Query 012474
Match_columns 463
No_of_seqs 132 out of 1224
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 03:01:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012474.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012474hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02410 UDP-glucoronosyl/UDP- 100.0 8E-67 1.7E-71 506.8 46.7 444 12-463 5-451 (451)
2 PLN02555 limonoid glucosyltran 100.0 2.7E-63 5.9E-68 483.6 43.4 439 13-462 6-469 (480)
3 PLN02173 UDP-glucosyl transfer 100.0 6.8E-63 1.5E-67 476.9 43.3 422 12-461 3-447 (449)
4 PLN02562 UDP-glycosyltransfera 100.0 6.4E-63 1.4E-67 481.1 43.2 432 12-461 4-448 (448)
5 PLN02448 UDP-glycosyltransfera 100.0 1.3E-62 2.8E-67 482.9 42.3 433 12-462 8-457 (459)
6 PLN02992 coniferyl-alcohol glu 100.0 1.3E-62 2.9E-67 477.4 41.7 429 14-462 5-469 (481)
7 PLN02207 UDP-glycosyltransfera 100.0 6.6E-62 1.4E-66 471.7 43.8 440 12-462 1-465 (468)
8 PLN02670 transferase, transfer 100.0 2.4E-62 5.2E-67 475.3 40.2 433 11-462 3-465 (472)
9 PLN02210 UDP-glucosyl transfer 100.0 7.7E-62 1.7E-66 473.9 41.7 427 11-461 5-454 (456)
10 PLN02863 UDP-glucoronosyl/UDP- 100.0 8.7E-62 1.9E-66 474.8 41.3 441 9-463 4-472 (477)
11 PLN00164 glucosyltransferase; 100.0 4.5E-61 9.7E-66 471.5 43.0 436 12-462 1-473 (480)
12 PLN02152 indole-3-acetate beta 100.0 1.1E-60 2.3E-65 462.4 42.8 426 13-460 2-454 (455)
13 PLN03004 UDP-glycosyltransfera 100.0 4.5E-61 9.7E-66 464.5 39.7 426 13-451 2-450 (451)
14 PLN02554 UDP-glycosyltransfera 100.0 8.4E-61 1.8E-65 471.6 42.4 435 14-462 2-478 (481)
15 PLN03015 UDP-glucosyl transfer 100.0 1.3E-60 2.9E-65 460.6 42.2 431 13-460 2-466 (470)
16 PLN03007 UDP-glucosyltransfera 100.0 1.6E-60 3.5E-65 470.3 42.4 437 12-463 3-481 (482)
17 PLN02208 glycosyltransferase f 100.0 1.5E-60 3.2E-65 461.8 40.4 419 12-463 2-440 (442)
18 PLN02534 UDP-glycosyltransfera 100.0 2.5E-60 5.4E-65 463.4 41.0 439 13-462 7-486 (491)
19 PLN02764 glycosyltransferase f 100.0 4.6E-60 1E-64 455.5 40.1 418 13-462 4-445 (453)
20 PLN02167 UDP-glycosyltransfera 100.0 2E-59 4.3E-64 461.2 41.8 441 12-462 1-472 (475)
21 PLN00414 glycosyltransferase f 100.0 3.7E-59 8E-64 452.6 39.6 417 13-462 3-440 (446)
22 PHA03392 egt ecdysteroid UDP-g 100.0 3.8E-54 8.3E-59 425.4 24.7 398 13-441 19-448 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 2E-56 4.4E-61 450.1 -12.0 390 16-441 2-425 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 4.6E-44 9.9E-49 349.2 30.1 374 20-461 1-391 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 1.3E-44 2.7E-49 354.9 24.7 363 15-440 1-386 (401)
26 COG1819 Glycosyl transferases, 100.0 2.8E-43 6.1E-48 339.0 16.5 388 14-460 1-399 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 1.1E-41 2.5E-46 343.1 15.4 401 14-441 5-438 (496)
28 PRK12446 undecaprenyldiphospho 100.0 4.3E-27 9.3E-32 224.0 26.1 336 16-462 3-351 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.9 8.8E-26 1.9E-30 214.5 23.0 305 15-419 1-317 (318)
30 COG0707 MurG UDP-N-acetylgluco 99.9 8.5E-24 1.9E-28 198.7 25.3 309 15-422 1-324 (357)
31 TIGR00661 MJ1255 conserved hyp 99.9 1.7E-22 3.8E-27 191.3 22.2 303 16-422 1-314 (321)
32 PRK00726 murG undecaprenyldiph 99.9 1.3E-19 2.8E-24 175.1 26.3 342 15-461 2-356 (357)
33 COG4671 Predicted glycosyl tra 99.8 2.9E-18 6.3E-23 153.3 23.4 331 11-421 6-364 (400)
34 cd03785 GT1_MurG MurG is an N- 99.8 3.6E-18 7.8E-23 164.6 24.4 314 16-422 1-324 (350)
35 TIGR01133 murG undecaprenyldip 99.8 3.1E-16 6.7E-21 151.0 28.9 307 15-422 1-321 (348)
36 TIGR00215 lpxB lipid-A-disacch 99.8 1.5E-17 3.2E-22 160.9 19.6 348 15-458 6-384 (385)
37 PRK00025 lpxB lipid-A-disaccha 99.7 4.9E-15 1.1E-19 144.4 22.0 105 347-460 256-375 (380)
38 PRK13609 diacylglycerol glucos 99.7 3.1E-15 6.8E-20 145.7 20.6 163 275-460 201-369 (380)
39 TIGR03590 PseG pseudaminic aci 99.7 3E-15 6.4E-20 138.2 16.4 104 276-392 170-278 (279)
40 TIGR03492 conserved hypothetic 99.6 6.4E-13 1.4E-17 128.8 26.7 351 23-458 5-394 (396)
41 PRK13608 diacylglycerol glucos 99.6 2.2E-13 4.7E-18 132.7 22.5 164 275-461 201-370 (391)
42 PF04101 Glyco_tran_28_C: Glyc 99.6 3.6E-17 7.7E-22 139.7 -5.4 135 278-422 1-144 (167)
43 PLN02605 monogalactosyldiacylg 99.5 1.1E-11 2.4E-16 120.6 25.7 135 274-422 204-347 (382)
44 cd03814 GT1_like_2 This family 99.5 1.6E-10 3.4E-15 111.6 30.5 112 334-460 245-363 (364)
45 PLN02871 UDP-sulfoquinovose:DA 99.4 3.4E-10 7.4E-15 113.2 32.0 154 277-458 263-429 (465)
46 COG3980 spsG Spore coat polysa 99.4 9.4E-11 2E-15 102.5 18.2 145 276-437 158-305 (318)
47 cd04962 GT1_like_5 This family 99.3 1.4E-09 3E-14 105.6 28.3 113 336-463 253-371 (371)
48 PF03033 Glyco_transf_28: Glyc 99.3 2.9E-13 6.3E-18 111.8 0.5 128 17-146 1-133 (139)
49 cd03818 GT1_ExpC_like This fam 99.3 5.6E-09 1.2E-13 102.4 29.8 80 336-423 281-367 (396)
50 cd03823 GT1_ExpE7_like This fa 99.3 9.7E-09 2.1E-13 98.8 29.3 80 335-422 242-329 (359)
51 PRK10307 putative glycosyl tra 99.3 5.6E-08 1.2E-12 95.9 34.4 162 276-462 228-407 (412)
52 cd03817 GT1_UGDG_like This fam 99.3 8.5E-09 1.9E-13 99.6 28.0 94 335-437 258-359 (374)
53 cd03794 GT1_wbuB_like This fam 99.3 5.8E-09 1.2E-13 101.4 26.9 329 16-423 1-366 (394)
54 cd03800 GT1_Sucrose_synthase T 99.2 6.6E-09 1.4E-13 101.9 26.0 80 336-423 283-369 (398)
55 cd03801 GT1_YqgM_like This fam 99.2 2E-08 4.2E-13 96.6 28.8 337 25-460 14-373 (374)
56 cd03808 GT1_cap1E_like This fa 99.2 1.7E-08 3.6E-13 96.8 27.2 315 16-423 1-330 (359)
57 PRK14089 ipid-A-disaccharide s 99.2 1.3E-09 2.8E-14 102.7 18.5 159 276-458 167-346 (347)
58 cd03816 GT1_ALG1_like This fam 99.2 2.2E-08 4.8E-13 98.5 27.3 343 13-436 2-399 (415)
59 cd03825 GT1_wcfI_like This fam 99.2 6.3E-08 1.4E-12 93.7 28.7 116 334-463 242-365 (365)
60 PRK05749 3-deoxy-D-manno-octul 99.1 2.2E-08 4.8E-13 99.1 23.4 71 347-423 314-389 (425)
61 TIGR03449 mycothiol_MshA UDP-N 99.1 1.5E-07 3.3E-12 92.6 28.9 110 336-461 283-400 (405)
62 cd03798 GT1_wlbH_like This fam 99.1 2.5E-07 5.4E-12 89.2 29.8 113 335-463 258-377 (377)
63 cd03820 GT1_amsD_like This fam 99.1 1.9E-07 4E-12 89.1 27.9 92 336-435 235-333 (348)
64 cd03795 GT1_like_4 This family 99.0 2.8E-07 6.1E-12 88.8 27.8 139 276-434 190-345 (357)
65 cd05844 GT1_like_7 Glycosyltra 99.0 3.6E-07 7.8E-12 88.5 27.0 81 335-423 244-337 (367)
66 PF04007 DUF354: Protein of un 99.0 6.9E-08 1.5E-12 90.3 19.8 301 15-420 1-308 (335)
67 cd03796 GT1_PIG-A_like This fa 99.0 6.6E-07 1.4E-11 87.8 27.6 112 335-462 249-367 (398)
68 cd03821 GT1_Bme6_like This fam 99.0 2.1E-06 4.5E-11 82.8 29.9 106 335-457 261-374 (375)
69 cd03822 GT1_ecORF704_like This 99.0 1E-06 2.2E-11 85.0 27.6 109 335-460 246-365 (366)
70 TIGR02468 sucrsPsyn_pln sucros 98.9 2.1E-06 4.5E-11 90.6 30.5 395 11-461 166-669 (1050)
71 cd03819 GT1_WavL_like This fam 98.9 9.7E-07 2.1E-11 85.0 25.9 148 276-437 184-347 (355)
72 cd03805 GT1_ALG2_like This fam 98.9 1.9E-06 4.2E-11 84.3 28.3 90 335-433 279-376 (392)
73 cd03786 GT1_UDP-GlcNAc_2-Epime 98.9 4.6E-07 1E-11 87.7 21.6 159 275-460 197-362 (363)
74 cd03811 GT1_WabH_like This fam 98.9 8.1E-07 1.8E-11 84.8 22.8 79 336-422 246-332 (353)
75 TIGR02472 sucr_P_syn_N sucrose 98.8 2.9E-06 6.4E-11 84.2 26.7 112 335-460 316-438 (439)
76 cd03799 GT1_amsK_like This is 98.8 7.3E-06 1.6E-10 78.8 27.6 81 335-423 235-328 (355)
77 cd04955 GT1_like_6 This family 98.8 4.9E-06 1.1E-10 80.3 26.4 155 280-460 196-362 (363)
78 cd03802 GT1_AviGT4_like This f 98.8 1.8E-06 3.9E-11 82.4 22.7 152 279-460 173-334 (335)
79 TIGR02149 glgA_Coryne glycogen 98.8 6.9E-06 1.5E-10 80.3 26.7 163 277-462 201-386 (388)
80 TIGR00236 wecB UDP-N-acetylglu 98.8 7.2E-07 1.6E-11 86.4 19.4 157 276-462 197-363 (365)
81 cd04951 GT1_WbdM_like This fam 98.7 1.1E-05 2.3E-10 77.9 26.7 110 336-461 245-359 (360)
82 PRK09922 UDP-D-galactose:(gluc 98.7 1.9E-06 4.1E-11 83.3 21.3 133 277-423 180-325 (359)
83 cd03807 GT1_WbnK_like This fam 98.7 1.4E-05 3.1E-10 76.7 27.0 109 336-460 251-364 (365)
84 COG0763 LpxB Lipid A disacchar 98.7 3.3E-06 7.1E-11 78.5 20.7 348 14-461 1-380 (381)
85 TIGR03087 stp1 sugar transfera 98.7 2.5E-06 5.3E-11 83.7 21.4 109 336-461 280-395 (397)
86 TIGR03088 stp2 sugar transfera 98.7 5.6E-06 1.2E-10 80.5 23.7 113 336-462 255-372 (374)
87 PRK01021 lpxB lipid-A-disaccha 98.7 7.1E-06 1.5E-10 81.6 24.1 332 14-440 226-590 (608)
88 PRK15427 colanic acid biosynth 98.7 3.3E-05 7.1E-10 75.8 28.7 115 335-463 278-406 (406)
89 PLN02275 transferase, transfer 98.7 1.3E-05 2.7E-10 77.9 25.3 320 13-420 3-371 (371)
90 PLN02846 digalactosyldiacylgly 98.7 8.3E-06 1.8E-10 79.9 22.7 98 340-460 288-389 (462)
91 COG1519 KdtA 3-deoxy-D-manno-o 98.7 3.4E-05 7.3E-10 72.7 25.6 310 22-436 56-401 (419)
92 PF02684 LpxB: Lipid-A-disacch 98.6 4.8E-06 1E-10 79.2 20.2 192 238-451 151-366 (373)
93 cd03809 GT1_mtfB_like This fam 98.6 1.8E-05 3.9E-10 76.2 23.6 80 334-423 251-337 (365)
94 cd03804 GT1_wbaZ_like This fam 98.5 7.6E-06 1.6E-10 78.8 19.2 125 279-423 197-327 (351)
95 KOG3349 Predicted glycosyltran 98.5 3.8E-07 8.2E-12 72.1 8.0 129 276-418 3-143 (170)
96 cd03806 GT1_ALG11_like This fa 98.5 1.2E-05 2.6E-10 79.2 20.6 80 335-423 304-393 (419)
97 TIGR02470 sucr_synth sucrose s 98.5 0.00027 5.8E-09 73.4 29.9 79 336-420 619-707 (784)
98 PLN00142 sucrose synthase 98.5 7E-05 1.5E-09 77.7 25.6 89 358-459 670-767 (815)
99 PRK15179 Vi polysaccharide bio 98.5 0.00024 5.2E-09 73.5 29.4 113 335-461 573-692 (694)
100 cd03812 GT1_CapH_like This fam 98.4 6.6E-05 1.4E-09 72.3 21.4 80 335-423 248-332 (358)
101 cd03792 GT1_Trehalose_phosphor 98.4 0.00035 7.6E-09 67.9 26.0 110 336-462 252-371 (372)
102 TIGR02095 glgA glycogen/starch 98.3 0.00011 2.4E-09 73.8 21.2 168 276-463 290-473 (473)
103 PRK00654 glgA glycogen synthas 98.3 0.00012 2.6E-09 73.3 21.0 170 276-462 281-462 (466)
104 PLN02949 transferase, transfer 98.3 0.00033 7.1E-09 69.6 22.8 112 335-462 334-456 (463)
105 PRK10125 putative glycosyl tra 98.3 0.0024 5.3E-08 62.5 28.7 154 279-463 243-405 (405)
106 PF02350 Epimerase_2: UDP-N-ac 98.2 9.3E-06 2E-10 77.4 11.0 158 274-461 178-346 (346)
107 cd03791 GT1_Glycogen_synthase_ 98.2 0.00022 4.7E-09 71.9 20.9 117 335-461 350-475 (476)
108 TIGR03568 NeuC_NnaA UDP-N-acet 98.2 0.00017 3.8E-09 69.5 18.3 129 276-421 201-338 (365)
109 cd04950 GT1_like_1 Glycosyltra 98.2 0.002 4.3E-08 62.6 25.7 108 336-462 254-371 (373)
110 PLN02316 synthase/transferase 98.2 0.0014 2.9E-08 70.1 25.9 118 336-462 900-1033(1036)
111 PRK10017 colanic acid biosynth 98.1 0.011 2.4E-07 57.9 29.5 178 267-460 225-422 (426)
112 cd03813 GT1_like_3 This family 98.1 0.00088 1.9E-08 67.3 22.1 111 335-459 353-473 (475)
113 cd04949 GT1_gtfA_like This fam 98.0 0.00032 6.9E-09 68.1 17.7 100 335-439 260-363 (372)
114 TIGR02918 accessory Sec system 98.0 0.0023 4.9E-08 64.3 23.3 114 335-462 375-499 (500)
115 PRK15484 lipopolysaccharide 1, 98.0 0.00025 5.4E-09 69.0 15.2 115 334-462 255-377 (380)
116 PF13844 Glyco_transf_41: Glyc 98.0 0.00015 3.2E-09 70.6 13.2 136 274-422 282-430 (468)
117 COG0381 WecB UDP-N-acetylgluco 97.9 0.00029 6.2E-09 66.0 14.2 157 275-461 203-369 (383)
118 PRK15490 Vi polysaccharide bio 97.9 0.021 4.5E-07 57.1 26.5 114 335-462 454-575 (578)
119 cd04946 GT1_AmsK_like This fam 97.7 0.0011 2.3E-08 65.3 14.8 111 336-457 289-406 (407)
120 PF00534 Glycos_transf_1: Glyc 97.7 0.00017 3.7E-09 61.5 7.9 81 334-422 71-158 (172)
121 COG5017 Uncharacterized conser 97.7 0.00029 6.3E-09 55.0 8.0 124 279-421 2-141 (161)
122 PLN02501 digalactosyldiacylgly 97.6 0.011 2.3E-07 60.3 19.9 75 338-423 603-682 (794)
123 TIGR02193 heptsyl_trn_I lipopo 97.4 0.0041 8.9E-08 59.0 14.6 131 275-420 178-319 (319)
124 PRK09814 beta-1,6-galactofuran 97.3 0.0012 2.7E-08 62.9 9.7 111 335-459 206-332 (333)
125 cd01635 Glycosyltransferase_GT 97.3 0.021 4.5E-07 50.6 17.2 48 336-385 161-216 (229)
126 COG1817 Uncharacterized protei 97.3 0.061 1.3E-06 48.9 19.0 108 23-146 8-116 (346)
127 PF13692 Glyco_trans_1_4: Glyc 97.2 0.0007 1.5E-08 55.1 5.8 127 278-422 3-135 (135)
128 KOG4626 O-linked N-acetylgluco 97.1 0.0054 1.2E-07 60.4 11.6 151 274-442 756-918 (966)
129 PF13477 Glyco_trans_4_2: Glyc 96.9 0.013 2.9E-07 47.7 10.5 104 16-143 1-108 (139)
130 PRK10422 lipopolysaccharide co 96.7 0.21 4.5E-06 48.1 19.0 108 12-139 3-113 (352)
131 PRK10916 ADP-heptose:LPS hepto 96.6 0.079 1.7E-06 50.9 15.0 103 15-139 1-106 (348)
132 TIGR02201 heptsyl_trn_III lipo 96.6 0.26 5.7E-06 47.2 18.6 105 16-139 1-108 (344)
133 PF06722 DUF1205: Protein of u 96.5 0.0027 5.9E-08 47.8 3.4 64 264-330 28-96 (97)
134 PHA01633 putative glycosyl tra 96.4 0.029 6.4E-07 53.0 10.5 101 335-439 200-324 (335)
135 PF06258 Mito_fiss_Elm1: Mitoc 96.3 0.26 5.7E-06 46.1 16.2 58 345-405 221-282 (311)
136 COG0859 RfaF ADP-heptose:LPS h 96.3 0.29 6.3E-06 46.7 16.8 106 14-140 1-108 (334)
137 COG3914 Spy Predicted O-linked 96.1 0.099 2.2E-06 51.6 12.4 104 275-388 428-543 (620)
138 TIGR02195 heptsyl_trn_II lipop 96.1 0.31 6.6E-06 46.5 16.0 102 16-139 1-105 (334)
139 PRK14098 glycogen synthase; Pr 96.0 0.059 1.3E-06 54.3 11.0 116 332-462 358-485 (489)
140 PRK10964 ADP-heptose:LPS hepto 96.0 0.14 3E-06 48.6 12.9 132 276-421 178-321 (322)
141 PF12000 Glyco_trans_4_3: Gkyc 96.0 0.058 1.3E-06 45.4 8.9 93 40-143 1-97 (171)
142 PF13524 Glyco_trans_1_2: Glyc 96.0 0.054 1.2E-06 40.5 8.1 83 361-458 9-92 (92)
143 cd03789 GT1_LPS_heptosyltransf 95.9 0.62 1.3E-05 43.1 16.5 102 16-139 1-105 (279)
144 PF13579 Glyco_trans_4_4: Glyc 95.6 0.031 6.6E-07 46.4 5.9 98 29-143 5-105 (160)
145 PF10093 DUF2331: Uncharacteri 95.5 2.4 5.3E-05 40.4 20.3 86 289-379 192-287 (374)
146 PHA01630 putative group 1 glyc 95.1 0.58 1.3E-05 44.5 13.4 111 343-462 197-330 (331)
147 COG3660 Predicted nucleoside-d 94.8 2 4.4E-05 38.3 14.7 78 295-380 187-271 (329)
148 PF01975 SurE: Survival protei 93.8 0.98 2.1E-05 39.2 10.7 41 15-56 1-41 (196)
149 COG4370 Uncharacterized protei 93.5 0.17 3.6E-06 45.9 5.5 92 342-440 301-395 (412)
150 TIGR02400 trehalose_OtsA alpha 93.3 0.57 1.2E-05 46.7 9.8 104 342-462 342-456 (456)
151 PRK13932 stationary phase surv 93.2 3.2 6.9E-05 37.5 13.3 44 11-56 2-45 (257)
152 PLN02939 transferase, transfer 93.1 1.6 3.5E-05 46.8 13.0 113 336-461 837-965 (977)
153 PF08660 Alg14: Oligosaccharid 93.0 0.54 1.2E-05 39.8 7.7 110 21-143 4-130 (170)
154 PF13439 Glyco_transf_4: Glyco 92.4 0.88 1.9E-05 38.2 8.6 29 25-53 12-40 (177)
155 PRK14099 glycogen synthase; Pr 91.6 2.1 4.6E-05 43.1 11.4 115 335-462 349-478 (485)
156 COG1618 Predicted nucleotide k 90.2 1.2 2.6E-05 36.8 6.5 58 12-70 3-60 (179)
157 TIGR03713 acc_sec_asp1 accesso 89.7 0.72 1.6E-05 46.7 6.1 92 336-440 409-507 (519)
158 TIGR00715 precor6x_red precorr 88.7 4.8 0.0001 36.6 10.0 33 15-52 1-33 (256)
159 PLN03063 alpha,alpha-trehalose 88.5 3.9 8.4E-05 43.9 10.8 102 347-461 370-476 (797)
160 COG4394 Uncharacterized protei 88.0 16 0.00034 33.3 12.3 118 339-462 241-367 (370)
161 PRK02261 methylaspartate mutas 87.7 1.2 2.7E-05 36.1 5.1 40 12-51 1-40 (137)
162 cd03788 GT1_TPS Trehalose-6-Ph 87.2 1.8 4E-05 43.3 7.1 102 342-460 347-459 (460)
163 PF02951 GSH-S_N: Prokaryotic 86.5 1.2 2.5E-05 35.1 4.1 37 15-51 1-40 (119)
164 PRK13934 stationary phase surv 86.3 21 0.00046 32.5 12.5 40 15-56 1-40 (266)
165 COG2910 Putative NADH-flavin r 85.9 0.92 2E-05 38.3 3.4 34 15-52 1-34 (211)
166 PRK13933 stationary phase surv 85.8 26 0.00057 31.7 12.9 40 15-56 1-40 (253)
167 COG0496 SurE Predicted acid ph 84.9 6.7 0.00015 35.2 8.6 41 15-57 1-41 (252)
168 PRK13935 stationary phase surv 84.0 33 0.00071 31.1 12.7 40 15-56 1-40 (253)
169 COG0438 RfaG Glycosyltransfera 82.6 9 0.0002 35.7 9.5 79 336-422 257-342 (381)
170 PRK00346 surE 5'(3')-nucleotid 82.6 37 0.00081 30.7 12.8 40 15-56 1-40 (250)
171 PF05159 Capsule_synth: Capsul 82.3 6.2 0.00013 36.2 7.8 40 340-382 187-226 (269)
172 PF01075 Glyco_transf_9: Glyco 81.3 3.4 7.4E-05 37.3 5.7 94 275-380 104-208 (247)
173 PRK05986 cob(I)alamin adenolsy 81.2 30 0.00065 29.8 10.8 101 12-124 20-126 (191)
174 TIGR00087 surE 5'/3'-nucleotid 80.9 25 0.00054 31.7 10.8 40 15-56 1-40 (244)
175 cd02067 B12-binding B12 bindin 80.0 2.8 6E-05 33.0 4.1 36 16-51 1-36 (119)
176 PF04464 Glyphos_transf: CDP-G 80.0 1.2 2.7E-05 43.1 2.4 110 336-461 252-368 (369)
177 PF02441 Flavoprotein: Flavopr 79.9 3.1 6.6E-05 33.4 4.3 36 15-51 1-36 (129)
178 TIGR02919 accessory Sec system 78.4 7.4 0.00016 38.5 7.2 92 336-437 328-424 (438)
179 COG1703 ArgK Putative periplas 78.3 28 0.0006 32.2 10.1 46 9-54 46-91 (323)
180 PRK02797 4-alpha-L-fucosyltran 77.9 18 0.00039 33.6 8.9 136 278-420 146-292 (322)
181 PF12146 Hydrolase_4: Putative 76.9 4.8 0.0001 29.0 4.1 37 14-50 15-51 (79)
182 KOG1250 Threonine/serine dehyd 76.3 40 0.00086 32.4 10.7 101 295-423 206-317 (457)
183 KOG1111 N-acetylglucosaminyltr 74.9 57 0.0012 31.0 11.2 45 334-380 250-301 (426)
184 KOG2941 Beta-1,4-mannosyltrans 74.3 81 0.0017 29.9 22.4 129 8-146 6-141 (444)
185 PF04127 DFP: DNA / pantothena 73.0 3 6.6E-05 35.8 2.6 39 14-52 3-53 (185)
186 PF02571 CbiJ: Precorrin-6x re 72.8 18 0.00038 32.8 7.6 29 15-49 1-29 (249)
187 PRK08305 spoVFB dipicolinate s 72.4 5.6 0.00012 34.4 4.1 40 13-52 4-43 (196)
188 cd03793 GT1_Glycogen_synthase_ 72.4 10 0.00023 38.5 6.5 75 346-423 468-553 (590)
189 PF07429 Glyco_transf_56: 4-al 72.4 31 0.00067 32.6 9.1 81 336-421 245-332 (360)
190 cd00561 CobA_CobO_BtuR ATP:cor 71.5 48 0.001 27.7 9.3 97 16-124 4-106 (159)
191 TIGR02398 gluc_glyc_Psyn gluco 70.8 1.2E+02 0.0027 30.5 13.8 107 339-462 365-482 (487)
192 PF02310 B12-binding: B12 bind 68.0 10 0.00023 29.6 4.6 36 15-50 1-36 (121)
193 TIGR02015 BchY chlorophyllide 67.0 49 0.0011 32.7 9.9 95 15-141 286-380 (422)
194 TIGR00708 cobA cob(I)alamin ad 66.7 68 0.0015 27.2 9.3 97 15-124 6-108 (173)
195 PRK09620 hypothetical protein; 66.4 21 0.00045 31.9 6.6 39 13-51 2-52 (229)
196 COG0003 ArsA Predicted ATPase 66.3 51 0.0011 31.1 9.4 40 15-54 2-42 (322)
197 TIGR03029 EpsG chain length de 65.8 84 0.0018 28.8 10.8 40 12-51 100-141 (274)
198 PRK06732 phosphopantothenate-- 65.2 9.2 0.0002 34.2 4.1 37 15-51 1-49 (229)
199 PRK08057 cobalt-precorrin-6x r 65.1 53 0.0011 29.7 9.0 32 15-51 3-34 (248)
200 COG1663 LpxK Tetraacyldisaccha 64.2 25 0.00055 33.0 6.8 36 19-54 54-89 (336)
201 PRK14099 glycogen synthase; Pr 63.9 11 0.00024 37.9 5.0 41 12-52 1-47 (485)
202 cd07039 TPP_PYR_POX Pyrimidine 63.6 87 0.0019 26.2 9.7 29 352-382 63-97 (164)
203 COG1797 CobB Cobyrinic acid a, 63.1 14 0.00029 36.0 4.9 27 22-48 9-35 (451)
204 PRK12475 thiamine/molybdopteri 62.6 16 0.00036 34.7 5.5 34 13-51 23-57 (338)
205 TIGR01425 SRP54_euk signal rec 62.5 37 0.0008 33.5 7.9 41 14-54 100-140 (429)
206 PRK05632 phosphate acetyltrans 61.2 1.2E+02 0.0026 32.2 12.1 102 16-144 4-116 (684)
207 PRK14501 putative bifunctional 61.0 21 0.00045 38.2 6.5 110 340-462 346-462 (726)
208 PF02606 LpxK: Tetraacyldisacc 60.4 30 0.00066 32.7 6.8 35 20-54 43-77 (326)
209 cd02070 corrinoid_protein_B12- 60.4 18 0.00038 31.6 5.0 39 13-51 81-119 (201)
210 PRK13931 stationary phase surv 60.3 1.4E+02 0.003 27.3 10.8 27 30-56 15-44 (261)
211 PRK13982 bifunctional SbtC-lik 60.3 19 0.00041 36.0 5.6 54 12-68 254-319 (475)
212 TIGR02370 pyl_corrinoid methyl 59.9 19 0.00041 31.3 5.1 40 12-51 82-121 (197)
213 PLN02470 acetolactate synthase 58.9 27 0.00058 36.2 6.8 91 282-382 2-110 (585)
214 COG0541 Ffh Signal recognition 58.6 40 0.00087 32.9 7.2 45 11-55 97-141 (451)
215 cd02071 MM_CoA_mut_B12_BD meth 58.4 18 0.00038 28.6 4.3 36 16-51 1-36 (122)
216 TIGR02852 spore_dpaB dipicolin 58.0 14 0.00029 31.8 3.7 37 16-52 2-38 (187)
217 PF02374 ArsA_ATPase: Anion-tr 57.2 15 0.00033 34.4 4.2 40 15-54 1-41 (305)
218 PF01210 NAD_Gly3P_dh_N: NAD-d 56.5 8.7 0.00019 31.9 2.3 31 16-51 1-31 (157)
219 COG2185 Sbm Methylmalonyl-CoA 56.2 20 0.00044 29.0 4.2 39 12-50 10-48 (143)
220 cd01980 Chlide_reductase_Y Chl 56.2 1E+02 0.0022 30.4 10.1 95 16-142 282-376 (416)
221 PRK11519 tyrosine kinase; Prov 56.2 1.9E+02 0.0042 30.9 12.7 40 13-52 524-565 (719)
222 PRK05920 aromatic acid decarbo 56.2 20 0.00042 31.3 4.4 38 14-52 3-40 (204)
223 PF00731 AIRC: AIR carboxylase 56.1 1.1E+02 0.0025 25.1 9.4 136 278-441 2-148 (150)
224 PLN02939 transferase, transfer 55.7 24 0.00051 38.4 5.7 42 12-53 479-526 (977)
225 COG2109 BtuR ATP:corrinoid ade 55.5 1.3E+02 0.0029 25.8 9.0 99 14-124 28-133 (198)
226 PRK10867 signal recognition pa 54.2 52 0.0011 32.5 7.5 42 14-55 100-142 (433)
227 PRK01175 phosphoribosylformylg 54.0 1.8E+02 0.0038 26.6 11.1 57 13-72 2-58 (261)
228 PRK06249 2-dehydropantoate 2-r 54.0 17 0.00036 34.3 4.0 36 12-52 3-38 (313)
229 PRK01077 cobyrinic acid a,c-di 53.7 45 0.00097 33.3 7.1 36 15-50 3-40 (451)
230 cd02037 MRP-like MRP (Multiple 53.3 51 0.0011 27.5 6.6 34 21-54 7-40 (169)
231 PRK13789 phosphoribosylamine-- 53.1 46 0.00099 33.0 7.0 36 13-53 3-38 (426)
232 PRK04946 hypothetical protein; 52.4 12 0.00027 31.8 2.5 56 295-368 113-169 (181)
233 TIGR00682 lpxK tetraacyldisacc 52.3 42 0.00092 31.5 6.3 35 20-54 36-70 (311)
234 cd01965 Nitrogenase_MoFe_beta_ 52.2 56 0.0012 32.4 7.5 100 13-142 298-397 (428)
235 TIGR00959 ffh signal recogniti 51.4 63 0.0014 31.9 7.6 42 14-55 99-141 (428)
236 TIGR00347 bioD dethiobiotin sy 51.4 1.2E+02 0.0026 25.1 8.5 29 21-49 5-33 (166)
237 PRK06849 hypothetical protein; 50.8 31 0.00068 33.6 5.5 36 13-52 3-38 (389)
238 cd02032 Bchl_like This family 50.1 28 0.0006 31.9 4.7 39 15-53 1-39 (267)
239 TIGR01281 DPOR_bchL light-inde 50.1 28 0.00061 31.8 4.8 39 15-53 1-39 (268)
240 COG2861 Uncharacterized protei 49.9 1.1E+02 0.0024 27.3 7.9 36 97-139 140-178 (250)
241 PF09314 DUF1972: Domain of un 49.4 34 0.00073 29.4 4.7 39 31-69 23-62 (185)
242 cd02069 methionine_synthase_B1 49.4 36 0.00077 30.0 5.1 39 13-51 87-125 (213)
243 CHL00072 chlL photochlorophyll 48.8 39 0.00084 31.4 5.5 39 15-53 1-39 (290)
244 PRK13768 GTPase; Provisional 48.8 48 0.001 30.1 6.0 37 16-52 4-40 (253)
245 PRK07313 phosphopantothenoylcy 48.8 23 0.0005 30.3 3.7 37 15-52 2-38 (182)
246 PF00289 CPSase_L_chain: Carba 48.4 19 0.00041 27.9 2.8 72 290-373 10-91 (110)
247 PRK00784 cobyric acid synthase 48.1 1.1E+02 0.0023 31.1 8.9 34 17-50 5-39 (488)
248 PRK06522 2-dehydropantoate 2-r 48.0 21 0.00046 33.2 3.7 32 15-51 1-32 (304)
249 COG3195 Uncharacterized protei 47.7 81 0.0018 26.2 6.3 94 346-440 65-164 (176)
250 PRK14098 glycogen synthase; Pr 47.7 32 0.00068 34.8 5.1 40 13-52 4-49 (489)
251 COG0052 RpsB Ribosomal protein 47.5 37 0.0008 30.3 4.7 34 113-146 156-191 (252)
252 TIGR01285 nifN nitrogenase mol 47.0 1.3E+02 0.0029 29.8 9.2 89 13-141 310-398 (432)
253 PRK12446 undecaprenyldiphospho 46.2 58 0.0012 31.3 6.4 95 277-379 3-119 (352)
254 PRK00207 sulfur transfer compl 46.1 48 0.001 26.5 4.9 36 15-50 1-40 (128)
255 COG2099 CobK Precorrin-6x redu 45.9 1.4E+02 0.003 27.0 8.1 94 14-142 2-101 (257)
256 cd01974 Nitrogenase_MoFe_beta 45.5 1.5E+02 0.0033 29.4 9.5 96 13-142 302-403 (435)
257 PF06506 PrpR_N: Propionate ca 45.4 21 0.00046 30.3 3.0 69 351-422 33-124 (176)
258 PF02572 CobA_CobO_BtuR: ATP:c 45.4 71 0.0015 27.0 6.0 99 14-124 3-107 (172)
259 PF07015 VirC1: VirC1 protein; 45.2 52 0.0011 29.3 5.3 42 15-56 1-44 (231)
260 COG1484 DnaC DNA replication p 44.8 43 0.00094 30.4 5.0 39 13-51 104-142 (254)
261 KOG0081 GTPase Rab27, small G 44.5 30 0.00066 28.4 3.4 36 112-147 123-168 (219)
262 PRK12315 1-deoxy-D-xylulose-5- 44.3 2.2E+02 0.0048 29.5 10.6 52 360-420 524-580 (581)
263 PRK05595 replicative DNA helic 44.2 66 0.0014 32.0 6.7 37 16-52 203-240 (444)
264 PRK06719 precorrin-2 dehydroge 44.2 34 0.00073 28.5 3.9 35 12-51 11-45 (157)
265 PF08323 Glyco_transf_5: Starc 43.4 22 0.00048 32.1 2.9 24 29-52 20-43 (245)
266 KOG0780 Signal recognition par 43.4 76 0.0016 30.6 6.3 43 12-54 99-141 (483)
267 cd07038 TPP_PYR_PDC_IPDC_like 43.4 83 0.0018 26.2 6.2 25 358-382 63-93 (162)
268 PRK08760 replicative DNA helic 42.8 1E+02 0.0022 31.0 7.8 39 14-52 229-268 (476)
269 TIGR00421 ubiX_pad polyprenyl 42.7 26 0.00056 30.0 3.0 35 17-52 2-36 (181)
270 PRK06321 replicative DNA helic 42.6 1.1E+02 0.0023 30.8 7.8 36 17-52 229-265 (472)
271 KOG3339 Predicted glycosyltran 42.4 1.8E+02 0.004 24.8 7.7 26 15-41 39-64 (211)
272 cd01141 TroA_d Periplasmic bin 42.4 37 0.00081 28.9 4.1 39 99-142 60-100 (186)
273 PF04244 DPRP: Deoxyribodipyri 42.3 25 0.00055 31.2 3.0 25 27-51 47-71 (224)
274 TIGR01007 eps_fam capsular exo 42.2 51 0.0011 28.6 5.0 42 12-53 14-57 (204)
275 COG0801 FolK 7,8-dihydro-6-hyd 42.1 53 0.0012 27.3 4.6 29 278-306 3-31 (160)
276 PF03721 UDPG_MGDP_dh_N: UDP-g 42.1 40 0.00087 28.9 4.2 32 15-51 1-32 (185)
277 TIGR02113 coaC_strep phosphopa 42.0 40 0.00087 28.7 4.1 36 16-52 2-37 (177)
278 TIGR00379 cobB cobyrinic acid 41.6 1.3E+02 0.0028 30.0 8.3 34 17-50 2-36 (449)
279 cd03114 ArgK-like The function 40.9 2E+02 0.0043 23.5 11.0 36 17-52 2-37 (148)
280 PF06925 MGDG_synth: Monogalac 40.6 62 0.0013 27.1 5.1 24 27-50 1-25 (169)
281 PRK12921 2-dehydropantoate 2-r 40.6 32 0.0007 32.1 3.7 31 15-50 1-31 (305)
282 COG0569 TrkA K+ transport syst 40.5 35 0.00076 30.3 3.7 33 15-52 1-33 (225)
283 COG0552 FtsY Signal recognitio 40.4 83 0.0018 29.7 6.1 43 12-54 137-179 (340)
284 PRK04148 hypothetical protein; 40.3 60 0.0013 26.1 4.6 35 12-52 15-49 (134)
285 PRK06029 3-octaprenyl-4-hydrox 40.1 40 0.00086 28.9 3.8 37 15-52 2-39 (185)
286 PF02702 KdpD: Osmosensitive K 40.0 50 0.0011 28.7 4.2 40 12-51 3-42 (211)
287 PRK14619 NAD(P)H-dependent gly 40.0 38 0.00083 31.8 4.1 34 13-51 3-36 (308)
288 PRK11914 diacylglycerol kinase 39.4 54 0.0012 30.7 5.0 81 278-382 12-96 (306)
289 PRK12448 dihydroxy-acid dehydr 39.3 2.3E+02 0.005 29.3 9.4 47 96-146 98-148 (615)
290 COG3349 Uncharacterized conser 39.2 32 0.00069 34.3 3.4 33 15-52 1-33 (485)
291 KOG0853 Glycosyltransferase [C 39.1 40 0.00086 33.7 4.0 58 366-431 381-439 (495)
292 PRK05784 phosphoribosylamine-- 38.8 2.6E+02 0.0056 28.3 9.8 31 15-50 1-33 (486)
293 PRK06904 replicative DNA helic 38.7 1.1E+02 0.0024 30.7 7.2 37 16-52 223-260 (472)
294 PRK13604 luxD acyl transferase 38.3 67 0.0014 30.1 5.2 37 13-49 35-71 (307)
295 PRK13059 putative lipid kinase 38.1 1E+02 0.0022 28.7 6.6 29 352-382 56-90 (295)
296 cd02034 CooC The accessory pro 38.0 80 0.0017 24.6 5.0 37 16-52 1-37 (116)
297 PRK07688 thiamine/molybdopteri 37.9 58 0.0013 31.1 4.9 34 13-51 23-57 (339)
298 PRK13869 plasmid-partitioning 37.6 57 0.0012 32.0 5.0 41 13-53 119-161 (405)
299 COG0299 PurN Folate-dependent 37.3 1.7E+02 0.0036 25.3 6.9 120 290-437 64-186 (200)
300 cd07025 Peptidase_S66 LD-Carbo 37.2 76 0.0016 29.4 5.5 75 288-383 45-121 (282)
301 COG0205 PfkA 6-phosphofructoki 37.1 1.5E+02 0.0033 28.3 7.4 115 14-140 2-124 (347)
302 TIGR03646 YtoQ_fam YtoQ family 37.0 2.2E+02 0.0047 22.8 9.0 129 278-421 2-144 (144)
303 PLN00016 RNA-binding protein; 36.9 43 0.00093 32.4 4.0 36 14-51 52-89 (378)
304 PRK06270 homoserine dehydrogen 36.9 2.6E+02 0.0056 26.7 9.2 58 345-403 80-149 (341)
305 PRK14569 D-alanyl-alanine synt 36.8 69 0.0015 29.8 5.2 39 12-50 1-43 (296)
306 COG2210 Peroxiredoxin family p 36.7 73 0.0016 25.6 4.4 36 15-50 3-39 (137)
307 PRK02399 hypothetical protein; 36.6 1.5E+02 0.0034 28.8 7.4 92 275-383 185-280 (406)
308 TIGR00750 lao LAO/AO transport 36.6 3.6E+02 0.0077 25.1 10.3 41 13-53 33-73 (300)
309 PF01695 IstB_IS21: IstB-like 36.6 70 0.0015 27.2 4.8 39 12-50 45-83 (178)
310 cd07035 TPP_PYR_POX_like Pyrim 36.5 2.3E+02 0.0051 23.0 8.9 29 353-383 60-94 (155)
311 PF00551 Formyl_trans_N: Formy 36.5 81 0.0018 26.8 5.2 33 15-50 1-35 (181)
312 TIGR00460 fmt methionyl-tRNA f 36.4 52 0.0011 31.0 4.3 33 15-52 1-33 (313)
313 PRK03708 ppnK inorganic polyph 36.0 41 0.00088 31.1 3.5 29 352-382 57-88 (277)
314 TIGR00521 coaBC_dfp phosphopan 35.9 50 0.0011 32.2 4.2 39 13-52 2-40 (390)
315 TIGR01501 MthylAspMutase methy 35.7 79 0.0017 25.5 4.6 38 14-51 1-38 (134)
316 PRK13973 thymidylate kinase; P 35.5 1.7E+02 0.0037 25.6 7.2 39 13-51 2-40 (213)
317 PF01372 Melittin: Melittin; 35.5 7.2 0.00016 20.6 -0.9 17 363-379 1-17 (26)
318 PF13460 NAD_binding_10: NADH( 35.4 42 0.00091 28.3 3.3 43 22-68 4-46 (183)
319 PRK02649 ppnK inorganic polyph 35.1 55 0.0012 30.7 4.2 29 351-381 67-99 (305)
320 PRK09841 cryptic autophosphory 34.9 5.1E+02 0.011 27.8 11.9 41 13-53 529-571 (726)
321 PF06564 YhjQ: YhjQ protein; 34.9 65 0.0014 29.0 4.4 37 15-51 1-39 (243)
322 PRK13234 nifH nitrogenase redu 34.8 80 0.0017 29.4 5.3 41 13-53 2-43 (295)
323 TIGR00147 lipid kinase, YegS/R 34.8 1.4E+02 0.003 27.7 6.9 29 352-382 57-91 (293)
324 cd01075 NAD_bind_Leu_Phe_Val_D 34.8 57 0.0012 28.4 4.0 34 10-48 24-57 (200)
325 COG2084 MmsB 3-hydroxyisobutyr 34.6 55 0.0012 30.3 4.0 32 15-51 1-32 (286)
326 PRK05647 purN phosphoribosylgl 34.5 1.6E+02 0.0035 25.6 6.8 34 15-51 2-37 (200)
327 cd00672 CysRS_core catalytic c 34.5 2.2E+02 0.0048 25.0 7.7 93 25-139 36-131 (213)
328 TIGR00639 PurN phosphoribosylg 34.5 2.9E+02 0.0062 23.8 8.2 34 15-51 1-36 (190)
329 PLN02240 UDP-glucose 4-epimera 34.3 65 0.0014 30.7 4.8 34 13-50 4-37 (352)
330 PRK04296 thymidine kinase; Pro 34.2 2.1E+02 0.0046 24.4 7.5 35 16-50 3-38 (190)
331 TIGR02699 archaeo_AfpA archaeo 34.2 54 0.0012 27.8 3.6 35 17-52 2-38 (174)
332 COG1154 Dxs Deoxyxylulose-5-ph 34.1 3.6E+02 0.0077 27.9 9.7 116 268-420 494-622 (627)
333 PRK05579 bifunctional phosphop 34.1 60 0.0013 31.8 4.4 40 12-52 4-43 (399)
334 CHL00194 ycf39 Ycf39; Provisio 33.8 77 0.0017 29.7 5.1 33 15-51 1-33 (317)
335 PRK05579 bifunctional phosphop 33.7 3.1E+02 0.0068 26.9 9.3 136 275-421 6-182 (399)
336 TIGR03026 NDP-sugDHase nucleot 33.5 57 0.0012 32.1 4.3 32 15-51 1-32 (411)
337 PRK08125 bifunctional UDP-gluc 33.1 1.6E+02 0.0034 31.2 7.7 31 15-50 1-31 (660)
338 PRK00652 lpxK tetraacyldisacch 32.8 75 0.0016 30.1 4.7 39 15-53 50-90 (325)
339 PRK13055 putative lipid kinase 32.7 1.5E+02 0.0032 28.3 6.8 81 278-382 6-93 (334)
340 PRK08155 acetolactate synthase 32.6 90 0.002 32.2 5.8 80 292-381 14-109 (564)
341 COG1435 Tdk Thymidine kinase [ 32.6 3.3E+02 0.0072 23.6 11.0 39 15-53 4-43 (201)
342 COG0297 GlgA Glycogen synthase 32.5 1.3E+02 0.0028 30.3 6.5 171 277-462 293-477 (487)
343 COG2085 Predicted dinucleotide 32.5 69 0.0015 28.0 4.0 32 15-51 2-33 (211)
344 TIGR01380 glut_syn glutathione 32.4 70 0.0015 30.1 4.5 38 15-52 1-41 (312)
345 PLN02657 3,8-divinyl protochlo 32.4 84 0.0018 30.6 5.2 38 10-51 56-93 (390)
346 PF06792 UPF0261: Uncharacteri 32.2 2E+02 0.0044 28.0 7.5 96 274-385 183-281 (403)
347 PLN02929 NADH kinase 32.2 45 0.00097 31.1 3.0 66 351-422 63-137 (301)
348 PF01497 Peripla_BP_2: Peripla 32.1 1.4E+02 0.0031 26.3 6.4 41 100-145 52-94 (238)
349 PRK08229 2-dehydropantoate 2-r 31.9 51 0.0011 31.4 3.6 32 15-51 3-34 (341)
350 PF12695 Abhydrolase_5: Alpha/ 31.7 1.1E+02 0.0024 24.2 5.2 34 17-50 1-34 (145)
351 PRK12342 hypothetical protein; 31.6 78 0.0017 28.7 4.4 32 112-143 108-145 (254)
352 PRK14092 2-amino-4-hydroxy-6-h 31.5 1.1E+02 0.0024 25.6 5.0 31 274-304 5-35 (163)
353 PRK12311 rpsB 30S ribosomal pr 31.3 64 0.0014 30.5 3.9 34 113-146 152-187 (326)
354 PF13450 NAD_binding_8: NAD(P) 31.3 61 0.0013 22.4 3.0 21 31-51 8-28 (68)
355 cd06559 Endonuclease_V Endonuc 31.1 56 0.0012 28.6 3.3 32 112-143 92-130 (208)
356 PRK13054 lipid kinase; Reviewe 31.0 1.9E+02 0.0041 27.0 7.1 81 275-382 4-92 (300)
357 PRK05282 (alpha)-aspartyl dipe 30.8 2E+02 0.0044 25.7 6.9 44 266-311 24-67 (233)
358 PRK04885 ppnK inorganic polyph 30.8 32 0.00069 31.5 1.8 29 352-382 35-69 (265)
359 cd01425 RPS2 Ribosomal protein 30.7 1.7E+02 0.0037 25.3 6.3 33 112-144 126-160 (193)
360 PRK13057 putative lipid kinase 30.6 1.1E+02 0.0024 28.3 5.5 65 293-382 14-82 (287)
361 cd00861 ProRS_anticodon_short 30.6 92 0.002 22.7 4.1 36 15-50 2-39 (94)
362 PF00070 Pyr_redox: Pyridine n 30.5 78 0.0017 22.4 3.6 23 30-52 10-32 (80)
363 PLN02778 3,5-epimerase/4-reduc 30.5 1.1E+02 0.0023 28.6 5.4 35 10-48 5-39 (298)
364 PRK11064 wecC UDP-N-acetyl-D-m 30.4 71 0.0015 31.5 4.4 34 13-51 2-35 (415)
365 COG0451 WcaG Nucleoside-diphos 30.2 1.2E+02 0.0026 28.0 5.9 25 25-51 9-33 (314)
366 TIGR03837 efp_adjacent_2 conse 30.2 1.6E+02 0.0036 28.2 6.4 86 289-379 190-285 (371)
367 PRK07236 hypothetical protein; 30.2 93 0.002 30.2 5.2 37 10-51 2-38 (386)
368 PRK09739 hypothetical protein; 30.2 1.3E+02 0.0029 26.0 5.6 38 13-50 2-42 (199)
369 TIGR02700 flavo_MJ0208 archaeo 30.1 73 0.0016 28.5 4.0 30 23-52 7-39 (234)
370 TIGR03018 pepcterm_TyrKin exop 30.1 1.2E+02 0.0026 26.4 5.3 42 12-53 32-76 (207)
371 PRK04761 ppnK inorganic polyph 29.8 34 0.00075 30.8 1.9 28 353-382 26-57 (246)
372 PLN02695 GDP-D-mannose-3',5'-e 29.7 1E+02 0.0023 29.7 5.3 35 12-50 19-53 (370)
373 COG2894 MinD Septum formation 29.7 93 0.002 27.5 4.3 37 16-52 3-41 (272)
374 PRK07206 hypothetical protein; 29.6 2.4E+02 0.0052 27.6 8.0 32 16-52 4-35 (416)
375 PRK07454 short chain dehydroge 29.6 1.1E+02 0.0023 27.2 5.1 35 14-51 5-39 (241)
376 cd07062 Peptidase_S66_mccF_lik 29.5 1.1E+02 0.0023 28.8 5.2 74 289-383 50-125 (308)
377 TIGR00640 acid_CoA_mut_C methy 29.5 1.1E+02 0.0025 24.5 4.6 39 13-51 1-39 (132)
378 cd07766 DHQ_Fe-ADH Dehydroquin 29.5 1.1E+02 0.0024 29.0 5.4 29 352-383 78-113 (332)
379 PRK07525 sulfoacetaldehyde ace 29.4 3.1E+02 0.0068 28.5 9.1 28 352-381 68-101 (588)
380 PRK13337 putative lipid kinase 29.4 1.9E+02 0.004 27.1 6.8 28 353-382 58-91 (304)
381 PF05693 Glycogen_syn: Glycoge 29.4 83 0.0018 32.3 4.6 94 345-439 462-566 (633)
382 COG0240 GpsA Glycerol-3-phosph 29.3 80 0.0017 29.8 4.2 33 14-51 1-33 (329)
383 PF04413 Glycos_transf_N: 3-De 29.3 52 0.0011 28.2 2.8 93 22-143 28-127 (186)
384 cd01983 Fer4_NifH The Fer4_Nif 29.1 1.3E+02 0.0028 21.6 4.8 33 17-49 2-34 (99)
385 cd01147 HemV-2 Metal binding p 29.1 83 0.0018 28.4 4.4 39 100-143 66-107 (262)
386 TIGR01283 nifE nitrogenase mol 28.9 4.2E+02 0.0091 26.5 9.6 33 13-50 325-357 (456)
387 COG3640 CooC CO dehydrogenase 28.9 1.6E+02 0.0035 26.4 5.6 40 15-54 1-41 (255)
388 cd01421 IMPCH Inosine monophos 28.9 75 0.0016 27.2 3.6 38 29-69 11-48 (187)
389 PF06506 PrpR_N: Propionate ca 28.9 1.7E+02 0.0036 24.8 5.9 114 26-148 17-157 (176)
390 PRK10037 cell division protein 28.8 84 0.0018 28.3 4.3 29 24-52 12-40 (250)
391 PLN02948 phosphoribosylaminoim 28.8 6.6E+02 0.014 26.1 11.1 37 12-53 20-56 (577)
392 PRK08309 short chain dehydroge 28.7 78 0.0017 26.9 3.8 31 15-50 1-31 (177)
393 TIGR00313 cobQ cobyric acid sy 28.7 6.2E+02 0.013 25.5 10.7 28 24-51 9-36 (475)
394 PF02780 Transketolase_C: Tran 28.7 81 0.0018 24.7 3.7 37 12-50 7-43 (124)
395 PRK02155 ppnK NAD(+)/NADH kina 28.6 41 0.00089 31.3 2.2 29 351-381 62-94 (291)
396 PRK06718 precorrin-2 dehydroge 28.6 82 0.0018 27.5 4.0 35 12-51 8-42 (202)
397 COG2840 Uncharacterized protei 28.5 50 0.0011 28.2 2.5 59 297-368 116-175 (184)
398 PRK09165 replicative DNA helic 28.5 1.3E+02 0.0028 30.5 5.9 36 17-52 220-270 (497)
399 PF03446 NAD_binding_2: NAD bi 28.5 63 0.0014 26.9 3.2 31 15-50 2-32 (163)
400 PF03853 YjeF_N: YjeF-related 28.4 1.1E+02 0.0025 25.6 4.7 39 11-50 22-60 (169)
401 PTZ00318 NADH dehydrogenase-li 28.3 71 0.0015 31.6 4.0 40 8-52 4-43 (424)
402 cd02065 B12-binding_like B12 b 28.3 1E+02 0.0022 23.9 4.3 34 17-50 2-35 (125)
403 COG0162 TyrS Tyrosyl-tRNA synt 28.2 87 0.0019 30.6 4.4 39 12-51 32-73 (401)
404 PF07905 PucR: Purine cataboli 28.2 2.9E+02 0.0064 21.6 7.9 55 266-330 36-91 (123)
405 PF05014 Nuc_deoxyrib_tr: Nucl 28.0 65 0.0014 24.8 3.0 39 347-385 56-100 (113)
406 COG1698 Uncharacterized protei 28.0 1.9E+02 0.0041 21.3 4.9 49 410-461 16-65 (93)
407 PRK01372 ddl D-alanine--D-alan 28.0 1E+02 0.0022 28.7 4.8 38 14-51 4-45 (304)
408 TIGR02356 adenyl_thiF thiazole 27.9 2.7E+02 0.0058 24.2 7.1 34 13-51 20-54 (202)
409 TIGR01005 eps_transp_fam exopo 27.9 3.1E+02 0.0067 29.5 9.0 39 14-52 545-585 (754)
410 KOG3062 RNA polymerase II elon 27.8 1.2E+02 0.0026 27.0 4.6 34 17-50 4-38 (281)
411 TIGR00110 ilvD dihydroxy-acid 27.7 3.3E+02 0.0072 27.7 8.4 48 95-146 75-126 (535)
412 cd01143 YvrC Periplasmic bindi 27.6 1E+02 0.0022 26.2 4.4 39 100-143 52-91 (195)
413 COG0771 MurD UDP-N-acetylmuram 27.5 93 0.002 30.9 4.5 35 14-53 7-41 (448)
414 PRK09444 pntB pyridine nucleot 27.5 94 0.002 30.6 4.4 40 13-52 305-347 (462)
415 PRK03767 NAD(P)H:quinone oxido 27.5 1.1E+02 0.0024 26.5 4.7 36 15-50 2-39 (200)
416 TIGR01915 npdG NADPH-dependent 27.5 65 0.0014 28.4 3.2 31 15-50 1-32 (219)
417 COG3245 CycB Cytochrome c5 [En 27.4 1.1E+02 0.0024 23.8 3.8 48 371-420 60-122 (126)
418 PRK14618 NAD(P)H-dependent gly 27.4 77 0.0017 30.0 3.9 33 14-51 4-36 (328)
419 COG2874 FlaH Predicted ATPases 27.4 28 0.00061 30.5 0.8 35 17-51 31-65 (235)
420 PRK01710 murD UDP-N-acetylmura 27.3 69 0.0015 32.1 3.7 32 14-50 14-45 (458)
421 PRK04940 hypothetical protein; 27.3 1.7E+02 0.0036 25.0 5.4 31 113-143 60-91 (180)
422 COG4088 Predicted nucleotide k 27.3 77 0.0017 27.8 3.4 35 17-51 4-38 (261)
423 TIGR03837 efp_adjacent_2 conse 27.2 1.1E+02 0.0025 29.2 4.8 33 19-51 5-38 (371)
424 cd01452 VWA_26S_proteasome_sub 27.2 1.6E+02 0.0034 25.4 5.3 35 17-51 111-145 (187)
425 PRK14620 NAD(P)H-dependent gly 27.1 74 0.0016 30.1 3.8 32 15-51 1-32 (326)
426 PF02826 2-Hacid_dh_C: D-isome 27.0 1.5E+02 0.0032 25.1 5.3 101 275-417 36-142 (178)
427 PRK03094 hypothetical protein; 26.8 60 0.0013 23.4 2.2 20 31-50 10-29 (80)
428 KOG0541 Alkyl hydroperoxide re 26.7 1.2E+02 0.0027 25.0 4.3 37 14-50 43-86 (171)
429 PRK06835 DNA replication prote 26.7 1.1E+02 0.0024 29.0 4.8 38 14-51 183-220 (329)
430 cd01840 SGNH_hydrolase_yrhL_li 26.7 1.3E+02 0.0027 24.5 4.7 39 275-314 50-88 (150)
431 PRK05636 replicative DNA helic 26.6 1.4E+02 0.0029 30.4 5.6 37 16-52 267-304 (505)
432 COG0125 Tmk Thymidylate kinase 26.6 2.9E+02 0.0064 24.2 7.0 41 13-53 2-42 (208)
433 TIGR00041 DTMP_kinase thymidyl 26.5 1.7E+02 0.0036 25.0 5.7 39 13-51 2-40 (195)
434 PRK05114 hypothetical protein; 26.5 2E+02 0.0044 19.1 4.6 30 428-461 13-42 (59)
435 KOG1387 Glycosyltransferase [C 26.4 5.8E+02 0.013 24.5 22.0 47 100-151 142-189 (465)
436 TIGR00064 ftsY signal recognit 26.4 1.7E+02 0.0036 26.9 5.8 40 14-53 72-111 (272)
437 PF01380 SIS: SIS domain SIS d 26.3 1.2E+02 0.0025 23.8 4.3 30 24-53 62-91 (131)
438 PRK12815 carB carbamoyl phosph 26.2 8.6E+02 0.019 27.6 12.2 40 13-52 554-599 (1068)
439 PF12617 LdpA_C: Iron-Sulfur b 26.2 1.3E+02 0.0029 25.5 4.5 39 277-316 38-76 (183)
440 PF07355 GRDB: Glycine/sarcosi 26.0 93 0.002 29.5 4.0 45 350-405 266-311 (349)
441 PRK15116 sulfur acceptor prote 26.0 4.2E+02 0.0092 24.3 8.2 34 13-51 29-63 (268)
442 PRK06180 short chain dehydroge 26.0 1.3E+02 0.0027 27.5 5.0 34 15-51 4-37 (277)
443 PF03720 UDPG_MGDP_dh_C: UDP-g 25.9 84 0.0018 24.0 3.2 22 29-50 17-38 (106)
444 TIGR03453 partition_RepA plasm 25.8 1.2E+02 0.0026 29.6 5.0 42 12-53 101-144 (387)
445 PF06418 CTP_synth_N: CTP synt 25.8 86 0.0019 28.5 3.5 38 15-52 1-41 (276)
446 PLN02683 pyruvate dehydrogenas 25.7 5.8E+02 0.012 24.6 9.5 15 407-421 337-351 (356)
447 PF03698 UPF0180: Uncharacteri 25.6 62 0.0014 23.4 2.2 22 31-52 10-31 (80)
448 PLN02582 1-deoxy-D-xylulose-5- 25.4 6.6E+02 0.014 26.7 10.4 51 362-421 607-667 (677)
449 COG0504 PyrG CTP synthase (UTP 25.4 1.4E+02 0.0029 29.9 5.0 39 15-53 1-42 (533)
450 CHL00175 minD septum-site dete 25.4 1.4E+02 0.003 27.4 5.2 41 13-53 13-55 (281)
451 PRK05708 2-dehydropantoate 2-r 25.4 68 0.0015 30.0 3.1 33 14-51 2-34 (305)
452 PF05225 HTH_psq: helix-turn-h 25.3 87 0.0019 19.6 2.6 26 408-435 1-26 (45)
453 TIGR03371 cellulose_yhjQ cellu 25.2 1E+02 0.0022 27.5 4.2 32 22-53 10-41 (246)
454 PRK11199 tyrA bifunctional cho 25.2 93 0.002 30.2 4.1 41 5-50 89-130 (374)
455 PRK14077 pnk inorganic polypho 25.1 51 0.0011 30.6 2.2 34 345-380 57-94 (287)
456 PF03808 Glyco_tran_WecB: Glyc 25.0 3.9E+02 0.0085 22.4 7.4 91 31-146 37-137 (172)
457 cd01968 Nitrogenase_NifE_I Nit 24.9 3E+02 0.0065 27.0 7.6 26 112-140 355-380 (410)
458 PRK01906 tetraacyldisaccharide 24.8 94 0.002 29.6 3.9 35 20-54 64-98 (338)
459 PRK03359 putative electron tra 24.7 1.2E+02 0.0026 27.6 4.4 32 112-143 111-148 (256)
460 TIGR02655 circ_KaiC circadian 24.6 7.3E+02 0.016 25.1 10.4 41 12-52 261-301 (484)
461 TIGR02622 CDP_4_6_dhtase CDP-g 24.6 1.2E+02 0.0025 28.9 4.7 33 14-50 4-36 (349)
462 PRK09271 flavodoxin; Provision 24.5 1.4E+02 0.003 24.7 4.6 36 15-50 1-37 (160)
463 TIGR00853 pts-lac PTS system, 24.4 2.1E+02 0.0046 21.3 5.0 38 13-50 2-39 (95)
464 PRK03202 6-phosphofructokinase 24.3 2.4E+02 0.0052 26.7 6.4 36 349-384 88-126 (320)
465 PRK02231 ppnK inorganic polyph 24.1 61 0.0013 29.8 2.4 33 347-381 37-73 (272)
466 cd08194 Fe-ADH6 Iron-containin 24.0 1.3E+02 0.0027 29.2 4.8 11 373-383 121-131 (375)
467 PRK12829 short chain dehydroge 24.0 1.5E+02 0.0034 26.5 5.2 35 12-50 9-43 (264)
468 PRK07773 replicative DNA helic 24.0 2E+02 0.0043 31.7 6.6 37 16-52 219-256 (886)
469 COG1087 GalE UDP-glucose 4-epi 23.9 86 0.0019 29.2 3.3 30 15-50 1-32 (329)
470 PF02233 PNTB: NAD(P) transhyd 23.9 97 0.0021 30.8 3.8 40 13-52 306-348 (463)
471 cd08551 Fe-ADH iron-containing 23.9 2.4E+02 0.0053 27.2 6.7 10 374-383 122-131 (370)
472 COG1422 Predicted membrane pro 23.9 3.7E+02 0.0081 23.3 6.8 82 365-458 23-105 (201)
473 cd00550 ArsA_ATPase Oxyanion-t 23.8 1.4E+02 0.003 27.1 4.7 37 17-53 3-39 (254)
474 TIGR01012 Sa_S2_E_A ribosomal 23.7 1E+02 0.0023 26.7 3.6 33 113-145 108-142 (196)
475 PLN00141 Tic62-NAD(P)-related 23.6 1.7E+02 0.0037 26.2 5.4 33 14-50 17-49 (251)
476 PF08452 DNAP_B_exo_N: DNA pol 23.5 55 0.0012 16.7 1.1 16 266-281 5-20 (22)
477 PRK06756 flavodoxin; Provision 23.5 1.5E+02 0.0032 24.1 4.5 36 15-50 2-38 (148)
478 PRK00771 signal recognition pa 23.4 1.9E+02 0.0042 28.7 5.9 42 13-54 94-135 (437)
479 cd03146 GAT1_Peptidase_E Type 23.3 2.7E+02 0.0059 24.4 6.3 44 266-311 20-66 (212)
480 PRK01231 ppnK inorganic polyph 23.3 1.3E+02 0.0028 28.0 4.5 54 351-422 61-118 (295)
481 PLN02166 dTDP-glucose 4,6-dehy 23.3 1.7E+02 0.0036 29.1 5.5 38 9-50 115-152 (436)
482 cd05014 SIS_Kpsf KpsF-like pro 23.3 2.2E+02 0.0049 22.1 5.4 45 20-65 52-96 (128)
483 PRK02645 ppnK inorganic polyph 23.2 54 0.0012 30.7 2.0 29 352-382 57-89 (305)
484 PRK14494 putative molybdopteri 23.2 1.5E+02 0.0031 26.5 4.6 36 15-50 1-37 (229)
485 PRK11104 hemG protoporphyrinog 23.2 1.2E+02 0.0026 25.8 3.9 35 15-50 1-36 (177)
486 PF03358 FMN_red: NADPH-depend 23.1 1.1E+02 0.0023 25.0 3.5 36 15-50 1-39 (152)
487 COG2120 Uncharacterized protei 22.9 1.4E+02 0.003 26.8 4.5 37 14-51 10-47 (237)
488 PF06180 CbiK: Cobalt chelatas 22.8 1.2E+02 0.0027 27.6 4.1 37 277-313 2-41 (262)
489 PHA02519 plasmid partition pro 22.7 1.5E+02 0.0033 28.9 5.0 41 13-53 104-147 (387)
490 PRK06924 short chain dehydroge 22.6 1.5E+02 0.0032 26.5 4.7 33 15-50 1-33 (251)
491 PHA02754 hypothetical protein; 22.5 1.6E+02 0.0035 19.5 3.3 24 414-440 5-28 (67)
492 PF10727 Rossmann-like: Rossma 22.4 1.5E+02 0.0033 23.6 4.1 35 11-50 7-41 (127)
493 TIGR01689 EcbF-BcbF capsule bi 22.3 99 0.0022 24.6 3.0 23 30-52 28-50 (126)
494 COG2159 Predicted metal-depend 22.3 3.4E+02 0.0074 25.2 7.1 109 241-370 97-210 (293)
495 PRK03708 ppnK inorganic polyph 22.3 1.6E+02 0.0034 27.2 4.7 35 15-49 1-36 (277)
496 PF09334 tRNA-synt_1g: tRNA sy 22.3 69 0.0015 31.3 2.6 28 26-53 17-47 (391)
497 PRK14477 bifunctional nitrogen 22.3 5.5E+02 0.012 28.5 9.6 98 12-142 318-415 (917)
498 PRK04020 rps2P 30S ribosomal p 22.3 1.2E+02 0.0025 26.6 3.6 33 113-145 114-148 (204)
499 PF09001 DUF1890: Domain of un 22.1 72 0.0016 25.6 2.1 27 26-52 11-37 (139)
500 PF07991 IlvN: Acetohydroxy ac 22.1 81 0.0018 26.4 2.5 53 13-70 3-56 (165)
No 1
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=8e-67 Score=506.77 Aligned_cols=444 Identities=44% Similarity=0.802 Sum_probs=347.5
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCC-CCCCCceEEeCCCCCCCcccccccHHHHHHHHH
Q 012474 12 KKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNP-SNYPHFSFNSISESLWESEVSTENAISLLTVLN 90 (463)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (463)
..+.||+++|++++||++|++.||+.|+.+|+.|||++++.+.... ....++++..+|+++|++.........++..+.
