Query 012472
Match_columns 463
No_of_seqs 490 out of 1302
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 10:06:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012472.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012472hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 3.7E-46 1.3E-50 360.2 35.7 403 27-444 51-483 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 6.8E-38 2.3E-42 299.1 15.0 370 20-424 52-433 (451)
3 3o7q_A L-fucose-proton symport 100.0 2.6E-35 8.7E-40 280.2 24.9 346 21-419 51-427 (438)
4 4aps_A DI-OR tripeptide H+ sym 100.0 2.5E-32 8.6E-37 263.4 26.3 392 23-427 46-475 (491)
5 2gfp_A EMRD, multidrug resista 100.0 6.1E-33 2.1E-37 258.1 10.4 336 22-412 26-364 (375)
6 2cfq_A Lactose permease; trans 100.0 8.1E-29 2.8E-33 233.2 12.3 362 22-430 34-406 (417)
7 2xut_A Proton/peptide symporte 100.0 2.9E-28 9.8E-33 236.9 15.8 142 28-172 51-197 (524)
8 1pw4_A Glycerol-3-phosphate tr 99.5 2E-13 6.8E-18 129.7 10.5 183 235-429 28-212 (451)
9 3o7q_A L-fucose-proton symport 99.4 5.5E-12 1.9E-16 119.2 17.5 154 237-402 28-182 (438)
10 2xut_A Proton/peptide symporte 99.4 1.5E-11 5.2E-16 119.1 16.8 165 244-423 21-197 (524)
11 2gfp_A EMRD, multidrug resista 99.3 3.7E-12 1.3E-16 117.7 11.5 170 244-428 9-179 (375)
12 4aps_A DI-OR tripeptide H+ sym 99.3 1.9E-11 6.4E-16 117.4 14.7 170 237-421 15-193 (491)
13 2cfq_A Lactose permease; trans 99.3 6.5E-12 2.2E-16 117.8 7.6 146 29-177 257-404 (417)
14 4gc0_A D-xylose-proton symport 99.1 6.2E-10 2.1E-14 106.8 11.5 150 27-177 308-467 (491)
15 2g9p_A Antimicrobial peptide l 61.4 4.6 0.00016 18.8 1.4 14 50-63 2-15 (26)
16 4dve_A Biotin transporter BIOY 27.9 1.4E+02 0.0047 23.8 6.0 25 37-61 99-123 (198)
17 2b6o_A Aquaporin-0, lens fiber 25.6 89 0.003 26.3 4.8 29 404-432 202-230 (263)
18 3arc_T Photosystem II reaction 23.7 76 0.0026 16.5 2.4 11 168-178 18-28 (32)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=3.7e-46 Score=360.18 Aligned_cols=403 Identities=25% Similarity=0.459 Sum_probs=320.2
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhh------------------hhhhHHHHH
Q 012472 27 KFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGG------------------SAFNIYMLI 88 (463)
Q Consensus 27 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~------------------~~~~~~~l~ 88 (463)
+.++.+.|++.+++.+|..+|++++|+++||+|||++++++.+++.+++++++ +++|++.++
T Consensus 51 ~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~ 130 (491)
T 4gc0_A 51 SAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFV 130 (491)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHH
Confidence 44667889999999999999999999999999999999999999999999998 478999999
Q ss_pred HHHHHhhcccccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCC-----cchhHHHHHhhHHHH
Q 012472 89 FGRLLLGVGIGFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKG-----GWGWRISLAMAAAPA 163 (463)
Q Consensus 89 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-----~~gwr~~f~~~~~~~ 163 (463)
++|+++|+|.|+..+....+++|+.|+++|++..+..+.+..+|.++++.++.......+ ..+||+.+.+..++.
T Consensus 131 ~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (491)
T 4gc0_A 131 IYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPA 210 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhh
Confidence 999999999999999999999999999999999999999999999999988876654322 357999999999999
Q ss_pred HHHHHHhhcCCCChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHH
Q 012472 164 SILTIGAIFLPETPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIP 243 (463)
Q Consensus 164 ~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (463)
++..+..+++||+|+|+..+++ .+++++.+++.+..+..+++..+..+....+++.... .. ....++........
T Consensus 211 ~~~~~~~~~~peSp~~L~~~~~-~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~ 285 (491)
T 4gc0_A 211 LLFLMLLYTVPESPRWLMSRGK-QEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTGGR-LL---MFGVGVIVIGVMLS 285 (491)
T ss_dssp HHHHHHGGGSCCCHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTH-HH---HSCCTHHHHHHHHH
T ss_pred hhhhhhhhcCCCChHHHHHcCc-hhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhhhH-HH---HhcccHHHHHHHHH
Confidence 9988888999999999999888 7777777777765544433333332222222211111 11 12234455556666
Q ss_pred HHHhhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHH
Q 012472 244 FFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMA 323 (463)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 323 (463)
.+....+.+.+..|.+.+.+..+.+..... ......++..+++.++++++.||+|||+.+..+...+.++.+.+.....
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~ 364 (491)
T 4gc0_A 286 IFQQFVGINVVLYYAPEVFKTLGASTDIAL-LQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY 364 (491)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSSCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHhcchHHHHhcCCCccchh-hHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHh
Confidence 677777888888999999988887776666 6777788899999999999999999999999888888887776655432
Q ss_pred hhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcc--
Q 012472 324 AQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHF-- 401 (463)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~-- 401 (463)
. ....+..+....++..++..++.|+.+.+.+|++|++.|+++.|+.+..+++++++++.+++.+.+..
