BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012474
(463 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 234 bits (597), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 141/472 (29%), Positives = 229/472 (48%), Gaps = 31/472 (6%)
Query: 17 VILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFN------SPNP---SNYPHFSFNS 67
V++ P P+QGHINP+ +LA +L+ +GF IT ++T +N S P + F+F S
Sbjct: 11 VVMIPYPVQGHINPLFKLAKLLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGFTDFNFES 70
Query: 68 ISESLWESEVS---TENAISLLTVLNDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWH 124
I + L E +++ +L + + P+ + L +L ++ PVTCL++D
Sbjct: 71 IPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRL-NHSTNVPPVTCLVSDCCMS 129
Query: 125 FAQTVADTLRLPRIVLRTXXXXXXXXXXXXXXXXEKGYLA-EQVSFSSDSQLEKPVTELP 183
F A+ LP ++ + E+G + + S+ ++ LE V +P
Sbjct: 130 FTIQAAEEFELPNVLYFSSSACSLLNVMHFRSFVERGIIPFKDESYLTNGCLETKVDWIP 189
Query: 184 PL---RVKDIP--IIVTHDTRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELTRLHKDF 238
L R+KDI I T+ + V + + ++ N+F +LE + L
Sbjct: 190 GLKNFRLKDIVDFIRTTNPNDIMLEFFIEVADRVNKDTTILLNTFNELESDVINALSSTI 249
Query: 239 PIPMFPIGPFHKYCL---------AXXXXXXXXXXXCISWLDKQAAKSVMYVSFGSIVVV 289
P ++PIGP + C+ WL+ + SV+YV+FGS V+
Sbjct: 250 P-SIYPIGPLPSLLKQTPQIHQLDSLDSNLWKEDTECLDWLESKEPGSVVYVNFGSTTVM 308
Query: 290 NVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIVKWAPQQEV 349
+ LE AWGLAN + FLW++RP LV G + F + RG I W PQ +V
Sbjct: 309 TPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVI--FSSEFTNEIADRGLIASWCPQDKV 366
Query: 350 LAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFER 409
L HP++GGF TH GWNST ESIC GVPM+C P F DQ + R++ + W +G+ ++ +R
Sbjct: 367 LNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEIDTNVKR 426
Query: 410 REIETAIRRVTVEAEGQEMRERIMHXXXXXXXXXXXAGSSYQSLERLVDHIL 461
E+ I V +G++M+++ M G SY +L +++ +L
Sbjct: 427 EELAKLINEVIAGDKGKKMKQKAMELKKKAEENTRPGGCSYMNLNKVIKDVL 478
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 151 bits (382), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 106/352 (30%), Positives = 166/352 (47%), Gaps = 17/352 (4%)
Query: 113 PVTCLITDAIWHFAQTVADTLRLPRIVLRTXXXXXXXXXXXXXXXXEK-GYLAEQVSFSS 171
PV+CL+ DA FA +A + + + T EK G Q
Sbjct: 112 PVSCLVADAFIWFAADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGIQ---GR 168
Query: 172 DSQLEKPVTELPPLRVKDIPIIVTHDTRN--FHQLISAVVSKTKACSGLIWNSFEDLEQT 229
+ +L + + +R +D+ + N F +++ + + + NSFE+L+ +
Sbjct: 169 EDELLNFIPGMSKVRFRDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDS 228
Query: 230 ELTRLHKDFPIPMFPIGPFHKYCLAXXXXXXXXXXXCISWLDKQAAKSVMYVSFGSIVVV 289
LT K IGPF+ L C+ WL ++ SV+Y+SFG++
Sbjct: 229 -LTNDLKSKLKTYLNIGPFN---LITPPPVVPNTTGCLQWLKERKPTSVVYISFGTVTTP 284
Query: 290 NVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIVKWAPQQEV 349
E + ++ L SRVPF+W +R + LP+GFLE G G +V WAPQ EV
Sbjct: 285 PPAEVVALSEALEASRVPFIWSLRD------KARVHLPEGFLEKTRGYGMVVPWAPQAEV 338
Query: 350 LAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERK-FE 408