T Consensus 5 ~~~~HVvlvPfpaqGHi~P~l~LAk~La~~G~~VT~v~T~~n~~~~~~~~~~i~~~~ip~glp~~~~~~~~~~~~~~~~~ 84 (451)
T PLN02410 5 PARRRVVLVPVPAQGHISPMMQLAKTLHLKGFSITIAQTKFNYFSPSDDFTDFQFVTIPESLPESDFKNLGPIEFLHKLN 84 (451)
T ss_pred CCCCEEEEECCCccccHHHHHHHHHHHHcCCCEEEEEeCcccccccccCCCCeEEEeCCCCCCcccccccCHHHHHHHHH
Confidence 3677999999999999999999999999999999999998764221 112469999999888764322223334555555
Q ss_pred HhcCchHHHHHHHHHhCCCCCCCceEEEeCCchhhHHHHHHHcCCCeEEEeCchhHHHHHHHHHHHHHHhcc-ccccccC
Q 012474 91 DKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGY-LAEQVSF 169 (463)
Q Consensus 91 ~~~~~~l~~~l~~l~~~~~~~~~pD~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~ 169 (463)
..+...+.+.++++..+.. .++++||+|.+..|+..+|+++|||++.++++++..++.+.+.+....... .|.. ..
T Consensus 85 ~~~~~~~~~~L~~l~~~~~--~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~~~~~~-~~ 161 (451)
T PLN02410 85 KECQVSFKDCLGQLVLQQG--NEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNVLAPLK-EP 161 (451)
T ss_pred HHhHHHHHHHHHHHHhccC--CCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccCCCCcc-cc
Confidence 5666777777777653221 457999999999999999999999999999999998877665443332211 1211 00
Q ss_pred CCCCCCccccCCCCCCCcCCCCccccCCCchHHHHHHHHHhhccCCceEEEcchhhhhHHHHHHhhhcCCCCcccccccc
Q 012474 170 SSDSQLEKPVTELPPLRVKDIPIIVTHDTRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELTRLHKDFPIPMFPIGPFH 249 (463)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~v~~vGpl~ 249 (463)
.......+++++.++..+++.............+.... ...+++.+++|||.+||+..++.+++.+++++++|||++
T Consensus 162 --~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~-~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~v~~vGpl~ 238 (451)
T PLN02410 162 --KGQQNELVPEFHPLRCKDFPVSHWASLESIMELYRNTV-DKRTASSVIINTASCLESSSLSRLQQQLQIPVYPIGPLH 238 (451)
T ss_pred --ccCccccCCCCCCCChHHCcchhcCCcHHHHHHHHHHh-hcccCCEEEEeChHHhhHHHHHHHHhccCCCEEEecccc
Confidence 00111246666666666766432122222223332222 356788999999999999999999886667899999998
Q ss_pred ccccccCCCcc-cccchhccccccCCCCeEEEEecCCcccCCHHHHHHHHHHHhcCCCceEEEEcCCCCCCCccCCCCch
Q 012474 250 KYCLASSSSLL-SQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPK 328 (463)
Q Consensus 250 ~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~ 328 (463)
..... ...+ ..+.++.+||++++.+++|||||||....+.+.+.+++.+|+..+++|||++..+...+.+....+|+
T Consensus 239 ~~~~~--~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~~~~~~lp~ 316 (451)
T PLN02410 239 LVASA--PTSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVRGSEWIESLPK 316 (451)
T ss_pred cccCC--CccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCcccccchhhcCCh
Confidence 64321 0122 22345789999988889999999999999999999999999999999999998432111122234899
Q ss_pred hHHHHhcCCCceeeccChhhhhcCCCCcccccccChhhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCCccC
Q 012474 329 GFLEMLDGRGHIVKWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFE 408 (463)
Q Consensus 329 ~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~t 408 (463)
+|.++.++|+++++|+||.+||+|+++++||||||+||+.||+++|||||++|+++||+.||+++++.||+|+.+...++
T Consensus 317 ~f~er~~~~g~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~ 396 (451)
T PLN02410 317 EFSKIISGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVEGDLD 396 (451)
T ss_pred hHHHhccCCeEEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999874699999977789
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhcC
Q 012474 409 RREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILSF 463 (463)
Q Consensus 409 ~~~l~~~i~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 463 (463)
.++|.++|+++|.++++++||++|+++++++++|+.+|||+.+.++++++.+..+
T Consensus 397 ~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~~~ 451 (451)
T PLN02410 397 RGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMRTL 451 (451)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Confidence 9999999999998866779999999999999999999999999999999998764
No 2
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=2.7e-63 Score=483.58 Aligned_cols=439 Identities=29% Similarity=0.535 Sum_probs=340.0
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC----------C---CCCceEEeCCCCCCCccccc
Q 012474 13 KGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPS----------N---YPHFSFNSISESLWESEVST 79 (463)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~----------~---~~g~~~~~~~~~~~~~~~~~ 79 (463)
.+.||+++|+|++||++|++.||+.|+.+|..|||++++.+..... . ...++|..+|++++++.+..
T Consensus 6 ~~~HVv~~PfpaqGHi~Pml~lA~~La~~G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~pdglp~~~~~~ 85 (480)
T PLN02555 6 SLVHVMLVSFPGQGHVNPLLRLGKLLASKGLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFEDGWAEDDPRR 85 (480)
T ss_pred CCCEEEEECCcccccHHHHHHHHHHHHhCCCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCCCCCCCCcccc
Confidence 3679999999999999999999999999999999999986543211 0 11366776777777654332
Q ss_pred ccHHHHHHHHHHhcCchHHHHHHHHHhCCCCCCCceEEEeCCchhhHHHHHHHcCCCeEEEeCchhHHHHHHHHHHHHHH
Q 012474 80 ENAISLLTVLNDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLE 159 (463)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~pD~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~ 159 (463)
.+...++..+...+...+.+.++++.... .++++||+|.+..|+..+|+++|||++.++++++..++.+.+.+
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~---- 158 (480)
T PLN02555 86 QDLDLYLPQLELVGKREIPNLVKRYAEQG---RPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYY---- 158 (480)
T ss_pred cCHHHHHHHHHHhhhHHHHHHHHHHhccC---CCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHh----
Confidence 34444555555556677777777654221 23499999999999999999999999999999999888776542
Q ss_pred hccccccccCCCCCCCccccCCCCCCCcCCCCccccC--CCchHHHHHHHHHhhccCCceEEEcchhhhhHHHHHHhhhc
Q 012474 160 KGYLAEQVSFSSDSQLEKPVTELPPLRVKDIPIIVTH--DTRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELTRLHKD 237 (463)
Q Consensus 160 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~ 237 (463)
....+... .. .......+++++.++..+++..... ......+.+.+..+...+++.+++|||.+||...++.+++.
T Consensus 159 ~~~~~~~~-~~-~~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~ 236 (480)
T PLN02555 159 HGLVPFPT-ET-EPEIDVQLPCMPLLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDYMSKL 236 (480)
T ss_pred hcCCCccc-cc-CCCceeecCCCCCcCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHhhC
Confidence 11112110 00 0111234777777888888754321 22233444444445667788999999999999998888763
Q ss_pred CCCCcccccccccccccc-C---CCcccccchhccccccCCCCeEEEEecCCcccCCHHHHHHHHHHHhcCCCceEEEEc
Q 012474 238 FPIPMFPIGPFHKYCLAS-S---SSLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVR 313 (463)
Q Consensus 238 ~~~~v~~vGpl~~~~~~~-~---~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~v~~~~ 313 (463)
. +++.|||+....... . ......+.++.+||++++.+++|||||||....+.+.+.+++.+++..++++||++.
T Consensus 237 ~--~v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~~ 314 (480)
T PLN02555 237 C--PIKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVMR 314 (480)
T ss_pred C--CEEEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEEe
Confidence 3 599999997532110 0 011223456899999987788999999999999999999999999999999999987
Q ss_pred CCCCCCCccCCCCchhHHHHhcCCCceeeccChhhhhcCCCCcccccccChhhHHHHHhhCCceeccccccchhhhHHHH
Q 012474 314 PGLVPGVEWLEPLPKGFLEMLDGRGHIVKWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYV 393 (463)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv 393 (463)
............+|+++.++.++|+++++|+||.+||.|+++++||||||+||+.||+++|||||++|+++||+.||+++
T Consensus 315 ~~~~~~~~~~~~lp~~~~~~~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~ 394 (480)
T PLN02555 315 PPHKDSGVEPHVLPEEFLEKAGDKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYL 394 (480)
T ss_pred cCcccccchhhcCChhhhhhcCCceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCccccHHHHHHH
Confidence 42110000013478899888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhceeecC-----C-ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012474 394 SHVWRVGLHLE-----R-KFERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILS 462 (463)
Q Consensus 394 ~~~~G~G~~l~-----~-~~t~~~l~~~i~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 462 (463)
++.||+|+.+. . .++.++|.++|+++|.+++++.+|+||++|++++++|+.+|||+.+.+++|++.+.+
T Consensus 395 ~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l~~~v~~i~~ 469 (480)
T PLN02555 395 VDVFKTGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDRNFQEFVDKLVR 469 (480)
T ss_pred HHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Confidence 88679999993 3 589999999999999887788999999999999999999999999999999999864
No 3
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=6.8e-63 Score=476.89 Aligned_cols=422 Identities=31% Similarity=0.492 Sum_probs=332.4
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC--CCCCceEEeCCCCCCCcc-cccccHHHHHHH
Q 012474 12 KKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPS--NYPHFSFNSISESLWESE-VSTENAISLLTV 88 (463)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~ 88 (463)
+++.||+++|++++||++|++.||+.|+.+|+.|||++++.+..... ..++++++.+|++++++. ....+...++..
T Consensus 3 ~~~~hvv~~P~paqGHi~P~l~lAk~La~~G~~vT~v~t~~~~~~~~~~~~~~i~~~~ipdglp~~~~~~~~~~~~~~~~ 82 (449)
T PLN02173 3 KMRGHVLAVPFPSQGHITPIRQFCKRLHSKGFKTTHTLTTFIFNTIHLDPSSPISIATISDGYDQGGFSSAGSVPEYLQN 82 (449)
T ss_pred CCCcEEEEecCcccccHHHHHHHHHHHHcCCCEEEEEECCchhhhcccCCCCCEEEEEcCCCCCCcccccccCHHHHHHH
Confidence 45679999999999999999999999999999999999986643321 124699999998888743 333345566666
Q ss_pred HHHhcCchHHHHHHHHHhCCCCCCCc-eEEEeCCchhhHHHHHHHcCCCeEEEeCchhHHHHHHHHHHHHHHhccccccc
Q 012474 89 LNDKCVVPFQDCLAKLISNGDQEEPV-TCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYLAEQV 167 (463)
Q Consensus 89 ~~~~~~~~l~~~l~~l~~~~~~~~~p-D~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 167 (463)
+...+.+.+.+.++.+... .+| ++||+|.+..|+..+|+++|||++.++++++..+..+.+. .. ...
T Consensus 83 ~~~~~~~~~~~~l~~~~~~----~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~~-~~-~~~------ 150 (449)
T PLN02173 83 FKTFGSKTVADIIRKHQST----DNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYLS-YI-NNG------ 150 (449)
T ss_pred HHHhhhHHHHHHHHHhhcc----CCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHhH-Hh-ccC------
Confidence 6667777788877766432 245 9999999999999999999999999999887776554321 11 000
Q ss_pred cCCCCCCCccccCCCCCCCcCCCCccccC--CCchHHHHHHHHHhhccCCceEEEcchhhhhHHHHHHhhhcCCCCcccc
Q 012474 168 SFSSDSQLEKPVTELPPLRVKDIPIIVTH--DTRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELTRLHKDFPIPMFPI 245 (463)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~v~~v 245 (463)
.....+++++.++..+++..... ........+.+..+...+++.+++||+.+||+...+.+++. .+++.|
T Consensus 151 ------~~~~~~pg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~--~~v~~V 222 (449)
T PLN02173 151 ------SLTLPIKDLPLLELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKV--CPVLTI 222 (449)
T ss_pred ------CccCCCCCCCCCChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhc--CCeeEE
Confidence 01122556666677777754322 12223343334445567889999999999999988888653 479999
Q ss_pred ccccccc-------cccCCC-c-c--cccchhccccccCCCCeEEEEecCCcccCCHHHHHHHHHHHhcCCCceEEEEcC
Q 012474 246 GPFHKYC-------LASSSS-L-L--SQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRP 314 (463)
Q Consensus 246 Gpl~~~~-------~~~~~~-~-~--~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~v~~~~~ 314 (463)
||++... ...... . + ..++++.+||+.++.+++|||||||....+.+.+.+++.+| .+.+++|++..
T Consensus 223 GPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~flWvvr~ 300 (449)
T PLN02173 223 GPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFSYLWVVRA 300 (449)
T ss_pred cccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCCEEEEEec
Confidence 9997421 000000 0 1 22345899999988889999999999999999999999999 56789999975
Q ss_pred CCCCCCccCCCCchhHHHHh-cCCCceeeccChhhhhcCCCCcccccccChhhHHHHHhhCCceeccccccchhhhHHHH
Q 012474 315 GLVPGVEWLEPLPKGFLEML-DGRGHIVKWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYV 393 (463)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv 393 (463)
.. ...+|+++.++. ++|+++++|+||.+||+|+++++||||||+||+.||+.+|||||++|+++||+.||+++
T Consensus 301 ~~------~~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v 374 (449)
T PLN02173 301 SE------ESKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYI 374 (449)
T ss_pred cc------hhcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcchHHHHHH
Confidence 32 123788888887 58889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhceeecCC-----ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 012474 394 SHVWRVGLHLER-----KFERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHIL 461 (463)
Q Consensus 394 ~~~~G~G~~l~~-----~~t~~~l~~~i~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 461 (463)
++.||+|+.+.. .++.++|.++|+++|.+++++.+|++|++++++.++|+.+|||+.++++++++.+.
T Consensus 375 ~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~~v~~~~ 447 (449)
T PLN02173 375 QDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDININTFVSKIQ 447 (449)
T ss_pred HHHhCceEEEeecccCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhc
Confidence 975799988853 25999999999999998778899999999999999999999999999999999875
No 4
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=6.4e-63 Score=481.10 Aligned_cols=432 Identities=30% Similarity=0.534 Sum_probs=331.5
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC----CCCCceEEeCCCCCCCcccccccHHHHHH
Q 012474 12 KKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPS----NYPHFSFNSISESLWESEVSTENAISLLT 87 (463)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (463)
..+.||+++|+|++||++|++.||+.|+.+|++|||++++.+..... ...+++++.+|++.+++. ..++..++.
T Consensus 4 ~~~~HVVlvPfPaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~~~~~~~~~~~i~~v~lp~g~~~~~--~~~~~~l~~ 81 (448)
T PLN02562 4 TQRPKIILVPYPAQGHVTPMLKLASAFLSRGFEPVVITPEFIHRRISATLDPKLGITFMSISDGQDDDP--PRDFFSIEN 81 (448)
T ss_pred CCCcEEEEEcCccccCHHHHHHHHHHHHhCCCEEEEEeCcchhhhhhhccCCCCCEEEEECCCCCCCCc--cccHHHHHH
Confidence 34569999999999999999999999999999999999986543221 123699999998765322 123334444
Q ss_pred HHHHhcCchHHHHHHHHHhCCCCCCCceEEEeCCchhhHHHHHHHcCCCeEEEeCchhHHHHHHHHHHHHHHhccccccc
Q 012474 88 VLNDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYLAEQV 167 (463)
Q Consensus 88 ~~~~~~~~~l~~~l~~l~~~~~~~~~pD~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 167 (463)
.+...+...+.++++++... .++++||+|.+..|+..+|+++|||++.++++++..++.+.+.+........+..
T Consensus 82 a~~~~~~~~l~~ll~~l~~~----~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~- 156 (448)
T PLN02562 82 SMENTMPPQLERLLHKLDED----GEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLISET- 156 (448)
T ss_pred HHHHhchHHHHHHHHHhcCC----CCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhccccccc-
Confidence 44445667777777666431 2358999999999999999999999999999988877776655433222211111
Q ss_pred cCCCCCCCccccCCCCCCCcCCCCccccCC--CchHHHHHHHHHhhccCCceEEEcchhhhhHHHHHHhhhc----CCCC
Q 012474 168 SFSSDSQLEKPVTELPPLRVKDIPIIVTHD--TRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELTRLHKD----FPIP 241 (463)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~----~~~~ 241 (463)
+.+........+++++.++..+++...... .......+.+..+...+++.+++|||.+||+..++.+... ..++
T Consensus 157 ~~~~~~~~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~~~ 236 (448)
T PLN02562 157 GCPRQLEKICVLPEQPLLSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASYNNGQNPQ 236 (448)
T ss_pred cccccccccccCCCCCCCChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhhccccCCC
Confidence 000000111235666667777777533211 2233444555555667788999999999999877765532 2356
Q ss_pred cccccccccccccc--CCCcccccchhccccccCCCCeEEEEecCCcc-cCCHHHHHHHHHHHhcCCCceEEEEcCCCCC
Q 012474 242 MFPIGPFHKYCLAS--SSSLLSQDQSCISWLDKQAAKSVMYVSFGSIV-VVNVTEFLEIAWGLANSRVPFLWVVRPGLVP 318 (463)
Q Consensus 242 v~~vGpl~~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~-~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~ 318 (463)
++.|||++...... ....++.+.++.+||++++.+++|||||||.. ..+.+.++.++.++++.++++||++..+.
T Consensus 237 v~~iGpl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~~-- 314 (448)
T PLN02562 237 ILQIGPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPVW-- 314 (448)
T ss_pred EEEecCcccccccccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCCc--
Confidence 99999998653210 01113445567799999877889999999976 57899999999999999999999996532
Q ss_pred CCccCCCCchhHHHHhcCCCceeeccChhhhhcCCCCcccccccChhhHHHHHhhCCceeccccccchhhhHHHHHHHhh
Q 012474 319 GVEWLEPLPKGFLEMLDGRGHIVKWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWR 398 (463)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G 398 (463)
...+|+++.++.++|+++++|+||.+||+|+++++||||||+||+.||+++|||||++|+++||+.||+++++.+|
T Consensus 315 ----~~~l~~~~~~~~~~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g 390 (448)
T PLN02562 315 ----REGLPPGYVERVSKQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWK 390 (448)
T ss_pred ----hhhCCHHHHHHhccCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhC
Confidence 1238888989999999999999999999999999999999999999999999999999999999999999986469
Q ss_pred ceeecCCccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 012474 399 VGLHLERKFERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHIL 461 (463)
Q Consensus 399 ~G~~l~~~~t~~~l~~~i~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 461 (463)
+|+.+.. ++.++|.++|+++|.| ++||+||+++++++.++ .+||||.+.+++|++.++
T Consensus 391 ~g~~~~~-~~~~~l~~~v~~~l~~---~~~r~~a~~l~~~~~~~-~~gGSS~~nl~~~v~~~~ 448 (448)
T PLN02562 391 IGVRISG-FGQKEVEEGLRKVMED---SGMGERLMKLRERAMGE-EARLRSMMNFTTLKDELK 448 (448)
T ss_pred ceeEeCC-CCHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhC
Confidence 9998864 8999999999999998 89999999999999876 567999999999999874
No 5
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.3e-62 Score=482.85 Aligned_cols=433 Identities=32% Similarity=0.528 Sum_probs=331.4
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCC---CCCceEEeCCCCCCCcccccccHHHHH
Q 012474 12 KKGRRVILFPLPLQGHINPMLQLASILYSK--GFSITIIHTNFNSPNPSN---YPHFSFNSISESLWESEVSTENAISLL 86 (463)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~ 86 (463)
..+.||+++|+|+.||++|++.||++|+++ ||+|||++++.+...... ..+++|+.+|+.+++......+...++
T Consensus 8 ~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~~~~~~~gi~fv~lp~~~p~~~~~~~~~~~~~ 87 (459)
T PLN02448 8 TTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIGSDPKPDNIRFATIPNVIPSELVRAADFPGFL 87 (459)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhhccCCCCCEEEEECCCCCCCccccccCHHHHH
Confidence 458899999999999999999999999999 999999999866433332 247999999976655433233444555
Q ss_pred HHHHHhcCchHHHHHHHHHhCCCCCCCceEEEeCCchhhHHHHHHHcCCCeEEEeCchhHHHHHHHHHHHHHHhcccccc
Q 012474 87 TVLNDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYLAEQ 166 (463)
Q Consensus 87 ~~~~~~~~~~l~~~l~~l~~~~~~~~~pD~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 166 (463)
..+.+.+...+.+.++++. .++|+||+|.++.|+..+|+++|||++.+++.++..++.+.+.+........|..
T Consensus 88 ~~~~~~~~~~~~~~l~~~~------~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~~~~ 161 (459)
T PLN02448 88 EAVMTKMEAPFEQLLDRLE------PPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHFPVE 161 (459)
T ss_pred HHHHHHhHHHHHHHHHhcC------CCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCCCCc
Confidence 5544445555556555542 3589999999999999999999999999999999877776655433222111211
Q ss_pred ccCCCCCCCccccCCCCCCCcCCCCccccCCCchHHHHHHHHHhhccCCceEEEcchhhhhHHHHHHhhhcCCCCccccc
Q 012474 167 VSFSSDSQLEKPVTELPPLRVKDIPIIVTHDTRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELTRLHKDFPIPMFPIG 246 (463)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~v~~vG 246 (463)
.... .......++++..+...+++...........+.+........+++.+++||+.+||+...+.+++.++.+++.||
T Consensus 162 ~~~~-~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~~~~~~~~iG 240 (459)
T PLN02448 162 LSES-GEERVDYIPGLSSTRLSDLPPIFHGNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSKFPFPVYPIG 240 (459)
T ss_pred cccc-cCCccccCCCCCCCChHHCchhhcCCchHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhhcCCceEEec
Confidence 0000 001111355555566666664332222233444444445566778999999999999989888887767899999
Q ss_pred cccccccccC-CCc--c-cccchhccccccCCCCeEEEEecCCcccCCHHHHHHHHHHHhcCCCceEEEEcCCCCCCCcc
Q 012474 247 PFHKYCLASS-SSL--L-SQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEW 322 (463)
Q Consensus 247 pl~~~~~~~~-~~~--~-~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~ 322 (463)
|+........ ... . +.+.++.+|++.++.+++|||||||....+.+.+++++.+|+..++++||++....
T Consensus 241 P~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~~------ 314 (459)
T PLN02448 241 PSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARGEA------ 314 (459)
T ss_pred CcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcCch------
Confidence 9975321100 000 1 12236889999988889999999999888899999999999999999999876421
Q ss_pred CCCCchhHHHHhcCCCceeeccChhhhhcCCCCcccccccChhhHHHHHhhCCceeccccccchhhhHHHHHHHhhceee
Q 012474 323 LEPLPKGFLEMLDGRGHIVKWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLH 402 (463)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~ 402 (463)
..+.++.++|+++++|+||.+||+|+++++||||||+||+.||+++|||||++|+++||+.||+++++.||+|+.
T Consensus 315 -----~~~~~~~~~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~ 389 (459)
T PLN02448 315 -----SRLKEICGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWR 389 (459)
T ss_pred -----hhHhHhccCCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEE
Confidence 234444556888999999999999999999999999999999999999999999999999999999875688888
Q ss_pred cCC------ccCHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012474 403 LER------KFERREIETAIRRVTVEA--EGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILS 462 (463)
Q Consensus 403 l~~------~~t~~~l~~~i~~~l~~~--~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 462 (463)
+.. .++.++|+++|+++|.++ ++++||++|+++++++++|+.+|||+.+.++++++.+.+
T Consensus 390 ~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~~~~~ 457 (459)
T PLN02448 390 VKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIRDISQ 457 (459)
T ss_pred EecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHhc
Confidence 842 479999999999999863 477999999999999999999999999999999999864
No 6
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=1.3e-62 Score=477.38 Aligned_cols=429 Identities=28% Similarity=0.473 Sum_probs=327.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEeCCCCCCCC----CCCCCceEEeCCC----CCCCcccccccHHH
Q 012474 14 GRRVILFPLPLQGHINPMLQLASILY-SKGFSITIIHTNFNSPNP----SNYPHFSFNSISE----SLWESEVSTENAIS 84 (463)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~~~----~~~~g~~~~~~~~----~~~~~~~~~~~~~~ 84 (463)
+.||+++|++++||++|++.||+.|+ .+|++|||++++.+.... ....+++++.+|. ++++.. .+...
T Consensus 5 ~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~~~~~~~~~i~~~~lp~p~~~glp~~~---~~~~~ 81 (481)
T PLN02992 5 KPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQSKFLNSTGVDIVGLPSPDISGLVDPS---AHVVT 81 (481)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhhhccccCCCceEEECCCccccCCCCCC---ccHHH
Confidence 56999999999999999999999998 789999999998764321 1223688998884 333111 12222
Q ss_pred HHHHHHHhcCchHHHHHHHHHhCCCCCCCceEEEeCCchhhHHHHHHHcCCCeEEEeCchhHHHHHHHHHHHHHHhcccc
Q 012474 85 LLTVLNDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYLA 164 (463)
Q Consensus 85 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~pD~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~p 164 (463)
.+..........+++++.++. .+|++||+|.+..|+..+|+++|||++.++++++..++.+.+.+........+
T Consensus 82 ~~~~~~~~~~~~~~~~l~~~~------~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~~~ 155 (481)
T PLN02992 82 KIGVIMREAVPTLRSKIAEMH------QKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIKEE 155 (481)
T ss_pred HHHHHHHHhHHHHHHHHHhcC------CCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhccccccc
Confidence 222222333344555554431 46899999999999999999999999999999998876655443221110000
Q ss_pred ccccCCCCCCCccccCCCCCCCcCCCCccccCCCchHHHHHHHHHhhccCCceEEEcchhhhhHHHHHHhhhc--C----
Q 012474 165 EQVSFSSDSQLEKPVTELPPLRVKDIPIIVTHDTRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELTRLHKD--F---- 238 (463)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~--~---- 238 (463)
.. .......+++++.++..+++.............+.+......+++.+++||+.+||+..++.++.. +
T Consensus 156 ~~-----~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~~~ 230 (481)
T PLN02992 156 HT-----VQRKPLAMPGCEPVRFEDTLDAYLVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLGRVA 230 (481)
T ss_pred cc-----cCCCCcccCCCCccCHHHhhHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhcccccccc
Confidence 00 000112466666677777774222233333444445455667889999999999999999887652 1
Q ss_pred CCCccccccccccccccCCCcccccchhccccccCCCCeEEEEecCCcccCCHHHHHHHHHHHhcCCCceEEEEcCCCCC
Q 012474 239 PIPMFPIGPFHKYCLASSSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLVP 318 (463)
Q Consensus 239 ~~~v~~vGpl~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~ 318 (463)
.++++.|||+...... . ..+.++.+||++++.+++|||||||...++.+.+++++.+|+.++++|||++......
T Consensus 231 ~~~v~~VGPl~~~~~~---~--~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~ 305 (481)
T PLN02992 231 RVPVYPIGPLCRPIQS---S--KTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDG 305 (481)
T ss_pred CCceEEecCccCCcCC---C--cchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCccc
Confidence 2579999999753221 1 2345689999998888999999999999999999999999999999999999632100
Q ss_pred --------------CCccCCCCchhHHHHhcCCCcee-eccChhhhhcCCCCcccccccChhhHHHHHhhCCceeccccc
Q 012474 319 --------------GVEWLEPLPKGFLEMLDGRGHIV-KWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCF 383 (463)
Q Consensus 319 --------------~~~~~~~~~~~~~~~~~~~~~~~-~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~ 383 (463)
..+..+.+|++|.++..+++.++ +|+||.+||+|+++++||||||+||+.||+++|||||++|++
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P~~ 385 (481)
T PLN02992 306 SACSAYFSANGGETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLF 385 (481)
T ss_pred ccccccccCcccccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEEecCcc
Confidence 00002248899999988887666 999999999999999999999999999999999999999999
Q ss_pred cchhhhHHHHH-HHhhceeecCC---ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHh--hCCChHHHHHHHH
Q 012474 384 GDQLVNARYVS-HVWRVGLHLER---KFERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLL--EAGSSYQSLERLV 457 (463)
Q Consensus 384 ~DQ~~na~rv~-~~~G~G~~l~~---~~t~~~l~~~i~~~l~~~~~~~~~~~a~~~~~~~~~~~~--~~g~~~~~~~~~~ 457 (463)
+||+.||++++ + +|+|+.++. .++.++|.++|+++|.+++++.+|++++++++.+++|+. +||||.+.+++++
T Consensus 386 ~DQ~~na~~~~~~-~g~gv~~~~~~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av~~~~GGSS~~~l~~~v 464 (481)
T PLN02992 386 AEQNMNAALLSDE-LGIAVRSDDPKEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSLSIDGGGVAHESLCRVT 464 (481)
T ss_pred chhHHHHHHHHHH-hCeeEEecCCCCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Confidence 99999999995 7 799999965 489999999999999887778999999999999999994 5999999999999
Q ss_pred HHHhc
Q 012474 458 DHILS 462 (463)
Q Consensus 458 ~~~~~ 462 (463)
+.+.+
T Consensus 465 ~~~~~ 469 (481)
T PLN02992 465 KECQR 469 (481)
T ss_pred HHHHH
Confidence 98865
No 7
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=6.6e-62 Score=471.67 Aligned_cols=440 Identities=25% Similarity=0.407 Sum_probs=331.0
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEEEeCCCCCC-C----C----CCCCCceEEeCCCCCC-Cccccc
Q 012474 12 KKGRRVILFPLPLQGHINPMLQLASILYSKG--FSITIIHTNFNSP-N----P----SNYPHFSFNSISESLW-ESEVST 79 (463)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rG--h~Vt~~~~~~~~~-~----~----~~~~g~~~~~~~~~~~-~~~~~~ 79 (463)
|++.||+++|++++||++|++.||+.|+.+| ..|||++++.+.. . . ...++++|+.+|+... +.....
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~lA~~La~~gg~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~ 80 (468)
T PLN02207 1 MRNAELIFIPTPTVGHLVPFLEFARRLIEQDDRIRITILLMKLQGQSHLDTYVKSIASSQPFVRFIDVPELEEKPTLGGT 80 (468)
T ss_pred CCCcEEEEeCCcchhhHHHHHHHHHHHHhCCCCeEEEEEEcCCCcchhhHHhhhhccCCCCCeEEEEeCCCCCCCccccc
Confidence 3567999999999999999999999999998 9999999986541 0 1 1123699999995322 110112
Q ss_pred ccHHHHHHHHHHhcCchHHHHHHHHHhCCCCCCCc-eEEEeCCchhhHHHHHHHcCCCeEEEeCchhHHHHHHHHHHHHH
Q 012474 80 ENAISLLTVLNDKCVVPFQDCLAKLISNGDQEEPV-TCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILL 158 (463)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~p-D~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~ 158 (463)
.+....+..+...+.+.+++.+.++......+.+| ++||+|.+..|+..+|+++|||++.++++++..++.+.+.+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~~~ 160 (468)
T PLN02207 81 QSVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLADRH 160 (468)
T ss_pred cCHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhhcc
Confidence 34444444444556555565555554321100234 99999999999999999999999999999998887766543321
Q ss_pred Hhc-cccccccCCCCCCCccccCCC-CCCCcCCCCccccCCCchHHHHHHHHHhhccCCceEEEcchhhhhHHHHHHhhh
Q 012474 159 EKG-YLAEQVSFSSDSQLEKPVTEL-PPLRVKDIPIIVTHDTRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELTRLHK 236 (463)
Q Consensus 159 ~~~-~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~ 236 (463)
.+. ..+ .+ .......++++ +.+...+++....... . ...+.+......+++.+++||++++|++.++.++.
T Consensus 161 ~~~~~~~----~~-~~~~~~~vPgl~~~l~~~dlp~~~~~~~-~-~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~~~~~ 233 (468)
T PLN02207 161 SKDTSVF----VR-NSEEMLSIPGFVNPVPANVLPSALFVED-G-YDAYVKLAILFTKANGILVNSSFDIEPYSVNHFLD 233 (468)
T ss_pred ccccccC----cC-CCCCeEECCCCCCCCChHHCcchhcCCc-c-HHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHHh
Confidence 110 000 00 00112346776 4678888875432222 1 33333444457788999999999999998887754
Q ss_pred -cCCCCccccccccccccccCC-CcccccchhccccccCCCCeEEEEecCCcccCCHHHHHHHHHHHhcCCCceEEEEcC
Q 012474 237 -DFPIPMFPIGPFHKYCLASSS-SLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRP 314 (463)
Q Consensus 237 -~~~~~v~~vGpl~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~v~~~~~ 314 (463)
...++++.|||++........ .....+.++.+||++++.+++|||||||....+.+.+++++.+|+.+++++||++..
T Consensus 234 ~~~~p~v~~VGPl~~~~~~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~~r~ 313 (468)
T PLN02207 234 EQNYPSVYAVGPIFDLKAQPHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWSLRT 313 (468)
T ss_pred ccCCCcEEEecCCcccccCCCCccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEEEeC
Confidence 233569999999864321000 011123569999999888899999999999999999999999999999999999985
Q ss_pred CCCCCCccCCCCchhHHHHhcCCCceeeccChhhhhcCCCCcccccccChhhHHHHHhhCCceeccccccchhhhHHHHH
Q 012474 315 GLVPGVEWLEPLPKGFLEMLDGRGHIVKWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVS 394 (463)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~ 394 (463)
..... .+.+|+++.++.++|+.+++|+||.+||+|+++++||||||+||+.||+++|||||++|+++||+.||++++
T Consensus 314 ~~~~~---~~~lp~~f~er~~~~g~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~ 390 (468)
T PLN02207 314 EEVTN---DDLLPEGFLDRVSGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMV 390 (468)
T ss_pred CCccc---cccCCHHHHhhcCCCeEEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccchhhHHHHH
Confidence 32101 234889999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred HHhhceeecC------C--ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012474 395 HVWRVGLHLE------R--KFERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILS 462 (463)
Q Consensus 395 ~~~G~G~~l~------~--~~t~~~l~~~i~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 462 (463)
+.+|+|+.+. . .++.++|.++|+++|.+ ++++||+||+++++.+++|+.+||||.++++++++.+..
T Consensus 391 ~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~-~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l~~~v~~~~~ 465 (468)
T PLN02207 391 KELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNK-DNNVVRKRVMDISQMIQRATKNGGSSFAAIEKFIHDVIG 465 (468)
T ss_pred HHhCceEEEecccccccCCcccHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHh
Confidence 6469999662 1 35999999999999973 247999999999999999999999999999999998863
No 8
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=2.4e-62 Score=475.28 Aligned_cols=433 Identities=25% Similarity=0.385 Sum_probs=324.0
Q ss_pred CCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC-----CCCCceEEeCC----CCCCCccccccc
Q 012474 11 QKKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPS-----NYPHFSFNSIS----ESLWESEVSTEN 81 (463)
Q Consensus 11 ~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~-----~~~g~~~~~~~----~~~~~~~~~~~~ 81 (463)
...+.||+++|++++||++|++.||+.|+.||+.|||++++.+..... ...+++++.+| ++++++.+...+
T Consensus 3 ~~~~~HVvl~P~paqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~i~~~~lp~p~~dglp~~~~~~~~ 82 (472)
T PLN02670 3 REEVLHVAMFPWLAMGHLIPFLRLSKLLAQKGHKISFISTPRNLHRLPKIPSQLSSSITLVSFPLPSVPGLPSSAESSTD 82 (472)
T ss_pred CCCCcEEEEeCChhhhHHHHHHHHHHHHHhCCCEEEEEeCCchHHhhhhccccCCCCeeEEECCCCccCCCCCCcccccc
Confidence 345679999999999999999999999999999999999987653222 11358899888 566655433223
Q ss_pred HH----HHHHHHHHhcCchHHHHHHHHHhCCCCCCCceEEEeCCchhhHHHHHHHcCCCeEEEeCchhHHHHHHHHHHHH
Q 012474 82 AI----SLLTVLNDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQIL 157 (463)
Q Consensus 82 ~~----~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~pD~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~ 157 (463)
.. ..+....+. +.+.++++.+. .++++||+|.+..|+..+|+++|||++.++++++..++.+.+....
T Consensus 83 ~~~~~~~~~~~~~~~----~~~~~~~~l~~----~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~ 154 (472)
T PLN02670 83 VPYTKQQLLKKAFDL----LEPPLTTFLET----SKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSL 154 (472)
T ss_pred cchhhHHHHHHHHHH----hHHHHHHHHHh----CCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhh
Confidence 21 122233333 34444444432 3589999999999999999999999999999999888775533222
Q ss_pred HHhccccccccCCCCCCCccccCCCC------CCCcCCCCcccc--CCCchHHHHHHHHHhhccCCceEEEcchhhhhHH
Q 012474 158 LEKGYLAEQVSFSSDSQLEKPVTELP------PLRVKDIPIIVT--HDTRNFHQLISAVVSKTKACSGLIWNSFEDLEQT 229 (463)
Q Consensus 158 ~~~~~~p~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~ 229 (463)
...+..+.. .... ..++++. .++..+++.... .........+.+......+++.+++|||.+||+.
T Consensus 155 ~~~~~~~~~-----~~~~-~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~ 228 (472)
T PLN02670 155 MEGGDLRST-----AEDF-TVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPE 228 (472)
T ss_pred hhcccCCCc-----cccc-cCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHH
Confidence 111111111 0010 0122221 133345553221 1111222223333344667889999999999999
Q ss_pred HHHHhhhcCCCCccccccccccc-cccCCCcc--cccchhccccccCCCCeEEEEecCCcccCCHHHHHHHHHHHhcCCC
Q 012474 230 ELTRLHKDFPIPMFPIGPFHKYC-LASSSSLL--SQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRV 306 (463)
Q Consensus 230 ~~~~~~~~~~~~v~~vGpl~~~~-~~~~~~~~--~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~ 306 (463)
.++.+++.++++++.|||+.... ........ ..+.++.+|||+++++++|||||||....+.+.+.+++.+|+.+++
T Consensus 229 ~l~~l~~~~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~ 308 (472)
T PLN02670 229 WFDLLSDLYRKPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSET 308 (472)
T ss_pred HHHHHHHhhCCCeEEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCC
Confidence 99999876567899999997531 10000101 1235689999998888999999999999999999999999999999
Q ss_pred ceEEEEcCCCCCCCccCCCCchhHHHHhcCCCcee-eccChhhhhcCCCCcccccccChhhHHHHHhhCCceeccccccc
Q 012474 307 PFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIV-KWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGD 385 (463)
Q Consensus 307 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~D 385 (463)
+|||++........+....+|++|.++..+++.++ +|+||.+||+|+++++||||||+||+.||+++|||||++|+++|
T Consensus 309 ~FlWv~r~~~~~~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~D 388 (472)
T PLN02670 309 PFFWVLRNEPGTTQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNE 388 (472)
T ss_pred CEEEEEcCCcccccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhc
Confidence 99999985321111112358999999999888886 99999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHhhceeecCC-----ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 012474 386 QLVNARYVSHVWRVGLHLER-----KFERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHI 460 (463)
Q Consensus 386 Q~~na~rv~~~~G~G~~l~~-----~~t~~~l~~~i~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 460 (463)
|+.||+++++ +|+|+.++. .++.++|.++|+++|.+++|++||+||+++++.++ ..++..++++++++++
T Consensus 389 Q~~Na~~v~~-~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~----~~~~~~~~~~~~~~~l 463 (472)
T PLN02670 389 QGLNTRLLHG-KKLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFG----DMDRNNRYVDELVHYL 463 (472)
T ss_pred cHHHHHHHHH-cCeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHh----CcchhHHHHHHHHHHH
Confidence 9999999999 699999964 38999999999999988667789999999999999 7899999999999998
Q ss_pred hc
Q 012474 461 LS 462 (463)
Q Consensus 461 ~~ 462 (463)
.+
T Consensus 464 ~~ 465 (472)
T PLN02670 464 RE 465 (472)
T ss_pred HH
Confidence 75
No 9
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=7.7e-62 Score=473.92 Aligned_cols=427 Identities=29% Similarity=0.507 Sum_probs=325.6
Q ss_pred CCCCcEEEEEcCCCccCHHHHHHHHHH--HHhCCCeEEEEeCCCCCCCCCC----CCCceEEeCCCCCCCcccccccHHH
Q 012474 11 QKKGRRVILFPLPLQGHINPMLQLASI--LYSKGFSITIIHTNFNSPNPSN----YPHFSFNSISESLWESEVSTENAIS 84 (463)
Q Consensus 11 ~~~~~~il~~~~~~~GH~~p~l~La~~--L~~rGh~Vt~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~ 84 (463)
...+.||+++|+|++||++|++.||+. |++||++|||++++.+...... ...+++..++++++++.. .+...
T Consensus 5 ~~~~~hvv~~P~pa~GHi~P~l~La~~L~L~~~G~~VT~v~t~~~~~~~~~~~~~~~~~~~~~~~~glp~~~~--~~~~~ 82 (456)
T PLN02210 5 EGQETHVLMVTLAFQGHINPMLKLAKHLSLSSKNLHFTLATTEQARDLLSTVEKPRRPVDLVFFSDGLPKDDP--RAPET 82 (456)
T ss_pred CCCCCEEEEeCCcccccHHHHHHHHHHHHhhcCCcEEEEEeccchhhhhccccCCCCceEEEECCCCCCCCcc--cCHHH
Confidence 455789999999999999999999999 5699999999999866433221 235777777777776542 23334
Q ss_pred HHHHHHHhcCchHHHHHHHHHhCCCCCCCceEEEeCCchhhHHHHHHHcCCCeEEEeCchhHHHHHHHHHHHHHHhcccc
Q 012474 85 LLTVLNDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYLA 164 (463)
Q Consensus 85 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~pD~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~p 164 (463)
++..+.+.+.+. ++++.+. .+||+||+|.+..|+..+|+++|||.+.+++.++..+..+.+.... ....+
T Consensus 83 ~~~~~~~~~~~~----l~~~l~~----~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~--~~~~~ 152 (456)
T PLN02210 83 LLKSLNKVGAKN----LSKIIEE----KRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMK--TNSFP 152 (456)
T ss_pred HHHHHHHhhhHH----HHHHHhc----CCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhc--cCCCC
Confidence 454444444333 3444332 4699999999999999999999999999999999888776543211 01011
Q ss_pred ccccCCCCCCCccccCCCCCCCcCCCCccccCCCchHH-HHHHHHHhhccCCceEEEcchhhhhHHHHHHhhhcCCCCcc
Q 012474 165 EQVSFSSDSQLEKPVTELPPLRVKDIPIIVTHDTRNFH-QLISAVVSKTKACSGLIWNSFEDLEQTELTRLHKDFPIPMF 243 (463)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~v~ 243 (463)
.. . ...-...+++++.+...+++......+.... ............++.+++||+.++|...++.+++ . .+++
T Consensus 153 ~~---~-~~~~~~~~Pgl~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~-~-~~v~ 226 (456)
T PLN02210 153 DL---E-DLNQTVELPALPLLEVRDLPSFMLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMAD-L-KPVI 226 (456)
T ss_pred cc---c-ccCCeeeCCCCCCCChhhCChhhhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhh-c-CCEE
Confidence 10 0 0001123566666677777753322222222 2333444455678899999999999999988776 2 5799
Q ss_pred ccccccccc---ccc----CC---CcccccchhccccccCCCCeEEEEecCCcccCCHHHHHHHHHHHhcCCCceEEEEc
Q 012474 244 PIGPFHKYC---LAS----SS---SLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVR 313 (463)
Q Consensus 244 ~vGpl~~~~---~~~----~~---~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~v~~~~ 313 (463)
+|||++... ... .. ..+..+.++.+||+.++++++|||||||....+.+++++++.+|+..++++||+++
T Consensus 227 ~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~ 306 (456)
T PLN02210 227 PIGPLVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIR 306 (456)
T ss_pred EEcccCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEe
Confidence 999997421 100 00 01233456889999988889999999999888999999999999999999999997
Q ss_pred CCCCCCCccCCCCchhHHHHh-cCCCceeeccChhhhhcCCCCcccccccChhhHHHHHhhCCceeccccccchhhhHHH
Q 012474 314 PGLVPGVEWLEPLPKGFLEML-DGRGHIVKWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARY 392 (463)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~~na~r 392 (463)
.... ...++.+.++. ++|+++++|+||.+||+|+++++||||||+||+.||+++|||||++|+++||+.||++
T Consensus 307 ~~~~------~~~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~ 380 (456)
T PLN02210 307 PKEK------AQNVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARL 380 (456)
T ss_pred CCcc------ccchhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHHHHH
Confidence 5321 11334565665 4788889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhceeecCC-----ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 012474 393 VSHVWRVGLHLER-----KFERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHIL 461 (463)
Q Consensus 393 v~~~~G~G~~l~~-----~~t~~~l~~~i~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 461 (463)
+++.+|+|+.+.. .++.++|.++|+++|.+++++.+|+||++|++..++|+.+||||.+.++++++.|.
T Consensus 381 ~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~~~~ 454 (456)
T PLN02210 381 LVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLDLFISDIT 454 (456)
T ss_pred HHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 9864699999853 48999999999999988767889999999999999999999999999999999885
No 10
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=8.7e-62 Score=474.85 Aligned_cols=441 Identities=26% Similarity=0.422 Sum_probs=327.1
Q ss_pred ccCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC----CCCCceEEeCC----CCCCCcccccc
Q 012474 9 VQQKKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPS----NYPHFSFNSIS----ESLWESEVSTE 80 (463)
Q Consensus 9 ~~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~----~~~g~~~~~~~----~~~~~~~~~~~ 80 (463)
.+...+.||+++|+|++||++|++.||+.|+.+|+.|||++++.+..... ..++++++.+| .+++++.+...
T Consensus 4 ~~~~~~~HVvl~PfpaqGHi~P~l~LAk~La~~G~~VTfv~T~~n~~~~~~~~~~~~~i~~~~lp~P~~~~lPdG~~~~~ 83 (477)
T PLN02863 4 LNKPAGTHVLVFPFPAQGHMIPLLDLTHRLALRGLTITVLVTPKNLPFLNPLLSKHPSIETLVLPFPSHPSIPSGVENVK 83 (477)
T ss_pred cccCCCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCCcHHHHhhhcccCCCeeEEeCCCCCcCCCCCCCcChh
Confidence 34567899999999999999999999999999999999999987653221 12357777655 24555544332
Q ss_pred cHH----HHHHHHHHhcCchHHHHHHHHHhCCCCCCCceEEEeCCchhhHHHHHHHcCCCeEEEeCchhHHHHHHHHHHH
Q 012474 81 NAI----SLLTVLNDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQI 156 (463)
Q Consensus 81 ~~~----~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~pD~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~ 156 (463)
+.. ..+......+...+.+.+.+. + .+|++||+|.+..|+..+|+++|||++.++++++..++.+.+...
T Consensus 84 ~~~~~~~~~~~~a~~~~~~~~~~~l~~~----~--~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~ 157 (477)
T PLN02863 84 DLPPSGFPLMIHALGELYAPLLSWFRSH----P--SPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWR 157 (477)
T ss_pred hcchhhHHHHHHHHHHhHHHHHHHHHhC----C--CCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhh
Confidence 221 122222223333333333331 1 467999999999999999999999999999999999888776432
Q ss_pred HHHhccccccccCCCC-CCC-ccccCCCCCCCcCCCCcccc--CCCchHHHHHHHHHhhccCCceEEEcchhhhhHHHHH
Q 012474 157 LLEKGYLAEQVSFSSD-SQL-EKPVTELPPLRVKDIPIIVT--HDTRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELT 232 (463)
Q Consensus 157 ~~~~~~~p~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~ 232 (463)
. .+........ ... ...+++++.++..+++.... .........+.+.......++.+++|||.+||+..++
T Consensus 158 ~-----~~~~~~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~ 232 (477)
T PLN02863 158 E-----MPTKINPDDQNEILSFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLE 232 (477)
T ss_pred c-----ccccccccccccccccCCCCCCCCcChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHH
Confidence 1 1111000000 011 11356666677777774331 1122233344343444556788999999999999999
Q ss_pred HhhhcCC-CCcccccccccccccc------CCCcccccchhccccccCCCCeEEEEecCCcccCCHHHHHHHHHHHhcCC
Q 012474 233 RLHKDFP-IPMFPIGPFHKYCLAS------SSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSR 305 (463)
Q Consensus 233 ~~~~~~~-~~v~~vGpl~~~~~~~------~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~ 305 (463)
.+++.++ ++++.|||+....... +......++++.+||+.++++++|||||||....+.+.+.+++.+|+..+
T Consensus 233 ~~~~~~~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~ 312 (477)
T PLN02863 233 HLKKELGHDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSG 312 (477)
T ss_pred HHHhhcCCCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCC
Confidence 9988665 5799999997532110 00001123568999999888899999999999989999999999999999
Q ss_pred CceEEEEcCCCCCCCccCCCCchhHHHHhcCCCce-eeccChhhhhcCCCCcccccccChhhHHHHHhhCCceecccccc
Q 012474 306 VPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHI-VKWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFG 384 (463)
Q Consensus 306 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~ 384 (463)
+++||+++...... .....+|+++.++..++..+ .+|+||.+||+|+++++||||||+||++||+++|||||++|+++
T Consensus 313 ~~flw~~~~~~~~~-~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~ 391 (477)
T PLN02863 313 VHFIWCVKEPVNEE-SDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAA 391 (477)
T ss_pred CcEEEEECCCcccc-cchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccc
Confidence 99999997532111 11234889998887655554 59999999999999999999999999999999999999999999
Q ss_pred chhhhHHHHHHHhhceeecCC----ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 012474 385 DQLVNARYVSHVWRVGLHLER----KFERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHI 460 (463)
Q Consensus 385 DQ~~na~rv~~~~G~G~~l~~----~~t~~~l~~~i~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 460 (463)
||+.||+++++.||+|+++.. ..+.+++.++|+++|.+ ++.||+||+++++.+++|+.+|||+.+.++++++.+
T Consensus 392 DQ~~na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~--~~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~i 469 (477)
T PLN02863 392 DQFVNASLLVDELKVAVRVCEGADTVPDSDELARVFMESVSE--NQVERERAKELRRAALDAIKERGSSVKDLDGFVKHV 469 (477)
T ss_pred cchhhHHHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 999999997643799999943 36899999999999942 178999999999999999999999999999999998
Q ss_pred hcC
Q 012474 461 LSF 463 (463)
Q Consensus 461 ~~~ 463 (463)
.++
T Consensus 470 ~~~ 472 (477)
T PLN02863 470 VEL 472 (477)
T ss_pred HHh
Confidence 753
No 11
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=4.5e-61 Score=471.53 Aligned_cols=436 Identities=29% Similarity=0.445 Sum_probs=332.2
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCC----CeEEEEeCCCCCC----C--------CCCCCCceEEeCCCCCCCc
Q 012474 12 KKGRRVILFPLPLQGHINPMLQLASILYSKG----FSITIIHTNFNSP----N--------PSNYPHFSFNSISESLWES 75 (463)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rG----h~Vt~~~~~~~~~----~--------~~~~~g~~~~~~~~~~~~~ 75 (463)
+.+.||+++|++++||++|++.||+.|+.+| +.|||++++.+.. . .....+++++.+|+...+.
T Consensus 1 ~~~~HVVlvPfpaqGHi~P~l~LAk~La~~g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~ 80 (480)
T PLN00164 1 MAAPTVVLLPVWGSGHLMSMLEAGKRLLASSGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVEPPT 80 (480)
T ss_pred CCCCEEEEeCCcchhHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCCCCC
Confidence 4577999999999999999999999999997 7999999865421 0 0011258999999653221
Q ss_pred ccccccHHHHHHHHHHhcCchHHHHHHHHHhCCCCCCCceEEEeCCchhhHHHHHHHcCCCeEEEeCchhHHHHHHHHHH
Q 012474 76 EVSTENAISLLTVLNDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQ 155 (463)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~pD~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~ 155 (463)
. ..+...++..+...+.+.+.+.+..+. .++++||+|.+..|+..+|+++|||++.++++++..++.+.+.+
T Consensus 81 ~--~e~~~~~~~~~~~~~~~~l~~~L~~l~------~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~ 152 (480)
T PLN00164 81 D--AAGVEEFISRYIQLHAPHVRAAIAGLS------CPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLP 152 (480)
T ss_pred c--cccHHHHHHHHHHhhhHHHHHHHHhcC------CCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhh
Confidence 1 112334444444555555666555541 35799999999999999999999999999999999888776654
Q ss_pred HHHHhccccccccCCCCCCCccccCCCCCCCcCCCCccccCCCchHHHHHHHHHhhccCCceEEEcchhhhhHHHHHHhh
Q 012474 156 ILLEKGYLAEQVSFSSDSQLEKPVTELPPLRVKDIPIIVTHDTRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELTRLH 235 (463)
Q Consensus 156 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~ 235 (463)
..... .+. ++. .......+++++.++..+++.............+....+...+++.+++|||.+||+...+.++
T Consensus 153 ~~~~~--~~~--~~~-~~~~~~~iPGlp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~ 227 (480)
T PLN00164 153 ALDEE--VAV--EFE-EMEGAVDVPGLPPVPASSLPAPVMDKKSPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAIA 227 (480)
T ss_pred hhccc--ccC--ccc-ccCcceecCCCCCCChHHCCchhcCCCcHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHHH
Confidence 32111 110 000 0001123677777778888854422322223333344455677899999999999999998887
Q ss_pred hcC------CCCccccccccccccccCCCcccccchhccccccCCCCeEEEEecCCcccCCHHHHHHHHHHHhcCCCceE
Q 012474 236 KDF------PIPMFPIGPFHKYCLASSSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFL 309 (463)
Q Consensus 236 ~~~------~~~v~~vGpl~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~v 309 (463)
..+ .++++.|||+...... ....+.+.++.+||++++.+++|||||||....+.+.+.+++.+|+..++++|
T Consensus 228 ~~~~~~~~~~~~v~~vGPl~~~~~~--~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~fl 305 (480)
T PLN00164 228 DGRCTPGRPAPTVYPIGPVISLAFT--PPAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFL 305 (480)
T ss_pred hccccccCCCCceEEeCCCcccccc--CCCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCEE
Confidence 642 1469999999743211 01123456799999998888999999999988899999999999999999999
Q ss_pred EEEcCCCCCC------CccCCCCchhHHHHhcCCCcee-eccChhhhhcCCCCcccccccChhhHHHHHhhCCceecccc
Q 012474 310 WVVRPGLVPG------VEWLEPLPKGFLEMLDGRGHIV-KWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPC 382 (463)
Q Consensus 310 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~ 382 (463)
|++......+ .+....+|+++.++..+++.++ +|+||.+||+|+++++|||||||||+.||+++|||||++|+
T Consensus 306 Wv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P~ 385 (480)
T PLN00164 306 WVLRGPPAAGSRHPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPL 385 (480)
T ss_pred EEEcCCcccccccccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeCCc
Confidence 9998532100 0111237899999988888887 99999999999999999999999999999999999999999
Q ss_pred ccchhhhHHHHHHHhhceeecCC------ccCHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHhhCCChHHHHH
Q 012474 383 FGDQLVNARYVSHVWRVGLHLER------KFERREIETAIRRVTVEA--EGQEMRERIMHLKEKLELSLLEAGSSYQSLE 454 (463)
Q Consensus 383 ~~DQ~~na~rv~~~~G~G~~l~~------~~t~~~l~~~i~~~l~~~--~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~ 454 (463)
++||+.||+++++.+|+|+.+.. .++.++|.++|+++|.++ +++.+|++|++|++++++|+.+|||+.+.++
T Consensus 386 ~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~gGSS~~~l~ 465 (480)
T PLN00164 386 YAEQHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEEGGSSYAALQ 465 (480)
T ss_pred cccchhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 99999999887543799999852 369999999999999874 3788999999999999999999999999999
Q ss_pred HHHHHHhc
Q 012474 455 RLVDHILS 462 (463)
Q Consensus 455 ~~~~~~~~ 462 (463)
++++.+.+
T Consensus 466 ~~v~~~~~ 473 (480)
T PLN00164 466 RLAREIRH 473 (480)
T ss_pred HHHHHHHh
Confidence 99999864
No 12
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=1.1e-60 Score=462.43 Aligned_cols=426 Identities=29% Similarity=0.470 Sum_probs=329.7
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCCCC-CC-CC---CCCCceEEeCCCCCCCcccc-cccHHHH
Q 012474 13 KGRRVILFPLPLQGHINPMLQLASILYS-KGFSITIIHTNFNS-PN-PS---NYPHFSFNSISESLWESEVS-TENAISL 85 (463)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~~-~~-~~---~~~g~~~~~~~~~~~~~~~~-~~~~~~~ 85 (463)
.+.||+++|++++||++|++.||+.|+. +|+.|||++++.+. .. .. ..++++++.++++++++... ..+....
T Consensus 2 ~~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~~~~~~~~~~~~~i~~~~i~dglp~g~~~~~~~~~~~ 81 (455)
T PLN02152 2 APPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIHRSMIPNHNNVENLSFLTFSDGFDDGVISNTDDVQNR 81 (455)
T ss_pred CCcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhhhhhhccCCCCCCEEEEEcCCCCCCccccccccHHHH
Confidence 4569999999999999999999999996 69999999997542 11 11 11369999999888765432 3345556
Q ss_pred HHHHHHhcCchHHHHHHHHHhCCCCCCCceEEEeCCchhhHHHHHHHcCCCeEEEeCchhHHHHHHHHHHHHHHhccccc
Q 012474 86 LTVLNDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYLAE 165 (463)
Q Consensus 86 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~pD~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~ 165 (463)
+..+...+...+.+.++++.... .++++||+|.+..|+..+|+++|||++.++++++..++.+.+... . .
T Consensus 82 ~~~~~~~~~~~l~~~l~~l~~~~---~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~----~-~-- 151 (455)
T PLN02152 82 LVNFERNGDKALSDFIEANLNGD---SPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYST----G-N-- 151 (455)
T ss_pred HHHHHHhccHHHHHHHHHhhccC---CCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhc----c-C--
Confidence 66666778888888888765321 345999999999999999999999999999999998877654321 0 0
Q ss_pred cccCCCCCCCccccCCCCCCCcCCCCccccC--CCchHHHHHHHHHhhcc--CCceEEEcchhhhhHHHHHHhhhcCCCC
Q 012474 166 QVSFSSDSQLEKPVTELPPLRVKDIPIIVTH--DTRNFHQLISAVVSKTK--ACSGLIWNSFEDLEQTELTRLHKDFPIP 241 (463)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~~l~~s~~~le~~~~~~~~~~~~~~ 241 (463)
. ....+++++.++..+++..... .+..+.+.+.+..+... .++.+++|||.+||+..++.++. .+
T Consensus 152 ------~--~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~---~~ 220 (455)
T PLN02152 152 ------N--SVFEFPNLPSLEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN---IE 220 (455)
T ss_pred ------C--CeeecCCCCCCchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc---CC
Confidence 0 1123566666777777754321 12223344434334332 24689999999999998887755 37
Q ss_pred cccccccccccc--ccC-CC--c-ccccchhccccccCCCCeEEEEecCCcccCCHHHHHHHHHHHhcCCCceEEEEcCC
Q 012474 242 MFPIGPFHKYCL--ASS-SS--L-LSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPG 315 (463)
Q Consensus 242 v~~vGpl~~~~~--~~~-~~--~-~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~v~~~~~~ 315 (463)
++.|||+..... ... .. . ...+.++.+||++++.+++|||||||...++.+.+++++.+|+..+++|||++...
T Consensus 221 v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~ 300 (455)
T PLN02152 221 MVAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDK 300 (455)
T ss_pred EEEEcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecC
Confidence 999999975321 000 01 1 12234699999998888999999999999999999999999999999999999753
Q ss_pred CCC-----CCc-cCCCCchhHHHHhcCCCceeeccChhhhhcCCCCcccccccChhhHHHHHhhCCceeccccccchhhh
Q 012474 316 LVP-----GVE-WLEPLPKGFLEMLDGRGHIVKWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVN 389 (463)
Q Consensus 316 ~~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~~n 389 (463)
... +.+ ....+|+++.++.++|+++++|+||.+||+|+++++||||||+||+.||+++|||+|++|+++||+.|
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~f~e~~~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~n 380 (455)
T PLN02152 301 LNREAKIEGEEETEIEKIAGFRHELEEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQPAN 380 (455)
T ss_pred cccccccccccccccccchhHHHhccCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccchHH
Confidence 110 000 01124788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhceeecC--C--ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 012474 390 ARYVSHVWRVGLHLE--R--KFERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHI 460 (463)
Q Consensus 390 a~rv~~~~G~G~~l~--~--~~t~~~l~~~i~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 460 (463)
|+++++.||+|+.+. . .++.++|.++|+++|+|+ +..||++|+++++.++++..+||+++++++++++.|
T Consensus 381 a~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~~-~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~li~~i 454 (455)
T PLN02152 381 AKLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEEK-SVELRESAEKWKRLAIEAGGEGGSSDKNVEAFVKTL 454 (455)
T ss_pred HHHHHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 999988456776663 2 469999999999999753 356999999999999999999999999999999986
No 13
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=4.5e-61 Score=464.50 Aligned_cols=426 Identities=28% Similarity=0.466 Sum_probs=320.0
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEE--EeCCCCCCC-------C-CCCCCceEEeCCCCCCCcc--cc
Q 012474 13 KGRRVILFPLPLQGHINPMLQLASILYSKG--FSITI--IHTNFNSPN-------P-SNYPHFSFNSISESLWESE--VS 78 (463)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rG--h~Vt~--~~~~~~~~~-------~-~~~~g~~~~~~~~~~~~~~--~~ 78 (463)
.+-||+++|++++||++|++.||+.|+.+| +.||+ ++++.+... . ...++++++.+|...+... ..
