSGFLSAFFALV 125 (185)
T ss_dssp CSCCCCSTTTHHHHHH
T ss_pred cccccccchhhHHHHH
Confidence 4447777777766554
No 8
>d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]}
Probab=1.91 E-value=5.9e+02 Score=21.13 Aligned_cols=17 Identities=12% Similarity=0.419 Sum_probs=13.0
Q ss_pred CCchhHHHHHHHHHHHH
Q 012468 95 IPDRADAVKKVIFRTLK 111 (463)
Q Consensus 95 ~~~~~~~~~~i~~R~~~ 111 (463)
...+|-..|+++||++.
T Consensus 52 N~grGYvlRriiRRa~r 68 (221)
T d1riqa1 52 NEGRGYVIRRILRRAMR 68 (221)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHHH
Confidence 34566778999999984
No 9
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=1.60 E-value=1.2e+03 Score=18.36 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=17.6
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHh
Q 012468 290 EGLLSSVSSILSTIIGVHFGHVII 313 (463)
Q Consensus 290 eGlLstipai~~~llG~~aG~~l~ 313 (463)
-|++.++..++..+.....|.+-.
T Consensus 45 ~g~i~s~~~l~~~i~~~~~G~l~D 68 (417)
T d1pv7a_ 45 TGIIFAAISLFSLLFQPLFGLLSD 68 (417)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777777788888888887654
No 10
>d1ojua2 d.162.1.1 (A:164-331) Lactate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=1.60 E-value=4.3e+02 Score=20.59 Aligned_cols=12 Identities=33% Similarity=0.210 Sum_probs=9.2
Q ss_pred CCccccCCCcch
Q 012468 12 HPLIISEPDVSD 23 (463)
Q Consensus 12 ~~~~~~~~~~~~ 23 (463)
+-.++|||||+-
T Consensus 23 ~a~ViGeHGds~ 34 (152)
T d1ojua2 23 RAWIIGEHGDSM 34 (152)
T ss_dssp CCCEEBCSSTTC
T ss_pred eeEEEecCCCcc
Confidence 466899998863
Done!