Query 012470
Match_columns 463
No_of_seqs 163 out of 512
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 02:58:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012470.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012470hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02841 GPI mannosyltransfera 100.0 3.7E-97 8E-102 765.6 42.2 418 34-451 9-427 (440)
2 KOG3893 Mannosyltransferase [C 100.0 4.7E-88 1E-92 659.8 27.0 383 33-442 21-405 (405)
3 PF06728 PIG-U: GPI transamida 100.0 6.7E-67 1.5E-71 541.6 31.9 353 39-427 2-382 (382)
4 PF05007 Mannosyl_trans: Manno 100.0 3.6E-63 7.9E-68 483.5 28.8 257 155-439 1-259 (259)
5 KOG2552 Major facilitator supe 100.0 5.7E-52 1.2E-56 413.4 26.8 345 30-458 14-385 (388)
6 TIGR03459 crt_membr carotene b 99.2 7.5E-09 1.6E-13 109.2 28.8 137 69-209 103-266 (470)
7 COG5650 Predicted integral mem 99.1 9E-10 1.9E-14 116.4 13.8 193 140-381 198-401 (536)
8 PF09594 DUF2029: Protein of u 98.9 5.6E-07 1.2E-11 86.5 23.6 117 89-206 1-121 (241)
9 PRK13375 pimE mannosyltransfer 98.8 4.9E-06 1.1E-10 87.4 29.8 279 35-376 22-326 (409)
10 COG1807 ArnT 4-amino-4-deoxy-L 97.9 0.045 9.8E-07 59.6 32.9 134 69-203 37-186 (535)
11 PF05208 ALG3: ALG3 protein; 97.9 0.0056 1.2E-07 63.5 23.5 148 59-211 19-179 (368)
12 TIGR03663 conserved hypothetic 97.7 0.042 9.2E-07 58.8 27.8 149 35-197 6-165 (439)
13 PF09852 DUF2079: Predicted me 97.7 0.0023 5E-08 68.4 18.1 147 63-210 8-165 (449)
14 COG5542 Predicted integral mem 97.6 0.00063 1.4E-08 70.9 12.2 105 108-212 117-222 (420)
15 KOG2762 Mannosyltransferase [C 97.6 0.011 2.5E-07 60.6 20.2 149 58-211 46-207 (429)
16 PRK13279 arnT 4-amino-4-deoxy- 97.4 0.046 1E-06 60.1 23.7 139 66-205 32-189 (552)
17 PF02366 PMT: Dolichyl-phospha 97.3 0.0042 9E-08 60.7 13.7 158 36-201 3-187 (245)
18 PF04188 Mannosyl_trans2: Mann 97.2 0.45 9.8E-06 51.0 27.9 94 116-210 121-214 (443)
19 PF13231 PMT_2: Dolichyl-phosp 96.9 0.015 3.3E-07 51.8 11.7 119 91-210 2-130 (159)
20 KOG2575 Glucosyltransferase - 96.3 0.14 2.9E-06 53.8 15.1 167 35-211 35-243 (510)
21 COG4346 Predicted membrane-bou 95.7 0.15 3.2E-06 52.5 12.1 128 141-308 188-321 (438)
22 PF03155 Alg6_Alg8: ALG6, ALG8 95.5 0.95 2.1E-05 48.9 18.4 104 109-212 100-209 (469)
23 TIGR03766 conserved hypothetic 93.6 1.9 4E-05 46.8 15.1 162 34-209 69-250 (483)
24 COG3463 Predicted membrane pro 93.4 1.8 3.9E-05 46.0 13.8 150 60-211 32-192 (458)
25 PF10131 PTPS_related: 6-pyruv 92.2 23 0.0005 39.8 27.6 110 91-201 4-125 (616)
26 PF03901 Glyco_transf_22: Alg9 90.8 24 0.00052 37.2 23.6 100 110-210 84-195 (418)
27 KOG2647 Predicted Dolichyl-pho 85.4 1.7 3.6E-05 46.1 5.9 88 115-203 133-220 (444)
28 PF09913 DUF2142: Predicted me 84.1 47 0.001 34.5 16.2 87 109-202 123-219 (389)
29 PF05297 Herpes_LMP1: Herpesvi 81.2 0.48 1E-05 47.6 0.0 20 420-439 139-158 (381)
30 PF11847 DUF3367: Domain of un 65.0 57 0.0012 37.0 11.0 101 111-211 77-189 (680)
31 KOG2576 Glucosyltransferase - 64.8 39 0.00085 36.0 9.1 99 114-212 105-207 (500)
32 PF14264 Glucos_trans_II: Gluc 44.7 3.4E+02 0.0073 27.2 13.5 101 107-209 49-156 (319)
33 PF11028 DUF2723: Protein of u 44.6 1.3E+02 0.0027 28.5 8.3 70 141-210 87-167 (178)
34 PF14897 EpsG: EpsG family 42.0 3.5E+02 0.0076 26.6 12.8 83 112-196 67-151 (330)
35 COG1287 Uncharacterized membra 27.6 1E+03 0.022 27.6 18.1 100 63-163 49-168 (773)
36 COG1928 PMT1 Dolichyl-phosphat 24.1 1.3E+02 0.0029 34.3 5.5 90 111-200 113-214 (699)
37 COG4745 Predicted membrane-bou 23.0 1E+03 0.023 26.2 18.3 131 74-212 50-198 (556)
38 KOG3359 Dolichyl-phosphate-man 21.7 1.3E+03 0.028 26.8 15.6 50 160-209 172-235 (723)
No 1
>PLN02841 GPI mannosyltransferase
Probab=100.00 E-value=3.7e-97 Score=765.58 Aligned_cols=418 Identities=74% Similarity=1.375 Sum_probs=365.2
Q ss_pred HHHHHHHHHHHHHHHHhCcccccceeeeecCCcchhHhhHHHHHhCCCCCCCCCCcccChhHHHHHhhhhhhhhhhHHHH
Q 012470 34 RSLLWLSAIFRVILIVYGEWQDSHMEVRYTDVDYLVFSDAASLMASGDSPYKRTTYRYSPLLAFFLIPNSIIHRSWGKFL 113 (463)
Q Consensus 34 ~~~~~~a~~lRl~L~~~~~~~d~~~ev~yTdid~~~~~dga~l~~~G~sPY~~~~~~y~PLl~~ll~p~~~~~p~~~kll 113 (463)
..++++|+++|++++.+|++||+|+||||||+||+|++||++++.+|.|||+|+|||||||+++++.||...+|.+||++
T Consensus 9 ~~vll~a~~lRl~L~~yg~~~D~~~eVsytdidY~vftDga~lv~~G~SPY~r~TYrytPLLa~LllPn~~~~~~fgk~L 88 (440)
T PLN02841 9 RSLLLASALLRVALIVYGEWQDAHMEVRYTDVDYLVFSDAAALVASGKSPFARDTYRYSPLLALLLVPNSLLHRSWGKFL 88 (440)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCccccccccchHHHHHHHHHHHcCCCCCCCCCCCcChHHHHHHcchhhhhhhHHHHH
Confidence 47888999999999999999999999999999999999999999999999999999999999999999988789999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCccchhhhHHhhhhcchhhhhhcCCCcchHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Q 012470 114 FSASDLLVGVFIHSILKLRKVPEDLCMYSAVVWLFNPFTFTIGTRGNCEPIVCAMILWIIICLLKGNVLQAAFWYGLVVH 193 (463)
Q Consensus 114 f~~~Dll~a~ll~~i~~~~~~~~~~~~~~~~lylfNPl~I~~s~~gs~~~~~~~~vl~~l~~~~~~~~~la~i~lalav~ 193 (463)
|+++|+++|+++.+++++++.+++.+...+++|++||++|.+|+|||+|++.+++++.++|++.+||...||+++|+++|
T Consensus 89 F~l~Dll~a~ll~~il~~~~~~~~~~~~~a~~wL~NPlti~istrGSse~i~~~lvl~~L~~l~~g~~~~Aa~~lglavh 168 (440)
T PLN02841 89 FSAADLLVGLFIHTILRLRGVPEKVCTWSVMVWLFNPFTFTIGTRGNCEPIVCAVILWILICLMNGRLLQAAFWYGLVVH 168 (440)
T ss_pred HHHHHHHHHHHHHHHHHHhCccccccHHHHHHHHhCcHHHHHhcccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999998766555556677889999999999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHHHHHHHHhccccccCCCCcccccccccc-cccccccccccchhhHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 012470 194 FRIYPIIYVLPIILILDPLFFRSGLKPRLQNWSSRQ-DKTLRSSNKVTDQYDLWKALKTVFSKERVMFGLVSGAVFLSCT 272 (463)
Q Consensus 194 ~klYPiill~plll~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 272 (463)
+|+||++|++|++++++.++.++++++....+..++ +.+.+...+.+.+.+.+..+.++++++++.+++++++++++++
T Consensus 169 fkiYPiIy~~Pi~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~l~s~~tf~~l~ 248 (440)
T PLN02841 169 FRIYPIIYALPIILVLDKQYFGPGGRPALTKWNSKQNKTPSSNTEATSFLFNLWTFLTSLFSRERIMFGLISGGVFFALT 248 (440)
T ss_pred hhhhHHHHHHHHHHHhccccccccccccchhhhccccccccccccccchhhhhhHHHHhccCHhhhhhHHHHHHHHHHHH
Confidence 999999999999999965433322211111122221 1111111122212234444567789999999999999999999
Q ss_pred HHHHHHhchHHHHHhhhheeeecCCCCCCchhHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHH
Q 012470 273 GLFFYLYGWEFLHEALLYHLTRTDPRHNFSIYFYHIYLHYEHEFLMVEKLISFLPQFIVQLVLIFRFAQDLPFCLFMQTV 352 (463)
Q Consensus 273 ~~~y~~~Gw~Fl~~tY~~~l~~~D~rpN~gl~wYffyl~~~f~~~~f~~~~~fv~q~~~~~~l~~~~~~dl~~~~fl~t~ 352 (463)
+.+|.+|||||++|||+||++|+|||||||+|||..||++..+.+...+..+|+||+.+++.+++++.+|+++|+|+||+
T Consensus 249 ~~~y~~YG~~FL~eaylYHl~R~DhRHNFS~yfy~lYL~~~~~~~~~~~~~aFlPQl~l~~~~~~~~~~dl~~~~f~qT~ 328 (440)
T PLN02841 249 GVSFYLYGWEFLNEALLYHLTRTDPRHNFSIYFYHIYLHHEQGFSLVERLASFLPQFLVQLALILCFSQDLPFCLFLQTV 328 (440)
T ss_pred HHHHHHHhHHHHHHHHHHhheecCCCccCcHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHH
Confidence 99999999999999999999999999999999999999865444445688999999999888888888899999999999
Q ss_pred HHHHcccccchhhHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHH
Q 012470 353 AFVAFNKVVTAQYFVWFFCLLPLILPWSNMKLKWEGLSCILVWIGAQLHWLMWGYLLEFKGKNVFLQLWLAGLLFLAANT 432 (463)
Q Consensus 353 ~fv~fnkv~T~qyf~wyl~LLpL~~~~~~~~~~~~~~~~l~~w~l~~~~wl~w~y~lEf~G~~n~n~~~~~sLvf~~~~~ 432 (463)
+||+||||||+|||+||++|+|+++|..++.+++.++.++++|+++|++|+.|+|.|||+|.++|...|.++++|+++|+
T Consensus 329 ~FVtfNKVcTsQYF~Wyl~lLPl~l~~~~~~~~~~~~~~l~lW~~~Q~~WL~~aY~LEF~G~n~F~~lw~asl~Ff~~n~ 408 (440)
T PLN02841 329 AFVAFNKVITAQYFVWFFCLLPLILPWSRMKLKWKGLLCILVWMGSQLHWLMWAYLLEFKGRNVFLQLWIASLLFLAANT 408 (440)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhHhccccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888766456788899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCcccccc
Q 012470 433 FVLIMITCRHTYSPVFQRL 451 (463)
Q Consensus 433 ~ll~~~i~~~~~~~~~~~~ 451 (463)
+++.++|++++..+..++.
T Consensus 409 ~il~~~i~~~~~~~~~~~~ 427 (440)
T PLN02841 409 FVLLMIIQHHRFSPLFQRL 427 (440)
T ss_pred HHHHHHHHhcCcchhhhhh
Confidence 9999999998765555443
No 2
>KOG3893 consensus Mannosyltransferase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.7e-88 Score=659.77 Aligned_cols=383 Identities=43% Similarity=0.790 Sum_probs=348.4
Q ss_pred HHHHHHHHHHHHHHHHHhCcccccceeeeecCCcchhHhhHHHHHhCCCCCCCCCCcccChhHHHHHhhhhhhhhhhHHH
Q 012470 33 IRSLLWLSAIFRVILIVYGEWQDSHMEVRYTDVDYLVFSDAASLMASGDSPYKRTTYRYSPLLAFFLIPNSIIHRSWGKF 112 (463)
Q Consensus 33 ~~~~~~~a~~lRl~L~~~~~~~d~~~ev~yTdid~~~~~dga~l~~~G~sPY~~~~~~y~PLl~~ll~p~~~~~p~~~kl 112 (463)
....+++|++.|++|++||.+||++..|+||||||+|++||++.+.+|.|||+|+||||||++++++.||...+|.+||+
T Consensus 21 ~~~~llva~l~Ri~Lv~Yg~~hD~~~~v~~TDIDY~VftDaar~Vs~G~sPf~R~TYRYtP~la~ll~pni~~~p~~GK~ 100 (405)
T KOG3893|consen 21 FFTHLLVAFLARIALVFYGQLHDRQSAVPYTDIDYKVFTDAARQVSAGDSPFARATYRYTPILAWLLTPNIYLFPAWGKL 100 (405)
T ss_pred hHHHHHHHHHHHHHHHHHhhhcchhccCCccccceeEeehhhHHhhcCCChhhhhhhcccHHHHHHhccceecCchHHHH
Confidence 44567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCccchhhhHHhhhhcchhhhhhcCCCcchHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Q 012470 113 LFSASDLLVGVFIHSILKLRKVPEDLCMYSAVVWLFNPFTFTIGTRGNCEPIVCAMILWIIICLLKGNVLQAAFWYGLVV 192 (463)
Q Consensus 113 lf~~~Dll~a~ll~~i~~~~~~~~~~~~~~~~lylfNPl~I~~s~~gs~~~~~~~~vl~~l~~~~~~~~~la~i~lalav 192 (463)
+|+.+|+++|++++|++..++.+++++...+..|++||+++++|+|||+|++..++++..+|.+.|++...||+..|+++
T Consensus 101 Lf~~~Dll~a~L~~kLl~~~~i~~~~a~~~~~fWLlNPl~aiIStRGNaesi~~~lvi~~lyllqK~~v~~A~l~~GlaI 180 (405)
T KOG3893|consen 101 LFAIFDLLIATLIYKLLHMRSISRKQALIYASFWLLNPLTAIISTRGNAESIVAFLVILTLYLLQKSEVFLAGLAHGLAI 180 (405)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcchhhhhHhhhhhhcCchheeeecCCchHHHHHHHHHHHHHHHHHhHHHHHHHHhhhee
Confidence 99999999999999999877888888888999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHHHHHHHhccccccCCCCcccccccccccccccccccccchhhHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 012470 193 HFRIYPIIYVLPIILILDPLFFRSGLKPRLQNWSSRQDKTLRSSNKVTDQYDLWKALKTVFSKERVMFGLVSGAVFLSCT 272 (463)
Q Consensus 193 ~~klYPiill~plll~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 272 (463)
|+|+||+++.+|+.+.+..++++. +. ..+..+.++. .+++...+.+..++++.+
T Consensus 181 h~KIYPliY~l~i~l~ls~~~~~s----------------------~~-~~~l~sLL~~---~k~l~~~~~tLtsf~~~~ 234 (405)
T KOG3893|consen 181 HLKIYPLIYSLAIYLSLSTRKTQS----------------------TP-LDKLCSLLSI---NKQLCLILGTLTSFAACT 234 (405)
T ss_pred eeEechHHhhhhhheEEecCCCCC----------------------cH-HHHHHHHhcc---ccchhhhHHHHHHHHHHH
Confidence 999999999999999887654332 11 1122222221 123667788888999999
Q ss_pred HHHHHHhchHHHHHhhhheeeecCCCCCCchhHHHHHHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhh-cCChhHHHHHH
Q 012470 273 GLFFYLYGWEFLHEALLYHLTRTDPRHNFSIYFYHIYLHYEHE-FLMVEKLISFLPQFIVQLVLIFRF-AQDLPFCLFMQ 350 (463)
Q Consensus 273 ~~~y~~~Gw~Fl~~tY~~~l~~~D~rpN~gl~wYffyl~~~f~-~~~f~~~~~fv~q~~~~~~l~~~~-~~dl~~~~fl~ 350 (463)
+.+|.+|||||++|+|+||+.|+|+|||||+|+|..|+.+..+ .+...+.+.|+||+.++.+++..+ ++|+++|+|+|
T Consensus 235 ~~fY~iYG~eFLd~~ylYH~~R~D~rHNFS~~f~llYl~sas~~~s~~l~~~AflPQllLi~~~~~~~~~~~Lpfc~F~~ 314 (405)
T KOG3893|consen 235 WTFYYIYGWEFLDEAYLYHFVRRDHRHNFSLYFLLLYLGSASAEGSAILGLLAFLPQLLLILYLSLSFGQQDLPFCLFAQ 314 (405)
T ss_pred HHHHHHHhHHHHHHHHHhheecccccccCCHHHHHHHHHccCccHHHHHhHHHHHHHHHHHHHHHHHhcccCCCceeeee
Confidence 9999999999999999999999999999999999999987753 345788999999999999999986 66999999999
Q ss_pred HHHHHHcccccchhhHHHHHHhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHH
Q 012470 351 TVAFVAFNKVVTAQYFVWFFCLLPLILPWSNMKLKWEGLSCILVWIGAQLHWLMWGYLLEFKGKNVFLQLWLAGLLFLAA 430 (463)
Q Consensus 351 t~~fv~fnkv~T~qyf~wyl~LLpL~~~~~~~~~~~~~~~~l~~w~l~~~~wl~w~y~lEf~G~~n~n~~~~~sLvf~~~ 430 (463)
|++||++|||||+|||+||++++|++.|++++.+ +.++.++.+|+++|++|+..+|.+||+|+|+|.+.|.++++|++.
