Query 012470
Match_columns 463
No_of_seqs 163 out of 512
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 10:04:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012470.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012470hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rce_A Oligosaccharide transfe 21.2 8.3E+02 0.028 26.6 27.7 154 35-191 22-192 (724)
2 2f8e_A VPG protein; RNA-depend 3.4 3.2E+02 0.011 16.6 0.5 13 83-95 2-14 (26)
3 2lco_A WALP19-P8 peptide; prol 3.1 4.1E+02 0.014 15.9 0.8 9 367-375 2-10 (26)
4 3rko_A NADH-quinone oxidoreduc 2.8 1.9E+03 0.064 18.7 5.2 19 108-126 69-87 (147)
5 2q67_A Potassium channel prote 2.7 1.9E+03 0.064 17.2 4.9 14 278-291 45-58 (114)
6 3vou_A ION transport 2 domain 2.6 2E+03 0.068 17.7 5.1 14 278-291 48-61 (148)
7 3ldc_A Calcium-gated potassium 2.6 1.5E+03 0.051 16.6 3.9 17 275-291 21-37 (82)
8 2nr1_A NR1 M2, M2; receptor, s 2.1 1.2E+03 0.043 14.3 2.1 13 397-409 9-21 (27)
9 3ro2_B Peptide of nuclear mito 2.0 6.8E+02 0.023 15.4 0.8 8 6-13 8-15 (28)
10 3so5_A LIG-3, leucine-rich rep 2.0 4.9E+02 0.017 18.9 0.2 18 3-20 1-18 (112)
No 1
>3rce_A Oligosaccharide transferase to N-glycosylate PROT; oligosaccharyltransferase, membrane protein, helical bundle, glycosylation, acceptor peptide, plasma membrane; HET: PPN; 3.40A {Campylobacter lari}
Probab=21.19 E-value=8.3e+02 Score=26.65 Aligned_cols=154 Identities=14% Similarity=0.144 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHh-Ccccc--cceeeeecCCcchhHhhHHHHHh-CCCCCCCCCCcccChhHHHHHhhhhhh----h
Q 012470 35 SLLWLSAIFRVILIVY-GEWQD--SHMEVRYTDVDYLVFSDAASLMA-SGDSPYKRTTYRYSPLLAFFLIPNSII----H 106 (463)
Q Consensus 35 ~~~~~a~~lRl~L~~~-~~~~d--~~~ev~yTdid~~~~~dga~l~~-~G~sPY~~~~~~y~PLl~~ll~p~~~~----~ 106 (463)
.+++.|+++|+.-... .+..+ ..-|+-++--|-...-++++-.. ++.+|-+.+++. |++.++....... .
T Consensus 22 ~~~~~sl~~R~~~~~w~~~~~~f~~~~~~~~~~~D~yy~~r~ar~~l~~~~~p~~~~p~g--~~~~~l~a~l~~i~g~sl 99 (724)
T 3rce_A 22 IAFAFSVLCRLYWVAWASEFYEFFFNDQLMITTNDGYAFAEGARDMIAGFHQPNDLSYFG--SSLSTLTYWLYSILPFSF 99 (724)
T ss_dssp HHHHHHHHHHTHHHHHHSSCGGGEETTEECCSCHHHHHHHHHHHHHHHSCCCTTSCCCTT--CHHHHHHHHHHHSCSSCH
T ss_pred HHHHHHHHHHHhhHHhhccCcceEECCEEeeccCCHHHHHHHHHHHHhcCCCCCCCCCCc--chHHHHHHHHHHHcCCCH
Confidence 4567788889874221 12111 01134444455444445555554 445666555443 3443332211110 1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcCCCccchhhhHHhhhhcchhhhhhcCC--CcchHHHHHHHHHHHHHH----hCC
Q 012470 107 RSWGKFLFSASDLLVGVFIHSILKLRKVPEDLCMYSAVVWLFNPFTFTIGTRG--NCEPIVCAMILWIIICLL----KGN 180 (463)
Q Consensus 107 p~~~kllf~~~Dll~a~ll~~i~~~~~~~~~~~~~~~~lylfNPl~I~~s~~g--s~~~~~~~~vl~~l~~~~----~~~ 180 (463)
...+..+=.++..+++...+-+.|+.+ .++.....+++-.+.|--+.-+..| .+|++..++.++++|++. +++
T Consensus 100 ~~v~~~lp~ifg~L~vi~~yll~~el~-~~~aGl~AAll~ai~P~~i~RS~aG~~D~e~l~i~~~ll~~~~~i~alk~~~ 178 (724)
T 3rce_A 100 ESIILYMSTFFASLIVVPIILIAREYK-LTTYGFIAALLGSIANSYYNRTMSGYYDTDMLVLVLPMLILLTFIRLTINKD 178 (724)
T ss_dssp HHHHHHHHHHHGGGGHHHHHHHHHHTT-CHHHHHHHHHHHTTSHHHHHTSSTTCCSGGGGTTHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc-CchHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHcCC
Confidence 122222223333444444444444432 1223445677789999988888887 477788887777777775 333
Q ss_pred h---HHHHHHHHHH
Q 012470 181 V---LQAAFWYGLV 191 (463)
Q Consensus 181 ~---~la~i~lala 191 (463)
. .+||+++|+.