LAH AVG F TH GWNS ES+ GVP+IC+P FGDQ +N R V V +G+ +E F
Sbjct: 339 LAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVRIEGGVFT 398
Query: 409 RREIETAIRRVTVEAEGQEMRERIMHXXXXXXXXXXXAGSSYQSLERLVDHI 460
+ + + ++ + +G+++RE + GSS ++ LVD +
Sbjct: 399 KSGLMSCFDQILSQEKGKKLRENLRALRETADRAVGPKGSSTENFITLVDLV 450
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 146 bits (369), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 118/456 (25%), Positives = 191/456 (41%), Gaps = 25/456 (5%)
Query: 16 RVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSNY-------PHFSFNSI 68
V + P H P+L L + ++ +T + N + + P+ + ++
Sbjct: 15 HVAVLAFPFGTHAAPLLSLVKKIATEAPKVTFSFFCTTTTNDTLFSRSNEFLPNIKYYNV 74
Query: 69 SESLWESEVSTENAISLLTVLNDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQT 128
+ L + VS+ N + + F+ + + ++ + +TCL+TDA + F
Sbjct: 75 HDGLPKGYVSSGNPREPIFLFIKAMQENFKHVIDEAVAETGKN--ITCLVTDAFFWFGAD 132
Query: 129 VADTLRLPRIVLRTXXXXXXXXXXXXXXXXEKGYLAEQVSFSSDSQLEKPVTELPPLRVK 188
+A+ + + L T EK E S L P L+
Sbjct: 133 LAEEMHAKWVPLWTAGPHSLLTHVYTDLIREKTGSKEVHDVKSIDVLPG----FPELKAS 188
Query: 189 DIPIIVTHDTR-NFHQLISAVVSKTKACSGLIWNSFEDLEQTELTRLHKDFPIPMFPIGP 247
D+P V D F ++ + + + + NSF + L+ F + + +GP
Sbjct: 189 DLPEGVIKDIDVPFATMLHKMGLELPRANAVAINSFATIHPLIENELNSKFKL-LLNVGP 247
Query: 248 FHKYCLAXXXXXXXXXXXCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVP 307
F+ L C+ WLD+ SV+Y+SFGS+V E +A L P
Sbjct: 248 FN---LTTPQRKVSDEHGCLEWLDQHENSSVVYISFGSVVTPPPHELTALAESLEECGFP 304
Query: 308 FLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIVKWAPQQEVLAHPAVGGFWTHNGWNST 367
F+W R + E LPKGFLE +G IV WAPQ E+L H +VG F TH+GWNS
Sbjct: 305 FIWSFRG------DPKEKLPKGFLERTKTKGKIVAWAPQVEILKHSSVGVFLTHSGWNSV 358
Query: 368 LESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERRE-IETAIRRVTVEAEGQ 426
LE I GVPMI +P FGDQ +N V +G+ ++ +E I+ A+ +G
Sbjct: 359 LECIVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLTKESIKKALELTMSSEKGG 418
Query: 427 EMRERIMHXXXXXXXXXXXAGSSYQSLERLVDHILS 462
MR++I+ G+S L+ + S
Sbjct: 419 IMRQKIVKLKESAFKAVEQNGTSAMDFTTLIQIVTS 454
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 142 bits (357), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 86/261 (32%), Positives = 129/261 (49%), Gaps = 21/261 (8%)
Query: 211 KTKACSGLIWNSFEDLEQTELTRLHK---DFPIPMFPIGPFHKYCLAXXXXXXXXXXXCI 267
+ K G++ N+F +LE + L + D P P++P+GP + C+
Sbjct: 203 RYKEAEGILVNTFFELEPNAIKALQEPGLDKP-PVYPVGPL--VNIGKQEAKQTEESECL 259
Query: 268 SWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVR-PGLVPGVEWLEP- 325
WLD Q SV+YVSFGS + + E+A GLA+S FLWV+R P + + +
Sbjct: 260 KWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSH 319
Query: 326 --------LPKGFLEMLDGRGHIVK-WAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVP 376
LP GFLE RG ++ WAPQ +VLAHP+ GGF TH GWNSTLES+ G+P
Sbjct: 320 SQTDPLTFLPPGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIP 379
Query: 377 MICQPCFGDQLVNARYVSHVWRVGLHLERK----FERREIETAIRRVTVEAEGQEMRERI 432