T Consensus 365 ~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~ 435 (491)
T 4gc0_A 365 T---------QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWL 435 (491)
T ss_dssp T---------TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHH
T ss_pred c---------ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 12234445555566666677777888899999999999999999999999999999998887765432
Q ss_pred ----c-chhHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhcCcc
Q 012472 402 ----K-AGIFFFFGGLVLIMTTFMHFFLPETKNVPIEQMDKVWREHWF 444 (463)
Q Consensus 402 ----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (463)
+ ...++++++++++..++.++++||||++++||+|+.++++.+
T Consensus 436 ~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~~~~~ 483 (491)
T 4gc0_A 436 VAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEALWEPETK 483 (491)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC----
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhCCCCc
Confidence 2 345677788888888888899999999999999988765543
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=6.8e-38 Score=299.11 Aligned_cols=370 Identities=15% Similarity=0.046 Sum_probs=268.9
Q ss_pred CccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhh----hhhHHHHHHHHHHhh
Q 012472 20 TKVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGS----AFNIYMLIFGRLLLG 95 (463)
Q Consensus 20 ~~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~----~~~~~~l~~~r~l~G 95 (463)
+.+.+++ .+..+.+++.+++.++..++++++|+++||+|||++++++.++.+++.+++++ +++++.++++|+++|
T Consensus 52 ~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G 130 (451)
T 1pw4_A 52 PYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCG 130 (451)
T ss_dssp HHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHH
T ss_pred HHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHH
Confidence 3456777 89999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred cccccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcch-hHHHHHhhHHHHHHHHHHh-hcC
Q 012472 96 VGIGFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWG-WRISLAMAAAPASILTIGA-IFL 173 (463)
Q Consensus 96 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~g-wr~~f~~~~~~~~~~~~~~-~~~ 173 (463)
++.+...+...+++.|++|+++|++++++.+.+..+|.++++.+++.+.+. .| ||+.|++.++++++..+.. +++
T Consensus 131 ~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~g~w~~~f~~~~~~~~~~~~~~~~~~ 207 (451)
T 1pw4_A 131 WFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAW---FNDWHAALYMPAFCAILVALFAFAMM 207 (451)
T ss_dssp HHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHH---TCCSTTCTHHHHHHHHHHHHHHHHHC
T ss_pred HHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999998765432 46 9999999998887766555 458
Q ss_pred CCChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhh-hcccchhhHHHHHHHHHHHhhhhhh
Q 012472 174 PETPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNI-AQRKYRPQLVMAILIPFFQQVTGIN 252 (463)
Q Consensus 174 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (463)
||+|++...++.++.+. . .+. +. ++ +++.+.+.++. .+...+++.++...+..+.......
T Consensus 208 ~~~~~~~~~~~~~~~~~---------~--~~~---~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (451)
T 1pw4_A 208 RDTPQSCGLPPIEEYKN---------D--YPD---DY-NE---KAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRY 269 (451)
T ss_dssp CCSSTTTCCCSCTTTCC---------C----------------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHhhcCCCChhhhcc---------c--ccc---cc-hh---hhhcccccccchHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence 88875432111100000 0 000 00 00 00011112221 1222233444445555555556677
Q ss_pred HHHhhHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhc--CCchhhhHhhHHHH-HHHHHHHHHHHhhhCC
Q 012472 253 IVGLYSPVLFRT-LKLGESTSLLLSALVAGGMGTVFAIVSMILADKF--GRKVLFLVGGIQML-VSQVMIGSIMAAQLGD 328 (463)
Q Consensus 253 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 328 (463)
....+.|.++++ .+.+....+ .......++.+++.++.+++.||+ +||+.+..+..+.. ++.+.+...
T Consensus 270 ~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 341 (451)
T 1pw4_A 270 GILDWSPTYLKEVKHFALDKSS-WAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN------- 341 (451)
T ss_dssp HHHHHHHHHBTTBSCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC-------
T ss_pred HHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh-------
Confidence 788899999887 677776666 788888999999999999999999 99988777665555 333322211
Q ss_pred CCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHH-HHHHHHhhhhhhhhcccchhHH
Q 012472 329 HGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFL-FTFLTAQTFLPMLCHFKAGIFF 407 (463)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~ 407 (463)
+..+.+.......+.+.+.... .+....+..|.+|++.|+++.|+.+...++ |..++|.+.|.+.+..++...+
T Consensus 342 ----~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~ 416 (451)
T 1pw4_A 342 ----PAGNPTVDMICMIVIGFLIYGP-VMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGF 416 (451)
T ss_dssp ----CTTCHHHHHHHHHHHHHHHTHH-HHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHH
T ss_pred ----cccCHHHHHHHHHHHHHHHhch-HHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 1112333444444444433322 344456778999999999999999999999 9999999999999998866655
Q ss_pred HHHHHHHHHHHHHHHhc
Q 012472 408 FFGGLVLIMTTFMHFFL 424 (463)
Q Consensus 408 ~~~~~~~~~~~~~~~~~ 424 (463)
...+++.+++.+.....