T Consensus 315 TfafVTyNKVcTSQYFvWYLv~LPl~l~~~~l~w-kr~l~ll~lW~~~Q~lWL~~aY~lEf~gkNtF~~i~Lag~lFf~~ 393 (405)
T KOG3893|consen 315 TFAFVTYNKVCTSQYFVWYLVLLPLVLPNFMLSW-KRALGLLFLWFITQALWLLPAYLLEFQGKNTFYPIFLAGLLFFAT 393 (405)
T ss_pred eeeEEEechhhhHHHHHHHHHHHHHhhhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 9999999999999999999999999999996554 447888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhc
Q 012470 431 NTFVLIMITCRH 442 (463)
Q Consensus 431 ~~~ll~~~i~~~ 442 (463)
|++++.++|+|+
T Consensus 394 N~~iL~qiishy 405 (405)
T KOG3893|consen 394 NVYILKQIISHY 405 (405)
T ss_pred HHHHHHHHHhcC
Confidence 999999999875
No 3
>PF06728 PIG-U: GPI transamidase subunit PIG-U; InterPro: IPR009600 Many eukaryotic proteins are anchored to the cell surface via glycosylphosphatidylinositol (GPI), which is posttranslationally attached to the C terminus by GPI transamidase. The mammalian GPI transamidase is a complex of at least four subunits, GPI8, GAA1, PIG-S, and PIG-T. PIG-U is thought to represent a fifth subunit in this complex and may be involved in the recognition of either the GPI attachment signal or the lipid portion of GPI [].; GO: 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=100.00 E-value=6.7e-67 Score=541.61 Aligned_cols=353 Identities=20% Similarity=0.289 Sum_probs=306.5
Q ss_pred HHHHHHHHHH-HhCccc---ccceeeeecCC-cchhHhhHHHHHhCCCCCCCCCCcccChhHHHHHhhh------hhhhh
Q 012470 39 LSAIFRVILI-VYGEWQ---DSHMEVRYTDV-DYLVFSDAASLMASGDSPYKRTTYRYSPLLAFFLIPN------SIIHR 107 (463)
Q Consensus 39 ~a~~lRl~L~-~~~~~~---d~~~ev~yTdi-d~~~~~dga~l~~~G~sPY~~~~~~y~PLl~~ll~p~------~~~~p 107 (463)
+|+++|+++. .+++++ ++|+|++ ||+ ||||++||.++.++|.|||+||++|||||+++++.+. ....+
T Consensus 2 ~~~~~Rl~L~~~~~~l~~~l~~rvE~s-TP~tSfkrl~Eg~~L~~~g~spY~g~v~h~~PLlL~l~~~l~~~~~~~~~~~ 80 (382)
T PF06728_consen 2 AGVLLRLLLFSLFPSLPDWLSDRVELS-TPLTSFKRLQEGVYLYKHGISPYSGGVFHQPPLLLALFSFLLKSSPNSPNSP 80 (382)
T ss_pred HHHHHHHHHHHHhcchhhhhhCCeEec-CccchHHHHHHHHHHHHcCCCCcCCCCccCcCHHHHHHHHHHhcccccccch
Confidence 6899999996 356555 5899999 999 9999999999999999999999999999999988655 23457
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCC-----------ccchhhhHHhhhhcchhhhhhcCCCcchHHHHHHHHHHHHH
Q 012470 108 SWGKFLFSASDLLVGVFIHSILKLRKVP-----------EDLCMYSAVVWLFNPFTFTIGTRGNCEPIVCAMILWIIICL 176 (463)
Q Consensus 108 ~~~kllf~~~Dll~a~ll~~i~~~~~~~-----------~~~~~~~~~lylfNPl~I~~s~~gs~~~~~~~~vl~~l~~~ 176 (463)
...+++|+++|+++|++++++.|.++.. +..+..++++|++||++|++|+++|++++.|++++.+++++
T Consensus 81 ~~~~llf~~~Dl~~A~~L~~i~~~~~~~~~~~~~~~~~~~~~~~lv~~~YLfNP~tIlscva~ST~~f~nl~i~~sl~~a 160 (382)
T PF06728_consen 81 ILISLLFILVDLLIAWLLYRIAKSYQKQESKRQKSPNEKSSSPWLVAAFYLFNPLTILSCVALSTTVFTNLFILLSLYFA 160 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCchhcccchHHHHHHHHHCHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 7899999999999999999998543211 13566789999999999999999999999999999999999
Q ss_pred HhCChHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccccCCCCcccccccccccccccccccccchhhHHHHHHhhhhhh
Q 012470 177 LKGNVLQAAFWYGLVVHFRIYPIIYVLPIILILDPLFFRSGLKPRLQNWSSRQDKTLRSSNKVTDQYDLWKALKTVFSKE 256 (463)
Q Consensus 177 ~~~~~~la~i~lalav~~klYPiill~plll~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 256 (463)
.||+...|++++|+++|+++||+++++|+++++.+..+..+.+ ++... . ..++
T Consensus 161 ~~g~~~~s~i~lAlatylSlYpi~Ll~Plll~l~~~~~~~~~~-----------------~~~~~-~---------~~~~ 213 (382)
T PF06728_consen 161 VKGNVFLSAISLALATYLSLYPILLLPPLLLLLYSSWKQSKSK-----------------NSSKS-S---------KWSS 213 (382)
T ss_pred HcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhhcccc-----------------ccccc-c---------HHHH
Confidence 9999999999999999999999999999998776521111000 00000 0 0112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc-hHHHHHhhhheeeecCCCCCCchhHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH
Q 012470 257 RVMFGLVSGAVFLSCTGLFFYLYG-WEFLHEALLYHLTRTDPRHNFSIYFYHIYLHYEHEFLMVEKLISFLPQFIVQLVL 335 (463)
Q Consensus 257 ~~~~~~~~~~~~~~l~~~~y~~~G-w~Fl~~tY~~~l~~~D~rpN~gl~wYffyl~~~f~~~~f~~~~~fv~q~~~~~~l 335 (463)
.++..+++..+++++..+||...| |+|+++||+.+++.+|++||.|+||||| +||||| ||++|.++||++.++++
T Consensus 214 ~~~~~~~f~~~~~~L~~~S~~~~~sw~fl~~ty~~~l~~~dltPNlGl~WYfF--~EmFd~--Fr~fF~~vF~~~~~~y~ 289 (382)
T PF06728_consen 214 FLQILLIFIASLAALLLLSYLITGSWNFLDSTYGFILTVPDLTPNLGLWWYFF--TEMFDH--FRPFFLFVFQLHPFIYI 289 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHhhcccCCCCCcchHHHHH--HHHHHH--HHHHHHHHHHHHHHHHH
Confidence 355677788888899999999888 9999999999999999999999999999 999999 99999999999999996
Q ss_pred HH---hhcCChhHHHHHHHHHHHHcccccchhhHHHHHHhhhhhhccchhhhhHHHHHH--HHHHHHHHHHHHHHHHHHh
Q 012470 336 IF---RFAQDLPFCLFMQTVAFVAFNKVVTAQYFVWFFCLLPLILPWSNMKLKWEGLSC--ILVWIGAQLHWLMWGYLLE 410 (463)
Q Consensus 336 ~~---~~~~dl~~~~fl~t~~fv~fnkv~T~qyf~wyl~LLpL~~~~~~~~~~~~~~~~--l~~w~l~~~~wl~w~y~lE 410 (463)
.| |++++|.++++++++++++||+|||.+|.+.+++++|++.+.++++|+++.+.+ +...+++|++|++|+|.
T Consensus 290 ~Pl~irl~~~p~~~~~~~~~~~~~fk~Ypt~~D~~~~lsll~~~~~~~~~~r~~~~~~~~~l~~~~L~p~~~~lWi~~-- 367 (382)
T PF06728_consen 290 IPLTIRLRKQPLFAFFILLGIISVFKPYPTVGDVGLYLSLLPLFSHLFPYMRYPFLVALTLLYALLLSPIFYHLWIYL-- 367 (382)
T ss_pred HHHhhhcccCcHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHhHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHhcc--
Confidence 66 589999999999999999999999999999999999999999999999985444 34589999999999999
Q ss_pred hcccchhHHHHHHHHHH
Q 012470 411 FKGKNVFLQLWLAGLLF 427 (463)
Q Consensus 411 f~G~~n~n~~~~~sLvf 427 (463)
|+||+||||+++++|
T Consensus 368 --gsgNaNFfya~tLv~ 382 (382)
T PF06728_consen 368 --GSGNANFFYAITLVY 382 (382)
T ss_pred --CCCCCcceeeeeeeC
Confidence 999999999999986
No 4
>PF05007 Mannosyl_trans: Mannosyltransferase (PIG-M); InterPro: IPR007704 PIG-M has a DXD motif. The DXD motif is found in many glycosyltransferases that utilise nucleotide sugars. It is thought that the motif is involved in the binding of a manganese ion that is required for association of the enzymes with nucleotide sugar substrates [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=100.00 E-value=3.6e-63 Score=483.52 Aligned_cols=257 Identities=50% Similarity=0.928 Sum_probs=235.1
Q ss_pred hhcCCCcchHHHHHHHHHHHHHHhCChHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccccCCCCccccccccccccccc
Q 012470 155 IGTRGNCEPIVCAMILWIIICLLKGNVLQAAFWYGLVVHFRIYPIIYVLPIILILDPLFFRSGLKPRLQNWSSRQDKTLR 234 (463)
Q Consensus 155 ~s~~gs~~~~~~~~vl~~l~~~~~~~~~la~i~lalav~~klYPiill~plll~l~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (463)
+|||||+|++.++++++++|++.|||...||+++|+|+|+|+||+||.+|+++++.+++++
T Consensus 1 ISTRGnaEsl~~~lVl~~l~~l~~~~~~~Aa~~lGlaVHfKIYPiIY~~~~~l~l~~~~~~------------------- 61 (259)
T PF05007_consen 1 ISTRGNAESLLCFLVLLTLYFLLKGRWFLAAILLGLAVHFKIYPIIYALPILLYLSNRKNG------------------- 61 (259)
T ss_pred CCCCcchHHHHHHHHHHHHHHHHcCChhHHHHHhhHHHHhhhccHHHHHHHHHHHhccccc-------------------
Confidence 5899999999999999999999999999999999999999999999999999999765322
Q ss_pred ccccccchhhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhhheeeecCCCCCCchhHHHHHHhhhh
Q 012470 235 SSNKVTDQYDLWKALKTVFSKERVMFGLVSGAVFLSCTGLFFYLYGWEFLHEALLYHLTRTDPRHNFSIYFYHIYLHYEH 314 (463)
Q Consensus 235 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~Gw~Fl~~tY~~~l~~~D~rpN~gl~wYffyl~~~f 314 (463)
+..+.+.++++++++++++++++++++++.++|.+|||||++|||+||++|+|||||||+|||..|+++..
T Consensus 62 ---------~~~~~~~~~~~~~~~~f~~~s~~tf~~l~~~~Y~~YG~~FL~eaylYHl~R~DhRHNFS~yfy~lYL~~~~ 132 (259)
T PF05007_consen 62 ---------SFRSRLKRLLNPNRLKFGLISAITFAALTLLMYYIYGWEFLYEAYLYHLTRKDHRHNFSPYFYLLYLSSSS 132 (259)
T ss_pred ---------hHHHHHHHhcCHhHhhhHHHHHHHHHHHHHHHHHHHChHHHHHHHhhheEeecCCccCcHHHHHHHHcCCC
Confidence 12223346677889999999999999999999999999999999999999999999999999999998776
Q ss_pred hh--hHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHcccccchhhHHHHHHhhhhhhccchhhhhHHHHHHH
Q 012470 315 EF--LMVEKLISFLPQFIVQLVLIFRFAQDLPFCLFMQTVAFVAFNKVVTAQYFVWFFCLLPLILPWSNMKLKWEGLSCI 392 (463)
Q Consensus 315 ~~--~~f~~~~~fv~q~~~~~~l~~~~~~dl~~~~fl~t~~fv~fnkv~T~qyf~wyl~LLpL~~~~~~~~~~~~~~~~l 392 (463)
++ +...+...|+||+.++..++.++++|+++|+|+||++||+||||||+|||.||++++|++.|+.+....+.++.++
T Consensus 133 ~~~~s~~~~~~aflPQl~l~~~~~~~~~~dL~~~~f~qT~~FVtFNKVcTsQYF~Wyl~lLPl~l~~~~l~s~~~~~~~l 212 (259)
T PF05007_consen 133 PTYSSSILGLLAFLPQLILILVISLKFYRDLPFCLFLQTFAFVTFNKVCTSQYFLWYLCLLPLVLPRSRLLSWRKGVFLL 212 (259)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHCccchHHHHHHHHHHHhchhhcchHHHHHHHHHHHHhchhccchHHHHHHHH
Confidence 63 3456889999999999999999999999999999999999999999999999999999999999874445577788
Q ss_pred HHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHH
Q 012470 393 LVWIGAQLHWLMWGYLLEFKGKNVFLQLWLAGLLFLAANTFVLIMIT 439 (463)
Q Consensus 393 ~~w~l~~~~wl~w~y~lEf~G~~n~n~~~~~sLvf~~~~~~ll~~~i 439 (463)
.+|+++|++|+.++|.|||+|.+++.+.|.++++|+++|++++.++|
T Consensus 213 ~~W~~~Q~~WL~~AY~LEF~G~n~F~~lw~asl~Ff~~N~~iL~~~I 259 (259)
T PF05007_consen 213 ALWVASQALWLLQAYLLEFLGKNTFLPLWLASLVFFIANVWILGQII 259 (259)
T ss_pred HHHHHHHHHHHHHHHHhhhcCcchHHHHHHHHHHHHHHHHHHHHHhC
Confidence 89999999999999999999999999999999999999999999875
No 5
>KOG2552 consensus Major facilitator superfamily permease - Cdc91p [General function prediction only]
Probab=100.00 E-value=5.7e-52 Score=413.43 Aligned_cols=345 Identities=20% Similarity=0.269 Sum_probs=285.0
Q ss_pred hhhHHHHHHHHHHHHHHHHH--hCcccccceeeeecCC-cchhHhhHHHHHhCCCCCCCCCCcccChhHHHHHhh-----
Q 012470 30 SINIRSLLWLSAIFRVILIV--YGEWQDSHMEVRYTDV-DYLVFSDAASLMASGDSPYKRTTYRYSPLLAFFLIP----- 101 (463)
Q Consensus 30 ~~~~~~~~~~a~~lRl~L~~--~~~~~d~~~ev~yTdi-d~~~~~dga~l~~~G~sPY~~~~~~y~PLl~~ll~p----- 101 (463)
+.+...+..++..+|.-+.. .++..++|+||+ ||+ +|+|++||..++++|.|||+|+.+|+|||++.++.+
T Consensus 14 ~~k~~~~l~i~~~v~~~lf~s~~a~~is~rvEvs-TPvsS~rRl~EGi~Ll~~gl~PY~G~vfH~sPLlL~ll~~~~~~l 92 (388)
T KOG2552|consen 14 ELKLALWLVISAAVRVRLFRSSLAEFISERVEVS-TPVSSFRRLQEGIALLDNGLSPYSGGVFHESPLLLSLLRGYYLEL 92 (388)
T ss_pred chhHHHHHHHHHHHHHHHHhhhhhHHhhcCceec-CcchHHHHHhhhHHHHhcCCCcccCccccCCcchhhhhchHHHHH
Confidence 34455667777777777766 477788999999 999 999999999999999999999999999999988841
Q ss_pred --hhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcC---CC-------c----cchhhhHHhhhhcchhhhhhcCCCcchHH
Q 012470 102 --NSIIHRSWGKFLFSASDLLVGVFIHSILKLRK---VP-------E----DLCMYSAVVWLFNPFTFTIGTRGNCEPIV 165 (463)
Q Consensus 102 --~~~~~p~~~kllf~~~Dll~a~ll~~i~~~~~---~~-------~----~~~~~~~~lylfNPl~I~~s~~gs~~~~~ 165 (463)
+..-.+..+.+.++..|+..+++..++.+.++ .+ + .-+.+++.+|++||+||++|.+.|++.+.