T Consensus 2 ~~~Hvvl~P~p~qGHi~P~l~LA~~La~~g~~~~vti~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~~~ 81 (451)
T PLN03004 2 GEEAIVLYPAPPIGHLVSMVELGKTILSKNPSLSIHIILVPPPYQPESTATYISSVSSSFPSITFHHLPAVTPYSSSSTS 81 (451)
T ss_pred CCcEEEEeCCcccchHHHHHHHHHHHHhCCCceEEEEEEecCcchhhhhhhhhccccCCCCCeEEEEcCCCCCCCCcccc
Confidence 467999999999999999999999999998 45555 554432211 1 1124699999986553211 12
Q ss_pred cccHHHHHHHHHHhcCchHHHHHHHHHhCCCCCCCceEEEeCCchhhHHHHHHHcCCCeEEEeCchhHHHHHHHHHHHHH
Q 012474 79 TENAISLLTVLNDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILL 158 (463)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~pD~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~ 158 (463)
..+....+..+...+...+.+.+.++... .++++||+|.+..|+..+|+++|||++.++++++..++.+.+.+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~----~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~ 157 (451)
T PLN03004 82 RHHHESLLLEILCFSNPSVHRTLFSLSRN----FNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTID 157 (451)
T ss_pred ccCHHHHHHHHHHhhhHHHHHHHHhcCCC----CCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhcc
Confidence 12333344344456666676777665321 24599999999999999999999999999999999888877644321
Q ss_pred HhccccccccCCCCCCCccccCCCCCCCcCCCCccccCCCchHHHHHHHHHhhccCCceEEEcchhhhhHHHHHHhhhcC
Q 012474 159 EKGYLAEQVSFSSDSQLEKPVTELPPLRVKDIPIIVTHDTRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELTRLHKDF 238 (463)
Q Consensus 159 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~ 238 (463)
.. .+.. .. .......+++++.++..+++...........+.+........+++.+++|||.+||...++.+++.+
T Consensus 158 ~~--~~~~-~~--~~~~~v~iPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~~ 232 (451)
T PLN03004 158 ET--TPGK-NL--KDIPTVHIPGVPPMKGSDMPKAVLERDDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITEEL 232 (451)
T ss_pred cc--cccc-cc--ccCCeecCCCCCCCChHHCchhhcCCchHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHhcC
Confidence 11 0100 00 1111124677777777888854422333334444555556677889999999999999999887754
Q ss_pred C-CCccccccccccccccCCCcccccchhccccccCCCCeEEEEecCCcccCCHHHHHHHHHHHhcCCCceEEEEcCCCC
Q 012474 239 P-IPMFPIGPFHKYCLASSSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLV 317 (463)
Q Consensus 239 ~-~~v~~vGpl~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~ 317 (463)
. ++++.|||+....... ......+.++.+||+.++++++|||||||....+.+.+++++.+|+..+++|||++.....
T Consensus 233 ~~~~v~~vGPl~~~~~~~-~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~ 311 (451)
T PLN03004 233 CFRNIYPIGPLIVNGRIE-DRNDNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPE 311 (451)
T ss_pred CCCCEEEEeeeccCcccc-ccccchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCcc
Confidence 3 5799999997532210 0111123458999999888999999999999999999999999999999999999985311
Q ss_pred CCC--ccCCC-CchhHHHHhcCCCce-eeccChhhhhcCCCCcccccccChhhHHHHHhhCCceeccccccchhhhHHHH
Q 012474 318 PGV--EWLEP-LPKGFLEMLDGRGHI-VKWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYV 393 (463)
Q Consensus 318 ~~~--~~~~~-~~~~~~~~~~~~~~~-~~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv 393 (463)
... ..... +|++|.++..++..+ .+|+||.+||+|+++++||||||+||+.||+++|||||++|++.||+.||+++
T Consensus 312 ~~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~ 391 (451)
T PLN03004 312 LEKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFNRVMI 391 (451)
T ss_pred ccccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchhhHHHH
Confidence 000 01222 789999998766654 59999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhceeecCC----ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhCCChHH
Q 012474 394 SHVWRVGLHLER----KFERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQ 451 (463)
Q Consensus 394 ~~~~G~G~~l~~----~~t~~~l~~~i~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~ 451 (463)
++.+|+|++++. .++.++|.++|+++|+| ++||++++++++..+.|+.+||||.+
T Consensus 392 ~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~---~~~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 392 VDEIKIAISMNESETGFVSSTEVEKRVQEIIGE---CPVRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred HHHhCceEEecCCcCCccCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 754799999964 47999999999999998 89999999999999999999999875
No 14
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=8.4e-61 Score=471.57 Aligned_cols=435 Identities=28% Similarity=0.469 Sum_probs=327.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEEEeCCCCCCC-------C---CC--CCCceEEeCCCCCCCccccc
Q 012474 14 GRRVILFPLPLQGHINPMLQLASILYSKG--FSITIIHTNFNSPN-------P---SN--YPHFSFNSISESLWESEVST 79 (463)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~La~~L~~rG--h~Vt~~~~~~~~~~-------~---~~--~~g~~~~~~~~~~~~~~~~~ 79 (463)
|+||+++|++++||++|++.||+.|+.+| ..|||++++.+... . .. .++++++.+|+..++...
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~-- 79 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDSDDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQPTTE-- 79 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhCCCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCCccc--
Confidence 68999999999999999999999999998 88999999766431 1 11 236999999865542211
Q ss_pred ccHHHHHHHHHHhcCchHHHHHHHHHhCCCC-CCCc-eEEEeCCchhhHHHHHHHcCCCeEEEeCchhHHHHHHHHHHHH
Q 012474 80 ENAISLLTVLNDKCVVPFQDCLAKLISNGDQ-EEPV-TCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQIL 157 (463)
Q Consensus 80 ~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~-~~~p-D~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~ 157 (463)
. . .+..+...+...+.+.++++.....+ +.+| ++||+|.+..|+..+|+++|||++.++++++..++.+.+.+..
T Consensus 80 -~-~-~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~~ 156 (481)
T PLN02554 80 -D-P-TFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQML 156 (481)
T ss_pred -c-h-HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhhh
Confidence 1 1 22223344555666666666532100 0234 8999999999999999999999999999999999887765443
Q ss_pred HHhccccccccCCCCCCCccccCCCC-CCCcCCCCccccCCCchHHHHHHHHHhhccCCceEEEcchhhhhHHHHHHhhh
Q 012474 158 LEKGYLAEQVSFSSDSQLEKPVTELP-PLRVKDIPIIVTHDTRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELTRLHK 236 (463)
Q Consensus 158 ~~~~~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~ 236 (463)
......+.. ++. +......++++. .++..+++.... .+.+...+.+......+++.+++||+.++|......+.+
T Consensus 157 ~~~~~~~~~-~~~-~~~~~v~iPgl~~pl~~~dlp~~~~--~~~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~l~~ 232 (481)
T PLN02554 157 YDEKKYDVS-ELE-DSEVELDVPSLTRPYPVKCLPSVLL--SKEWLPLFLAQARRFREMKGILVNTVAELEPQALKFFSG 232 (481)
T ss_pred ccccccCcc-ccC-CCCceeECCCCCCCCCHHHCCCccc--CHHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHh
Confidence 211101100 110 111112366653 566667764332 123334444445566788999999999999988887775
Q ss_pred c--CCCCccccccccc-cccccCCCcccccchhccccccCCCCeEEEEecCCcccCCHHHHHHHHHHHhcCCCceEEEEc
Q 012474 237 D--FPIPMFPIGPFHK-YCLASSSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVR 313 (463)
Q Consensus 237 ~--~~~~v~~vGpl~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~v~~~~ 313 (463)
. ..++++.|||+.. ..+. .....+...++.+||++++.+++|||||||....+.+.+.+++.+|+..++++||+++
T Consensus 233 ~~~~~~~v~~vGpl~~~~~~~-~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW~~~ 311 (481)
T PLN02554 233 SSGDLPPVYPVGPVLHLENSG-DDSKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLWSLR 311 (481)
T ss_pred cccCCCCEEEeCCCccccccc-cccccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEEEEc
Confidence 3 2357999999943 2221 0000122346999999987789999999999888999999999999999999999997
Q ss_pred CCCC------CC--CccCCCCchhHHHHhcCCCceeeccChhhhhcCCCCcccccccChhhHHHHHhhCCceeccccccc
Q 012474 314 PGLV------PG--VEWLEPLPKGFLEMLDGRGHIVKWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGD 385 (463)
Q Consensus 314 ~~~~------~~--~~~~~~~~~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~D 385 (463)
.... .+ .+..+.+|+++.++.++|+++++|+||.+||.|+++++||||||+||+.||+++|||||++|+++|
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~lp~~~~~r~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~P~~~D 391 (481)
T PLN02554 312 RASPNIMKEPPGEFTNLEEILPEGFLDRTKDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWPLYAE 391 (481)
T ss_pred CCcccccccccccccchhhhCChHHHHHhccCceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEEecCcccc
Confidence 5210 00 000112689999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhH-HHHHHHhhceeecC------------CccCHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHhhCCChHH
Q 012474 386 QLVNA-RYVSHVWRVGLHLE------------RKFERREIETAIRRVTV-EAEGQEMRERIMHLKEKLELSLLEAGSSYQ 451 (463)
Q Consensus 386 Q~~na-~rv~~~~G~G~~l~------------~~~t~~~l~~~i~~~l~-~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~ 451 (463)
|+.|| .++++ +|+|+.++ ..++.++|.++|+++|. | ++||++|+++++.+++|+.+||++.+
T Consensus 392 Q~~Na~~~v~~-~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~---~~~r~~a~~l~~~~~~av~~gGss~~ 467 (481)
T PLN02554 392 QKFNAFEMVEE-LGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQD---SDVRKRVKEMSEKCHVALMDGGSSHT 467 (481)
T ss_pred chhhHHHHHHH-hCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCChHHH
Confidence 99999 55778 79999985 15799999999999997 5 78999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 012474 452 SLERLVDHILS 462 (463)
Q Consensus 452 ~~~~~~~~~~~ 462 (463)
+++++++.+..
T Consensus 468 ~l~~lv~~~~~ 478 (481)
T PLN02554 468 ALKKFIQDVTK 478 (481)
T ss_pred HHHHHHHHHHh
Confidence 99999999864
No 15
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=1.3e-60 Score=460.57 Aligned_cols=431 Identities=25% Similarity=0.436 Sum_probs=326.7
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCCCCCCC------CC---CCCceEEeCCCCCCCcc-ccccc
Q 012474 13 KGRRVILFPLPLQGHINPMLQLASILYSK-GFSITIIHTNFNSPNP------SN---YPHFSFNSISESLWESE-VSTEN 81 (463)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~~~~~~~------~~---~~g~~~~~~~~~~~~~~-~~~~~ 81 (463)
.+.||+++|+|++||++|++.||+.|+.+ |..|||+++..+.... .. ..+++++.+|....++. ....+
T Consensus 2 ~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~l~~~~~~ 81 (470)
T PLN03015 2 DQPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVDNLVEPDAT 81 (470)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCccccCCCCCcc
Confidence 35699999999999999999999999987 9999999876543211 11 12588998984322221 10113
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHhCCCCCCCceEEEeCCchhhHHHHHHHcCCC-eEEEeCchhHHHHHHHHHHHHHHh
Q 012474 82 AISLLTVLNDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLP-RIVLRTSSISSFLAFSAFQILLEK 160 (463)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~pD~VI~D~~~~~~~~~A~~~giP-~v~~~~~~~~~~~~~~~~~~~~~~ 160 (463)
....+....+.+.+.+.+.++++. .++++||+|.+..|+..+|+++||| .+.+.++++..+..+.+.+.....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~l~~l~------~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~~ 155 (470)
T PLN03015 82 IFTKMVVKMRAMKPAVRDAVKSMK------RKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDTV 155 (470)
T ss_pred HHHHHHHHHHhchHHHHHHHHhcC------CCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhcc
Confidence 333333334456666666666543 3589999999999999999999999 577778877766565554432211
Q ss_pred cccccc-ccCCCCCCCccccCCCCCCCcCCCCccccCCCchHHHHHHHHHhhccCCceEEEcchhhhhHHHHHHhhhcC-
Q 012474 161 GYLAEQ-VSFSSDSQLEKPVTELPPLRVKDIPIIVTHDTRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELTRLHKDF- 238 (463)
Q Consensus 161 ~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~- 238 (463)
.+.. ... .. ...+++++.++..+++.............+.+......+++.+++|||.+||+..++.+++.+
T Consensus 156 --~~~~~~~~--~~--~~~vPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~~ 229 (470)
T PLN03015 156 --VEGEYVDI--KE--PLKIPGCKPVGPKELMETMLDRSDQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALREDME 229 (470)
T ss_pred --cccccCCC--CC--eeeCCCCCCCChHHCCHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhhcc
Confidence 1110 000 11 123677777888888853322222223333344445788999999999999999998887742
Q ss_pred -----CCCccccccccccccccCCCcccccchhccccccCCCCeEEEEecCCcccCCHHHHHHHHHHHhcCCCceEEEEc
Q 012474 239 -----PIPMFPIGPFHKYCLASSSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVR 313 (463)
Q Consensus 239 -----~~~v~~vGpl~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~v~~~~ 313 (463)
.++++.|||+...... ...+.++.+|||+++.+++|||||||....+.+.+.+++.+|+..+++|||++.
T Consensus 230 ~~~~~~~~v~~VGPl~~~~~~-----~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r 304 (470)
T PLN03015 230 LNRVMKVPVYPIGPIVRTNVH-----VEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLR 304 (470)
T ss_pred cccccCCceEEecCCCCCccc-----ccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEe
Confidence 2569999999843211 112346999999988899999999999999999999999999999999999996
Q ss_pred CCCC-------CCCccCCCCchhHHHHhcCCCcee-eccChhhhhcCCCCcccccccChhhHHHHHhhCCceeccccccc
Q 012474 314 PGLV-------PGVEWLEPLPKGFLEMLDGRGHIV-KWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGD 385 (463)
Q Consensus 314 ~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~-~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~D 385 (463)
.... ...+..+.+|+++.++..+++.++ +|+||.+||+|+++++||||||+||+.||+++|||||++|+++|
T Consensus 305 ~~~~~~~~~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~~D 384 (470)
T PLN03015 305 RPASYLGASSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAE 384 (470)
T ss_pred cCccccccccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecccccc
Confidence 3210 000112248999999999988765 99999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHhhceeecC----C-ccCHHHHHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHH
Q 012474 386 QLVNARYVSHVWRVGLHLE----R-KFERREIETAIRRVTVE--AEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVD 458 (463)
Q Consensus 386 Q~~na~rv~~~~G~G~~l~----~-~~t~~~l~~~i~~~l~~--~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~ 458 (463)
|+.||+++++.+|+|+.+. . .++.++|.++|+++|.+ ++++.+|+||++|++++++|+.+||||.+.++++++
T Consensus 385 Q~~na~~~~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~nl~~~~~ 464 (470)
T PLN03015 385 QWMNATLLTEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNSLFEWAK 464 (470)
T ss_pred hHHHHHHHHHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 9999999954489999995 2 58999999999999963 457899999999999999999999999999999998
Q ss_pred HH
Q 012474 459 HI 460 (463)
Q Consensus 459 ~~ 460 (463)
.+
T Consensus 465 ~~ 466 (470)
T PLN03015 465 RC 466 (470)
T ss_pred hc
Confidence 76
No 16
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=1.6e-60 Score=470.27 Aligned_cols=437 Identities=29% Similarity=0.468 Sum_probs=320.6
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC--------CC----CceEEeCC---CCCCCcc
Q 012474 12 KKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSN--------YP----HFSFNSIS---ESLWESE 76 (463)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~--------~~----g~~~~~~~---~~~~~~~ 76 (463)
.++.||+++|+|+.||++|++.||+.|+.|||+|||++++.+...... .+ .+...++| .+++++.
T Consensus 3 ~~~~hVvlvp~pa~GHi~P~L~LAk~L~~rG~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~ 82 (482)
T PLN03007 3 HEKLHILFFPFMAHGHMIPTLDMAKLFSSRGAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGC 82 (482)
T ss_pred CCCcEEEEECCCccccHHHHHHHHHHHHhCCCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCc
Confidence 346799999999999999999999999999999999999866422111 01 34445565 3555543
Q ss_pred cccc--------cHHHHHHHHHHhcCchHHHHHHHHHhCCCCCCCceEEEeCCchhhHHHHHHHcCCCeEEEeCchhHHH
Q 012474 77 VSTE--------NAISLLTVLNDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSISSF 148 (463)
Q Consensus 77 ~~~~--------~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~pD~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~ 148 (463)
+... +...++..+. .....+.+.++++.+. .+||+||+|.+..|+..+|+++|||++.+++++++.+
T Consensus 83 e~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~l~~----~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~ 157 (482)
T PLN03007 83 ENVDFITSNNNDDSGDLFLKFL-FSTKYFKDQLEKLLET----TRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSL 157 (482)
T ss_pred ccccccccccccchHHHHHHHH-HHHHHHHHHHHHHHhc----CCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHH
Confidence 2221 1222333332 2334566666666653 5799999999999999999999999999999988776
Q ss_pred HHHHHHHHHHHhccccccccCCCCCCCccccCCCC---CCCcCCCCccccCCCchHHHHHHHHHhhccCCceEEEcchhh
Q 012474 149 LAFSAFQILLEKGYLAEQVSFSSDSQLEKPVTELP---PLRVKDIPIIVTHDTRNFHQLISAVVSKTKACSGLIWNSFED 225 (463)
Q Consensus 149 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~ 225 (463)
..........+....+. ... ...+++++ .+...+++.. .....+...+....+...+++.+++||+.+
T Consensus 158 ~~~~~~~~~~~~~~~~~------~~~-~~~~pg~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~ 228 (482)
T PLN03007 158 CASYCIRVHKPQKKVAS------SSE-PFVIPDLPGDIVITEEQINDA--DEESPMGKFMKEVRESEVKSFGVLVNSFYE 228 (482)
T ss_pred HHHHHHHhcccccccCC------CCc-eeeCCCCCCccccCHHhcCCC--CCchhHHHHHHHHHhhcccCCEEEEECHHH
Confidence 65543321110001110 000 01134432 2233333321 222334555556666778889999999999
Q ss_pred hhHHHHHHhhhcCCCCcccccccccccccc-----CCCcc-cccchhccccccCCCCeEEEEecCCcccCCHHHHHHHHH
Q 012474 226 LEQTELTRLHKDFPIPMFPIGPFHKYCLAS-----SSSLL-SQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAW 299 (463)
Q Consensus 226 le~~~~~~~~~~~~~~v~~vGpl~~~~~~~-----~~~~~-~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~ 299 (463)
+|++..+.+++..+.++++|||+....+.. ..+.. ..+.++.+||+.++++++|||||||....+.+.+.+++.
T Consensus 229 le~~~~~~~~~~~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~ 308 (482)
T PLN03007 229 LESAYADFYKSFVAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAA 308 (482)
T ss_pred HHHHHHHHHHhccCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHH
Confidence 999888877776666799999986432110 00111 123558999999888999999999998888889999999
Q ss_pred HHhcCCCceEEEEcCCCCCCCccCCCCchhHHHHhcC-CCceeeccChhhhhcCCCCcccccccChhhHHHHHhhCCcee
Q 012474 300 GLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDG-RGHIVKWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMI 378 (463)
Q Consensus 300 al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~GvP~l 378 (463)
+|+..+++|||+++...... +....+|+++.++..+ |+++.+|+||.+||+|+++++||||||+||+.||+++|||||
T Consensus 309 ~l~~~~~~flw~~~~~~~~~-~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v 387 (482)
T PLN03007 309 GLEGSGQNFIWVVRKNENQG-EKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMV 387 (482)
T ss_pred HHHHCCCCEEEEEecCCccc-chhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCee
Confidence 99999999999998542110 1123488999888654 445569999999999999999999999999999999999999
Q ss_pred ccccccchhhhHHHHHHHhhceeec--------CC-ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhCCCh
Q 012474 379 CQPCFGDQLVNARYVSHVWRVGLHL--------ER-KFERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSS 449 (463)
Q Consensus 379 ~~P~~~DQ~~na~rv~~~~G~G~~l--------~~-~~t~~~l~~~i~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~g~~ 449 (463)
++|+++||+.||+++++.+++|+.+ +. .++.++|.++|+++|.+++++.||++|+++++.+++|+.+||||
T Consensus 388 ~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a~~~gGsS 467 (482)
T PLN03007 388 TWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAKAAVEEGGSS 467 (482)
T ss_pred eccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhCCCcH
Confidence 9999999999999887434555443 33 58999999999999998667799999999999999999999999
Q ss_pred HHHHHHHHHHHhcC
Q 012474 450 YQSLERLVDHILSF 463 (463)
Q Consensus 450 ~~~~~~~~~~~~~~ 463 (463)
.++++++++.+.++
T Consensus 468 ~~~l~~~v~~~~~~ 481 (482)
T PLN03007 468 FNDLNKFMEELNSR 481 (482)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998763
No 17
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=1.5e-60 Score=461.81 Aligned_cols=419 Identities=21% Similarity=0.348 Sum_probs=309.8
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCC----CCceEEeC--C--CCCCCcccccccHH
Q 012474 12 KKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSNY----PHFSFNSI--S--ESLWESEVSTENAI 83 (463)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~----~g~~~~~~--~--~~~~~~~~~~~~~~ 83 (463)
+.+.||+++|+++.||++|++.||+.|+.+||+|||++++.+....... .++++..+ + ++++++.....+..
T Consensus 2 ~~~~hvv~~P~paqGHi~P~l~LAk~La~~G~~VT~vtt~~~~~~i~~~~a~~~~i~~~~l~~p~~dgLp~g~~~~~~l~ 81 (442)
T PLN02208 2 EPKFHAFMFPWFAFGHMIPFLHLANKLAEKGHRVTFLLPKKAQKQLEHHNLFPDSIVFHPLTIPPVNGLPAGAETTSDIP 81 (442)
T ss_pred CCCCEEEEecCccccHHHHHHHHHHHHHhCCCEEEEEeccchhhhhhcccCCCCceEEEEeCCCCccCCCCCcccccchh
Confidence 4578999999999999999999999999999999999987554332211 24555544 3 45565543322232
Q ss_pred HHHHHHHHhcCchHHHHHHHHHhCCCCCCCceEEEeCCchhhHHHHHHHcCCCeEEEeCchhHHHHHHHHHHHHHHhccc
Q 012474 84 SLLTVLNDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYL 163 (463)
Q Consensus 84 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~pD~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (463)
..+..+.......+.+.++++.+. .++|+||+| +..|+..+|+++|||++.++++++..+. +.+.+. ...
T Consensus 82 ~~l~~~~~~~~~~~~~~l~~~L~~----~~~~cVV~D-~~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~----~~~ 151 (442)
T PLN02208 82 ISMDNLLSEALDLTRDQVEAAVRA----LRPDLIFFD-FAQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG----GKL 151 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh----CCCeEEEEC-CcHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc----ccc
Confidence 222222222223444555555543 568999999 5788999999999999999999887543 222110 000
Q ss_pred cccccCCCCCCCccccCCCCC----CCcCCCCccccCCCchHHH-HHHHHHhhccCCceEEEcchhhhhHHHHHHhhhcC
Q 012474 164 AEQVSFSSDSQLEKPVTELPP----LRVKDIPIIVTHDTRNFHQ-LISAVVSKTKACSGLIWNSFEDLEQTELTRLHKDF 238 (463)
Q Consensus 164 p~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~ 238 (463)
. ..+++++. ++..+++... ....... ......+...+++.+++|||.+||+..++.++..+
T Consensus 152 ~------------~~~pglp~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~~~ 217 (442)
T PLN02208 152 G------------VPPPGYPSSKVLFRENDAHALA--TLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISRQY 217 (442)
T ss_pred C------------CCCCCCCCcccccCHHHcCccc--ccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHhhc
Confidence 0 00233321 2333444221 1112222 33333345667899999999999999998888766
Q ss_pred CCCccccccccccccccCCCcccccchhccccccCCCCeEEEEecCCcccCCHHHHHHHHHHHhcCCCceEEEEcCCCCC
Q 012474 239 PIPMFPIGPFHKYCLASSSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLVP 318 (463)
Q Consensus 239 ~~~v~~vGpl~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~ 318 (463)
.+++++|||++..... ... .+.++.+|||.++++++|||||||...++.+.+.+++.+++..+.+++|++......
T Consensus 218 ~~~v~~vGpl~~~~~~--~~~--~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~~~ 293 (442)
T PLN02208 218 HKKVLLTGPMFPEPDT--SKP--LEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPRGS 293 (442)
T ss_pred CCCEEEEeecccCcCC--CCC--CHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCCcc
Confidence 6789999999865321 012 235599999998888999999999998899989998888877888888888753111
Q ss_pred CCccCCCCchhHHHHhcCCCcee-eccChhhhhcCCCCcccccccChhhHHHHHhhCCceeccccccchhhhHHHHHHHh
Q 012474 319 GVEWLEPLPKGFLEMLDGRGHIV-KWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVW 397 (463)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~-~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~ 397 (463)
. .....+|++|.++..++..++ +|+||.+||+|+++++||||||+||++||+++|||||++|+++||+.||+++++.+
T Consensus 294 ~-~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~ 372 (442)
T PLN02208 294 S-TVQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEF 372 (442)
T ss_pred c-chhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHh
Confidence 1 112348999999987666666 99999999999999999999999999999999999999999999999999866546
Q ss_pred hceeecCC-c---cCHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhcC
Q 012474 398 RVGLHLER-K---FERREIETAIRRVTVEA--EGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILSF 463 (463)
Q Consensus 398 G~G~~l~~-~---~t~~~l~~~i~~~l~~~--~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 463 (463)
|+|+.++. . ++.++|.++|+++|+++ .++.+|++++++++.+. ++||+.+.++++++.+.++
T Consensus 373 g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~----~~gsS~~~l~~~v~~l~~~ 440 (442)
T PLN02208 373 EVSVEVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILV----SPGLLTGYVDKFVEELQEY 440 (442)
T ss_pred ceeEEeccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHh----cCCcHHHHHHHHHHHHHHh
Confidence 99999975 3 89999999999999874 37889999999999985 6889999999999998753
No 18
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=2.5e-60 Score=463.36 Aligned_cols=439 Identities=26% Similarity=0.456 Sum_probs=319.5
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC--------CCCceEEeCC-----CCCCCccccc
Q 012474 13 KGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSN--------YPHFSFNSIS-----ESLWESEVST 79 (463)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~--------~~g~~~~~~~-----~~~~~~~~~~ 79 (463)
++.||+++|++++||++|++.||+.|+.+|+.|||++++.+...... ...++++.+| ++++++.+..
T Consensus 7 ~~~Hvv~vPfpaqGHi~P~l~LAk~La~~G~~vT~v~t~~n~~~~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~~~ 86 (491)
T PLN02534 7 KQLHFVLIPLMAQGHMIPMIDMARLLAERGVIVSLVTTPQNASRFAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCENL 86 (491)
T ss_pred CCCEEEEECCCCcchHHHHHHHHHHHHhCCCeEEEEECCCcHHHHhhhhhhccccCCCeEEEEcCCCCccCCCCCCcccc
Confidence 45799999999999999999999999999999999999876432111 0138899888 4676654332
Q ss_pred ccHH--HHHHHHHHhcCchHHHHHHHHHhCCCCCCCceEEEeCCchhhHHHHHHHcCCCeEEEeCchhHHHHHHHHHHHH
Q 012474 80 ENAI--SLLTVLNDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQIL 157 (463)
Q Consensus 80 ~~~~--~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~pD~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~ 157 (463)
.++. .++..+.... ..+.+.++++++..+ .++++||+|.+..|+..+|+++|||++.+++++++.++.+.....
T Consensus 87 ~~~~~~~~~~~~~~~~-~~l~~~l~~lL~~~~--~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~- 162 (491)
T PLN02534 87 DTLPSRDLLRKFYDAV-DKLQQPLERFLEQAK--PPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRL- 162 (491)
T ss_pred ccCCcHHHHHHHHHHH-HHhHHHHHHHHHhcC--CCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHH-
Confidence 2211 2222222221 223344444443211 468999999999999999999999999999998887765443211
Q ss_pred HHhccccccccCCCCCCCccccCCCC---CCCcCCCCccccCCCchHHHHHHHHHhhccCCceEEEcchhhhhHHHHHHh
Q 012474 158 LEKGYLAEQVSFSSDSQLEKPVTELP---PLRVKDIPIIVTHDTRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELTRL 234 (463)
Q Consensus 158 ~~~~~~p~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~ 234 (463)
..+ ..+.. .......+++++ .++..+++...... .....+...+......++.+++|||.+||+..++.+
T Consensus 163 ~~~-~~~~~-----~~~~~~~iPg~p~~~~l~~~dlp~~~~~~-~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l 235 (491)
T PLN02534 163 HNA-HLSVS-----SDSEPFVVPGMPQSIEITRAQLPGAFVSL-PDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAY 235 (491)
T ss_pred hcc-cccCC-----CCCceeecCCCCccccccHHHCChhhcCc-ccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHH
Confidence 111 11111 011112345544 25555665322111 111222222332334567899999999999999988
Q ss_pred hhcCCCCccccccccccccccC-----CCccc-ccchhccccccCCCCeEEEEecCCcccCCHHHHHHHHHHHhcCCCce
Q 012474 235 HKDFPIPMFPIGPFHKYCLASS-----SSLLS-QDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPF 308 (463)
Q Consensus 235 ~~~~~~~v~~vGpl~~~~~~~~-----~~~~~-~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~ 308 (463)
+..++++++.|||+........ ..... .+.++.+||+.++.+++|||||||......+.+.+++.+|+..+++|
T Consensus 236 ~~~~~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~f 315 (491)
T PLN02534 236 EKAIKKKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKKPF 315 (491)
T ss_pred HhhcCCcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCE
Confidence 8776678999999975321000 00001 22458999999888899999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCccCCCCchhHHHHhcC-CCceeeccChhhhhcCCCCcccccccChhhHHHHHhhCCceeccccccchh
Q 012474 309 LWVVRPGLVPGVEWLEPLPKGFLEMLDG-RGHIVKWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQL 387 (463)
Q Consensus 309 v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~ 387 (463)
||++.............+|+++.++..+ ++++.+|+||.+||+|+++++||||||+||++||+++|||||++|+++||+
T Consensus 316 lW~~r~~~~~~~~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~dq~ 395 (491)
T PLN02534 316 IWVIKTGEKHSELEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQF 395 (491)
T ss_pred EEEEecCccccchhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEeccccccHH
Confidence 9999843110000001267888877554 445569999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhceeecC-------------C-ccCHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHHHHhhCCChHH
Q 012474 388 VNARYVSHVWRVGLHLE-------------R-KFERREIETAIRRVTV--EAEGQEMRERIMHLKEKLELSLLEAGSSYQ 451 (463)
Q Consensus 388 ~na~rv~~~~G~G~~l~-------------~-~~t~~~l~~~i~~~l~--~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~ 451 (463)
.||+++++.||+|+++. . ..+.++|.++|+++|. +++++.+|+||++|++.+++|+.+||||.+
T Consensus 396 ~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~~GGSS~~ 475 (491)
T PLN02534 396 LNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAMELGGSSHI 475 (491)
T ss_pred HHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcCCCcHHH
Confidence 99999986689999873 1 2789999999999997 345789999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 012474 452 SLERLVDHILS 462 (463)
Q Consensus 452 ~~~~~~~~~~~ 462 (463)
.+++|++.|.+
T Consensus 476 nl~~fv~~i~~ 486 (491)
T PLN02534 476 NLSILIQDVLK 486 (491)
T ss_pred HHHHHHHHHHH
Confidence 99999999875
No 19
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=4.6e-60 Score=455.51 Aligned_cols=418 Identities=22% Similarity=0.343 Sum_probs=314.2
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC---CC---CceEEeCC--CCCCCcccccccHH-
Q 012474 13 KGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSN---YP---HFSFNSIS--ESLWESEVSTENAI- 83 (463)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~---~~---g~~~~~~~--~~~~~~~~~~~~~~- 83 (463)
.++||+++|++++||++|++.||+.|+.+|+.|||++++.+...... .+ .+.+.++| ++++++.+...+..
T Consensus 4 ~~~Hvvl~P~paqGHi~P~l~LAk~La~~g~~vT~~tt~~~~~~~~~~~~~~~~~~v~~~~~p~~~glp~g~e~~~~~~~ 83 (453)
T PLN02764 4 LKFHVLMYPWFATGHMTPFLFLANKLAEKGHTVTFLLPKKALKQLEHLNLFPHNIVFRSVTVPHVDGLPVGTETVSEIPV 83 (453)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhCCCEEEEEeCcchhhhhcccccCCCCceEEEEECCCcCCCCCcccccccCCh
Confidence 46899999999999999999999999999999999999866432221 11 26777777 56666543322211
Q ss_pred HHHHHHHHhcCchHHHHHHHHHhCCCCCCCceEEEeCCchhhHHHHHHHcCCCeEEEeCchhHHHHHHHHHHHHHHhccc
Q 012474 84 SLLTVLNDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYL 163 (463)
Q Consensus 84 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~pD~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (463)
.....+.... ..+.+.++++++. .+||+||+|. ..|+..+|+++|||++.++++++..++.+.. + ....
T Consensus 84 ~~~~~~~~a~-~~~~~~~~~~l~~----~~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~----~~~~ 152 (453)
T PLN02764 84 TSADLLMSAM-DLTRDQVEVVVRA----VEPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-P----GGEL 152 (453)
T ss_pred hHHHHHHHHH-HHhHHHHHHHHHh----CCCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-c----cccC
Confidence 1111221111 1233444444432 3589999995 8899999999999999999999987776542 0 0010
Q ss_pred cccccCCCCCCCccccCCCC----CCCcCCCCccc---c-CCCchHHHHHHHHHhhccCCceEEEcchhhhhHHHHHHhh
Q 012474 164 AEQVSFSSDSQLEKPVTELP----PLRVKDIPIIV---T-HDTRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELTRLH 235 (463)
Q Consensus 164 p~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~ 235 (463)
+ ..+++++ .++..+++... . .........+........+++.+++|||.+||+..++.++
T Consensus 153 ~------------~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~ 220 (453)
T PLN02764 153 G------------VPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIE 220 (453)
T ss_pred C------------CCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHH
Confidence 0 0012222 12333333211 0 0111233444444455677889999999999999998887
Q ss_pred hcCCCCccccccccccccccCCCcccccchhccccccCCCCeEEEEecCCcccCCHHHHHHHHHHHhcCCCceEEEEcCC
Q 012474 236 KDFPIPMFPIGPFHKYCLASSSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPG 315 (463)
Q Consensus 236 ~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~v~~~~~~ 315 (463)
...+++++.|||+...... ....+.++.+|||.++++++|||||||....+.+.+.++..+|+..+.+++|++...
T Consensus 221 ~~~~~~v~~VGPL~~~~~~----~~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~ 296 (453)
T PLN02764 221 KHCRKKVLLTGPVFPEPDK----TRELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKPP 296 (453)
T ss_pred hhcCCcEEEeccCccCccc----cccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 7444679999999754311 011235689999999999999999999999999999999999999999999999853
Q ss_pred CCCCCccCCCCchhHHHHhcCCCcee-eccChhhhhcCCCCcccccccChhhHHHHHhhCCceeccccccchhhhHHHHH
Q 012474 316 LVPGVEWLEPLPKGFLEMLDGRGHIV-KWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVS 394 (463)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~ 394 (463)
.... +....+|++|.++..+++.++ +|+||.+||+|+++++||||||+||+.||+++|||||++|++.||+.||++++
T Consensus 297 ~~~~-~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~ 375 (453)
T PLN02764 297 RGSS-TIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLS 375 (453)
T ss_pred CCCc-chhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHHHHH
Confidence 2111 112358999999998888877 99999999999999999999999999999999999999999999999999996
Q ss_pred HHhhceeecCC----ccCHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012474 395 HVWRVGLHLER----KFERREIETAIRRVTVEA--EGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILS 462 (463)
Q Consensus 395 ~~~G~G~~l~~----~~t~~~l~~~i~~~l~~~--~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 462 (463)
+.+|+|+.+.. .++.++|.++|+++|+++ +++.+|+++++++++++ ++||+.+.++++++.+.+
T Consensus 376 ~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~----~~GSS~~~l~~lv~~~~~ 445 (453)
T PLN02764 376 DELKVSVEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLA----SPGLLTGYVDNFIESLQD 445 (453)
T ss_pred HHhceEEEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHH
Confidence 43799998753 489999999999999873 47789999999999997 899999999999999875
No 20
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2e-59 Score=461.15 Aligned_cols=441 Identities=26% Similarity=0.416 Sum_probs=324.8
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCC---eEEEEeCCCCCC---------CCCCCCCceEEeCCCCC-CCcccc
Q 012474 12 KKGRRVILFPLPLQGHINPMLQLASILYSKGF---SITIIHTNFNSP---------NPSNYPHFSFNSISESL-WESEVS 78 (463)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh---~Vt~~~~~~~~~---------~~~~~~g~~~~~~~~~~-~~~~~~ 78 (463)
+++-||+++|++++||++|++.||+.|+.+|. .||++++..+.. .....++++|+.+|+.. +++...
T Consensus 1 ~~~~hVv~~PfpaqGHi~P~l~LAk~La~~G~~~t~vt~~~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~p~~~~~ 80 (475)
T PLN02167 1 KKEAELIFVPFPSTGHILVTIEFAKRLINLDRRIHTITILYWSLPFAPQADAFLKSLIASEPRIRLVTLPEVQDPPPMEL 80 (475)
T ss_pred CCccEEEEeCChhhhhHHHHHHHHHHHHhCCCCeEEEEEEECCCCcchhhhHHHhhcccCCCCeEEEECCCCCCCccccc
Confidence 35669999999999999999999999999984 567766543211 01112369999998643 211110
Q ss_pred -cccHHHHHHHHHHhcCchHHHHHHHHHhCCCCC-C-CceEEEeCCchhhHHHHHHHcCCCeEEEeCchhHHHHHHHHHH
Q 012474 79 -TENAISLLTVLNDKCVVPFQDCLAKLISNGDQE-E-PVTCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQ 155 (463)
Q Consensus 79 -~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~-~-~pD~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~ 155 (463)
..+....+..+...+...+.+.++++......+ . ++++||+|.+..|+..+|+++|||++.++++++..++.+.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~~~~ 160 (475)
T PLN02167 81 FVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMKYLP 160 (475)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHHHHH
Confidence 112222333444556666777777665321000 1 3599999999999999999999999999999998887776544
Q ss_pred HHHHhccccccccCCC-CCCCccccCCC-CCCCcCCCCccccCCCchHHHHHHHHHhhccCCceEEEcchhhhhHHHHHH
Q 012474 156 ILLEKGYLAEQVSFSS-DSQLEKPVTEL-PPLRVKDIPIIVTHDTRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELTR 233 (463)
Q Consensus 156 ~~~~~~~~p~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~ 233 (463)
..... .+. .+.. .......++++ ..++..+++...... .....+....+...+++.+++|||.+||+..+++
T Consensus 161 ~~~~~--~~~--~~~~~~~~~~~~iPgl~~~l~~~dlp~~~~~~--~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~ 234 (475)
T PLN02167 161 ERHRK--TAS--EFDLSSGEEELPIPGFVNSVPTKVLPPGLFMK--ESYEAWVEIAERFPEAKGILVNSFTELEPNAFDY 234 (475)
T ss_pred Hhccc--ccc--ccccCCCCCeeECCCCCCCCChhhCchhhhCc--chHHHHHHHHHhhcccCEeeeccHHHHHHHHHHH
Confidence 32111 110 0000 00011235666 346666666422111 1123333444556778899999999999999988
Q ss_pred hhhcC--CCCccccccccccccccCCCcc--cccchhccccccCCCCeEEEEecCCcccCCHHHHHHHHHHHhcCCCceE
Q 012474 234 LHKDF--PIPMFPIGPFHKYCLASSSSLL--SQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFL 309 (463)
Q Consensus 234 ~~~~~--~~~v~~vGpl~~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~v 309 (463)
+++.. .+++++|||++..... ..... ..+.++.+||+.++.+++|||||||....+.+.+.+++.+|+..++++|
T Consensus 235 l~~~~~~~p~v~~vGpl~~~~~~-~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~fl 313 (475)
T PLN02167 235 FSRLPENYPPVYPVGPILSLKDR-TSPNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVGCRFL 313 (475)
T ss_pred HHhhcccCCeeEEeccccccccc-cCCCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCcEE
Confidence 86531 1469999999864321 00111 1235699999998888999999999988899999999999999999999
Q ss_pred EEEcCCCCCCCccCCCCchhHHHHhcCCCceeeccChhhhhcCCCCcccccccChhhHHHHHhhCCceeccccccchhhh
Q 012474 310 WVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIVKWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVN 389 (463)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~~n 389 (463)
|+++.......+....+|+++.++..+++++++|+||.+||+|+++++||||||+||+.||+++|||||++|+++||+.|
T Consensus 314 w~~~~~~~~~~~~~~~lp~~~~er~~~rg~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~n 393 (475)
T PLN02167 314 WSIRTNPAEYASPYEPLPEGFMDRVMGRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMYAEQQLN 393 (475)
T ss_pred EEEecCcccccchhhhCChHHHHHhccCeeeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEeccccccchhh
Confidence 99975321100112348999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH-HHHHhhceeecCC--------ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 012474 390 ARY-VSHVWRVGLHLER--------KFERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHI 460 (463)
Q Consensus 390 a~r-v~~~~G~G~~l~~--------~~t~~~l~~~i~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 460 (463)
|++ +++ +|+|+.+.. .++.++|.++|+++|.++ +.||++|+++++.+++|+.+|||+.+.++++++.|
T Consensus 394 a~~~~~~-~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~--~~~r~~a~~~~~~~~~av~~gGsS~~~l~~~v~~i 470 (475)
T PLN02167 394 AFTMVKE-LGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGE--DVPRKKVKEIAEAARKAVMDGGSSFVAVKRFIDDL 470 (475)
T ss_pred HHHHHHH-hCeeEEeecccccccCCcccHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 976 667 799998852 369999999999999863 48999999999999999999999999999999998
Q ss_pred hc
Q 012474 461 LS 462 (463)
Q Consensus 461 ~~ 462 (463)
..
T Consensus 471 ~~ 472 (475)
T PLN02167 471 LG 472 (475)
T ss_pred Hh
Confidence 63
No 21
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=3.7e-59 Score=452.58 Aligned_cols=417 Identities=20% Similarity=0.307 Sum_probs=308.4
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC----CCCceEEeC--C--CCCCCcccccccHHH
Q 012474 13 KGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSN----YPHFSFNSI--S--ESLWESEVSTENAIS 84 (463)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~----~~g~~~~~~--~--~~~~~~~~~~~~~~~ 84 (463)
.+.||+++|+|++||++|++.||+.|+.+|++|||++++.+...... ..++.++.+ | ++++++.+...++..
T Consensus 3 ~~~HVvlvPfpaqGHi~PmL~LAk~Las~G~~VT~vtt~~~~~~i~~~~~~~~~i~~~~i~lP~~dGLP~g~e~~~~l~~ 82 (446)
T PLN00414 3 SKFHAFMYPWFGFGHMIPYLHLANKLAEKGHRVTFFLPKKAHKQLQPLNLFPDSIVFEPLTLPPVDGLPFGAETASDLPN 82 (446)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhCCCEEEEEeCCchhhhhcccccCCCceEEEEecCCCcCCCCCcccccccchh
Confidence 46799999999999999999999999999999999999865433221 124777544 3 566665433323221
Q ss_pred HHHHHHHhcCchHHHHHHHHHhCCCCCCCceEEEeCCchhhHHHHHHHcCCCeEEEeCchhHHHHHHHHHHHHHHhcccc
Q 012474 85 LLTVLNDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYLA 164 (463)
Q Consensus 85 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~pD~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~p 164 (463)
............+.+.++.+.+. .+||+||+|. ..|+..+|+++|||++.++++++..++.+.+.. ..... +
T Consensus 83 ~~~~~~~~a~~~l~~~l~~~L~~----~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~~~--~~~~~-~ 154 (446)
T PLN00414 83 STKKPIFDAMDLLRDQIEAKVRA----LKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLAPR--AELGF-P 154 (446)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhc----CCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhCcH--hhcCC-C
Confidence 11111122223455555555543 5689999995 789999999999999999999998887765411 00000 0
Q ss_pred ccccCCCCCCCccccCCCCC----CCcCC--CCccccCCCchHHHHHHHHHhhccCCceEEEcchhhhhHHHHHHhhhcC
Q 012474 165 EQVSFSSDSQLEKPVTELPP----LRVKD--IPIIVTHDTRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELTRLHKDF 238 (463)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~ 238 (463)
+++++. +...+ ++... .. ....+.+..+...+++.+++|||.+||+..++.++..+
T Consensus 155 --------------~pg~p~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~ 216 (446)
T PLN00414 155 --------------PPDYPLSKVALRGHDANVCSLF-AN---SHELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQC 216 (446)
T ss_pred --------------CCCCCCCcCcCchhhcccchhh-cc---cHHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHhc
Confidence 011111 11111 11111 00 11233334455667899999999999999999888755
Q ss_pred CCCccccccccccccccCCCcccccchhccccccCCCCeEEEEecCCcccCCHHHHHHHHHHHhcCCCceEEEEcCCCCC
Q 012474 239 PIPMFPIGPFHKYCLASSSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLVP 318 (463)
Q Consensus 239 ~~~v~~vGpl~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~ 318 (463)
+++++.|||+...... ......+.++.+|||.++.+++|||||||....+.+.+.++..+|+..+.+++|++......
T Consensus 217 ~~~v~~VGPl~~~~~~--~~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~~~ 294 (446)
T PLN00414 217 QRKVLLTGPMLPEPQN--KSGKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPKGS 294 (446)
T ss_pred CCCeEEEcccCCCccc--ccCcccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCCCc
Confidence 6679999999753321 01111234588999999999999999999999999999999999999999999999753211
Q ss_pred CCccCCCCchhHHHHhcCCCcee-eccChhhhhcCCCCcccccccChhhHHHHHhhCCceeccccccchhhhHHHHHHHh
Q 012474 319 GVEWLEPLPKGFLEMLDGRGHIV-KWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVW 397 (463)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~-~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~ 397 (463)
+ +....+|++|.++.++++.++ +|+||.+||+|+++++||||||+||+.||+++|||||++|++.||+.||+++++.+
T Consensus 295 ~-~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~ 373 (446)
T PLN00414 295 S-TVQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEEL 373 (446)
T ss_pred c-cchhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHh
Confidence 1 112358999999999999887 99999999999999999999999999999999999999999999999999996437
Q ss_pred hceeecCC----ccCHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012474 398 RVGLHLER----KFERREIETAIRRVTVEA--EGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILS 462 (463)
Q Consensus 398 G~G~~l~~----~~t~~~l~~~i~~~l~~~--~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 462 (463)
|+|+.+.. .++.++|+++++++|.++ .++.+|++++++++.+.+ +||++ ..++++++.+++
T Consensus 374 g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~~---~gg~s-s~l~~~v~~~~~ 440 (446)
T PLN00414 374 EVSVKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLVS---PGLLS-GYADKFVEALEN 440 (446)
T ss_pred CeEEEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHc---CCCcH-HHHHHHHHHHHH
Confidence 99999964 389999999999999863 367899999999999752 44424 448999998865
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=3.8e-54 Score=425.36 Aligned_cols=398 Identities=18% Similarity=0.214 Sum_probs=290.9
Q ss_pred CCcEEEEE-cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCC-CCCCCCCCceEEeCCCCCCCcc---ccc--------
Q 012474 13 KGRRVILF-PLPLQGHINPMLQLASILYSKGFSITIIHTNFNS-PNPSNYPHFSFNSISESLWESE---VST-------- 79 (463)
Q Consensus 13 ~~~~il~~-~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~---~~~-------- 79 (463)
.+.||+++ |.++.||+.-+.+|+++|++|||+||++++.... ....+..+++.+.++...+... ...
T Consensus 19 ~~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 98 (507)
T PHA03392 19 RAARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPTLRVYYASHLCGNITEIDASLSVEYFKKLVKSSAVFRKRGV 98 (507)
T ss_pred CcccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecccccccccCCCCCEEEEEcCCChHHHHHHHhhhhHHHhhhh
Confidence 34557755 8899999999999999999999999999885321 1111235666666542111100 000
Q ss_pred -ccH----HHHHHHHHHhcCchHHH-HHHHHHhCCCCCCCceEEEeCCchhhHHHHHHHc-CCCeEEEeCchhHHHHHHH
Q 012474 80 -ENA----ISLLTVLNDKCVVPFQD-CLAKLISNGDQEEPVTCLITDAIWHFAQTVADTL-RLPRIVLRTSSISSFLAFS 152 (463)
Q Consensus 80 -~~~----~~~~~~~~~~~~~~l~~-~l~~l~~~~~~~~~pD~VI~D~~~~~~~~~A~~~-giP~v~~~~~~~~~~~~~~ 152 (463)
.+. ......+...|+..+.+ .+.++++..+ .++|+||+|.+..|++.+|+.+ ++|.|.++++....... .
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~--~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~~~~-~ 175 (507)
T PHA03392 99 VADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKN--NKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLAENF-E 175 (507)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCC--CceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCchhHH-H
Confidence 000 11122334566666654 4455554111 6799999999999999999999 99988887765543332 2
Q ss_pred HHH-HHHHhcccccc-ccCCCCCCCccccCCCCCCCcCCCC--ccccCCCchHHHHHH----HHHhhccCCceEEEcchh
Q 012474 153 AFQ-ILLEKGYLAEQ-VSFSSDSQLEKPVTELPPLRVKDIP--IIVTHDTRNFHQLIS----AVVSKTKACSGLIWNSFE 224 (463)
Q Consensus 153 ~~~-~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~s~~ 224 (463)
..+ .+.+++|+|.. ++++..|++.+|+.|+.......+. ......+....+.+. ...+...+.+.+|+|+.+
T Consensus 176 ~~gg~p~~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~~~~~l~~~~~l~lvns~~ 255 (507)
T PHA03392 176 TMGAVSRHPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTPTIRELRNRVQLLFVNVHP 255 (507)
T ss_pred hhccCCCCCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCCCHHHHHhCCcEEEEecCc
Confidence 333 66778899988 8999999999999996421110000 000001111122211 134555777899999999
Q ss_pred hhhHHHHHHhhhcCCCCccccccccccccccCCCcccccchhccccccCCCCeEEEEecCCccc---CCHHHHHHHHHHH
Q 012474 225 DLEQTELTRLHKDFPIPMFPIGPFHKYCLASSSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVV---VNVTEFLEIAWGL 301 (463)
Q Consensus 225 ~le~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~---~~~~~~~~~~~al 301 (463)
.+|++ ..+++++++|||++.+... .+++ ++++.+|++.. ++++|||||||... .+.+.++.+++++
T Consensus 256 ~~d~~------rp~~p~v~~vGgi~~~~~~--~~~l--~~~l~~fl~~~-~~g~V~vS~GS~~~~~~~~~~~~~~~l~a~ 324 (507)
T PHA03392 256 VFDNN------RPVPPSVQYLGGLHLHKKP--PQPL--DDYLEEFLNNS-TNGVVYVSFGSSIDTNDMDNEFLQMLLRTF 324 (507)
T ss_pred cccCC------CCCCCCeeeecccccCCCC--CCCC--CHHHHHHHhcC-CCcEEEEECCCCCcCCCCCHHHHHHHHHHH
Confidence 99986 2356779999999875321 1233 34589999975 45899999999863 5788899999999
Q ss_pred hcCCCceEEEEcCCCCCCCccCCCCchhHHHHhcCCCceeeccChhhhhcCCCCcccccccChhhHHHHHhhCCceeccc
Q 012474 302 ANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIVKWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQP 381 (463)
Q Consensus 302 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P 381 (463)
+++++++||+.++...+ ..+ ++|+++++|+||.+||+|+++++||||||+||+.||+++|||+|++|
T Consensus 325 ~~l~~~viw~~~~~~~~-----~~~--------p~Nv~i~~w~Pq~~lL~hp~v~~fItHGG~~s~~Eal~~GvP~v~iP 391 (507)
T PHA03392 325 KKLPYNVLWKYDGEVEA-----INL--------PANVLTQKWFPQRAVLKHKNVKAFVTQGGVQSTDEAIDALVPMVGLP 391 (507)
T ss_pred HhCCCeEEEEECCCcCc-----ccC--------CCceEEecCCCHHHHhcCCCCCEEEecCCcccHHHHHHcCCCEEECC
Confidence 99999999999754310 123 45559999999999999999999999999999999999999999999
Q ss_pred cccchhhhHHHHHHHhhceeecCC-ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Q 012474 382 CFGDQLVNARYVSHVWRVGLHLER-KFERREIETAIRRVTVEAEGQEMRERIMHLKEKLEL 441 (463)
Q Consensus 382 ~~~DQ~~na~rv~~~~G~G~~l~~-~~t~~~l~~~i~~~l~~~~~~~~~~~a~~~~~~~~~ 441 (463)
+++||+.||+|++++ |+|+.++. .+|.++|.++|+++++| ++|+++|+++++.+++
T Consensus 392 ~~~DQ~~Na~rv~~~-G~G~~l~~~~~t~~~l~~ai~~vl~~---~~y~~~a~~ls~~~~~ 448 (507)
T PHA03392 392 MMGDQFYNTNKYVEL-GIGRALDTVTVSAAQLVLAIVDVIEN---PKYRKNLKELRHLIRH 448 (507)
T ss_pred CCccHHHHHHHHHHc-CcEEEeccCCcCHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHh
Confidence 999999999999995 99999998 89999999999999999 8999999999999984
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=2e-56 Score=450.07 Aligned_cols=390 Identities=26% Similarity=0.336 Sum_probs=244.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCC-CCCCCceEEeCCCCCCCcc-----cc--------c--
Q 012474 16 RVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNP-SNYPHFSFNSISESLWESE-----VS--------T-- 79 (463)
Q Consensus 16 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~-----~~--------~-- 79 (463)
||+++|. ++||+.++..|+++|++|||+||++++....... ....++++..++...+... .. .
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~rGH~VTvl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAERGHNVTVLTPSPSSSLNPSKPSNIRFETYPDPYPEEEFEEIFPEFISKFFSESSF 80 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH-TTSEEEHHHHHHT------S-CCEEEE-----TT------TTHHHHHHHHHCC
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhcCCceEEEEeecccccccccccceeeEEEcCCcchHHHhhhhHHHHHHHhhhccc
Confidence 7889986 7799999999999999999999999985321111 1224566666654332211 00 0
Q ss_pred -ccHHHHH-------HHHHHhcCchHHH--HHHHHHhCCCCCCCceEEEeCCchhhHHHHHHHcCCCeEEEeCchhHHHH
Q 012474 80 -ENAISLL-------TVLNDKCVVPFQD--CLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFL 149 (463)
Q Consensus 80 -~~~~~~~-------~~~~~~~~~~l~~--~l~~l~~~~~~~~~pD~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~ 149 (463)
......+ ......|+..+.+ +++.+.. .++|++|+|.++.|+..+|+.+|+|.+.+.++......
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~-----~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~~~~~ 155 (500)
T PF00201_consen 81 ANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKS-----EKFDLVISDAFDPCGLALAHYLGIPVIIISSSTPMYDL 155 (500)
T ss_dssp HHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHH-----HHHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCSCSCC
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh-----hccccceEeeccchhHHHHHHhcCCeEEEecccccchh
Confidence 0111111 1223455444433 3333333 46999999999999999999999999876544322211
Q ss_pred HHHHHHHHHHhcccccc-ccCCCCCCCccccCCCCCCCcCCC-----CccccCCCchHHHHHHHHHhhccCCceEEEcch
Q 012474 150 AFSAFQILLEKGYLAEQ-VSFSSDSQLEKPVTELPPLRVKDI-----PIIVTHDTRNFHQLISAVVSKTKACSGLIWNSF 223 (463)
Q Consensus 150 ~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~ 223 (463)
.....+.+.+++|+|.. ++++..+++.+|+.|+.......+ ..............-....+...+.+.+++|+.
T Consensus 156 ~~~~~g~p~~psyvP~~~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~ns~ 235 (500)
T PF00201_consen 156 SSFSGGVPSPPSYVPSMFSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKYFGFPFSFRELLSNASLVLINSH 235 (500)
T ss_dssp TCCTSCCCTSTTSTTCBCCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEESS-GGGCHHHHHHHHHCCSSTE
T ss_pred hhhccCCCCChHHhccccccCCCccchhhhhhhhhhhhhhccccccchhhHHHHHhhhcccccccHHHHHHHHHHhhhcc
Confidence 11111334678888988 888888999999888641100000 000000000000000011222334566788999
Q ss_pred hhhhHHHHHHhhhcCCCCccccccccccccccCCCcccccchhccccccCCCCeEEEEecCCccc-CCHHHHHHHHHHHh
Q 012474 224 EDLEQTELTRLHKDFPIPMFPIGPFHKYCLASSSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVV-VNVTEFLEIAWGLA 302 (463)
Q Consensus 224 ~~le~~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~-~~~~~~~~~~~al~ 302 (463)
+.+++|.+. .+.+++||+++..++ ++++. ++.+|++..+++++|||||||... .+.+..+.++++++
T Consensus 236 ~~ld~prp~------~p~v~~vGgl~~~~~----~~l~~--~~~~~~~~~~~~~vv~vsfGs~~~~~~~~~~~~~~~~~~ 303 (500)
T PF00201_consen 236 PSLDFPRPL------LPNVVEVGGLHIKPA----KPLPE--ELWNFLDSSGKKGVVYVSFGSIVSSMPEEKLKEIAEAFE 303 (500)
T ss_dssp EE----HHH------HCTSTTGCGC-S--------TCHH--HHHHHTSTTTTTEEEEEE-TSSSTT-HHHHHHHHHHHHH
T ss_pred ccCcCCcch------hhcccccCccccccc----ccccc--ccchhhhccCCCCEEEEecCcccchhHHHHHHHHHHHHh
Confidence 999987542 456999999988755 34444 489999986678999999999876 44555888999999
Q ss_pred cCCCceEEEEcCCCCCCCccCCCCchhHHHHhcCCCceeeccChhhhhcCCCCcccccccChhhHHHHHhhCCceecccc
Q 012474 303 NSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIVKWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPC 382 (463)
Q Consensus 303 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~ 382 (463)
++++++||++.+.. ++ .+++|+++++|+||.+||.|+++++||||||+||+.||+++|||+|++|+
T Consensus 304 ~~~~~~iW~~~~~~----------~~----~l~~n~~~~~W~PQ~~lL~hp~v~~fitHgG~~s~~Ea~~~gvP~l~~P~ 369 (500)
T PF00201_consen 304 NLPQRFIWKYEGEP----------PE----NLPKNVLIVKWLPQNDLLAHPRVKLFITHGGLNSTQEALYHGVPMLGIPL 369 (500)
T ss_dssp CSTTEEEEEETCSH----------GC----HHHTTEEEESS--HHHHHTSTTEEEEEES--HHHHHHHHHCT--EEE-GC
T ss_pred hCCCcccccccccc----------cc----cccceEEEeccccchhhhhcccceeeeeccccchhhhhhhccCCccCCCC
Confidence 99999999997631 11 23456699999999999999999999999999999999999999999999
Q ss_pred ccchhhhHHHHHHHhhceeecCC-ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Q 012474 383 FGDQLVNARYVSHVWRVGLHLER-KFERREIETAIRRVTVEAEGQEMRERIMHLKEKLEL 441 (463)
Q Consensus 383 ~~DQ~~na~rv~~~~G~G~~l~~-~~t~~~l~~~i~~~l~~~~~~~~~~~a~~~~~~~~~ 441 (463)
++||+.||++++++ |+|+.++. .+|.++|.++|+++|+| ++|++||++++..+++
T Consensus 370 ~~DQ~~na~~~~~~-G~g~~l~~~~~~~~~l~~ai~~vl~~---~~y~~~a~~ls~~~~~ 425 (500)
T PF00201_consen 370 FGDQPRNAARVEEK-GVGVVLDKNDLTEEELRAAIREVLEN---PSYKENAKRLSSLFRD 425 (500)
T ss_dssp STTHHHHHHHHHHT-TSEEEEGGGC-SHHHHHHHHHHHHHS---HHHHHHHHHHHHTTT-
T ss_pred cccCCccceEEEEE-eeEEEEEecCCcHHHHHHHHHHHHhh---hHHHHHHHHHHHHHhc
Confidence 99999999999995 99999998 99999999999999999 8999999999999985
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=4.6e-44 Score=349.25 Aligned_cols=374 Identities=18% Similarity=0.253 Sum_probs=259.9
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCcccc----cccHHHHHHHHHHhcCc
Q 012474 20 FPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSNYPHFSFNSISESLWESEVS----TENAISLLTVLNDKCVV 95 (463)
Q Consensus 20 ~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 95 (463)
+.+|+.||++|+++||++|.++||+|+|++++.+...... .|+.+.+++......... ..+....+..+...+..
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~~~~~v~~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVARGHRVTYATTEEFAERVEA-AGAEFVLYGSALPPPDNPPENTEEEPIDIIEKLLDEAED 79 (392)
T ss_pred CCCCccccccccHHHHHHHHhCCCeEEEEeCHHHHHHHHH-cCCEEEecCCcCccccccccccCcchHHHHHHHHHHHHH
Confidence 4679999999999999999999999999999766554444 689999998644331100 02233334444343333
Q ss_pred hHHHHHHHHHhCCCCCCCceEEEeCCchhhHHHHHHHcCCCeEEEeCchhHHHHHHHHHHHHHHhccccccccCCCCCCC
Q 012474 96 PFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYLAEQVSFSSDSQL 175 (463)
Q Consensus 96 ~l~~~l~~l~~~~~~~~~pD~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 175 (463)
.+.++++.+.. .+||+||+|.+++++..+|+.+|||+|.+++.+..... .+ ....|... ..
T Consensus 80 ~~~~l~~~~~~-----~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~----~~----~~~~~~~~----~~-- 140 (392)
T TIGR01426 80 VLPQLEEAYKG-----DRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAANEE----FE----EMVSPAGE----GS-- 140 (392)
T ss_pred HHHHHHHHhcC-----CCCCEEEECCccHHHHHHHHHhCCCEEEEehhhccccc----cc----ccccccch----hh--
Confidence 34333333322 67999999998888999999999999988655321100 00 00001110 00
Q ss_pred ccccCCCCCCCcCCCCccccCCCchHHHHHHHHHh-----------h-ccCCceEEEcchhhhhHHHHHHhhhcCCCCcc
Q 012474 176 EKPVTELPPLRVKDIPIIVTHDTRNFHQLISAVVS-----------K-TKACSGLIWNSFEDLEQTELTRLHKDFPIPMF 243 (463)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-~~~~~~~l~~s~~~le~~~~~~~~~~~~~~v~ 243 (463)
......... . .+...+.+..++. . ....+..+..+.+.|+++ +.+++.+++
T Consensus 141 ~~~~~~~~~----~--------~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~~-----~~~~~~~~~ 203 (392)
T TIGR01426 141 AEEGAIAER----G--------LAEYVARLSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQPA-----GETFDDSFT 203 (392)
T ss_pred hhhhccccc----h--------hHHHHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhCCC-----ccccCCCeE
Confidence 000000000 0 0000011111100 0 122334677777777764 445677799
Q ss_pred ccccccccccccCCCcccccchhccccccCCCCeEEEEecCCcccCCHHHHHHHHHHHhcCCCceEEEEcCCCCCCCccC
Q 012474 244 PIGPFHKYCLASSSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWL 323 (463)
Q Consensus 244 ~vGpl~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~ 323 (463)
++||+...... ...|....+++++||+|+||........++.+++++.+.+.+++|.++....
T Consensus 204 ~~Gp~~~~~~~-----------~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~------ 266 (392)
T TIGR01426 204 FVGPCIGDRKE-----------DGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVD------ 266 (392)
T ss_pred EECCCCCCccc-----------cCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCC------
Confidence 99998754321 1235555567899999999987666678889999999999999988865421
Q ss_pred CCCchhHHHHhcCCCceeeccChhhhhcCCCCcccccccChhhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeec
Q 012474 324 EPLPKGFLEMLDGRGHIVKWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHL 403 (463)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l 403 (463)
.+.+ +..++|+.+.+|+||.++|+++++ +|||||+||+.||+++|+|+|++|...||..||+++++ +|+|..+
T Consensus 267 ---~~~~-~~~~~~v~~~~~~p~~~ll~~~~~--~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~-~g~g~~l 339 (392)
T TIGR01426 267 ---PADL-GELPPNVEVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAE-LGLGRHL 339 (392)
T ss_pred ---hhHh-ccCCCCeEEeCCCCHHHHHhhCCE--EEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHH-CCCEEEe
Confidence 0111 123456689999999999999998 99999999999999999999999999999999999999 5999999
Q ss_pred CC-ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 012474 404 ER-KFERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHIL 461 (463)
Q Consensus 404 ~~-~~t~~~l~~~i~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 461 (463)
.. .+++++|.++|+++|+| ++|+++++++++.++ ..++.+++++.+.+.+.