T Consensus 417 ~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 417 MVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555544444444443
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=2.6e-35 Score=280.16 Aligned_cols=346 Identities=10% Similarity=0.058 Sum_probs=258.2
Q ss_pred ccCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhh---hhhhhHHHHHHHHHHhhcc
Q 012472 21 KVGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALG---GSAFNIYMLIFGRLLLGVG 97 (463)
Q Consensus 21 ~~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~---~~~~~~~~l~~~r~l~G~~ 97 (463)
.+++++|++..+.+++.+.+.+++.++++++|+++||+|||++++.+.++.+++.+++ +++++++.++++|+++|++
T Consensus 51 ~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~ 130 (438)
T 3o7q_A 51 QFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAG 130 (438)
T ss_dssp HHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhh
Confidence 3567789999999999999999999999999999999999999999999999999999 8889999999999999999
Q ss_pred cccccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhc-ccCCc----------------------chhHH
Q 012472 98 IGFGNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQ-KIKGG----------------------WGWRI 154 (463)
Q Consensus 98 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~-~~~~~----------------------~gwr~ 154 (463)
.+...+...+++.|++|+++|++++++.+.+.++|.++++.++..+. ...+. .+||+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~ 210 (438)
T 3o7q_A 131 LGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQT 210 (438)
T ss_dssp HHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHH
Confidence 99999999999999999999999999999999999999999988876 43321 01999
Q ss_pred HHHhhHHHHHHHHHHhhc--CCCChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccc
Q 012472 155 SLAMAAAPASILTIGAIF--LPETPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKY 232 (463)
Q Consensus 155 ~f~~~~~~~~~~~~~~~~--~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (463)
.|++.++..++..+..++ .||+++...++++ +++.+.+++++++++
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~- 258 (438)
T 3o7q_A 211 PYMIIVAIVLLVALLIMLTKFPALQSDNHSDAK-------------------------------QGSFSASLSRLARIR- 258 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCCTTTCCCCSS-------------------------------TTSHHHHHHHHTTCS-
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccccccccc-------------------------------ccchhhhHHHHHhCh-
Confidence 998877776665555443 5665421000000 001112233333322
Q ss_pred hhhHHHHHHHHHHHhhhhhhHHHhhHHHH-HHHc-CCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHH
Q 012472 233 RPQLVMAILIPFFQQVTGINIVGLYSPVL-FRTL-KLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQ 310 (463)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 310 (463)
.++...+..+...........+.|.+ +++. +.+....+ .......++.+++.++.+++.||++||+.+..+..+
T Consensus 259 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~ 334 (438)
T 3o7q_A 259 ---HWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAA-NYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALI 334 (438)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHH-HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 23333344444445566777888888 8776 77776666 788888899999999999999999999999888877
Q ss_pred HHHHHHHHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHH
Q 012472 311 MLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLT 390 (463)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~ 390 (463)
..++.+++... +..+. .....+.+.+.+.. .|..+.+..|.+|++ ++.+.++.. .+.+++.++
T Consensus 335 ~~~~~~~~~~~-------------~~~~~-~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~ 397 (438)
T 3o7q_A 335 AMALCLISAFA-------------GGHVG-LIALTLCSAFMSIQ-YPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIV 397 (438)
T ss_dssp HHHHHHHHHHC-------------CHHHH-HHHHHHHHHHHTTH-HHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHH
T ss_pred HHHHHHHHHHc-------------CCcHH-HHHHHHHHHHHHHH-HHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHH
Confidence 77666554432 11222 22333444443333 456667767888866 888888877 677999999
Q ss_pred Hhhhhhhhhccc-chhHHHHHHHHHHHHHH
Q 012472 391 AQTFLPMLCHFK-AGIFFFFGGLVLIMTTF 419 (463)
Q Consensus 391 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 419 (463)
|.+.|.+.+..+ +...+...+++.+...+
T Consensus 398 ~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~ 427 (438)
T 3o7q_A 398 TPVMGFVSDAAGNIPTAELIPALCFAVIFI 427 (438)
T ss_dssp HHHHHHHHHHHTSSGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 999999999987 65555554444444333
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=2.5e-32 Score=263.37 Aligned_cols=392 Identities=14% Similarity=0.080 Sum_probs=251.1
Q ss_pred CCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhh-hcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccccc
Q 012472 23 GNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRA-LGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFG 101 (463)
Q Consensus 23 ~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr-~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 101 (463)
++|+|++..+.+++.+.+.++..++++++|+++|| +|||+++..+.++.+++.+++++++|++.++++|+++|++.+..
T Consensus 46 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 125 (491)
T 4aps_A 46 TGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFL 125 (491)
T ss_dssp HTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhc
Confidence 45689999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred cchhhHHhhhcCCCCc--ccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhcC-CCChH
Q 012472 102 NQSVPLYLSEMAPPKY--RGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFL-PETPN 178 (463)
Q Consensus 102 ~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~-~e~~~ 178 (463)
.+...+++.|++|+++ |+.++++++.+.++|..++|.+++.+.+. .|||+.|++.++..++..+..++. |+..+
T Consensus 126 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 202 (491)
T 4aps_A 126 KPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA---AGYHVAFSLAAIGMFIGLLVYYFGGKKTLD 202 (491)
T ss_dssp HHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 9999999999999988 67788889999999999999998877654 479999999877766655544332 21110
Q ss_pred ---HHHhhCCcHHHHHHHHHH----------------HhCchhHHHHHHH--H-------HHHhhcccccCCchhhhhcc
Q 012472 179 ---SIIQRSNDHQKAQKMLQR----------------VRGIADVEAELND--L-------IRASSISKSITHPFKNIAQR 230 (463)
Q Consensus 179 ---~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~--~-------~~~~~~~~~~~~~~~~~~~~ 230 (463)
...+++.+.++.++..+. ..+..+.+..... . .......++...+.. .