T Consensus 93 ~~~i~~a~t~~~lyf~i~dl~~~~l~kq~~k~~~~ya~d~~~l~~~p~~~~~i~~~v~l~Yl~NPlTilSCi~~St~~I~ 172 (388)
T KOG2552|consen 93 LFMITDARTAILLYFAIADLLKYLLLKQIQKEQKAYALDVRELQFLPMEILPIGDLVALLYLFNPLTILSCIGLSTTVIE 172 (388)
T ss_pred HhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHhhcCcccccHHHHHHHHHHhCceeeeeeccccchHHH
Confidence 11113567888999999999999988633221 11 1 12357899999999999999999999999
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccccCCCCcccccccccccccccccccccchhhH
Q 012470 166 CAMILWIIICLLKGNVLQAAFWYGLVVHFRIYPIIYVLPIILILDPLFFRSGLKPRLQNWSSRQDKTLRSSNKVTDQYDL 245 (463)
Q Consensus 166 ~~~vl~~l~~~~~~~~~la~i~lalav~~klYPiill~plll~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (463)
|++++.++|.+.+|+..++++++++++|.++||+.+..|+++++++....+
T Consensus 173 N~~v~~~ly~av~~~~~l~a~~la~~t~~s~yp~~L~~P~l~~L~~~~~~~----------------------------- 223 (388)
T KOG2552|consen 173 NFAVAVSLYGAVTGRVPLAAFGLAIATHLSLYPATLTIPLLFLLGYGLDAP----------------------------- 223 (388)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHhcccchHHHHHHHHHHHhccccCc-----------------------------
Confidence 999999999999999999999999999999999999999999997653221
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhc-hHHHHHhhhheeeecCCCCCCchhHHHHHHhhhhhhhHHHHHHH
Q 012470 246 WKALKTVFSKERVMFGLVSGAVFLSCTGLFFYLYG-WEFLHEALLYHLTRTDPRHNFSIYFYHIYLHYEHEFLMVEKLIS 324 (463)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~G-w~Fl~~tY~~~l~~~D~rpN~gl~wYffyl~~~f~~~~f~~~~~ 324 (463)
. + .++.+.......++.+.+ |+|+..|||++++.+|..||+|++|||| +||||| ++.++.
T Consensus 224 -----~------~----~~i~s~li~~~~~~~l~~~~~f~~~~ygfilsi~dl~Pniglfwyff--~e~F~~--f~~~fl 284 (388)
T KOG2552|consen 224 -----H------L----PFIFSVLIWSLYVLFLLSSWEFFKRTYGFILSIEDLSPNIGLFWYFF--AEMFEF--FRNFFL 284 (388)
T ss_pred -----c------c----chhHHHHHHHHHHHHHHHHHHHHhhhccceeeHHhhCCCccHHHHHH--HHHHHH--HhhHHH
Confidence 0 0 113333444455566666 9999999999999999999999999999 999999 899888
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHcccccchhhHHHHHHhhhhhhccchhhhhHHHHHH--HHHHHHHHHHH
Q 012470 325 FLPQFIVQLVLIFRFAQDLPFCLFMQTVAFVAFNKVVTAQYFVWFFCLLPLILPWSNMKLKWEGLSC--ILVWIGAQLHW 402 (463)
Q Consensus 325 fv~q~~~~~~l~~~~~~dl~~~~fl~t~~fv~fnkv~T~qyf~wyl~LLpL~~~~~~~~~~~~~~~~--l~~w~l~~~~w 402 (463)
.++ .++|.+|.+.|++++|++.+.++++|+.+.+.+ +...+++|++|
T Consensus 285 ivf-------------------------------~~~slgd~~lyls~~p~~~~~~~~~~~~f~~~~~~l~~~lL~pv~~ 333 (388)
T KOG2552|consen 285 IVF-------------------------------AYISLGDVALYLSLLPLFVNELKDMRYSFFIFCGYLGTSLLMPVMW 333 (388)
T ss_pred Hhh-------------------------------hhcchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 877 233999999999999999999999999985555 34589999999
Q ss_pred HHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCCCccc
Q 012470 403 LMWGYLLEFKGKNVFLQLWLAGLLFLAANTFVLIMITCRHTYSPVFQRLGHPTLKN 458 (463)
Q Consensus 403 l~w~y~lEf~G~~n~n~~~~~sLvf~~~~~~ll~~~i~~~~~~~~~~~~~~~~~~~ 458 (463)
|+|+|. |+||+||||+++++|.++|+.+++|.+..+...+...+..+...|+
T Consensus 334 hlWi~~----gsgNaNF~fg~tl~y~~~qi~lv~d~~~a~lr~e~~l~~~~~~~~~ 385 (388)
T KOG2552|consen 334 HLWIVR----GSGNANFYFGNTLVYACAQINLVVDSVFAMLRREYDLKYSNALLKK 385 (388)
T ss_pred hhheec----CCCccceehhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhc
Confidence 999999 9999999999999999999999999999887655554444433333
No 6
>TIGR03459 crt_membr carotene biosynthesis associated membrane protein. This model represents a family of hydrophobic and presumed membrane proteins. The genes encoding these proteins are syntenically associated with (found proximal to) genes of carotene biosynthesis ususally including phytoene synthase (crtB), phytoene dehydrogenase (crtI) and geranylgeranyl pyrophosphate synthase (ispA).
Probab=99.24 E-value=7.5e-09 Score=109.25 Aligned_cols=137 Identities=14% Similarity=0.084 Sum_probs=107.5
Q ss_pred hHhhHHHHHhCCCCCCCCCC-------------------cccChhHHHHHhhhhh-------hhhhhHHHHHHHHHHHHH
Q 012470 69 VFSDAASLMASGDSPYKRTT-------------------YRYSPLLAFFLIPNSI-------IHRSWGKFLFSASDLLVG 122 (463)
Q Consensus 69 ~~~dga~l~~~G~sPY~~~~-------------------~~y~PLl~~ll~p~~~-------~~p~~~kllf~~~Dll~a 122 (463)
+..|| +++.+|.|||+.++ --|.|+-..+...... ..-...|++-.+.+++++
T Consensus 103 YlaqG-~l~~~G~dPY~~gP~~~~~~~~~~v~~~W~~t~aPYGPl~l~i~~~v~~l~g~~i~~~v~~~Rl~~l~g~~l~~ 181 (470)
T TIGR03459 103 YLMQG-ALLRDGFDPYTVGAAANPGPLLDEVSPDWRNTTTPYGPLHLLVGQAITTVTGDNVTAGTLAFKLLSLPGLAVMV 181 (470)
T ss_pred HHHHH-HHHHcCCCccccCCccCCchHhhhcCchhccCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence 44899 88999999998543 2455665544321110 112356888889999999
Q ss_pred HHHHHHHhhcCCCccchhhhHHhhhhcchhhhhhcCC-CcchHHHHHHHHHHHHHHhCChHHHHHHHHHHHHhhhhhHHH
Q 012470 123 VFIHSILKLRKVPEDLCMYSAVVWLFNPFTFTIGTRG-NCEPIVCAMILWIIICLLKGNVLQAAFWYGLVVHFRIYPIIY 201 (463)
Q Consensus 123 ~ll~~i~~~~~~~~~~~~~~~~lylfNPl~I~~s~~g-s~~~~~~~~vl~~l~~~~~~~~~la~i~lalav~~klYPiil 201 (463)
|++.|++|+.|.+++ ....++.+||++|.+-++| |.|+++..+++.++++..|+|...+++++++++..|+-|++.
T Consensus 182 w~~~rLar~~g~~~~---~AlWL~~~NPLviihlvgg~HnealM~gl~l~gl~~~~r~~~~~g~vli~~a~~VK~~a~l~ 258 (470)
T TIGR03459 182 WAVPKLATHLGGNPT---VALWLGVLNPLVVIHLIGGMHNEMLMVGLVSAGILLALKRRPVAGIALIAVAVALKATAGIA 258 (470)
T ss_pred HHHHHHHHHcCCCHH---HHHHHHHcCchhhhhhhcchhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhHHHHHH
Confidence 999999999875542 2334479999999999988 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 012470 202 VLPIILIL 209 (463)
Q Consensus 202 l~plll~l 209 (463)
+|-+....
T Consensus 259 Lpf~~~~~ 266 (470)
T TIGR03459 259 LPFVVWIW 266 (470)
T ss_pred HHHHHHHH
Confidence 86655443
No 7
>COG5650 Predicted integral membrane protein [Function unknown]
Probab=99.10 E-value=9e-10 Score=116.44 Aligned_cols=193 Identities=16% Similarity=0.175 Sum_probs=141.1
Q ss_pred hhhHHhhhhcchhhhhhcCCCcchHHHHHHHHHHHHHHhCChHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccccCCCC
Q 012470 140 MYSAVVWLFNPFTFTIGTRGNCEPIVCAMILWIIICLLKGNVLQAAFWYGLVVHFRIYPIIYVLPIILILDPLFFRSGLK 219 (463)
Q Consensus 140 ~~~~~lylfNPl~I~~s~~gs~~~~~~~~vl~~l~~~~~~~~~la~i~lalav~~klYPiill~plll~l~~~~~~~~~~ 219 (463)
.+.+++-.-+|+ +.-+..++.|.+..+++++++.+ |+|+.+||+++|+++..|.+|.++++|++.++.+++..+
T Consensus 198 ~~~valv~as~~-v~f~v~~~~DtI~~ffla~a~v~--r~rP~lAGvl~Gls~a~K~~P~Ivl~pll~~~~keyg~~--- 271 (536)
T COG5650 198 VLDVALVAASPL-VGFAVFTVFDTIWAFFLAAALVC--RGRPKLAGVLIGLSSAFKQIPLIVLPPLLYLIYKEYGLR--- 271 (536)
T ss_pred eeeeeeeeccce-EEEEEecchhHHHHHHHHHHHHh--cCCchHHHHHHHHHHHhhcCchhhHHHHHHHHHHhcCcc---
Confidence 467788899994 44456779999999999999987 999999999999999999999999999999887753321
Q ss_pred cccccccccccccccccccccchhhHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhchHHHHHhhhheeeecCCCC
Q 012470 220 PRLQNWSSRQDKTLRSSNKVTDQYDLWKALKTVFSKERVMFGLVSGAVFLSCTGLFFYLYGWEFLHEALLYHLTRTDPRH 299 (463)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~y~~~Gw~Fl~~tY~~~l~~~D~rp 299 (463)
...++..+++++++++++.+-...+++|.++..+.+- |.|..
T Consensus 272 ------------------------------------~a~~f~~~aa~t~lLvN~PfiI~~P~aw~~sil~~~~-r~~~~- 313 (536)
T COG5650 272 ------------------------------------PAIKFIATAAITWLLVNLPFIILGPRAWVESILLFAR-RGLIG- 313 (536)
T ss_pred ------------------------------------hHHHHHHHHHHHHHHHcCceEEechHHHHHHHHhHHh-cCCcc-
Confidence 1356888999999999998877777999988777765 32322
Q ss_pred CCchh--------HHHH---HHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHcccccchhhHHH
Q 012470 300 NFSIY--------FYHI---YLHYEHEFLMVEKLISFLPQFIVQLVLIFRFAQDLPFCLFMQTVAFVAFNKVVTAQYFVW 368 (463)
Q Consensus 300 N~gl~--------wYff---yl~~~f~~~~f~~~~~fv~q~~~~~~l~~~~~~dl~~~~fl~t~~fv~fnkv~T~qyf~w 368 (463)
-|.+ ||-+ |..+..-..+...+..+.-.+....++.+. -+...+|.-...+..+|+++ .|...|
T Consensus 314 -~~~~~sI~s~aG~~~~~P~~F~~~~l~l~v~lf~lya~~~~alk~~~~~---~pv~~~f~~v~~~~~~l~~W-P~~sm~ 388 (536)
T COG5650 314 -VGIGISIPSFAGFYAVDPLLFIIPPLVLNVFLFVLYALYCNALKYIALI---FPVILLFLNVRVLLLYLIVW-PQLSMV 388 (536)
T ss_pred -cccceecccccccccccceEEehhHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 1211 1111 002221112234455555555555555443 35889999999999999999 999999
Q ss_pred HHHhhhhhhccch
Q 012470 369 FFCLLPLILPWSN 381 (463)
Q Consensus 369 yl~LLpL~~~~~~ 381 (463)
.+++..+..+..+
T Consensus 389 l~P~a~~~~~~~~ 401 (536)
T COG5650 389 LVPLAVLAEPAKK 401 (536)
T ss_pred HhHHHHHhhhcee
Confidence 9999888775443
No 8
>PF09594 DUF2029: Protein of unknown function (DUF2029); InterPro: IPR018584 This is a putative transmembrane protein from prokaryotes. It is likely to be conserved between Mycobacterium species []. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=98.91 E-value=5.6e-07 Score=86.50 Aligned_cols=117 Identities=19% Similarity=0.385 Sum_probs=86.1
Q ss_pred cccChhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH-hhcCCCcc--ch-hhhHHhhhhcchhhhhhcCCCcchH
Q 012470 89 YRYSPLLAFFLIPNSIIHRSWGKFLFSASDLLVGVFIHSIL-KLRKVPED--LC-MYSAVVWLFNPFTFTIGTRGNCEPI 164 (463)
Q Consensus 89 ~~y~PLl~~ll~p~~~~~p~~~kllf~~~Dll~a~ll~~i~-~~~~~~~~--~~-~~~~~lylfNPl~I~~s~~gs~~~~ 164 (463)
|.|||..+.++.|.....+.....++.+..+++.....+.. |+.+..++ .. .....+..++|. ...-..|+.|.+
T Consensus 1 ~~YpP~~~~l~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~gq~~~l 79 (241)
T PF09594_consen 1 YVYPPLFALLFAPLALLPFPVAFLLWALLSLAALALAVRLLLRRLGRRKPPGRALLLALLLLAFPPV-LSALGLGQFDLL 79 (241)
T ss_pred CcCcHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcchhHHHHHHHHHHHHHHH-HHHHHhccHHHH
Confidence 67999999999887665556677777666666555555444 33222111 11 112245667777 555566799999
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHhhhhhHHHHHHHH
Q 012470 165 VCAMILWIIICLLKGNVLQAAFWYGLVVHFRIYPIIYVLPII 206 (463)
Q Consensus 165 ~~~~vl~~l~~~~~~~~~la~i~lalav~~klYPiill~pll 206 (463)
..++++.+++...|+|+..||+++|+++..|++|+++++.++
T Consensus 80 ~~~l~~~a~~~~~r~r~~~agv~lgla~~~K~~p~~~l~~ll 121 (241)
T PF09594_consen 80 VAALLLLALLALRRGRPWLAGVLLGLAAAIKLYPALLLPALL 121 (241)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999998443
No 9
>PRK13375 pimE mannosyltransferase; Provisional
Probab=98.85 E-value=4.9e-06 Score=87.38 Aligned_cols=279 Identities=17% Similarity=0.168 Sum_probs=154.2
Q ss_pred HHHHHHHHHHHHHHHh-CcccccceeeeecCCcchhHhhHHHHHhCCCCCCCCC----------CcccChhHHHHHhhhh
Q 012470 35 SLLWLSAIFRVILIVY-GEWQDSHMEVRYTDVDYLVFSDAASLMASGDSPYKRT----------TYRYSPLLAFFLIPNS 103 (463)
Q Consensus 35 ~~~~~a~~lRl~L~~~-~~~~d~~~ev~yTdid~~~~~dga~l~~~G~sPY~~~----------~~~y~PLl~~ll~p~~ 103 (463)
.++.++++.|+.-... ++-+ ..+|.+++++|.+-+.+|.|-||.+ .|.|||.-+.++.|..
