Query 012470
Match_columns 463
No_of_seqs 163 out of 512
Neff 6.3
Searched_HMMs 13730
Date Mon Mar 25 10:04:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012470.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012470hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1rzhh2 f.23.10.1 (H:11-35) Ph 7.5 1.2E+02 0.0088 17.1 2.0 12 397-408 3-14 (26)
2 d3ehbb2 f.17.2.1 (B:1-107) Bac 3.0 7.2E+02 0.052 17.8 4.6 24 420-443 39-62 (107)
3 d1bd8a_ d.211.1.1 (A:) Cell cy 2.5 5.4E+02 0.04 18.6 3.5 28 72-99 115-142 (156)
4 d1e2ya_ c.47.1.10 (A:) Trypare 2.5 1.7E+02 0.012 22.9 0.1 18 9-26 6-31 (167)
5 d1d2zb_ a.77.1.2 (B:) Tube dea 2.3 1.6E+02 0.011 23.8 -0.4 28 57-84 61-88 (150)
6 d1uula_ c.47.1.10 (A:) Trypare 2.2 2.4E+02 0.018 22.9 0.7 20 8-27 5-32 (194)
7 d3dtub2 f.17.2.1 (B:30-129) Ba 2.0 1.1E+03 0.079 16.3 4.8 23 420-442 33-55 (100)
8 d1bi7b_ d.211.1.1 (B:) Cell cy 2.0 5E+02 0.036 18.4 2.3 22 75-96 21-42 (125)
9 d1eysh2 f.23.10.1 (H:7-43) Pho 1.9 3.8E+02 0.028 16.3 1.1 11 290-300 22-32 (37)
10 d1ihba_ d.211.1.1 (A:) p18ink4 1.9 4.9E+02 0.036 18.5 2.1 22 75-96 19-40 (156)
No 1
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=7.51 E-value=1.2e+02 Score=17.05 Aligned_cols=12 Identities=17% Similarity=0.529 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHH
Q 012470 397 GAQLHWLMWGYL 408 (463)
Q Consensus 397 l~~~~wl~w~y~ 408 (463)
++-..|++|++.
T Consensus 3 aslaiw~fw~ff 14 (26)
T d1rzhh2 3 ASLAIYSFWIFL 14 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344667777663
No 2
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=2.98 E-value=7.2e+02 Score=17.81 Aligned_cols=24 Identities=17% Similarity=0.215 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Q 012470 420 LWLAGLLFLAANTFVLIMITCRHT 443 (463)
Q Consensus 420 ~~~~sLvf~~~~~~ll~~~i~~~~ 443 (463)
++.++.++......++.-+++.++
T Consensus 39 ~~i~~~I~~~V~~~~~~~~~~~r~ 62 (107)
T d3ehbb2 39 LYIITAVTIFVCLLLLICIVRFNR 62 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSBT
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhc
Confidence 556666666666655555555443
No 3
>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.54 E-value=5.4e+02 Score=18.57 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=20.5
Q ss_pred hHHHHHhCCCCCCCCCCcccChhHHHHH
Q 012470 72 DAASLMASGDSPYKRTTYRYSPLLAFFL 99 (463)
Q Consensus 72 dga~l~~~G~sPY~~~~~~y~PLl~~ll 99 (463)
|.++++.+|.|+...+...+|||-....