T Consensus 340 ~~~~~~~~~l~~ai~~~l~~---~~~~~~~~~l~~~~~----~~~~~~~aa~~i~~~~~ 391 (392)
T TIGR01426 340 PPEEVTAEKLREAVLAVLSD---PRYAERLRKMRAEIR----EAGGARRAADEIEGFLA 391 (392)
T ss_pred ccccCCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHH----HcCCHHHHHHHHHHhhc
Confidence 87 89999999999999999 889999999999998 56777888877776553
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=1.3e-44 Score=354.90 Aligned_cols=363 Identities=18% Similarity=0.180 Sum_probs=243.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCcccc-----------cccHH
Q 012474 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSNYPHFSFNSISESLWESEVS-----------TENAI 83 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-----------~~~~~ 83 (463)
|||+|+++|+.||++|+++||++|++|||+|+|++++........ .|++|.++++........ .....
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~rGh~V~~~t~~~~~~~v~~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAAGHEVRVATPPEFADLVEA-AGLEFVPVGGDPDELLASPERNAGLLLLGPGLLL 79 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHCCCeEEEeeCHhHHHHHHH-cCCceeeCCCCHHHHHhhhhhcccccccchHHHH
Confidence 899999999999999999999999999999999999754443333 689999988643321111 01112
Q ss_pred HHHHHHHHhcCchHHHHHHHHHhCCCCCCCceEEEeCCchhhHHHHHHHcCCCeEEEeCchhHHHHHHHHHHHHHHhccc
Q 012474 84 SLLTVLNDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYL 163 (463)
Q Consensus 84 ~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~pD~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (463)
.....+...+...+.+.++.+.. .+||+||+|.+.+++..+|+++|||++.+++++....... .
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~-----~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~-----------~ 143 (401)
T cd03784 80 GALRLLRREAEAMLDDLVAAARD-----WGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAF-----------P 143 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc-----cCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccC-----------C
Confidence 22333444444445555554433 7899999999889999999999999999988765422110 0
Q ss_pred cccccCCCCCCCccccCCCCCCCcCCCCccccCCCchHHHHHHHHHhhc---------cCCceEEEcchhhhhHHHHHHh
Q 012474 164 AEQVSFSSDSQLEKPVTELPPLRVKDIPIIVTHDTRNFHQLISAVVSKT---------KACSGLIWNSFEDLEQTELTRL 234 (463)
Q Consensus 164 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~~s~~~le~~~~~~~ 234 (463)
|.. ++ .+.. ........ .........+......+ ...+..+....+.+.++
T Consensus 144 ~~~-~~----------~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~----- 203 (401)
T cd03784 144 PPL-GR----------ANLR---LYALLEAE-LWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPAVLPP----- 203 (401)
T ss_pred Ccc-ch----------HHHH---HHHHHHHH-HHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCcccCCC-----
Confidence 000 00 0000 00000000 00000111111111111 11223344444444332
Q ss_pred hhcCCCCccccc-cccccccccCCCcccccchhccccccCCCCeEEEEecCCccc-CCHHHHHHHHHHHhcCCCceEEEE
Q 012474 235 HKDFPIPMFPIG-PFHKYCLASSSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVV-VNVTEFLEIAWGLANSRVPFLWVV 312 (463)
Q Consensus 235 ~~~~~~~v~~vG-pl~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~v~~~ 312 (463)
..+++....++| ++...+.. ...+.++..|++. ++++||||+||... ........++++++..+.++||++
T Consensus 204 ~~~~~~~~~~~g~~~~~~~~~-----~~~~~~~~~~~~~--~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~ 276 (401)
T cd03784 204 PPDWPRFDLVTGYGFRDVPYN-----GPPPPELWLFLAA--GRPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILSL 276 (401)
T ss_pred CCCccccCcEeCCCCCCCCCC-----CCCCHHHHHHHhC--CCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEEc
Confidence 233445566775 33332221 1233446778875 67899999999876 345677889999999899999998
Q ss_pred cCCCCCCCccCCCCchhHHHHhcCCCceeeccChhhhhcCCCCcccccccChhhHHHHHhhCCceeccccccchhhhHHH
Q 012474 313 RPGLVPGVEWLEPLPKGFLEMLDGRGHIVKWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARY 392 (463)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~~na~r 392 (463)
+.... . . ...++|+++.+|+||.++|+++++ ||||||+||++||+++|||+|++|+..||+.||++
T Consensus 277 g~~~~------~---~---~~~~~~v~~~~~~p~~~ll~~~d~--~I~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~ 342 (401)
T cd03784 277 GWGGL------G---A---EDLPDNVRVVDFVPHDWLLPRCAA--VVHHGGAGTTAAALRAGVPQLVVPFFGDQPFWAAR 342 (401)
T ss_pred cCccc------c---c---cCCCCceEEeCCCCHHHHhhhhhe--eeecCCchhHHHHHHcCCCEEeeCCCCCcHHHHHH
Confidence 76431 0 0 123456699999999999999999 99999999999999999999999999999999999
Q ss_pred HHHHhhceeecCC-ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Q 012474 393 VSHVWRVGLHLER-KFERREIETAIRRVTVEAEGQEMRERIMHLKEKLE 440 (463)
Q Consensus 393 v~~~~G~G~~l~~-~~t~~~l~~~i~~~l~~~~~~~~~~~a~~~~~~~~ 440 (463)
+++ +|+|+.++. .+++++|.++|++++++ + ++++++++++.++
T Consensus 343 ~~~-~G~g~~l~~~~~~~~~l~~al~~~l~~---~-~~~~~~~~~~~~~ 386 (401)
T cd03784 343 VAE-LGAGPALDPRELTAERLAAALRRLLDP---P-SRRRAAALLRRIR 386 (401)
T ss_pred HHH-CCCCCCCCcccCCHHHHHHHHHHHhCH---H-HHHHHHHHHHHHH
Confidence 999 599999987 78999999999999997 4 5666777777765
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-43 Score=339.03 Aligned_cols=388 Identities=18% Similarity=0.217 Sum_probs=249.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCccc--ccccHHHHHHHHHH
Q 012474 14 GRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSNYPHFSFNSISESLWESEV--STENAISLLTVLND 91 (463)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 91 (463)
+|||+++..|+.||++|+++|+++|.++||+|+|+|++...+...+ .|+.|..++....+... ...+....+.....
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~~~~~ve~-ag~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRRGHEVVFASTGKFKEFVEA-AGLAFVAYPIRDSELATEDGKFAGVKSFRRLLQ 79 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhcCCeEEEEeCHHHHHHHHH-hCcceeeccccCChhhhhhhhhhccchhHHHhh
Confidence 5999999999999999999999999999999999999766555555 56777777754221111 11111121111122
Q ss_pred hcCchHHHHHHHHHhCCCCCCCceEEEeCCchhhHHHHHHHcCCCeEEEeCchhHHHHHHHHHHHHHHhcccccc-ccCC
Q 012474 92 KCVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYLAEQ-VSFS 170 (463)
Q Consensus 92 ~~~~~l~~~l~~l~~~~~~~~~pD~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~ 170 (463)
.......+.++-+.+ ..||+++.|.....+ .+++..++|++.....+.+....... +.. ....
T Consensus 80 ~~~~~~~~~~~~~~e-----~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~ 143 (406)
T COG1819 80 QFKKLIRELLELLRE-----LEPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAGL----------PLPPVGIA 143 (406)
T ss_pred hhhhhhHHHHHHHHh-----cchhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCccccc----------Cccccccc
Confidence 222333344444444 569999999766655 88999999999866664442211110 000 0000
Q ss_pred CCCCCccccCCCCC-----CCcCCC-CccccCCCchHHHH-HHHHHhhccCCceEEEcchhhhhHHHHHHhhhcCCCCcc
Q 012474 171 SDSQLEKPVTELPP-----LRVKDI-PIIVTHDTRNFHQL-ISAVVSKTKACSGLIWNSFEDLEQTELTRLHKDFPIPMF 243 (463)
Q Consensus 171 ~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~v~ 243 (463)
.... .....++. ...... ......+....... ..+....+.......+...+...++ ...++....
T Consensus 144 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~p~~~~ 216 (406)
T COG1819 144 GKLP--IPLYPLPPRLVRPLIFARSWLPKLVVRRNLGLELGLPNIRRLFASGPLLEIAYTDVLFPP-----GDRLPFIGP 216 (406)
T ss_pred cccc--ccccccChhhccccccchhhhhhhhhhhhccccccccchHHHhcCCCCccccccccccCC-----CCCCCCCcC
Confidence 0000 00000000 000000 00000000000000 0001111111111111111111110 011233477
Q ss_pred ccccccccccccCCCcccccchhccccccCCCCeEEEEecCCcccCCHHHHHHHHHHHhcCCCceEEEEcCCCCCCCccC
Q 012474 244 PIGPFHKYCLASSSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWL 323 (463)
Q Consensus 244 ~vGpl~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~ 323 (463)
++||+...... ++..|. ..++++||+|+||.... .++++.++++++.++.++|+.++... . ..
T Consensus 217 ~~~~~~~~~~~----------~~~~~~--~~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~~~-~---~~ 279 (406)
T COG1819 217 YIGPLLGEAAN----------ELPYWI--PADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGGAR-D---TL 279 (406)
T ss_pred ccccccccccc----------cCcchh--cCCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEeccccc-c---cc
Confidence 78887776542 123332 24788999999999876 88999999999999999999886621 1 13
Q ss_pred CCCchhHHHHhcCCCceeeccChhhhhcCCCCcccccccChhhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeec
Q 012474 324 EPLPKGFLEMLDGRGHIVKWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHL 403 (463)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l 403 (463)
..+|+|+ .+.+|+||.++|+++++ ||||||+||++|||++|||+|++|...||++||.|+++ +|+|..+
T Consensus 280 ~~~p~n~--------~v~~~~p~~~~l~~ad~--vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~-~G~G~~l 348 (406)
T COG1819 280 VNVPDNV--------IVADYVPQLELLPRADA--VIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEE-LGAGIAL 348 (406)
T ss_pred ccCCCce--------EEecCCCHHHHhhhcCE--EEecCCcchHHHHHHcCCCEEEecCCcchhHHHHHHHH-cCCceec
Confidence 4466666 99999999999999999 99999999999999999999999999999999999999 6999999
Q ss_pred CC-ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 012474 404 ER-KFERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHI 460 (463)
Q Consensus 404 ~~-~~t~~~l~~~i~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 460 (463)
+. .++++.++++|+++|+| +.|+++++++++.++ +.++..++.+.+.++.
T Consensus 349 ~~~~l~~~~l~~av~~vL~~---~~~~~~~~~~~~~~~----~~~g~~~~a~~le~~~ 399 (406)
T COG1819 349 PFEELTEERLRAAVNEVLAD---DSYRRAAERLAEEFK----EEDGPAKAADLLEEFA 399 (406)
T ss_pred CcccCCHHHHHHHHHHHhcC---HHHHHHHHHHHHHhh----hcccHHHHHHHHHHHH
Confidence 98 89999999999999999 899999999999999 5666665665555544
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=1.1e-41 Score=343.14 Aligned_cols=401 Identities=31% Similarity=0.434 Sum_probs=260.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC-CCC----------ceEEeCCCCCCCccccc-cc
Q 012474 14 GRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSN-YPH----------FSFNSISESLWESEVST-EN 81 (463)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~-~~g----------~~~~~~~~~~~~~~~~~-~~ 81 (463)
..+++++++|+.||++|+..+|+.|+++||+||++++......... ... +.+...++.++...... .+
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAERGHNVTVVTPSFNALKLSKSSKSKSIKKINPPPFEFLTIPDGLPEGWEDDDLD 84 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHcCCceEEEEeechhcccCCcccceeeeeeecChHHhhhhhhhhccchHHHHHH
Confidence 5678889999999999999999999999999999999754432221 111 11111111222222111 11
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHhCCCCCCCceEEEeCCchhhHHHHHHHcC-CCeEEEeCchhHHHHHHHHHHHHHHh
Q 012474 82 AISLLTVLNDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLR-LPRIVLRTSSISSFLAFSAFQILLEK 160 (463)
Q Consensus 82 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~pD~VI~D~~~~~~~~~A~~~g-iP~v~~~~~~~~~~~~~~~~~~~~~~ 160 (463)
.......+...|...+.+.+..+..... .++|++|+|.+..+...++...+ ++...+.+.++.......+ .+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~----~~~ 158 (496)
T KOG1192|consen 85 ISESLLELNKTCEDLLRDPLEKLLLLKS--EKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLP----SPL 158 (496)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHhhc--CCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCc----Ccc
Confidence 1222455667777777775555443321 34999999998666666776664 8888877776665443222 222
Q ss_pred cccccc-ccCC-CCCCCccccCCCCCCCcCCCCccc-c-CCCchHH-HHH-------HHHHhhccCCceEEEcchhhhhH
Q 012474 161 GYLAEQ-VSFS-SDSQLEKPVTELPPLRVKDIPIIV-T-HDTRNFH-QLI-------SAVVSKTKACSGLIWNSFEDLEQ 228 (463)
Q Consensus 161 ~~~p~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~-~~~-------~~~~~~~~~~~~~l~~s~~~le~ 228 (463)
.++|.. ...+ ..+.+..+..++.......+.... . ....... ... ....+...+++..++|+.+.++.
T Consensus 159 ~~~p~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ln~~~~~~~ 238 (496)
T KOG1192|consen 159 SYVPSPFSLSSGDDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGIIVNASFIFLNSNPLLDF 238 (496)
T ss_pred cccCcccCccccccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHhhhcCeEEEEccCcccCC
Confidence 345444 2222 223444443332100000000000 0 0000000 000 11123344555667777776665
Q ss_pred HHHHHhhhcCCCCccccccccccccccCCCcccccchhccccccCCCC--eEEEEecCCcc---cCCHHHHHHHHHHHhc
Q 012474 229 TELTRLHKDFPIPMFPIGPFHKYCLASSSSLLSQDQSCISWLDKQAAK--SVMYVSFGSIV---VVNVTEFLEIAWGLAN 303 (463)
Q Consensus 229 ~~~~~~~~~~~~~v~~vGpl~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~v~vs~Gs~~---~~~~~~~~~~~~al~~ 303 (463)
+ +....+++++|||++..... .... ...+|++..+.. ++|||||||.. ..+.+....++.++++
T Consensus 239 ~-----~~~~~~~v~~IG~l~~~~~~----~~~~--~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~ 307 (496)
T KOG1192|consen 239 E-----PRPLLPKVIPIGPLHVKDSK----QKSP--LPLEWLDILDESRHSVVYISFGSMVNSADLPEEQKKELAKALES 307 (496)
T ss_pred C-----CCCCCCCceEECcEEecCcc----cccc--ccHHHHHHHhhccCCeEEEECCcccccccCCHHHHHHHHHHHHh
Confidence 2 11124569999999988442 1111 245677664444 89999999998 6899999999999999
Q ss_pred C-CCceEEEEcCCCCCCCccCCCCchhHHHHhcCCCceeeccChhhh-hcCCCCcccccccChhhHHHHHhhCCceeccc
Q 012474 304 S-RVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIVKWAPQQEV-LAHPAVGGFWTHNGWNSTLESICEGVPMICQP 381 (463)
Q Consensus 304 ~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpq~~l-L~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P 381 (463)
. ++.++|++..... ..+++++.++.++|+...+|+||.++ |.|+++++||||||+|||+|++++|||+|++|
T Consensus 308 ~~~~~FiW~~~~~~~------~~~~~~~~~~~~~nV~~~~W~PQ~~lll~H~~v~~FvTHgG~nSt~E~~~~GvP~v~~P 381 (496)
T KOG1192|consen 308 LQGVTFLWKYRPDDS------IYFPEGLPNRGRGNVVLSKWAPQNDLLLDHPAVGGFVTHGGWNSTLESIYSGVPMVCVP 381 (496)
T ss_pred CCCceEEEEecCCcc------hhhhhcCCCCCcCceEEecCCCcHHHhcCCCcCcEEEECCcccHHHHHHhcCCceecCC
Confidence 9 7788999986431 00222222112346677899999998 59999999999999999999999999999999
Q ss_pred cccchhhhHHHHHHHhhceeecCC-ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Q 012474 382 CFGDQLVNARYVSHVWRVGLHLER-KFERREIETAIRRVTVEAEGQEMRERIMHLKEKLEL 441 (463)
Q Consensus 382 ~~~DQ~~na~rv~~~~G~G~~l~~-~~t~~~l~~~i~~~l~~~~~~~~~~~a~~~~~~~~~ 441 (463)
+++||+.||++++++ |.|..+.. .++...+.+++.+++.+ ++|+++++++++.++.
T Consensus 382 lf~DQ~~Na~~i~~~-g~~~v~~~~~~~~~~~~~~~~~il~~---~~y~~~~~~l~~~~~~ 438 (496)
T KOG1192|consen 382 LFGDQPLNARLLVRH-GGGGVLDKRDLVSEELLEAIKEILEN---EEYKEAAKRLSEILRD 438 (496)
T ss_pred ccccchhHHHHHHhC-CCEEEEehhhcCcHHHHHHHHHHHcC---hHHHHHHHHHHHHHHc
Confidence 999999999999997 77777777 67776699999999999 8999999999998873
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.96 E-value=4.3e-27 Score=224.03 Aligned_cols=336 Identities=13% Similarity=0.156 Sum_probs=205.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCC-CCCCCCceEEeCCCCCCCcccccccHHHHHHHHHHhcC
Q 012474 16 RVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPN-PSNYPHFSFNSISESLWESEVSTENAISLLTVLNDKCV 94 (463)
Q Consensus 16 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (463)
||++.+.|+.||++|.++||++|.++||+|+|++.....+. .....|+.++.++..--... .....+........
T Consensus 3 ~i~~~~GGTGGHi~Pala~a~~l~~~g~~v~~vg~~~~~e~~l~~~~g~~~~~~~~~~l~~~----~~~~~~~~~~~~~~ 78 (352)
T PRK12446 3 KIVFTGGGSAGHVTPNLAIIPYLKEDNWDISYIGSHQGIEKTIIEKENIPYYSISSGKLRRY----FDLKNIKDPFLVMK 78 (352)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHhCCCEEEEEECCCccccccCcccCCcEEEEeccCcCCC----chHHHHHHHHHHHH
Confidence 57777777779999999999999999999999998644322 22224788877763211110 01111222212111
Q ss_pred chHHHHHHHHHhCCCCCCCceEEEeCCchh--hHHHHHHHcCCCeEEEeCchhHHHHHHHHHHHHHHhccccccccCCCC
Q 012474 95 VPFQDCLAKLISNGDQEEPVTCLITDAIWH--FAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYLAEQVSFSSD 172 (463)
Q Consensus 95 ~~l~~~l~~l~~~~~~~~~pD~VI~D~~~~--~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 172 (463)
. +...+.-+.+ .+||+||....+. .++.+|..+|+|++..-... .|..
T Consensus 79 ~-~~~~~~i~~~-----~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~------------------~~g~------ 128 (352)
T PRK12446 79 G-VMDAYVRIRK-----LKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDM------------------TPGL------ 128 (352)
T ss_pred H-HHHHHHHHHh-----cCCCEEEecCchhhHHHHHHHHHcCCCEEEECCCC------------------CccH------
Confidence 1 1112222333 7899999987553 36789999999998844331 1111
Q ss_pred CCCccccCCCCCCCcCCCCccccCCCchHHHHHHHHHhhccCCceEEEcchhhhhHHHHHHhhhcCC-CCcccccccccc
Q 012474 173 SQLEKPVTELPPLRVKDIPIIVTHDTRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELTRLHKDFP-IPMFPIGPFHKY 251 (463)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~-~~v~~vGpl~~~ 251 (463)
. -+.+. +.++.+ ..++++. .+.++ ..++++|+...+
T Consensus 129 ------------------------~----nr~~~------~~a~~v-~~~f~~~--------~~~~~~~k~~~tG~Pvr~ 165 (352)
T PRK12446 129 ------------------------A----NKIAL------RFASKI-FVTFEEA--------AKHLPKEKVIYTGSPVRE 165 (352)
T ss_pred ------------------------H----HHHHH------HhhCEE-EEEccch--------hhhCCCCCeEEECCcCCc
Confidence 0 00111 112222 2333321 12223 347888954433
Q ss_pred ccccCCCcccccchhccccccCCCCeEEEEecCCcccCCH-HHHHHHHHHHhcCCCceEEEEcCCCCCCCccCCCCchhH
Q 012474 252 CLASSSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNV-TEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGF 330 (463)
Q Consensus 252 ~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~-~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 330 (463)
... . .. .....+.+.-.+++++|+|+.||.++... +.+..++..+.. +.+++|+++... +.+..
T Consensus 166 ~~~---~-~~-~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~~-~~~vv~~~G~~~---------~~~~~ 230 (352)
T PRK12446 166 EVL---K-GN-REKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELLL-KYQIVHLCGKGN---------LDDSL 230 (352)
T ss_pred ccc---c-cc-chHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhcc-CcEEEEEeCCch---------HHHHH
Confidence 211 0 00 11112222223467899999999987443 334444444432 478888887542 11111
Q ss_pred HHHhcCCCceeecc-Ch-hhhhcCCCCcccccccChhhHHHHHhhCCceeccccc-----cchhhhHHHHHHHhhceeec
Q 012474 331 LEMLDGRGHIVKWA-PQ-QEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCF-----GDQLVNARYVSHVWRVGLHL 403 (463)
Q Consensus 331 ~~~~~~~~~~~~~v-pq-~~lL~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~-----~DQ~~na~rv~~~~G~G~~l 403 (463)
. .. .+..+..|+ ++ .+++..+++ +|||||.+|+.|++++|+|+|++|+. +||..||++++++ |+|..+
T Consensus 231 ~-~~-~~~~~~~f~~~~m~~~~~~adl--vIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~-g~~~~l 305 (352)
T PRK12446 231 Q-NK-EGYRQFEYVHGELPDILAITDF--VISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQ-GYASVL 305 (352)
T ss_pred h-hc-CCcEEecchhhhHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHC-CCEEEc
Confidence 1 11 233556777 54 679999999 99999999999999999999999985 5899999999995 999999
Q ss_pred CC-ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012474 404 ER-KFERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILS 462 (463)
Q Consensus 404 ~~-~~t~~~l~~~i~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 462 (463)
.. .++++.|.+++.+++.|. +.+++++++++ ..++++++++.+++
T Consensus 306 ~~~~~~~~~l~~~l~~ll~~~--~~~~~~~~~~~------------~~~aa~~i~~~i~~ 351 (352)
T PRK12446 306 YEEDVTVNSLIKHVEELSHNN--EKYKTALKKYN------------GKEAIQTIIDHISE 351 (352)
T ss_pred chhcCCHHHHHHHHHHHHcCH--HHHHHHHHHcC------------CCCHHHHHHHHHHh
Confidence 87 899999999999999872 24544333322 23666777777764
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.94 E-value=8.8e-26 Score=214.46 Aligned_cols=305 Identities=17% Similarity=0.186 Sum_probs=193.4
Q ss_pred cEEEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCcccccccHHHHHHHHH---
Q 012474 15 RRVILFPLP-LQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSNYPHFSFNSISESLWESEVSTENAISLLTVLN--- 90 (463)
Q Consensus 15 ~~il~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 90 (463)
|||++...+ |.||+.+++.||++| |||+|+|++.........+ . +....+++-.........+.........
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--rg~~v~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--RGHEVTFITSGPAPEFLKP-R-FPVREIPGLGPIQENGRLDRWKTVRNNIRWL 76 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--ccCceEEEEcCCcHHHhcc-c-cCEEEccCceEeccCCccchHHHHHHHHHhh
Confidence 899999988 779999999999999 6999999998644333322 2 4555554321111111222222221111
Q ss_pred HhcCchHHHHHHHHHhCCCCCCCceEEEeCCchhhHHHHHHHcCCCeEEEeCchhHHHHHHHHHHHHHHhccccccccCC
Q 012474 91 DKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYLAEQVSFS 170 (463)
Q Consensus 91 ~~~~~~l~~~l~~l~~~~~~~~~pD~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 170 (463)
......+++.++.+.+ .+||+||+|. .+.+..+|+..|+|++.+........ +....+
T Consensus 77 ~~~~~~~~~~~~~l~~-----~~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~~~----------~~~~~~------ 134 (318)
T PF13528_consen 77 ARLARRIRREIRWLRE-----FRPDLVISDF-YPLAALAARRAGIPVIVISNQYWFLH----------PNFWLP------ 134 (318)
T ss_pred HHHHHHHHHHHHHHHh-----cCCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHccc----------ccCCcc------
Confidence 1122333334444443 7899999995 45577899999999998877632210 000000
Q ss_pred CCCCCccccCCCCCCCcCCCCccccCCCchHHHHHHHHHh-h-ccCCceEEEcchhhhhHHHHHHhhhcCCCCccccccc
Q 012474 171 SDSQLEKPVTELPPLRVKDIPIIVTHDTRNFHQLISAVVS-K-TKACSGLIWNSFEDLEQTELTRLHKDFPIPMFPIGPF 248 (463)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~l~~s~~~le~~~~~~~~~~~~~~v~~vGpl 248 (463)
........+.+... . ...++..+..++. .... . ...+.++||+
T Consensus 135 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~------~--~~~~~~~~p~ 179 (318)
T PF13528_consen 135 --------------------------WDQDFGRLIERYIDRYHFPPADRRLALSFY-PPLP------P--FFRVPFVGPI 179 (318)
T ss_pred --------------------------hhhhHHHHHHHhhhhccCCcccceecCCcc-cccc------c--cccccccCch
Confidence 01112222222222 1 3444555544444 1110 0 1236678877
Q ss_pred cccccccCCCcccccchhccccccCCCCeEEEEecCCcccCCHHHHHHHHHHHhcCC-CceEEEEcCCCCCCCccCCCCc
Q 012474 249 HKYCLASSSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSR-VPFLWVVRPGLVPGVEWLEPLP 327 (463)
Q Consensus 249 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~-~~~v~~~~~~~~~~~~~~~~~~ 327 (463)
..+... ... ..+++.|+|++|..... .++++++..+ .++++. +...
T Consensus 180 ~~~~~~------~~~---------~~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~~----------- 226 (318)
T PF13528_consen 180 IRPEIR------ELP---------PEDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPNA----------- 226 (318)
T ss_pred hccccc------ccC---------CCCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCCc-----------
Confidence 654331 000 12456899999987642 6667777776 455544 4321
Q ss_pred hhHHHHhcCCCceeecc-C-hhhhhcCCCCcccccccChhhHHHHHhhCCceecccc--ccchhhhHHHHHHHhhceeec
Q 012474 328 KGFLEMLDGRGHIVKWA-P-QQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPC--FGDQLVNARYVSHVWRVGLHL 403 (463)
Q Consensus 328 ~~~~~~~~~~~~~~~~v-p-q~~lL~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~--~~DQ~~na~rv~~~~G~G~~l 403 (463)
.+...+|+.+.+|. + ..+++..|++ +|+|||+||++||+++|+|+|++|. ..||..||+++++ +|+|..+
T Consensus 227 ---~~~~~~ni~~~~~~~~~~~~~m~~ad~--vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~-~G~~~~~ 300 (318)
T PF13528_consen 227 ---ADPRPGNIHVRPFSTPDFAELMAAADL--VISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEE-LGLGIVL 300 (318)
T ss_pred ---ccccCCCEEEeecChHHHHHHHHhCCE--EEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHH-CCCeEEc
Confidence 01114556888876 4 4789999999 9999999999999999999999999 7899999999999 6999999
Q ss_pred CC-ccCHHHHHHHHHHH
Q 012474 404 ER-KFERREIETAIRRV 419 (463)
Q Consensus 404 ~~-~~t~~~l~~~i~~~ 419 (463)
+. +++++.|.+.|.++
T Consensus 301 ~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 301 SQEDLTPERLAEFLERL 317 (318)
T ss_pred ccccCCHHHHHHHHhcC
Confidence 87 89999999999764
No 30
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.93 E-value=8.5e-24 Score=198.70 Aligned_cols=309 Identities=17% Similarity=0.172 Sum_probs=191.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCC-eEEEEeCCCCC-CCCCCCCCceEEeCCCCCCCcccccccHHHHHHHHHHh
Q 012474 15 RRVILFPLPLQGHINPMLQLASILYSKGF-SITIIHTNFNS-PNPSNYPHFSFNSISESLWESEVSTENAISLLTVLNDK 92 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh-~Vt~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (463)
|+|++...++.||+.|.++|+++|.++|+ +|.++.+.... ....+..++.++.++..-.............+ ..
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~~~~~~~~~I~~~~~~~~~~~~~~~~~~----~~ 76 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKRGWEQVIVLGTGDGLEAFLVKQYGIEFELIPSGGLRRKGSLKLLKAPF----KL 76 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhhCccEEEEecccccceeeeccccCceEEEEecccccccCcHHHHHHHH----HH
Confidence 57888888888999999999999999999 57777664332 22233347888877743332221111121222 22
Q ss_pred cCchHHHHHHHHHhCCCCCCCceEEEeCCch--hhHHHHHHHcCCCeEEEeCchhHHHHHHHHHHHHHHhccccccccCC
Q 012474 93 CVVPFQDCLAKLISNGDQEEPVTCLITDAIW--HFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYLAEQVSFS 170 (463)
Q Consensus 93 ~~~~l~~~l~~l~~~~~~~~~pD~VI~D~~~--~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 170 (463)
+.. +.+...-+.+ .+||+||.-..+ ..+..+|..+|||.+..- ....|..
T Consensus 77 ~~~-~~~a~~il~~-----~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihE------------------qn~~~G~---- 128 (357)
T COG0707 77 LKG-VLQARKILKK-----LKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHE------------------QNAVPGL---- 128 (357)
T ss_pred HHH-HHHHHHHHHH-----cCCCEEEecCCccccHHHHHHHhCCCCEEEEe------------------cCCCcch----
Confidence 211 1222222332 689999986544 445678888999999832 2333332
Q ss_pred CCCCCccccCCCCCCCcCCCCccccCCCchHHHHHHHHHhhccCCceEEEcchhhhhHHHHHHhhhcC-CCCccccc-cc
Q 012474 171 SDSQLEKPVTELPPLRVKDIPIIVTHDTRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELTRLHKDF-PIPMFPIG-PF 248 (463)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~-~~~v~~vG-pl 248 (463)
..+++.+ .++. +..+++..+. .+ +..++.+| |+
T Consensus 129 ------------------------------ank~~~~------~a~~-V~~~f~~~~~--------~~~~~~~~~tG~Pv 163 (357)
T COG0707 129 ------------------------------ANKILSK------FAKK-VASAFPKLEA--------GVKPENVVVTGIPV 163 (357)
T ss_pred ------------------------------hHHHhHH------hhce-eeeccccccc--------cCCCCceEEecCcc
Confidence 0111111 1111 2233332111 00 12377777 55
Q ss_pred cccccccCCCcccccchhccccccCCCCeEEEEecCCcccCCH-HHHHHHHHHHhcCCCceEEEEcCCCCCCCccCCCCc
Q 012474 249 HKYCLASSSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNV-TEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLP 327 (463)
Q Consensus 249 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~-~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~ 327 (463)
...-. . .+.. -..+... .++++|+|+.||+++... +.+..+...+.+ +..+++.++.+. -
T Consensus 164 r~~~~----~-~~~~--~~~~~~~-~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~~----------~ 224 (357)
T COG0707 164 RPEFE----E-LPAA--EVRKDGR-LDKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKND----------L 224 (357)
T ss_pred cHHhh----c-cchh--hhhhhcc-CCCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcch----------H
Confidence 44322 1 1111 1111111 167899999999987322 223333334433 467777776542 1
Q ss_pred hhHHHHhc-CC-CceeeccCh-hhhhcCCCCcccccccChhhHHHHHhhCCceeccccc----cchhhhHHHHHHHhhce
Q 012474 328 KGFLEMLD-GR-GHIVKWAPQ-QEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCF----GDQLVNARYVSHVWRVG 400 (463)
Q Consensus 328 ~~~~~~~~-~~-~~~~~~vpq-~~lL~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~----~DQ~~na~rv~~~~G~G 400 (463)
+....... .+ +.+..|..+ ..+++.+++ +||++|.+|+.|++++|+|.|.+|.- .||..||..++++ |.|
T Consensus 225 ~~~~~~~~~~~~~~v~~f~~dm~~~~~~ADL--vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~-gaa 301 (357)
T COG0707 225 EELKSAYNELGVVRVLPFIDDMAALLAAADL--VISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKA-GAA 301 (357)
T ss_pred HHHHHHHhhcCcEEEeeHHhhHHHHHHhccE--EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhC-CCE
Confidence 22222222 22 566789887 779999999 99999999999999999999999974 4899999999996 999
Q ss_pred eecCC-ccCHHHHHHHHHHHhcc
Q 012474 401 LHLER-KFERREIETAIRRVTVE 422 (463)
Q Consensus 401 ~~l~~-~~t~~~l~~~i~~~l~~ 422 (463)
..++. .+|++.+.+.|.+++++
T Consensus 302 ~~i~~~~lt~~~l~~~i~~l~~~ 324 (357)
T COG0707 302 LVIRQSELTPEKLAELILRLLSN 324 (357)
T ss_pred EEeccccCCHHHHHHHHHHHhcC
Confidence 99999 99999999999999998
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.90 E-value=1.7e-22 Score=191.29 Aligned_cols=303 Identities=15% Similarity=0.140 Sum_probs=168.8
Q ss_pred EEEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCce-EEeCCCCCCCccc-ccccHHHHHHHHHHh
Q 012474 16 RVILFPLP-LQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSNYPHFS-FNSISESLWESEV-STENAISLLTVLNDK 92 (463)
Q Consensus 16 ~il~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 92 (463)
||++...+ +.||+.|.++|+++|.+ ||+|+|++.......... .++. +...+. ..-... ...+....+......
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~~-g~ev~~~~~~~~~~~~~~-~~~~~~~~~p~-~~~~~~~~~~~~~~~l~~~~~~ 77 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALKN-DYEVSYIASGRSKNYISK-YGFKVFETFPG-IKLKGEDGKVNIVKTLRNKEYS 77 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHhC-CCeEEEEEcCCHHHhhhh-hcCcceeccCC-ceEeecCCcCcHHHHHHhhccc
Confidence 46665555 55999999999999999 999999987552222222 2443 333331 110000 001222222111011
Q ss_pred cCchHHHHHHHHHhCCCCCCCceEEEeCCchhhHHHHHHHcCCCeEEEeCchhHHHHHHHHHHHHHHhccccccccCCCC
Q 012474 93 CVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYLAEQVSFSSD 172 (463)
Q Consensus 93 ~~~~l~~~l~~l~~~~~~~~~pD~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 172 (463)
....+.+..+.+.+ .+||+||+| +.+.+..+|+.+|||++.+..+... .+ |..
T Consensus 78 ~~~~~~~~~~~l~~-----~~pDlVi~d-~~~~~~~aA~~~~iP~i~i~~q~~~--------------~~-~~~------ 130 (321)
T TIGR00661 78 PKKAIRREINIIRE-----YNPDLIISD-FEYSTVVAAKLLKIPVICISNQNYT--------------RY-PLK------ 130 (321)
T ss_pred cHHHHHHHHHHHHh-----cCCCEEEEC-CchHHHHHHHhcCCCEEEEecchhh--------------cC-Ccc------
Confidence 11233344444443 789999999 5566788999999999987764211 00 100
Q ss_pred CCCccccCCCCCCCcCCCCccccCCCchHHHHHHHHH-hhccCCceEEEcchhhhhHHHHHHhhhcCCCCcc--cccccc
Q 012474 173 SQLEKPVTELPPLRVKDIPIIVTHDTRNFHQLISAVV-SKTKACSGLIWNSFEDLEQTELTRLHKDFPIPMF--PIGPFH 249 (463)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~v~--~vGpl~ 249 (463)
. +.......+.. .....++.++...++.... . .+++. .-+|..
T Consensus 131 ------------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~-~p~~~~~~~~~~~ 176 (321)
T TIGR00661 131 ------------------------T-DLIVYPTMAALRIFNERCERFIVPDYPFPYT--------I-CPKIIKNMEGPLI 176 (321)
T ss_pred ------------------------c-chhHHHHHHHHHHhccccceEeeecCCCCCC--------C-CccccccCCCccc
Confidence 0 00000001111 1112222222222221110 0 00110 001111
Q ss_pred ccccccCCCcccccchhccccccCCCCeEEEEecCCcccCCHHHHHHHHHHHhcCCCceEEEEcCCCCCCCccCCCCchh
Q 012474 250 KYCLASSSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKG 329 (463)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 329 (463)
. .+..++... .++.|++.+|+... ..+++++++.+. +.+++..... ..+
T Consensus 177 ~-------------~~~~~~~~~--~~~~iLv~~g~~~~------~~l~~~l~~~~~-~~~i~~~~~~--------~~~- 225 (321)
T TIGR00661 177 R-------------YDVDDVDNY--GEDYILVYIGFEYR------YKILELLGKIAN-VKFVCYSYEV--------AKN- 225 (321)
T ss_pred c-------------hhhhccccC--CCCcEEEECCcCCH------HHHHHHHHhCCC-eEEEEeCCCC--------Ccc-
Confidence 0 011222221 35567777777542 345667776653 2233222110 111
Q ss_pred HHHHhcCCCceeeccC--hhhhhcCCCCcccccccChhhHHHHHhhCCceecccccc--chhhhHHHHHHHhhceeecCC
Q 012474 330 FLEMLDGRGHIVKWAP--QQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFG--DQLVNARYVSHVWRVGLHLER 405 (463)
Q Consensus 330 ~~~~~~~~~~~~~~vp--q~~lL~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~--DQ~~na~rv~~~~G~G~~l~~ 405 (463)
..++|+.+.+|.| ..++|+.+++ +|||||++|++||+++|+|++++|..+ ||..||+.+++ .|+|+.++.
T Consensus 226 ---~~~~~v~~~~~~~~~~~~~l~~ad~--vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~-~g~~~~l~~ 299 (321)
T TIGR00661 226 ---SYNENVEIRRITTDNFKELIKNAEL--VITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLED-LGCGIALEY 299 (321)
T ss_pred ---ccCCCEEEEECChHHHHHHHHhCCE--EEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHH-CCCEEEcCh
Confidence 1235668889997 3678888988 999999999999999999999999865 89999999999 599999987
Q ss_pred -ccCHHHHHHHHHHHhcc
Q 012474 406 -KFERREIETAIRRVTVE 422 (463)
Q Consensus 406 -~~t~~~l~~~i~~~l~~ 422 (463)
++ ++.+++.++++|
T Consensus 300 ~~~---~~~~~~~~~~~~ 314 (321)
T TIGR00661 300 KEL---RLLEAILDIRNM 314 (321)
T ss_pred hhH---HHHHHHHhcccc
Confidence 44 667777777777
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.86 E-value=1.3e-19 Score=175.06 Aligned_cols=342 Identities=13% Similarity=0.104 Sum_probs=198.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCC-CCCCCCCCceEEeCCCCCCCcccccccHHHHHHHHHHhc
Q 012474 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNS-PNPSNYPHFSFNSISESLWESEVSTENAISLLTVLNDKC 93 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (463)
|||+++..+..||...++.|+++|.++||+|++++.+... .......|++++.++..-.... .....+.......
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~g~ev~vv~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----~~~~~l~~~~~~~ 77 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKRGWEVLYLGTARGMEARLVPKAGIEFHFIPSGGLRRK----GSLANLKAPFKLL 77 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhCCCEEEEEECCCchhhhccccCCCcEEEEeccCcCCC----ChHHHHHHHHHHH
Confidence 8999999988899999999999999999999999985421 1111214677776653111111 1111111111110
Q ss_pred CchHHHHHHHHHhCCCCCCCceEEEeCCc--hhhHHHHHHHcCCCeEEEeCchhHHHHHHHHHHHHHHhccccccccCCC
Q 012474 94 VVPFQDCLAKLISNGDQEEPVTCLITDAI--WHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYLAEQVSFSS 171 (463)
Q Consensus 94 ~~~l~~~l~~l~~~~~~~~~pD~VI~D~~--~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 171 (463)
..+.. +.++.+. .+||+|++... .+.+..++...++|.+....... +..
T Consensus 78 -~~~~~-~~~~ik~----~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~------------------~~~----- 128 (357)
T PRK00726 78 -KGVLQ-ARKILKR----FKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNAV------------------PGL----- 128 (357)
T ss_pred -HHHHH-HHHHHHh----cCCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCCC------------------ccH-----
Confidence 11111 2233332 67999999962 34455667778999986322100 000
Q ss_pred CCCCccccCCCCCCCcCCCCccccCCCchHHHHHHHHHhhccCCceEEEcchhhhhHHHHHHhhhcCCCCcccccccccc
Q 012474 172 DSQLEKPVTELPPLRVKDIPIIVTHDTRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELTRLHKDFPIPMFPIGPFHKY 251 (463)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~v~~vGpl~~~ 251 (463)
..+++ ...+|.++..+...+. +.-+.+++++|.....
T Consensus 129 -----------------------------~~r~~------~~~~d~ii~~~~~~~~--------~~~~~~i~vi~n~v~~ 165 (357)
T PRK00726 129 -----------------------------ANKLL------ARFAKKVATAFPGAFP--------EFFKPKAVVTGNPVRE 165 (357)
T ss_pred -----------------------------HHHHH------HHHhchheECchhhhh--------ccCCCCEEEECCCCCh
Confidence 00000 1122333333322111 0012447777744332
Q ss_pred ccccCCCcccccchhccccccCCCCeEEEEecCCcccCCHHHHHHHHHHHhcCCC--ceEEEEcCCCCCCCccCCCCchh
Q 012474 252 CLASSSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRV--PFLWVVRPGLVPGVEWLEPLPKG 329 (463)
Q Consensus 252 ~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~--~~v~~~~~~~~~~~~~~~~~~~~ 329 (463)
... .. +.. -.. +...+++++|++..|+... ......+.+++.+... .+++.++.+. . +.
T Consensus 166 ~~~---~~-~~~--~~~-~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~~~~~~~~~~~~G~g~------~----~~ 226 (357)
T PRK00726 166 EIL---AL-AAP--PAR-LAGREGKPTLLVVGGSQGA--RVLNEAVPEALALLPEALQVIHQTGKGD------L----EE 226 (357)
T ss_pred Hhh---cc-cch--hhh-ccCCCCCeEEEEECCcHhH--HHHHHHHHHHHHHhhhCcEEEEEcCCCc------H----HH
Confidence 111 00 000 011 1112245567776665432 1122223355555433 3445555432 1 22
Q ss_pred HHHH--hcCCCceeeccCh-hhhhcCCCCcccccccChhhHHHHHhhCCceecccc----ccchhhhHHHHHHHhhceee
Q 012474 330 FLEM--LDGRGHIVKWAPQ-QEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPC----FGDQLVNARYVSHVWRVGLH 402 (463)
Q Consensus 330 ~~~~--~~~~~~~~~~vpq-~~lL~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~----~~DQ~~na~rv~~~~G~G~~ 402 (463)
+.+. ..-++.+.+|+.+ .++++.+++ +|+|+|.++++||+++|+|+|++|. .+||..|+..+.+. |.|..
T Consensus 227 ~~~~~~~~~~v~~~g~~~~~~~~~~~~d~--~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~-~~g~~ 303 (357)
T PRK00726 227 VRAAYAAGINAEVVPFIDDMAAAYAAADL--VICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVDA-GAALL 303 (357)
T ss_pred HHHHhhcCCcEEEeehHhhHHHHHHhCCE--EEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHC-CCEEE
Confidence 2211 2223567788854 789999999 9999999999999999999999997 46899999999995 99999
Q ss_pred cCC-ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 012474 403 LER-KFERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHIL 461 (463)
Q Consensus 403 l~~-~~t~~~l~~~i~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 461 (463)
++. .++++++.++|.++++| +++++...+-+.... +.++..+.++.+.+.+.
T Consensus 304 ~~~~~~~~~~l~~~i~~ll~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 304 IPQSDLTPEKLAEKLLELLSD---PERLEAMAEAARALG----KPDAAERLADLIEELAR 356 (357)
T ss_pred EEcccCCHHHHHHHHHHHHcC---HHHHHHHHHHHHhcC----CcCHHHHHHHHHHHHhh
Confidence 987 77899999999999999 566554444444333 45667777777766653
No 33
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.83 E-value=2.9e-18 Score=153.28 Aligned_cols=331 Identities=17% Similarity=0.164 Sum_probs=201.2
Q ss_pred CCCCcEEEEEcCC--CccCHHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCc--ccccccHHH
Q 012474 11 QKKGRRVILFPLP--LQGHINPMLQLASILYSK--GFSITIIHTNFNSPNPSNYPHFSFNSISESLWES--EVSTENAIS 84 (463)
Q Consensus 11 ~~~~~~il~~~~~--~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~ 84 (463)
.++.+||+|++.- +.||+.+++.||+.|++. |.+|++++.........-..|++|+.+|.-.... .....+...
T Consensus 6 ~~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~~F~~~~gVd~V~LPsl~k~~~G~~~~~d~~~ 85 (400)
T COG4671 6 ASKRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAGGFPGPAGVDFVKLPSLIKGDNGEYGLVDLDG 85 (400)
T ss_pred hhccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccCCCCCcccCceEecCceEecCCCceeeeecCC
Confidence 3556799999987 458999999999999998 9999999997554444433689999999533222 111111111
Q ss_pred HHHHHHHhcCchHHHHHHHHHhCCCCCCCceEEEeCCchhhHHHHHHHcCCCeEEEeCchhHHHHHHHHHHHHHHhcccc
Q 012474 85 LLTVLNDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYLA 164 (463)
Q Consensus 85 ~~~~~~~~~~~~l~~~l~~l~~~~~~~~~pD~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~p 164 (463)
-.+.+.+..... ++..+.. .+||++|+|.+-.+ + -.++ .|..- .+...+ ..
T Consensus 86 ~l~e~~~~Rs~l---il~t~~~-----fkPDi~IVd~~P~G-l--r~EL-~ptL~----------------yl~~~~-t~ 136 (400)
T COG4671 86 DLEETKKLRSQL---ILSTAET-----FKPDIFIVDKFPFG-L--RFEL-LPTLE----------------YLKTTG-TR 136 (400)
T ss_pred CHHHHHHHHHHH---HHHHHHh-----cCCCEEEEeccccc-h--hhhh-hHHHH----------------HHhhcC-Cc
Confidence 122222211121 3444443 78999999976553 1 1111 01100 000000 00
Q ss_pred ccccCCCCCCCccccCCCCCCCcCCCCccc--cCCCchHHHHHHHHHhhccCCceEEEcchhhhhHHHHHHhhhcCC---
Q 012474 165 EQVSFSSDSQLEKPVTELPPLRVKDIPIIV--THDTRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELTRLHKDFP--- 239 (463)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~--- 239 (463)
...+.++ ..+.+... .+++......+.+ ..|.+++-..|.|-.+ ...|+
T Consensus 137 ~vL~lr~---------------i~D~p~~~~~~w~~~~~~~~I~r------~yD~V~v~GdP~f~d~-----~~~~~~~~ 190 (400)
T COG4671 137 LVLGLRS---------------IRDIPQELEADWRRAETVRLINR------FYDLVLVYGDPDFYDP-----LTEFPFAP 190 (400)
T ss_pred ceeehHh---------------hhhchhhhccchhhhHHHHHHHH------hheEEEEecCccccCh-----hhcCCccH
Confidence 0000000 01111100 0011111122222 2356666666655432 22232
Q ss_pred ---CCccccccccccccccCCCcccccchhccccccCCCCeEEEEecCCcccCCHHHHHHHHHHHhc-CCCc--eEEEEc
Q 012474 240 ---IPMFPIGPFHKYCLASSSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLAN-SRVP--FLWVVR 313 (463)
Q Consensus 240 ---~~v~~vGpl~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~-~~~~--~v~~~~ 313 (463)
..+.|+|.+ .++-. ...+|.. .. +++.-|+||-|... ...+++...+.|-.. .+.+ .+++++
T Consensus 191 ~i~~k~~ytG~v-q~~~~--~~~~p~~-------~~-pE~~~Ilvs~GGG~-dG~eLi~~~l~A~~~l~~l~~~~~ivtG 258 (400)
T COG4671 191 AIRAKMRYTGFV-QRSLP--HLPLPPH-------EA-PEGFDILVSVGGGA-DGAELIETALAAAQLLAGLNHKWLIVTG 258 (400)
T ss_pred hhhhheeEeEEe-eccCc--CCCCCCc-------CC-CccceEEEecCCCh-hhHHHHHHHHHHhhhCCCCCcceEEEeC
Confidence 338999998 33210 0111111 11 35568999988865 477777777776655 2333 444454
Q ss_pred CCCCCCCccCCCCchhHHHH----hc--CCCceeeccCh-hhhhcCCCCcccccccChhhHHHHHhhCCceeccccc---
Q 012474 314 PGLVPGVEWLEPLPKGFLEM----LD--GRGHIVKWAPQ-QEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCF--- 383 (463)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~vpq-~~lL~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~--- 383 (463)
+. .|+...++ .+ +++.+..|-.+ ..++..++. +|+-||+||++|-|.+|+|.|++|..
T Consensus 259 P~----------MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~~--vVSm~GYNTvCeILs~~k~aLivPr~~p~ 326 (400)
T COG4671 259 PF----------MPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGARL--VVSMGGYNTVCEILSFGKPALIVPRAAPR 326 (400)
T ss_pred CC----------CCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhhe--eeecccchhhhHHHhCCCceEEeccCCCc
Confidence 43 55443333 33 67788899887 789999999 99999999999999999999999986
Q ss_pred cchhhhHHHHHHHhhceeecCC-ccCHHHHHHHHHHHhc
Q 012474 384 GDQLVNARYVSHVWRVGLHLER-KFERREIETAIRRVTV 421 (463)
Q Consensus 384 ~DQ~~na~rv~~~~G~G~~l~~-~~t~~~l~~~i~~~l~ 421 (463)
-||...|+|+++ ||+.-++-. .+|++.+.++|...++
T Consensus 327 eEQliRA~Rl~~-LGL~dvL~pe~lt~~~La~al~~~l~ 364 (400)
T COG4671 327 EEQLIRAQRLEE-LGLVDVLLPENLTPQNLADALKAALA 364 (400)
T ss_pred HHHHHHHHHHHh-cCcceeeCcccCChHHHHHHHHhccc
Confidence 499999999999 899998887 9999999999999998
No 34
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.82 E-value=3.6e-18 Score=164.60 Aligned_cols=314 Identities=15% Similarity=0.116 Sum_probs=181.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCC-CCCCCCceEEeCCCCCCCcccccccHHHHHHHHHHhcC
Q 012474 16 RVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPN-PSNYPHFSFNSISESLWESEVSTENAISLLTVLNDKCV 94 (463)
Q Consensus 16 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (463)
||++...+..||....+.|++.|.++||+|++++....... .....+++++.++..-.............+...
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 75 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRERGAEVLFLGTKRGLEARLVPKAGIPLHTIPVGGLRRKGSLKKLKAPFKLL----- 75 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCCcchhhcccccCCceEEEEecCcCCCChHHHHHHHHHHH-----
Confidence 57888888889999999999999999999999987532111 111135666666531111110001111111111
Q ss_pred chHHHHHHHHHhCCCCCCCceEEEeCCc--hhhHHHHHHHcCCCeEEEeCchhHHHHHHHHHHHHHHhccccccccCCCC
Q 012474 95 VPFQDCLAKLISNGDQEEPVTCLITDAI--WHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYLAEQVSFSSD 172 (463)
Q Consensus 95 ~~l~~~l~~l~~~~~~~~~pD~VI~D~~--~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 172 (463)
..+. .+.++.+. .+||+|+++.. ...+..+|...|+|++....... +..
T Consensus 76 ~~~~-~~~~~i~~----~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~~~------------------~~~------ 126 (350)
T cd03785 76 KGVL-QARKILKK----FKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQNAV------------------PGL------ 126 (350)
T ss_pred HHHH-HHHHHHHh----cCCCEEEECCCCcchHHHHHHHHhCCCEEEEcCCCC------------------ccH------
Confidence 1111 12233332 67999998752 34456778889999886321100 000
Q ss_pred CCCccccCCCCCCCcCCCCccccCCCchHHHHHHHHHhhccCCceEEEcchhhhhHHHHHHhhhcCCCCccccccccccc
Q 012474 173 SQLEKPVTELPPLRVKDIPIIVTHDTRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELTRLHKDFPIPMFPIGPFHKYC 252 (463)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~v~~vGpl~~~~ 252 (463)
..+. ....++.+++.+....+. . -+.++.++|......
T Consensus 127 ----------------------------~~~~------~~~~~~~vi~~s~~~~~~-----~---~~~~~~~i~n~v~~~ 164 (350)
T cd03785 127 ----------------------------ANRL------LARFADRVALSFPETAKY-----F---PKDKAVVTGNPVREE 164 (350)
T ss_pred ----------------------------HHHH------HHHhhCEEEEcchhhhhc-----C---CCCcEEEECCCCchH
Confidence 0000 012245556555443332 0 023466676433221
Q ss_pred cccCCCcccccchhccccccCCCCeEEEEecCCcccCC-HHHHHHHHHHHhcCCCceEEEEcCCCCCCCccCCCCchhHH
Q 012474 253 LASSSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVN-VTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFL 331 (463)
Q Consensus 253 ~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~-~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 331 (463)
.. . +.. . ...+...+++++|++..|+..... .+.+..++..+...+..+++.++.+. .+.+.+.+.
T Consensus 165 ~~---~--~~~-~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~~~~~~~~~i~G~g~------~~~l~~~~~ 231 (350)
T cd03785 165 IL---A--LDR-E-RARLGLRPGKPTLLVFGGSQGARAINEAVPEALAELLRKRLQVIHQTGKGD------LEEVKKAYE 231 (350)
T ss_pred Hh---h--hhh-h-HHhcCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhccCeEEEEEcCCcc------HHHHHHHHh
Confidence 10 0 000 0 112222234556667666654311 12223334444433344555555431 111222221
Q ss_pred HHhcCCCceeeccC-hhhhhcCCCCcccccccChhhHHHHHhhCCceecccc----ccchhhhHHHHHHHhhceeecCC-
Q 012474 332 EMLDGRGHIVKWAP-QQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPC----FGDQLVNARYVSHVWRVGLHLER- 405 (463)
Q Consensus 332 ~~~~~~~~~~~~vp-q~~lL~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~----~~DQ~~na~rv~~~~G~G~~l~~- 405 (463)
+. .+|+.+.+|+. ..++|+.+++ +|+++|.+|+.||+++|+|+|++|. ..+|..|++.+.+. |.|..++.
T Consensus 232 ~~-~~~v~~~g~~~~~~~~l~~ad~--~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~-g~g~~v~~~ 307 (350)
T cd03785 232 EL-GVNYEVFPFIDDMAAAYAAADL--VISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVKA-GAAVLIPQE 307 (350)
T ss_pred cc-CCCeEEeehhhhHHHHHHhcCE--EEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhC-CCEEEEecC
Confidence 11 35788889984 4789999999 9999999999999999999999986 46899999999995 99999887
Q ss_pred ccCHHHHHHHHHHHhcc
Q 012474 406 KFERREIETAIRRVTVE 422 (463)
Q Consensus 406 ~~t~~~l~~~i~~~l~~ 422 (463)
..+++++.++|.++++|
T Consensus 308 ~~~~~~l~~~i~~ll~~ 324 (350)
T cd03785 308 ELTPERLAAALLELLSD 324 (350)
T ss_pred CCCHHHHHHHHHHHhcC
Confidence 47999999999999988
No 35
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.78 E-value=3.1e-16 Score=151.03 Aligned_cols=307 Identities=16% Similarity=0.170 Sum_probs=169.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCC-CCCCCCCceEEeCCCCCCCcccccccHHHHHHHHHHhc
Q 012474 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSP-NPSNYPHFSFNSISESLWESEVSTENAISLLTVLNDKC 93 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (463)
|||+|++.+..||+.....|+++|.++||+|++++.+.... ...+..|++++.++...... ......+.......
T Consensus 1 ~~i~~~~g~~~g~~~~~~~La~~L~~~g~eV~vv~~~~~~~~~~~~~~g~~~~~i~~~~~~~----~~~~~~l~~~~~~~ 76 (348)
T TIGR01133 1 KKVVLAAGGTGGHIFPALAVAEELIKRGVEVLWLGTKRGLEKRLVPKAGIEFYFIPVGGLRR----KGSFRLIKTPLKLL 76 (348)
T ss_pred CeEEEEeCccHHHHhHHHHHHHHHHhCCCEEEEEeCCCcchhcccccCCCceEEEeccCcCC----CChHHHHHHHHHHH
Confidence 68999999999999988899999999999999998743211 11122467666665321111 11112221111111
Q ss_pred CchHHHHHHHHHhCCCCCCCceEEEeCCch--hhHHHHHHHcCCCeEEEeCchhHHHHHHHHHHHHHHhccccccccCCC
Q 012474 94 VVPFQDCLAKLISNGDQEEPVTCLITDAIW--HFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYLAEQVSFSS 171 (463)
Q Consensus 94 ~~~l~~~l~~l~~~~~~~~~pD~VI~D~~~--~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 171 (463)
..+.. +.++.+. .+||+|++.... ..+..++...|+|.+....... +.
T Consensus 77 -~~~~~-l~~~i~~----~~pDvVi~~~~~~~~~~~~~~~~~~~p~v~~~~~~~------------------~~------ 126 (348)
T TIGR01133 77 -KAVFQ-ARRILKK----FKPDAVIGFGGYVSGPAGLAAKLLGIPLFHHEQNAV------------------PG------ 126 (348)
T ss_pred -HHHHH-HHHHHHh----cCCCEEEEcCCcccHHHHHHHHHcCCCEEEECCCCC------------------cc------
Confidence 11112 2233332 689999987533 3345567778999874211100 00
Q ss_pred CCCCccccCCCCCCCcCCCCccccCCCchHHHHHHHHHhhccCCceEEEcchhhhhHHHHHHhhhcCCCCcccccccccc
Q 012474 172 DSQLEKPVTELPPLRVKDIPIIVTHDTRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELTRLHKDFPIPMFPIGPFHKY 251 (463)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~v~~vGpl~~~ 251 (463)
...+++ .+.+|.+++.+...-+. + ..+++|.-...
T Consensus 127 ----------------------------~~~~~~------~~~~d~ii~~~~~~~~~---------~--~~~~i~n~v~~ 161 (348)
T TIGR01133 127 ----------------------------LTNKLL------SRFAKKVLISFPGAKDH---------F--EAVLVGNPVRQ 161 (348)
T ss_pred ----------------------------HHHHHH------HHHhCeeEECchhHhhc---------C--CceEEcCCcCH
Confidence 000010 12345555544332221 1 12444422111
Q ss_pred ccccCCCcccccchhccccccCCCCeEEEEecCCcccCCHHHHHHHHHHHhc---CCCceEEEEcCCCCCCCccCCCCch
Q 012474 252 CLASSSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLAN---SRVPFLWVVRPGLVPGVEWLEPLPK 328 (463)
Q Consensus 252 ~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~---~~~~~v~~~~~~~~~~~~~~~~~~~ 328 (463)
... . .+.. ...+...+++++|.+..|+... ......+.++++. .+.++++..++.. . +
T Consensus 162 ~~~---~-~~~~---~~~~~~~~~~~~i~~~gg~~~~--~~~~~~l~~a~~~l~~~~~~~~~~~g~~~---------~-~ 222 (348)
T TIGR01133 162 EIR---S-LPVP---RERFGLREGKPTILVLGGSQGA--KILNELVPKALAKLAEKGIQIVHQTGKND---------L-E 222 (348)
T ss_pred HHh---c-ccch---hhhcCCCCCCeEEEEECCchhH--HHHHHHHHHHHHHHhhcCcEEEEECCcch---------H-H
Confidence 100 0 0000 1112222234455554455442 1112223344433 3345554444321 1 2
Q ss_pred hHHHHhcCCC--ceeecc--ChhhhhcCCCCcccccccChhhHHHHHhhCCceeccccc---cchhhhHHHHHHHhhcee
Q 012474 329 GFLEMLDGRG--HIVKWA--PQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCF---GDQLVNARYVSHVWRVGL 401 (463)
Q Consensus 329 ~~~~~~~~~~--~~~~~v--pq~~lL~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~---~DQ~~na~rv~~~~G~G~ 401 (463)
.+.+...+.. .++.|. .-.++|+.+++ +|+++|.+|+.||+++|+|+|++|.. .+|..|+..+++. |.|.
T Consensus 223 ~l~~~~~~~~l~~~v~~~~~~~~~~l~~ad~--~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~-~~G~ 299 (348)
T TIGR01133 223 KVKNVYQELGIEAIVTFIDENMAAAYAAADL--VISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDL-GAGL 299 (348)
T ss_pred HHHHHHhhCCceEEecCcccCHHHHHHhCCE--EEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHC-CCEE
Confidence 2222222111 223344 44789999999 99999988999999999999999863 5788899999994 9999
Q ss_pred ecCC-ccCHHHHHHHHHHHhcc
Q 012474 402 HLER-KFERREIETAIRRVTVE 422 (463)
Q Consensus 402 ~l~~-~~t~~~l~~~i~~~l~~ 422 (463)
.++. ..++++|.++|.++++|
T Consensus 300 ~~~~~~~~~~~l~~~i~~ll~~ 321 (348)
T TIGR01133 300 VIRQKELLPEKLLEALLKLLLD 321 (348)
T ss_pred EEecccCCHHHHHHHHHHHHcC
Confidence 8876 66899999999999998
No 36
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.78 E-value=1.5e-17 Score=160.93 Aligned_cols=348 Identities=10% Similarity=-0.026 Sum_probs=193.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCC--CCCceEEeCCCCCCCcccccccHHHHHHHHHHh
Q 012474 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSN--YPHFSFNSISESLWESEVSTENAISLLTVLNDK 92 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (463)
.||++.+.++.||+.|. .|+++|.++|++|+|++..... .... ..++.+..++- ..+.+.+..+...
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~~~~~~~~g~gg~~-m~~~g~~~~~~~~~l~v---------~G~~~~l~~~~~~ 74 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEHYPNARFIGVAGPR-MAAEGCEVLYSMEELSV---------MGLREVLGRLGRL 74 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhcCCCcEEEEEccHH-HHhCcCccccChHHhhh---------ccHHHHHHHHHHH
Confidence 47888898999999999 9999999999999999874211 0010 01233333321 1111122211111
Q ss_pred cCchHHHHHHHHHhCCCCCCCceEEEeCCc-hhh--HHHHHHHcCCCeEEEeCchhHHHHHHHHHHHHHHhccccccccC
Q 012474 93 CVVPFQDCLAKLISNGDQEEPVTCLITDAI-WHF--AQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYLAEQVSF 169 (463)
Q Consensus 93 ~~~~l~~~l~~l~~~~~~~~~pD~VI~D~~-~~~--~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 169 (463)
...+....+.+.+ .+||+||.-.. ++. ....|+.+|||++.+.+- ..+ .+. .