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~--------~~vDl~VYr~g~~~~~~g~~LYd~~~~~~~~~~~LpFtYPPfaallf~PLa 93 (409)
T PRK13375 22 LLLVLSVAARLAWTYLAPNGA--------NFVDLHVYVGGAAALDHPGTLYDYVYADQTPDFPLPFTYPPFAALVFYPLH 93 (409)
T ss_pred HHHHHHHHHHHHHhcccCCCC--------CCccHHHHHHhHHHHccCCcccCccccccCCCCCCCCCCCcHHHHHHHHHH
Confidence 3678888999964432 3211 3348889999999999999999843 4899999999999987
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHh-hcCCCcc-chh---hhHHhhhhcchhhhhhcCCCcchHHHHHHHHHHHHHHh
Q 012470 104 IIHRSWGKFLFSASDLLVGVFIHSILK-LRKVPED-LCM---YSAVVWLFNPFTFTIGTRGNCEPIVCAMILWIIICLLK 178 (463)
Q Consensus 104 ~~~p~~~kllf~~~Dll~a~ll~~i~~-~~~~~~~-~~~---~~~~lylfNPl~I~~s~~gs~~~~~~~~vl~~l~~~~~ 178 (463)
.........++.+.-++.-+...++.. ..+.... .+. +.+..-.+-|.--.... |+-..+..++++ ....+
T Consensus 94 lLp~~~a~~l~~~~~~~al~~~v~~~~r~l~~~~~~~~~a~~~~~~~l~~ePv~~tl~~-GQIN~lL~~Lv~---~dll~ 169 (409)
T PRK13375 94 LLPFGVVAFLWQLATIAALYGVVRISQRLLGGGAGGHRVAMLWTAVGIWLEPVRSTFDY-GQINVFLMLAVL---YAVYS 169 (409)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHhHHHHHHHHh-CcHHHHHHHHHH---HHHhc
Confidence 765556677777766665555444432 2221110 111 01111123444322212 222233333333 33457
Q ss_pred CChHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccccCCCCcccccccccccccccccccccchhhHHHHHHhhhhhhHH
Q 012470 179 GNVLQAAFWYGLVVHFRIYPIIYVLPIILILDPLFFRSGLKPRLQNWSSRQDKTLRSSNKVTDQYDLWKALKTVFSKERV 258 (463)
Q Consensus 179 ~~~~la~i~lalav~~klYPiill~plll~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 258 (463)
+|...+|+++|++..+|+.|.++. +++++.|+ .
T Consensus 170 ~r~~~aGvliGLAaaIKlTPavf~--l~lL~~Rr---------------------------------------------W 202 (409)
T PRK13375 170 SRWWLSGLLVGLAAGVKLTPAITG--LYFLGARR---------------------------------------------W 202 (409)
T ss_pred CCccHHHHHHHHHHHhhhhhHHHH--HHHHHhCH---------------------------------------------H
Confidence 788899999999999999999954 33444322 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhc---hHHHHHhhhhe--eeecCCCCCCchhHHHHHHhhhhhhhHHHHHHHHHHHHHHHH
Q 012470 259 MFGLVSGAVFLSCTGLFFYLYG---WEFLHEALLYH--LTRTDPRHNFSIYFYHIYLHYEHEFLMVEKLISFLPQFIVQL 333 (463)
Q Consensus 259 ~~~~~~~~~~~~l~~~~y~~~G---w~Fl~~tY~~~--l~~~D~rpN~gl~wYffyl~~~f~~~~f~~~~~fv~q~~~~~ 333 (463)
+..+.++.++++.+.+++...| |+|..++.... +...|...|=|+-=-..-+... |. -.. ......+.+..
T Consensus 203 ra~~~A~~t~~~~~~lg~~~~p~~s~~ywt~~l~~~~riG~~~~~~NqSl~G~l~Rl~g~-~~--~~~-~~~~~~~~v~a 278 (409)
T PRK13375 203 AAAAFSAVVFLATVGVSYLVVGDQARYYFTDLLGDADRVGPIGTSFNQSWRGAISRILGH-DA--GFG-PLVLAAIAVTA 278 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhccccccCCccccccchHHHHHHHHcCC-Cc--hHH-HHHHHHHHHHH
Confidence 3445677778888888888875 88888864442 1112334455443221211111 11 001 01111111111
Q ss_pred H---HHHhh--cCChhHHHHHHHHHHHHcccccchhhHHHHHHhhhhh
Q 012470 334 V---LIFRF--AQDLPFCLFMQTVAFVAFNKVVTAQYFVWFFCLLPLI 376 (463)
Q Consensus 334 ~---l~~~~--~~dl~~~~fl~t~~fv~fnkv~T~qyf~wyl~LLpL~ 376 (463)
. ...+. +.|..-++.+....-.+..+|-=+.+..|..+++...
T Consensus 279 ~~~~~awr~~~~~~~~~al~~~~l~~lLvSP~SW~HHwVWlvp~i~~l 326 (409)
T PRK13375 279 VLALLAWRALGRSDRLGSLLVVQLFGLLLSPISWTHHWVWVVPLMIWL 326 (409)
T ss_pred HHHHHHHHhccCcchhHHHHHHHHHhHHhCCcchhhhHHHHHHHHHHH
Confidence 1 11222 3344444433333355667776667779998877544
No 10
>COG1807 ArnT 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane]
Probab=97.89 E-value=0.045 Score=59.58 Aligned_cols=134 Identities=12% Similarity=0.139 Sum_probs=86.0
Q ss_pred hHhhHHHHHhCCCCCCC----C-CCcccChhHHHHHhhhhhh---hhhhHHHHHHHHHHHHHHHHHHHHhhcCCCccchh
Q 012470 69 VFSDAASLMASGDSPYK----R-TTYRYSPLLAFFLIPNSII---HRSWGKFLFSASDLLVGVFIHSILKLRKVPEDLCM 140 (463)
Q Consensus 69 ~~~dga~l~~~G~sPY~----~-~~~~y~PLl~~ll~p~~~~---~p~~~kllf~~~Dll~a~ll~~i~~~~~~~~~~~~ 140 (463)
+..|.++-+.+..|-.. | ..++.||+..++....... +.....+.-.++-.+++.+.+.+.|+.... +.+.
T Consensus 37 ~~~~~~~~m~~s~~w~~~~~~g~~~~~kPPl~~Wl~a~~~~lfG~~~~~~rl~~~l~~~~~~~l~y~l~k~l~~~-~~a~ 115 (535)
T COG1807 37 RYAEIAREMLESGDWFTPQLLGLPYFEKPPLVYWLQALSYLLFGVNEWSARLPSALAGALTALLVYWLAKRLFGR-LAAL 115 (535)
T ss_pred hHHHHHHHHHHcCCCcceeeCCccccCCCcHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcc-HHHH
Confidence 44445554444333222 2 3456688887765432211 122223333444446666666666654322 3455
Q ss_pred hhHHhhhhcchhhhhhcCCCcchHHHHHHHHHHHHHHhCC--------hHHHHHHHHHHHHhhhhhHHHHH
Q 012470 141 YSAVVWLFNPFTFTIGTRGNCEPIVCAMILWIIICLLKGN--------VLQAAFWYGLVVHFRIYPIIYVL 203 (463)
Q Consensus 141 ~~~~lylfNPl~I~~s~~gs~~~~~~~~vl~~l~~~~~~~--------~~la~i~lalav~~klYPiill~ 203 (463)
..+++++++|.++..+...+.|....+++.+++++..+.+ ..+.++.+|++...|---+++++
T Consensus 116 ~aali~~~~p~~~~~~~~~~~D~~l~~f~~la~~~~~~~~~~~~~~~~~l~~gl~lGL~~ltKg~~~~~l~ 186 (535)
T COG1807 116 LAALILLLTPLFFLIGRLALLDAALAFFLTLALALLYLALRARGKLKWLLLLGLALGLGFLTKGPGALLLP 186 (535)
T ss_pred HHHHHHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHhchHHHHHH
Confidence 6788899999999999999999999999988888875322 26789999999999976666665
No 11
>PF05208 ALG3: ALG3 protein; InterPro: IPR007873 The formation of N-glycosidic linkages of glycoproteins involves the ordered assembly of the common Glc3Man9GlcNAc2 core-oligosaccharide on the lipid carrier dolichyl pyrophosphate. Whereas early mannosylation steps occur on the cytoplasmic side of the endoplasmic reticulum with GDP-Man as donor, the final reactions from Man5GlcNAc2-PP-Dol to Man9GlcNAc2-PP-Dol on the lumenal side use Dol-P-Man []. The ALG3 gene encodes the Dol-P-Man:Man5GlcNAc2-PP-Dol mannosyltransferase.; GO: 0016758 transferase activity, transferring hexosyl groups, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=97.85 E-value=0.0056 Score=63.45 Aligned_cols=148 Identities=14% Similarity=0.285 Sum_probs=99.1
Q ss_pred eeeecCCcchhHhhHHHHHhCCCCCCC---CCC--cccChhHHHHHhhhhh-----hhhhhHHHHHHHHHHHHHHHHHHH
Q 012470 59 EVRYTDVDYLVFSDAASLMASGDSPYK---RTT--YRYSPLLAFFLIPNSI-----IHRSWGKFLFSASDLLVGVFIHSI 128 (463)
Q Consensus 59 ev~yTdid~~~~~dga~l~~~G~sPY~---~~~--~~y~PLl~~ll~p~~~-----~~p~~~kllf~~~Dll~a~ll~~i 128 (463)
.|+||.|||+-.-|=++...+|.=-|. ||| --||---.++...... ..-..++.+|...-+++-.+..++
T Consensus 19 ~VpYTEIDw~aYMqqv~~~~~Ge~DYs~i~GdTGPlVYPAGfVyiY~~Ly~lT~~G~~I~~aQ~iF~~lyl~t~~~v~~~ 98 (368)
T PF05208_consen 19 KVPYTEIDWKAYMQQVEGFLNGERDYSKIKGDTGPLVYPAGFVYIYSFLYYLTDGGENIRLAQYIFAGLYLATLALVFRI 98 (368)
T ss_pred eccCccccHHHHHHHHHHHHcCcccHHHhcCCCCCccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 577999999977666688888976675 443 4555444444432221 123467888988888887777766
Q ss_pred H-hhcCCCccchhhhHHhhhhcc-h-hhhhhcCCCcchHHHHHHHHHHHHHHhCChHHHHHHHHHHHHhhhhhHHHHHHH
Q 012470 129 L-KLRKVPEDLCMYSAVVWLFNP-F-TFTIGTRGNCEPIVCAMILWIIICLLKGNVLQAAFWYGLVVHFRIYPIIYVLPI 205 (463)
Q Consensus 129 ~-~~~~~~~~~~~~~~~lylfNP-l-~I~~s~~gs~~~~~~~~vl~~l~~~~~~~~~la~i~lalav~~klYPiill~pl 205 (463)
- +..+.++ +...+=.++- + .|. -.|-=-|++..+++-.++++..++|+.++++++++|+..|+--++++|.+
T Consensus 99 Y~~~~~~Pp----~~~~ll~lSkRlHSI~-vLRlFND~~a~~~~~~ai~~~~~~~w~~g~~~yS~avSIKMN~LL~~Pal 173 (368)
T PF05208_consen 99 YSRSRKLPP----WLLILLCLSKRLHSIF-VLRLFNDCFAMLFLYAAILLFQRRRWLLGSLLYSLAVSIKMNALLFAPAL 173 (368)
T ss_pred HHhccCCCc----hHHHHHHHHHHHHHhh-hhheecHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 6 3333332 1111111110 0 000 02333688999999999999999999999999999999999999999999
Q ss_pred HHHhcc
Q 012470 206 ILILDP 211 (463)
Q Consensus 206 ll~l~~ 211 (463)
++++..
T Consensus 174 l~~~l~ 179 (368)
T PF05208_consen 174 LVLLLQ 179 (368)
T ss_pred HHHHHH
Confidence 776643
No 12
>TIGR03663 conserved hypothetical protein TIGR03663. Members of this protein family, uncommon and rather sporadically distributed, are found almost always in the same genomes as members of family TIGR03662, and frequently as a nearby gene. Members show some N-terminal sequence similarity with Pfam family pfam02366, dolichyl-phosphate-mannose-protein mannosyltransferase. The few invariant residues in this family, found toward the N-terminus, include a dipeptide DE, a tripeptide HGP, and two different Arg residues. Up to three members may be found in a genome. The function is unknown.
Probab=97.68 E-value=0.042 Score=58.79 Aligned_cols=149 Identities=13% Similarity=0.149 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHHHhCcccccceeeeecCCcchhHhh-HHHHHhCCCCCCCCCCcccChhHHHHHhhhhh---hhhhhH
Q 012470 35 SLLWLSAIFRVILIVYGEWQDSHMEVRYTDVDYLVFSD-AASLMASGDSPYKRTTYRYSPLLAFFLIPNSI---IHRSWG 110 (463)
Q Consensus 35 ~~~~~a~~lRl~L~~~~~~~d~~~ev~yTdid~~~~~d-ga~l~~~G~sPY~~~~~~y~PLl~~ll~p~~~---~~p~~~ 110 (463)
.+.++++++|+.-+-.+.+ |-|--+..+ +-+++++|.--| ++..++|++.++...... ......
T Consensus 6 ~i~l~al~lRl~~Lg~~~~----------~~DEa~ya~~a~~ml~~g~~~~--~p~~h~Pll~wl~A~~~~lFG~se~a~ 73 (439)
T TIGR03663 6 LIVLFALLLRLFELGLRVF----------HHDEAIHASFILKLLETGVYSY--DPAYHGPFLYHITAAVFHLFGISDATA 73 (439)
T ss_pred HHHHHHHHHHHHhcCCCCC----------CCCchhHHHHHHHHHhcCCCCc--CCCCCCCHHHHHHHHHHHHhCCCHHHH
Confidence 4566777888877532221 112223333 335566664333 333347777655422111 011122
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCccchhhhHHhhhhcchhhhhhcCCCcchHHHHHHHHHHHHHHhC-------ChHH
Q 012470 111 KFLFSASDLLVGVFIHSILKLRKVPEDLCMYSAVVWLFNPFTFTIGTRGNCEPIVCAMILWIIICLLKG-------NVLQ 183 (463)
Q Consensus 111 kllf~~~Dll~a~ll~~i~~~~~~~~~~~~~~~~lylfNPl~I~~s~~gs~~~~~~~~vl~~l~~~~~~-------~~~l 183 (463)
++.=+++-++ ..+++.+.++. ..++.....+.+-+++|..+..+--...|+...++.++++++..+. ...+
T Consensus 74 RL~~aL~g~~-v~l~~~~~r~~-~~~~~al~AAllla~sp~~~~~sr~~~~D~~l~~f~~lal~~l~r~~~~~~~~~~~l 151 (439)
T TIGR03663 74 RLLPAVFGVL-LPLTAWLYRKR-LGDNEVLWAAVLLAFSPVMVYYSRFMRNDIFVAFFTLLAVGAAFRYLDTGKRRYLFL 151 (439)
T ss_pred HHHHHHHHHH-HHHHHHHHHHH-cCcHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 3222232222 12222233322 2233344556677899999888766689999999999999887642 2368
Q ss_pred HHHHHHHHHHhhhh
Q 012470 184 AAFWYGLVVHFRIY 197 (463)
Q Consensus 184 a~i~lalav~~klY 197 (463)
+++++|+++..|-.