+I P + +Q +NA +S R L R E+ ++ + EG+ +R ++
Sbjct: 380 LIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVRREEVARVVKGLMEGEEGKGVRNKM 439
Query: 433 MHXXXXXXXXXXXAGSSYQSL 453
G+S ++L
Sbjct: 440 KELKEAACRVLKDDGTSTKAL 460
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 128 bits (322), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 92/271 (33%), Positives = 134/271 (49%), Gaps = 32/271 (11%)
Query: 208 VVSKTKACSGLIWNSFEDLEQTELTRL--HKDFPIPMFPIGPFHKYCLAXXXXXXXXXXX 265
+ + + G+I N+F DLEQ+ + L H + P++ +GP
Sbjct: 205 LAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHD 264
Query: 266 CI-SWLDKQAAKSVMYVSFGSI-VVVNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWL 323
I WLD+Q KSV+++ FGS+ V ++ EIA GL +S V FLW
Sbjct: 265 LILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLW-------SNSAEK 317
Query: 324 EPLPKGFLE--MLDGRGHIVKWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQP 381
+ P+GFLE L+G+G I WAPQ EVLAH A+GGF +H GWNS LES+ GVP++ P
Sbjct: 318 KVFPEGFLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWP 377
Query: 382 CFGDQLVNARYVSHVWRVGLHLERKFER-------REIETAIRRVT-----VEAEGQEMR 429
+ +Q +NA + W VGL L + + EIE ++ + V + QEM+
Sbjct: 378 IYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKKVQEMK 437
Query: 430 ERIMHXXXXXXXXXXXAGSSYQSLERLVDHI 460
E GSS S+ +L+D I
Sbjct: 438 E-------MSRNAVVDGGSSLISVGKLIDDI 461
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 128 bits (322), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 92/271 (33%), Positives = 134/271 (49%), Gaps = 32/271 (11%)
Query: 208 VVSKTKACSGLIWNSFEDLEQTELTRL--HKDFPIPMFPIGPFHKYCLAXXXXXXXXXXX 265
+ + + G+I N+F DLEQ+ + L H + P++ +GP
Sbjct: 205 LAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHD 264
Query: 266 CI-SWLDKQAAKSVMYVSFGSI-VVVNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWL 323
I WLD+Q KSV+++ FGS+ V ++ EIA GL +S V FLW
Sbjct: 265 LILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLW-------SNSAEK 317
Query: 324 EPLPKGFLE--MLDGRGHIVKWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQP 381
+ P+GFLE L+G+G I WAPQ EVLAH A+GGF +H GWNS LES+ GVP++ P
Sbjct: 318 KVFPEGFLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWP 377
Query: 382 CFGDQLVNARYVSHVWRVGLHLERKFER-------REIETAIRRVT-----VEAEGQEMR 429
+ +Q +NA + W VGL L + + EIE ++ + V + QEM+
Sbjct: 378 IYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDLMDKDSIVHKKVQEMK 437
Query: 430 ERIMHXXXXXXXXXXXAGSSYQSLERLVDHI 460
E GSS S+ +L+D I
Sbjct: 438 E-------MSRNAVVDGGSSLISVGKLIDDI 461
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 9/101 (8%)
Query: 340 IVKWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRV 399
+ KW PQ ++L HP F TH G N E+I G+P + P F DQ N ++H
Sbjct: 72 LYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDN---IAHXKAR 128
Query: 400 GLHLERKFE---RREIETAIRRVTVEAEGQE---MRERIMH 434
G + F ++ A++RV + +E RI H
Sbjct: 129 GAAVRVDFNTXSSTDLLNALKRVINDPSYKENVXKLSRIQH 169