T Consensus 75 -~~~~~~~~~~l~~-----~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~P-~~w-------------aw~-~---- 129 (385)
T TIGR00215 75 -LKIRKEVVQLAKQ-----AKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYISP-QVW-------------AWR-K---- 129 (385)
T ss_pred -HHHHHHHHHHHHh-----cCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeCC-cHh-------------hcC-c----
Confidence 1122233333443 78999996433 222 233788899999875421 110 000 0
Q ss_pred CCCCCCccccCCCCCCCcCCCCccccCCCchHHHHHHHHHhhccCCceEEEcchhhhhHHHHHHhhhcCCCCccccc-cc
Q 012474 170 SSDSQLEKPVTELPPLRVKDIPIIVTHDTRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELTRLHKDFPIPMFPIG-PF 248 (463)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~v~~vG-pl 248 (463)
++++.+.+ .+|.+++.+..+.+. . ++ .+.+..+|| |+
T Consensus 130 --------------------------~~~r~l~~----------~~d~v~~~~~~e~~~--~---~~-~g~~~~~vGnPv 167 (385)
T TIGR00215 130 --------------------------WRAKKIEK----------ATDFLLAILPFEKAF--Y---QK-KNVPCRFVGHPL 167 (385)
T ss_pred --------------------------chHHHHHH----------HHhHhhccCCCcHHH--H---Hh-cCCCEEEECCch
Confidence 01111111 122233332222221 1 11 234566788 43
Q ss_pred cccccccCCCcccccchhccccccCCCCeEEEEecCCcccCCHHHHHHHHHHHhcC-----CCceEEEEcCCCCCCCccC
Q 012474 249 HKYCLASSSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANS-----RVPFLWVVRPGLVPGVEWL 323 (463)
Q Consensus 249 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~v~~~~~~~~~~~~~~ 323 (463)
..... ...+...+..+-+.-.+++++|.+..||....-......++++++.+ +.++++...... +
T Consensus 168 ~~~~~----~~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~--~---- 237 (385)
T TIGR00215 168 LDAIP----LYKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFK--R---- 237 (385)
T ss_pred hhhcc----ccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCch--h----
Confidence 22211 00011111222222233567888888888762233444555544432 234444443321 0
Q ss_pred CCCchhHHHHhcCCCceeecc-ChhhhhcCCCCcccccccChhhHHHHHhhCCceecc----cccc---------chhhh
Q 012474 324 EPLPKGFLEMLDGRGHIVKWA-PQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQ----PCFG---------DQLVN 389 (463)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~v-pq~~lL~~~~~~~~I~hgG~~s~~eal~~GvP~l~~----P~~~---------DQ~~n 389 (463)
.+.-+.+.+....+..+.-+. ....++..+|+ +|+-+|..|+ |++++|+|+|++ |+.. +|..|
T Consensus 238 ~~~~~~~~~~~~~~~~v~~~~~~~~~~l~aADl--~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~ 314 (385)
T TIGR00215 238 RLQFEQIKAEYGPDLQLHLIDGDARKAMFAADA--ALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISL 314 (385)
T ss_pred HHHHHHHHHHhCCCCcEEEECchHHHHHHhCCE--EeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeec
Confidence 000011212221122333222 23568999999 9999999888 999999999999 7642 38889
Q ss_pred HHHHHHHhhceeecCC-ccCHHHHHHHHHHHhccc----h-HHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHH
Q 012474 390 ARYVSHVWRVGLHLER-KFERREIETAIRRVTVEA----E-GQEMRERIMHLKEKLELSLLEAGSSYQSLERLVD 458 (463)
Q Consensus 390 a~rv~~~~G~G~~l~~-~~t~~~l~~~i~~~l~~~----~-~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~ 458 (463)
+..+..+ ++...+.. .+|++.|.+.+.++|.|+ + .+.+++..+++++.+. +.|.+.++.+.+++
T Consensus 315 ~nil~~~-~~~pel~q~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~a~~i~~ 384 (385)
T TIGR00215 315 PNILANR-LLVPELLQEECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELRQRIY----CNADSERAAQAVLE 384 (385)
T ss_pred cHHhcCC-ccchhhcCCCCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHhc----CCCHHHHHHHHHhh
Confidence 9999996 99999887 899999999999999994 3 4455666666666554 67778888887765
No 37
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.68 E-value=4.9e-15 Score=144.41 Aligned_cols=105 Identities=13% Similarity=0.171 Sum_probs=68.8
Q ss_pred hhhhcCCCCcccccccChhhHHHHHhhCCceecccccc--------chhhh-----HHHHHHHhhceeecCC-ccCHHHH
Q 012474 347 QEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFG--------DQLVN-----ARYVSHVWRVGLHLER-KFERREI 412 (463)
Q Consensus 347 ~~lL~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~--------DQ~~n-----a~rv~~~~G~G~~l~~-~~t~~~l 412 (463)
..++..+++ +|+.+|.+++ ||+++|+|+|++|... +|..| +..+... +++..+.. ..+++.+
T Consensus 256 ~~~~~~aDl--~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~l 331 (380)
T PRK00025 256 REAMAAADA--ALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGR-ELVPELLQEEATPEKL 331 (380)
T ss_pred HHHHHhCCE--EEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCC-CcchhhcCCCCCHHHH
Confidence 678999999 9999999888 9999999999985331 23222 2333442 44444444 6899999
Q ss_pred HHHHHHHhccch-HHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 012474 413 ETAIRRVTVEAE-GQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHI 460 (463)
Q Consensus 413 ~~~i~~~l~~~~-~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 460 (463)
.+.+.++++|++ .+.|+++++.+.+.+ ..+...+.++.+.+.+
T Consensus 332 ~~~i~~ll~~~~~~~~~~~~~~~~~~~~-----~~~a~~~~~~~i~~~~ 375 (380)
T PRK00025 332 ARALLPLLADGARRQALLEGFTELHQQL-----RCGADERAAQAVLELL 375 (380)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHh
Confidence 999999999932 233333433333332 3455666666665544
No 38
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.68 E-value=3.1e-15 Score=145.66 Aligned_cols=163 Identities=14% Similarity=0.176 Sum_probs=109.0
Q ss_pred CCeEEEEecCCcccCCHHHHHHHHHHHhcC-CCceEEEEcCCCCCCCccCCCCchhHHH---HhcCCCceeeccCh-hhh
Q 012474 275 AKSVMYVSFGSIVVVNVTEFLEIAWGLANS-RVPFLWVVRPGLVPGVEWLEPLPKGFLE---MLDGRGHIVKWAPQ-QEV 349 (463)
Q Consensus 275 ~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~vpq-~~l 349 (463)
++++|++..|+.... ..+..+++++.+. +.+++++.+.+. . +-+.+.+ ...+|+.+.+|+++ .++
T Consensus 201 ~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~~----~----~~~~l~~~~~~~~~~v~~~g~~~~~~~l 270 (380)
T PRK13609 201 NKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKNE----A----LKQSLEDLQETNPDALKVFGYVENIDEL 270 (380)
T ss_pred CCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCCH----H----HHHHHHHHHhcCCCcEEEEechhhHHHH
Confidence 456788877877542 2345566666554 356666655321 0 1122222 22357788899987 689
Q ss_pred hcCCCCcccccccChhhHHHHHhhCCceecc-ccccchhhhHHHHHHHhhceeecCCccCHHHHHHHHHHHhccchHHHH
Q 012474 350 LAHPAVGGFWTHNGWNSTLESICEGVPMICQ-PCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVEAEGQEM 428 (463)
Q Consensus 350 L~~~~~~~~I~hgG~~s~~eal~~GvP~l~~-P~~~DQ~~na~rv~~~~G~G~~l~~~~t~~~l~~~i~~~l~~~~~~~~ 428 (463)
+..+++ +|+.+|..|+.||+++|+|+|+. |..+.|..|+..+++. |+|+.. .+.+++.++|.++++| ++.
T Consensus 271 ~~~aD~--~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~-G~~~~~---~~~~~l~~~i~~ll~~---~~~ 341 (380)
T PRK13609 271 FRVTSC--MITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERK-GAAVVI---RDDEEVFAKTEALLQD---DMK 341 (380)
T ss_pred HHhccE--EEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhC-CcEEEE---CCHHHHHHHHHHHHCC---HHH
Confidence 999999 99999988999999999999985 6677788899999995 998854 4679999999999998 443
Q ss_pred HHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 012474 429 RERIMHLKEKLELSLLEAGSSYQSLERLVDHI 460 (463)
Q Consensus 429 ~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 460 (463)
+++ |++..++. ....+.++.++.+++.+
T Consensus 342 ~~~---m~~~~~~~-~~~~s~~~i~~~i~~~~ 369 (380)
T PRK13609 342 LLQ---MKEAMKSL-YLPEPADHIVDDILAEN 369 (380)
T ss_pred HHH---HHHHHHHh-CCCchHHHHHHHHHHhh
Confidence 322 22222211 12335566666665554
No 39
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.66 E-value=3e-15 Score=138.22 Aligned_cols=104 Identities=17% Similarity=0.153 Sum_probs=77.5
Q ss_pred CeEEEEecCCcccCCHHHHHHHHHHHhcC--CCceEEEEcCCCCCCCccCCCCchhHHHH--hcCCCceeeccCh-hhhh
Q 012474 276 KSVMYVSFGSIVVVNVTEFLEIAWGLANS--RVPFLWVVRPGLVPGVEWLEPLPKGFLEM--LDGRGHIVKWAPQ-QEVL 350 (463)
Q Consensus 276 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~vpq-~~lL 350 (463)
.+.|++++|.... ......+++++.+. +.++.++++... ...+.+.+. ...|+.+..|+++ .+++
T Consensus 170 ~~~iLi~~GG~d~--~~~~~~~l~~l~~~~~~~~i~vv~G~~~--------~~~~~l~~~~~~~~~i~~~~~~~~m~~lm 239 (279)
T TIGR03590 170 LRRVLVSFGGADP--DNLTLKLLSALAESQINISITLVTGSSN--------PNLDELKKFAKEYPNIILFIDVENMAELM 239 (279)
T ss_pred cCeEEEEeCCcCC--cCHHHHHHHHHhccccCceEEEEECCCC--------cCHHHHHHHHHhCCCEEEEeCHHHHHHHH
Confidence 3578999986553 22445566776654 356777776542 122333332 2357788899998 6899
Q ss_pred cCCCCcccccccChhhHHHHHhhCCceeccccccchhhhHHH
Q 012474 351 AHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARY 392 (463)
Q Consensus 351 ~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~~na~r 392 (463)
..+++ +||+|| +|++|+++.|+|+|++|...+|..||+.
T Consensus 240 ~~aDl--~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 240 NEADL--AIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred HHCCE--EEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 99999 999999 9999999999999999999999999975
No 40
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.60 E-value=6.4e-13 Score=128.79 Aligned_cols=351 Identities=13% Similarity=0.097 Sum_probs=191.9
Q ss_pred CCccCHHHHHHHHHHHHh--CCCeEE---EEeCCCCCC-CCCCCCCceEEeCCCCCCCcccccccHHHHHHHHHH-hcCc
Q 012474 23 PLQGHINPMLQLASILYS--KGFSIT---IIHTNFNSP-NPSNYPHFSFNSISESLWESEVSTENAISLLTVLND-KCVV 95 (463)
Q Consensus 23 ~~~GH~~p~l~La~~L~~--rGh~Vt---~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 95 (463)
-+.|-=.-.+.||++|.+ .|++|. ++++....+ ......| .+..+|. +..........+..... ....
T Consensus 5 nghged~~a~ai~~~l~~~~~~~~v~~~p~vG~~~~~e~~~ip~~g-~~~~~~s----gg~~~~~~~~~~~~~~~gl~~~ 79 (396)
T TIGR03492 5 NGHGEDLIAARIAKALLQLSPDLNLEALPLVGEGRAYQNLGIPIIG-PTKELPS----GGFSYQSLRGLLRDLRAGLVGL 79 (396)
T ss_pred CCchHHHHHHHHHHHHHhhCCCCCeEEeCcccCCHHHhhCCCceeC-CCCCCCC----CCccCCCHHHHHHHHHhhHHHH
Confidence 455666778999999998 599999 998863321 1111123 4444442 22222233333333333 2222
Q ss_pred hHHH--HHHHHHhCCCCCCCceEEEeCCchhhHHHHHHHcCCCeEEEeCchhHHHHHHHHHHHHHHhccccccccCCCCC
Q 012474 96 PFQD--CLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYLAEQVSFSSDS 173 (463)
Q Consensus 96 ~l~~--~l~~l~~~~~~~~~pD~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 173 (463)
..+. .++++. .+||+||.-.-+. ...+|...|+|++++.+.-.. .+.....++ ...
T Consensus 80 ~~~~~~~~~~~~------~~p~~v~~~Gg~v-~~~aA~~~~~p~~~~~~~esn--------------~~~~~~~~~-~~~ 137 (396)
T TIGR03492 80 TLGQWRALRKWA------KKGDLIVAVGDIV-PLLFAWLSGKPYAFVGTAKSD--------------YYWESGPRR-SPS 137 (396)
T ss_pred HHHHHHHHHHHh------hcCCEEEEECcHH-HHHHHHHcCCCceEEEeeccc--------------eeecCCCCC-ccc
Confidence 2222 344442 2699999876555 888899999999997665111 111111111 112
Q ss_pred CCccccCCCCCCCcCCCCccccCCCchHHHHHHHHHhhccCCceEEEcchhhhhHHHHHHhhhcCCCCccccc-cccccc
Q 012474 174 QLEKPVTELPPLRVKDIPIIVTHDTRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELTRLHKDFPIPMFPIG-PFHKYC 252 (463)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~v~~vG-pl~~~~ 252 (463)
++..++++.. ...+ . +..-..+.++.+++.+...-+. +++ .+.++.+|| |+....
T Consensus 138 ~~~~~~~G~~--------------~~p~-e---~n~l~~~~a~~v~~~~~~t~~~-----l~~-~g~k~~~vGnPv~d~l 193 (396)
T TIGR03492 138 DEYHRLEGSL--------------YLPW-E---RWLMRSRRCLAVFVRDRLTARD-----LRR-QGVRASYLGNPMMDGL 193 (396)
T ss_pred hhhhccCCCc--------------cCHH-H---HHHhhchhhCEEeCCCHHHHHH-----HHH-CCCeEEEeCcCHHhcC
Confidence 2223333321 0111 1 0111123445555444222221 222 245799999 554432
Q ss_pred cccCCCcccccchhccccccCCCCeEEEEecCCcccCCHHHHHHHHHHHhcC----CCceEEEEcCCCCCCCccCCCCch
Q 012474 253 LASSSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANS----RVPFLWVVRPGLVPGVEWLEPLPK 328 (463)
Q Consensus 253 ~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~----~~~~v~~~~~~~~~~~~~~~~~~~ 328 (463)
.. ... .-+ .+++++|.+-.||....-...+..++++++.+ +..+++.+.+.. ..+
T Consensus 194 ~~-------~~~---~~l--~~~~~~lllLpGSR~ae~~~~lp~~l~al~~L~~~~~~~~v~~~~~~~---------~~~ 252 (396)
T TIGR03492 194 EP-------PER---KPL--LTGRFRIALLPGSRPPEAYRNLKLLLRALEALPDSQPFVFLAAIVPSL---------SLE 252 (396)
T ss_pred cc-------ccc---ccc--CCCCCEEEEECCCCHHHHHccHHHHHHHHHHHhhCCCeEEEEEeCCCC---------CHH
Confidence 21 000 011 22457899999998663333444555555543 456777764322 111
Q ss_pred hHHHHhc-------------------CCCceeeccCh-hhhhcCCCCcccccccChhhHHHHHhhCCceeccccccchhh
Q 012474 329 GFLEMLD-------------------GRGHIVKWAPQ-QEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLV 388 (463)
Q Consensus 329 ~~~~~~~-------------------~~~~~~~~vpq-~~lL~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~~ 388 (463)
.+.+... .++.+..|..+ .+++..+++ +|+-+|..| .|+...|+|+|++|.-..|.
T Consensus 253 ~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~ADl--vI~rSGt~T-~E~a~lg~P~Ilip~~~~q~- 328 (396)
T TIGR03492 253 KLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLGRGAFAEILHWADL--GIAMAGTAT-EQAVGLGKPVIQLPGKGPQF- 328 (396)
T ss_pred HHHHHHHhcCceecCCccccchhhccCceEEEechHhHHHHHHhCCE--EEECcCHHH-HHHHHhCCCEEEEeCCCCHH-
Confidence 1211111 12344455544 779999999 999999777 99999999999999877886
Q ss_pred hHHHHHHHh----hceeecCCccCHHHHHHHHHHHhccchHHHHHHHHH-HHHHHHHHHHhhCCChHHHHHHHHH
Q 012474 389 NARYVSHVW----RVGLHLERKFERREIETAIRRVTVEAEGQEMRERIM-HLKEKLELSLLEAGSSYQSLERLVD 458 (463)
Q Consensus 389 na~rv~~~~----G~G~~l~~~~t~~~l~~~i~~~l~~~~~~~~~~~a~-~~~~~~~~~~~~~g~~~~~~~~~~~ 458 (463)
||...++ . |.+..+.. .+.+.|.+++.+++.| ++.+++.. ..+..+. ..+.+.+.++.+.+
T Consensus 329 na~~~~~-~~~l~g~~~~l~~-~~~~~l~~~l~~ll~d---~~~~~~~~~~~~~~lg----~~~a~~~ia~~i~~ 394 (396)
T TIGR03492 329 TYGFAEA-QSRLLGGSVFLAS-KNPEQAAQVVRQLLAD---PELLERCRRNGQERMG----PPGASARIAESILK 394 (396)
T ss_pred HHHHHHh-hHhhcCCEEecCC-CCHHHHHHHHHHHHcC---HHHHHHHHHHHHHhcC----CCCHHHHHHHHHHH
Confidence 9877666 3 66776665 5669999999999998 44443333 2223232 34455555554444
No 41
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.59 E-value=2.2e-13 Score=132.71 Aligned_cols=164 Identities=19% Similarity=0.216 Sum_probs=109.7
Q ss_pred CCeEEEEecCCcccCCHHHHHHHHHHH-hcC-CCceEEEEcCCCCCCCccCCCCchhHHHHh--cCCCceeeccCh-hhh
Q 012474 275 AKSVMYVSFGSIVVVNVTEFLEIAWGL-ANS-RVPFLWVVRPGLVPGVEWLEPLPKGFLEML--DGRGHIVKWAPQ-QEV 349 (463)
Q Consensus 275 ~~~~v~vs~Gs~~~~~~~~~~~~~~al-~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~vpq-~~l 349 (463)
++++|+++.|+.+. ...+..+++++ +.. +.+++++++.+. .+-+.+.+.. .+++.+.+|+++ .++
T Consensus 201 ~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~~--------~l~~~l~~~~~~~~~v~~~G~~~~~~~~ 270 (391)
T PRK13608 201 DKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKSK--------ELKRSLTAKFKSNENVLILGYTKHMNEW 270 (391)
T ss_pred CCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCCH--------HHHHHHHHHhccCCCeEEEeccchHHHH
Confidence 56788888888763 23344455553 322 345555554321 0112222222 256778899976 679
Q ss_pred hcCCCCcccccccChhhHHHHHhhCCceecc-ccccchhhhHHHHHHHhhceeecCCccCHHHHHHHHHHHhccchHHHH
Q 012474 350 LAHPAVGGFWTHNGWNSTLESICEGVPMICQ-PCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVEAEGQEM 428 (463)
Q Consensus 350 L~~~~~~~~I~hgG~~s~~eal~~GvP~l~~-P~~~DQ~~na~rv~~~~G~G~~l~~~~t~~~l~~~i~~~l~~~~~~~~ 428 (463)
+..+++ +|+.+|..|+.||+++|+|+|++ |..++|..|+..+++. |+|+... +.+++.++|.++++|+ +.
T Consensus 271 ~~~aDl--~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~-G~g~~~~---~~~~l~~~i~~ll~~~---~~ 341 (391)
T PRK13608 271 MASSQL--MITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEK-GFGKIAD---TPEEAIKIVASLTNGN---EQ 341 (391)
T ss_pred HHhhhE--EEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhC-CcEEEeC---CHHHHHHHHHHHhcCH---HH
Confidence 999999 99998888999999999999998 6667778899999995 9998654 7889999999999883 22
Q ss_pred HHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 012474 429 RERIMHLKEKLELSLLEAGSSYQSLERLVDHIL 461 (463)
Q Consensus 429 ~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 461 (463)
+ ++|++..++. ....+.++.++.+.+.++
T Consensus 342 ~---~~m~~~~~~~-~~~~s~~~i~~~l~~l~~ 370 (391)
T PRK13608 342 L---TNMISTMEQD-KIKYATQTICRDLLDLIG 370 (391)
T ss_pred H---HHHHHHHHHh-cCCCCHHHHHHHHHHHhh
Confidence 2 2333333321 123456666666666554
No 42
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.57 E-value=3.6e-17 Score=139.71 Aligned_cols=135 Identities=20% Similarity=0.250 Sum_probs=96.2
Q ss_pred EEEEecCCcccCCH-HHHHHHHHHHhcC--CCceEEEEcCCCCCCCccCCCCchhHHHHhcCCCceeeccC-hhhhhcCC
Q 012474 278 VMYVSFGSIVVVNV-TEFLEIAWGLANS--RVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIVKWAP-QQEVLAHP 353 (463)
Q Consensus 278 ~v~vs~Gs~~~~~~-~~~~~~~~al~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp-q~~lL~~~ 353 (463)
+|+|+.||.+...- ..+..+...+... ..++++.++... .......+ +....++.+.+|++ ..+++..+
T Consensus 1 tilv~gGs~g~~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~------~~~~~~~~-~~~~~~v~~~~~~~~m~~~m~~a 73 (167)
T PF04101_consen 1 TILVTGGSQGARDLNRLVLKILELLAEKHKNIQVIVQTGKNN------YEELKIKV-ENFNPNVKVFGFVDNMAELMAAA 73 (167)
T ss_dssp -EEEEETTTSHHHHHCCCCCHHHHHHHHHHHCCCCCCCTTCE------CHHHCCCH-CCTTCCCEEECSSSSHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHhhcCCCcEEEEEECCCc------HHHHHHHH-hccCCcEEEEechhhHHHHHHHc
Confidence 58999998775211 1122333333332 467888887642 11111111 11125678889999 58899999
Q ss_pred CCcccccccChhhHHHHHhhCCceecccccc----chhhhHHHHHHHhhceeecCC-ccCHHHHHHHHHHHhcc
Q 012474 354 AVGGFWTHNGWNSTLESICEGVPMICQPCFG----DQLVNARYVSHVWRVGLHLER-KFERREIETAIRRVTVE 422 (463)
Q Consensus 354 ~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~----DQ~~na~rv~~~~G~G~~l~~-~~t~~~l~~~i~~~l~~ 422 (463)
++ +|||||.||++|++++|+|+|++|... +|..||..+++. |+|..+.. ..+.+.|.++|.+++.+
T Consensus 74 Dl--vIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~-g~~~~~~~~~~~~~~L~~~i~~l~~~ 144 (167)
T PF04101_consen 74 DL--VISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKK-GAAIMLDESELNPEELAEAIEELLSD 144 (167)
T ss_dssp SE--EEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHC-CCCCCSECCC-SCCCHHHHHHCHCCC
T ss_pred CE--EEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHc-CCccccCcccCCHHHHHHHHHHHHcC
Confidence 99 999999999999999999999999988 999999999995 99999988 77899999999999998
No 43
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.50 E-value=1.1e-11 Score=120.61 Aligned_cols=135 Identities=13% Similarity=0.077 Sum_probs=93.0
Q ss_pred CCCeEEEEecCCcccCCHHH-HHHHHHHHh-----cCCCceEEEEcCCCCCCCccCCCCchhHHHH-hcCCCceeeccCh
Q 012474 274 AAKSVMYVSFGSIVVVNVTE-FLEIAWGLA-----NSRVPFLWVVRPGLVPGVEWLEPLPKGFLEM-LDGRGHIVKWAPQ 346 (463)
Q Consensus 274 ~~~~~v~vs~Gs~~~~~~~~-~~~~~~al~-----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~vpq 346 (463)
+++++|++..|+...-.... ++.+...+. ..+.+++++++.+. + +-+.+.+. ...++.+.+|+++
T Consensus 204 ~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~----~----~~~~L~~~~~~~~v~~~G~~~~ 275 (382)
T PLN02605 204 EDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVVICGRNK----K----LQSKLESRDWKIPVKVRGFVTN 275 (382)
T ss_pred CCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEEEECCCH----H----HHHHHHhhcccCCeEEEecccc
Confidence 35667777776655433222 233322221 12345566665431 0 11222211 1245678899997
Q ss_pred -hhhhcCCCCcccccccChhhHHHHHhhCCceeccccccchh-hhHHHHHHHhhceeecCCccCHHHHHHHHHHHhcc
Q 012474 347 -QEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQL-VNARYVSHVWRVGLHLERKFERREIETAIRRVTVE 422 (463)
Q Consensus 347 -~~lL~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~-~na~rv~~~~G~G~~l~~~~t~~~l~~~i~~~l~~ 422 (463)
.+++..+|+ +|+.+|.+|+.||+++|+|+|+.+....|. .|+..+.+. |.|... -+++++.++|.+++.|
T Consensus 276 ~~~l~~aaDv--~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~-g~g~~~---~~~~~la~~i~~ll~~ 347 (382)
T PLN02605 276 MEEWMGACDC--IITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDN-GFGAFS---ESPKEIARIVAEWFGD 347 (382)
T ss_pred HHHHHHhCCE--EEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhC-Cceeec---CCHHHHHHHHHHHHcC
Confidence 789999999 999999999999999999999998776675 699999985 999864 5789999999999987
No 44
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.46 E-value=1.6e-10 Score=111.57 Aligned_cols=112 Identities=19% Similarity=0.212 Sum_probs=79.0
Q ss_pred hcCCCceeeccChh---hhhcCCCCcccccccC----hhhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCCc
Q 012474 334 LDGRGHIVKWAPQQ---EVLAHPAVGGFWTHNG----WNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERK 406 (463)
Q Consensus 334 ~~~~~~~~~~vpq~---~lL~~~~~~~~I~hgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~ 406 (463)
..+|+.+.+|+++. +++..+++ +|+.+. .+++.||+++|+|+|+.+.. .+...+++. +.|...+.
T Consensus 245 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~----~~~~~i~~~-~~g~~~~~- 316 (364)
T cd03814 245 RYPNVHFLGFLDGEELAAAYASADV--FVFPSRTETFGLVVLEAMASGLPVVAPDAG----GPADIVTDG-ENGLLVEP- 316 (364)
T ss_pred cCCcEEEEeccCHHHHHHHHHhCCE--EEECcccccCCcHHHHHHHcCCCEEEcCCC----CchhhhcCC-cceEEcCC-
Confidence 34677888999864 47889998 886654 37899999999999987754 356667774 88988775
Q ss_pred cCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 012474 407 FERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHI 460 (463)
Q Consensus 407 ~t~~~l~~~i~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 460 (463)
-+.+++.++|.+++.|+ ..+++.. +..++.. +..+.++..+++++.+
T Consensus 317 ~~~~~l~~~i~~l~~~~---~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~ 363 (364)
T cd03814 317 GDAEAFAAALAALLADP---ELRRRMA---ARARAEA-ERRSWEAFLDNLLEAY 363 (364)
T ss_pred CCHHHHHHHHHHHHcCH---HHHHHHH---HHHHHHH-hhcCHHHHHHHHHHhh
Confidence 67888999999999983 3332222 2222111 2456677777777654
No 45
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.44 E-value=3.4e-10 Score=113.17 Aligned_cols=154 Identities=12% Similarity=0.087 Sum_probs=94.5
Q ss_pred eEEEEecCCcccCCHHHHHHHHHHHhcCC-CceEEEEcCCCCCCCccCCCCchhHHHHh-cCCCceeeccCh---hhhhc
Q 012474 277 SVMYVSFGSIVVVNVTEFLEIAWGLANSR-VPFLWVVRPGLVPGVEWLEPLPKGFLEML-DGRGHIVKWAPQ---QEVLA 351 (463)
Q Consensus 277 ~~v~vs~Gs~~~~~~~~~~~~~~al~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~vpq---~~lL~ 351 (463)
..+++..|+.. ....+..++++++..+ .++++ ++.+. ..+.+.+.. ..++.+.+|+++ ..++.
T Consensus 263 ~~~i~~vGrl~--~~K~~~~li~a~~~~~~~~l~i-vG~G~---------~~~~l~~~~~~~~V~f~G~v~~~ev~~~~~ 330 (465)
T PLN02871 263 KPLIVYVGRLG--AEKNLDFLKRVMERLPGARLAF-VGDGP---------YREELEKMFAGTPTVFTGMLQGDELSQAYA 330 (465)
T ss_pred CeEEEEeCCCc--hhhhHHHHHHHHHhCCCcEEEE-EeCCh---------HHHHHHHHhccCCeEEeccCCHHHHHHHHH
Confidence 34556668765 3445666777777654 44444 33321 112332222 246777899985 44788
Q ss_pred CCCCcccccccC----hhhHHHHHhhCCceeccccccchhhhHHHHHH---HhhceeecCCccCHHHHHHHHHHHhccch
Q 012474 352 HPAVGGFWTHNG----WNSTLESICEGVPMICQPCFGDQLVNARYVSH---VWRVGLHLERKFERREIETAIRRVTVEAE 424 (463)
Q Consensus 352 ~~~~~~~I~hgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~---~~G~G~~l~~~~t~~~l~~~i~~~l~~~~ 424 (463)
.+++ +|.-.. ..++.||+++|+|+|+.... .....++. . +.|...+. -+.+++.++|.++++|++
T Consensus 331 ~aDv--~V~pS~~E~~g~~vlEAmA~G~PVI~s~~g----g~~eiv~~~~~~-~~G~lv~~-~d~~~la~~i~~ll~~~~ 402 (465)
T PLN02871 331 SGDV--FVMPSESETLGFVVLEAMASGVPVVAARAG----GIPDIIPPDQEG-KTGFLYTP-GDVDDCVEKLETLLADPE 402 (465)
T ss_pred HCCE--EEECCcccccCcHHHHHHHcCCCEEEcCCC----CcHhhhhcCCCC-CceEEeCC-CCHHHHHHHHHHHHhCHH
Confidence 8888 884432 35789999999999987643 23444444 4 77887775 678999999999999842
Q ss_pred -HHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHH
Q 012474 425 -GQEMRERIMHLKEKLELSLLEAGSSYQSLERLVD 458 (463)
Q Consensus 425 -~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~ 458 (463)
...+.+++++..+ .-+-+..++++.+
T Consensus 403 ~~~~~~~~a~~~~~--------~fsw~~~a~~l~~ 429 (465)
T PLN02871 403 LRERMGAAAREEVE--------KWDWRAATRKLRN 429 (465)
T ss_pred HHHHHHHHHHHHHH--------hCCHHHHHHHHHH
Confidence 2334444443322 2344555555554
No 46
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.35 E-value=9.4e-11 Score=102.46 Aligned_cols=145 Identities=14% Similarity=0.169 Sum_probs=107.4
Q ss_pred CeEEEEecCCcccCCHHHHHHHHHHHhcCCCceEEEEcCCCCCCCccCCCCchhHHHHhc--CCCceeeccCh-hhhhcC
Q 012474 276 KSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLD--GRGHIVKWAPQ-QEVLAH 352 (463)
Q Consensus 276 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~vpq-~~lL~~ 352 (463)
+.-|+|++|..- +.....+++..+.+.++.+-++++.. .+..++..++.. +|+.+...... ..++..
T Consensus 158 ~r~ilI~lGGsD--pk~lt~kvl~~L~~~~~nl~iV~gs~--------~p~l~~l~k~~~~~~~i~~~~~~~dma~LMke 227 (318)
T COG3980 158 KRDILITLGGSD--PKNLTLKVLAELEQKNVNLHIVVGSS--------NPTLKNLRKRAEKYPNINLYIDTNDMAELMKE 227 (318)
T ss_pred hheEEEEccCCC--hhhhHHHHHHHhhccCeeEEEEecCC--------CcchhHHHHHHhhCCCeeeEecchhHHHHHHh
Confidence 456999998743 34456678888888776766777632 123344443332 44445444443 569999
Q ss_pred CCCcccccccChhhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCCccCHHHHHHHHHHHhccchHHHHHHHH
Q 012474 353 PAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVEAEGQEMRERI 432 (463)
Q Consensus 353 ~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~t~~~l~~~i~~~l~~~~~~~~~~~a 432 (463)
+++ .|+-|| .|++|++.-|+|.+++|+.-.|.-.|...+. +|+-+.+...+++..+...+.++..| ...|.+.
T Consensus 228 ~d~--aI~AaG-stlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~-lg~~~~l~~~l~~~~~~~~~~~i~~d---~~~rk~l 300 (318)
T COG3980 228 ADL--AISAAG-STLYEALLLGVPSLVLPLAENQIATAKEFEA-LGIIKQLGYHLKDLAKDYEILQIQKD---YARRKNL 300 (318)
T ss_pred cch--heeccc-hHHHHHHHhcCCceEEeeeccHHHHHHHHHh-cCchhhccCCCchHHHHHHHHHhhhC---HHHhhhh
Confidence 999 999988 5999999999999999999999999999999 69998887678888888999999998 5555554
Q ss_pred HHHHH
Q 012474 433 MHLKE 437 (463)
Q Consensus 433 ~~~~~ 437 (463)
....+
T Consensus 301 ~~~~~ 305 (318)
T COG3980 301 SFGSK 305 (318)
T ss_pred hhccc
Confidence 44333
No 47
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.34 E-value=1.4e-09 Score=105.63 Aligned_cols=113 Identities=14% Similarity=0.082 Sum_probs=79.6
Q ss_pred CCCceeeccCh-hhhhcCCCCccccc----ccChhhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCCccCHH
Q 012474 336 GRGHIVKWAPQ-QEVLAHPAVGGFWT----HNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERR 410 (463)
Q Consensus 336 ~~~~~~~~vpq-~~lL~~~~~~~~I~----hgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~t~~ 410 (463)
+++.+.++.++ .+++..+++ +|. -|.-.++.||+++|+|+|+... ...+..+++. ..|...+. -+.+
T Consensus 253 ~~v~~~g~~~~~~~~~~~~d~--~v~ps~~E~~~~~~~EAma~g~PvI~s~~----~~~~e~i~~~-~~G~~~~~-~~~~ 324 (371)
T cd04962 253 DDVLFLGKQDHVEELLSIADL--FLLPSEKESFGLAALEAMACGVPVVASNA----GGIPEVVKHG-ETGFLVDV-GDVE 324 (371)
T ss_pred ceEEEecCcccHHHHHHhcCE--EEeCCCcCCCccHHHHHHHcCCCEEEeCC----CCchhhhcCC-CceEEcCC-CCHH
Confidence 56777788776 778988888 772 2334699999999999998543 4456667663 67776664 6889
Q ss_pred HHHHHHHHHhccch-HHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhcC
Q 012474 411 EIETAIRRVTVEAE-GQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILSF 463 (463)
Q Consensus 411 ~l~~~i~~~l~~~~-~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 463 (463)
++.++|.++++|++ ...+++++++. ..+.-+.+..++++.+.++++
T Consensus 325 ~l~~~i~~l~~~~~~~~~~~~~~~~~-------~~~~fs~~~~~~~~~~~y~~~ 371 (371)
T cd04962 325 AMAEYALSLLEDDELWQEFSRAARNR-------AAERFDSERIVPQYEALYRRL 371 (371)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHH-------HHHhCCHHHHHHHHHHHHHhC
Confidence 99999999998832 23344444433 124556788888888887653
No 48
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.31 E-value=2.9e-13 Score=111.84 Aligned_cols=128 Identities=18% Similarity=0.187 Sum_probs=79.3
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCC--CCCcccccccHHHHHHH--HHHh
Q 012474 17 VILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSNYPHFSFNSISES--LWESEVSTENAISLLTV--LNDK 92 (463)
Q Consensus 17 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~--~~~~ 92 (463)
|+|.+.|+.||++|+++||++|++|||+|++++++....... ..|++|++++.. ..........+...... ....
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~~~~~v~-~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRRGHEVRLATPPDFRERVE-AAGLEFVPIPGDSRLPRSLEPLANLRRLARLIRGLEE 79 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEETGGGHHHHH-HTT-EEEESSSCGGGGHHHHHHHHHHCHHHHHHHHHH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhccCCeEEEeecccceeccc-ccCceEEEecCCcCcCcccchhhhhhhHHHHhhhhhH
Confidence 789999999999999999999999999999999976554443 379999999865 11100011111111111 1111
Q ss_pred cCchHHHHHHHHH-hCCCCCCCceEEEeCCchhhHHHHHHHcCCCeEEEeCchhH
Q 012474 93 CVVPFQDCLAKLI-SNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSIS 146 (463)
Q Consensus 93 ~~~~l~~~l~~l~-~~~~~~~~pD~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~ 146 (463)
+...+.+...+.. ...+ ...+|+++.+.....+..+|+++|||++.....|..
T Consensus 80 ~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~ 133 (139)
T PF03033_consen 80 AMRILARFRPDLVVAAGG-YVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWF 133 (139)
T ss_dssp HHHHHHHHHHCCCCHCTT-TTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGG
T ss_pred HHHHhhccCcchhhhccC-cccchHHHhhhhcCccceeEhhhCchHHHHhhCCcC
Confidence 1111211111111 1111 135788888988888999999999999998887654
No 49
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.30 E-value=5.6e-09 Score=102.35 Aligned_cols=80 Identities=16% Similarity=0.180 Sum_probs=60.5
Q ss_pred CCCceeeccChhh---hhcCCCCccccc---ccCh-hhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCCccC
Q 012474 336 GRGHIVKWAPQQE---VLAHPAVGGFWT---HNGW-NSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFE 408 (463)
Q Consensus 336 ~~~~~~~~vpq~~---lL~~~~~~~~I~---hgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~t 408 (463)
+++.+.+++|+.+ +|..+++ +|. +.|. .++.||+++|+|+|+.. .......+... ..|..++. -+
T Consensus 281 ~~V~f~G~v~~~~~~~~l~~adv--~v~~s~~e~~~~~llEAmA~G~PVIas~----~~g~~e~i~~~-~~G~lv~~-~d 352 (396)
T cd03818 281 SRVHFLGRVPYDQYLALLQVSDV--HVYLTYPFVLSWSLLEAMACGCLVVGSD----TAPVREVITDG-ENGLLVDF-FD 352 (396)
T ss_pred ceEEEeCCCCHHHHHHHHHhCcE--EEEcCcccccchHHHHHHHCCCCEEEcC----CCCchhhcccC-CceEEcCC-CC
Confidence 5778889999754 6778888 653 2333 48999999999999864 34556666663 57777765 68
Q ss_pred HHHHHHHHHHHhccc
Q 012474 409 RREIETAIRRVTVEA 423 (463)
Q Consensus 409 ~~~l~~~i~~~l~~~ 423 (463)
++++.++|.++++|+
T Consensus 353 ~~~la~~i~~ll~~~ 367 (396)
T cd03818 353 PDALAAAVIELLDDP 367 (396)
T ss_pred HHHHHHHHHHHHhCH
Confidence 999999999999983
No 50
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.27 E-value=9.7e-09 Score=98.77 Aligned_cols=80 Identities=21% Similarity=0.245 Sum_probs=61.5
Q ss_pred cCCCceeeccChh---hhhcCCCCccccc----ccCh-hhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCCc
Q 012474 335 DGRGHIVKWAPQQ---EVLAHPAVGGFWT----HNGW-NSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERK 406 (463)
Q Consensus 335 ~~~~~~~~~vpq~---~lL~~~~~~~~I~----hgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~ 406 (463)
.+++.+.+|+++. .++..+++ +|. ..|. .++.||+++|+|+|+.+. ......+... +.|...+.
T Consensus 242 ~~~v~~~g~~~~~~~~~~~~~ad~--~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i~~~-~~g~~~~~- 313 (359)
T cd03823 242 DPRVEFLGAYPQEEIDDFYAEIDV--LVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELVRDG-VNGLLFPP- 313 (359)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHhcCC-CcEEEECC-
Confidence 4677888999754 46888888 773 2333 589999999999998654 3456667763 67887775
Q ss_pred cCHHHHHHHHHHHhcc
Q 012474 407 FERREIETAIRRVTVE 422 (463)
Q Consensus 407 ~t~~~l~~~i~~~l~~ 422 (463)
-+.+++.+++.++++|
T Consensus 314 ~d~~~l~~~i~~l~~~ 329 (359)
T cd03823 314 GDAEDLAAALERLIDD 329 (359)
T ss_pred CCHHHHHHHHHHHHhC
Confidence 6689999999999998
No 51
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.26 E-value=5.6e-08 Score=95.89 Aligned_cols=162 Identities=12% Similarity=0.092 Sum_probs=94.9
Q ss_pred CeEEEEecCCcccCCHHHHHHHHHHHhcCC----CceEEEEcCCCCCCCccCCCCchhHHHHh----cCCCceeeccChh
Q 012474 276 KSVMYVSFGSIVVVNVTEFLEIAWGLANSR----VPFLWVVRPGLVPGVEWLEPLPKGFLEML----DGRGHIVKWAPQQ 347 (463)
Q Consensus 276 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~vpq~ 347 (463)
++.+++..|+.. ....+..++++++.+. .+++ .++.+. ..+.+.+.. -+|+.+.+|+|+.
T Consensus 228 ~~~~i~~~G~l~--~~kg~~~li~a~~~l~~~~~~~l~-ivG~g~---------~~~~l~~~~~~~~l~~v~f~G~~~~~ 295 (412)
T PRK10307 228 GKKIVLYSGNIG--EKQGLELVIDAARRLRDRPDLIFV-ICGQGG---------GKARLEKMAQCRGLPNVHFLPLQPYD 295 (412)
T ss_pred CCEEEEEcCccc--cccCHHHHHHHHHHhccCCCeEEE-EECCCh---------hHHHHHHHHHHcCCCceEEeCCCCHH
Confidence 345666678775 3334555555555432 2333 344321 112222211 1467888999864
Q ss_pred ---hhhcCCCCcccccccCh------hhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCCccCHHHHHHHHHH
Q 012474 348 ---EVLAHPAVGGFWTHNGW------NSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRR 418 (463)
Q Consensus 348 ---~lL~~~~~~~~I~hgG~------~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~t~~~l~~~i~~ 418 (463)
+++..+++-++.+..+. +.+.|++++|+|+|+....+.. ....++ +.|...+. -+.+++.++|.+
T Consensus 296 ~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~i~---~~G~~~~~-~d~~~la~~i~~ 369 (412)
T PRK10307 296 RLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQLVE---GIGVCVEP-ESVEALVAAIAA 369 (412)
T ss_pred HHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHHHh---CCcEEeCC-CCHHHHHHHHHH
Confidence 47888888444444332 2468999999999998754311 112222 45666664 678999999999
Q ss_pred Hhccch-HHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012474 419 VTVEAE-GQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILS 462 (463)
Q Consensus 419 ~l~~~~-~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 462 (463)
+++|++ .+.+.+++++. ..+.-+.+..++++++.+++
T Consensus 370 l~~~~~~~~~~~~~a~~~-------~~~~fs~~~~~~~~~~~~~~ 407 (412)
T PRK10307 370 LARQALLRPKLGTVAREY-------AERTLDKENVLRQFIADIRG 407 (412)
T ss_pred HHhCHHHHHHHHHHHHHH-------HHHHcCHHHHHHHHHHHHHH
Confidence 998832 23344444433 33455677788887777664
No 52
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.25 E-value=8.5e-09 Score=99.63 Aligned_cols=94 Identities=14% Similarity=0.195 Sum_probs=65.7
Q ss_pred cCCCceeeccChh---hhhcCCCCcccccc----cChhhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCCcc
Q 012474 335 DGRGHIVKWAPQQ---EVLAHPAVGGFWTH----NGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKF 407 (463)
Q Consensus 335 ~~~~~~~~~vpq~---~lL~~~~~~~~I~h----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~ 407 (463)
.+++.+.+++|+. .++..+++ +|.- |+.+++.||+++|+|+|+... ...+..++.. +.|..++. -
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~----~~~~~~i~~~-~~g~~~~~-~ 329 (374)
T cd03817 258 ADRVIFTGFVPREELPDYYKAADL--FVFASTTETQGLVLLEAMAAGLPVVAVDA----PGLPDLVADG-ENGFLFPP-G 329 (374)
T ss_pred CCcEEEeccCChHHHHHHHHHcCE--EEecccccCcChHHHHHHHcCCcEEEeCC----CChhhheecC-ceeEEeCC-C
Confidence 4677888999874 46888888 7743 334789999999999998653 4456677774 77887775 2
Q ss_pred CHHHHHHHHHHHhccch-HHHHHHHHHHHHH
Q 012474 408 ERREIETAIRRVTVEAE-GQEMRERIMHLKE 437 (463)
Q Consensus 408 t~~~l~~~i~~~l~~~~-~~~~~~~a~~~~~ 437 (463)
+. ++.+++.+++++++ ...+.+++++..+
T Consensus 330 ~~-~~~~~i~~l~~~~~~~~~~~~~~~~~~~ 359 (374)
T cd03817 330 DE-ALAEALLRLLQDPELRRRLSKNAEESAE 359 (374)
T ss_pred CH-HHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 22 99999999999842 2234444444433
No 53
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.25 E-value=5.8e-09 Score=101.37 Aligned_cols=329 Identities=16% Similarity=0.102 Sum_probs=165.2
Q ss_pred EEEEEcCCC----ccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCC--------CCCCceEEeCCCCCCCcccccccHH
Q 012474 16 RVILFPLPL----QGHINPMLQLASILYSKGFSITIIHTNFNSPNPS--------NYPHFSFNSISESLWESEVSTENAI 83 (463)
Q Consensus 16 ~il~~~~~~----~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~--------~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (463)
||++++... .|+......+++.|.++||+|++++......... ...++.+..++........ ...
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 77 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIYKGYKREEVDGVRVHRVPLPPYKKNG---LLK 77 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCCceEEEEecCCCcccccccccceEEecCCeEEEEEecCCCCccc---hHH
Confidence 455555442 4899999999999999999999999854332221 1235555555432111110 001
Q ss_pred HHHHHHHHhcCchHHHHHHHHH-hCCCCCCCceEEEeCCch----hhHHHHHHHcCCCeEEEeCchhHHHHHHHHHHHHH
Q 012474 84 SLLTVLNDKCVVPFQDCLAKLI-SNGDQEEPVTCLITDAIW----HFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILL 158 (463)
Q Consensus 84 ~~~~~~~~~~~~~l~~~l~~l~-~~~~~~~~pD~VI~D~~~----~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~ 158 (463)
.....+ .. .......+. +. .+||+|++.... ..+..++...++|++........... .
T Consensus 78 ~~~~~~-~~----~~~~~~~~~~~~----~~~D~v~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~--------~ 140 (394)
T cd03794 78 RLLNYL-SF----ALSALLALLKRR----RRPDVIIATSPPLLIALAALLLARLKGAPFVLEVRDLWPESA--------V 140 (394)
T ss_pred HHHhhh-HH----HHHHHHHHHhcc----cCCCEEEEcCChHHHHHHHHHHHHhcCCCEEEEehhhcchhH--------H
Confidence 111111 10 111111222 11 679999999611 22344556678999876543111000 0
Q ss_pred HhccccccccCCCCCCCccccCCCCCCCcCCCCccccCCCchHHHHHHHH-HhhccCCceEEEcchhhhhHHHHHHhhhc
Q 012474 159 EKGYLAEQVSFSSDSQLEKPVTELPPLRVKDIPIIVTHDTRNFHQLISAV-VSKTKACSGLIWNSFEDLEQTELTRLHKD 237 (463)
Q Consensus 159 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~s~~~le~~~~~~~~~~ 237 (463)
..... ............. ...+..+|.+++.+....+.-. ...
T Consensus 141 ~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~d~vi~~s~~~~~~~~----~~~ 184 (394)
T cd03794 141 ALGLL--------------------------------KNGSLLYRLLRKLERLIYRRADAIVVISPGMREYLV----RRG 184 (394)
T ss_pred HccCc--------------------------------cccchHHHHHHHHHHHHHhcCCEEEEECHHHHHHHH----hcC
Confidence 00000 0000111222222 2235677888887776655321 011
Q ss_pred CC-CCccccccccccccccCCCcccccchhccccccCCCCeEEEEecCCccc-CCHHHHHHHHHHHhcC-CCceEEEEcC
Q 012474 238 FP-IPMFPIGPFHKYCLASSSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVV-VNVTEFLEIAWGLANS-RVPFLWVVRP 314 (463)
Q Consensus 238 ~~-~~v~~vGpl~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~-~~~~~~~~~~~al~~~-~~~~v~~~~~ 314 (463)
.+ .++..+......... ............. ...++.+++..|+... -..+.+..++..+.+. +.++++ ++.
T Consensus 185 ~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~~--~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~~~~~l~i-~G~ 258 (394)
T cd03794 185 VPPEKISVIPNGVDLELF---KPPPADESLRKEL--GLDDKFVVLYAGNIGRAQGLDTLLEAAALLKDRPDIRFLI-VGD 258 (394)
T ss_pred CCcCceEEcCCCCCHHHc---CCccchhhhhhcc--CCCCcEEEEEecCcccccCHHHHHHHHHHHhhcCCeEEEE-eCC
Confidence 11 234444422221110 0000000001111 1234567777787654 2233344444444333 334433 333
Q ss_pred CCCCCCccCCCCchhHH----HHhcCCCceeeccChh---hhhcCCCCcccccccC---------hhhHHHHHhhCCcee
Q 012474 315 GLVPGVEWLEPLPKGFL----EMLDGRGHIVKWAPQQ---EVLAHPAVGGFWTHNG---------WNSTLESICEGVPMI 378 (463)
Q Consensus 315 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~vpq~---~lL~~~~~~~~I~hgG---------~~s~~eal~~GvP~l 378 (463)
+. ..+.+. ....+|+.+.+++++. +++..+++ +|.... -+++.||+++|+|+|
T Consensus 259 ~~---------~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi 327 (394)
T cd03794 259 GP---------EKEELKELAKALGLDNVTFLGRVPKEELPELLAAADV--GLVPLKPGPAFEGVSPSKLFEYMAAGKPVL 327 (394)
T ss_pred cc---------cHHHHHHHHHHcCCCcEEEeCCCChHHHHHHHHhhCe--eEEeccCcccccccCchHHHHHHHCCCcEE
Confidence 21 112222 2233677888999864 47888888 774322 234799999999999
Q ss_pred ccccccchhhhHHHHHHHhhceeecCCccCHHHHHHHHHHHhccc
Q 012474 379 CQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVEA 423 (463)
Q Consensus 379 ~~P~~~DQ~~na~rv~~~~G~G~~l~~~~t~~~l~~~i~~~l~~~ 423 (463)
+.+..+.+. .+.. .+.|...+. -+.+++.++|.+++.|+
T Consensus 328 ~~~~~~~~~----~~~~-~~~g~~~~~-~~~~~l~~~i~~~~~~~ 366 (394)
T cd03794 328 ASVDGESAE----LVEE-AGAGLVVPP-GDPEALAAAILELLDDP 366 (394)
T ss_pred EecCCCchh----hhcc-CCcceEeCC-CCHHHHHHHHHHHHhCh
Confidence 988765433 3334 266666664 58899999999999883
No 54
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.23 E-value=6.6e-09 Score=101.86 Aligned_cols=80 Identities=16% Similarity=0.214 Sum_probs=62.3
Q ss_pred CCCceeeccChhh---hhcCCCCcccccc----cChhhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCCccC
Q 012474 336 GRGHIVKWAPQQE---VLAHPAVGGFWTH----NGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFE 408 (463)
Q Consensus 336 ~~~~~~~~vpq~~---lL~~~~~~~~I~h----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~t 408 (463)
+++.+.+|+|+.+ ++..+++ +++. |--.++.||+++|+|+|+.... .....+++. +.|...+. -+
T Consensus 283 ~~v~~~g~~~~~~~~~~~~~adi--~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~----~~~e~i~~~-~~g~~~~~-~~ 354 (398)
T cd03800 283 DRVDFPGRVSREDLPALYRAADV--FVNPALYEPFGLTALEAMACGLPVVATAVG----GPRDIVVDG-VTGLLVDP-RD 354 (398)
T ss_pred ceEEEeccCCHHHHHHHHHhCCE--EEecccccccCcHHHHHHhcCCCEEECCCC----CHHHHccCC-CCeEEeCC-CC
Confidence 6778889999755 5888888 7744 2236899999999999876643 355667773 78888775 67
Q ss_pred HHHHHHHHHHHhccc
Q 012474 409 RREIETAIRRVTVEA 423 (463)
Q Consensus 409 ~~~l~~~i~~~l~~~ 423 (463)
.+++.++|.++++|+
T Consensus 355 ~~~l~~~i~~l~~~~ 369 (398)
T cd03800 355 PEALAAALRRLLTDP 369 (398)
T ss_pred HHHHHHHHHHHHhCH
Confidence 999999999999883
No 55
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.22 E-value=2e-08 Score=96.60 Aligned_cols=337 Identities=15% Similarity=0.069 Sum_probs=176.4
Q ss_pred ccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCC-CCceEEeCCCCCCCcccccccHHHHHHHHHHhcCchHHHHHHH
Q 012474 25 QGHINPMLQLASILYSKGFSITIIHTNFNSPNPSNY-PHFSFNSISESLWESEVSTENAISLLTVLNDKCVVPFQDCLAK 103 (463)
Q Consensus 25 ~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 103 (463)
.|+...+..+++.|.+.||+|++++........... ........ ... ......... ......+..
T Consensus 14 ~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~~~~~~~------~~~~~~~~~ 79 (374)
T cd03801 14 GGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEVGGIVVVRP-----PPL---LRVRRLLLL------LLLALRLRR 79 (374)
T ss_pred CcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeeecCcceecC-----Ccc---cccchhHHH------HHHHHHHHH
Confidence 588999999999999999999999986433221110 00000000 000 000000000 001112222
Q ss_pred HHhCCCCCCCceEEEeCCchhhHH--HHHHHcCCCeEEEeCchhHHHHHHHHHHHHHHhccccccccCCCCCCCccccCC
Q 012474 104 LISNGDQEEPVTCLITDAIWHFAQ--TVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYLAEQVSFSSDSQLEKPVTE 181 (463)
Q Consensus 104 l~~~~~~~~~pD~VI~D~~~~~~~--~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 181 (463)
+.+. .++|+|+......... ..+...++|.+........... ..
T Consensus 80 ~~~~----~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~---------------~~--------------- 125 (374)
T cd03801 80 LLRR----ERFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGRP---------------GN--------------- 125 (374)
T ss_pred Hhhh----cCCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhhcc---------------cc---------------
Confidence 2222 5799999887664443 4677789999876655221100 00
Q ss_pred CCCCCcCCCCccccCCCchHHHHHH-HHHhhccCCceEEEcchhhhhHHHHHHhhhcCCC---CccccccccccccccCC
Q 012474 182 LPPLRVKDIPIIVTHDTRNFHQLIS-AVVSKTKACSGLIWNSFEDLEQTELTRLHKDFPI---PMFPIGPFHKYCLASSS 257 (463)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~---~v~~vGpl~~~~~~~~~ 257 (463)
.......... .........+.+++.+....+.- .+.++. ++..+..-.....-
T Consensus 126 ---------------~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~--- 182 (374)
T cd03801 126 ---------------ELGLLLKLARALERRALRRADRIIAVSEATREEL-----RELGGVPPEKITVIPNGVDTERF--- 182 (374)
T ss_pred ---------------chhHHHHHHHHHHHHHHHhCCEEEEecHHHHHHH-----HhcCCCCCCcEEEecCccccccc---
Confidence 0000111111 12334566788888877666542 232332 34444422211110
Q ss_pred CcccccchhccccccCCCCeEEEEecCCcccCCHHHHHHHHHHHhcCC---CceE-EEEcCCCCCCCccCCCCchhHHH-
Q 012474 258 SLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSR---VPFL-WVVRPGLVPGVEWLEPLPKGFLE- 332 (463)
Q Consensus 258 ~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~---~~~v-~~~~~~~~~~~~~~~~~~~~~~~- 332 (463)
...+ .....-.. ...+..+++.+|+... ...+..+++++.... .++- +.++.+. ..+.+.+
T Consensus 183 ~~~~--~~~~~~~~-~~~~~~~i~~~g~~~~--~k~~~~~i~~~~~~~~~~~~~~l~i~G~~~---------~~~~~~~~ 248 (374)
T cd03801 183 RPAP--RAARRRLG-IPEDEPVILFVGRLVP--RKGVDLLLEALAKLRKEYPDVRLVIVGDGP---------LREELEAL 248 (374)
T ss_pred Cccc--hHHHhhcC-CcCCCeEEEEecchhh--hcCHHHHHHHHHHHhhhcCCeEEEEEeCcH---------HHHHHHHH
Confidence 0000 00001111 1234456677777653 233444444444332 1232 2233211 1122211
Q ss_pred ----HhcCCCceeeccCh---hhhhcCCCCccccc----ccChhhHHHHHhhCCceeccccccchhhhHHHHHHHhhcee
Q 012474 333 ----MLDGRGHIVKWAPQ---QEVLAHPAVGGFWT----HNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGL 401 (463)
Q Consensus 333 ----~~~~~~~~~~~vpq---~~lL~~~~~~~~I~----hgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~ 401 (463)
...+++.+.+++++ ..++..+++ +|. -|.-+++.||+++|+|+|+.+. ......+++. +.|.
T Consensus 249 ~~~~~~~~~v~~~g~~~~~~~~~~~~~~di--~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~~-~~g~ 321 (374)
T cd03801 249 AAELGLGDRVTFLGFVPDEDLPALYAAADV--FVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVEDG-ETGL 321 (374)
T ss_pred HHHhCCCcceEEEeccChhhHHHHHHhcCE--EEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcCC-cceE
Confidence 14467788899974 457888888 773 3456799999999999998665 4566777764 7888
Q ss_pred ecCCccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 012474 402 HLERKFERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHI 460 (463)
Q Consensus 402 ~l~~~~t~~~l~~~i~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 460 (463)
..+. .+.+++.++|.+++.|++ .+++..++.++.+. +.-+.++..+++.+.+
T Consensus 322 ~~~~-~~~~~l~~~i~~~~~~~~--~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 373 (374)
T cd03801 322 LVPP-GDPEALAEAILRLLDDPE--LRRRLGEAARERVA----ERFSWDRVAARTEEVY 373 (374)
T ss_pred EeCC-CCHHHHHHHHHHHHcChH--HHHHHHHHHHHHHH----HhcCHHHHHHHHHHhh
Confidence 7775 679999999999999831 22222222222333 4566777777777765
No 56
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.21 E-value=1.7e-08 Score=96.83 Aligned_cols=315 Identities=15% Similarity=0.096 Sum_probs=162.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCcccccccHHHHHHHHHHhcCc
Q 012474 16 RVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSNYPHFSFNSISESLWESEVSTENAISLLTVLNDKCVV 95 (463)
Q Consensus 16 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (463)
||++++....|+...+..++++|.++||+|++++............+++++.++..... ......+..+
T Consensus 1 kIl~i~~~~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~------ 69 (359)
T cd03808 1 KILHIVTVDGGLYSFRLPLIKALRAAGYEVHVVAPPGDELEELEALGVKVIPIPLDRRG-----INPFKDLKAL------ 69 (359)
T ss_pred CeeEEEecchhHHHHHHHHHHHHHhcCCeeEEEecCCCcccccccCCceEEeccccccc-----cChHhHHHHH------
Confidence 57777777778999999999999999999999998644332222356777766532210 0111111111
Q ss_pred hHHHHHHHHHhCCCCCCCceEEEeCCchh--hHHHHHHHcCCCeEEEeCchhHHHHHHHHHHHHHHhccccccccCCCCC
Q 012474 96 PFQDCLAKLISNGDQEEPVTCLITDAIWH--FAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYLAEQVSFSSDS 173 (463)
Q Consensus 96 ~l~~~l~~l~~~~~~~~~pD~VI~D~~~~--~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 173 (463)
......+.+ .+||+|++..... .+..++...+.|.+.......... ...
T Consensus 70 --~~~~~~~~~-----~~~dvv~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---------------~~~------- 120 (359)
T cd03808 70 --LRLYRLLRK-----ERPDIVHTHTPKPGILGRLAARLAGVPKVIYTVHGLGFV---------------FTS------- 120 (359)
T ss_pred --HHHHHHHHh-----cCCCEEEEccccchhHHHHHHHHcCCCCEEEEecCcchh---------------hcc-------
Confidence 112222222 6799999875432 233444545665555433211100 000
Q ss_pred CCccccCCCCCCCcCCCCccccCCCchHHHHHHHHHhhccCCceEEEcchhhhhHHHHHHhhhcCC---CC-cccccccc
Q 012474 174 QLEKPVTELPPLRVKDIPIIVTHDTRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELTRLHKDFP---IP-MFPIGPFH 249 (463)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~---~~-v~~vGpl~ 249 (463)
. .........+. ......+|.+++.|....+.- .+... .. ++..+...
T Consensus 121 ~---------------------~~~~~~~~~~~--~~~~~~~d~ii~~s~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 172 (359)
T cd03808 121 G---------------------GLKRRLYLLLE--RLALRFTDKVIFQNEDDRDLA-----LKLGIIKKKKTVLIPGSGV 172 (359)
T ss_pred c---------------------hhHHHHHHHHH--HHHHhhccEEEEcCHHHHHHH-----HHhcCCCcCceEEecCCCC
Confidence 0 00001111111 112345578888776655531 11111 11 22222111
Q ss_pred ccccccCCCcccccchhccccccCCCCeEEEEecCCccc-CCHHHHHHHHHHHhcCCCce-EEEEcCCCCCCCccCCCCc
Q 012474 250 KYCLASSSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVV-VNVTEFLEIAWGLANSRVPF-LWVVRPGLVPGVEWLEPLP 327 (463)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~-~~~~~~~~~~~al~~~~~~~-v~~~~~~~~~~~~~~~~~~ 327 (463)
..... .+.. .. ...++.+++..|+... -..+.+..++..+.+.+..+ ++.++.... . ....
T Consensus 173 ~~~~~-----~~~~---~~----~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~-~----~~~~ 235 (359)
T cd03808 173 DLDRF-----SPSP---EP----IPEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDE-E----NPAA 235 (359)
T ss_pred Chhhc-----Cccc---cc----cCCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCc-c----hhhH
Confidence 11100 0000 00 1234577888887654 22333444444444322332 233333210 0 0000
Q ss_pred hh-HHH-HhcCCCceeeccCh-hhhhcCCCCcccccccC----hhhHHHHHhhCCceeccccccchhhhHHHHHHHhhce
Q 012474 328 KG-FLE-MLDGRGHIVKWAPQ-QEVLAHPAVGGFWTHNG----WNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVG 400 (463)
Q Consensus 328 ~~-~~~-~~~~~~~~~~~vpq-~~lL~~~~~~~~I~hgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G 400 (463)
.. +.+ ....++.+.++..+ ..++..+++ +|.-+. -+++.||+++|+|+|+.+.. .....+++. +.|
T Consensus 236 ~~~~~~~~~~~~v~~~g~~~~~~~~~~~adi--~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~----~~~~~i~~~-~~g 308 (359)
T cd03808 236 ILEIEKLGLEGRVEFLGFRDDVPELLAAADV--FVLPSYREGLPRVLLEAMAMGRPVIATDVP----GCREAVIDG-VNG 308 (359)
T ss_pred HHHHHhcCCcceEEEeeccccHHHHHHhccE--EEecCcccCcchHHHHHHHcCCCEEEecCC----CchhhhhcC-cce
Confidence 00 111 12355666777554 678999998 775432 57899999999999986543 345666663 778
Q ss_pred eecCCccCHHHHHHHHHHHhccc
Q 012474 401 LHLERKFERREIETAIRRVTVEA 423 (463)
Q Consensus 401 ~~l~~~~t~~~l~~~i~~~l~~~ 423 (463)
...+. -+.+++.++|.+++.|+
T Consensus 309 ~~~~~-~~~~~~~~~i~~l~~~~ 330 (359)
T cd03808 309 FLVPP-GDAEALADAIERLIEDP 330 (359)
T ss_pred EEECC-CCHHHHHHHHHHHHhCH
Confidence 77765 67899999999999884
No 57
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=99.20 E-value=1.3e-09 Score=102.72 Aligned_cols=159 Identities=13% Similarity=0.041 Sum_probs=100.5
Q ss_pred CeEEEEecCCcccCCHHHHHHHHHHHhcCCCc-eEEEEcCCCCCCCccCCCCchhHHHHhcCCCceeeccCh-hhhhcCC
Q 012474 276 KSVMYVSFGSIVVVNVTEFLEIAWGLANSRVP-FLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIVKWAPQ-QEVLAHP 353 (463)
Q Consensus 276 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpq-~~lL~~~ 353 (463)
+++|.+--||..+--...+..++++...+..+ .++.+.... .. +.+.+..... ....++.+ .+++..+
T Consensus 167 ~~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~--------~~-~~i~~~~~~~-~~~~~~~~~~~~m~~a 236 (347)
T PRK14089 167 EGTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFF--------KG-KDLKEIYGDI-SEFEISYDTHKALLEA 236 (347)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCC--------cH-HHHHHHHhcC-CCcEEeccHHHHHHhh
Confidence 36899999998763334444444555443322 233332211 01 2232222211 11223333 6789999
Q ss_pred CCcccccccChhhHHHHHhhCCceecccc--ccchhhhHHHHH---HHhhceeec-------------CC-ccCHHHHHH
Q 012474 354 AVGGFWTHNGWNSTLESICEGVPMICQPC--FGDQLVNARYVS---HVWRVGLHL-------------ER-KFERREIET 414 (463)
Q Consensus 354 ~~~~~I~hgG~~s~~eal~~GvP~l~~P~--~~DQ~~na~rv~---~~~G~G~~l-------------~~-~~t~~~l~~ 414 (463)
++ +|+-.|..|+ |+..+|+|+|+ ++ ..-|+.||+++. . .|+...+ -. ..|++.|.+
T Consensus 237 Dl--al~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~-igL~Nii~~~~~~~~vvPEllQ~~~t~~~la~ 311 (347)
T PRK14089 237 EF--AFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKH-IGLANIFFDFLGKEPLHPELLQEFVTVENLLK 311 (347)
T ss_pred hH--HHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCe-eehHHHhcCCCcccccCchhhcccCCHHHHHH
Confidence 99 9999999999 99999999998 54 357889999998 6 3666555 22 689999999
Q ss_pred HHHHHhccchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHH
Q 012474 415 AIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVD 458 (463)
Q Consensus 415 ~i~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~ 458 (463)
.+.+ ... +.+++...++++.+. .+++.++++.+.+
T Consensus 312 ~i~~-~~~---~~~~~~~~~l~~~l~-----~~a~~~~A~~i~~ 346 (347)
T PRK14089 312 AYKE-MDR---EKFFKKSKELREYLK-----HGSAKNVAKILKE 346 (347)
T ss_pred HHHH-HHH---HHHHHHHHHHHHHhc-----CCHHHHHHHHHhc
Confidence 9987 222 567777777777664 3666666655543
No 58
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.18 E-value=2.2e-08 Score=98.51 Aligned_cols=343 Identities=14% Similarity=0.096 Sum_probs=172.7
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCC--CCCCCceEEeCCCCCCCcccccccHHHHHHHHH
Q 012474 13 KGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNP--SNYPHFSFNSISESLWESEVSTENAISLLTVLN 90 (463)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (463)
++.||++++..-.|+-..+..+|++|+++||+|++++........ ....|+.++.++.... .. ......+..+.