T Consensus 152 ag~~~gLa~ltKg~ 165 (439)
T TIGR03663 152 AASALALAFTSKEN 165 (439)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999954
No 13
>PF09852 DUF2079: Predicted membrane protein (DUF2079); InterPro: IPR018650 This entry is represented by Sulfolobus virus STSV1, Orf64. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry contains a family of various integral membrane proteins with no known function.
Probab=97.67 E-value=0.0023 Score=68.41 Aligned_cols=147 Identities=18% Similarity=0.239 Sum_probs=104.2
Q ss_pred cCCcchhHhhHHHHHhCCCCCCCC---C---CcccChhHHHHHhhhhhhhhhhHHHHH--HHHHHHHHHHHHHHHhhcCC
Q 012470 63 TDVDYLVFSDAASLMASGDSPYKR---T---TYRYSPLLAFFLIPNSIIHRSWGKFLF--SASDLLVGVFIHSILKLRKV 134 (463)
Q Consensus 63 Tdid~~~~~dga~l~~~G~sPY~~---~---~~~y~PLl~~ll~p~~~~~p~~~kllf--~~~Dll~a~ll~~i~~~~~~ 134 (463)
+..|.-.+.++.+...+|.-|++. + ..|.+|++.. +.|....+|..--++. +++=.++++.+++++|+++.
T Consensus 8 ~~~DlGif~Q~~~~~~~g~~~~~t~~~~~~lg~HfsPil~l-l~Ply~l~Ps~~tLli~Qal~la~~~~pl~~lar~~~~ 86 (449)
T PF09852_consen 8 PSFDLGIFDQAIWSYAHGRAPISTIEGQNHLGDHFSPILYL-LAPLYRLFPSPLTLLIVQALLLALGAIPLYRLARRRLL 86 (449)
T ss_pred CchhHHHHHHHHHHHhCCCCceecccccccccccchHHHHH-HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 445777888999999999877652 2 3588888764 4455555554222222 23334556778889988866
Q ss_pred CccchhhhHHhhhhcchhhhhhcCC-CcchHHHHHHHHHHHHHHhCChHHHHHHHHHHHHhh--hhhHHHHHHHHHHhc
Q 012470 135 PEDLCMYSAVVWLFNPFTFTIGTRG-NCEPIVCAMILWIIICLLKGNVLQAAFWYGLVVHFR--IYPIIYVLPIILILD 210 (463)
Q Consensus 135 ~~~~~~~~~~lylfNPl~I~~s~~g-s~~~~~~~~vl~~l~~~~~~~~~la~i~lalav~~k--lYPiill~plll~l~ 210 (463)
+++.....++.|++||.+......+ +.+.+..-+++.+++++.+||+..+.++..+....| ....+...-+.+.++
T Consensus 87 ~~~~a~~~~~~ylL~p~~~~~~~~dFH~~~~avPll~~~~~~~~~~r~~~~~~~~ll~llvKEd~~l~v~~~gl~~~~~ 165 (449)
T PF09852_consen 87 SRRLALLIALAYLLSPGLQGANLFDFHPVAFAVPLLLWALYALERRRWRLFILWALLLLLVKEDLGLTVAGIGLYLLLR 165 (449)
T ss_pred CcHHHHHHHHHHHHhHHHHhhhhCCCcHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 7777778899999999999876655 788888888999999999999988888888887777 444444443444443
No 14
>COG5542 Predicted integral membrane protein [Function unknown]
Probab=97.61 E-value=0.00063 Score=70.92 Aligned_cols=105 Identities=17% Similarity=0.241 Sum_probs=88.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhhHHhhhhcchhhhhh-cCCCcchHHHHHHHHHHHHHHhCChHHHHH
Q 012470 108 SWGKFLFSASDLLVGVFIHSILKLRKVPEDLCMYSAVVWLFNPFTFTIG-TRGNCEPIVCAMILWIIICLLKGNVLQAAF 186 (463)
Q Consensus 108 ~~~kllf~~~Dll~a~ll~~i~~~~~~~~~~~~~~~~lylfNPl~I~~s-~~gs~~~~~~~~vl~~l~~~~~~~~~la~i 186 (463)
..+++.=..+|..+++.++++.|.+=...+.+.....+|-++|.+|..+ ..|.||++-.++..+++|+..+++...|++
T Consensus 117 l~~~l~s~~~~~~~ay~lY~~tk~~y~~~~~a~fa~i~~~~~P~~i~~s~iw~~teSlf~ll~~l~iyf~~~k~~~~a~~ 196 (420)
T COG5542 117 LAIKLFSNIADFVAAYFLYKITKLRYGLGSMARFATILVILSPSVIYNSAIWGQTESLFTLLSILAIYFFSIKKQIPALF 196 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccchhhhheEEEEEeccHHHhhhhHHhccchHHHHHHHHHHHHHHccchhHHHH
Confidence 3556666799999999999999875322344556778899999999998 477999999999999999999999999999
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHhccc
Q 012470 187 WYGLVVHFRIYPIIYVLPIILILDPL 212 (463)
Q Consensus 187 ~lalav~~klYPiill~plll~l~~~ 212 (463)
++|+|+..|.--+++.|-++..+.+.
T Consensus 197 ~faLa~l~Rsngi~~~p~fl~~~ik~ 222 (420)
T COG5542 197 FFALATLFRSNGIFLSPLFLIPLIKN 222 (420)
T ss_pred HHHHHHHhccchhHHHHHHHHHHHhh
Confidence 99999999999888887776666543
No 15
>KOG2762 consensus Mannosyltransferase [Carbohydrate transport and metabolism]
Probab=97.57 E-value=0.011 Score=60.56 Aligned_cols=149 Identities=17% Similarity=0.280 Sum_probs=95.9
Q ss_pred eeeeecCCcchhHhhHHHHHhCCCCCCC---CCC--cccChhHHHHHhhhhh-----hhhhhHHHHHHHHHHHHHHHHHH
Q 012470 58 MEVRYTDVDYLVFSDAASLMASGDSPYK---RTT--YRYSPLLAFFLIPNSI-----IHRSWGKFLFSASDLLVGVFIHS 127 (463)
Q Consensus 58 ~ev~yTdid~~~~~dga~l~~~G~sPY~---~~~--~~y~PLl~~ll~p~~~-----~~p~~~kllf~~~Dll~a~ll~~ 127 (463)
-.|.||.|||+-.-|-.+...+|.--|. ||| --||---.++....++ ..--.++.+|...=+++-.+..+
T Consensus 46 ~kV~YTEIDw~AYM~qve~fl~G~~dY~ql~GdTGPLVYPAGhv~iy~~ly~lTs~g~nv~~aQ~iF~~lYl~tLalv~~ 125 (429)
T KOG2762|consen 46 SKVPYTEIDWKAYMEQVEGFLNGELDYSQLVGDTGPLVYPAGHVYIYSLLYYLTSGGTNVRRAQYIFAGLYLLTLALVLR 125 (429)
T ss_pred eecCcceecHHHHHHHHHHHHhcccchhhhcCCCCCccccchHHHHHHHHHHHHcCCCeeehHHHHHHHHHHHHHHHHHH
Confidence 3578999999988777788888987775 444 4454333333322211 11124677777777766665555
Q ss_pred HH-hhcCCCccchhhhHHhhhhcchhhhhh--cCCCcchHHHHHHHHHHHHHHhCChHHHHHHHHHHHHhhhhhHHHHHH
Q 012470 128 IL-KLRKVPEDLCMYSAVVWLFNPFTFTIG--TRGNCEPIVCAMILWIIICLLKGNVLQAAFWYGLVVHFRIYPIIYVLP 204 (463)
Q Consensus 128 i~-~~~~~~~~~~~~~~~lylfNPl~I~~s--~~gs~~~~~~~~vl~~l~~~~~~~~~la~i~lalav~~klYPiill~p 204 (463)
+. |..+ .|.++..+-.+. .=|-+- .|-=-|.+...+...++...+++|+..+++++++|+..|+--+++.|.
T Consensus 126 iy~kt~~----vPp~vlvL~~ls-kRiHSIfVLRLFND~fa~lll~~~i~~~l~qkw~~gs~~fSlAvSVKMNvLLyaPa 200 (429)
T KOG2762|consen 126 IYHKTVR----VPPWVLVLLCLS-KRIHSIFVLRLFNDPFAMLLLYVAILLFLKQKWLVGSIFFSLAVSVKMNVLLYAPA 200 (429)
T ss_pred HHHHhcc----CChHHHHHHHHH-HHHHHhhhhHHhcchHHHHHHHHHHHHHHHHHHHhHhhhheeehhhhhhhHHHHHH
Confidence 55 2222 222332222222 211111 122358888888888898999999999999999999999999999988
Q ss_pred HHHHhcc
Q 012470 205 IILILDP 211 (463)
Q Consensus 205 lll~l~~ 211 (463)
+++++..
T Consensus 201 ll~~lL~ 207 (429)
T KOG2762|consen 201 LLLLLLQ 207 (429)
T ss_pred HHHHHHH
Confidence 8876654
No 16
>PRK13279 arnT 4-amino-4-deoxy-L-arabinose transferase; Provisional
Probab=97.38 E-value=0.046 Score=60.12 Aligned_cols=139 Identities=14% Similarity=0.106 Sum_probs=83.9
Q ss_pred cchhHhhHHH-HHhCC--CCCCCCC-C-cccChhHHHHHhhhhh---hhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 012470 66 DYLVFSDAAS-LMASG--DSPYKRT-T-YRYSPLLAFFLIPNSI---IHRSWGKFLFSASDLLVGVFIHSILKLRKVPED 137 (463)
Q Consensus 66 d~~~~~dga~-l~~~G--~sPY~~~-~-~~y~PLl~~ll~p~~~---~~p~~~kllf~~~Dll~a~ll~~i~~~~~~~~~ 137 (463)
|--+.-|.++ ++++| ..|+-.| . ++.||+..++...... ......++.-+++-++++++++.+.++...+++
T Consensus 32 DE~ryA~iareMl~sGdWlvP~~~g~~y~eKPPL~yWl~Als~~LFG~~~~a~RLpsaL~~~lt~llvy~larrl~~~r~ 111 (552)
T PRK13279 32 DETRYAEISREMLASGDWIVPHFLGLRYFEKPIAGYWINSIGQWLFGDNNFGVRFGSVFSTLLSALLVYWLALRLWRDRR 111 (552)
T ss_pred chHHHHHHHHHHHHhCCcCccccCCCcCCCCCcHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCcH
Confidence 3334444454 44445 4676533 3 4667877655322111 112234445556666777777777766433444
Q ss_pred chhhhHHhhhhcchhhhhhcCCCcchHHHHHHHHHH---HHHHhC-----C---hHHHHHHHHHHHHhhhhhHHHHHHH
Q 012470 138 LCMYSAVVWLFNPFTFTIGTRGNCEPIVCAMILWII---ICLLKG-----N---VLQAAFWYGLVVHFRIYPIIYVLPI 205 (463)
Q Consensus 138 ~~~~~~~lylfNPl~I~~s~~gs~~~~~~~~vl~~l---~~~~~~-----~---~~la~i~lalav~~klYPiill~pl 205 (463)
.....+.+++.+|.+...+.-...|....+++.+++ |.+.+. + +.+.|++.|++.-.| .|+.+++|.
T Consensus 112 ~AllAaLIlls~~~v~~~g~~a~~D~~l~~fi~lal~~f~~~~~~~~~~~~~~~~lllGla~Glg~LTK-G~ial~lP~ 189 (552)
T PRK13279 112 TALLAALIYLSLFLVYGIGTYAVLDPMITLWLTAAMCSFWLALQAQTRRGKIGGYLLLGLACGMGFMTK-GFLALAVPV 189 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHhc-chHHHHHHH
Confidence 456678889999999887766678988877776554 333331 1 356788889999999 455555553
No 17
>PF02366 PMT: Dolichyl-phosphate-mannose-protein mannosyltransferase ; InterPro: IPR003342 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Dolichyl-phosphate-mannose-protein mannosyltransferase proteins 2.4.1.109 from EC belong to the glycosyltransferase family 39 (GT39 from CAZY) and are responsible for O-linked glycosylation of proteins. They catalyse the reaction: Dolichyl phosphate D-mannose + protein -> dolichyl phosphate + O-D-mannosyl-protein. The transfer of mannose to seryl and threonyl residues of secretory proteins is catalyzed by a family of protein mannosyltransferases in Saccharomyces cerevisiae coded for by seven genes (PMT1-7). Protein O-glycosylation is essential for cell wall rigidity and cell integrity and this protein modification is vital for S. cerevisiae [].; GO: 0000030 mannosyltransferase activity, 0006493 protein O-linked glycosylation, 0016020 membrane
Probab=97.34 E-value=0.0042 Score=60.67 Aligned_cols=158 Identities=19% Similarity=0.246 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHhCc--ccccceeeeecCCcch--hHhhHHHHHhCCCCCCCCC-------CcccChhHHHHHhhhhh
Q 012470 36 LLWLSAIFRVILIVYGE--WQDSHMEVRYTDVDYL--VFSDAASLMASGDSPYKRT-------TYRYSPLLAFFLIPNSI 104 (463)
Q Consensus 36 ~~~~a~~lRl~L~~~~~--~~d~~~ev~yTdid~~--~~~dga~l~~~G~sPY~~~-------~~~y~PLl~~ll~p~~~ 104 (463)
+..+++.+|+..+..|. ..| | ++.|-. +.-|+.+...+. .|+... ..+|+|..-+.......
T Consensus 3 ~~~~~~~~~~~~l~~p~~~v~d---e---~~~~~~~~~Y~~~~~~~~~~-p~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 75 (245)
T PF02366_consen 3 LTLLSLLLRFWLLSLPNDGVFD---E---VHFDEFANRYAEHTRFMDEH-PPLGKLLFALGAYLFGYPPLYYWISAIGFY 75 (245)
T ss_pred HHHHHHHHHHHHHhcchhhhhc---c---ccccHHHHHHHhcceeeccC-CcccchhhhhhhHHhcccchhhHHHhhhhh
Confidence 45678889999988754 122 1 111111 222222222221 232211 23566766544321110
Q ss_pred ----hhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhhHHhhhhcchhhhhhcCCCcchHHHHHHHHHHHHHHhCC
Q 012470 105 ----IHRSWGKFLFSASDLLVGVFIHSILKLRKVPEDLCMYSAVVWLFNPFTFTIGTRGNCEPIVCAMILWIIICLLKGN 180 (463)
Q Consensus 105 ----~~p~~~kllf~~~Dll~a~ll~~i~~~~~~~~~~~~~~~~lylfNPl~I~~s~~gs~~~~~~~~vl~~l~~~~~~~ 180 (463)
......+.+=+++..+++.+++.+.++.+.++......+++++++|..+..+-....|+...++++++++++.+..
T Consensus 76 ~~~~~~~~~~R~~~~l~~~~~~~l~y~~~~~~~~s~~~al~aa~l~~~~~~~~~~sr~~~~D~~l~~f~~la~~~~~~~~ 155 (245)
T PF02366_consen 76 YFGSVNYWAARLPSALFGALTVPLVYLILRRLFGSRRAALLAALLLALDPSLIVQSRYALLDSILLFFILLAIYCLLRWY 155 (245)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 1123445666677788888888787776655555667788899999999999877999999999999999887652
Q ss_pred ------------hHHHHHHHHHHHHhhhhhHHH
Q 012470 181 ------------VLQAAFWYGLVVHFRIYPIIY 201 (463)
Q Consensus 181 ------------~~la~i~lalav~~klYPiil 201 (463)
..++++++|+|+..| +|..+
T Consensus 156 ~~~~~~~~~~~~~~l~gi~lGla~~~K-~~~~~ 187 (245)
T PF02366_consen 156 RYQPFRRKWWLWLLLAGIALGLAILTK-GPGLL 187 (245)
T ss_pred hccccccccHHHHHHHHHHHHHHHHhc-hhHHH
Confidence 478999999999999 55443
No 18
>PF04188 Mannosyl_trans2: Mannosyltransferase (PIG-V)); InterPro: IPR007315 This is a family of eukaryotic ER membrane proteins that are involved in the synthesis of glycosylphosphatidylinositol (GPI), a glycolipid that anchors many proteins to the eukaryotic cell surface. Proteins in this family are involved in transferring the second mannose in the biosynthetic pathway of GPI [], [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0006506 GPI anchor biosynthetic process, 0005789 endoplasmic reticulum membrane, 0016021 integral to membrane
Probab=97.16 E-value=0.45 Score=51.05 Aligned_cols=94 Identities=15% Similarity=0.177 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHhhcCCCccchhhhHHhhhhcchhhhhhcCCCcchHHHHHHHHHHHHHHhCChHHHHHHHHHHHHhh
Q 012470 116 ASDLLVGVFIHSILKLRKVPEDLCMYSAVVWLFNPFTFTIGTRGNCEPIVCAMILWIIICLLKGNVLQAAFWYGLVVHFR 195 (463)
Q Consensus 116 ~~Dll~a~ll~~i~~~~~~~~~~~~~~~~lylfNPl~I~~s~~gs~~~~~~~~vl~~l~~~~~~~~~la~i~lalav~~k 195 (463)
++=++++..++++.++...+++.+...+.++.+||-.+.-+ +.=+|++-.++...++++..+++...|+++.|+|+..+
T Consensus 121 ~~~~la~~~L~~l~~~~~~~~~~a~~a~ll~~~~PasiF~s-a~YsEslf~~lsf~gl~~~~~~~~~~a~~~~~la~~~R 199 (443)
T PF04188_consen 121 VAFLLAAVALYRLTRRVFKSRKLALLAALLFIFSPASIFLS-APYSESLFALLSFAGLYLLERGRWWLAGLLFALATLTR 199 (443)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHccHHHHhh-cCccHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 34455566777777654334444456788899999998764 44899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHhc
Q 012470 196 IYPIIYVLPIILILD 210 (463)
Q Consensus 196 lYPiill~plll~l~ 210 (463)
---++...++.....