T Consensus 115 ~i~~~L~~~~~~~~~d~~G~TpL~~A~~ 142 (156)
T d1bd8a_ 115 AVVSFLAAESDLHRRDARGLTPLELALQ 142 (156)
T ss_dssp HHHHHHHTTSCTTCCCTTSCCHHHHHHH
T ss_pred cccccccccccccccCCCCCCHHHHHHH
Confidence 4556777888888888888888866543
No 4
>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}
Probab=2.52 E-value=1.7e+02 Score=22.87 Aligned_cols=18 Identities=44% Similarity=0.726 Sum_probs=13.2
Q ss_pred CCCCcccc--------CcchhhHHHH
Q 012470 9 AEPAPAFS--------NLPSVSLSQL 26 (463)
Q Consensus 9 ~~~~~~~~--------~~~~~~~~~~ 26 (463)
.+|||.|+ +--.|||+.+
T Consensus 6 G~~APdF~~~~~l~d~~g~~vsLsd~ 31 (167)
T d1e2ya_ 6 NHPAPEFDDMALMPNGTFKKVSLSSY 31 (167)
T ss_dssp TSBCCCCEEEEECSSSCEEEEEGGGG
T ss_pred CCCCCCCcccccccCCCCcEEeHHHH
Confidence 47999997 3335888886
No 5
>d1d2zb_ a.77.1.2 (B:) Tube death domain {Drosophila melanogaster [TaxId: 7227]}
Probab=2.30 E-value=1.6e+02 Score=23.83 Aligned_cols=28 Identities=21% Similarity=0.307 Sum_probs=23.1
Q ss_pred ceeeeecCCcchhHhhHHHHHhCCCCCC
Q 012470 57 HMEVRYTDVDYLVFSDAASLMASGDSPY 84 (463)
Q Consensus 57 ~~ev~yTdid~~~~~dga~l~~~G~sPY 84 (463)
..+.+||..|.+++...+..+..|.||=
T Consensus 61 n~~~kY~~~hi~~ie~~a~~~~~~~S~t 88 (150)
T d1d2zb_ 61 KKGFKYTAQDVFQIDEAANRLPPDQSKS 88 (150)
T ss_dssp GGCBSSCHHHHHHHHHHHHHSCTTCCHH
T ss_pred CCCccccHHHHHHHHHHHhhccCCCChH
Confidence 5677899999999877778888998874
No 6
>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}
Probab=2.16 E-value=2.4e+02 Score=22.95 Aligned_cols=20 Identities=40% Similarity=0.786 Sum_probs=14.5
Q ss_pred CCCCCcccc---Ccch-----hhHHHHH
Q 012470 8 DAEPAPAFS---NLPS-----VSLSQLA 27 (463)
Q Consensus 8 ~~~~~~~~~---~~~~-----~~~~~~~ 27 (463)
|..|||.|+ -+|. ++|++++
T Consensus 5 ~~~PAPdFtl~a~l~d~~g~~vsLsd~~ 32 (194)
T d1uula_ 5 DLHPAPDFNETALMPNGTFKKVALTSYK 32 (194)
T ss_dssp TTSBCCCCEEEEECTTSCEEEEEGGGGT
T ss_pred cCCCCCCCcccccccCCCCcEEehHHhC
Confidence 456999998 2453 8888875
No 7
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=2.01 E-value=1.1e+03 Score=16.32 Aligned_cols=23 Identities=13% Similarity=0.161 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q 012470 420 LWLAGLLFLAANTFVLIMITCRH 442 (463)
Q Consensus 420 ~~~~sLvf~~~~~~ll~~~i~~~ 442 (463)
++.+..++..+...++.-+.+.+
T Consensus 33 ~~i~~~I~~~V~~~l~~~~~~~r 55 (100)
T d3dtub2 33 LVIIAAITIFVTLLILYAVWRFH 55 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHHHHHHHHhhhhh
Confidence 45555566555555555555444
No 8
>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.95 E-value=5e+02 Score=18.38 Aligned_cols=22 Identities=23% Similarity=0.558 Sum_probs=17.7
Q ss_pred HHHhCCCCCCCCCCcccChhHH
Q 012470 75 SLMASGDSPYKRTTYRYSPLLA 96 (463)
Q Consensus 75 ~l~~~G~sPY~~~~~~y~PLl~ 96 (463)
.++++|.||-..+....+|+-+
T Consensus 21 ~Ll~~gad~n~~~~~g~t~l~~ 42 (125)
T d1bi7b_ 21 ALLEAGANPNAPNSYGRRPIQV 42 (125)
T ss_dssp HHHTTTCCTTCCCSSSCCTTTS
T ss_pred HHHHcCCccccccccccccccc
Confidence 4778999998888888888753
No 9
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=1.93 E-value=3.8e+02 Score=16.29 Aligned_cols=11 Identities=36% Similarity=0.458 Sum_probs=5.9
Q ss_pred heeeecCCCCC
Q 012470 290 YHLTRTDPRHN 300 (463)
Q Consensus 290 ~~l~~~D~rpN 300 (463)
+.+.|+|.|..
T Consensus 22 ~YL~rE~~REG 32 (37)
T d1eysh2 22 IYLRREDKREG 32 (37)
T ss_dssp HHHHHHTTSSS
T ss_pred HHHHhcccccC
Confidence 34556666654
No 10
>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.86 E-value=4.9e+02 Score=18.53 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=18.0
Q ss_pred HHHhCCCCCCCCCCcccChhHH
Q 012470 75 SLMASGDSPYKRTTYRYSPLLA 96 (463)
Q Consensus 75 ~l~~~G~sPY~~~~~~y~PLl~ 96 (463)
.++++|.||-..+..-.|||-+
T Consensus 19 ~Ll~~g~d~n~~d~~g~TpL~~ 40 (156)
T d1ihba_ 19 SLLQNNVNVNAQNGFGRTALQV 40 (156)
T ss_dssp HHTTSCCCTTCCCTTSCCHHHH
T ss_pred HHHHCCCCcCccCCcccccccc
Confidence 4678999998888888899864
Done!