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 342 KWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGL 401
+W PQ ++L + F TH G ST+E++ VPM+ P +Q +NA + + +G
Sbjct: 311 QWVPQLDILTKASA--FITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVELG-LGR 367
Query: 402 HLERK 406
H+ R
Sbjct: 368 HIPRD 372
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 7/81 (8%)
Query: 343 WAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLH 402
W PQ +L + F TH G + E + PMI P DQ NA + GL
Sbjct: 290 WVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQ-----GLG 342
Query: 403 LERKFERREIETAIRRVTVEA 423
+ RK E + R T A
Sbjct: 343 VARKLATEEATADLLRETALA 363
>pdb|4FZR|A Chain A, Crystal Structure Of Ssfs6, Streptomyces Sp. Sf2575
Glycosyltransferase
Length = 398
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 13/94 (13%)
Query: 323 LEPLPKGFLEMLDGRGHIVKWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPC 382
L+PLP+G L G+ + P +V+ H H G +TL + EGVP + P
Sbjct: 279 LQPLPEGVLAA--GQFPLSAIXPACDVVVH--------HGGHGTTLTCLSEGVPQVSVPV 328
Query: 383 FGDQLVNARYVSHVWRVGLHLERKFERREIETAI 416
+ +AR + G +E +E+ +E+ +
Sbjct: 329 IAEVWDSARLLHA---AGAGVEVPWEQAGVESVL 359
>pdb|4G2T|A Chain A, Crystal Structure Of Streptomyces Sp. Sf2575
Glycosyltransferase Ssfs6, Complexed With Thymidine
Diphosphate
Length = 397
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 13/94 (13%)
Query: 323 LEPLPKGFLEMLDGRGHIVKWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPC 382
L+PLP+G L G+ + P +V+ H H G +TL + EGVP + P
Sbjct: 278 LQPLPEGVLAA--GQFPLSAIXPACDVVVH--------HGGHGTTLTCLSEGVPQVSVPV 327
Query: 383 FGDQLVNARYVSHVWRVGLHLERKFERREIETAI 416
+ +AR + G +E +E+ +E+ +
Sbjct: 328 IAEVWDSARLLH---AAGAGVEVPWEQAGVESVL 358
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 46/121 (38%), Gaps = 13/121 (10%)
Query: 268 SWLD-KQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPL 326
+WL + A+ ++Y++ G+ V GLA L P L V L +
Sbjct: 233 AWLSSRDTARPLVYLTLGTSSGGTVEVLRAAIDGLAGLDADVLVASGPSL--DVSGLGEV 290
Query: 327 PKGFLEMLDGRGHIVKWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQ 386
P + W PQ +L H V H G +TL ++ GVP + P GD
Sbjct: 291 PANV--------RLESWVPQAALLPH--VDLVVHHGGSGTTLGALGAGVPQLSFPWAGDS 340
Query: 387 L 387
Sbjct: 341 F 341
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 342 KWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQ 386
+W P VLAH TH + LE+ GVP++ P F +
Sbjct: 287 QWIPFHSVLAH--ARACLTHGTTGAVLEAFAAGVPLVLVPHFATE 329
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,618,394
Number of Sequences: 62578
Number of extensions: 479841
Number of successful extensions: 1041
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1010
Number of HSP's gapped (non-prelim): 23
length of query: 463
length of database: 14,973,337
effective HSP length: 102
effective length of query: 361
effective length of database: 8,590,381
effective search space: 3101127541
effective search space used: 3101127541
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)