T Consensus 200 snGll~~~~~~~~~l 214 (443)
T PF04188_consen 200 SNGLLLAGFFAYELL 214 (443)
T ss_pred hhHHHHHHHHHHHHH
Confidence 888888877765543
No 19
>PF13231 PMT_2: Dolichyl-phosphate-mannose-protein mannosyltransferase
Probab=96.88 E-value=0.015 Score=51.77 Aligned_cols=119 Identities=13% Similarity=0.104 Sum_probs=89.3
Q ss_pred cChhHHHHHhhhhh---hhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhhHHhhhhcchhhhhhcCCCcchHHHH
Q 012470 91 YSPLLAFFLIPNSI---IHRSWGKFLFSASDLLVGVFIHSILKLRKVPEDLCMYSAVVWLFNPFTFTIGTRGNCEPIVCA 167 (463)
Q Consensus 91 y~PLl~~ll~p~~~---~~p~~~kllf~~~Dll~a~ll~~i~~~~~~~~~~~~~~~~lylfNPl~I~~s~~gs~~~~~~~ 167 (463)
+||+..++...... ..+...++.-.++-.++.+.++++.|+.. +++.....+.++.+.|..+..+.....|....+
T Consensus 2 ~pPl~~~~~~~~~~l~G~~~~~~~~~~~l~~~~~~~~~y~i~r~~~-~~~~a~~~~l~~~~~p~~~~~~~~~~~~~~~~~ 80 (159)
T PF13231_consen 2 HPPLYFLLLALFFKLFGDSVWALRLFNILFSLLTLLLIYLIARRLF-GRRAALIAALLLALSPMFIFYSASARPDMLLLF 80 (159)
T ss_pred CChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHC-CchHHHHHHHHHHHhHHHHHHHHHHhHHHHHHH
Confidence 57887665533221 12345667778888899999999998763 355566778889999999888887788999999
Q ss_pred HHHHHHHHHHh----CC---hHHHHHHHHHHHHhhhhhHHHHHHHHHHhc
Q 012470 168 MILWIIICLLK----GN---VLQAAFWYGLVVHFRIYPIIYVLPIILILD 210 (463)
Q Consensus 168 ~vl~~l~~~~~----~~---~~la~i~lalav~~klYPiill~plll~l~ 210 (463)
+.+.++|...| ++ ..+++++.|++...|..-+++.+++..++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~k~~~~~~~~~~~~~l~ 130 (159)
T PF13231_consen 81 FFLLALYAFYRYIKSKKWRWWILAGLLLGLAFLTKYTFLLLIPALLLYLL 130 (159)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988863 22 468999999999999887777776665443
No 20
>KOG2575 consensus Glucosyltransferase - Alg6p [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=96.27 E-value=0.14 Score=53.77 Aligned_cols=167 Identities=21% Similarity=0.271 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHHHhC---c-----ccc---cc--eeeee-cCC-cchhHhhHHHHHhCCCCCCCCCCcccChhHHH--
Q 012470 35 SLLWLSAIFRVILIVYG---E-----WQD---SH--MEVRY-TDV-DYLVFSDAASLMASGDSPYKRTTYRYSPLLAF-- 97 (463)
Q Consensus 35 ~~~~~a~~lRl~L~~~~---~-----~~d---~~--~ev~y-Tdi-d~~~~~dga~l~~~G~sPY~~~~~~y~PLl~~-- 97 (463)
.++..++.+|...-.+| . +-| +| .|+.. +|+ +|+.-..--.+..=|. .||||.++
T Consensus 35 ~i~~~~l~~r~~Isl~pYSG~~~PPmyGDyEAQRHWmEIT~nLPv~qWY~n~t~NDLqYWGL--------DYPPLTAYhS 106 (510)
T KOG2575|consen 35 PILLVLLCVRSAISLNPYSGAGSPPMYGDYEAQRHWMEITVNLPVSQWYFNGTHNDLQYWGL--------DYPPLTAYHS 106 (510)
T ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCCCCHHHHHHHHHHhhcCcHHHHhhcCCCCccceecC--------CCCcHHHHHH
Confidence 36778899999887731 1 222 22 45443 566 6654211112333344 49999985
Q ss_pred -HHhhhhh------------------hhhhhHHHHHHHHHHHHH---HHHH-HHH-hhcCCCccchhhhHHhhhhcchhh
Q 012470 98 -FLIPNSI------------------IHRSWGKFLFSASDLLVG---VFIH-SIL-KLRKVPEDLCMYSAVVWLFNPFTF 153 (463)
Q Consensus 98 -ll~p~~~------------------~~p~~~kllf~~~Dll~a---~ll~-~i~-~~~~~~~~~~~~~~~lylfNPl~I 153 (463)
+++-... .+..+.+.--++.|+++- .+.+ +-. |.+ +...+...+++-+++|=.+
T Consensus 107 yl~G~i~~f~NP~wvaL~tSRGfES~~hKlfMR~TViisd~liy~Pa~ify~~~~~r~~--~~~~~~a~~~~iLl~P~L~ 184 (510)
T KOG2575|consen 107 YLLGIIGNFINPEWVALHTSRGFESIAHKLFMRSTVIISDLLIYLPALIFYFKWLHRTR--SKKSKIAYAALILLYPSLL 184 (510)
T ss_pred HHHHHHHhhcChhHhhhhccCCcccHHHHHHHHHHHHHHhHHHHhhHHHHHHHHhhhcc--CcccHHHHHHHHHhCCceE
Confidence 2221110 012344444456666553 1222 222 222 2222334567889999999
Q ss_pred hhhcCC-CcchHHHHHHHHHHHHHHhCChHHHHHHHHHHHHhhhhhHHHHHHHHHHhcc
Q 012470 154 TIGTRG-NCEPIVCAMILWIIICLLKGNVLQAAFWYGLVVHFRIYPIIYVLPIILILDP 211 (463)
Q Consensus 154 ~~s~~g-s~~~~~~~~vl~~l~~~~~~~~~la~i~lalav~~klYPiill~plll~l~~ 211 (463)
++--++ .-.+++.-+++.++....+++.++|++++.+|...|=.-+...+|+..++..
T Consensus 185 LID~GHFQYNsisLGl~~~ai~~ll~~~~~~as~~F~LAlnyKQMeLY~A~pfF~fLLg 243 (510)
T KOG2575|consen 185 LIDHGHFQYNSISLGLTLYAIAALLKNFYVLASVLFVLALNYKQMELYHALPFFAFLLG 243 (510)
T ss_pred EEecCcceechhHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHH
Confidence 986665 5667778888999999999999999999999999999999999999887754
No 21
>COG4346 Predicted membrane-bound dolichyl-phosphate-mannose-protein mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=0.15 Score=52.48 Aligned_cols=128 Identities=20% Similarity=0.185 Sum_probs=90.8
Q ss_pred hhHHhhhhcchhhhhhcCCCcchHHHHHHHHHHHHHHhCChHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccccCCCCc
Q 012470 141 YSAVVWLFNPFTFTIGTRGNCEPIVCAMILWIIICLLKGNVLQAAFWYGLVVHFRIYPIIYVLPIILILDPLFFRSGLKP 220 (463)
Q Consensus 141 ~~~~lylfNPl~I~~s~~gs~~~~~~~~vl~~l~~~~~~~~~la~i~lalav~~klYPiill~plll~l~~~~~~~~~~~ 220 (463)
..+++-++.|..-..+..-.-|.=..+|+++.+|++..+|...|++.+|+|...|+.-.. ..|++.+..-..+..
T Consensus 188 ~aA~~~alDp~l~amg~VAMLDIhvaFFtaL~~~fl~~~R~l~sgiAlGLAAs~K~SG~~-vfpil~~~~l~~~~~---- 262 (438)
T COG4346 188 IAALLAALDPLLRAMGGVAMLDIHVAFFTALFMYFLANDRPLWSGIALGLAASVKLSGAF-VFPILWYAILKENDL---- 262 (438)
T ss_pred HHHHHHhhCcHHHHhcchhHHHHHHHHHHHHHHHHHhcCCeehHHHHHHHHHHHhhcccc-hHHHHHHHHHhhhhH----
Confidence 456678999999887655588999999999999999999999999999999999998776 667766554321110
Q ss_pred ccccccccccccccccccccchhhHHHHHHhhhhhhH-HHHHHHHHHHHHHHHHHHHHHhc-----hHHHHHhhhheeee
Q 012470 221 RLQNWSSRQDKTLRSSNKVTDQYDLWKALKTVFSKER-VMFGLVSGAVFLSCTGLFFYLYG-----WEFLHEALLYHLTR 294 (463)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~~~~y~~~G-----w~Fl~~tY~~~l~~ 294 (463)
+++ ..-.++-...+++....--.-+| .||+-+ ...|.+.
T Consensus 263 ----------------------------------k~~~iagilip~~vfll~~~Pii~~~G~~~Wl~E~i~~-~sWh~Ts 307 (438)
T COG4346 263 ----------------------------------KERFIAGILIPALVFLLPEIPIIKAIGFIPWLEEFIIS-LSWHTTS 307 (438)
T ss_pred ----------------------------------HHHHHhhhhHhhHHHHhcccHHHHHhCchHHHHHHHHH-ceeeecc
Confidence 011 11223334445555444444556 345555 6788888
Q ss_pred cCCCCCCchhHHHH
Q 012470 295 TDPRHNFSIYFYHI 308 (463)
Q Consensus 295 ~D~rpN~gl~wYff 308 (463)
+--.|-.|..|=.|
T Consensus 308 r~~~P~~st~w~Wf 321 (438)
T COG4346 308 RPPGPQASTPWDWF 321 (438)
T ss_pred CCCCCCCCChHHHH
Confidence 88888899888776
No 22
>PF03155 Alg6_Alg8: ALG6, ALG8 glycosyltransferase family; InterPro: IPR004856 N-linked (asparagine-linked) glycosylation of proteins is mediated by a highly conserved pathway in eukaryotes, in which a lipid (dolichol phosphate)-linked oligosaccharide is assembled at the endoplasmic reticulum membrane prior to the transfer of the oligosaccharide moiety to the target asparagine residues. This oligosaccharide is composed of Glc(3)Man(9)GlcNAc(2). The addition of the three glucose residues is the final series of steps in the synthesis of the oligosaccharide precursor. Alg6 transfers the first glucose residue, and Alg8 transfers the second one []. In the human alg6 gene, a C-T transition, which causes Ala333 to be replaced with Val, has been identified as the cause of a congenital disorder of glycosylation, designated as type Ic OMIM:603147 []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0005789 endoplasmic reticulum membrane
Probab=95.54 E-value=0.95 Score=48.94 Aligned_cols=104 Identities=19% Similarity=0.281 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHhh----cCCCccchhhhHHhhhhcchhhhhhcCC-CcchHHHHHHHHHHHHHHhCChH
Q 012470 109 WGKFLFSASDLLVGVF-IHSILKL----RKVPEDLCMYSAVVWLFNPFTFTIGTRG-NCEPIVCAMILWIIICLLKGNVL 182 (463)
Q Consensus 109 ~~kllf~~~Dll~a~l-l~~i~~~----~~~~~~~~~~~~~lylfNPl~I~~s~~g-s~~~~~~~~vl~~l~~~~~~~~~ 182 (463)
+.+.-=++.|++..+- +....+. ++.+++++....++-++||=.|++-=++ .-.++.--+.++++.++.+||..
T Consensus 100 f~R~tVi~~d~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~PgLilIDH~HFQYN~~~lGl~l~si~~~~~~~~l 179 (469)
T PF03155_consen 100 FMRLTVIVSDLLLYIPAVLFFCKSSGRSRNQSSKQRFIALLLILLNPGLILIDHGHFQYNGFLLGLLLLSIAALIRGRYL 179 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHCchHHhhhhhhhhHHHHHHHHHHHHHHHHHhccHH
Confidence 4455556888776654 3322221 2223334455677789999999876554 56788888899999999999999
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHhccc
Q 012470 183 QAAFWYGLVVHFRIYPIIYVLPIILILDPL 212 (463)
Q Consensus 183 la~i~lalav~~klYPiill~plll~l~~~ 212 (463)
+|+++++++.+.|=.-+.+.||...++.++
T Consensus 180 ~~a~~F~~~Ln~Kqm~LY~Ap~~f~yLL~~ 209 (469)
T PF03155_consen 180 LGAILFSLLLNFKQMFLYYAPAFFVYLLGS 209 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988899999999888665
No 23
>TIGR03766 conserved hypothetical integral membrane protein. Models TIGR03110, TIGR03111, and TIGR03112 describe a three-gene system found in several Gram-positive bacteria, where TIGR03110 is distantly related to a putative transpeptidase, exosortase (TIGR02602). This model describes a small clade that correlates by both gene clustering and phyletic pattern, although imperfectly, to the three gene system. Both this narrow clade, and the larger set of full-length homologous integral membrane proteins, have an especially well-conserved region near the C-terminus with an invariant tyrosine. The function is unknown.
Probab=93.57 E-value=1.9 Score=46.83 Aligned_cols=162 Identities=14% Similarity=0.076 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHHHHh-CcccccceeeeecCC-cchhHhhHHHHHhCCCCCCCCCCcccC---hhHHHHHhhhhhh---
Q 012470 34 RSLLWLSAIFRVILIVY-GEWQDSHMEVRYTDV-DYLVFSDAASLMASGDSPYKRTTYRYS---PLLAFFLIPNSII--- 105 (463)
Q Consensus 34 ~~~~~~a~~lRl~L~~~-~~~~d~~~ev~yTdi-d~~~~~dga~l~~~G~sPY~~~~~~y~---PLl~~ll~p~~~~--- 105 (463)
..++++++++|+..+.. +. +|. |+..+-|+|. +.+.+-+++--.+|| |++.+. ......