T Consensus 2 ~~~~~~~~~~~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~---~~~~~~~~~~~ 77 (415)
T cd03816 2 KRKRVCVLVLGDIGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDEILSNPNITIHPLPPPPQ-RL---NKLPFLLFAPL 77 (415)
T ss_pred CccEEEEEEecccCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHHHhcCCCEEEEECCCCcc-cc---ccchHHHHHHH
Confidence 456788888888888899999999999999999999875322111 2335788887764210 01 11111111111
Q ss_pred HhcCchHHHHHHHHHhCCCCCCCceEEEeCCch-----hhHHHHHHHcCCCeEEEeCchhHHHHHHHHHHHHHHhccccc
Q 012474 91 DKCVVPFQDCLAKLISNGDQEEPVTCLITDAIW-----HFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYLAE 165 (463)
Q Consensus 91 ~~~~~~l~~~l~~l~~~~~~~~~pD~VI~D~~~-----~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~ 165 (463)
... ..+..++..+... .+||+|++.... ..+..++...++|.|..+....... .....
T Consensus 78 ~~~-~~~~~~~~~l~~~----~~~Dvi~~~~~~~~~~~~~a~~~~~~~~~~~V~~~h~~~~~~---------~~~~~--- 140 (415)
T cd03816 78 KVL-WQFFSLLWLLYKL----RPADYILIQNPPSIPTLLIAWLYCLLRRTKLIIDWHNYGYTI---------LALKL--- 140 (415)
T ss_pred HHH-HHHHHHHHHHHhc----CCCCEEEEeCCCCchHHHHHHHHHHHhCCeEEEEcCCchHHH---------Hhccc---
Confidence 101 1112223333332 569999975311 1234456667999887544321110 00000
Q ss_pred cccCCCCCCCccccCCCCCCCcCCCCccccCCCchHHHHHHHHHh-hccCCceEEEcchhhhhHHHHHHhhhcCCCC--c
Q 012474 166 QVSFSSDSQLEKPVTELPPLRVKDIPIIVTHDTRNFHQLISAVVS-KTKACSGLIWNSFEDLEQTELTRLHKDFPIP--M 242 (463)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~--v 242 (463)
............... ....+|.+++.|...-+.- .. ... .+.+ +
T Consensus 141 ------------------------------~~~~~~~~~~~~~e~~~~~~ad~ii~vS~~~~~~l-~~-~~~-~~~ki~v 187 (415)
T cd03816 141 ------------------------------GENHPLVRLAKWYEKLFGRLADYNLCVTKAMKEDL-QQ-FNN-WKIRATV 187 (415)
T ss_pred ------------------------------CCCCHHHHHHHHHHHHHhhcCCEeeecCHHHHHHH-Hh-hhc-cCCCeee
Confidence 000111122222222 2355788888777655432 11 000 0122 2
Q ss_pred cccccccccccccCCCcccccchhcccc----------------ccCCCCeEEEEecCCcccCCHHHHHHHHHHHhcCC-
Q 012474 243 FPIGPFHKYCLASSSSLLSQDQSCISWL----------------DKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSR- 305 (463)
Q Consensus 243 ~~vGpl~~~~~~~~~~~~~~~~~l~~~l----------------~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~- 305 (463)
++=|.. ... .+.+....-..+. ...+++..++++.|.... ...+..+++|++.+.
T Consensus 188 I~Ng~~--~~f----~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~grl~~--~K~~~~li~A~~~l~~ 259 (415)
T cd03816 188 LYDRPP--EQF----RPLPLEEKHELFLKLAKTFLTRELRIGAVQLSEERPALLVSSTSWTP--DEDFGILLDALVAYEK 259 (415)
T ss_pred cCCCCH--HHc----eeCcHHHHHHHHHhccccccccccccccceecCCCceEEEEeccccC--CCCHHHHHHHHHHHHH
Confidence 332311 000 0000000000010 001234456666676543 233444444444321
Q ss_pred --------CceE-EEEcCCCCCCCccCCCCchhHHHHhc----CCCcee-eccCh---hhhhcCCCCccccc-c----c-
Q 012474 306 --------VPFL-WVVRPGLVPGVEWLEPLPKGFLEMLD----GRGHIV-KWAPQ---QEVLAHPAVGGFWT-H----N- 362 (463)
Q Consensus 306 --------~~~v-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~vpq---~~lL~~~~~~~~I~-h----g- 362 (463)
.++. +.++.+. .-+.+.+... +++.+. +|+|. .++|..+++ +|. + |
T Consensus 260 ~~~~~~~~~~i~l~ivG~G~---------~~~~l~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~aDv--~v~~~~~~~~~ 328 (415)
T cd03816 260 SAATGPKLPKLLCIITGKGP---------LKEKYLERIKELKLKKVTIRTPWLSAEDYPKLLASADL--GVSLHTSSSGL 328 (415)
T ss_pred hhcccccCCCEEEEEEecCc---------cHHHHHHHHHHcCCCcEEEEcCcCCHHHHHHHHHhCCE--EEEcccccccc
Confidence 1232 3334322 1122222221 344444 68874 446888898 763 1 1
Q ss_pred C-hhhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCCccCHHHHHHHHHHHhcc---ch-HHHHHHHHHHHH
Q 012474 363 G-WNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVE---AE-GQEMRERIMHLK 436 (463)
Q Consensus 363 G-~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~t~~~l~~~i~~~l~~---~~-~~~~~~~a~~~~ 436 (463)
| -+++.||+++|+|+|+... ......+++. +.|...+ +.+++.++|.++++| ++ ...|.+++++..
T Consensus 329 ~~p~~~~Eama~G~PVI~s~~----~~~~eiv~~~-~~G~lv~---d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 329 DLPMKVVDMFGCGLPVCALDF----KCIDELVKHG-ENGLVFG---DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred CCcHHHHHHHHcCCCEEEeCC----CCHHHHhcCC-CCEEEEC---CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 2 3579999999999998553 3556677774 7888763 789999999999998 43 455555555544
No 59
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.16 E-value=6.3e-08 Score=93.66 Aligned_cols=116 Identities=15% Similarity=0.085 Sum_probs=78.1
Q ss_pred hcCCCceeeccC-h---hhhhcCCCCccccccc----ChhhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCC
Q 012474 334 LDGRGHIVKWAP-Q---QEVLAHPAVGGFWTHN----GWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLER 405 (463)
Q Consensus 334 ~~~~~~~~~~vp-q---~~lL~~~~~~~~I~hg----G~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~ 405 (463)
...++.+.+|++ + ..++..+++ +|.-. ..+++.||+++|+|+|+... ......+... +.|..++.
T Consensus 242 ~~~~v~~~g~~~~~~~~~~~~~~ad~--~l~ps~~e~~g~~~~Eam~~g~PvI~~~~----~~~~e~~~~~-~~g~~~~~ 314 (365)
T cd03825 242 LPFPVHYLGSLNDDESLALIYSAADV--FVVPSLQENFPNTAIEALACGTPVVAFDV----GGIPDIVDHG-VTGYLAKP 314 (365)
T ss_pred CCCceEecCCcCCHHHHHHHHHhCCE--EEeccccccccHHHHHHHhcCCCEEEecC----CCChhheeCC-CceEEeCC
Confidence 345567779988 4 356888888 87743 34799999999999987653 2333445552 56776665
Q ss_pred ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhcC
Q 012474 406 KFERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILSF 463 (463)
Q Consensus 406 ~~t~~~l~~~i~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 463 (463)
.+.+++.+++.++++|+ ..+ .++++..++...+.-+.++.++++.+.++++
T Consensus 315 -~~~~~~~~~l~~l~~~~---~~~---~~~~~~~~~~~~~~~s~~~~~~~~~~~y~~~ 365 (365)
T cd03825 315 -GDPEDLAEGIEWLLADP---DER---EELGEAARELAENEFDSRVQAKRYLSLYEEL 365 (365)
T ss_pred -CCHHHHHHHHHHHHhCH---HHH---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence 67899999999999883 322 2222222222224567788888888887753
No 60
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.11 E-value=2.2e-08 Score=99.11 Aligned_cols=71 Identities=14% Similarity=0.180 Sum_probs=56.3
Q ss_pred hhhhcCCCCcccccc-----cChhhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCCccCHHHHHHHHHHHhc
Q 012474 347 QEVLAHPAVGGFWTH-----NGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTV 421 (463)
Q Consensus 347 ~~lL~~~~~~~~I~h-----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~t~~~l~~~i~~~l~ 421 (463)
..+++.+++ ++.. ||..++.||+++|+|+|+-|..+++......+.+. |+++.. -+++++.++|.++++
T Consensus 314 ~~~y~~aDi--~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~-g~~~~~---~d~~~La~~l~~ll~ 387 (425)
T PRK05749 314 GLLYAIADI--AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQA-GAAIQV---EDAEDLAKAVTYLLT 387 (425)
T ss_pred HHHHHhCCE--EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHC-CCeEEE---CCHHHHHHHHHHHhc
Confidence 567888887 5432 33446999999999999999988888888887774 777652 468999999999999
Q ss_pred cc
Q 012474 422 EA 423 (463)
Q Consensus 422 ~~ 423 (463)
|+
T Consensus 388 ~~ 389 (425)
T PRK05749 388 DP 389 (425)
T ss_pred CH
Confidence 83
No 61
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.10 E-value=1.5e-07 Score=92.58 Aligned_cols=110 Identities=14% Similarity=0.095 Sum_probs=75.9
Q ss_pred CCCceeeccCh---hhhhcCCCCccccc---ccC-hhhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCCccC
Q 012474 336 GRGHIVKWAPQ---QEVLAHPAVGGFWT---HNG-WNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFE 408 (463)
Q Consensus 336 ~~~~~~~~vpq---~~lL~~~~~~~~I~---hgG-~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~t 408 (463)
+++.+.+++|+ .++|..+++ +|. +.| ..++.||+++|+|+|+.... .....+++. +.|...+. -+
T Consensus 283 ~~v~~~g~~~~~~~~~~l~~ad~--~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~----~~~e~i~~~-~~g~~~~~-~d 354 (405)
T TIGR03449 283 DRVRFLPPRPPEELVHVYRAADV--VAVPSYNESFGLVAMEAQACGTPVVAARVG----GLPVAVADG-ETGLLVDG-HD 354 (405)
T ss_pred ceEEECCCCCHHHHHHHHHhCCE--EEECCCCCCcChHHHHHHHcCCCEEEecCC----CcHhhhccC-CceEECCC-CC
Confidence 57788899986 457889998 763 233 35899999999999986543 344566663 67877765 68
Q ss_pred HHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 012474 409 RREIETAIRRVTVEAE-GQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHIL 461 (463)
Q Consensus 409 ~~~l~~~i~~~l~~~~-~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 461 (463)
.+++.++|.+++++++ .+.+.+++++.. +.-+-+..++++.+.+.
T Consensus 355 ~~~la~~i~~~l~~~~~~~~~~~~~~~~~--------~~fsw~~~~~~~~~~y~ 400 (405)
T TIGR03449 355 PADWADALARLLDDPRTRIRMGAAAVEHA--------AGFSWAATADGLLSSYR 400 (405)
T ss_pred HHHHHHHHHHHHhCHHHHHHHHHHHHHHH--------HhCCHHHHHHHHHHHHH
Confidence 8999999999999832 233444444322 23456677777766654
No 62
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.10 E-value=2.5e-07 Score=89.16 Aligned_cols=113 Identities=17% Similarity=0.138 Sum_probs=78.3
Q ss_pred cCCCceeeccChh---hhhcCCCCccccc----ccChhhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCCcc
Q 012474 335 DGRGHIVKWAPQQ---EVLAHPAVGGFWT----HNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKF 407 (463)
Q Consensus 335 ~~~~~~~~~vpq~---~lL~~~~~~~~I~----hgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~ 407 (463)
.+++.+.+++++. .++..+++ +|. -|.-+++.||+++|+|+|+.+. ......+... +.|...+. -
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad~--~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~----~~~~~~~~~~-~~g~~~~~-~ 329 (377)
T cd03798 258 EDRVTFLGAVPHEEVPAYYAAADV--FVLPSLREGFGLVLLEAMACGLPVVATDV----GGIPEIITDG-ENGLLVPP-G 329 (377)
T ss_pred cceEEEeCCCCHHHHHHHHHhcCe--eecchhhccCChHHHHHHhcCCCEEEecC----CChHHHhcCC-cceeEECC-C
Confidence 4677888999864 57888888 662 2455789999999999997654 3455667773 77777765 7
Q ss_pred CHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhcC
Q 012474 408 ERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILSF 463 (463)
Q Consensus 408 t~~~l~~~i~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 463 (463)
+.+++.++|.+++++ ... +..++..+.+. +.-+.+..++++.+.++++
T Consensus 330 ~~~~l~~~i~~~~~~---~~~-~~~~~~~~~~~----~~~s~~~~~~~~~~~~~~l 377 (377)
T cd03798 330 DPEALAEAILRLLAD---PWL-RLGRAARRRVA----ERFSWENVAERLLELYREV 377 (377)
T ss_pred CHHHHHHHHHHHhcC---cHH-HHhHHHHHHHH----HHhhHHHHHHHHHHHHhhC
Confidence 899999999999998 332 22222222222 3445677788888877653
No 63
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.08 E-value=1.9e-07 Score=89.11 Aligned_cols=92 Identities=17% Similarity=0.219 Sum_probs=62.3
Q ss_pred CCCceeeccCh-hhhhcCCCCcccccccC----hhhHHHHHhhCCceeccccccchhhhHHHHHHHhh-ceeecCCccCH
Q 012474 336 GRGHIVKWAPQ-QEVLAHPAVGGFWTHNG----WNSTLESICEGVPMICQPCFGDQLVNARYVSHVWR-VGLHLERKFER 409 (463)
Q Consensus 336 ~~~~~~~~vpq-~~lL~~~~~~~~I~hgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G-~G~~l~~~~t~ 409 (463)
.++.+.++... ..++..+++ +|.-.. -+++.||+++|+|+|+.+..+.+ ..+... | .|...+. .+.
T Consensus 235 ~~v~~~g~~~~~~~~~~~ad~--~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~----~~~~~~-~~~g~~~~~-~~~ 306 (348)
T cd03820 235 DRVILLGFTKNIEEYYAKASI--FVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGP----SEIIED-GVNGLLVPN-GDV 306 (348)
T ss_pred CeEEEcCCcchHHHHHHhCCE--EEeCccccccCHHHHHHHHcCCCEEEecCCCch----Hhhhcc-CcceEEeCC-CCH
Confidence 44555566443 678888888 775542 47899999999999987654433 233343 5 7877775 678
Q ss_pred HHHHHHHHHHhccch-HHHHHHHHHHH
Q 012474 410 REIETAIRRVTVEAE-GQEMRERIMHL 435 (463)
Q Consensus 410 ~~l~~~i~~~l~~~~-~~~~~~~a~~~ 435 (463)
+++.++|.++++|++ ...+.++++.+
T Consensus 307 ~~~~~~i~~ll~~~~~~~~~~~~~~~~ 333 (348)
T cd03820 307 EALAEALLRLMEDEELRKRMGANARES 333 (348)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 999999999999843 23344444333
No 64
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.05 E-value=2.8e-07 Score=88.79 Aligned_cols=139 Identities=19% Similarity=0.192 Sum_probs=88.2
Q ss_pred CeEEEEecCCcccCCHHHHHHHHHHHhcCC-CceEEEEcCCCCCCCccCCCCchhHHH-----HhcCCCceeeccChh--
Q 012474 276 KSVMYVSFGSIVVVNVTEFLEIAWGLANSR-VPFLWVVRPGLVPGVEWLEPLPKGFLE-----MLDGRGHIVKWAPQQ-- 347 (463)
Q Consensus 276 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~vpq~-- 347 (463)
+..+++..|+.. ....+..+++++++.. .++++...+. ..+.+.+ ...+|+.+.+|+|+.
T Consensus 190 ~~~~i~~~G~~~--~~K~~~~li~a~~~l~~~~l~i~G~g~----------~~~~~~~~~~~~~~~~~V~~~g~v~~~~~ 257 (357)
T cd03795 190 GRPFFLFVGRLV--YYKGLDVLLEAAAALPDAPLVIVGEGP----------LEAELEALAAALGLLDRVRFLGRLDDEEK 257 (357)
T ss_pred CCcEEEEecccc--cccCHHHHHHHHHhccCcEEEEEeCCh----------hHHHHHHHHHhcCCcceEEEcCCCCHHHH
Confidence 345677777765 3345666777777776 4444433221 1122221 234688889999974
Q ss_pred -hhhcCCCCcccc--c---ccCh-hhHHHHHhhCCceeccccccchhhhHHHHHH-HhhceeecCCccCHHHHHHHHHHH
Q 012474 348 -EVLAHPAVGGFW--T---HNGW-NSTLESICEGVPMICQPCFGDQLVNARYVSH-VWRVGLHLERKFERREIETAIRRV 419 (463)
Q Consensus 348 -~lL~~~~~~~~I--~---hgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~-~~G~G~~l~~~~t~~~l~~~i~~~ 419 (463)
.++..+++ +| + +.|. .++.||+++|+|+|+....+.. ..+.. . +.|...+. -+.+++.++|.++
T Consensus 258 ~~~~~~ad~--~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~----~~i~~~~-~~g~~~~~-~d~~~~~~~i~~l 329 (357)
T cd03795 258 AALLAACDV--FVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGG----SYVNLHG-VTGLVVPP-GDPAALAEAIRRL 329 (357)
T ss_pred HHHHHhCCE--EEeCCcccccccchHHHHHHHcCCCEEecCCCCch----hHHhhCC-CceEEeCC-CCHHHHHHHHHHH
Confidence 57878888 55 3 2343 4799999999999987654443 33332 4 77776664 6899999999999
Q ss_pred hccch-HHHHHHHHHH
Q 012474 420 TVEAE-GQEMRERIMH 434 (463)
Q Consensus 420 l~~~~-~~~~~~~a~~ 434 (463)
++|++ ...+++++++
T Consensus 330 ~~~~~~~~~~~~~~~~ 345 (357)
T cd03795 330 LEDPELRERLGEAARE 345 (357)
T ss_pred HHCHHHHHHHHHHHHH
Confidence 99843 3344444443
No 65
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.01 E-value=3.6e-07 Score=88.52 Aligned_cols=81 Identities=19% Similarity=0.226 Sum_probs=63.0
Q ss_pred cCCCceeeccChh---hhhcCCCCcccccc----------cChhhHHHHHhhCCceeccccccchhhhHHHHHHHhhcee
Q 012474 335 DGRGHIVKWAPQQ---EVLAHPAVGGFWTH----------NGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGL 401 (463)
Q Consensus 335 ~~~~~~~~~vpq~---~lL~~~~~~~~I~h----------gG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~ 401 (463)
.+++.+.+++|+. .++..+++ +|.- |-.+++.||+++|+|+|+.+.. .++..+.+. +.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad~--~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i~~~-~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRARI--FLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAVEDG-ETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCCE--EEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----CchhheecC-CeeE
Confidence 4677788999864 45888888 6642 2357999999999999987654 366777774 8888
Q ss_pred ecCCccCHHHHHHHHHHHhccc
Q 012474 402 HLERKFERREIETAIRRVTVEA 423 (463)
Q Consensus 402 ~l~~~~t~~~l~~~i~~~l~~~ 423 (463)
.++. -+.+++.++|.++++|+
T Consensus 317 ~~~~-~d~~~l~~~i~~l~~~~ 337 (367)
T cd05844 317 LVPE-GDVAALAAALGRLLADP 337 (367)
T ss_pred EECC-CCHHHHHHHHHHHHcCH
Confidence 7775 68899999999999983
No 66
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.99 E-value=6.9e-08 Score=90.34 Aligned_cols=301 Identities=15% Similarity=0.082 Sum_probs=157.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCC-CCCCCCCCceEEeCCCCCCCcccccccHHHHHHHHHHhc
Q 012474 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNS-PNPSNYPHFSFNSISESLWESEVSTENAISLLTVLNDKC 93 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (463)
|||.+--.-. .|+.-+..++++|.++||+|.+.+-+... ...-+..|+.+..+...-. +....+.....+
T Consensus 1 MkIwiDi~~p-~hvhfFk~~I~eL~~~GheV~it~R~~~~~~~LL~~yg~~y~~iG~~g~-------~~~~Kl~~~~~R- 71 (335)
T PF04007_consen 1 MKIWIDITHP-AHVHFFKNIIRELEKRGHEVLITARDKDETEELLDLYGIDYIVIGKHGD-------SLYGKLLESIER- 71 (335)
T ss_pred CeEEEECCCc-hHHHHHHHHHHHHHhCCCEEEEEEeccchHHHHHHHcCCCeEEEcCCCC-------CHHHHHHHHHHH-
Confidence 5666544433 59999999999999999999998876432 1122335788888774221 111111111111
Q ss_pred CchHHHHHHHHHhCCCCCCCceEEEeCCchhhHHHHHHHcCCCeEEEeCchhHHHHHHHHHHHHHHhccccccccCCCCC
Q 012474 94 VVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYLAEQVSFSSDS 173 (463)
Q Consensus 94 ~~~l~~~l~~l~~~~~~~~~pD~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 173 (463)
...+++.+.+ .+||++|+- .+..+..+|.-+|+|+|.+.-........ .-..|.. ..
T Consensus 72 ---~~~l~~~~~~-----~~pDv~is~-~s~~a~~va~~lgiP~I~f~D~e~a~~~~---------~Lt~Pla----~~- 128 (335)
T PF04007_consen 72 ---QYKLLKLIKK-----FKPDVAISF-GSPEAARVAFGLGIPSIVFNDTEHAIAQN---------RLTLPLA----DV- 128 (335)
T ss_pred ---HHHHHHHHHh-----hCCCEEEec-CcHHHHHHHHHhCCCeEEEecCchhhccc---------eeehhcC----Ce-
Confidence 1123333333 679999976 45667889999999999987763321100 0011111 00
Q ss_pred CCccccCCCCCCCcCCCCccccCCCchHHHHHHHHHhhccCCceEE-EcchhhhhHHHHHHhhhcCCCCccccccccccc
Q 012474 174 QLEKPVTELPPLRVKDIPIIVTHDTRNFHQLISAVVSKTKACSGLI-WNSFEDLEQTELTRLHKDFPIPMFPIGPFHKYC 252 (463)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~s~~~le~~~~~~~~~~~~~~v~~vGpl~~~~ 252 (463)
.. .|... ....+. ++ -.+ +.+. ++...++ .|+-|+.+
T Consensus 129 ---i~-----------~P~~~---~~~~~~---~~---G~~-~~i~~y~G~~E~----------------ayl~~F~P-- 166 (335)
T PF04007_consen 129 ---II-----------TPEAI---PKEFLK---RF---GAK-NQIRTYNGYKEL----------------AYLHPFKP-- 166 (335)
T ss_pred ---eE-----------CCccc---CHHHHH---hc---CCc-CCEEEECCeeeE----------------EeecCCCC--
Confidence 00 00000 000000 00 000 0111 2222211 22222111
Q ss_pred cccCCCcccccchhccccccCCCCeEEEEecCCccc----CCHHHHHHHHHHHhcCCCceEEEEcCCCCCCCccCCCCch
Q 012474 253 LASSSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVV----VNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPK 328 (463)
Q Consensus 253 ~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~----~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~ 328 (463)
+.+..+-+.. .+++.|++-+.+..+ -....+..+++.+++.+..+|....... .++
T Consensus 167 ----------d~~vl~~lg~-~~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~~---------~~~ 226 (335)
T PF04007_consen 167 ----------DPEVLKELGL-DDEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYED---------QRE 226 (335)
T ss_pred ----------ChhHHHHcCC-CCCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCcc---------hhh
Confidence 1112222321 245677777766433 2234567788999888776444433321 111
Q ss_pred hHHHHhcCCCcee-eccChhhhhcCCCCcccccccChhhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCCcc
Q 012474 329 GFLEMLDGRGHIV-KWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKF 407 (463)
Q Consensus 329 ~~~~~~~~~~~~~-~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~ 407 (463)
-+ +.. ++.+. .-+...+||.++++ +|+-|| ....||...|+|.|.+ +.++-...-+.+.+. |. ... ..
T Consensus 227 ~~-~~~--~~~i~~~~vd~~~Ll~~a~l--~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~~~-Gl--l~~-~~ 295 (335)
T PF04007_consen 227 LF-EKY--GVIIPPEPVDGLDLLYYADL--VIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLIEK-GL--LYH-ST 295 (335)
T ss_pred HH-hcc--CccccCCCCCHHHHHHhcCE--EEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHHHC-CC--eEe-cC
Confidence 11 111 12222 44555689999999 998877 7889999999999975 233422334556663 65 222 35
Q ss_pred CHHHHHHHHHHHh
Q 012474 408 ERREIETAIRRVT 420 (463)
Q Consensus 408 t~~~l~~~i~~~l 420 (463)
+++++.+.+.+.+
T Consensus 296 ~~~ei~~~v~~~~ 308 (335)
T PF04007_consen 296 DPDEIVEYVRKNL 308 (335)
T ss_pred CHHHHHHHHHHhh
Confidence 6777777555544
No 67
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.98 E-value=6.6e-07 Score=87.81 Aligned_cols=112 Identities=13% Similarity=0.088 Sum_probs=71.5
Q ss_pred cCCCceeeccCh---hhhhcCCCCccccc---ccCh-hhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCCcc
Q 012474 335 DGRGHIVKWAPQ---QEVLAHPAVGGFWT---HNGW-NSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKF 407 (463)
Q Consensus 335 ~~~~~~~~~vpq---~~lL~~~~~~~~I~---hgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~ 407 (463)
.+++.+.+|+|+ ..+++.+++ +|. +-|. .++.||+++|+|+|+.+..+ ....+.+ |.+.... -
T Consensus 249 ~~~v~~~G~~~~~~~~~~l~~ad~--~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i~~--~~~~~~~--~ 318 (398)
T cd03796 249 QDRVELLGAVPHERVRDVLVQGHI--FLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVLPP--DMILLAE--P 318 (398)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhheeC--CceeecC--C
Confidence 356788899985 457888888 764 2244 49999999999999877643 2334443 4343332 3
Q ss_pred CHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012474 408 ERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILS 462 (463)
Q Consensus 408 t~~~l~~~i~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 462 (463)
+.+++.+++.+++++.. -+. .+.+..+....+.-+.+..++++++..++
T Consensus 319 ~~~~l~~~l~~~l~~~~---~~~---~~~~~~~~~~~~~fs~~~~~~~~~~~y~~ 367 (398)
T cd03796 319 DVESIVRKLEEAISILR---TGK---HDPWSFHNRVKKMYSWEDVAKRTEKVYDR 367 (398)
T ss_pred CHHHHHHHHHHHHhChh---hhh---hHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 78999999999998621 110 12222222233566777777777776553
No 68
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.95 E-value=2.1e-06 Score=82.84 Aligned_cols=106 Identities=16% Similarity=0.124 Sum_probs=68.1
Q ss_pred cCCCceeeccCh---hhhhcCCCCccccccc---C-hhhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCCcc
Q 012474 335 DGRGHIVKWAPQ---QEVLAHPAVGGFWTHN---G-WNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKF 407 (463)
Q Consensus 335 ~~~~~~~~~vpq---~~lL~~~~~~~~I~hg---G-~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~ 407 (463)
.+++.+.+|+++ ..++..+++ +|.-. | .+++.||+++|+|+|+.+.. .....+.. +.|...+.
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv--~v~ps~~e~~~~~~~Eama~G~PvI~~~~~----~~~~~~~~--~~~~~~~~-- 330 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADL--FVLPSHSENFGIVVAEALACGTPVVTTDKV----PWQELIEY--GCGWVVDD-- 330 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCE--EEeccccCCCCcHHHHHHhcCCCEEEcCCC----CHHHHhhc--CceEEeCC--
Confidence 467788899995 346788888 65432 2 46899999999999997643 23333333 66666554
Q ss_pred CHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHH
Q 012474 408 ERREIETAIRRVTVEAE-GQEMRERIMHLKEKLELSLLEAGSSYQSLERLV 457 (463)
Q Consensus 408 t~~~l~~~i~~~l~~~~-~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~ 457 (463)
+.+++.++|.+++++++ ...+.+++++. ..+.-+.++.+++++
T Consensus 331 ~~~~~~~~i~~l~~~~~~~~~~~~~~~~~-------~~~~~s~~~~~~~~~ 374 (375)
T cd03821 331 DVDALAAALRRALELPQRLKAMGENGRAL-------VEERFSWTAIAQQLL 374 (375)
T ss_pred ChHHHHHHHHHHHhCHHHHHHHHHHHHHH-------HHHhcCHHHHHHHhh
Confidence 45999999999999832 23333333333 124455666666554
No 69
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.95 E-value=1e-06 Score=84.96 Aligned_cols=109 Identities=22% Similarity=0.236 Sum_probs=73.9
Q ss_pred cCCCcee-eccCh---hhhhcCCCCccccc----c--cChhhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecC
Q 012474 335 DGRGHIV-KWAPQ---QEVLAHPAVGGFWT----H--NGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLE 404 (463)
Q Consensus 335 ~~~~~~~-~~vpq---~~lL~~~~~~~~I~----h--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~ 404 (463)
.+++.+. .|+|+ ..++..+++ +|. - |..+++.||+++|+|+|+.+..+ ...+... +.|...+
T Consensus 246 ~~~v~~~~~~~~~~~~~~~~~~ad~--~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~-~~g~~~~ 317 (366)
T cd03822 246 ADRVIFINRYLPDEELPELFSAADV--VVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDG-GTGLLVP 317 (366)
T ss_pred CCcEEEecCcCCHHHHHHHHhhcCE--EEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeC-CCcEEEc
Confidence 3566666 45885 467888888 762 2 33468999999999999877544 3445553 7777776
Q ss_pred CccCHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 012474 405 RKFERREIETAIRRVTVEAE-GQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHI 460 (463)
Q Consensus 405 ~~~t~~~l~~~i~~~l~~~~-~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 460 (463)
. -+.+++.++|.++++|++ ...+++++++..+ + -+.++.++++.+.+
T Consensus 318 ~-~d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~-------~-~s~~~~~~~~~~~~ 365 (366)
T cd03822 318 P-GDPAALAEAIRRLLADPELAQALRARAREYAR-------A-MSWERVAERYLRLL 365 (366)
T ss_pred C-CCHHHHHHHHHHHHcChHHHHHHHHHHHHHHh-------h-CCHHHHHHHHHHHh
Confidence 5 568999999999999832 3334444444333 3 45777777777665
No 70
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.94 E-value=2.1e-06 Score=90.65 Aligned_cols=395 Identities=13% Similarity=0.125 Sum_probs=199.2
Q ss_pred CCCCcEEEEEcCCC---------------ccCHHHHHHHHHHHHhCC--CeEEEEeCCCCCCCC----------------
Q 012474 11 QKKGRRVILFPLPL---------------QGHINPMLQLASILYSKG--FSITIIHTNFNSPNP---------------- 57 (463)
Q Consensus 11 ~~~~~~il~~~~~~---------------~GH~~p~l~La~~L~~rG--h~Vt~~~~~~~~~~~---------------- 57 (463)
..++|.|+++..-+ .|+..=.+.||++|+++| |+|.++|-....+..
T Consensus 166 ~~~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~~~~~~~~y~~p~e~~~~~~~ 245 (1050)
T TIGR02468 166 KEKKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVSSPDVDWSYGEPTEMLTPRSS 245 (1050)
T ss_pred ccCceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcCccccccccCCcccccccccc
Confidence 35688888876432 245556789999999998 899999974321110
Q ss_pred -------CCCCCceEEeCCCCCCCcccccccHHHHHHHHHHhcCchHHH----HHHHHHhCCCCCCCceEEEeCCch--h
Q 012474 58 -------SNYPHFSFNSISESLWESEVSTENAISLLTVLNDKCVVPFQD----CLAKLISNGDQEEPVTCLITDAIW--H 124 (463)
Q Consensus 58 -------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~l~~l~~~~~~~~~pD~VI~D~~~--~ 124 (463)
...+|+..+.+|.+-.........++..+..|...+...+.. +.+++..... ..||+|-..... .
T Consensus 246 ~~~~~~~~~~~g~rIvRip~GP~~~~l~Ke~L~~~l~ef~d~~l~~~~~~~~~~~~~~~~~~~--~~pDvIHaHyw~sG~ 323 (1050)
T TIGR02468 246 ENDGDEMGESSGAYIIRIPFGPRDKYIPKEELWPYIPEFVDGALSHIVNMSKVLGEQIGSGHP--VWPYVIHGHYADAGD 323 (1050)
T ss_pred ccccccccCCCCeEEEEeccCCCCCCcCHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhccccC--CCCCEEEECcchHHH
Confidence 011367777777543322333334444444444333222221 1122211101 349999988532 5
Q ss_pred hHHHHHHHcCCCeEEEeCchhHHHHHHHHHHHHHHhccccccccCCCCCCCccccCCCCCCCcCCCCccccCCCchHHHH
Q 012474 125 FAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYLAEQVSFSSDSQLEKPVTELPPLRVKDIPIIVTHDTRNFHQL 204 (463)
Q Consensus 125 ~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (463)
.+..+++.+|||.|.+..+-...- ...+...+..+. ..+. ....+...
T Consensus 324 aa~~L~~~lgVP~V~T~HSLgr~K-----~~~ll~~g~~~~-----------~~~~----------------~~y~~~~R 371 (1050)
T TIGR02468 324 SAALLSGALNVPMVLTGHSLGRDK-----LEQLLKQGRMSK-----------EEIN----------------STYKIMRR 371 (1050)
T ss_pred HHHHHHHhhCCCEEEECccchhhh-----hhhhcccccccc-----------cccc----------------cccchHHH
Confidence 567888899999988777621100 000000000000 0000 00001111
Q ss_pred HHHHHhhccCCceEEEcchhhhhHHHHHH--------------hhhc------CCCC--cccccc----cccccccc-C-
Q 012474 205 ISAVVSKTKACSGLIWNSFEDLEQTELTR--------------LHKD------FPIP--MFPIGP----FHKYCLAS-S- 256 (463)
Q Consensus 205 ~~~~~~~~~~~~~~l~~s~~~le~~~~~~--------------~~~~------~~~~--v~~vGp----l~~~~~~~-~- 256 (463)
+..-...+..++.++.+|..+-+.-+-.+ ++.. +.+. |++-|- +.+..... +
T Consensus 372 i~~Ee~~l~~Ad~VIasT~qE~~eq~~lY~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~ 451 (1050)
T TIGR02468 372 IEAEELSLDASEIVITSTRQEIEEQWGLYDGFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGE 451 (1050)
T ss_pred HHHHHHHHHhcCEEEEeCHHHHHHHHHHhccCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccch
Confidence 11223346778888888888776321100 0000 0112 444441 11110000 0
Q ss_pred ---------CCcccccchhccccccCCCCeEEEEecCCcccCCHHHHHHHHHHHhcCC-----CceEEEEcCCCCCCCcc
Q 012474 257 ---------SSLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSR-----VPFLWVVRPGLVPGVEW 322 (463)
Q Consensus 257 ---------~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~-----~~~v~~~~~~~~~~~~~ 322 (463)
....+.+..+..|+.. +++ +++++.|... +.+.+..+++|+..+. ..+.++++.+... +.
T Consensus 452 ~~~~~~~~~~~~~~~~~~l~r~~~~-pdk-pvIL~VGRL~--p~KGi~~LIeAf~~L~~l~~~~nL~LIiG~gdd~--d~ 525 (1050)
T TIGR02468 452 TEGNEEHPAKPDPPIWSEIMRFFTN-PRK-PMILALARPD--PKKNITTLVKAFGECRPLRELANLTLIMGNRDDI--DE 525 (1050)
T ss_pred hcccccccccccchhhHHHHhhccc-CCC-cEEEEEcCCc--cccCHHHHHHHHHHhHhhccCCCEEEEEecCchh--hh
Confidence 0001112345566654 233 4455566654 3444666666665542 2444445432100 00
Q ss_pred CC----CCchhHH---HH--hcCCCceeeccChhh---hhcCC----CCcccccc---cCh-hhHHHHHhhCCceecccc
Q 012474 323 LE----PLPKGFL---EM--LDGRGHIVKWAPQQE---VLAHP----AVGGFWTH---NGW-NSTLESICEGVPMICQPC 382 (463)
Q Consensus 323 ~~----~~~~~~~---~~--~~~~~~~~~~vpq~~---lL~~~----~~~~~I~h---gG~-~s~~eal~~GvP~l~~P~ 382 (463)
.. +.-..+. ++ +.++|.+.+++++.+ ++..+ ++ ||.- =|. .++.||+++|+|+|....
T Consensus 526 l~~~~~~~l~~L~~li~~lgL~g~V~FlG~v~~edvp~lYr~Ad~s~DV--FV~PS~~EgFGLvlLEAMAcGlPVVASdv 603 (1050)
T TIGR02468 526 MSSGSSSVLTSVLKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGV--FINPAFIEPFGLTLIEAAAHGLPMVATKN 603 (1050)
T ss_pred hhccchHHHHHHHHHHHHhCCCCeEEecCCCCHHHHHHHHHHhhhcCCe--eeCCcccCCCCHHHHHHHHhCCCEEEeCC
Confidence 00 0001111 12 236677778887644 56555 35 7764 233 699999999999998864
Q ss_pred ccchhhhHHHHHHHhhceeecCCccCHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 012474 383 FGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVEAE-GQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHIL 461 (463)
Q Consensus 383 ~~DQ~~na~rv~~~~G~G~~l~~~~t~~~l~~~i~~~l~~~~-~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 461 (463)
.+ ....++.. .-|..++. -++++|+++|.++++|++ +..|.+++++..+ ..+-...++++++.+.
T Consensus 604 GG----~~EII~~g-~nGlLVdP-~D~eaLA~AL~~LL~Dpelr~~m~~~gr~~v~--------~FSWe~ia~~yl~~i~ 669 (1050)
T TIGR02468 604 GG----PVDIHRVL-DNGLLVDP-HDQQAIADALLKLVADKQLWAECRQNGLKNIH--------LFSWPEHCKTYLSRIA 669 (1050)
T ss_pred CC----cHHHhccC-CcEEEECC-CCHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH--------HCCHHHHHHHHHHHHH
Confidence 32 33444442 56777775 789999999999999843 3344444443322 2455666666666554
No 71
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.92 E-value=9.7e-07 Score=85.03 Aligned_cols=148 Identities=16% Similarity=0.095 Sum_probs=84.8
Q ss_pred CeEEEEecCCccc-CCHHHHHHHHHHHhcC--CCceEEEEcCCCCCCCccCCCCchhHH---H--HhcCCCceeeccCh-
Q 012474 276 KSVMYVSFGSIVV-VNVTEFLEIAWGLANS--RVPFLWVVRPGLVPGVEWLEPLPKGFL---E--MLDGRGHIVKWAPQ- 346 (463)
Q Consensus 276 ~~~v~vs~Gs~~~-~~~~~~~~~~~al~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~~~~~~vpq- 346 (463)
+..+++..|.... -..+.+..++..+... +.+++++-.+.. .+...+.+. + ...+++.+.+|.++
T Consensus 184 ~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~~~------~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~ 257 (355)
T cd03819 184 GKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDAQG------RRFYYAELLELIKRLGLQDRVTFVGHCSDM 257 (355)
T ss_pred CceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECCcc------cchHHHHHHHHHHHcCCcceEEEcCCcccH
Confidence 4466777777654 2344444555555543 233333332211 011111111 1 12356778888654
Q ss_pred hhhhcCCCCcccccc----cC-hhhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCCccCHHHHHHHHHHHhc
Q 012474 347 QEVLAHPAVGGFWTH----NG-WNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTV 421 (463)
Q Consensus 347 ~~lL~~~~~~~~I~h----gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~t~~~l~~~i~~~l~ 421 (463)
..++..+++ +|.= -| .+++.||+++|+|+|+.-. ......+... +.|..++. -+.+++.++|..++.
T Consensus 258 ~~~l~~ad~--~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~----~~~~e~i~~~-~~g~~~~~-~~~~~l~~~i~~~~~ 329 (355)
T cd03819 258 PAAYALADI--VVSASTEPEAFGRTAVEAQAMGRPVIASDH----GGARETVRPG-ETGLLVPP-GDAEALAQALDQILS 329 (355)
T ss_pred HHHHHhCCE--EEecCCCCCCCchHHHHHHhcCCCEEEcCC----CCcHHHHhCC-CceEEeCC-CCHHHHHHHHHHHHh
Confidence 678888998 5532 23 3699999999999987653 2345566663 57877765 789999999976664
Q ss_pred -cch-HHHHHHHHHHHHH
Q 012474 422 -EAE-GQEMRERIMHLKE 437 (463)
Q Consensus 422 -~~~-~~~~~~~a~~~~~ 437 (463)
+++ ...+++++++..+
T Consensus 330 ~~~~~~~~~~~~a~~~~~ 347 (355)
T cd03819 330 LLPEGRAKMFAKARMCVE 347 (355)
T ss_pred hCHHHHHHHHHHHHHHHH
Confidence 422 3344444444443
No 72
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.91 E-value=1.9e-06 Score=84.30 Aligned_cols=90 Identities=13% Similarity=0.096 Sum_probs=62.9
Q ss_pred cCCCceeeccChh---hhhcCCCCcccccc---cC-hhhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCCcc
Q 012474 335 DGRGHIVKWAPQQ---EVLAHPAVGGFWTH---NG-WNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKF 407 (463)
Q Consensus 335 ~~~~~~~~~vpq~---~lL~~~~~~~~I~h---gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~ 407 (463)
.+++.+.+++|+. .++..+++ ++.. -| -.++.||+++|+|+|+.-.. .....+... +.|...+ .
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad~--~l~~s~~E~~g~~~lEAma~G~PvI~s~~~----~~~e~i~~~-~~g~~~~--~ 349 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSARA--LLYTPSNEHFGIVPLEAMYAGKPVIACNSG----GPLETVVDG-ETGFLCE--P 349 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCeE--EEECCCcCCCCchHHHHHHcCCCEEEECCC----CcHHHhccC-CceEEeC--C
Confidence 4678889999975 57888888 6632 22 25789999999999987543 334556663 6677664 3
Q ss_pred CHHHHHHHHHHHhccch-HHHHHHHHH
Q 012474 408 ERREIETAIRRVTVEAE-GQEMRERIM 433 (463)
Q Consensus 408 t~~~l~~~i~~~l~~~~-~~~~~~~a~ 433 (463)
+.+++.++|.+++++++ ...+.++++
T Consensus 350 ~~~~~a~~i~~l~~~~~~~~~~~~~a~ 376 (392)
T cd03805 350 TPEEFAEAMLKLANDPDLADRMGAAGR 376 (392)
T ss_pred CHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 78999999999999842 233444443
No 73
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.86 E-value=4.6e-07 Score=87.74 Aligned_cols=159 Identities=15% Similarity=0.093 Sum_probs=96.5
Q ss_pred CCeEEEEecCCcccC-CHHHHHHHHHHHhcCCCc-eEEEEcCCCCCCCccCCCCchhHHHHh--cCCCceeeccCh---h
Q 012474 275 AKSVMYVSFGSIVVV-NVTEFLEIAWGLANSRVP-FLWVVRPGLVPGVEWLEPLPKGFLEML--DGRGHIVKWAPQ---Q 347 (463)
Q Consensus 275 ~~~~v~vs~Gs~~~~-~~~~~~~~~~al~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~vpq---~ 347 (463)
+++.|++++|..... ..+.+..++++++.+..+ +.++..+.. .. ...+-+...+.. .+++.+.++.++ .
T Consensus 197 ~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~-~~---~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~ 272 (363)
T cd03786 197 PKKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHP-RT---RPRIREAGLEFLGHHPNVLLISPLGYLYFL 272 (363)
T ss_pred CCCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCC-Ch---HHHHHHHHHhhccCCCCEEEECCcCHHHHH
Confidence 456788888876542 455677788888765432 444443221 00 011111111111 356666665553 3
Q ss_pred hhhcCCCCcccccccChhhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCCccCHHHHHHHHHHHhccchHHH
Q 012474 348 EVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVEAEGQE 427 (463)
Q Consensus 348 ~lL~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~t~~~l~~~i~~~l~~~~~~~ 427 (463)
.++..+++ ||+..| |.+.||+++|+|+|+++.. |. +..+.+. |++..+. -+.++|.++|.+++++ +.
T Consensus 273 ~l~~~ad~--~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~~~-g~~~~~~--~~~~~i~~~i~~ll~~---~~ 339 (363)
T cd03786 273 LLLKNADL--VLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETVES-GTNVLVG--TDPEAILAAIEKLLSD---EF 339 (363)
T ss_pred HHHHcCcE--EEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhhhe-eeEEecC--CCHHHHHHHHHHHhcC---ch
Confidence 56778899 999999 7888999999999998743 22 3345553 8776554 2589999999999998 33
Q ss_pred HHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 012474 428 MRERIMHLKEKLELSLLEAGSSYQSLERLVDHI 460 (463)
Q Consensus 428 ~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 460 (463)
.++ +++ . ...+..++.+++++.|
T Consensus 340 ~~~---~~~--~-----~~~~~~~a~~~I~~~l 362 (363)
T cd03786 340 AYS---LMS--I-----NPYGDGNASERIVEIL 362 (363)
T ss_pred hhh---cCC--C-----CCCCCCHHHHHHHHHh
Confidence 222 222 1 2334456677777765
No 74
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.85 E-value=8.1e-07 Score=84.77 Aligned_cols=79 Identities=16% Similarity=0.219 Sum_probs=58.0
Q ss_pred CCCceeeccCh-hhhhcCCCCcccccc----cChhhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCCccCHH
Q 012474 336 GRGHIVKWAPQ-QEVLAHPAVGGFWTH----NGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERR 410 (463)
Q Consensus 336 ~~~~~~~~vpq-~~lL~~~~~~~~I~h----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~t~~ 410 (463)
+++.+.+++++ .+++..+++ +|.- |.-+++.||+++|+|+|+.... .....+++. +.|...+. -+.+
T Consensus 246 ~~v~~~g~~~~~~~~~~~~d~--~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~~~-~~g~~~~~-~~~~ 317 (353)
T cd03811 246 DRVHFLGFQSNPYPYLKAADL--FVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREILEDG-ENGLLVPV-GDEA 317 (353)
T ss_pred ccEEEecccCCHHHHHHhCCE--EEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHhcCC-CceEEECC-CCHH
Confidence 56677788775 678999998 7632 3347899999999999985433 556777774 88888775 6677
Q ss_pred HH---HHHHHHHhcc
Q 012474 411 EI---ETAIRRVTVE 422 (463)
Q Consensus 411 ~l---~~~i~~~l~~ 422 (463)
.+ .+.+..++.+
T Consensus 318 ~~~~~~~~i~~~~~~ 332 (353)
T cd03811 318 ALAAAALALLDLLLD 332 (353)
T ss_pred HHHHHHHHHHhccCC
Confidence 77 5666666666
No 75
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.84 E-value=2.9e-06 Score=84.25 Aligned_cols=112 Identities=13% Similarity=0.107 Sum_probs=74.9
Q ss_pred cCCCceeeccChhh---hhcCC----CCccccccc---C-hhhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeec
Q 012474 335 DGRGHIVKWAPQQE---VLAHP----AVGGFWTHN---G-WNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHL 403 (463)
Q Consensus 335 ~~~~~~~~~vpq~~---lL~~~----~~~~~I~hg---G-~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l 403 (463)
.+++.+.+++++.+ +++.+ ++ ||.-. | -.++.||+++|+|+|+.... .....+... ..|..+
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~Dv--~v~pS~~E~fg~~~lEAma~G~PvV~s~~g----g~~eiv~~~-~~G~lv 388 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRGI--FVNPALTEPFGLTLLEAAACGLPIVATDDG----GPRDIIANC-RNGLLV 388 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCCE--EecccccCCcccHHHHHHHhCCCEEEeCCC----CcHHHhcCC-CcEEEe
Confidence 46667777777654 46544 55 77643 3 35999999999999987643 345555553 567777
Q ss_pred CCccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 012474 404 ERKFERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHI 460 (463)
Q Consensus 404 ~~~~t~~~l~~~i~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 460 (463)
+. -+++++.++|.++++| +..+ +++++..++...+.-+-+..++++.+.+
T Consensus 389 ~~-~d~~~la~~i~~ll~~---~~~~---~~~~~~a~~~~~~~fsw~~~~~~~~~l~ 438 (439)
T TIGR02472 389 DV-LDLEAIASALEDALSD---SSQW---QLWSRNGIEGVRRHYSWDAHVEKYLRIL 438 (439)
T ss_pred CC-CCHHHHHHHHHHHHhC---HHHH---HHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 65 7899999999999998 3322 3344433333335566777777777665
No 76
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.80 E-value=7.3e-06 Score=78.84 Aligned_cols=81 Identities=19% Similarity=0.213 Sum_probs=60.4
Q ss_pred cCCCceeeccCh---hhhhcCCCCccccc----------ccChhhHHHHHhhCCceeccccccchhhhHHHHHHHhhcee
Q 012474 335 DGRGHIVKWAPQ---QEVLAHPAVGGFWT----------HNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGL 401 (463)
Q Consensus 335 ~~~~~~~~~vpq---~~lL~~~~~~~~I~----------hgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~ 401 (463)
.+++.+.+++|+ ..++..+++ +|. -|.-+++.||+++|+|+|+.+.. .....++.. ..|.
T Consensus 235 ~~~v~~~g~~~~~~l~~~~~~adi--~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~~~i~~~-~~g~ 307 (355)
T cd03799 235 EDRVTLLGAKSQEEVRELLRAADL--FVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVS----GIPELVEDG-ETGL 307 (355)
T ss_pred CCeEEECCcCChHHHHHHHHhCCE--EEecceecCCCCccCccHHHHHHHHcCCCEEecCCC----CcchhhhCC-CceE
Confidence 467788899975 457778888 666 23347999999999999986643 233455552 4787
Q ss_pred ecCCccCHHHHHHHHHHHhccc
Q 012474 402 HLERKFERREIETAIRRVTVEA 423 (463)
Q Consensus 402 ~l~~~~t~~~l~~~i~~~l~~~ 423 (463)
..+. -+.+++.++|.+++.|+
T Consensus 308 ~~~~-~~~~~l~~~i~~~~~~~ 328 (355)
T cd03799 308 LVPP-GDPEALADAIERLLDDP 328 (355)
T ss_pred EeCC-CCHHHHHHHHHHHHhCH
Confidence 7765 68999999999999984
No 77
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.80 E-value=4.9e-06 Score=80.33 Aligned_cols=155 Identities=16% Similarity=0.156 Sum_probs=86.6
Q ss_pred EEecCCcccCCHHHHHHHHHHHhcCC--CceEEEEcCCCCCCCccCCCCchhHH--HHhcCCCceeeccChh---hhhcC
Q 012474 280 YVSFGSIVVVNVTEFLEIAWGLANSR--VPFLWVVRPGLVPGVEWLEPLPKGFL--EMLDGRGHIVKWAPQQ---EVLAH 352 (463)
Q Consensus 280 ~vs~Gs~~~~~~~~~~~~~~al~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~vpq~---~lL~~ 352 (463)
++..|+.. +...+..++++++++. .+++ .++.... ....-+.+. ....+++.+.+++++. +++..
T Consensus 196 i~~~G~~~--~~Kg~~~li~a~~~l~~~~~l~-ivG~~~~-----~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~~~ 267 (363)
T cd04955 196 YLLVGRIV--PENNIDDLIEAFSKSNSGKKLV-IVGNADH-----NTPYGKLLKEKAAADPRIIFVGPIYDQELLELLRY 267 (363)
T ss_pred EEEEeccc--ccCCHHHHHHHHHhhccCceEE-EEcCCCC-----cchHHHHHHHHhCCCCcEEEccccChHHHHHHHHh
Confidence 44567765 3344556667776654 3433 3333210 111112222 1234677888999975 45666
Q ss_pred CCCcccccccCh-----hhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCCccCHHHHHHHHHHHhccchHHH
Q 012474 353 PAVGGFWTHNGW-----NSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVEAEGQE 427 (463)
Q Consensus 353 ~~~~~~I~hgG~-----~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~t~~~l~~~i~~~l~~~~~~~ 427 (463)
+++ ++-+.-. +++.||+++|+|+|+....+ +...++.. |... +. .+.+.++|.++++| ++
T Consensus 268 ad~--~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~----~~e~~~~~-g~~~--~~---~~~l~~~i~~l~~~---~~ 332 (363)
T cd04955 268 AAL--FYLHGHSVGGTNPSLLEAMAYGCPVLASDNPF----NREVLGDK-AIYF--KV---GDDLASLLEELEAD---PE 332 (363)
T ss_pred CCE--EEeCCccCCCCChHHHHHHHcCCCEEEecCCc----cceeecCC-eeEe--cC---chHHHHHHHHHHhC---HH
Confidence 776 6554322 57999999999999876442 12222222 3332 22 11299999999998 32
Q ss_pred HHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 012474 428 MRERIMHLKEKLELSLLEAGSSYQSLERLVDHI 460 (463)
Q Consensus 428 ~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 460 (463)
.+ .++++..++...+.-+.+..++++++.+
T Consensus 333 ~~---~~~~~~~~~~~~~~fs~~~~~~~~~~~y 362 (363)
T cd04955 333 EV---SAMAKAARERIREKYTWEKIADQYEELY 362 (363)
T ss_pred HH---HHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 22 2233333333334567777888877765
No 78
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.79 E-value=1.8e-06 Score=82.39 Aligned_cols=152 Identities=11% Similarity=0.042 Sum_probs=93.3
Q ss_pred EEEecCCcccCCHHHHHHHHHHHhcCCCceEEEEcCCCCCCCccCCCCchhHHHH--hcCCCceeeccChh---hhhcCC
Q 012474 279 MYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEM--LDGRGHIVKWAPQQ---EVLAHP 353 (463)
Q Consensus 279 v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~vpq~---~lL~~~ 353 (463)
+.+..|... ..+....++++++..+.++++.-.+.. .+..-....+. ..+++.+.+++++. .+++.+
T Consensus 173 ~i~~~Gr~~--~~Kg~~~li~~~~~~~~~l~i~G~~~~------~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~~~~ 244 (335)
T cd03802 173 YLLFLGRIS--PEKGPHLAIRAARRAGIPLKLAGPVSD------PDYFYREIAPELLDGPDIEYLGEVGGAEKAELLGNA 244 (335)
T ss_pred EEEEEEeec--cccCHHHHHHHHHhcCCeEEEEeCCCC------HHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHHHhC
Confidence 444556663 344456677788877777665443321 01011111122 25778888999974 468888
Q ss_pred CCccccc----ccCh-hhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCCccCHHHHHHHHHHHhccchHHHH
Q 012474 354 AVGGFWT----HNGW-NSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVEAEGQEM 428 (463)
Q Consensus 354 ~~~~~I~----hgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~t~~~l~~~i~~~l~~~~~~~~ 428 (463)
++ ++. +-|. .++.||+++|+|+|+.... .....+... ..|...+. .+++.++|.+++.. .
T Consensus 245 d~--~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~----~~~e~i~~~-~~g~l~~~---~~~l~~~l~~l~~~---~-- 309 (335)
T cd03802 245 RA--LLFPILWEEPFGLVMIEAMACGTPVIAFRRG----AVPEVVEDG-VTGFLVDS---VEELAAAVARADRL---D-- 309 (335)
T ss_pred cE--EEeCCcccCCcchHHHHHHhcCCCEEEeCCC----CchhheeCC-CcEEEeCC---HHHHHHHHHHHhcc---H--
Confidence 88 553 2343 5899999999999977653 334455542 36776664 89999999998765 1
Q ss_pred HHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 012474 429 RERIMHLKEKLELSLLEAGSSYQSLERLVDHI 460 (463)
Q Consensus 429 ~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 460 (463)
++++++. +. +..+.+..++++++..
T Consensus 310 ~~~~~~~---~~----~~~s~~~~~~~~~~~y 334 (335)
T cd03802 310 RAACRRR---AE----RRFSAARMVDDYLALY 334 (335)
T ss_pred HHHHHHH---HH----HhCCHHHHHHHHHHHh
Confidence 2233222 22 4567788888877754
No 79
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.77 E-value=6.9e-06 Score=80.29 Aligned_cols=163 Identities=15% Similarity=0.060 Sum_probs=95.5
Q ss_pred eEEEEecCCcccCCHHHHHHHHHHHhcC--CCceEEEEcCCCCCCCccCCCCchhHHHHh---c---CCCce-eeccCh-
Q 012474 277 SVMYVSFGSIVVVNVTEFLEIAWGLANS--RVPFLWVVRPGLVPGVEWLEPLPKGFLEML---D---GRGHI-VKWAPQ- 346 (463)
Q Consensus 277 ~~v~vs~Gs~~~~~~~~~~~~~~al~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~~~-~~~vpq- 346 (463)
.++++..|... +.+.+..++++++.+ +.++++..++... ..+-+.+.+.. . +++.. ..++++
T Consensus 201 ~~~i~~~Grl~--~~Kg~~~li~a~~~l~~~~~l~i~g~g~~~------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 272 (388)
T TIGR02149 201 RPYILFVGRIT--RQKGVPHLLDAVHYIPKDVQVVLCAGAPDT------PEVAEEVRQAVALLDRNRTGIIWINKMLPKE 272 (388)
T ss_pred ceEEEEEcccc--cccCHHHHHHHHHHHhhcCcEEEEeCCCCc------HHHHHHHHHHHHHhccccCceEEecCCCCHH
Confidence 34566667755 334455666666654 3455444433210 01112222211 1 22333 366774
Q ss_pred --hhhhcCCCCcccccc----cChhhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCCccCH------HHHHH
Q 012474 347 --QEVLAHPAVGGFWTH----NGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFER------REIET 414 (463)
Q Consensus 347 --~~lL~~~~~~~~I~h----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~t~------~~l~~ 414 (463)
..++..+++ +|.= |...++.||+++|+|+|+... ......++.. +.|..++. -+. +++.+
T Consensus 273 ~~~~~~~~aDv--~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i~~~-~~G~~~~~-~~~~~~~~~~~l~~ 344 (388)
T TIGR02149 273 ELVELLSNAEV--FVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVVVDG-ETGFLVPP-DNSDADGFQAELAK 344 (388)
T ss_pred HHHHHHHhCCE--EEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHhhCC-CceEEcCC-CCCcccchHHHHHH
Confidence 457888888 7742 223578999999999998654 3456667764 67888875 333 89999
Q ss_pred HHHHHhccch-HHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012474 415 AIRRVTVEAE-GQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILS 462 (463)
Q Consensus 415 ~i~~~l~~~~-~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 462 (463)
+|.++++|++ .+.+.+++++. ..+.-+.+..++++++.+++
T Consensus 345 ~i~~l~~~~~~~~~~~~~a~~~-------~~~~~s~~~~~~~~~~~y~~ 386 (388)
T TIGR02149 345 AINILLADPELAKKMGIAGRKR-------AEEEFSWGSIAKKTVEMYRK 386 (388)
T ss_pred HHHHHHhCHHHHHHHHHHHHHH-------HHHhCCHHHHHHHHHHHHHh
Confidence 9999998832 22333333332 22445678888888887765
No 80
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.77 E-value=7.2e-07 Score=86.44 Aligned_cols=157 Identities=13% Similarity=0.156 Sum_probs=91.3
Q ss_pred CeEEEEecCCcccCCHHHHHHHHHHHhcC-----CCceEEEEcCCCCCCCccCCCCchhHHHHh--cCCCceeeccCh--
Q 012474 276 KSVMYVSFGSIVVVNVTEFLEIAWGLANS-----RVPFLWVVRPGLVPGVEWLEPLPKGFLEML--DGRGHIVKWAPQ-- 346 (463)
Q Consensus 276 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~vpq-- 346 (463)
++.++++.+-... ..+.+..+++++.++ +.++++...++. + .-+.+.+.. .+++.+.+.+++
T Consensus 197 ~~~vl~~~hr~~~-~~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~----~----~~~~~~~~~~~~~~v~~~~~~~~~~ 267 (365)
T TIGR00236 197 KRYILLTLHRREN-VGEPLENIFKAIREIVEEFEDVQIVYPVHLNP----V----VREPLHKHLGDSKRVHLIEPLEYLD 267 (365)
T ss_pred CCEEEEecCchhh-hhhHHHHHHHHHHHHHHHCCCCEEEEECCCCh----H----HHHHHHHHhCCCCCEEEECCCChHH
Confidence 3466665543211 113466677766653 345555433221 0 111122222 246777776664
Q ss_pred -hhhhcCCCCcccccccChhhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCCccCHHHHHHHHHHHhccchH
Q 012474 347 -QEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVEAEG 425 (463)
Q Consensus 347 -~~lL~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~t~~~l~~~i~~~l~~~~~ 425 (463)
..++..+++ +|+..|. .+.||+++|+|+|.++-.++++. +... |.+..+. .++++|.+++.++++|
T Consensus 268 ~~~~l~~ad~--vv~~Sg~-~~~EA~a~g~PvI~~~~~~~~~e----~~~~-g~~~lv~--~d~~~i~~ai~~ll~~--- 334 (365)
T TIGR00236 268 FLNLAANSHL--ILTDSGG-VQEEAPSLGKPVLVLRDTTERPE----TVEA-GTNKLVG--TDKENITKAAKRLLTD--- 334 (365)
T ss_pred HHHHHHhCCE--EEECChh-HHHHHHHcCCCEEECCCCCCChH----HHhc-CceEEeC--CCHHHHHHHHHHHHhC---
Confidence 456778888 9998764 47999999999999976665542 3333 7776553 5889999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012474 426 QEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILS 462 (463)
Q Consensus 426 ~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 462 (463)
+..+++.. .... .-| ...+.+++++.|++
T Consensus 335 ~~~~~~~~---~~~~----~~g-~~~a~~ri~~~l~~ 363 (365)
T TIGR00236 335 PDEYKKMS---NASN----PYG-DGEASERIVEELLN 363 (365)
T ss_pred hHHHHHhh---hcCC----CCc-CchHHHHHHHHHHh
Confidence 55554332 2221 122 24555556655554
No 81
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.74 E-value=1.1e-05 Score=77.86 Aligned_cols=110 Identities=11% Similarity=0.056 Sum_probs=72.8
Q ss_pred CCCceeeccCh-hhhhcCCCCccccccc----ChhhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCCccCHH
Q 012474 336 GRGHIVKWAPQ-QEVLAHPAVGGFWTHN----GWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERR 410 (463)
Q Consensus 336 ~~~~~~~~vpq-~~lL~~~~~~~~I~hg----G~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~t~~ 410 (463)
+++.+.++..+ ..++..+++ +|.-. ..+++.||+++|+|+|+. |...+...++.. |... +. -+.+
T Consensus 245 ~~v~~~g~~~~~~~~~~~ad~--~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~~~-g~~~--~~-~~~~ 314 (360)
T cd04951 245 NRVKLLGLRDDIAAYYNAADL--FVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVGDS-GLIV--PI-SDPE 314 (360)
T ss_pred CcEEEecccccHHHHHHhhce--EEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEecCC-ceEe--CC-CCHH
Confidence 56777787765 678999988 66532 257899999999999874 445556666552 5544 33 6789
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 012474 411 EIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHIL 461 (463)
Q Consensus 411 ~l~~~i~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 461 (463)
++.++|.++++++ +.+++...+-+.... +.-+.+..++++.+..+
T Consensus 315 ~~~~~i~~ll~~~--~~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~y~ 359 (360)
T cd04951 315 ALANKIDEILKMS--GEERDIIGARRERIV----KKFSINSIVQQWLTLYT 359 (360)
T ss_pred HHHHHHHHHHhCC--HHHHHHHHHHHHHHH----HhcCHHHHHHHHHHHhh
Confidence 9999999998532 344443333233333 45667777777776654
No 82
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.74 E-value=1.9e-06 Score=83.32 Aligned_cols=133 Identities=16% Similarity=0.203 Sum_probs=80.0
Q ss_pred eEEEEecCCcccCCHHHHHHHHHHHhcCCCce-EEEEcCCCCCCCccCCCCchhHHHH--hcCCCceeeccCh-----hh
Q 012474 277 SVMYVSFGSIVVVNVTEFLEIAWGLANSRVPF-LWVVRPGLVPGVEWLEPLPKGFLEM--LDGRGHIVKWAPQ-----QE 348 (463)
Q Consensus 277 ~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~vpq-----~~ 348 (463)
+.+++..|.........+..+++++.+....+ ++.++.+. + .+.+ ....+. .++++.+.+|+++ .+
T Consensus 180 ~~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g~----~-~~~l-~~~~~~~~l~~~v~f~G~~~~~~~~~~~ 253 (359)
T PRK09922 180 PAVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGDGS----D-FEKC-KAYSRELGIEQRIIWHGWQSQPWEVVQQ 253 (359)
T ss_pred CcEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeCCc----c-HHHH-HHHHHHcCCCCeEEEecccCCcHHHHHH
Confidence 45667777764323344566777776653333 23333321 0 1111 111111 3467788888754 23
Q ss_pred hhcCCCCcccccc----cChhhHHHHHhhCCceeccc-cccchhhhHHHHHHHhhceeecCCccCHHHHHHHHHHHhccc
Q 012474 349 VLAHPAVGGFWTH----NGWNSTLESICEGVPMICQP-CFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVEA 423 (463)
Q Consensus 349 lL~~~~~~~~I~h----gG~~s~~eal~~GvP~l~~P-~~~DQ~~na~rv~~~~G~G~~l~~~~t~~~l~~~i~~~l~~~ 423 (463)
.+..+++ +|.. |--.++.||+++|+|+|+.- ..+ ....++.. ..|..++. -+.+++.++|.++++|+
T Consensus 254 ~~~~~d~--~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv~~~-~~G~lv~~-~d~~~la~~i~~l~~~~ 325 (359)
T PRK09922 254 KIKNVSA--LLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDIIKPG-LNGELYTP-GNIDEFVGKLNKVISGE 325 (359)
T ss_pred HHhcCcE--EEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHccCC-CceEEECC-CCHHHHHHHHHHHHhCc
Confidence 3455666 6643 32479999999999999865 322 23455553 56777765 79999999999999994
No 83
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.73 E-value=1.4e-05 Score=76.68 Aligned_cols=109 Identities=17% Similarity=0.125 Sum_probs=70.6
Q ss_pred CCCceeeccCh-hhhhcCCCCcccccccC----hhhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCCccCHH
Q 012474 336 GRGHIVKWAPQ-QEVLAHPAVGGFWTHNG----WNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERR 410 (463)
Q Consensus 336 ~~~~~~~~vpq-~~lL~~~~~~~~I~hgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~t~~ 410 (463)
+++.+.++..+ ..++..+++ +|..+. .+++.||+++|+|+|+... ..+...+.+ .|..++. -+.+
T Consensus 251 ~~v~~~g~~~~~~~~~~~adi--~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~----~~~~e~~~~---~g~~~~~-~~~~ 320 (365)
T cd03807 251 DKVILLGERSDVPALLNALDV--FVLSSLSEGFPNVLLEAMACGLPVVATDV----GDNAELVGD---TGFLVPP-GDPE 320 (365)
T ss_pred ceEEEccccccHHHHHHhCCE--EEeCCccccCCcHHHHHHhcCCCEEEcCC----CChHHHhhc---CCEEeCC-CCHH
Confidence 44555555554 678989998 886544 3799999999999998543 344444444 3444443 5789
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 012474 411 EIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHI 460 (463)
Q Consensus 411 ~l~~~i~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 460 (463)
++.++|.++++++ +.+++..++.++.+ .+.-+.++.++++.+.+
T Consensus 321 ~l~~~i~~l~~~~--~~~~~~~~~~~~~~----~~~~s~~~~~~~~~~~y 364 (365)
T cd03807 321 ALAEAIEALLADP--ALRQALGEAARERI----EENFSIEAMVEAYEELY 364 (365)
T ss_pred HHHHHHHHHHhCh--HHHHHHHHHHHHHH----HHhCCHHHHHHHHHHHh
Confidence 9999999999983 22222223333333 35667778787777654
No 84
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.72 E-value=3.3e-06 Score=78.51 Aligned_cols=348 Identities=14% Similarity=0.119 Sum_probs=183.8
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCcccccccHHHHHHHHHHh
Q 012474 14 GRRVILFPLPLQGHINPMLQLASILYSK-GFSITIIHTNFNSPNPSNYPHFSFNSISESLWESEVSTENAISLLTVLNDK 92 (463)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (463)
.+||.+++.-..|++.- -.|.++|.++ | +|.|++-.. ....+ .|++- + .+........+.+.+..+-+.