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 278 (491)
T 4aps_A 203 PHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTST----E 278 (491)
T ss_dssp SCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred ccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHH----H
Confidence 000111122333332222 0010000000000 0 000000000000000 0
Q ss_pred cchhhHHHHHHHHHHHhhhhhhHHHhhHHHHHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhh----
Q 012472 231 KYRPQLVMAILIPFFQQVTGINIVGLYSPVLFRT-LKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFL---- 305 (463)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~---- 305 (463)
+.+........+..+.....+.....+.|.+.++ .+.+..... .......+..+++.++.+++.||++||+...
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~ 357 (491)
T 4aps_A 279 HLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVS-WFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKF 357 (491)
T ss_dssp ---CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSG-GGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHH-HHhccchHHHHHHHHHHHHHHHHHhccCCCchHHH
Confidence 1111111222222222233344455666777765 344434444 5667777888889999999999999987654
Q ss_pred -HhhHHHHHHHHHHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHH
Q 012472 306 -VGGIQMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNF 384 (463)
Q Consensus 306 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~ 384 (463)
.+..+.+++.+.+....... .. ......+.......+.+.+.... .+....+..|.+|++.|+++.|+.+...+
T Consensus 358 ~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 432 (491)
T 4aps_A 358 AVGLMFAGLSFLLMAIPGALY-GT---SGKVSPLWLVGSWALVILGEMLI-SPVGLSVTTKLAPKAFNSQMMSMWFLSSS 432 (491)
T ss_dssp HHHHHHHHHHHTTTHHHHHHC-CC---CTTCCTHHHHHHHHHHHHHHHTT-TTHHHHHHHHHTTTTCSSSSTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc-CC---CCCccHHHHHHHHHHHHHHHHHH-hHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 55555555544443321110 00 01112333444444444444433 45567778899999999999999999999
Q ss_pred HHHHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCC
Q 012472 385 LFTFLTAQTFLPMLCHFKAGIFFFFGGLVLIMTTFMHFFLPET 427 (463)
Q Consensus 385 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (463)
+|..+++.+.+.+.+......+...++++++..++.++..++.
T Consensus 433 ~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (491)
T 4aps_A 433 VGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRI 475 (491)
T ss_dssp HHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888776555666666666666555555544443
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.98 E-value=6.1e-33 Score=258.11 Aligned_cols=336 Identities=15% Similarity=0.138 Sum_probs=248.8
Q ss_pred cCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccccc
Q 012472 22 VGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFG 101 (463)
Q Consensus 22 ~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 101 (463)
+.+++|.++.+.+++.+.+.++..+++++.|+++||+|||+++..+..+.+++.++++++++++.+++.|+++|++.+..
T Consensus 26 ~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~ 105 (375)
T 2gfp_A 26 MARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVG 105 (375)
T ss_dssp HHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhh
Confidence 46677999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHh-hcCCCChHHH
Q 012472 102 NQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGA-IFLPETPNSI 180 (463)
Q Consensus 102 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~-~~~~e~~~~~ 180 (463)
.+...+++.|++|+++|++++++.+.+..+|..+++.+++.+.+. .+||+.|++.++..++..+.. +++||++++.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (375)
T 2gfp_A 106 GVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM---WNWRACYLFLLVLCAGVTFSMARWMPETRPVD 182 (375)
T ss_dssp HHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH---HHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTT
T ss_pred hhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHHHCcccCCCC
Confidence 999999999999999999999999999999999999998776543 589999999888887776644 4478876321
Q ss_pred HhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHHhhHHH
Q 012472 181 IQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVGLYSPV 260 (463)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (463)
++ +++.+.++++.+++ +.++...+..+...........+.|.
T Consensus 183 ---~~-------------------------------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (375)
T 2gfp_A 183 ---AP-------------------------------RTRLLTSYKTLFGN----SGFNCYLLMLIGGLAGIAAFEACSGV 224 (375)
T ss_dssp ---CC-------------------------------CCCTTTCSTHHHHH----HHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred ---cc-------------------------------cccHHHHHHHHhcC----cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 01112233444332 22333334444444555666677777
Q ss_pred HHHH-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHH-HHHHHHHHHHHHHhhhCCCCCCcchhHH
Q 012472 261 LFRT-LKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQ-MLVSQVMIGSIMAAQLGDHGGFSEGYAY 338 (463)
Q Consensus 261 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (463)
++++ .+.++...+ .......++.+++.++.+++.||++++ ...+... ...+...+..... ...+.+
T Consensus 225 ~~~~~~g~~~~~~g-~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~---------~~~~~~ 292 (375)
T 2gfp_A 225 LMGAVLGLSSMTVS-ILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWF---------GVMNVW 292 (375)
T ss_dssp SSHHHHHHHHHHHH-HHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHH---------HHHHHH
T ss_pred HHHHHhCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhh---------ccccHH
Confidence 7665 666666665 778888889999999999999998772 2222222 2222211111100 012334
Q ss_pred HHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccchhHHHHHHH
Q 012472 339 LILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGGL 412 (463)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (463)
.......+.+.+.+.. .+....+..|..| +.|+++.|+.+...++|..++|.+.+.+.+..++...+...++
T Consensus 293 ~~~~~~~l~g~~~~~~-~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~ 364 (375)
T 2gfp_A 293 TLLVPAALFFFGAGML-FPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLM 364 (375)
T ss_dssp HHHHHHHHHHHHHHHT-SSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-hHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 3444445555554443 4556667789988 8999999999999999999999999999877666555554433
No 6
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.96 E-value=8.1e-29 Score=233.15 Aligned_cols=362 Identities=10% Similarity=0.022 Sum_probs=220.2
Q ss_pred cCCccccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHH---HhhhhhhhH-HHHHHHHHHhhcc
Q 012472 22 VGNYCKFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGS---ALGGSAFNI-YMLIFGRLLLGVG 97 (463)
Q Consensus 22 ~~~~~~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~---~~~~~~~~~-~~l~~~r~l~G~~ 97 (463)
+++++|+|..+.|++.+.+.++..++++++|+++||+|||++++++..+++++. ..+.+++.. ..+...+++.|++
T Consensus 34 l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (417)
T 2cfq_A 34 LHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIY 113 (417)
T ss_dssp HHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSS
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678999999999999999999999999999999999999998888775532 222333322 1245567777777
Q ss_pred cccccchhhHHhhhcCCC--CcccchhhhhhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhcCCC
Q 012472 98 IGFGNQSVPLYLSEMAPP--KYRGTFNIGFQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIFLPE 175 (463)
Q Consensus 98 ~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~~~e 175 (463)
.+...+.....+.++.++ ++|+...+....+..+|..++|.+++.+.+ .+||+.|++.++..++..+..++.+|
T Consensus 114 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~----~~~~~~f~~~~~~~~~~~~~~~~~~~ 189 (417)
T 2cfq_A 114 LGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT----INNQFVFWLGSGCALILAVLLFFAKT 189 (417)
T ss_dssp TTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH----HCSHHHHTTTTTTTTTHHHHSCSSCC
T ss_pred HHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH----hchhHHHHHHHHHHHHHHHHHHHcCc
Confidence 666555555555555543 456777788888888999999988877654 36999999888776655555555444
Q ss_pred ChHHHHhhCCcHHHHHHHHHHHhCchhHHHHHHHHHHHhhcccccCCchhhhhcccchhhHHHHHHHHHHHhhhhhhHHH
Q 012472 176 TPNSIIQRSNDHQKAQKMLQRVRGIADVEAELNDLIRASSISKSITHPFKNIAQRKYRPQLVMAILIPFFQQVTGINIVG 255 (463)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (463)
++++ +.+++++ + +.+.++....++++.+++ +.++...+..+.....+..+.
T Consensus 190 ~~~~---~~~~~~~-~---------------------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 240 (417)
T 2cfq_A 190 DAPS---SATVANA-V---------------------GANHSAFSLKLALELFRQ----PKLWFLSLYVIGVSCTYDVFD 240 (417)
T ss_dssp CCSC---SSCSSSS-S---------------------SSCCCCCCHHHHHHHTTC----HHHHHHHHHHHHHHHHHHHHH
T ss_pred cccc---ccccccc-c---------------------ccccccccHHHHHHHhcC----CchhhHHHHHHHHHHHHHHHH
Confidence 3311 0000000 0 000000000112223222 222222222222222334444
Q ss_pred hhHHHHHHHcCCCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHHhhhCCCCCC
Q 012472 256 LYSPVLFRTLKLGE---STSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMAAQLGDHGGF 332 (463)
Q Consensus 256 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (463)
.+.|.++.+..... ....+....+..++.+++.++.++++||+|||+.+..+..+.++..+.+...
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~----------- 309 (417)
T 2cfq_A 241 QQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA----------- 309 (417)
T ss_dssp HHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC-----------
T ss_pred HHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh-----------
Confidence 55677765532211 1222356667777888899999999999999998887776665554333211
Q ss_pred cchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHH-HHHHHHHHHHHHhhhhhhhhcccchhHHHHHH
Q 012472 333 SEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSIT-VAVNFLFTFLTAQTFLPMLCHFKAGIFFFFGG 411 (463)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (463)
++.+..++...+.+.+... ..+..+.+.+|.+|++.|+++.++. +....+|+.++|.+.|.+.+..++...+...+
T Consensus 310 --~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~ 386 (417)
T 2cfq_A 310 --TSALEVVILKTLHMFEVPF-LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLG 386 (417)
T ss_dssp --CSHHHHHHHTTHHHHHHHH-HHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHH
T ss_pred --ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHH
Confidence 1122222222222222221 1223456778999999999999994 88889999999999999998877555444444
Q ss_pred HHHHHHHH-HHHhcCCCCCC
Q 012472 412 LVLIMTTF-MHFFLPETKNV 430 (463)
Q Consensus 412 ~~~~~~~~-~~~~~~~~~~~ 430 (463)
+..+++.+ .+...+|+++.
T Consensus 387 ~~~l~~~~~~~~~~~~~~~~ 406 (417)
T 2cfq_A 387 LVALGFTLISVFTLSGPGPL 406 (417)
T ss_dssp HHHHHHHHHHTTSSCCSCTT
T ss_pred HHHHHHHHHHHhhhcCCCch
Confidence 44443333 33444544433
No 7
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.95 E-value=2.9e-28 Score=236.93 Aligned_cols=142 Identities=14% Similarity=0.123 Sum_probs=129.6
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHHhhhhhh-cchhhhhHHHHHHHHHHHhhhhhh-hHHHHHHHHHHhhcccccccchh
Q 012472 28 FDSQLLTTFTSSLYITGILGSLIASSVTRAL-GRKVSILIGGVAFLAGSALGGSAF-NIYMLIFGRLLLGVGIGFGNQSV 105 (463)
Q Consensus 28 ~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~-Grr~~~~~~~~~~~i~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~ 105 (463)
++..+.+++.+.+.++..+++++.|+++||+ |||+++..+.++.+++.+++++++ +++.+++.|++.|++.+...+..