T Consensus 69 ~~l~~~~~i~ql~~i~~~~~----------~p~~D~~~v~~~A~--~~~~~~~~~Y~~~yPnn~g~~l~~-~~l~kifg~ 135 (483)
T TIGR03766 69 IVIFILLLILQLILVTALHP----------LIGWDAGAVHTAAT--KSNESSISNYFSRNPNNLFLLLFM-HFLYKLFGE 135 (483)
T ss_pred HHHHHHHHHHHHHHHHHcCC----------CcCcCHHHHHHHHh--cCCCcccCceeeECCchHHHHHHH-HHHHHHhCc
Confidence 34566778889998884 43 455 8888877776 222222222112333 444321 111000
Q ss_pred -hhhhHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhhHHhhhhcchhhhhhcCCCcchHHHHHHHHHHHHHH---h-CC
Q 012470 106 -HRSWGKFLFSASDLLVGVFIHSILKLRKVPEDLCMYSAVVWLFNPFTFTIGTRGNCEPIVCAMILWIIICLL---K-GN 180 (463)
Q Consensus 106 -~p~~~kllf~~~Dll~a~ll~~i~~~~~~~~~~~~~~~~lylfNPl~I~~s~~gs~~~~~~~~vl~~l~~~~---~-~~ 180 (463)
.....+++=+++=.+++++++++.++.. +++.....+.++++.|-.+.-..--=+|....+++.+++++.. + ++
T Consensus 136 ~~~~~~~llNil~~~~si~liy~i~k~lf-~~~~a~~a~~l~~l~~~~~~y~~~~Ysd~~~l~~~~l~l~~~~~~~~~~~ 214 (483)
T TIGR03766 136 TSWLFFDVVNIVLVDLSALILYKAVKKVF-NKKKAFVALYLFVLLLALSPYILIPYTDTWVLPFVSLFLFLYTVISKKTD 214 (483)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccc
Confidence 1122344555555566667777775542 2333445555666665432222211355556666666654332 2 11
Q ss_pred -------hHHHHHHHHHHHHhhhhhHHHHHHHHHHh
Q 012470 181 -------VLQAAFWYGLVVHFRIYPIIYVLPIILIL 209 (463)
Q Consensus 181 -------~~la~i~lalav~~klYPiill~plll~l 209 (463)
.+++|+++|++..+|.--+++++++++++
T Consensus 215 ~~~~~~~~Il~gillal~~~iKp~~iI~liA~~i~~ 250 (483)
T TIGR03766 215 LRKKIALSILLGVLLAIAYFIKPSAIIFVIAIFIVL 250 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 26899999999999999888887776544
No 24
>COG3463 Predicted membrane protein [Function unknown]
Probab=93.36 E-value=1.8 Score=45.99 Aligned_cols=150 Identities=16% Similarity=0.189 Sum_probs=98.6
Q ss_pred eeecCCcchhHhhHHHHHhCCCCCCCCC-------CcccChhHHHHHhhhhhhhhhhHHHHH---HHHHHHHHHHHHHHH
Q 012470 60 VRYTDVDYLVFSDAASLMASGDSPYKRT-------TYRYSPLLAFFLIPNSIIHRSWGKFLF---SASDLLVGVFIHSIL 129 (463)
Q Consensus 60 v~yTdid~~~~~dga~l~~~G~sPY~~~-------~~~y~PLl~~ll~p~~~~~p~~~kllf---~~~Dll~a~ll~~i~ 129 (463)
..+|..|=-.+....+...+|.-=|++- -.|..|.+.. +.|.....|.. ..++ .++=-+.++.++.++
T Consensus 32 f~~ta~DLGI~sq~l~~~~~Gk~~Y~t~~~~~~~f~vhfqpilfL-lyP~Y~l~Psp-~~Lll~Q~i~ials~~p~y~lA 109 (458)
T COG3463 32 FNSTALDLGIFSQSLYTTSHGKLFYNTVEFQLTHFGVHFQPILFL-LYPFYKLFPSP-ETLLLIQAIAIALSSLPIYLLA 109 (458)
T ss_pred hcceeechHHHHHHHHHHhCCeeeccchhhhcccceeehhhHHHH-HHHHHHhCCcH-HHHHHHHHHHHHHhHHHHHHHH
Confidence 3446666666666667777887555532 2456666543 33443333321 1122 223334456666777
Q ss_pred hhcCCCccchhhhHHhhhhcchhhhhhcCC-CcchHHHHHHHHHHHHHHhCChHHHHHHHHHHHHhhhhhHHHHHHHHHH
Q 012470 130 KLRKVPEDLCMYSAVVWLFNPFTFTIGTRG-NCEPIVCAMILWIIICLLKGNVLQAAFWYGLVVHFRIYPIIYVLPIILI 208 (463)
Q Consensus 130 ~~~~~~~~~~~~~~~lylfNPl~I~~s~~g-s~~~~~~~~vl~~l~~~~~~~~~la~i~lalav~~klYPiill~plll~ 208 (463)
++....|+.+...+.+|++||.+..+..-. +.+++.+.++.++.|++.||++.+..+.+.+....|=--.+.++.+...
T Consensus 110 ~eil~~E~~al~isilYll~p~i~gi~~FDFH~m~~avp~~~~a~~f~~r~k~~l~li~lvlIl~tk~~a~liiIsl~i~ 189 (458)
T COG3463 110 KEILNGEKEALAISILYLLNPYIEGINLFDFHPMAFAVPLFLLAYYFLKRKKWKLFLIFLVLILLTKEDAFLIIISLLIW 189 (458)
T ss_pred HHHhcccHHHHHHHHHHHhchhccCchhhhcchHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 665445666777899999999998876443 8999999999999999999999999998888777776655555555555
Q ss_pred hcc
Q 012470 209 LDP 211 (463)
Q Consensus 209 l~~ 211 (463)
.+.
T Consensus 190 ~~~ 192 (458)
T COG3463 190 LRL 192 (458)
T ss_pred HHH
Confidence 443
No 25
>PF10131 PTPS_related: 6-pyruvoyl-tetrahydropterin synthase related domain; membrane protein; InterPro: IPR018776 This entry is found in various bacterial and archaeal hypothetical membrane proteins, as well as in tetratricopeptide TPR_2 repeat protein. Its function has not yet been established, though it shows similarity to 6-pyruvoyl-tetrahydropterin synthase.
Probab=92.24 E-value=23 Score=39.76 Aligned_cols=110 Identities=18% Similarity=0.226 Sum_probs=61.7
Q ss_pred cChhHHHHHhhhhh---hhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhhHHhhhhcchhhhhh-cCCC-cchHH
Q 012470 91 YSPLLAFFLIPNSI---IHRSWGKFLFSASDLLVGVFIHSILKLRKVPEDLCMYSAVVWLFNPFTFTIG-TRGN-CEPIV 165 (463)
Q Consensus 91 y~PLl~~ll~p~~~---~~p~~~kllf~~~Dll~a~ll~~i~~~~~~~~~~~~~~~~lylfNPl~I~~s-~~gs-~~~~~ 165 (463)
|||+-.++...... .....-++...++=++.|...+...|+.+. +..+...+.+|++.|+-...- .+|| .|.+.
T Consensus 4 YpPL~yyl~a~l~~l~g~~~~Ay~l~~~L~~~l~~~~~Y~~~R~~~~-~~~A~l~aiLyl~~py~l~~~y~rgni~e~lA 82 (616)
T PF10131_consen 4 YPPLPYYLGALLSLLFGNPIVAYKLFIFLAFFLGGLGMYFLGRRLGR-RKAAILAAILYLFSPYHLRNIYWRGNIPETLA 82 (616)
T ss_pred CCcHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhHHHHHHHHHHHhHHHHHHHHhcchHHHHHH
Confidence 68887655432211 112233555666667777778877777665 445667788999999877654 6665 55543
Q ss_pred HHHH---HHHHHHHHh-CC---hHHHHHHHHHHHHhhhhhHHH
Q 012470 166 CAMI---LWIIICLLK-GN---VLQAAFWYGLVVHFRIYPIIY 201 (463)
Q Consensus 166 ~~~v---l~~l~~~~~-~~---~~la~i~lalav~~klYPiil 201 (463)
-.++ +++++...+ |+ ....++.+++....-+...++
T Consensus 83 ~~llPlvll~~~~~~~~~~~r~~~~lAl~~all~lsHll~~ll 125 (616)
T PF10131_consen 83 FALLPLVLLFLYRFIKKRKYRYWILLALSMALLALSHLLSTLL 125 (616)
T ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhHHHHHH
Confidence 3232 233333332 32 345555666555444433333
No 26
>PF03901 Glyco_transf_22: Alg9-like mannosyltransferase family; InterPro: IPR005599 Members of this family are glycosylphosphatidylinositol mannosyltransferase enzymes 2.4.1.- from EC [, ]. At least some members are localised in endoplasmic reticulum and involved in GPI anchor biosynthesis [, ]. In yeast the SMP3 (YOR149C) has been implemented in plasmid stability [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0006506 GPI anchor biosynthetic process, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=90.81 E-value=24 Score=37.17 Aligned_cols=100 Identities=19% Similarity=0.321 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCccchhhhHHhhhhcchhhhhhcCCCcchHHHHHHHHHHHHHHh-----------
Q 012470 110 GKFLFSASDLLVGVFIHSILKLRKVPEDLCMYSAVVWLFNPFTFTIGTRGNCEPIVCAMILWIIICLLK----------- 178 (463)
Q Consensus 110 ~kllf~~~Dll~a~ll~~i~~~~~~~~~~~~~~~~lylfNPl~I~~s~~gs~~~~~~~~vl~~l~~~~~----------- 178 (463)
-+++.+++-.++-+.+++..++.- ..+.+.+...+-++++.....++|--.+++...+++.+++.+.+
T Consensus 84 ~Rl~~~~~s~~~d~~~~~~~~~~~-~~~~a~~~l~l~~~s~~~~~~~~Rtlsns~e~~l~~~al~~~~~~~~~~~~~~~~ 162 (418)
T PF03901_consen 84 PRLVLALLSALSDYYLYRLVKRLF-GSSVALWALLLSLFSWFMFYYSSRTLSNSFETILVLLALYLWLRSLSRSNSSSSS 162 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-CCchhhhhhhHHHhhhHHHHhhcccCccHHHHHHHHHHHHHHHHhhccCCCcccc
Confidence 344444444555555566444321 12234456777899999999999988999999999999999885
Q ss_pred -CChHHHHHHHHHHHHhhhhhHHHHHHHHHHhc
Q 012470 179 -GNVLQAAFWYGLVVHFRIYPIIYVLPIILILD 210 (463)
Q Consensus 179 -~~~~la~i~lalav~~klYPiill~plll~l~ 210 (463)
++....+++.++++-.+.--+++..|+.+...
T Consensus 163 ~~~~~~~~~l~~~~~~~Rpt~~~~~~pl~l~~l 195 (418)
T PF03901_consen 163 KRYLLAIGLLAGLAVFFRPTSALFWLPLGLYLL 195 (418)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23467778888999999999988888865543
No 27
>KOG2647 consensus Predicted Dolichyl-phosphate-mannose-protein mannosyltransferase [General function prediction only]
Probab=85.41 E-value=1.7 Score=46.08 Aligned_cols=88 Identities=18% Similarity=0.284 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCCccchhhhHHhhhhcchhhhhhcCCCcchHHHHHHHHHHHHHHhCChHHHHHHHHHHHHh
Q 012470 115 SASDLLVGVFIHSILKLRKVPEDLCMYSAVVWLFNPFTFTIGTRGNCEPIVCAMILWIIICLLKGNVLQAAFWYGLVVHF 194 (463)
Q Consensus 115 ~~~Dll~a~ll~~i~~~~~~~~~~~~~~~~lylfNPl~I~~s~~gs~~~~~~~~vl~~l~~~~~~~~~la~i~lalav~~ 194 (463)
..+=++++..++++.+....+++.....+.+|.|||-.|.-+. +=+|++-.++...+++...+|+...+..+++++...
T Consensus 133 ~~~f~la~~~Lyql~~~~~~~~k~s~~a~liFcfnPAsIF~ts-~YSEsLfa~~s~~Gi~~~~~~~~~~~~~~~~l~~~~ 211 (444)
T KOG2647|consen 133 IFFFMLAAVALYQLTRIILHDPKISFYAALLFCFNPASIFLTA-GYSESLFALFSFLGILFLEKGRQFTGTLLFSLATLV 211 (444)
T ss_pred HHHHHHHHHHHHHHHHHHhcChhHHhhhhheeEecchHhhhhH-HhhHHHHHHHHHHHHHHHhcCCccceehHHHHHHHH
Confidence 3555677777777776543344444567888999999998744 478999999999999999999988888999998888
Q ss_pred hhhhHHHHH
Q 012470 195 RIYPIIYVL 203 (463)
Q Consensus 195 klYPiill~ 203 (463)
+=--+.-.+
T Consensus 212 rSngil~~~ 220 (444)
T KOG2647|consen 212 RSNGILSAG 220 (444)
T ss_pred HhhhhhhHH
Confidence 766554443
No 28
>PF09913 DUF2142: Predicted membrane protein (DUF2142); InterPro: IPR018674 This family of conserved hypothetical proteins has no known function.
Probab=84.15 E-value=47 Score=34.52 Aligned_cols=87 Identities=11% Similarity=0.133 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhhHHhhhhcchhhhhhcCCCcchHHHHHHHHHHHHHHh----C-----
Q 012470 109 WGKFLFSASDLLVGVFIHSILKLRKVPEDLCMYSAVVWLFNPFTFTIGTRGNCEPIVCAMILWIIICLLK----G----- 179 (463)
Q Consensus 109 ~~kllf~~~Dll~a~ll~~i~~~~~~~~~~~~~~~~lylfNPl~I~~s~~gs~~~~~~~~vl~~l~~~~~----~----- 179 (463)
.+++.=.++-.+..++..|+.++. +...++-++-|+++..+.+-|.|++.+.+..+.+....+ +
T Consensus 123 l~Rl~nll~~~~l~~~Ai~~~p~~-------k~l~~~i~l~Pm~~~~~aS~s~D~~~~~~~~l~~a~~l~~~~~~~~~~~ 195 (389)
T PF09913_consen 123 LGRLFNLLLYALLVYLAIKLAPRG-------KWLLALIALLPMTLFQAASVSYDGLIIALAFLFIALLLRLYRKKKITRR 195 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHcchh-------HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhccCCCHH
Confidence 445444455545555555555332 145777889999999998889999998877766666654 1
Q ss_pred ChHHHHHHHHHHHHhh-hhhHHHH
Q 012470 180 NVLQAAFWYGLVVHFR-IYPIIYV 202 (463)
Q Consensus 180 ~~~la~i~lalav~~k-lYPiill 202 (463)
.....+++.++.+..| .|..+..
T Consensus 196 ~~~~l~v~~~ll~~~K~~y~~l~~ 219 (389)
T PF09913_consen 196 DLILLGVLAVLLALSKPPYIPLLL 219 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1356677777778888 4433333
No 29
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=81.22 E-value=0.48 Score=47.60 Aligned_cols=20 Identities=25% Similarity=0.343 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 012470 420 LWLAGLLFLAANTFVLIMIT 439 (463)
Q Consensus 420 ~~~~sLvf~~~~~~ll~~~i 439 (463)
.-+.++.|+++.++++..+.
T Consensus 139 iLaFcLAF~LaivlLIIAv~ 158 (381)
T PF05297_consen 139 ILAFCLAFLLAIVLLIIAVL 158 (381)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55666777777666655443
No 30
>PF11847 DUF3367: Domain of unknown function (DUF3367); InterPro: IPR021798 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is typically between 667 to 694 amino acids in length.
Probab=64.97 E-value=57 Score=37.01 Aligned_cols=101 Identities=12% Similarity=0.093 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCC-CccchhhhHHhhhhcchhhhhhcCCCcchHHHHHHHHHHHHHHhCC---------
Q 012470 111 KFLFSASDLLVGVFIHSILKLRKV-PEDLCMYSAVVWLFNPFTFTIGTRGNCEPIVCAMILWIIICLLKGN--------- 180 (463)
Q Consensus 111 kllf~~~Dll~a~ll~~i~~~~~~-~~~~~~~~~~lylfNPl~I~~s~~gs~~~~~~~~vl~~l~~~~~~~--------- 180 (463)
++-+.+.=.+..+=..|++++.+. ++..+...+..|++||.++.+-.+-|.|.+..++.=+.+.-..++.