T Consensus 179 ~~~~~lagl~~~ly 192 (724)
T 3rce_A 179 IFTLLLSPIFIMIY 192 (724)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 2 4566666543
No 2
>2f8e_A VPG protein; RNA-dependent RNA polymerase , protein primer, transferase; HET: U5P; 2.90A {Foot-and-mouth disease virus - type C} PDB: 2d7s_B
Probab=3.37 E-value=3.2e+02 Score=16.63 Aligned_cols=13 Identities=38% Similarity=0.575 Sum_probs=9.1
Q ss_pred CCCCCCcccChhH
Q 012470 83 PYKRTTYRYSPLL 95 (463)
Q Consensus 83 PY~~~~~~y~PLl 95 (463)
||.|..-|+-||=
T Consensus 2 pyagplerq~plk 14 (26)
T 2f8e_A 2 PYAGPLERQRPLK 14 (26)
T ss_pred CcCCchhhcCcce
Confidence 7777777777763
No 3
>2lco_A WALP19-P8 peptide; proline distortion, transmembrane, membrane protein; HET: ETA; NMR {Synthetic}
Probab=3.07 E-value=4.1e+02 Score=15.94 Aligned_cols=9 Identities=33% Similarity=0.970 Sum_probs=6.7
Q ss_pred HHHHHhhhh
Q 012470 367 VWFFCLLPL 375 (463)
Q Consensus 367 ~wyl~LLpL 375 (463)
+|++++.|-
T Consensus 2 gwwlalapa 10 (26)
T 2lco_A 2 GWWLALAPA 10 (26)
T ss_pred chHHHHhHH
Confidence 588888774
No 4
>3rko_A NADH-quinone oxidoreductase subunit A; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=2.80 E-value=1.9e+03 Score=18.69 Aligned_cols=19 Identities=11% Similarity=0.006 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 012470 108 SWGKFLFSASDLLVGVFIH 126 (463)
Q Consensus 108 ~~~kllf~~~Dll~a~ll~ 126 (463)
-...++|.++|+=++.++-
T Consensus 69 fLiAilFlIFDvEi~~L~P 87 (147)
T 3rko_A 69 YLVAMFFVIFDVEALYLFA 87 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3567899999998887663
No 5
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=2.71 E-value=1.9e+03 Score=17.23 Aligned_cols=14 Identities=7% Similarity=0.043 Sum_probs=8.9
Q ss_pred HhchHHHHHhhhhe
Q 012470 278 LYGWEFLHEALLYH 291 (463)
Q Consensus 278 ~~Gw~Fl~~tY~~~ 291 (463)
..||+|.+.-|...
T Consensus 45 ~e~~~~~~a~y~~~ 58 (114)
T 2q67_A 45 VEGLRPIDALYFSV 58 (114)
T ss_dssp HSCCCHHHHHHHHH
T ss_pred hcCCCHHHHHHHHH
Confidence 45687777755544
No 6
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=2.58 E-value=2e+03 Score=17.75 Aligned_cols=14 Identities=14% Similarity=0.071 Sum_probs=8.4
Q ss_pred HhchHHHHHhhhhe
Q 012470 278 LYGWEFLHEALLYH 291 (463)
Q Consensus 278 ~~Gw~Fl~~tY~~~ 291 (463)
..||+|.+.-|...
T Consensus 48 ~e~~~~~~a~y~~~ 61 (148)
T 3vou_A 48 VEGLRPLDALYFSV 61 (148)
T ss_dssp TSCCCHHHHHHHHH
T ss_pred hcCCCHHHHHHHHH
Confidence 34688877754443
No 7
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=2.57 E-value=1.5e+03 Score=16.65 Aligned_cols=17 Identities=12% Similarity=0.221 Sum_probs=10.6
Q ss_pred HHHHhchHHHHHhhhhe
Q 012470 275 FFYLYGWEFLHEALLYH 291 (463)
Q Consensus 275 ~y~~~Gw~Fl~~tY~~~ 291 (463)
.+...+|+|.+.-|...
T Consensus 21 ~~~~e~~~~~~a~yf~~ 37 (82)
T 3ldc_A 21 FHFIEGESWTVSLYWTF 37 (82)
T ss_dssp HHHHHCCCHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHH
Confidence 34556788887755443
No 8
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=2.13 E-value=1.2e+03 Score=14.34 Aligned_cols=13 Identities=38% Similarity=0.945 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHH
Q 012470 397 GAQLHWLMWGYLL 409 (463)
Q Consensus 397 l~~~~wl~w~y~l 409 (463)
++..+|..|...|
T Consensus 9 l~aa~wF~WGvll 21 (27)
T 2nr1_A 9 LSSAMWFSWGVLL 21 (27)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhhhHHHhhHhhe
Confidence 3456777777653
No 9
>3ro2_B Peptide of nuclear mitotic apparatus protein 1; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Homo sapiens}
Probab=2.02 E-value=6.8e+02 Score=15.39 Aligned_cols=8 Identities=38% Similarity=0.870 Sum_probs=5.4
Q ss_pred CCCCCCCc
Q 012470 6 FCDAEPAP 13 (463)
Q Consensus 6 ~~~~~~~~ 13 (463)
-|..||.+
T Consensus 8 tcqdepeq 15 (28)
T 3ro2_B 8 TCQDEPEQ 15 (28)
T ss_dssp SCCCCCCC
T ss_pred cccCCccc
Confidence 47777765
No 10
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Probab=2.02 E-value=4.9e+02 Score=18.90 Aligned_cols=18 Identities=28% Similarity=0.604 Sum_probs=7.3
Q ss_pred CCCCCCCCCCccccCcch
Q 012470 3 KSHFCDAEPAPAFSNLPS 20 (463)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~ 20 (463)
|+..||..|+|.+..-|.
T Consensus 1 ~~~~c~~~~~P~i~~~p~ 18 (112)
T 3so5_A 1 XGFVCDDFPXPQITVQPE 18 (112)
T ss_dssp -------CCSCEEEECCC
T ss_pred CceecCCCCCCeEEeCCC
Confidence 355688777777765553
Done!