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence 8999999999999999999999999999999 999999999999999999999999 99999999999999999999999
Q ss_pred hHHhhhcCCCCcccchhhh---hhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhc
Q 012472 106 PLYLSEMAPPKYRGTFNIG---FQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIF 172 (463)
Q Consensus 106 ~~~i~~~~~~~~r~~~~~~---~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~ 172 (463)
.+++.|++|+++|+++.+. .+.+.++|..+++.+++.+.+. .|||+.|++.++..++..+..++
T Consensus 131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~---~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKN---FGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHT---SCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999877666 8999999999999998877653 47999999988887766655544
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.45 E-value=2e-13 Score=129.70 Aligned_cols=183 Identities=11% Similarity=0.047 Sum_probs=133.2
Q ss_pred hHHHHHHHHHHHhhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHH
Q 012472 235 QLVMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVS 314 (463)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~ 314 (463)
+.+....+..+........+....|.+.++. .+..+.+ +......++..++.++.|+++||+|||+.+..+.++..++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g-~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~ 105 (451)
T 1pw4_A 28 QIFLGIFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLG-FALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAV 105 (451)
T ss_dssp HHHHHHHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHH-HHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHH-HHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHH
Confidence 3444444555555555556677788888888 7777777 8888999999999999999999999999999999988888
Q ss_pred HHHHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhh
Q 012472 315 QVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTF 394 (463)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~ 394 (463)
.++..+.... .++.+..++...+.+.+.+.. .+....++.|.+|++.|+.++++.+....+|..++|.+.
T Consensus 106 ~~~~~~~~~~---------~~~~~~l~~~~~l~G~~~~~~-~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~ 175 (451)
T 1pw4_A 106 MLFMGFVPWA---------TSSIAVMFVLLFLCGWFQGMG-WPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLF 175 (451)
T ss_dssp HHHHHHCHHH---------HSSSSHHHHHHHHHHHHHHHT-HHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHH
T ss_pred HHHHHhhhhc---------cccHHHHHHHHHHHHHHhhhc-cchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 8777661100 023444455555555554433 355567778999999999999999999999999999999
Q ss_pred hhhhhccc-chhHHHH-HHHHHHHHHHHHHhcCCCCC
Q 012472 395 LPMLCHFK-AGIFFFF-GGLVLIMTTFMHFFLPETKN 429 (463)
Q Consensus 395 ~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 429 (463)
+.+.+..+ +...+.. +++.++..++..+..||+++
T Consensus 176 ~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 176 LLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp HHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 99888777 6654444 44444555555666776543
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.41 E-value=5.5e-12 Score=119.23 Aligned_cols=154 Identities=12% Similarity=0.020 Sum_probs=118.6
Q ss_pred HHHHHHHHHHhhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHH
Q 012472 237 VMAILIPFFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQV 316 (463)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 316 (463)
+..+...++.............|.+.++++.+..+.+ ++.....++..++.++.|+++||+|||+.+..+..+..++.+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~ 106 (438)
T 3o7q_A 28 FALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAG-LIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAA 106 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHH-HHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 3334444444445556677788888899999988877 888999999999999999999999999999999999888887
Q ss_pred HHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhh
Q 012472 317 MIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLP 396 (463)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~ 396 (463)
+...... .++.+..++...+.+.+.+.. .+....+++|.+|++.|+.++++.+....+|..++|.+.+.
T Consensus 107 ~~~~~~~----------~~~~~~l~~~~~l~G~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 175 (438)
T 3o7q_A 107 LFWPAAE----------IMNYTLFLVGLFIIAAGLGCL-ETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_dssp HHHHHHH----------TTCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHhccc----------cccHHHHHHHHHHHHhhHHHh-hhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7633211 133455555556666555544 34556777899999999999999999999999999999999
Q ss_pred hh-hccc
Q 012472 397 ML-CHFK 402 (463)
Q Consensus 397 ~~-~~~~ 402 (463)
+. +..+
T Consensus 176 l~~~~~~ 182 (438)
T 3o7q_A 176 LILSNVP 182 (438)
T ss_dssp HHHTSSC
T ss_pred HHhcccc
Confidence 88 5443
No 10
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.36 E-value=1.5e-11 Score=119.07 Aligned_cols=165 Identities=14% Similarity=0.064 Sum_probs=119.0
Q ss_pred HHHhhhhhhHHHhhHHHHHH-HcC------CCCchhHHHHHHHHHHHHHHHHHHHHHHHhhc-CCchhhhHhhHHHHHHH
Q 012472 244 FFQQVTGINIVGLYSPVLFR-TLK------LGESTSLLLSALVAGGMGTVFAIVSMILADKF-GRKVLFLVGGIQMLVSQ 315 (463)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~ 315 (463)
.+.....++....+.+.+++ +.+ .+..+.+ .......++..++.++.|+++||+ |||+.+..+.++..++.