T Consensus 77 RLWwallL~vaf~G~~rLa~~L~igs~~~r~~Aa~~YaLsPr~Lttlg~iSse~lP~al~PWvLlPlv~~~r~~~~~rr~ 156 (680)
T PF11847_consen 77 RLWWALLLTVAFWGALRLARALGIGSPASRVLAAVAYALSPRVLTTLGAISSETLPMALAPWVLLPLVRALRGRGSPRRA 156 (680)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhccCcchhHH
Confidence 344444445555666677776642 3334556788899999999986666899999888755555554332
Q ss_pred hHHHHHHHHH--HHHhhhhhHHHHHHHHHHhcc
Q 012470 181 VLQAAFWYGL--VVHFRIYPIIYVLPIILILDP 211 (463)
Q Consensus 181 ~~la~i~lal--av~~klYPiill~plll~l~~ 211 (463)
...|++..++ ++...--...+++|.+.++.+
T Consensus 157 aa~salaV~~mGaVNA~atlaa~l~~~l~ll~~ 189 (680)
T PF11847_consen 157 AARSALAVALMGAVNAVATLAALLPAGLWLLFR 189 (680)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhhhheeee
Confidence 2345555554 344444455666666666544
No 31
>KOG2576 consensus Glucosyltransferase - Alg8p [Transcription]
Probab=64.80 E-value=39 Score=35.97 Aligned_cols=99 Identities=16% Similarity=0.159 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHH---HhhcCCCccchhhhHHhhhhcchhhhhhcCC-CcchHHHHHHHHHHHHHHhCChHHHHHHHH
Q 012470 114 FSASDLLVGVFIHSI---LKLRKVPEDLCMYSAVVWLFNPFTFTIGTRG-NCEPIVCAMILWIIICLLKGNVLQAAFWYG 189 (463)
Q Consensus 114 f~~~Dll~a~ll~~i---~~~~~~~~~~~~~~~~lylfNPl~I~~s~~g-s~~~~~~~~vl~~l~~~~~~~~~la~i~la 189 (463)
-+++|++-.+.++|. .++.+.+++.....+..-+.||=.+..--.+ .-.++.-...++++.++.++|..++|+.++
T Consensus 105 VIf~dll~~~~~rr~~~l~~kl~k~~~~~~~~a~ll~~s~gLlIvDhIHFQYNgfLfgilLlSI~~l~~kr~l~~A~~fs 184 (500)
T KOG2576|consen 105 VIFSDLLLLYGLRRSYRLTSKLGKDQKQRFACAVLLLLSPGLLIVDHIHFQYNGFLFGILLLSIVFLKTKRYLLSAFLFS 184 (500)
T ss_pred hHHHHHHHHHHHhhhhcccccCCcccccchHHHHHHHhCCCcEEEEEeeeecccHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 356787766665433 2333333444444555578899766654333 677888888899999999999999999999
Q ss_pred HHHHhhhhhHHHHHHHHHHhccc
Q 012470 190 LVVHFRIYPIIYVLPIILILDPL 212 (463)
Q Consensus 190 lav~~klYPiill~plll~l~~~ 212 (463)
...++|=.=+.+.|...+++.|.
T Consensus 185 vll~FKHIflY~ApaY~vylLr~ 207 (500)
T KOG2576|consen 185 VLLNFKHIFLYVAPAYFVYLLRN 207 (500)
T ss_pred HHHhhhhheeeechhHHHHHHHH
Confidence 99999966566666666666554
No 32
>PF14264 Glucos_trans_II: Glucosyl transferase GtrII
Probab=44.75 E-value=3.4e+02 Score=27.21 Aligned_cols=101 Identities=11% Similarity=0.141 Sum_probs=60.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhhHHhhhhcchhhhhhcCC-Ccc--hHHHHHHHHHHHHHHhCChH-
Q 012470 107 RSWGKFLFSASDLLVGVFIHSILKLRKVPEDLCMYSAVVWLFNPFTFTIGTRG-NCE--PIVCAMILWIIICLLKGNVL- 182 (463)
Q Consensus 107 p~~~kllf~~~Dll~a~ll~~i~~~~~~~~~~~~~~~~lylfNPl~I~~s~~g-s~~--~~~~~~vl~~l~~~~~~~~~- 182 (463)
|++..++-+++=.+++..+.+..+.++ +-...........||+..-.-.-+ .+. ++..++...+.+...|++..
T Consensus 49 ~pl~~iLs~~~la~s~~~~~~~~~~~~--~~~~~l~~~~~~~~P~~~~~lsy~~~s~~~~ls~~l~~la~~~~~k~~~~~ 126 (319)
T PF14264_consen 49 PPLPQILSILFLALSAVLLVRLFDIKS--SFISVLFSLLFISSPFFLENLSYRFDSLPMALSLLLAVLAFYFLKKSKIGF 126 (319)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCccc--hHHHHHHHHHHHHhHHHHHHHHHHHccHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 456666667777777777777764432 112345677899999998665432 222 33355556666666666542
Q ss_pred -HH--HHHHHHHHHhhhhhHHHHHHHHHHh
Q 012470 183 -QA--AFWYGLVVHFRIYPIIYVLPIILIL 209 (463)
Q Consensus 183 -la--~i~lalav~~klYPiill~plll~l 209 (463)
.+ .+.+++++|....++.....+...+
T Consensus 127 ~~~~~ll~~sl~~YQa~~~v~i~l~~~~~l 156 (319)
T PF14264_consen 127 LISILLLVLSLGIYQASINVFISLVLIILL 156 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23 3345667777777776555555444
No 33
>PF11028 DUF2723: Protein of unknown function (DUF2723); InterPro: IPR021280 This family is conserved in bacteria. The function is not known.
Probab=44.59 E-value=1.3e+02 Score=28.46 Aligned_cols=70 Identities=17% Similarity=0.255 Sum_probs=45.8
Q ss_pred hhHHhhhhcchhhhhhcCCCcchHHHHHHHHHHHHHHh---C-------C-hHHHHHHHHHHHHhhhhhHHHHHHHHHHh
Q 012470 141 YSAVVWLFNPFTFTIGTRGNCEPIVCAMILWIIICLLK---G-------N-VLQAAFWYGLVVHFRIYPIIYVLPIILIL 209 (463)
Q Consensus 141 ~~~~lylfNPl~I~~s~~gs~~~~~~~~vl~~l~~~~~---~-------~-~~la~i~lalav~~klYPiill~plll~l 209 (463)
..++.+.|+|-.-..++-.--=++.++++++.+|...| . | ..+.+.+.|++...-+--++.+|++.+..
T Consensus 87 v~al~fafS~sfW~~Av~aEVYal~~l~~al~~~l~l~w~~~~~~~~~~r~l~l~afl~GLs~g~H~~~ll~lP~~~~~~ 166 (178)
T PF11028_consen 87 VGALAFAFSDSFWFQAVEAEVYALSSLFTALLLWLLLKWEREADEPRSDRWLLLIAFLCGLSLGVHLLNLLALPAIALLY 166 (178)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667899999888776555555667777777776652 1 2 25677777777666666666666665544
Q ss_pred c
Q 012470 210 D 210 (463)
Q Consensus 210 ~ 210 (463)
.
T Consensus 167 ~ 167 (178)
T PF11028_consen 167 F 167 (178)
T ss_pred H
Confidence 3
No 34
>PF14897 EpsG: EpsG family
Probab=41.96 E-value=3.5e+02 Score=26.61 Aligned_cols=83 Identities=13% Similarity=0.201 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCccchhhhHHhhhhcchhhhhhcCCCcchHHHHHHHHHHHHHHhCChHHHH--HHHH
Q 012470 112 FLFSASDLLVGVFIHSILKLRKVPEDLCMYSAVVWLFNPFTFTIGTRGNCEPIVCAMILWIIICLLKGNVLQAA--FWYG 189 (463)
Q Consensus 112 llf~~~Dll~a~ll~~i~~~~~~~~~~~~~~~~lylfNPl~I~~s~~gs~~~~~~~~vl~~l~~~~~~~~~la~--i~la 189 (463)
....+...++...+....++..... .......+| +.+.....+..+--.++...+.+.++....++|+..+. +.+|
T Consensus 67 ~~~~i~~~i~~~~~~~~i~~~~~~~-~~~~~~~l~-~~~~~~~~~~~~iRq~~A~~~~~~a~~~~~~~k~~~~~~~~lla 144 (330)
T PF14897_consen 67 FFFFIISFISLFLFFFFIKKYSKNY-PIFLSLFLF-FSFFFFFYSFNQIRQSLAISFFLLALSYLYKKKWIKFILLVLLA 144 (330)
T ss_pred HHHHHHHHHHHHHHHHhHHHcccch-HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 3444445555555555555432111 122233334 44444443333333444555566667777788865544 4567
Q ss_pred HHHHhhh
Q 012470 190 LVVHFRI 196 (463)
Q Consensus 190 lav~~kl 196 (463)
...|.+.
T Consensus 145 ~~fH~Sa 151 (330)
T PF14897_consen 145 ILFHYSA 151 (330)
T ss_pred HHHHHHH
Confidence 7788776
No 35
>COG1287 Uncharacterized membrane protein, required for N-linked glycosylation [General function prediction only]
Probab=27.61 E-value=1e+03 Score=27.61 Aligned_cols=100 Identities=12% Similarity=0.159 Sum_probs=50.2
Q ss_pred cCC-cchhHhhHHHHHhCC-----CCCCCC----CCcccChhHHHHHhhhhh----hhhhhHHHHHHHHH----HHHHHH
Q 012470 63 TDV-DYLVFSDAASLMASG-----DSPYKR----TTYRYSPLLAFFLIPNSI----IHRSWGKFLFSASD----LLVGVF 124 (463)
Q Consensus 63 Tdi-d~~~~~dga~l~~~G-----~sPY~~----~~~~y~PLl~~ll~p~~~----~~p~~~kllf~~~D----ll~a~l 124 (463)
.+- +|..++..-.++++| .+||+. ...+++|+..+++..... ..|......+..++ .++++.
T Consensus 49 ~e~Dpyy~~r~~~~~l~~g~~~~~~~~~~~YP~G~~i~~~pl~~~l~~~~~~~~~~~~~~~~~~~~~~~PailG~L~vI~ 128 (773)
T COG1287 49 GEFDPYYHYRLIENLLKNGPPRDFFDPYDNYPPGSPIDFPPLFLYLTAALGLILGSIFPVSLETAALLFPAILGVLTVIP 128 (773)
T ss_pred CCCCcHHHHHHHHHHHHhCCCccCCChhhcCCCCCCCCCCchHHHHHHHHHHHHHccCchHHHHHHHHhhHHHhhHHHHH
Confidence 455 666666666667776 466653 456789999877643221 11211122222222 333344
Q ss_pred HHHHHhhcCCCccchhhhHHhhhhcchhhhhhcCCC--cch
Q 012470 125 IHSILKLRKVPEDLCMYSAVVWLFNPFTFTIGTRGN--CEP 163 (463)
Q Consensus 125 l~~i~~~~~~~~~~~~~~~~lylfNPl~I~~s~~gs--~~~ 163 (463)
.+.+.|+.. .++.....+.+..+-|--..-+..|. +|.
T Consensus 129 vYl~~r~i~-~~~~g~~aa~ll~~~p~~~~rt~~G~~d~~~ 168 (773)
T COG1287 129 VYLLGRRIL-GDKTGLLAALLLALAPGYLSRTVAGFYDTDM 168 (773)
T ss_pred HHHHHHHHh-cchhhHHHHHHHHHhhHHHHHhhcCccCCCc
Confidence 444444432 22233455666666665555555553 555
No 36
>COG1928 PMT1 Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=24.06 E-value=1.3e+02 Score=34.26 Aligned_cols=90 Identities=11% Similarity=0.099 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCccchhhhHHhhhhcchhhhhhcCCCcchHHHHHHHHHHHHHHhC---C-------
Q 012470 111 KFLFSASDLLVGVFIHSILKLRKVPEDLCMYSAVVWLFNPFTFTIGTRGNCEPIVCAMILWIIICLLKG---N------- 180 (463)
Q Consensus 111 kllf~~~Dll~a~ll~~i~~~~~~~~~~~~~~~~lylfNPl~I~~s~~gs~~~~~~~~vl~~l~~~~~~---~------- 180 (463)
+..=++.-.++.-+++.++|+-+.+.......+.+.++-=--+.++---.-|+...++++++.|++.+- +
T Consensus 113 R~f~A~lgsl~vpl~y~t~r~~~~s~l~~~l~~llv~~dn~~~t~sR~ILLDs~LlfF~~~~~y~~~r~~~~~p~s~~w~ 192 (699)
T COG1928 113 RFFNALLGSLTVPLVYLIARRIGYSRLVAALAGLLVAFDNSFVTESRFILLDSFLLFFIVAAAYCFLRFHRQQPFSRRWL 192 (699)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcchHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhChhhHHHH
Confidence 333445555666666777776554332233334444443333333322257888899999999988631 1
Q ss_pred --hHHHHHHHHHHHHhhhhhHH
Q 012470 181 --VLQAAFWYGLVVHFRIYPII 200 (463)
Q Consensus 181 --~~la~i~lalav~~klYPii 200 (463)
..++|+.+|+++..|.--++
T Consensus 193 ~~Ll~tGisLGcaiS~KwvGlf 214 (699)
T COG1928 193 KWLLLTGISLGCAISVKWVGLF 214 (699)
T ss_pred HHHHHhcceeeeEEEeeehhHH
Confidence 25788888888888877533
No 37
>COG4745 Predicted membrane-bound mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=23.00 E-value=1e+03 Score=26.17 Aligned_cols=131 Identities=15% Similarity=0.134 Sum_probs=80.8
Q ss_pred HHHHhCCCCCCCCCCcccChhHHHHHhhhh-------hhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhhHHhh
Q 012470 74 ASLMASGDSPYKRTTYRYSPLLAFFLIPNS-------IIHRSWGKFLFSASDLLVGVFIHSILKLRKVPEDLCMYSAVVW 146 (463)
Q Consensus 74 a~l~~~G~sPY~~~~~~y~PLl~~ll~p~~-------~~~p~~~kllf~~~Dll~a~ll~~i~~~~~~~~~~~~~~~~ly 146 (463)
.+++++|.--|+. .|| -|++.+...... .... ....++...=.+++|+..+-+++ +.-.+.+.+-
T Consensus 50 Lk~l~~Gaw~YrP-i~H-GPfL~hvn~avF~~lGasDataR-lvvAv~G~llpL~awL~R~rL~d-----~evlal~~LL 121 (556)
T COG4745 50 LKYLEQGAWSYRP-IYH-GPFLYHVNYAVFGLLGASDATAR-LVVAVTGVLLPLTAWLYRTRLGD-----KEVLALATLL 121 (556)
T ss_pred HHHHhcCcceecc-ccc-Cchhhhhhhhhhhhcccchhhhh-hhHHHhhhHHHHHHHHHHHhccc-----hHHHHHHHHH
Confidence 4677888766652 344 566665432111 0111 12234444455666666543322 1223466778
Q ss_pred hhcchhhhhhcCCCcchHHHHHHHHHHHHHHhC------C-hHHHHHHHHHHHHhh----hhhHHHHHHHHHHhccc
Q 012470 147 LFNPFTFTIGTRGNCEPIVCAMILWIIICLLKG------N-VLQAAFWYGLVVHFR----IYPIIYVLPIILILDPL 212 (463)
Q Consensus 147 lfNPl~I~~s~~gs~~~~~~~~vl~~l~~~~~~------~-~~la~i~lalav~~k----lYPiill~plll~l~~~ 212 (463)
.+||....-|=-.-.|.+..++.++++.++.|- + ...++..+|++.-.| +|++++.....+.++++
T Consensus 122 A~sPvlVYYSRFmR~Dl~la~ftl~aVg~~vR~lDt~R~~yL~~sA~~lalAftaKEnall~~~~f~ga~alv~d~~ 198 (556)
T COG4745 122 AFSPVLVYYSRFMRNDLLLAAFTLLAVGFAVRYLDTERFRYLYASAVSLALAFTAKENALLYVAAFLGASALVLDRR 198 (556)
T ss_pred hcChhhhhHHHHHhhhHHHHHHHHHHHHHHHHHhhcccccchhhhhhhhhhhhhhcccceeHHHHHhchhHHHHHhH
Confidence 999999887744468999999999999988742 1 247888888888888 77777776555555543
No 38
>KOG3359 consensus Dolichyl-phosphate-mannose:protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=21.67 E-value=1.3e+03 Score=26.75 Aligned_cols=50 Identities=8% Similarity=0.167 Sum_probs=38.6
Q ss_pred CcchHHHHHHHHHHHHHHhC-----C---------hHHHHHHHHHHHHhhhhhHHHHHHHHHHh
Q 012470 160 NCEPIVCAMILWIIICLLKG-----N---------VLQAAFWYGLVVHFRIYPIIYVLPIILIL 209 (463)
Q Consensus 160 s~~~~~~~~vl~~l~~~~~~-----~---------~~la~i~lalav~~klYPiill~plll~l 209 (463)
.-|++..++.++++|++.|- + ..+.|+++|+|+..|.--++-..-+.++.
T Consensus 172 LLDs~Llff~~~~~y~~~r~~~~~~~pfs~~W~~wL~~tGvsLgcaiSvK~vGlft~~~Vgl~~ 235 (723)
T KOG3359|consen 172 LLDSMLLFFMAAAVYCFVRFYTQRKRPFSLRWWKWLLLTGVSLGCAISVKYVGLFTIALVGLYT 235 (723)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhhheeehhhhhHHHHHHHHHHH
Confidence 57888899999999998742 2 26899999999999988776665554443
Done!