T Consensus 1 ~~ki~i~AGE~SGDllG-a~LikaLk~~~~-~~efvGvgG-~~m~a--eG~~s--l---~~~~elsvmGf~EVL~~lp~l 70 (381)
T COG0763 1 MLKIALSAGEASGDLLG-AGLIKALKARYP-DVEFVGVGG-EKMEA--EGLES--L---FDMEELSVMGFVEVLGRLPRL 70 (381)
T ss_pred CceEEEEecccchhhHH-HHHHHHHHhhCC-CeEEEEecc-HHHHh--ccCcc--c---cCHHHHHHhhHHHHHHHHHHH
Confidence 36899999998898875 4678888887 5 777776521 11111 23211 1 111111222333444333222
Q ss_pred cCchHHHHHHHHHhCCCCCCCceEEE-eCC--chhhHHHHHHHcC--CCeEEEeC-chhHHHHHHHHHHHHHHhcccccc
Q 012474 93 CVVPFQDCLAKLISNGDQEEPVTCLI-TDA--IWHFAQTVADTLR--LPRIVLRT-SSISSFLAFSAFQILLEKGYLAEQ 166 (463)
Q Consensus 93 ~~~~l~~~l~~l~~~~~~~~~pD~VI-~D~--~~~~~~~~A~~~g--iP~v~~~~-~~~~~~~~~~~~~~~~~~~~~p~~ 166 (463)
. ...+++++.+.. .+||++| .|. |..-...-.++.| +|.|.+.. +-+. +
T Consensus 71 l-k~~~~~~~~i~~-----~kpD~~i~IDsPdFnl~vak~lrk~~p~i~iihYV~PsVWA---------------W---- 125 (381)
T COG0763 71 L-KIRRELVRYILA-----NKPDVLILIDSPDFNLRVAKKLRKAGPKIKIIHYVSPSVWA---------------W---- 125 (381)
T ss_pred H-HHHHHHHHHHHh-----cCCCEEEEeCCCCCchHHHHHHHHhCCCCCeEEEECcceee---------------e----
Confidence 2 334456666665 6899988 565 2233333444566 88876443 2111 0
Q ss_pred ccCCCCCCCccccCCCCCCCcCCCCccccCCCchHHHHHHHHHhhccCCceEEEcchhhhhHHHHHHhhhcCCCCccccc
Q 012474 167 VSFSSDSQLEKPVTELPPLRVKDIPIIVTHDTRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELTRLHKDFPIPMFPIG 246 (463)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~v~~vG 246 (463)
+.... .......|.++.-- -||++.. ..++-+.+|||
T Consensus 126 ------------------------------r~~Ra-------~~i~~~~D~lLail--PFE~~~y----~k~g~~~~yVG 162 (381)
T COG0763 126 ------------------------------RPKRA-------VKIAKYVDHLLAIL--PFEPAFY----DKFGLPCTYVG 162 (381)
T ss_pred ------------------------------chhhH-------HHHHHHhhHeeeec--CCCHHHH----HhcCCCeEEeC
Confidence 11111 11122334434322 2333322 22456699999
Q ss_pred -cccccccccCCCcccccchhccccccCCCCeEEEEecCCcccCCHHH---HHHHHHHHhc--CCCceEEEEcCCCCCCC
Q 012474 247 -PFHKYCLASSSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTE---FLEIAWGLAN--SRVPFLWVVRPGLVPGV 320 (463)
Q Consensus 247 -pl~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~---~~~~~~al~~--~~~~~v~~~~~~~~~~~ 320 (463)
|+....+- .+......+-+....+++++.+-.||..+-=... +...++.+.. .+.++++-+....
T Consensus 163 Hpl~d~i~~-----~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~~---- 233 (381)
T COG0763 163 HPLADEIPL-----LPDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVNAK---- 233 (381)
T ss_pred Chhhhhccc-----cccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcHH----
Confidence 66555431 2222333444444457789999999987621222 2223333332 2356665543321
Q ss_pred ccCCCCchhHHHHhcCCC-ceeeccC-h--hhhhcCCCCcccccccChhhHHHHHhhCCceeccccc-cchhhhHHHHHH
Q 012474 321 EWLEPLPKGFLEMLDGRG-HIVKWAP-Q--QEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCF-GDQLVNARYVSH 395 (463)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~-~~~~~vp-q--~~lL~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~-~DQ~~na~rv~~ 395 (463)
.+.+-. +....+. ...-++. + .+++..|++ .+.-+|- -+.|+..+|+|||+.=-. .=-..-|.+...
T Consensus 234 --~~~~~~---~~~~~~~~~~~~~~~~~~~~~a~~~aD~--al~aSGT-~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk 305 (381)
T COG0763 234 --YRRIIE---EALKWEVAGLSLILIDGEKRKAFAAADA--ALAASGT-ATLEAALAGTPMVVAYKVKPITYFIAKRLVK 305 (381)
T ss_pred --HHHHHH---HHhhccccCceEEecCchHHHHHHHhhH--HHHhccH-HHHHHHHhCCCEEEEEeccHHHHHHHHHhcc
Confidence 011111 1111111 1222222 2 447777888 8888884 467999999999875311 111223344332
Q ss_pred Hhh------------ceeecCC-ccCHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 012474 396 VWR------------VGLHLER-KFERREIETAIRRVTVEA-EGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHIL 461 (463)
Q Consensus 396 ~~G------------~G~~l~~-~~t~~~l~~~i~~~l~~~-~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 461 (463)
.. +...+-. ..+++.|.+++.+++.|+ +...+++....+++.++ .++.++.+++.+++.+.
T Consensus 306 -~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~~~~~~~~~~~~~l~~~l~----~~~~~e~aA~~vl~~~~ 380 (381)
T COG0763 306 -LPYVSLPNILAGREIVPELIQEDCTPENLARALEELLLNGDRREALKEKFRELHQYLR----EDPASEIAAQAVLELLL 380 (381)
T ss_pred -CCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHc----CCcHHHHHHHHHHHHhc
Confidence 11 1111112 689999999999999995 34567777888888776 55688888888888764
No 85
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.71 E-value=2.5e-06 Score=83.74 Aligned_cols=109 Identities=17% Similarity=0.182 Sum_probs=74.4
Q ss_pred CCCceeeccCh-hhhhcCCCCcccc--cc--cCh-hhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCCccCH
Q 012474 336 GRGHIVKWAPQ-QEVLAHPAVGGFW--TH--NGW-NSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFER 409 (463)
Q Consensus 336 ~~~~~~~~vpq-~~lL~~~~~~~~I--~h--gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~t~ 409 (463)
+++.+.+++++ ..++..+++ +| ++ .|. +.+.||+++|+|+|+.+...+.. .+.. |.|..+. -++
T Consensus 280 ~~V~~~G~v~~~~~~~~~adv--~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~~-~~g~lv~--~~~ 349 (397)
T TIGR03087 280 PGVTVTGSVADVRPYLAHAAV--AVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DALP-GAELLVA--ADP 349 (397)
T ss_pred CCeEEeeecCCHHHHHHhCCE--EEecccccCCcccHHHHHHHcCCCEEecCcccccc-----cccC-CcceEeC--CCH
Confidence 56788899996 678999998 76 32 454 46999999999999988643321 1232 6676664 589
Q ss_pred HHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 012474 410 REIETAIRRVTVEAE-GQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHIL 461 (463)
Q Consensus 410 ~~l~~~i~~~l~~~~-~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 461 (463)
+++.++|.++++|++ ...+.+++++. ..+.-+-+..++++.+.++
T Consensus 350 ~~la~ai~~ll~~~~~~~~~~~~ar~~-------v~~~fsw~~~~~~~~~~l~ 395 (397)
T TIGR03087 350 ADFAAAILALLANPAEREELGQAARRR-------VLQHYHWPRNLARLDALLE 395 (397)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHH-------HHHhCCHHHHHHHHHHHhc
Confidence 999999999999832 22333333332 2245567777777776654
No 86
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.71 E-value=5.6e-06 Score=80.52 Aligned_cols=113 Identities=12% Similarity=0.034 Sum_probs=76.2
Q ss_pred CCCceeeccCh-hhhhcCCCCccccc--c--cChhhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCCccCHH
Q 012474 336 GRGHIVKWAPQ-QEVLAHPAVGGFWT--H--NGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERR 410 (463)
Q Consensus 336 ~~~~~~~~vpq-~~lL~~~~~~~~I~--h--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~t~~ 410 (463)
+++.+.++..+ .+++..+++ +|. + |--+++.||+++|+|+|+.... .+...+++. ..|..++. -+.+
T Consensus 255 ~~v~~~g~~~~~~~~~~~adi--~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~----g~~e~i~~~-~~g~~~~~-~d~~ 326 (374)
T TIGR03088 255 HLVWLPGERDDVPALMQALDL--FVLPSLAEGISNTILEAMASGLPVIATAVG----GNPELVQHG-VTGALVPP-GDAV 326 (374)
T ss_pred ceEEEcCCcCCHHHHHHhcCE--EEeccccccCchHHHHHHHcCCCEEEcCCC----CcHHHhcCC-CceEEeCC-CCHH
Confidence 44555565554 678999998 763 2 3357999999999999996643 355666663 66777765 7889
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012474 411 EIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILS 462 (463)
Q Consensus 411 ~l~~~i~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 462 (463)
++.++|.++++|+ ..++ ++++..++...+.-+.+..++++.+.+++
T Consensus 327 ~la~~i~~l~~~~---~~~~---~~~~~a~~~~~~~fs~~~~~~~~~~~y~~ 372 (374)
T TIGR03088 327 ALARALQPYVSDP---AARR---AHGAAGRARAEQQFSINAMVAAYAGLYDQ 372 (374)
T ss_pred HHHHHHHHHHhCH---HHHH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 9999999999883 3221 22222222222456778888888877664
No 87
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.71 E-value=7.1e-06 Score=81.57 Aligned_cols=332 Identities=13% Similarity=0.071 Sum_probs=168.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCcccccccHHHHHHHHHHhc
Q 012474 14 GRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSNYPHFSFNSISESLWESEVSTENAISLLTVLNDKC 93 (463)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (463)
.-||.+++.-..|++.- -.|.++|+++.=++.|.+-... ...+ .|++.. .+........+.+.+..+ ...
T Consensus 226 ~~kIfI~AGE~SGDlhg-A~Li~aLk~~~P~i~~~GvGG~--~M~a-aG~e~l-----~d~~eLsVmG~~EVL~~l-~~l 295 (608)
T PRK01021 226 NTSCFISAGEHSGDTLG-GNLLKEIKALYPDIHCFGVGGP--QMRA-EGFHPL-----FNMEEFQVSGFWEVLLAL-FKL 295 (608)
T ss_pred CCeEEEEeccccHHHHH-HHHHHHHHhcCCCcEEEEEccH--HHHh-CcCccc-----CChHHhhhhhHHHHHHHH-HHH
Confidence 45788888877787775 4567778877656666543210 1111 233211 011111122333444433 222
Q ss_pred CchHHHHHHHHHhCCCCCCCceEEEe-CC--chhhHHHHHHHcCC--CeEEEeCchhHHHHHHHHHHHHHHhcccccccc
Q 012474 94 VVPFQDCLAKLISNGDQEEPVTCLIT-DA--IWHFAQTVADTLRL--PRIVLRTSSISSFLAFSAFQILLEKGYLAEQVS 168 (463)
Q Consensus 94 ~~~l~~~l~~l~~~~~~~~~pD~VI~-D~--~~~~~~~~A~~~gi--P~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 168 (463)
...++++.+.+.+ .+||++|. |. |..-.+-.+++.|+ |++.+.+- ....
T Consensus 296 ~~~~~~l~~~i~~-----~kPD~vIlID~PgFNlrLAK~lkk~Gi~ipviyYVsP-----------------qVWA---- 349 (608)
T PRK01021 296 WYRYRKLYKTILK-----TNPRTVICIDFPDFHFLLIKKLRKRGYKGKIVHYVCP-----------------SIWA---- 349 (608)
T ss_pred HHHHHHHHHHHHh-----cCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEECc-----------------ccee----
Confidence 2344455666655 68999884 76 33444556777886 98764442 0000
Q ss_pred CCCCCCCccccCCCCCCCcCCCCccccCCCchHHHHHHHHHhhccCCceEEEcchhhhhHHHHHHhhhcCCCCccccc-c
Q 012474 169 FSSDSQLEKPVTELPPLRVKDIPIIVTHDTRNFHQLISAVVSKTKACSGLIWNSFEDLEQTELTRLHKDFPIPMFPIG-P 247 (463)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~v~~vG-p 247 (463)
++... .+.+. +..|.+++--. ||.+.. + ..+.++.||| |
T Consensus 350 ---------------------------WR~~R-ikki~------k~vD~ll~IfP--FE~~~y---~-~~gv~v~yVGHP 389 (608)
T PRK01021 350 ---------------------------WRPKR-KTILE------KYLDLLLLILP--FEQNLF---K-DSPLRTVYLGHP 389 (608)
T ss_pred ---------------------------eCcch-HHHHH------HHhhhheecCc--cCHHHH---H-hcCCCeEEECCc
Confidence 01111 11111 12233343323 333322 2 2477899999 7
Q ss_pred ccccccccCCCcccccchhccccccCCCCeEEEEecCCcccCCHHHHHHHHHHHh--cC--CCceEEEEcCCCCCCCccC
Q 012474 248 FHKYCLASSSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLA--NS--RVPFLWVVRPGLVPGVEWL 323 (463)
Q Consensus 248 l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~--~~--~~~~v~~~~~~~~~~~~~~ 323 (463)
+....+. .+...+..+-+.-.+++++|-+-.||..+.=...+..++++.+ .. +.++++......
T Consensus 390 L~d~i~~-----~~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~~~l~fvvp~a~~~------- 457 (608)
T PRK01021 390 LVETISS-----FSPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLASTHQLLVSSANPK------- 457 (608)
T ss_pred HHhhccc-----CCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhccCeEEEEecCchh-------
Confidence 7655321 1112222333333346789999999977622233444555555 33 334444322111
Q ss_pred CCCchhHHHHhcC-C---CceeeccChhhhhcCCCCcccccccChhhHHHHHhhCCceeccccc-cchhhhHHHHHH---
Q 012474 324 EPLPKGFLEMLDG-R---GHIVKWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCF-GDQLVNARYVSH--- 395 (463)
Q Consensus 324 ~~~~~~~~~~~~~-~---~~~~~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~-~DQ~~na~rv~~--- 395 (463)
..+.+.+...+ + +.++.--...+++..|++ .+.-.|- .+.|+...|+||+++=-. .=-..-|+++.+
T Consensus 458 --~~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD~--aLaaSGT-aTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i 532 (608)
T PRK01021 458 --YDHLILEVLQQEGCLHSHIVPSQFRYELMRECDC--ALAKCGT-IVLETALNQTPTIVTCQLRPFDTFLAKYIFKIIL 532 (608)
T ss_pred --hHHHHHHHHhhcCCCCeEEecCcchHHHHHhcCe--eeecCCH-HHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccC
Confidence 11222222211 1 112210012678999999 8888884 578999999999985322 222233555544
Q ss_pred -----------HhhceeecC--C-ccCHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHH
Q 012474 396 -----------VWRVGLHLE--R-KFERREIETAIRRVTVEAE-GQEMRERIMHLKEKLE 440 (463)
Q Consensus 396 -----------~~G~G~~l~--~-~~t~~~l~~~i~~~l~~~~-~~~~~~~a~~~~~~~~ 440 (463)
+ .+-.++- . ..|++.|.+++ ++|.|++ .+.+++..+++++.+.
T Consensus 533 ~yIsLpNIIagr-~VvPEllqgQ~~~tpe~La~~l-~lL~d~~~r~~~~~~l~~lr~~Lg 590 (608)
T PRK01021 533 PAYSLPNIILGS-TIFPEFIGGKKDFQPEEVAAAL-DILKTSQSKEKQKDACRDLYQAMN 590 (608)
T ss_pred CeeehhHHhcCC-CcchhhcCCcccCCHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHhc
Confidence 1 2222223 2 57899999997 7787742 4455666666665553
No 88
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.70 E-value=3.3e-05 Score=75.81 Aligned_cols=115 Identities=10% Similarity=0.151 Sum_probs=80.7
Q ss_pred cCCCceeeccChh---hhhcCCCCcccccc---------cCh-hhHHHHHhhCCceeccccccchhhhHHHHHHHhhcee
Q 012474 335 DGRGHIVKWAPQQ---EVLAHPAVGGFWTH---------NGW-NSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGL 401 (463)
Q Consensus 335 ~~~~~~~~~vpq~---~lL~~~~~~~~I~h---------gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~ 401 (463)
.+++.+.+|+|+. +++..+++ +|.- -|. +++.||+++|+|+|+.... .....++.. ..|.
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aDv--~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~----g~~E~v~~~-~~G~ 350 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDADV--FLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHS----GIPELVEAD-KSGW 350 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCCE--EEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCC----CchhhhcCC-CceE
Confidence 4677888999974 47888888 7642 344 6789999999999987543 344556653 5787
Q ss_pred ecCCccCHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhcC
Q 012474 402 HLERKFERREIETAIRRVTV-EAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILSF 463 (463)
Q Consensus 402 ~l~~~~t~~~l~~~i~~~l~-~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 463 (463)
..+. -+.+++.++|.++++ |+ +.+ +++++..++-..+.-+.+..++++.+.++++
T Consensus 351 lv~~-~d~~~la~ai~~l~~~d~---~~~---~~~~~~ar~~v~~~f~~~~~~~~l~~~~~~~ 406 (406)
T PRK15427 351 LVPE-NDAQALAQRLAAFSQLDT---DEL---APVVKRAREKVETDFNQQVINRELASLLQAL 406 (406)
T ss_pred EeCC-CCHHHHHHHHHHHHhCCH---HHH---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence 7765 789999999999999 73 322 2233333333335667888889988888764
No 89
>PLN02275 transferase, transferring glycosyl groups
Probab=98.69 E-value=1.3e-05 Score=77.87 Aligned_cols=320 Identities=12% Similarity=0.061 Sum_probs=160.0
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCC-eEEEEeCCCCCCC--CCCCCCceEEeCCCCCCCcccccccHHHHHHHH
Q 012474 13 KGRRVILFPLPLQGHINPMLQLASILYSKGF-SITIIHTNFNSPN--PSNYPHFSFNSISESLWESEVSTENAISLLTVL 89 (463)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh-~Vt~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (463)
.+-|+.++..+-.|.-..+..++..|+++|| +|++++....... ..+..++..+.++. +............+..+
T Consensus 3 ~~~~~~~~~~~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~~~~~~~~~v~v~r~~~--~~~~~~~~~~~~~~~~~ 80 (371)
T PLN02275 3 RRGRAAVVVLGDFGRSPRMQYHALSLARQASFQVDVVAYGGSEPIPALLNHPSIHIHLMVQ--PRLLQRLPRVLYALALL 80 (371)
T ss_pred CccEEEEEEecCCCCCHHHHHHHHHHHhcCCceEEEEEecCCCCCHHHhcCCcEEEEECCC--cccccccccchHHHHHH
Confidence 3556777777888999999999999999986 7999987432221 12235688887764 11111111122211111
Q ss_pred HHhcCchHHHHHHHH-HhCCCCCCCceEEEeCC-ch----hhHHHHHHHcCCCeEEEeCchhHHHHHHHHHHHHHHhccc
Q 012474 90 NDKCVVPFQDCLAKL-ISNGDQEEPVTCLITDA-IW----HFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYL 163 (463)
Q Consensus 90 ~~~~~~~l~~~l~~l-~~~~~~~~~pD~VI~D~-~~----~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (463)
.... ..+...+..+ .+. .+||+|++.. .. ..+..++...++|++......... . ...+.
T Consensus 81 ~~~~-~~~~~~~~~~~~~~----~~~DvV~~~~~~~~~~~~~~~~~~~~~~~p~v~~~h~~~~~--~-------~~~~~- 145 (371)
T PLN02275 81 LKVA-IQFLMLLWFLCVKI----PRPDVFLVQNPPSVPTLAVVKLACWLRRAKFVIDWHNFGYT--L-------LALSL- 145 (371)
T ss_pred HHHH-HHHHHHHHHHHhhC----CCCCEEEEeCCCCcHHHHHHHHHHHHhCCCEEEEcCCccHH--H-------Hhccc-
Confidence 1100 1112222222 122 6799999853 22 123456667899998865442110 0 00000
Q ss_pred cccccCCCCCCCccccCCCCCCCcCCCCccccCCCchHHHHHHHHHh-hccCCceEEEcchhhhhHHHHHHhhhcCCCC-
Q 012474 164 AEQVSFSSDSQLEKPVTELPPLRVKDIPIIVTHDTRNFHQLISAVVS-KTKACSGLIWNSFEDLEQTELTRLHKDFPIP- 241 (463)
Q Consensus 164 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~s~~~le~~~~~~~~~~~~~~- 241 (463)
. .+............ ....+|.+++.|...-+.- .+.++.+
T Consensus 146 --~------------------------------~~~~~~~~~~~~e~~~~~~ad~ii~~S~~~~~~l-----~~~~g~~i 188 (371)
T PLN02275 146 --G------------------------------RSHPLVRLYRWYERHYGKMADGHLCVTKAMQHEL-----DQNWGIRA 188 (371)
T ss_pred --C------------------------------CCCHHHHHHHHHHHHHHhhCCEEEECCHHHHHHH-----HHhcCCCe
Confidence 0 11112222222222 2355788888776654431 2212222
Q ss_pred -ccccccccccccccCCCcccccchhccccccCCCCeEEEEecCCcccCCHHHHHHHHHHHhcC----------------
Q 012474 242 -MFPIGPFHKYCLASSSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANS---------------- 304 (463)
Q Consensus 242 -v~~vGpl~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~---------------- 304 (463)
+++-| .. ... .+.... .. +. .+++.++++.|.... .+.+..+++|+...
T Consensus 189 ~vi~n~-~~-~~f------~~~~~~-~~-~~--~~~~~~i~~~grl~~--~k~~~~li~a~~~l~~~~~~~~~~~~~~~~ 254 (371)
T PLN02275 189 TVLYDQ-PP-EFF------RPASLE-IR-LR--PNRPALVVSSTSWTP--DEDFGILLEAAVMYDRRVAARLNESDSASG 254 (371)
T ss_pred EEECCC-CH-HHc------CcCCch-hc-cc--CCCcEEEEEeCceec--cCCHHHHHHHHHHHHhhhhhcccccccccc
Confidence 22222 11 000 010100 01 11 123345555566543 22233333333221
Q ss_pred ------CCceEEEEcCCCCCCCccCCCCchhHHHHhc----CCCcee-eccChhh---hhcCCCCccccc-c-----cC-
Q 012474 305 ------RVPFLWVVRPGLVPGVEWLEPLPKGFLEMLD----GRGHIV-KWAPQQE---VLAHPAVGGFWT-H-----NG- 363 (463)
Q Consensus 305 ------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~vpq~~---lL~~~~~~~~I~-h-----gG- 363 (463)
+.+++ .++++. .-+.+.+... +|+.+. .|+|+.+ +|+.+|+ +|. + -|
T Consensus 255 ~~~~~~~i~l~-ivG~G~---------~~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~~aDv--~v~~~~s~~~e~~ 322 (371)
T PLN02275 255 KQSLYPRLLFI-ITGKGP---------QKAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLGSADL--GVSLHTSSSGLDL 322 (371)
T ss_pred ccccCCCeEEE-EEeCCC---------CHHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHHhCCE--EEEeccccccccc
Confidence 22333 333332 1122322222 444554 4788644 5888998 773 1 12
Q ss_pred hhhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCCccCHHHHHHHHHHHh
Q 012474 364 WNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVT 420 (463)
Q Consensus 364 ~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~t~~~l~~~i~~~l 420 (463)
-+++.||+++|+|+|.... ..+...+++. +.|...+ +++++.++|.++|
T Consensus 323 p~~llEAmA~G~PVVa~~~----gg~~eiv~~g-~~G~lv~---~~~~la~~i~~l~ 371 (371)
T PLN02275 323 PMKVVDMFGCGLPVCAVSY----SCIGELVKDG-KNGLLFS---SSSELADQLLELL 371 (371)
T ss_pred cHHHHHHHHCCCCEEEecC----CChHHHccCC-CCeEEEC---CHHHHHHHHHHhC
Confidence 2579999999999998653 3366777774 7888776 4889999998875
No 90
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.66 E-value=8.3e-06 Score=79.88 Aligned_cols=98 Identities=12% Similarity=0.097 Sum_probs=63.4
Q ss_pred eeeccChhhhhcCCCCccccccc----ChhhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCCccCHHHHHHH
Q 012474 340 IVKWAPQQEVLAHPAVGGFWTHN----GWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETA 415 (463)
Q Consensus 340 ~~~~vpq~~lL~~~~~~~~I~hg----G~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~t~~~l~~~ 415 (463)
+..+.+..+++...++ ||.-+ =-+++.||+++|+|+|+.-..+ + ..+.+. +-|... -+.+++.++
T Consensus 288 f~G~~~~~~~~~~~Dv--Fv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v~~~-~ng~~~---~~~~~~a~a 356 (462)
T PLN02846 288 YPGRDHADPLFHDYKV--FLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFFKQF-PNCRTY---DDGKGFVRA 356 (462)
T ss_pred ECCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCcEEEecCCC----c-ceeecC-CceEec---CCHHHHHHH
Confidence 3455566779988888 88763 3478999999999999886543 2 334442 555444 368899999
Q ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 012474 416 IRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHI 460 (463)
Q Consensus 416 i~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 460 (463)
+.++|.++. +..+.+++ ..-+-+.+++++++.+
T Consensus 357 i~~~l~~~~-~~~~~~a~-----------~~~SWe~~~~~l~~~~ 389 (462)
T PLN02846 357 TLKALAEEP-APLTDAQR-----------HELSWEAATERFLRVA 389 (462)
T ss_pred HHHHHccCc-hhHHHHHH-----------HhCCHHHHHHHHHHHh
Confidence 999998621 11221111 2345666777776654
No 91
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.66 E-value=3.4e-05 Score=72.71 Aligned_cols=310 Identities=13% Similarity=0.132 Sum_probs=172.0
Q ss_pred CCCccCHHHHHHHHHHHHhC--CCeEEEEe-CCCCCCCCCC-C-CCceEEeCCCCCCCcccccccHHHHHHHHHHhcCch
Q 012474 22 LPLQGHINPMLQLASILYSK--GFSITIIH-TNFNSPNPSN-Y-PHFSFNSISESLWESEVSTENAISLLTVLNDKCVVP 96 (463)
Q Consensus 22 ~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~-~~~~~~~~~~-~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (463)
.-+.|-++..++|.++|.++ ++.|++-| ++...+.... . ..+...-+|-..+ .
T Consensus 56 aaSVGEv~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~~~v~h~YlP~D~~----------~------------ 113 (419)
T COG1519 56 AASVGEVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFGDSVIHQYLPLDLP----------I------------ 113 (419)
T ss_pred ecchhHHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcCCCeEEEecCcCch----------H------------
Confidence 34669999999999999999 88887766 3222111111 0 1233333442111 1
Q ss_pred HHHHHHHHHhCCCCCCCceEEEeCC--chhhHHHHHHHcCCCeEEEeCchhHHHHHHHHHHHHHHhccccccccCCCCCC
Q 012474 97 FQDCLAKLISNGDQEEPVTCLITDA--IWHFAQTVADTLRLPRIVLRTSSISSFLAFSAFQILLEKGYLAEQVSFSSDSQ 174 (463)
Q Consensus 97 l~~~l~~l~~~~~~~~~pD~VI~D~--~~~~~~~~A~~~giP~v~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 174 (463)
.+..+.+. .+||++|.-. +|++.+.-++..|+|.+.+.-= + +.
T Consensus 114 ---~v~rFl~~----~~P~l~Ii~EtElWPnli~e~~~~~~p~~LvNaR----L---------------S~--------- 158 (419)
T COG1519 114 ---AVRRFLRK----WRPKLLIIMETELWPNLINELKRRGIPLVLVNAR----L---------------SD--------- 158 (419)
T ss_pred ---HHHHHHHh----cCCCEEEEEeccccHHHHHHHHHcCCCEEEEeee----e---------------ch---------
Confidence 12222221 5688876433 6677777888899999985442 0 00
Q ss_pred CccccCCCCCCCcCCCCccccCCCchHHHHHHHHH-hhccCCceEEEcchhhhhHHHHHHhhhcCCC-Cccccccccccc
Q 012474 175 LEKPVTELPPLRVKDIPIIVTHDTRNFHQLISAVV-SKTKACSGLIWNSFEDLEQTELTRLHKDFPI-PMFPIGPFHKYC 252 (463)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~s~~~le~~~~~~~~~~~~~-~v~~vGpl~~~~ 252 (463)
+.-..+..+..+. ..+.+.+.++.+|...-+- + . .++. ++..+|-+-...
T Consensus 159 ----------------------rS~~~y~k~~~~~~~~~~~i~li~aQse~D~~R--f---~-~LGa~~v~v~GNlKfd~ 210 (419)
T COG1519 159 ----------------------RSFARYAKLKFLARLLFKNIDLILAQSEEDAQR--F---R-SLGAKPVVVTGNLKFDI 210 (419)
T ss_pred ----------------------hhhHHHHHHHHHHHHHHHhcceeeecCHHHHHH--H---H-hcCCcceEEecceeecC
Confidence 1111222222222 2345667778777665542 1 1 1333 388888876664
Q ss_pred cccCCCccccc-chhccccccCCCCeEEEEecCCcccCCHHHHHHHHHHHhcCC--CceEEEEcCCCCCCCccCCCCchh
Q 012474 253 LASSSSLLSQD-QSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSR--VPFLWVVRPGLVPGVEWLEPLPKG 329 (463)
Q Consensus 253 ~~~~~~~~~~~-~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~--~~~v~~~~~~~~~~~~~~~~~~~~ 329 (463)
.. .+..+.. ..+...++. + ..+.|..+|... ..+.+.....++.+.. ..+||+-... + -.+.
T Consensus 211 ~~--~~~~~~~~~~~r~~l~~--~-r~v~iaaSTH~G-Eeei~l~~~~~l~~~~~~~llIlVPRHp--------E-Rf~~ 275 (419)
T COG1519 211 EP--PPQLAAELAALRRQLGG--H-RPVWVAASTHEG-EEEIILDAHQALKKQFPNLLLILVPRHP--------E-RFKA 275 (419)
T ss_pred CC--ChhhHHHHHHHHHhcCC--C-CceEEEecCCCc-hHHHHHHHHHHHHhhCCCceEEEecCCh--------h-hHHH
Confidence 42 0111111 122333333 1 456666666443 4445566666666543 3345543321 1 1122
Q ss_pred HHHHhcCC-Ccee-----------------eccC-hhhhhcCCCC----cccccccChhhHHHHHhhCCceeccccccch
Q 012474 330 FLEMLDGR-GHIV-----------------KWAP-QQEVLAHPAV----GGFWTHNGWNSTLESICEGVPMICQPCFGDQ 386 (463)
Q Consensus 330 ~~~~~~~~-~~~~-----------------~~vp-q~~lL~~~~~----~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ 386 (463)
+++..... ..+. |-+- -..++.-+++ +-++.+||+| ..|++++|+|+|.=|+..-|
T Consensus 276 v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~DtmGEL~l~y~~adiAFVGGSlv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf 354 (419)
T COG1519 276 VENLLKRKGLSVTRRSQGDPPFSDTDVLLGDTMGELGLLYGIADIAFVGGSLVPIGGHN-PLEPAAFGTPVIFGPYTFNF 354 (419)
T ss_pred HHHHHHHcCCeEEeecCCCCCCCCCcEEEEecHhHHHHHHhhccEEEECCcccCCCCCC-hhhHHHcCCCEEeCCccccH
Confidence 22222222 2222 2222 1223333332 1256699987 68999999999999999999
Q ss_pred hhhHHHHHHHhhceeecCCccCHHHHHHHHHHHhccch-HHHHHHHHHHHH
Q 012474 387 LVNARYVSHVWRVGLHLERKFERREIETAIRRVTVEAE-GQEMRERIMHLK 436 (463)
Q Consensus 387 ~~na~rv~~~~G~G~~l~~~~t~~~l~~~i~~~l~~~~-~~~~~~~a~~~~ 436 (463)
.+-+++++++ |.|+.++. .+.+.+++..+++|++ ++.|.+++..+=
T Consensus 355 ~ei~~~l~~~-ga~~~v~~---~~~l~~~v~~l~~~~~~r~~~~~~~~~~v 401 (419)
T COG1519 355 SDIAERLLQA-GAGLQVED---ADLLAKAVELLLADEDKREAYGRAGLEFL 401 (419)
T ss_pred HHHHHHHHhc-CCeEEECC---HHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 9999999996 99998875 7888888988888743 344444444433
No 92
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.65 E-value=4.8e-06 Score=79.21 Aligned_cols=192 Identities=16% Similarity=0.101 Sum_probs=104.9
Q ss_pred CCCCccccc-cccccccccCCCcccccchhccccccCCCCeEEEEecCCcccCCHHHHHHHHHHHhc---C--CCceEEE
Q 012474 238 FPIPMFPIG-PFHKYCLASSSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLAN---S--RVPFLWV 311 (463)
Q Consensus 238 ~~~~v~~vG-pl~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~---~--~~~~v~~ 311 (463)
.+.++.||| |+....+. . .......+.+ -..++++|.+--||..+-=...+..++++.+. . +.++++.
T Consensus 151 ~g~~~~~VGHPl~d~~~~---~--~~~~~~~~~~-l~~~~~iIaLLPGSR~~EI~rllP~~l~aa~~l~~~~p~l~fvvp 224 (373)
T PF02684_consen 151 HGVPVTYVGHPLLDEVKP---E--PDRAEAREKL-LDPDKPIIALLPGSRKSEIKRLLPIFLEAAKLLKKQRPDLQFVVP 224 (373)
T ss_pred cCCCeEEECCcchhhhcc---C--CCHHHHHHhc-CCCCCcEEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 467799999 77665442 1 1111222332 22367899999999776222223334444333 2 3344444
Q ss_pred EcCCCCCCCccCCCCchhHHH---HhcCCCceeecc-ChhhhhcCCCCcccccccChhhHHHHHhhCCceeccccc-cch
Q 012474 312 VRPGLVPGVEWLEPLPKGFLE---MLDGRGHIVKWA-PQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCF-GDQ 386 (463)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v-pq~~lL~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~-~DQ 386 (463)
..... ..+-+.+ ....++.+.-.. .-.+++..+++ .+.-.| ..+.|+...|+|||++=-. .=.
T Consensus 225 ~a~~~---------~~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~ad~--al~~SG-TaTLE~Al~g~P~Vv~Yk~~~lt 292 (373)
T PF02684_consen 225 VAPEV---------HEELIEEILAEYPPDVSIVIIEGESYDAMAAADA--ALAASG-TATLEAALLGVPMVVAYKVSPLT 292 (373)
T ss_pred cCCHH---------HHHHHHHHHHhhCCCCeEEEcCCchHHHHHhCcc--hhhcCC-HHHHHHHHhCCCEEEEEcCcHHH
Confidence 32211 1111111 112222222222 34678888998 887777 4678999999999987432 233
Q ss_pred hhhHHHHHHHhhc------------eeecCC-ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhCCChHH
Q 012474 387 LVNARYVSHVWRV------------GLHLER-KFERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQ 451 (463)
Q Consensus 387 ~~na~rv~~~~G~------------G~~l~~-~~t~~~l~~~i~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~ 451 (463)
+..|+++.+ ... -..+-. ..|++.|.+++.+++.| +..++..+...+.+++....+.++..
T Consensus 293 ~~iak~lvk-~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 366 (373)
T PF02684_consen 293 YFIAKRLVK-VKYISLPNIIAGREVVPELIQEDATPENIAAELLELLEN---PEKRKKQKELFREIRQLLGPGASSRA 366 (373)
T ss_pred HHHHHHhhc-CCEeechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHHhhhhccCCHH
Confidence 445566543 121 111112 78999999999999999 44444444444445444445555543
No 93
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.60 E-value=1.8e-05 Score=76.23 Aligned_cols=80 Identities=15% Similarity=0.219 Sum_probs=55.6
Q ss_pred hcCCCceeeccChh---hhhcCCCCcccccc----cChhhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCCc
Q 012474 334 LDGRGHIVKWAPQQ---EVLAHPAVGGFWTH----NGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERK 406 (463)
Q Consensus 334 ~~~~~~~~~~vpq~---~lL~~~~~~~~I~h----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~ 406 (463)
..+++.+.+++|+. +++..+++ +|.- |..+++.||+++|+|+|+.... .....+.+ .|..+..
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~~~~d~--~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~----~~~e~~~~---~~~~~~~- 320 (365)
T cd03809 251 LGDRVRFLGYVSDEELAALYRGARA--FVFPSLYEGFGLPVLEAMACGTPVIASNIS----SLPEVAGD---AALYFDP- 320 (365)
T ss_pred CCCeEEECCCCChhHHHHHHhhhhh--hcccchhccCCCCHHHHhcCCCcEEecCCC----CccceecC---ceeeeCC-
Confidence 44677888999864 57888888 6533 3346899999999999986542 12222233 2333443
Q ss_pred cCHHHHHHHHHHHhccc
Q 012474 407 FERREIETAIRRVTVEA 423 (463)
Q Consensus 407 ~t~~~l~~~i~~~l~~~ 423 (463)
-+.+++.++|.+++.|+
T Consensus 321 ~~~~~~~~~i~~l~~~~ 337 (365)
T cd03809 321 LDPEALAAAIERLLEDP 337 (365)
T ss_pred CCHHHHHHHHHHHhcCH
Confidence 57899999999999983
No 94
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.55 E-value=7.6e-06 Score=78.83 Aligned_cols=125 Identities=13% Similarity=0.143 Sum_probs=86.6
Q ss_pred EEEecCCcccCCHHHHHHHHHHHhcCCCceEEEEcCCCCCCCccCCCCchhHHHHhcCCCceeeccChh---hhhcCCCC
Q 012474 279 MYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIVKWAPQQ---EVLAHPAV 355 (463)
Q Consensus 279 v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpq~---~lL~~~~~ 355 (463)
.++..|+.. ....+..++++++..+.+++++-.+. ..+.+.+...+|+.+.+++|+. .++..+++
T Consensus 197 ~il~~G~~~--~~K~~~~li~a~~~~~~~l~ivG~g~----------~~~~l~~~~~~~V~~~g~~~~~~~~~~~~~ad~ 264 (351)
T cd03804 197 YYLSVGRLV--PYKRIDLAIEAFNKLGKRLVVIGDGP----------ELDRLRAKAGPNVTFLGRVSDEELRDLYARARA 264 (351)
T ss_pred EEEEEEcCc--cccChHHHHHHHHHCCCcEEEEECCh----------hHHHHHhhcCCCEEEecCCCHHHHHHHHHhCCE
Confidence 345566655 33456777888888776655544332 2233444566888999999974 57888888
Q ss_pred cccc--cccCh-hhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCCccCHHHHHHHHHHHhccc
Q 012474 356 GGFW--THNGW-NSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVEA 423 (463)
Q Consensus 356 ~~~I--~hgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~t~~~l~~~i~~~l~~~ 423 (463)
+| +.-|. .++.||+++|+|+|+....+ ....+++. +.|..++. -+++++.++|.++++|+
T Consensus 265 --~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~~-~~G~~~~~-~~~~~la~~i~~l~~~~ 327 (351)
T cd03804 265 --FLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETVIDG-VTGILFEE-QTVESLAAAVERFEKNE 327 (351)
T ss_pred --EEECCcCCCCchHHHHHHcCCCEEEeCCCC----CcceeeCC-CCEEEeCC-CCHHHHHHHHHHHHhCc
Confidence 66 33344 46789999999999976533 34456663 67887775 68899999999999984
No 95
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.54 E-value=3.8e-07 Score=72.09 Aligned_cols=129 Identities=16% Similarity=0.172 Sum_probs=83.4
Q ss_pred CeEEEEecCCcccCC---HHHHHHHHHHHhcCCC-ceEEEEcCCCCCCCccCCCCchhHHHHh-cCCCce--eeccCh-h
Q 012474 276 KSVMYVSFGSIVVVN---VTEFLEIAWGLANSRV-PFLWVVRPGLVPGVEWLEPLPKGFLEML-DGRGHI--VKWAPQ-Q 347 (463)
Q Consensus 276 ~~~v~vs~Gs~~~~~---~~~~~~~~~al~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~vpq-~ 347 (463)
...+|||.||....+ ...-....+.|.+.|+ +.++..+.+.. . .++.+.... .+...+ .+|-|- .
T Consensus 3 ~~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~-----~--~~d~~~~~~k~~gl~id~y~f~psl~ 75 (170)
T KOG3349|consen 3 LMTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQP-----F--FGDPIDLIRKNGGLTIDGYDFSPSLT 75 (170)
T ss_pred ceEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCcc-----C--CCCHHHhhcccCCeEEEEEecCccHH
Confidence 458999999987411 1112345667777786 56777776521 1 222222111 122222 277785 6
Q ss_pred hhhcCCCCcccccccChhhHHHHHhhCCceecccc----ccchhhhHHHHHHHhhceeecCCccCHHHHHHHHHH
Q 012474 348 EVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPC----FGDQLVNARYVSHVWRVGLHLERKFERREIETAIRR 418 (463)
Q Consensus 348 ~lL~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~----~~DQ~~na~rv~~~~G~G~~l~~~~t~~~l~~~i~~ 418 (463)
+..+.+++ ||+|+|.||+.|.|..|+|.|+++- -.+|-.-|..+++. |.=. ..++.++-+.+.+
T Consensus 76 e~I~~Adl--VIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~e-gyL~----~C~ps~L~~~L~~ 143 (170)
T KOG3349|consen 76 EDIRSADL--VISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEE-GYLY----YCTPSTLPAGLAK 143 (170)
T ss_pred HHHhhccE--EEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhc-CcEE----EeeccchHHHHHh
Confidence 67777888 9999999999999999999999994 47899999988884 6433 2333345444443
No 96
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=98.54 E-value=1.2e-05 Score=79.22 Aligned_cols=80 Identities=16% Similarity=0.156 Sum_probs=55.0
Q ss_pred cCCCceeeccChh---hhhcCCCCcccccc---cCh-hhHHHHHhhCCceeccccccchhhhHHHHH---HHhhceeecC
Q 012474 335 DGRGHIVKWAPQQ---EVLAHPAVGGFWTH---NGW-NSTLESICEGVPMICQPCFGDQLVNARYVS---HVWRVGLHLE 404 (463)
Q Consensus 335 ~~~~~~~~~vpq~---~lL~~~~~~~~I~h---gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~rv~---~~~G~G~~l~ 404 (463)
.+++.+.+++|+. .+|..+++ +|+- -|. -++.||+++|+|+|+.-..+. ....++ .. ..|...
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~adv--~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp---~~~iv~~~~~g-~~G~l~- 376 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTASI--GLHTMWNEHFGIGVVEYMAAGLIPLAHASGGP---LLDIVVPWDGG-PTGFLA- 376 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCeE--EEECCccCCcccHHHHHHHcCCcEEEEcCCCC---chheeeccCCC-CceEEe-
Confidence 4678888999864 57888888 6642 122 488999999999987654321 112222 32 466553
Q ss_pred CccCHHHHHHHHHHHhccc
Q 012474 405 RKFERREIETAIRRVTVEA 423 (463)
Q Consensus 405 ~~~t~~~l~~~i~~~l~~~ 423 (463)
-+++++.++|.++++++
T Consensus 377 --~d~~~la~ai~~ll~~~ 393 (419)
T cd03806 377 --STAEEYAEAIEKILSLS 393 (419)
T ss_pred --CCHHHHHHHHHHHHhCC
Confidence 28999999999999863
No 97
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.51 E-value=0.00027 Score=73.41 Aligned_cols=79 Identities=15% Similarity=0.160 Sum_probs=51.9
Q ss_pred CCCceeecc-Ch---hhhhcC-CC-Cccccc---ccC-hhhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCC
Q 012474 336 GRGHIVKWA-PQ---QEVLAH-PA-VGGFWT---HNG-WNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLER 405 (463)
Q Consensus 336 ~~~~~~~~v-pq---~~lL~~-~~-~~~~I~---hgG-~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~ 405 (463)
+++.+.++. +. .+++.+ ++ .++||. .=| -.|+.||+++|+|+|+.-. ...+..++.. .-|..++.
T Consensus 619 g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~----GG~~EiV~dg-~tGfLVdp 693 (784)
T TIGR02470 619 GQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRF----GGPLEIIQDG-VSGFHIDP 693 (784)
T ss_pred CeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHhcCC-CcEEEeCC
Confidence 566666654 32 345543 22 122663 223 3599999999999988544 3456667663 66888876
Q ss_pred ccCHHHHHHHHHHHh
Q 012474 406 KFERREIETAIRRVT 420 (463)
Q Consensus 406 ~~t~~~l~~~i~~~l 420 (463)
-++++++++|.+++
T Consensus 694 -~D~eaLA~aL~~ll 707 (784)
T TIGR02470 694 -YHGEEAAEKIVDFF 707 (784)
T ss_pred -CCHHHHHHHHHHHH
Confidence 68899999998876
No 98
>PLN00142 sucrose synthase
Probab=98.51 E-value=7e-05 Score=77.66 Aligned_cols=89 Identities=15% Similarity=0.179 Sum_probs=54.0
Q ss_pred cccc---cCh-hhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCCccCHHHHHHHHHHH----hccch-HHHH
Q 012474 358 FWTH---NGW-NSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRV----TVEAE-GQEM 428 (463)
Q Consensus 358 ~I~h---gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~t~~~l~~~i~~~----l~~~~-~~~~ 428 (463)
||.= -|. .++.||+++|+|+|+... ......|+.. .-|..++. -++++++++|.++ +.|++ +..|
T Consensus 670 fVlPS~~EgFGLvvLEAMA~GlPVVATdv----GG~~EIV~dG-~tG~LV~P-~D~eaLA~aI~~lLekLl~Dp~lr~~m 743 (815)
T PLN00142 670 FVQPALYEAFGLTVVEAMTCGLPTFATCQ----GGPAEIIVDG-VSGFHIDP-YHGDEAANKIADFFEKCKEDPSYWNKI 743 (815)
T ss_pred EEeCCcccCCCHHHHHHHHcCCCEEEcCC----CCHHHHhcCC-CcEEEeCC-CCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 6642 444 489999999999988644 3455666663 56888776 6788888887764 46632 2333
Q ss_pred HHHHHHHHHHHHHHHhhCCChHHHHHHHHHH
Q 012474 429 RERIMHLKEKLELSLLEAGSSYQSLERLVDH 459 (463)
Q Consensus 429 ~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~ 459 (463)
.+++++- .. +.-+-...++++++.
T Consensus 744 g~~Ar~r---v~----e~FSWe~~A~rll~L 767 (815)
T PLN00142 744 SDAGLQR---IY----ECYTWKIYAERLLTL 767 (815)
T ss_pred HHHHHHH---HH----HhCCHHHHHHHHHHH
Confidence 3333221 11 334455566665554
No 99
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.50 E-value=0.00024 Score=73.53 Aligned_cols=113 Identities=16% Similarity=0.129 Sum_probs=76.7
Q ss_pred cCCCceeeccCh-hhhhcCCCCccccc---ccCh-hhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCC-ccC
Q 012474 335 DGRGHIVKWAPQ-QEVLAHPAVGGFWT---HNGW-NSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLER-KFE 408 (463)
Q Consensus 335 ~~~~~~~~~vpq-~~lL~~~~~~~~I~---hgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~-~~t 408 (463)
.+++.+.+|.++ ..+|..+++ +|. +.|. +++.||+++|+|+|+.... .....+++. ..|..++. +.+
T Consensus 573 ~~~V~flG~~~dv~~ll~aaDv--~VlpS~~Egfp~vlLEAMA~G~PVVat~~g----G~~EiV~dg-~~GlLv~~~d~~ 645 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFNA--FLLLSRFEGLPNVLIEAQFSGVPVVTTLAG----GAGEAVQEG-VTGLTLPADTVT 645 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcCE--EEeccccccchHHHHHHHHcCCeEEEECCC----ChHHHccCC-CCEEEeCCCCCC
Confidence 367788888886 678988888 764 5564 7999999999999997653 345566663 56888876 566
Q ss_pred HHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 012474 409 RREIETAIRRVTVEAE-GQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHIL 461 (463)
Q Consensus 409 ~~~l~~~i~~~l~~~~-~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 461 (463)
++++.+++.+++.+.. .+.+++++++... +.-+.+..++++.+..+
T Consensus 646 ~~~La~aL~~ll~~l~~~~~l~~~ar~~a~-------~~FS~~~~~~~~~~lY~ 692 (694)
T PRK15179 646 APDVAEALARIHDMCAADPGIARKAADWAS-------ARFSLNQMIASTVRCYQ 692 (694)
T ss_pred hHHHHHHHHHHHhChhccHHHHHHHHHHHH-------HhCCHHHHHHHHHHHhC
Confidence 6677777766665311 1455555443322 45567778888777654
No 100
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.39 E-value=6.6e-05 Score=72.31 Aligned_cols=80 Identities=14% Similarity=0.059 Sum_probs=57.2
Q ss_pred cCCCceeeccCh-hhhhcCCCCcccccc----cChhhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCCccCH
Q 012474 335 DGRGHIVKWAPQ-QEVLAHPAVGGFWTH----NGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFER 409 (463)
Q Consensus 335 ~~~~~~~~~vpq-~~lL~~~~~~~~I~h----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~t~ 409 (463)
.+++.+.++..+ .+++..+++ +|.- |--+++.||+++|+|+|+....+ ....+.. +.|..... -++
T Consensus 248 ~~~v~~~g~~~~~~~~~~~adi--~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i~~--~~~~~~~~-~~~ 318 (358)
T cd03812 248 EDKVIFLGVRNDVPELLQAMDV--FLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDLTD--LVKFLSLD-ESP 318 (358)
T ss_pred CCcEEEecccCCHHHHHHhcCE--EEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhhcc--CccEEeCC-CCH
Confidence 356677777555 778988888 6643 34579999999999999866543 3334443 44544443 468
Q ss_pred HHHHHHHHHHhccc
Q 012474 410 REIETAIRRVTVEA 423 (463)
Q Consensus 410 ~~l~~~i~~~l~~~ 423 (463)
+++.++|.++++|+
T Consensus 319 ~~~a~~i~~l~~~~ 332 (358)
T cd03812 319 EIWAEEILKLKSED 332 (358)
T ss_pred HHHHHHHHHHHhCc
Confidence 99999999999994
No 101
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.37 E-value=0.00035 Score=67.89 Aligned_cols=110 Identities=15% Similarity=0.136 Sum_probs=71.3
Q ss_pred CCCceeecc--Ch---hhhhcCCCCccccccc---C-hhhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCCc
Q 012474 336 GRGHIVKWA--PQ---QEVLAHPAVGGFWTHN---G-WNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERK 406 (463)
Q Consensus 336 ~~~~~~~~v--pq---~~lL~~~~~~~~I~hg---G-~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~ 406 (463)
+++.+..+. ++ ..+++.+++ |+.-. | -.++.||+++|+|+|+.... .....+... ..|...+
T Consensus 252 ~~v~~~~~~~~~~~~~~~~~~~ad~--~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~----~~~~~i~~~-~~g~~~~-- 322 (372)
T cd03792 252 PDIHVLTLPPVSDLEVNALQRASTV--VLQKSIREGFGLTVTEALWKGKPVIAGPVG----GIPLQIEDG-ETGFLVD-- 322 (372)
T ss_pred CCeEEEecCCCCHHHHHHHHHhCeE--EEeCCCccCCCHHHHHHHHcCCCEEEcCCC----CchhhcccC-CceEEeC--
Confidence 556677776 43 357788888 87533 2 35999999999999987643 233445553 5666544
Q ss_pred cCHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012474 407 FERREIETAIRRVTVEAE-GQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILS 462 (463)
Q Consensus 407 ~t~~~l~~~i~~~l~~~~-~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 462 (463)
+.+.+..+|.+++.+++ .+.+.+++++. ..+.-+.+..++++++.+++
T Consensus 323 -~~~~~a~~i~~ll~~~~~~~~~~~~a~~~-------~~~~~s~~~~~~~~~~~~~~ 371 (372)
T cd03792 323 -TVEEAAVRILYLLRDPELRRKMGANAREH-------VRENFLITRHLKDYLYLISK 371 (372)
T ss_pred -CcHHHHHHHHHHHcCHHHHHHHHHHHHHH-------HHHHcCHHHHHHHHHHHHHh
Confidence 45678889999998832 22233333322 22456688888888888765
No 102
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=98.30 E-value=0.00011 Score=73.80 Aligned_cols=168 Identities=13% Similarity=0.095 Sum_probs=91.6
Q ss_pred CeEEEEecCCcccCCHHHHHHHHHHHh---cCCCceEEEEcCCCCCCCccCCCCchhHHHHhcCCCceeeccCh---hhh
Q 012474 276 KSVMYVSFGSIVVVNVTEFLEIAWGLA---NSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIVKWAPQ---QEV 349 (463)
Q Consensus 276 ~~~v~vs~Gs~~~~~~~~~~~~~~al~---~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpq---~~l 349 (463)
+.++++..|.... .+.+..+++++. +.+.++++.-.+.. . ..+.-..+.++.+.++.+....+. ..+
T Consensus 290 ~~~~i~~vGrl~~--~Kg~~~li~a~~~l~~~~~~lvi~G~g~~--~---~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~ 362 (473)
T TIGR02095 290 DVPLFGVISRLTQ--QKGVDLLLAALPELLELGGQLVVLGTGDP--E---LEEALRELAERYPGNVRVIIGYDEALAHLI 362 (473)
T ss_pred CCCEEEEEecCcc--ccChHHHHHHHHHHHHcCcEEEEECCCCH--H---HHHHHHHHHHHCCCcEEEEEcCCHHHHHHH
Confidence 3456666777653 223333444443 33455554432210 0 000111222333455555544454 357
Q ss_pred hcCCCCcccccc---cCh-hhHHHHHhhCCceecccccc--chhhhHHHHHHHhhceeecCCccCHHHHHHHHHHHhc--
Q 012474 350 LAHPAVGGFWTH---NGW-NSTLESICEGVPMICQPCFG--DQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTV-- 421 (463)
Q Consensus 350 L~~~~~~~~I~h---gG~-~s~~eal~~GvP~l~~P~~~--DQ~~na~rv~~~~G~G~~l~~~~t~~~l~~~i~~~l~-- 421 (463)
++.+++ +|.= -|. .+..||+++|+|.|+....+ |.-.+....... +.|..++. -+++++.++|.+++.
T Consensus 363 ~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~-~~G~l~~~-~d~~~la~~i~~~l~~~ 438 (473)
T TIGR02095 363 YAGADF--ILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAES-GTGFLFEE-YDPGALLAALSRALRLY 438 (473)
T ss_pred HHhCCE--EEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCC-CceEEeCC-CCHHHHHHHHHHHHHHH
Confidence 888888 7742 244 48899999999999866532 222111000222 67777775 788999999999887
Q ss_pred --cchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhcC
Q 012474 422 --EAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILSF 463 (463)
Q Consensus 422 --~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 463 (463)
+ ++.+ +++++.. ....-+-++.++++++..+++
T Consensus 439 ~~~---~~~~---~~~~~~~---~~~~fsw~~~a~~~~~~Y~~l 473 (473)
T TIGR02095 439 RQD---PSLW---EALQKNA---MSQDFSWDKSAKQYVELYRSL 473 (473)
T ss_pred hcC---HHHH---HHHHHHH---hccCCCcHHHHHHHHHHHHhC
Confidence 4 2222 2232222 224677788888888877653
No 103
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.29 E-value=0.00012 Score=73.27 Aligned_cols=170 Identities=12% Similarity=0.134 Sum_probs=89.6
Q ss_pred CeEEEEecCCcccCCHHHHHHHHHHHhc---CCCceEEEEcCCCCCCCccCCCCchhHHHHhcCCCce-eeccCh--hhh
Q 012474 276 KSVMYVSFGSIVVVNVTEFLEIAWGLAN---SRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHI-VKWAPQ--QEV 349 (463)
Q Consensus 276 ~~~v~vs~Gs~~~~~~~~~~~~~~al~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~vpq--~~l 349 (463)
+.++++..|.... .+.+..+++++.. .+.+++++-.+.. . ..+--....++.+.++.+ ..|-.+ ..+
T Consensus 281 ~~~~i~~vGRl~~--~KG~~~li~a~~~l~~~~~~lvivG~g~~----~-~~~~l~~l~~~~~~~v~~~~g~~~~~~~~~ 353 (466)
T PRK00654 281 DAPLFAMVSRLTE--QKGLDLVLEALPELLEQGGQLVLLGTGDP----E-LEEAFRALAARYPGKVGVQIGYDEALAHRI 353 (466)
T ss_pred CCcEEEEeecccc--ccChHHHHHHHHHHHhcCCEEEEEecCcH----H-HHHHHHHHHHHCCCcEEEEEeCCHHHHHHH
Confidence 4456666777653 3334444444433 3556655532210 0 000011222333444443 355322 257
Q ss_pred hcCCCCccccc---ccCh-hhHHHHHhhCCceecccccc--chhhhHHHHHHHhhceeecCCccCHHHHHHHHHHHhccc
Q 012474 350 LAHPAVGGFWT---HNGW-NSTLESICEGVPMICQPCFG--DQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVEA 423 (463)
Q Consensus 350 L~~~~~~~~I~---hgG~-~s~~eal~~GvP~l~~P~~~--DQ~~na~rv~~~~G~G~~l~~~~t~~~l~~~i~~~l~~~ 423 (463)
++.+++ +|. +-|. .+..||+++|+|.|+....+ |.-.+...-... +-|..++. -+++++.++|.+++...
T Consensus 354 ~~~aDv--~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~-~~G~lv~~-~d~~~la~~i~~~l~~~ 429 (466)
T PRK00654 354 YAGADM--FLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGE-ATGFVFDD-FNAEDLLRALRRALELY 429 (466)
T ss_pred HhhCCE--EEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCC-CceEEeCC-CCHHHHHHHHHHHHHHh
Confidence 888888 774 3344 48899999999999865432 322111111232 67877775 78899999999988631
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012474 424 EGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILS 462 (463)
Q Consensus 424 ~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 462 (463)
+.... .+++++.. ....-+-++.++++.+..++
T Consensus 430 ~~~~~---~~~~~~~~---~~~~fsw~~~a~~~~~lY~~ 462 (466)
T PRK00654 430 RQPPL---WRALQRQA---MAQDFSWDKSAEEYLELYRR 462 (466)
T ss_pred cCHHH---HHHHHHHH---hccCCChHHHHHHHHHHHHH
Confidence 00111 12222222 22456677777777776553
No 104
>PLN02949 transferase, transferring glycosyl groups
Probab=98.25 E-value=0.00033 Score=69.59 Aligned_cols=112 Identities=18% Similarity=0.087 Sum_probs=69.2
Q ss_pred cCCCceeeccChh---hhhcCCCCccccc---ccCh-hhHHHHHhhCCceeccccccchhhhHHHHHH-Hhh-ceeecCC
Q 012474 335 DGRGHIVKWAPQQ---EVLAHPAVGGFWT---HNGW-NSTLESICEGVPMICQPCFGDQLVNARYVSH-VWR-VGLHLER 405 (463)
Q Consensus 335 ~~~~~~~~~vpq~---~lL~~~~~~~~I~---hgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~-~~G-~G~~l~~ 405 (463)
.+++.+..++|+. ++|..+++ +|+ +-|. .++.||+++|+|+|+....+-- ...+.. .-| .|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~~--~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~---~eIV~~~~~g~tG~l~-- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAVA--GLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPK---MDIVLDEDGQQTGFLA-- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcE--EEeCCccCCCChHHHHHHHcCCcEEEeCCCCCc---ceeeecCCCCcccccC--
Confidence 4678888999854 47888887 763 2333 3899999999999998754310 001111 001 23222
Q ss_pred ccCHHHHHHHHHHHhccc-h-HHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012474 406 KFERREIETAIRRVTVEA-E-GQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILS 462 (463)
Q Consensus 406 ~~t~~~l~~~i~~~l~~~-~-~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 462 (463)
-+.++++++|.++++++ + ...|.+++++-.+ .-+.++..+++.+.+++
T Consensus 407 -~~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~--------~FS~e~~~~~~~~~i~~ 456 (463)
T PLN02949 407 -TTVEEYADAILEVLRMRETERLEIAAAARKRAN--------RFSEQRFNEDFKDAIRP 456 (463)
T ss_pred -CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH--------HcCHHHHHHHHHHHHHH
Confidence 27899999999999842 1 2334444443322 25677777777776654
No 105
>PRK10125 putative glycosyl transferase; Provisional
Probab=98.25 E-value=0.0024 Score=62.54 Aligned_cols=154 Identities=12% Similarity=0.007 Sum_probs=84.7
Q ss_pred EEEecCCcccCCHHHHHHHHHHHhcCCCce-EEEEcCCCCCCCccCCCCchhHHHHhcCCCceeeccC-h---hhhhcCC
Q 012474 279 MYVSFGSIVVVNVTEFLEIAWGLANSRVPF-LWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIVKWAP-Q---QEVLAHP 353 (463)
Q Consensus 279 v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp-q---~~lL~~~ 353 (463)
+++..|.........+..+++|+..++.++ ++.++.+. ...+ .++....+.. + .++++.+
T Consensus 243 ~il~v~~~~~~~~Kg~~~li~A~~~l~~~~~L~ivG~g~-------~~~~--------~~v~~~g~~~~~~~l~~~y~~a 307 (405)
T PRK10125 243 KIAVVAHDLRYDGKTDQQLVREMMALGDKIELHTFGKFS-------PFTA--------GNVVNHGFETDKRKLMSALNQM 307 (405)
T ss_pred EEEEEEeccccCCccHHHHHHHHHhCCCCeEEEEEcCCC-------cccc--------cceEEecCcCCHHHHHHHHHhC
Confidence 344444422223344577888888765443 34444321 0011 1224445543 2 4456667
Q ss_pred CCcccccc----cChhhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCCccCHHHHHHHHHHHhccchHHHHH
Q 012474 354 AVGGFWTH----NGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVEAEGQEMR 429 (463)
Q Consensus 354 ~~~~~I~h----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~t~~~l~~~i~~~l~~~~~~~~~ 429 (463)
++ ||.- |--+++.||+++|+|+|.....+ ..+ +..+ +-|..++. -+.++|+++++..+.+ +.+.