T Consensus 21 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g-~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~ 99 (524)
T 2xut_A 21 EACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAK-DVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGH 99 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHH-HHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 33333455556666776664 567 7777777 888888999999999999999999 99999998888887777
Q ss_pred HHHHHHHHhhhCCCCCCcch-hHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHH---HHHHHHHHHHHHH
Q 012472 316 VMIGSIMAAQLGDHGGFSEG-YAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSI---TVAVNFLFTFLTA 391 (463)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~---~~~~~~~g~~~~~ 391 (463)
++..+. + +.+..++...+.+.+.+.. .+....+++|.+|++.|+++.+. .+....+|..++|
T Consensus 100 ~~~~~~-------------~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~ 165 (524)
T 2xut_A 100 AFLAIF-------------EHSVQGFYTGLFLIALGSGGI-KPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFAS 165 (524)
T ss_dssp HHHHHT-------------SSCHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHh-------------cccHHHHHHHHHHHHHhcccc-chhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 666543 2 3444455555555554433 45666777899999999876666 8888999999999
Q ss_pred hhhhhhhhcccchhHHHHHHHHHHHHHHHHHh
Q 012472 392 QTFLPMLCHFKAGIFFFFGGLVLIMTTFMHFF 423 (463)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (463)
.+.+.+.+..++...+...++..+.+.+....
T Consensus 166 ~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 166 LSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888766555555554444444433
No 11
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.35 E-value=3.7e-12 Score=117.75 Aligned_cols=170 Identities=14% Similarity=0.099 Sum_probs=125.7
Q ss_pred HHHhhhhhhHHHhhHHHHHHHcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcCCchhhhHhhHHHHHHHHHHHHHHH
Q 012472 244 FFQQVTGINIVGLYSPVLFRTLKLGESTSLLLSALVAGGMGTVFAIVSMILADKFGRKVLFLVGGIQMLVSQVMIGSIMA 323 (463)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 323 (463)
.+.............|.+.++.+.+..+.+ .......++..++.++.|+++||+|||+.+..+..+..++.+.....
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g-~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-- 85 (375)
T 2gfp_A 9 VAVGQMAQTIYIPAIADMARDLNVREGAVQ-SVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT-- 85 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSTTHHHH-HHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhhhhHHHHHHcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh--
Confidence 333444555666677888888998888877 88888999999999999999999999999999998888887777654
Q ss_pred hhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCcccccchhHHHHHHHHHHHHHHHhhhhhhhhcccc
Q 012472 324 AQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEIRSAGQSITVAVNFLFTFLTAQTFLPMLCHFKA 403 (463)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~ 403 (463)
++.+..+....+.+.+.+.. .+....+..|.+|+++|++++++.+....+|..++|.+.+.+.+..++
T Consensus 86 -----------~~~~~l~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 153 (375)
T 2gfp_A 86 -----------SSLTVLIAASAMQGMGTGVG-GVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNW 153 (375)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHH
T ss_pred -----------ccHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccH
Confidence 33444444555555444433 455666778999999999999999999999999999999999887776
Q ss_pred hhHHHHHHHHHHHHHH-HHHhcCCCC
Q 012472 404 GIFFFFGGLVLIMTTF-MHFFLPETK 428 (463)
Q Consensus 404 ~~~~~~~~~~~~~~~~-~~~~~~~~~ 428 (463)
...+...++..+...+ ..+..||++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (375)
T 2gfp_A 154 RACYLFLLVLCAGVTFSMARWMPETR 179 (375)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCcccC
Confidence 6555444443333322 334455543
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.32 E-value=1.9e-11 Score=117.39 Aligned_cols=170 Identities=12% Similarity=0.089 Sum_probs=122.8
Q ss_pred HHHHHHHHHHhhhhhhHHHhhHHHHHHH------cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhh-cCCchhhhHhhH
Q 012472 237 VMAILIPFFQQVTGINIVGLYSPVLFRT------LKLGESTSLLLSALVAGGMGTVFAIVSMILADK-FGRKVLFLVGGI 309 (463)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~ 309 (463)
++......+.....++....+.+.++++ .+.+..+.+ .......++..++.++.|+++|| +|||+.+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~ 93 (491)
T 4aps_A 15 LSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAA-SIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGV 93 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 3334444444445566666667776654 688877777 88889999999999999999999 899999999988
Q ss_pred HHHHHHHHHHHHHHhhhCCCCCCcchhHHHHHHHHHHHhhhhhccccceecccccccCCccc--ccchhHHHHHHHHHHH
Q 012472 310 QMLVSQVMIGSIMAAQLGDHGGFSEGYAYLILVMVCLYSSGYCYSWGPLAWLVPSEIFPLEI--RSAGQSITVAVNFLFT 387 (463)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~g~ 387 (463)
+..++.++.... ++.+..++...+.+.+.+.. .+....+++|.+|++. |+.+.++.+....+|.
T Consensus 94 ~~~~~~~~~~~~-------------~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 159 (491)
T 4aps_A 94 LIMLGHIVLALP-------------FGASALFGSIILIIIGTGFL-KPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGA 159 (491)
T ss_dssp HHHHHHHHHHSC-------------CSTTHHHHHHHHHHHHHHHH-HHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-------------hhHHHHHHHHHHHHHHHHhc-cchHHHHHHHHcCcccccceeeehHHHHHHHHHH
Confidence 888777665442 22344444555555544433 3556677789999988 7788888999999999
Q ss_pred HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHH
Q 012472 388 FLTAQTFLPMLCHFKAGIFFFFGGLVLIMTTFMH 421 (463)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (463)
.++|.+.+.+.+..++...+...++..+.+.+..
T Consensus 160 ~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 193 (491)
T 4aps_A 160 FIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVY 193 (491)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998887665555554444444433
No 13
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.26 E-value=6.5e-12 Score=117.81 Aligned_cols=146 Identities=12% Similarity=0.111 Sum_probs=121.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhcccccccchhhHH
Q 012472 29 DSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSAFNIYMLIFGRLLLGVGIGFGNQSVPLY 108 (463)
Q Consensus 29 s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 108 (463)
+..+.++..+...++..++.++.|+++||+|||+.+..+.++.+++.++.++.++.+.+++..++.+++.+...+....+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888888888999999999999999999999999998888888888888888888888888888777777777889
Q ss_pred hhhcCCCCcccchhhh-hhHHHHHHHHHHHHhhhhhcccCCcchhHHHHHhhHHHHHHHHHHhhc-CCCCh
Q 012472 109 LSEMAPPKYRGTFNIG-FQLCGAIGVLSANLLNYGTQKIKGGWGWRISLAMAAAPASILTIGAIF-LPETP 177 (463)
Q Consensus 109 i~~~~~~~~r~~~~~~-~~~~~~~G~~~~~~~~~~~~~~~~~~gwr~~f~~~~~~~~~~~~~~~~-~~e~~ 177 (463)
+.|.+|++.|+...+. ++....+|..++|.+++.+.+. .|++..|.+.++.+++..+..++ .||.+
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~---~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYES---IGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHH---SHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHh---cCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999999999888 4888889999999998776542 47888998888887777666544 66554
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.06 E-value=6.2e-10 Score=106.76 Aligned_cols=150 Identities=16% Similarity=0.046 Sum_probs=105.7
Q ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhhhHHHHHHHHHHHhhhhh-----hhHHHHHHH-HHHhhccccc
Q 012472 27 KFDSQLLTTFTSSLYITGILGSLIASSVTRALGRKVSILIGGVAFLAGSALGGSA-----FNIYMLIFG-RLLLGVGIGF 100 (463)
Q Consensus 27 ~~s~~~~~~~~s~~~~~~~i~~~~~g~l~dr~Grr~~~~~~~~~~~i~~~~~~~~-----~~~~~l~~~-r~l~G~~~~~ 100 (463)
+.+............+...++.++.+++.||+|||+.++.+.....++.+..+.. ++...+... -+..+. ...
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 386 (491)
T 4gc0_A 308 GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAF-AMS 386 (491)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH-HTT
T ss_pred CCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH-HhH
Confidence 4566666677777788889999999999999999999999888887776665443 122222222 222222 223
Q ss_pred ccchhhHHhhhcCCCCcccchhhhhhHHHHHHHHHHHHhhhhhccc---CCcchhHHHHHhhHHHHHHHHHHh-hcCCCC
Q 012472 101 GNQSVPLYLSEMAPPKYRGTFNIGFQLCGAIGVLSANLLNYGTQKI---KGGWGWRISLAMAAAPASILTIGA-IFLPET 176 (463)
Q Consensus 101 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~---~~~~gwr~~f~~~~~~~~~~~~~~-~~~~e~ 176 (463)
..+....+.+|.+|.+.|++++++......+|..+++.+...+... ....++.+.|++.++++++..+.. +++||+
T Consensus 387 ~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET 466 (491)
T 4gc0_A 387 WGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET 466 (491)
T ss_dssp TTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence 4467778999999999999999999999999988887664433221 111245567888888887777665 459998
Q ss_pred h
Q 012472 177 P 177 (463)
Q Consensus 177 ~ 177 (463)
.
T Consensus 467 k 467 (491)
T 4gc0_A 467 K 467 (491)
T ss_dssp T
T ss_pred C
Confidence 5
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=61.44 E-value=4.6 Score=18.82 Aligned_cols=14 Identities=21% Similarity=0.460 Sum_probs=11.2
Q ss_pred HHHhhhhhhcchhh
Q 012472 50 IASSVTRALGRKVS 63 (463)
Q Consensus 50 ~~g~l~dr~Grr~~ 63 (463)
+.|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 36888999999864
No 16
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=27.91 E-value=1.4e+02 Score=23.80 Aligned_cols=25 Identities=8% Similarity=0.115 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhcch
Q 012472 37 TSSLYITGILGSLIASSVTRALGRK 61 (463)
Q Consensus 37 ~s~~~~~~~i~~~~~g~l~dr~Grr 61 (463)
+.-|.+|+.+++.+.|++.||..++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccc
Confidence 3456788888899999999987644
No 17
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=25.63 E-value=89 Score=26.26 Aligned_cols=29 Identities=7% Similarity=-0.006 Sum_probs=13.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhcCCCCCCCH
Q 012472 404 GIFFFFGGLVLIMTTFMHFFLPETKNVPI 432 (463)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (463)
+.+++--.+..+++.+++.++..++.+..
T Consensus 202 Wvy~vgP~~Ga~la~~~y~~l~~~~~~~~ 230 (263)
T 2b6o_A 202 WVYWVGPVIGAGLGSLLYDFLLFPRLKSV 230 (263)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTSCCSSCH
T ss_pred eHHHHHHHHHHHHHHHHHHHHhCCccchh
Confidence 34444334444555555555544444443
No 18
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=23.69 E-value=76 Score=16.51 Aligned_cols=11 Identities=45% Similarity=0.664 Sum_probs=6.6
Q ss_pred HHhhcCCCChH
Q 012472 168 IGAIFLPETPN 178 (463)
Q Consensus 168 ~~~~~~~e~~~ 178 (463)
....+++|+|+
T Consensus 18 FFAI~FRePPr 28 (32)
T 3arc_T 18 FFAIFFREPPR 28 (32)
T ss_dssp HHHHHTSCCCC
T ss_pred HHhhhhcCCCC
Confidence 34455778774
Done!