T Consensus 308 Dv--fV~pS~~Egfp~vilEAmA~G~PVVat~~gG----~~E-iv~~-~~G~lv~~-~d~~~La~~~~~~~~~---~~~~ 375 (405)
T PRK10125 308 DA--LVFSSRVDNYPLILCEALSIGVPVIATHSDA----ARE-VLQK-SGGKTVSE-EEVLQLAQLSKPEIAQ---AVFG 375 (405)
T ss_pred CE--EEECCccccCcCHHHHHHHcCCCEEEeCCCC----hHH-hEeC-CcEEEECC-CCHHHHHhccCHHHHH---Hhhh
Confidence 77 7753 23468999999999999987754 222 3333 56887775 6778888754322222 1111
Q ss_pred HHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhcC
Q 012474 430 ERIMHLKEKLELSLLEAGSSYQSLERLVDHILSF 463 (463)
Q Consensus 430 ~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 463 (463)
+...+.+++. ...-+.+..+++.++..+++
T Consensus 376 ~~~~~~r~~~----~~~fs~~~~~~~y~~lY~~l 405 (405)
T PRK10125 376 TTLAEFSQRS----RAAYSGQQMLEEYVNFYQNL 405 (405)
T ss_pred hHHHHHHHHH----HHhCCHHHHHHHHHHHHHhC
Confidence 1112222222 25677888888888877653
No 106
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.23 E-value=9.3e-06 Score=77.40 Aligned_cols=158 Identities=14% Similarity=0.147 Sum_probs=89.1
Q ss_pred CCCeEEEEecCCcccCC-H---HHHHHHHHHHhcC-CCceEEEEcCCCCCCCccCCCCchhHHHHhc--CCCceeeccC-
Q 012474 274 AAKSVMYVSFGSIVVVN-V---TEFLEIAWGLANS-RVPFLWVVRPGLVPGVEWLEPLPKGFLEMLD--GRGHIVKWAP- 345 (463)
Q Consensus 274 ~~~~~v~vs~Gs~~~~~-~---~~~~~~~~al~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~vp- 345 (463)
..++.+++++=...... . ..+..+++++.+. +.++||....... ....+.+... +|+.++.-++
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~--------~~~~i~~~l~~~~~v~~~~~l~~ 249 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPR--------GSDIIIEKLKKYDNVRLIEPLGY 249 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HH--------HHHHHHHHHTT-TTEEEE----H
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCch--------HHHHHHHHhcccCCEEEECCCCH
Confidence 46789999984444433 2 3455566777666 6678888763210 1122322222 4777775555
Q ss_pred --hhhhhcCCCCcccccccChhhHH-HHHhhCCceeccccccchhhhHHHHHHHhhceeecCCccCHHHHHHHHHHHhcc
Q 012474 346 --QQEVLAHPAVGGFWTHNGWNSTL-ESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVE 422 (463)
Q Consensus 346 --q~~lL~~~~~~~~I~hgG~~s~~-eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~t~~~l~~~i~~~l~~ 422 (463)
...+|+++++ +|+..| ++. ||.+.|+|+|.+ -|+...-+-+.. |..+. -..+.++|.+++.+++.+
T Consensus 250 ~~~l~ll~~a~~--vvgdSs--GI~eEa~~lg~P~v~i---R~~geRqe~r~~--~~nvl--v~~~~~~I~~ai~~~l~~ 318 (346)
T PF02350_consen 250 EEYLSLLKNADL--VVGDSS--GIQEEAPSLGKPVVNI---RDSGERQEGRER--GSNVL--VGTDPEAIIQAIEKALSD 318 (346)
T ss_dssp HHHHHHHHHESE--EEESSH--HHHHHGGGGT--EEEC---SSS-S-HHHHHT--TSEEE--ETSSHHHHHHHHHHHHH-
T ss_pred HHHHHHHhcceE--EEEcCc--cHHHHHHHhCCeEEEe---cCCCCCHHHHhh--cceEE--eCCCHHHHHHHHHHHHhC
Confidence 4678889999 999999 566 999999999999 333333333332 44444 248999999999999986
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 012474 423 AEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHIL 461 (463)
Q Consensus 423 ~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 461 (463)
.....+..... .-.+..++.+++++.|+
T Consensus 319 ---~~~~~~~~~~~--------npYgdG~as~rI~~~Lk 346 (346)
T PF02350_consen 319 ---KDFYRKLKNRP--------NPYGDGNASERIVEILK 346 (346)
T ss_dssp ---HHHHHHHHCS----------TT-SS-HHHHHHHHHH
T ss_pred ---hHHHHhhccCC--------CCCCCCcHHHHHHHhhC
Confidence 34443333211 12335566677776654
No 107
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.20 E-value=0.00022 Score=71.88 Aligned_cols=117 Identities=15% Similarity=0.137 Sum_probs=69.0
Q ss_pred cCCCcee-eccCh--hhhhcCCCCcccccc---cCh-hhHHHHHhhCCceecccccc--chhhhHHHHHHHhhceeecCC
Q 012474 335 DGRGHIV-KWAPQ--QEVLAHPAVGGFWTH---NGW-NSTLESICEGVPMICQPCFG--DQLVNARYVSHVWRVGLHLER 405 (463)
Q Consensus 335 ~~~~~~~-~~vpq--~~lL~~~~~~~~I~h---gG~-~s~~eal~~GvP~l~~P~~~--DQ~~na~rv~~~~G~G~~l~~ 405 (463)
.+|+.+. .+... ..++..+++ ++.- -|. .+.+||+++|+|+|+....+ |.-.+....... |.|..++.
T Consensus 350 ~~~v~~~~~~~~~~~~~~~~~aDv--~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~-~~G~~~~~ 426 (476)
T cd03791 350 PGRVAVLIGYDEALAHLIYAGADF--FLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGE-GTGFVFEG 426 (476)
T ss_pred CCcEEEEEeCCHHHHHHHHHhCCE--EECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCC-CCeEEeCC
Confidence 4566554 44322 347788888 7743 122 47899999999999766432 221111111132 57888876
Q ss_pred ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 012474 406 KFERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHIL 461 (463)
Q Consensus 406 ~~t~~~l~~~i~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 461 (463)
-+++++.++|.+++...+ -++...++++... ...-+-++.++++++..+
T Consensus 427 -~~~~~l~~~i~~~l~~~~---~~~~~~~~~~~~~---~~~fsw~~~a~~~~~~y~ 475 (476)
T cd03791 427 -YNADALLAALRRALALYR---DPEAWRKLQRNAM---AQDFSWDRSAKEYLELYR 475 (476)
T ss_pred -CCHHHHHHHHHHHHHHHc---CHHHHHHHHHHHh---ccCCChHHHHHHHHHHHh
Confidence 779999999999986411 1222223333222 244566777788777654
No 108
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.16 E-value=0.00017 Score=69.48 Aligned_cols=129 Identities=14% Similarity=0.096 Sum_probs=79.6
Q ss_pred CeEEEEecCCcc--c-CCHHHHHHHHHHHhcCCCceEEEEcCCCCCCCccCCCCchhHHHHh--cCCCceeeccC---hh
Q 012474 276 KSVMYVSFGSIV--V-VNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEML--DGRGHIVKWAP---QQ 347 (463)
Q Consensus 276 ~~~v~vs~Gs~~--~-~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~vp---q~ 347 (463)
++.|++++=-.. . ...+.+..+++++...+.++++...... ++ ...+-+.+.+.. .+++.+.+-++ ..
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~-p~---~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l 276 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNAD-AG---SRIINEAIEEYVNEHPNFRLFKSLGQERYL 276 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCC-CC---chHHHHHHHHHhcCCCCEEEECCCChHHHH
Confidence 467777775432 2 4567789999999887766666543321 11 001112222222 35677775544 46
Q ss_pred hhhcCCCCcccccccChhhHHHHHhhCCceeccccccchhhhHHHHHHH-hhceeecCCccCHHHHHHHHHHHhc
Q 012474 348 EVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHV-WRVGLHLERKFERREIETAIRRVTV 421 (463)
Q Consensus 348 ~lL~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~-~G~G~~l~~~~t~~~l~~~i~~~l~ 421 (463)
.+++++++ +|+.++.+- .||.+.|+|+|.+- + |-+-. -|..+.+ -..++++|.+++.++++
T Consensus 277 ~Ll~~a~~--vitdSSggi-~EA~~lg~Pvv~l~---~------R~e~~~~g~nvl~-vg~~~~~I~~a~~~~~~ 338 (365)
T TIGR03568 277 SLLKNADA--VIGNSSSGI-IEAPSFGVPTINIG---T------RQKGRLRADSVID-VDPDKEEIVKAIEKLLD 338 (365)
T ss_pred HHHHhCCE--EEEcChhHH-HhhhhcCCCEEeec---C------CchhhhhcCeEEE-eCCCHHHHHHHHHHHhC
Confidence 78889999 999875444 99999999999764 2 22221 1333221 14789999999999654
No 109
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.15 E-value=0.002 Score=62.62 Aligned_cols=108 Identities=17% Similarity=0.112 Sum_probs=66.4
Q ss_pred CCCceeeccChh---hhhcCCCCcccc------cccCh-hhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCC
Q 012474 336 GRGHIVKWAPQQ---EVLAHPAVGGFW------THNGW-NSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLER 405 (463)
Q Consensus 336 ~~~~~~~~vpq~---~lL~~~~~~~~I------~hgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~ 405 (463)
+|+.+.+++|+. .++.++++.++- +.++. +.+.|++++|+|+|..++ ...++.. + |..+..
T Consensus 254 ~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~~~~-~-~~~~~~ 324 (373)
T cd04950 254 PNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVRRYE-D-EVVLIA 324 (373)
T ss_pred CCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHHhhc-C-cEEEeC
Confidence 678889999854 467788883321 23333 458999999999998763 2333332 4 333332
Q ss_pred ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012474 406 KFERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILS 462 (463)
Q Consensus 406 ~~t~~~l~~~i~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 462 (463)
-+.+++.++|.+++.+++....++ + .. +. ...+-+..++++.+.+++
T Consensus 325 -~d~~~~~~ai~~~l~~~~~~~~~~-~---~~-~~----~~~sW~~~a~~~~~~l~~ 371 (373)
T cd04950 325 -DDPEEFVAAIEKALLEDGPARERR-R---LR-LA----AQNSWDARAAEMLEALQE 371 (373)
T ss_pred -CCHHHHHHHHHHHHhcCCchHHHH-H---HH-HH----HHCCHHHHHHHHHHHHHh
Confidence 489999999999876532111221 1 11 22 345667777777766654
No 110
>PLN02316 synthase/transferase
Probab=98.15 E-value=0.0014 Score=70.14 Aligned_cols=118 Identities=10% Similarity=0.043 Sum_probs=75.0
Q ss_pred CCCceeeccChh---hhhcCCCCccccccc---C-hhhHHHHHhhCCceecccccc--chhhh-------HHHHHHHhhc
Q 012474 336 GRGHIVKWAPQQ---EVLAHPAVGGFWTHN---G-WNSTLESICEGVPMICQPCFG--DQLVN-------ARYVSHVWRV 399 (463)
Q Consensus 336 ~~~~~~~~vpq~---~lL~~~~~~~~I~hg---G-~~s~~eal~~GvP~l~~P~~~--DQ~~n-------a~rv~~~~G~ 399 (463)
+++.+....+.. .+++.+++ |+.-. | -.+.+||+++|+|.|+....+ |.... ++..-.. +-
T Consensus 900 ~rV~f~g~~de~lah~iyaaADi--flmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~-~t 976 (1036)
T PLN02316 900 DRARLCLTYDEPLSHLIYAGADF--ILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLE-PN 976 (1036)
T ss_pred CeEEEEecCCHHHHHHHHHhCcE--EEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccC-Cc
Confidence 455555444442 57888888 88432 2 368999999999888765432 22211 1111111 45
Q ss_pred eeecCCccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012474 400 GLHLERKFERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILS 462 (463)
Q Consensus 400 G~~l~~~~t~~~l~~~i~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 462 (463)
|...+. .+++.|..+|.+++.+ |.+....+++..+..+...-|-.+.+++.++..++
T Consensus 977 Gflf~~-~d~~aLa~AL~raL~~-----~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY~~ 1033 (1036)
T PLN02316 977 GFSFDG-ADAAGVDYALNRAISA-----WYDGRDWFNSLCKRVMEQDWSWNRPALDYMELYHS 1033 (1036)
T ss_pred eEEeCC-CCHHHHHHHHHHHHhh-----hhhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 776665 7899999999999975 34444555666665555667778888888776654
No 111
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=98.10 E-value=0.011 Score=57.90 Aligned_cols=178 Identities=10% Similarity=0.149 Sum_probs=100.6
Q ss_pred ccccccCCCCeEEEEecCCcccC------C-H---HHHHHHHHHHhcCCCceEEEEcCCCCC--CCccCCCCchhHHHHh
Q 012474 267 ISWLDKQAAKSVMYVSFGSIVVV------N-V---TEFLEIAWGLANSRVPFLWVVRPGLVP--GVEWLEPLPKGFLEML 334 (463)
Q Consensus 267 ~~~l~~~~~~~~v~vs~Gs~~~~------~-~---~~~~~~~~al~~~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~~ 334 (463)
..|+...+.+++|.+|.-..... . . +.+..+++.+.+.++++++........ +.+ .......+.+.+
T Consensus 225 ~~~~~~~~~~~~Vgisvr~~~~~~~~~~~~~~~Y~~~la~~i~~Li~~g~~Vv~lp~~~~~~~~~~d-D~~~~~~l~~~~ 303 (426)
T PRK10017 225 QHWLDVAAQQKTVAITLRELAPFDKRLGTTQQAYEKAFAGVVNRIIDEGYQVIALSTCTGIDSYNKD-DRMVALNLRQHV 303 (426)
T ss_pred hhhhcccccCCEEEEEecccccccccccccHHHHHHHHHHHHHHHHHCCCeEEEEecccCccCCCCc-hHHHHHHHHHhc
Confidence 34554434556888886543311 1 2 223445555555688877654321100 000 000123333443
Q ss_pred cC--CCcee--eccCh--hhhhcCCCCcccccccChhhHHHHHhhCCceeccccccchhhhHHHHHHHhhceee-cCC-c
Q 012474 335 DG--RGHIV--KWAPQ--QEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLH-LER-K 406 (463)
Q Consensus 335 ~~--~~~~~--~~vpq--~~lL~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~-l~~-~ 406 (463)
+. +..++ ++-+. ..++.++++ +|.. =+-++.-|+..|||.+.++. | +-....++. +|.... .+. .
T Consensus 304 ~~~~~~~vi~~~~~~~e~~~iIs~~dl--~ig~-RlHa~I~a~~~gvP~i~i~Y--~-~K~~~~~~~-lg~~~~~~~~~~ 376 (426)
T PRK10017 304 SDPARYHVVMDELNDLEMGKILGACEL--TVGT-RLHSAIISMNFGTPAIAINY--E-HKSAGIMQQ-LGLPEMAIDIRH 376 (426)
T ss_pred ccccceeEecCCCChHHHHHHHhhCCE--EEEe-cchHHHHHHHcCCCEEEeee--h-HHHHHHHHH-cCCccEEechhh
Confidence 32 22332 33343 478888888 9854 34577889999999999998 3 333444466 688755 455 7
Q ss_pred cCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 012474 407 FERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHI 460 (463)
Q Consensus 407 ~t~~~l~~~i~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 460 (463)
++.++|.+.+.++++|. +.+++..++--+.++. ...+.+.++++.|
T Consensus 377 l~~~~Li~~v~~~~~~r--~~~~~~l~~~v~~~r~------~~~~~~~~~~~~~ 422 (426)
T PRK10017 377 LLDGSLQAMVADTLGQL--PALNARLAEAVSRERQ------TGMQMVQSVLERI 422 (426)
T ss_pred CCHHHHHHHHHHHHhCH--HHHHHHHHHHHHHHHH------HHHHHHHHHHHHh
Confidence 89999999999999984 3455554444444442 2344555555544
No 112
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.08 E-value=0.00088 Score=67.33 Aligned_cols=111 Identities=13% Similarity=0.106 Sum_probs=71.3
Q ss_pred cCCCceeeccChhhhhcCCCCcccccc----cChhhHHHHHhhCCceeccccccchhhhHHHHHHH----hh-ceeecCC
Q 012474 335 DGRGHIVKWAPQQEVLAHPAVGGFWTH----NGWNSTLESICEGVPMICQPCFGDQLVNARYVSHV----WR-VGLHLER 405 (463)
Q Consensus 335 ~~~~~~~~~vpq~~lL~~~~~~~~I~h----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~----~G-~G~~l~~ 405 (463)
.+|+.+.+...-.+++..+++ +|.- |--+++.||+++|+|+|+.. .......++.. +| .|..++.
T Consensus 353 ~~~V~f~G~~~v~~~l~~aDv--~vlpS~~Eg~p~~vlEAma~G~PVVatd----~g~~~elv~~~~~~~~g~~G~lv~~ 426 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLDV--LVLTSISEGQPLVILEAMAAGIPVVATD----VGSCRELIEGADDEALGPAGEVVPP 426 (475)
T ss_pred CCeEEEcCCccHHHHHHhCCE--EEeCchhhcCChHHHHHHHcCCCEEECC----CCChHHHhcCCcccccCCceEEECC
Confidence 366777775445778888888 6643 23478999999999999853 33344444441 12 6777765
Q ss_pred ccCHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHH
Q 012474 406 KFERREIETAIRRVTVEAE-GQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDH 459 (463)
Q Consensus 406 ~~t~~~l~~~i~~~l~~~~-~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~ 459 (463)
.+.+++.++|.++++|++ ...+.+++++ ...+.-+-++.++++.+.
T Consensus 427 -~d~~~la~ai~~ll~~~~~~~~~~~~a~~-------~v~~~~s~~~~~~~y~~l 473 (475)
T cd03813 427 -ADPEALARAILRLLKDPELRRAMGEAGRK-------RVERYYTLERMIDSYRRL 473 (475)
T ss_pred -CCHHHHHHHHHHHhcCHHHHHHHHHHHHH-------HHHHhCCHHHHHHHHHHH
Confidence 789999999999999832 2233333332 222444556666666554
No 113
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=98.04 E-value=0.00032 Score=68.12 Aligned_cols=100 Identities=13% Similarity=0.125 Sum_probs=69.4
Q ss_pred cCCCceeeccCh-hhhhcCCCCcccccc--cChhhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCCccCHHH
Q 012474 335 DGRGHIVKWAPQ-QEVLAHPAVGGFWTH--NGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERRE 411 (463)
Q Consensus 335 ~~~~~~~~~vpq-~~lL~~~~~~~~I~h--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~t~~~ 411 (463)
.+++.+.++.++ ..++..+++=++.++ |...++.||+++|+|+|+..... .....++.. ..|..++. -+.++
T Consensus 260 ~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~~-~~G~lv~~-~d~~~ 334 (372)
T cd04949 260 EDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIEDG-ENGYLVPK-GDIEA 334 (372)
T ss_pred cceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHcccC-CCceEeCC-CcHHH
Confidence 355667777776 678999988333343 33469999999999999865321 134556653 67777775 78999
Q ss_pred HHHHHHHHhccch-HHHHHHHHHHHHHHH
Q 012474 412 IETAIRRVTVEAE-GQEMRERIMHLKEKL 439 (463)
Q Consensus 412 l~~~i~~~l~~~~-~~~~~~~a~~~~~~~ 439 (463)
+.++|.++++|++ ...+.+++++..+.+
T Consensus 335 la~~i~~ll~~~~~~~~~~~~a~~~~~~~ 363 (372)
T cd04949 335 LAEAIIELLNDPKLLQKFSEAAYENAERY 363 (372)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHHHh
Confidence 9999999999853 445666666554444
No 114
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=98.01 E-value=0.0023 Score=64.34 Aligned_cols=114 Identities=12% Similarity=0.126 Sum_probs=76.5
Q ss_pred cCCCceeeccChhhhhcCCCCccccc---ccCh-hhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCC---cc
Q 012474 335 DGRGHIVKWAPQQEVLAHPAVGGFWT---HNGW-NSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLER---KF 407 (463)
Q Consensus 335 ~~~~~~~~~vpq~~lL~~~~~~~~I~---hgG~-~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~---~~ 407 (463)
.+++.+.++.+..+++..+++ +|. .-|. .++.||+++|+|+|+.-..+ .+...++.. .-|..++. .-
T Consensus 375 ~~~V~f~G~~~~~~~~~~adv--~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI~~g-~nG~lv~~~~~~~ 448 (500)
T TIGR02918 375 QDYIHLKGHRNLSEVYKDYEL--YLSASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFIEDN-KNGYLIPIDEEED 448 (500)
T ss_pred CCeEEEcCCCCHHHHHHhCCE--EEEcCccccccHHHHHHHHhCCCEEEecCCC---CCHHHccCC-CCEEEEeCCcccc
Confidence 355677788877889999988 775 3343 69999999999999865421 234455552 45666652 12
Q ss_pred C----HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012474 408 E----RREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILS 462 (463)
Q Consensus 408 t----~~~l~~~i~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 462 (463)
+ .++++++|.++++++....|.+++++.++ .-+.+..+++..+.+++
T Consensus 449 d~~~~~~~la~~I~~ll~~~~~~~~~~~a~~~a~--------~fs~~~v~~~w~~ll~~ 499 (500)
T TIGR02918 449 DEDQIITALAEKIVEYFNSNDIDAFHEYSYQIAE--------GFLTANIIEKWKKLVRE 499 (500)
T ss_pred chhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH--------hcCHHHHHHHHHHHHhh
Confidence 2 78899999999965323445555555443 34577777777777765
No 115
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.95 E-value=0.00025 Score=69.04 Aligned_cols=115 Identities=15% Similarity=0.203 Sum_probs=80.0
Q ss_pred hcCCCceeeccCh---hhhhcCCCCcccccc----cCh-hhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCC
Q 012474 334 LDGRGHIVKWAPQ---QEVLAHPAVGGFWTH----NGW-NSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLER 405 (463)
Q Consensus 334 ~~~~~~~~~~vpq---~~lL~~~~~~~~I~h----gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~ 405 (463)
...++.+.+++|+ .++++.+++ +|.- .|. .++.||+++|+|+|+.... .+...+++. ..|..+..
T Consensus 255 l~~~v~~~G~~~~~~l~~~~~~aDv--~v~pS~~~E~f~~~~lEAma~G~PVI~s~~g----g~~Eiv~~~-~~G~~l~~ 327 (380)
T PRK15484 255 IGDRCIMLGGQPPEKMHNYYPLADL--VVVPSQVEEAFCMVAVEAMAAGKPVLASTKG----GITEFVLEG-ITGYHLAE 327 (380)
T ss_pred cCCcEEEeCCCCHHHHHHHHHhCCE--EEeCCCCccccccHHHHHHHcCCCEEEeCCC----CcHhhcccC-CceEEEeC
Confidence 4466778889985 456888888 7753 343 5788999999999987653 345566663 67875543
Q ss_pred ccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012474 406 KFERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILS 462 (463)
Q Consensus 406 ~~t~~~l~~~i~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 462 (463)
..+++++.++|.++++| ++.+ ++++..++...+.-+-+..++++.+.+++
T Consensus 328 ~~d~~~la~~I~~ll~d---~~~~----~~~~~ar~~~~~~fsw~~~a~~~~~~l~~ 377 (380)
T PRK15484 328 PMTSDSIISDINRTLAD---PELT----QIAEQAKDFVFSKYSWEGVTQRFEEQIHN 377 (380)
T ss_pred CCCHHHHHHHHHHHHcC---HHHH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 47899999999999998 4433 23333333333566788888888887764
No 116
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.95 E-value=0.00015 Score=70.65 Aligned_cols=136 Identities=18% Similarity=0.161 Sum_probs=78.5
Q ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHhcCCCceEEEEcCCCCCCCccCCCCchhHHHHhc------CCCceeeccChh
Q 012474 274 AAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLD------GRGHIVKWAPQQ 347 (463)
Q Consensus 274 ~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~vpq~ 347 (463)
+++.++|.+|......+++.+....+-|+..+.-.+|....... -.+++.+.+. +++.+..+.|+.
T Consensus 282 p~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~--------~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ 353 (468)
T PF13844_consen 282 PEDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPAS--------GEARLRRRFAAHGVDPDRIIFSPVAPRE 353 (468)
T ss_dssp -SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTT--------HHHHHHHHHHHTTS-GGGEEEEE---HH
T ss_pred CCCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHH--------HHHHHHHHHHHcCCChhhEEEcCCCCHH
Confidence 35679999999999999999999999999999888888764321 1123333222 566667777764
Q ss_pred hhh---cCCCCcccc---cccChhhHHHHHhhCCceeccccccchhhh-HHHHHHHhhceeecCCccCHHHHHHHHHHHh
Q 012474 348 EVL---AHPAVGGFW---THNGWNSTLESICEGVPMICQPCFGDQLVN-ARYVSHVWRVGLHLERKFERREIETAIRRVT 420 (463)
Q Consensus 348 ~lL---~~~~~~~~I---~hgG~~s~~eal~~GvP~l~~P~~~DQ~~n-a~rv~~~~G~G~~l~~~~t~~~l~~~i~~~l 420 (463)
+.| ..+|+ ++ ..+|.+|++|||+.|||+|.+|--.=.-.. |..+.. +|+.-.+- .+.++-.+.--++-
T Consensus 354 ehl~~~~~~DI--~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~-lGl~ElIA--~s~~eYv~~Av~La 428 (468)
T PF13844_consen 354 EHLRRYQLADI--CLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRA-LGLPELIA--DSEEEYVEIAVRLA 428 (468)
T ss_dssp HHHHHGGG-SE--EE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHH-HT-GGGB---SSHHHHHHHHHHHH
T ss_pred HHHHHhhhCCE--EeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHH-cCCchhcC--CCHHHHHHHHHHHh
Confidence 443 44555 54 467889999999999999999943322223 445555 57765433 46677777666777
Q ss_pred cc
Q 012474 421 VE 422 (463)
Q Consensus 421 ~~ 422 (463)
+|
T Consensus 429 ~D 430 (468)
T PF13844_consen 429 TD 430 (468)
T ss_dssp H-
T ss_pred CC
Confidence 77
No 117
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=97.93 E-value=0.00029 Score=66.03 Aligned_cols=157 Identities=18% Similarity=0.202 Sum_probs=98.3
Q ss_pred CCeEEEEecCCcccCCHHHHHHHHHHHh----cC-CCceEEEEcCCCCCCCccCCCCchhHHHHhcC--CCcee---ecc
Q 012474 275 AKSVMYVSFGSIVVVNVTEFLEIAWGLA----NS-RVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDG--RGHIV---KWA 344 (463)
Q Consensus 275 ~~~~v~vs~Gs~~~~~~~~~~~~~~al~----~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~v 344 (463)
.+..+.+|+=-..... +.++.+.+++. +. +..++..+.... . +-+-..+++.+ |+.+. +|.
T Consensus 203 ~~~~iLvT~HRreN~~-~~~~~i~~al~~i~~~~~~~~viyp~H~~~--~------v~e~~~~~L~~~~~v~li~pl~~~ 273 (383)
T COG0381 203 DKKYILVTAHRRENVG-EPLEEICEALREIAEEYPDVIVIYPVHPRP--R------VRELVLKRLKNVERVKLIDPLGYL 273 (383)
T ss_pred cCcEEEEEcchhhccc-ccHHHHHHHHHHHHHhCCCceEEEeCCCCh--h------hhHHHHHHhCCCCcEEEeCCcchH
Confidence 4568888764433333 44555555444 33 334444443321 1 11111234443 36654 788
Q ss_pred ChhhhhcCCCCcccccccChhhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCCccCHHHHHHHHHHHhccch
Q 012474 345 PQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVEAE 424 (463)
Q Consensus 345 pq~~lL~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~t~~~l~~~i~~~l~~~~ 424 (463)
+...++.++.+ ++|-.| |-.-||-..|+|++++=...+++. +++. |.-+.+ ..+.+.+.+++.+++++
T Consensus 274 ~f~~L~~~a~~--iltDSG-giqEEAp~lg~Pvl~lR~~TERPE---~v~a--gt~~lv--g~~~~~i~~~~~~ll~~-- 341 (383)
T COG0381 274 DFHNLMKNAFL--ILTDSG-GIQEEAPSLGKPVLVLRDTTERPE---GVEA--GTNILV--GTDEENILDAATELLED-- 341 (383)
T ss_pred HHHHHHHhceE--EEecCC-chhhhHHhcCCcEEeeccCCCCcc---ceec--CceEEe--CccHHHHHHHHHHHhhC--
Confidence 88999999999 999988 667899999999999988888887 3333 444433 36789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 012474 425 GQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHIL 461 (463)
Q Consensus 425 ~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 461 (463)
++..++...... -.+..++.+++++.|.
T Consensus 342 -~~~~~~m~~~~n--------pYgdg~as~rIv~~l~ 369 (383)
T COG0381 342 -EEFYERMSNAKN--------PYGDGNASERIVEILL 369 (383)
T ss_pred -hHHHHHHhcccC--------CCcCcchHHHHHHHHH
Confidence 555544333332 2333336666666664
No 118
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.86 E-value=0.021 Score=57.11 Aligned_cols=114 Identities=20% Similarity=0.133 Sum_probs=73.5
Q ss_pred cCCCceeeccCh-hhhhcCCCCccccc---ccC-hhhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCCccCH
Q 012474 335 DGRGHIVKWAPQ-QEVLAHPAVGGFWT---HNG-WNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFER 409 (463)
Q Consensus 335 ~~~~~~~~~vpq-~~lL~~~~~~~~I~---hgG-~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~t~ 409 (463)
.+++.+.+|..+ ..+|..+++ ||. .-| -+++.||+++|+|+|+... ..+...+.+. ..|..++. -+.
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaADV--fVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV~dG-~nG~LVp~-~D~ 525 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMNV--FILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECFIEG-VSGFILDD-AQT 525 (578)
T ss_pred CCcEEECCChhhHHHHHHhCCE--EEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHcccC-CcEEEECC-CCh
Confidence 367788888765 668999999 885 345 4699999999999997664 3456667764 77887775 445
Q ss_pred HHHHHHHH---HHhccchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012474 410 REIETAIR---RVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILS 462 (463)
Q Consensus 410 ~~l~~~i~---~~l~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 462 (463)
+.+.+++. .+... .+...++++..++-..+.-+.+..+++..+.+.+
T Consensus 526 ~aLa~ai~lA~aL~~l------l~~~~~mg~~ARe~V~e~FS~e~Mv~~y~ki~~~ 575 (578)
T PRK15490 526 VNLDQACRYAEKLVNL------WRSRTGICQQTQSFLQERFTVEHMVGTFVKTIAS 575 (578)
T ss_pred hhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Confidence 55555442 22222 1111223333333334667888888888887654
No 119
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.69 E-value=0.0011 Score=65.29 Aligned_cols=111 Identities=14% Similarity=0.116 Sum_probs=73.7
Q ss_pred CCCceeeccChh---hhhcCCCCcccccccC----hhhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCCccC
Q 012474 336 GRGHIVKWAPQQ---EVLAHPAVGGFWTHNG----WNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFE 408 (463)
Q Consensus 336 ~~~~~~~~vpq~---~lL~~~~~~~~I~hgG----~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~t 408 (463)
+++.+.+|+++. .++..+++.++|...- -++++||+++|+|+|+... ......+.+. +.|..++..-+
T Consensus 289 ~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~v----gg~~e~i~~~-~~G~l~~~~~~ 363 (407)
T cd04946 289 ISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNV----GGTPEIVDNG-GNGLLLSKDPT 363 (407)
T ss_pred ceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCC----CCcHHHhcCC-CcEEEeCCCCC
Confidence 467788999975 4555444433765442 3689999999999988553 3356666663 58887776568
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHH
Q 012474 409 RREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLV 457 (463)
Q Consensus 409 ~~~l~~~i~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~ 457 (463)
.+++.++|.++++|+ ..+ .+|++..++...+.-+.+...++++
T Consensus 364 ~~~la~~I~~ll~~~---~~~---~~m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 364 PNELVSSLSKFIDNE---EEY---QTMREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred HHHHHHHHHHHHhCH---HHH---HHHHHHHHHHHHHHcCHHHhHHHhc
Confidence 999999999999983 222 2334444444445556666666654
No 120
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=97.67 E-value=0.00017 Score=61.50 Aligned_cols=81 Identities=20% Similarity=0.268 Sum_probs=63.4
Q ss_pred hcCCCceeeccC--h-hhhhcCCCCcccccc----cChhhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCCc
Q 012474 334 LDGRGHIVKWAP--Q-QEVLAHPAVGGFWTH----NGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERK 406 (463)
Q Consensus 334 ~~~~~~~~~~vp--q-~~lL~~~~~~~~I~h----gG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~ 406 (463)
..+++.+..+++ + ..++..+++ +|+. |+..++.||+++|+|+|+. +...+...+... +.|..++.
T Consensus 71 ~~~~i~~~~~~~~~~l~~~~~~~di--~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~~~~-~~g~~~~~- 142 (172)
T PF00534_consen 71 LKENIIFLGYVPDDELDELYKSSDI--FVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEIINDG-VNGFLFDP- 142 (172)
T ss_dssp CGTTEEEEESHSHHHHHHHHHHTSE--EEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHSGTT-TSEEEEST-
T ss_pred cccccccccccccccccccccccee--ccccccccccccccccccccccceeec----cccCCceeeccc-cceEEeCC-
Confidence 346778889988 3 678889898 8876 5667999999999999863 456666777773 77888886
Q ss_pred cCHHHHHHHHHHHhcc
Q 012474 407 FERREIETAIRRVTVE 422 (463)
Q Consensus 407 ~t~~~l~~~i~~~l~~ 422 (463)
-+.+++.++|.+++++
T Consensus 143 ~~~~~l~~~i~~~l~~ 158 (172)
T PF00534_consen 143 NDIEELADAIEKLLND 158 (172)
T ss_dssp TSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCC
Confidence 5999999999999998
No 121
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=0.00029 Score=55.00 Aligned_cols=124 Identities=15% Similarity=0.176 Sum_probs=75.5
Q ss_pred EEEecCCcccCCHHH-HH--HHHHHHhcCCCceEEEEcCCCCCCCccCCCCchhHHHHhcCCCceee--ccC-hhhhhcC
Q 012474 279 MYVSFGSIVVVNVTE-FL--EIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIVK--WAP-QQEVLAH 352 (463)
Q Consensus 279 v~vs~Gs~~~~~~~~-~~--~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~vp-q~~lL~~ 352 (463)
+|||.||... +-.. .. ++..-.+...-++|+..+.+. .+++ ++. ++.+ +-+ -+.+...
T Consensus 2 ifVTvGstf~-~f~rlv~k~e~~el~~~i~e~lIvQyGn~d------~kpv-agl--------~v~~F~~~~kiQsli~d 65 (161)
T COG5017 2 IFVTVGSTFY-PFNRLVLKIEVLELTELIQEELIVQYGNGD------IKPV-AGL--------RVYGFDKEEKIQSLIHD 65 (161)
T ss_pred eEEEecCccc-hHHHHHhhHHHHHHHHHhhhheeeeecCCC------cccc-ccc--------EEEeechHHHHHHHhhc
Confidence 7899999843 2111 11 122222222347788887643 1111 112 3443 334 3667777
Q ss_pred CCCcccccccChhhHHHHHhhCCceeccccc--------cchhhhHHHHHHHhhceeecCC-cc-CHHHHHHHHHHHhc
Q 012474 353 PAVGGFWTHNGWNSTLESICEGVPMICQPCF--------GDQLVNARYVSHVWRVGLHLER-KF-ERREIETAIRRVTV 421 (463)
Q Consensus 353 ~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~--------~DQ~~na~rv~~~~G~G~~l~~-~~-t~~~l~~~i~~~l~ 421 (463)
+++ +|+|+|.||+..++..++|.+++|-. .+|-.-|..+.+ ++.-..... .. =.+.+.....+++.
T Consensus 66 arI--VISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae-~~~vv~~spte~~L~a~l~~s~~~v~~ 141 (161)
T COG5017 66 ARI--VISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAE-INYVVACSPTELVLQAGLQVSVADVLH 141 (161)
T ss_pred ceE--EEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHh-cCceEEEcCCchhhHHhHhhhhhhhcC
Confidence 787 99999999999999999999999954 357777888887 577666654 11 23344444444443
No 122
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.59 E-value=0.011 Score=60.28 Aligned_cols=75 Identities=11% Similarity=0.106 Sum_probs=51.8
Q ss_pred CceeeccChh-hhhcCCCCcccccc---cC-hhhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCCccCHHHH
Q 012474 338 GHIVKWAPQQ-EVLAHPAVGGFWTH---NG-WNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREI 412 (463)
Q Consensus 338 ~~~~~~vpq~-~lL~~~~~~~~I~h---gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~t~~~l 412 (463)
+.+.++.++. ++++.+++ ||.= =| -+++.||+++|+|+|+.-..+... +.. |.+..+. -+.+++
T Consensus 603 V~FLG~~dd~~~lyasaDV--FVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V~~--g~nGll~--~D~Eaf 671 (794)
T PLN02501 603 LNFLKGRDHADDSLHGYKV--FINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----FRS--FPNCLTY--KTSEDF 671 (794)
T ss_pred EEecCCCCCHHHHHHhCCE--EEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----Eee--cCCeEec--CCHHHH
Confidence 3445666653 58988888 8753 23 368999999999999987765321 222 3222222 468999
Q ss_pred HHHHHHHhccc
Q 012474 413 ETAIRRVTVEA 423 (463)
Q Consensus 413 ~~~i~~~l~~~ 423 (463)
.++|.++|.++
T Consensus 672 AeAI~~LLsd~ 682 (794)
T PLN02501 672 VAKVKEALANE 682 (794)
T ss_pred HHHHHHHHhCc
Confidence 99999999983
No 123
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=97.44 E-value=0.0041 Score=59.00 Aligned_cols=131 Identities=11% Similarity=0.035 Sum_probs=77.7
Q ss_pred CCeEEEEecCCccc---CCHHHHHHHHHHHhcCCCceEEEEcCCCCCCCccCCCCchhHHHHhcCCCceee--ccCh-hh
Q 012474 275 AKSVMYVSFGSIVV---VNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIVK--WAPQ-QE 348 (463)
Q Consensus 275 ~~~~v~vs~Gs~~~---~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~vpq-~~ 348 (463)
+++.|.+..|+... .+.+.+.++++.+.+.++++++..++.. ..+..+.+.+..+. ..+.+ -++| ..
T Consensus 178 ~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~------e~~~~~~i~~~~~~-~~l~g~~sL~el~a 250 (319)
T TIGR02193 178 PAPYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDA------EKQRAERIAEALPG-AVVLPKMSLAEVAA 250 (319)
T ss_pred CCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHH------HHHHHHHHHhhCCC-CeecCCCCHHHHHH
Confidence 35566666665333 7788899999988766777666544321 00112223322222 12322 2445 77
Q ss_pred hhcCCCCcccccccChhhHHHHHhhCCceeccccccchhhhHHHHHHHhhce---eecC-C-ccCHHHHHHHHHHHh
Q 012474 349 VLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVG---LHLE-R-KFERREIETAIRRVT 420 (463)
Q Consensus 349 lL~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G---~~l~-~-~~t~~~l~~~i~~~l 420 (463)
++++|++ +|+. -.|.+.=|.+.|+|+|.+ ++ +.+..+..= +|-. +.-. . .++++++.+++.++|
T Consensus 251 li~~a~l--~I~~-DSgp~HlAaa~g~P~i~l--fg--~t~p~~~~P-~~~~~~~~~~~~~~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 251 LLAGADA--VVGV-DTGLTHLAAALDKPTVTL--YG--ATDPGRTGG-YGKPNVALLGESGANPTPDEVLAALEELL 319 (319)
T ss_pred HHHcCCE--EEeC-CChHHHHHHHcCCCEEEE--EC--CCCHhhccc-CCCCceEEccCccCCCCHHHHHHHHHhhC
Confidence 9999999 9987 678999999999999976 22 111112111 1211 1111 2 799999999998875
No 124
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=97.33 E-value=0.0012 Score=62.93 Aligned_cols=111 Identities=19% Similarity=0.325 Sum_probs=79.5
Q ss_pred cCCCceeeccChhhh---hcCCCCcccccc-------cCh------hhHHHHHhhCCceeccccccchhhhHHHHHHHhh
Q 012474 335 DGRGHIVKWAPQQEV---LAHPAVGGFWTH-------NGW------NSTLESICEGVPMICQPCFGDQLVNARYVSHVWR 398 (463)
Q Consensus 335 ~~~~~~~~~vpq~~l---L~~~~~~~~I~h-------gG~------~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G 398 (463)
.+|+.+.+|+|+.++ |.. +.+++... +.+ +-+.+++++|+|+|+. ++...+..|++. +
T Consensus 206 ~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V~~~-~ 279 (333)
T PRK09814 206 SANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFIVEN-G 279 (333)
T ss_pred CCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHHHhC-C
Confidence 356688899998665 443 33333221 111 2277889999999984 556788999995 9
Q ss_pred ceeecCCccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHH
Q 012474 399 VGLHLERKFERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDH 459 (463)
Q Consensus 399 ~G~~l~~~~t~~~l~~~i~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~ 459 (463)
+|..++ +.+++.+++.++. +++...|++++++++++++ .|.-..+++++++..
T Consensus 280 ~G~~v~---~~~el~~~l~~~~-~~~~~~m~~n~~~~~~~~~----~g~~~~~~~~~~~~~ 332 (333)
T PRK09814 280 LGFVVD---SLEELPEIIDNIT-EEEYQEMVENVKKISKLLR----NGYFTKKALVDAIKE 332 (333)
T ss_pred ceEEeC---CHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHh----cchhHHHHHHHHHhc
Confidence 999987 5678999998864 3345679999999999998 566667777766643
No 125
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.33 E-value=0.021 Score=50.56 Aligned_cols=48 Identities=23% Similarity=0.169 Sum_probs=34.9
Q ss_pred CCCceeeccCh----hhhhcCCCCcccccccC----hhhHHHHHhhCCceeccccccc
Q 012474 336 GRGHIVKWAPQ----QEVLAHPAVGGFWTHNG----WNSTLESICEGVPMICQPCFGD 385 (463)
Q Consensus 336 ~~~~~~~~vpq----~~lL~~~~~~~~I~hgG----~~s~~eal~~GvP~l~~P~~~D 385 (463)
.|+.+.+++++ ..++..+++ +|+-.. .+++.||+++|+|+|+.+..+.
T Consensus 161 ~~v~~~~~~~~~~~~~~~~~~~di--~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~ 216 (229)
T cd01635 161 DRVIFLGGLDPEELLALLLAAADV--FVLPSLREGFGLVVLEAMACGLPVIATDVGGP 216 (229)
T ss_pred ccEEEeCCCCcHHHHHHHhhcCCE--EEecccccCcChHHHHHHhCCCCEEEcCCCCc
Confidence 55677777532 334444777 887775 6899999999999999887543
No 126
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=97.30 E-value=0.061 Score=48.90 Aligned_cols=108 Identities=19% Similarity=0.121 Sum_probs=69.9
Q ss_pred CCccCHHHHHHHHHHHHhCCCeEEEEeCCCCC-CCCCCCCCceEEeCCCCCCCcccccccHHHHHHHHHHhcCchHHHHH
Q 012474 23 PLQGHINPMLQLASILYSKGFSITIIHTNFNS-PNPSNYPHFSFNSISESLWESEVSTENAISLLTVLNDKCVVPFQDCL 101 (463)
Q Consensus 23 ~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 101 (463)
+-.-|+.-+-.+.++|.++||+|.+-+-++.. ...-+.-||.+..+...-. ..+.+.+.....+ .-.|
T Consensus 8 ~n~~hvhfFk~lI~elekkG~ev~iT~rd~~~v~~LLd~ygf~~~~Igk~g~------~tl~~Kl~~~~eR-----~~~L 76 (346)
T COG1817 8 GNPPHVHFFKNLIWELEKKGHEVLITCRDFGVVTELLDLYGFPYKSIGKHGG------VTLKEKLLESAER-----VYKL 76 (346)
T ss_pred CCcchhhHHHHHHHHHHhCCeEEEEEEeecCcHHHHHHHhCCCeEeecccCC------ccHHHHHHHHHHH-----HHHH
Confidence 34468888999999999999999888775432 1111224777777763211 1112111111111 1145
Q ss_pred HHHHhCCCCCCCceEEEeCCchhhHHHHHHHcCCCeEEEeCchhH
Q 012474 102 AKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSIS 146 (463)
Q Consensus 102 ~~l~~~~~~~~~pD~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~ 146 (463)
.++... ++||+.+. -.++.+..+|.-+|+|++.+.-..-.
T Consensus 77 ~ki~~~----~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~ehA 116 (346)
T COG1817 77 SKIIAE----FKPDVAIG-KHSPELPRVAFGLGIPSIIFVDNEHA 116 (346)
T ss_pred HHHHhh----cCCceEee-cCCcchhhHHhhcCCceEEecCChhH
Confidence 555554 78999999 56788899999999999998877443
No 127
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=97.22 E-value=0.0007 Score=55.07 Aligned_cols=127 Identities=19% Similarity=0.222 Sum_probs=68.1
Q ss_pred EEEEecCCccc-CCHHHHHH-HHHHHhcCCCceEEEEcCCCCCCCccCCCCchhHHHHhcCCCceeeccCh-hhhhcCCC
Q 012474 278 VMYVSFGSIVV-VNVTEFLE-IAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIVKWAPQ-QEVLAHPA 354 (463)
Q Consensus 278 ~v~vs~Gs~~~-~~~~~~~~-~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpq-~~lL~~~~ 354 (463)
+.++++|+... ...+.+.. +++.+.+...++-+.+-+. .|+.+.+...+|+.+.+|++. .+++..++
T Consensus 3 ~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~----------~~~~l~~~~~~~v~~~g~~~e~~~~l~~~d 72 (135)
T PF13692_consen 3 LYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGN----------GPDELKRLRRPNVRFHGFVEELPEILAAAD 72 (135)
T ss_dssp EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECE----------SS-HHCCHHHCTEEEE-S-HHHHHHHHC-S
T ss_pred ccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeC----------CHHHHHHhcCCCEEEcCCHHHHHHHHHhCC
Confidence 45566666553 23343333 5555554333343333222 112222222457788899875 77899999
Q ss_pred Ccccccc--cC-hhhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCCccCHHHHHHHHHHHhcc
Q 012474 355 VGGFWTH--NG-WNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVE 422 (463)
Q Consensus 355 ~~~~I~h--gG-~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~t~~~l~~~i~~~l~~ 422 (463)
+.+..+. .| -+++.|++++|+|+|+.+. .....++.. +.|..+ . -+++++.++|.++++|
T Consensus 73 v~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-----~~~~~~~~~-~~~~~~-~-~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 73 VGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-----GAEGIVEED-GCGVLV-A-NDPEELAEAIERLLND 135 (135)
T ss_dssp EEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-----HCHCHS----SEEEE--T-T-HHHHHHHHHHHHH-
T ss_pred EEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-----chhhheeec-CCeEEE-C-CCHHHHHHHHHHHhcC
Confidence 8555432 23 4899999999999999776 133344443 888777 3 5999999999999875
No 128
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.14 E-value=0.0054 Score=60.39 Aligned_cols=151 Identities=19% Similarity=0.247 Sum_probs=94.8
Q ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHhcCCCceEEEEcCCCCCCCccCCCCchhHHHH------hcCCCceeeccCh-
Q 012474 274 AAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEM------LDGRGHIVKWAPQ- 346 (463)
Q Consensus 274 ~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~vpq- 346 (463)
+++.+||.+|--..-.++..+...++-|+..+..++|......... .+|... .++++.+.+-++-
T Consensus 756 p~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge--------~rf~ty~~~~Gl~p~riifs~va~k~ 827 (966)
T KOG4626|consen 756 PEDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGE--------QRFRTYAEQLGLEPDRIIFSPVAAKE 827 (966)
T ss_pred CCCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccch--------HHHHHHHHHhCCCccceeeccccchH
Confidence 3567999999887778999999999999999999999987653211 222211 1234444433332
Q ss_pred ----hhhhcCCCCcccccccChhhHHHHHhhCCceeccccccchhhhH-HHHHHHhhceeecCCccCHHHHHHHHHHHhc
Q 012474 347 ----QEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNA-RYVSHVWRVGLHLERKFERREIETAIRRVTV 421 (463)
Q Consensus 347 ----~~lL~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~~na-~rv~~~~G~G~~l~~~~t~~~l~~~i~~~l~ 421 (463)
.-.|..-.++-+.+. |+.|.+|.|+.|||||.+|.-.--...| ..+.. +|+|-.+-+ +.++-.+.--++=.
T Consensus 828 eHvrr~~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~-~Gl~hliak--~~eEY~~iaV~Lat 903 (966)
T KOG4626|consen 828 EHVRRGQLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTA-LGLGHLIAK--NREEYVQIAVRLAT 903 (966)
T ss_pred HHHHhhhhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHH-cccHHHHhh--hHHHHHHHHHHhhc
Confidence 223333334447777 7899999999999999999765544444 34455 688875443 44444444444555
Q ss_pred cchHHHHHHHHHHHHHHHHHH
Q 012474 422 EAEGQEMRERIMHLKEKLELS 442 (463)
Q Consensus 422 ~~~~~~~~~~a~~~~~~~~~~ 442 (463)
| . +..++++.+++++
T Consensus 904 d---~---~~L~~lr~~l~~~ 918 (966)
T KOG4626|consen 904 D---K---EYLKKLRAKLRKA 918 (966)
T ss_pred C---H---HHHHHHHHHHHHH
Confidence 5 2 2344555555544
No 129
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=96.89 E-value=0.013 Score=47.74 Aligned_cols=104 Identities=14% Similarity=0.151 Sum_probs=64.9
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCcccccccHHHHHHHHHHhcCc
Q 012474 16 RVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSNYPHFSFNSISESLWESEVSTENAISLLTVLNDKCVV 95 (463)
Q Consensus 16 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (463)
||++++.....| ...+++.|.++||+|++++............++.+..++.... .....+. +
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~g~~V~ii~~~~~~~~~~~~~~i~~~~~~~~~k-------~~~~~~~-~------ 63 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKRGYDVHIITPRNDYEKYEIIEGIKVIRLPSPRK-------SPLNYIK-Y------ 63 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHCCCEEEEEEcCCCchhhhHhCCeEEEEecCCCC-------ccHHHHH-H------
Confidence 577777766555 5678999999999999999954433333346788887752211 1111111 1
Q ss_pred hHHHHHHHHHhCCCCCCCceEEEeCCchh---hHHHHHHHcC-CCeEEEeCc
Q 012474 96 PFQDCLAKLISNGDQEEPVTCLITDAIWH---FAQTVADTLR-LPRIVLRTS 143 (463)
Q Consensus 96 ~l~~~l~~l~~~~~~~~~pD~VI~D~~~~---~~~~~A~~~g-iP~v~~~~~ 143 (463)
. .+.++.+. .+||+|.+..... .+..++...| +|.+....+
T Consensus 64 --~-~l~k~ik~----~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~hg 108 (139)
T PF13477_consen 64 --F-RLRKIIKK----EKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVHG 108 (139)
T ss_pred --H-HHHHHhcc----CCCCEEEEecCChHHHHHHHHHHHcCCCCEEEEecC
Confidence 1 23344433 6899998776543 2345667788 888875554
No 130
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=96.74 E-value=0.21 Score=48.06 Aligned_cols=108 Identities=14% Similarity=0.135 Sum_probs=70.2
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCceE-EeCCCCCCCcccccccHHHHHHH
Q 012474 12 KKGRRVILFPLPLQGHINPMLQLASILYSK--GFSITIIHTNFNSPNPSNYPHFSF-NSISESLWESEVSTENAISLLTV 88 (463)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~ 88 (463)
+..|||+++-..+.|++.-..++.+.|+++ +.+|++++.+.........+.++- +.++... ......+.
T Consensus 3 ~~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~P~id~vi~~~~~~-------~~~~~~~~- 74 (352)
T PRK10422 3 KPFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSENPEINALYGIKNKK-------AGASEKIK- 74 (352)
T ss_pred CCCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhccCCCceEEEEecccc-------ccHHHHHH-
Confidence 346899999999999999999999999998 899999998765555444455533 2232110 00000011
Q ss_pred HHHhcCchHHHHHHHHHhCCCCCCCceEEEeCCchhhHHHHHHHcCCCeEE
Q 012474 89 LNDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIV 139 (463)
Q Consensus 89 ~~~~~~~~l~~~l~~l~~~~~~~~~pD~VI~D~~~~~~~~~A~~~giP~v~ 139 (463)
.+..++.++.+ .++|++|.-........++...|.+..+
T Consensus 75 -------~~~~l~~~lr~-----~~yD~vidl~~~~~s~ll~~l~~a~~ri 113 (352)
T PRK10422 75 -------NFFSLIKVLRA-----NKYDLIVNLTDQWMVALLVRLLNARVKI 113 (352)
T ss_pred -------HHHHHHHHHhh-----CCCCEEEEcccchHHHHHHHHhCCCeEE
Confidence 11234455554 6799999654444456677777887655
No 131
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=96.60 E-value=0.079 Score=50.91 Aligned_cols=103 Identities=11% Similarity=0.036 Sum_probs=68.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCceEE-eCCCCCCCcccccccHHHHHHHHHH
Q 012474 15 RRVILFPLPLQGHINPMLQLASILYSK--GFSITIIHTNFNSPNPSNYPHFSFN-SISESLWESEVSTENAISLLTVLND 91 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (463)
|||+++-..+.|++.-..++.+.|+++ +.+|++++.+......+..+.++-+ .++.. . . ... +
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~P~vd~vi~~~~~--~-~-----~~~-~----- 66 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPLLSRMPEVNEAIPMPLG--H-G-----ALE-I----- 66 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechhhHHHHhcCCccCEEEecccc--c-c-----hhh-h-----
Confidence 789999999999999999999999997 9999999987655544544555433 22211 0 0 000 0
Q ss_pred hcCchHHHHHHHHHhCCCCCCCceEEEeCCchhhHHHHHHHcCCCeEE
Q 012474 92 KCVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIV 139 (463)
Q Consensus 92 ~~~~~l~~~l~~l~~~~~~~~~pD~VI~D~~~~~~~~~A~~~giP~v~ 139 (463)
.....++..+.+ .++|++|.=....-...++...|+|.-.
T Consensus 67 ---~~~~~l~~~lr~-----~~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 67 ---GERRRLGHSLRE-----KRYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred ---HHHHHHHHHHHh-----cCCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 112234455555 6799999655455566677777887654
No 132
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=96.59 E-value=0.26 Score=47.21 Aligned_cols=105 Identities=12% Similarity=0.090 Sum_probs=68.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCce-EEeCCCCCCCcccccccHHHHHHHHHHh
Q 012474 16 RVILFPLPLQGHINPMLQLASILYSK--GFSITIIHTNFNSPNPSNYPHFS-FNSISESLWESEVSTENAISLLTVLNDK 92 (463)
Q Consensus 16 ~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (463)
||+++-..+.|++.-..++.++|.++ +.+|++++.+.+.......+.++ ++.++.... . . ... .+.
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~p~vd~vi~~~~~~~----~-~-~~~---~~~-- 69 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQETIPILSENPDINALYGLDRKKA----K-A-GER---KLA-- 69 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcChHHHHhcCCCccEEEEeChhhh----c-c-hHH---HHH--
Confidence 68999999999999999999999997 89999999976655444445554 333331100 0 0 000 010
Q ss_pred cCchHHHHHHHHHhCCCCCCCceEEEeCCchhhHHHHHHHcCCCeEE
Q 012474 93 CVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIV 139 (463)
Q Consensus 93 ~~~~l~~~l~~l~~~~~~~~~pD~VI~D~~~~~~~~~A~~~giP~v~ 139 (463)
....++..+.+ .++|++|.-.....+..++...|+|.-+
T Consensus 70 ---~~~~l~~~lr~-----~~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 70 ---NQFHLIKVLRA-----NRYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred ---HHHHHHHHHHh-----CCCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 11123455554 6799999655555667788888998655
No 133
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=96.51 E-value=0.0027 Score=47.84 Aligned_cols=64 Identities=17% Similarity=0.220 Sum_probs=48.8
Q ss_pred chhccccccCCCCeEEEEecCCcccC---CH--HHHHHHHHHHhcCCCceEEEEcCCCCCCCccCCCCchhH
Q 012474 264 QSCISWLDKQAAKSVMYVSFGSIVVV---NV--TEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGF 330 (463)
Q Consensus 264 ~~l~~~l~~~~~~~~v~vs~Gs~~~~---~~--~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 330 (463)
..+.+|+...++++.|++|+||.... .. ..+..++++++.++..+|..++...... +.++|+|+
T Consensus 28 ~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~~~~---lg~lP~nV 96 (97)
T PF06722_consen 28 AVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQRAE---LGELPDNV 96 (97)
T ss_dssp EEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCCCGG---CCS-TTTE
T ss_pred CCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHHHHh---hCCCCCCC
Confidence 34778998888999999999998763 22 4788999999999999999998765322 45566653
No 134
>PHA01633 putative glycosyl transferase group 1
Probab=96.43 E-value=0.029 Score=52.99 Aligned_cols=101 Identities=17% Similarity=0.129 Sum_probs=62.8
Q ss_pred cCCCcee---eccCh---hhhhcCCCCcccccc---cC-hhhHHHHHhhCCceecccc------ccch------hhhHHH
Q 012474 335 DGRGHIV---KWAPQ---QEVLAHPAVGGFWTH---NG-WNSTLESICEGVPMICQPC------FGDQ------LVNARY 392 (463)
Q Consensus 335 ~~~~~~~---~~vpq---~~lL~~~~~~~~I~h---gG-~~s~~eal~~GvP~l~~P~------~~DQ------~~na~r 392 (463)
++++.+. +++++ .++++.+++ ||.- =| -.++.||+++|+|+|+.-. .+|+ .++..-
T Consensus 200 ~~~V~f~g~~G~~~~~dl~~~y~~aDi--fV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~ 277 (335)
T PHA01633 200 PANVHFVAEFGHNSREYIFAFYGAMDF--TIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEE 277 (335)
T ss_pred CCcEEEEecCCCCCHHHHHHHHHhCCE--EEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHH
Confidence 4555766 45554 467888888 8853 24 3689999999999998633 2332 333333
Q ss_pred HH--HHhhceeecCCccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Q 012474 393 VS--HVWRVGLHLERKFERREIETAIRRVTVEAEGQEMRERIMHLKEKL 439 (463)
Q Consensus 393 v~--~~~G~G~~l~~~~t~~~l~~~i~~~l~~~~~~~~~~~a~~~~~~~ 439 (463)
.. .+ |.|..++. .++++++++|.+++...+.+....++++.++++
T Consensus 278 ~~~~~~-g~g~~~~~-~d~~~la~ai~~~~~~~~~~~~~~~~~~~a~~f 324 (335)
T PHA01633 278 YYDKEH-GQKWKIHK-FQIEDMANAIILAFELQDREERSMKLKELAKKY 324 (335)
T ss_pred hcCccc-CceeeecC-CCHHHHHHHHHHHHhccChhhhhHHHHHHHHhc
Confidence 32 33 66766665 899999999999955422122333444444443
No 135
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=96.33 E-value=0.26 Score=46.15 Aligned_cols=58 Identities=16% Similarity=0.098 Sum_probs=40.7
Q ss_pred ChhhhhcCCCCcccccccChhhHHHHHhhCCceeccccccchhhh----HHHHHHHhhceeecCC
Q 012474 345 PQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVN----ARYVSHVWRVGLHLER 405 (463)
Q Consensus 345 pq~~lL~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~~n----a~rv~~~~G~G~~l~~ 405 (463)
|+..+|..++. .|||---.+-++||+..|+|+.++|.-. +..- .+.+++. |+-..+..
T Consensus 221 Py~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~-~~~r~~r~~~~L~~~-g~~r~~~~ 282 (311)
T PF06258_consen 221 PYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG-RSGRFRRFHQSLEER-GAVRPFTG 282 (311)
T ss_pred cHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC-cchHHHHHHHHHHHC-CCEEECCC
Confidence 57788988886 2455555689999999999999999886 3332 2445553 66665544
No 136
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=96.31 E-value=0.29 Score=46.67 Aligned_cols=106 Identities=16% Similarity=0.043 Sum_probs=68.9
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCcccccccHHHHHHHHHH
Q 012474 14 GRRVILFPLPLQGHINPMLQLASILYSK--GFSITIIHTNFNSPNPSNYPHFSFNSISESLWESEVSTENAISLLTVLND 91 (463)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (463)
.|||+++-..+.|++.-.+++.+.|+++ +.+++++++..........+.++-+..-.... .. . .+
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~i~~~~p~I~~vi~~~~~~------~~--~---~~-- 67 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLNPEIDKVIIIDKKK------KG--L---GL-- 67 (334)
T ss_pred CceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHHHHhcChHhhhhccccccc------cc--c---ch--
Confidence 4899999999999999999999999998 69999999976554444334343321111000 00 0 00
Q ss_pred hcCchHHHHHHHHHhCCCCCCCceEEEeCCchhhHHHHHHHcCCCeEEE
Q 012474 92 KCVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVL 140 (463)
Q Consensus 92 ~~~~~l~~~l~~l~~~~~~~~~pD~VI~D~~~~~~~~~A~~~giP~v~~ 140 (463)
.....+.+.+.+ .++|+||.=....-...++...++|.-.-
T Consensus 68 ---~~~~~l~~~lr~-----~~yD~vidl~~~~ksa~l~~~~~~~~r~g 108 (334)
T COG0859 68 ---KERLALLRTLRK-----ERYDAVIDLQGLLKSALLALLLGIPFRIG 108 (334)
T ss_pred ---HHHHHHHHHhhc-----cCCCEEEECcccHHHHHHHHHhCCCcccc
Confidence 112224444443 56999997766666677777888887663
No 137
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.099 Score=51.59 Aligned_cols=104 Identities=14% Similarity=0.228 Sum_probs=76.0
Q ss_pred CCeEEEEecCCcccCCHHHHHHHHHHHhcCCCceEEEEcCCCCCCCccCCCCchhHHHHhc------CCCceeeccCh--
Q 012474 275 AKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLD------GRGHIVKWAPQ-- 346 (463)
Q Consensus 275 ~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~vpq-- 346 (463)
++.+||+|++...-..++.+...+.-++..+--++|..+++..+ ++-..+.+... ++.++.+-.|.
T Consensus 428 ~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~~------~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~ 501 (620)
T COG3914 428 EDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDDA------EINARLRDLAEREGVDSERLRFLPPAPNED 501 (620)
T ss_pred CCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCcH------HHHHHHHHHHHHcCCChhheeecCCCCCHH
Confidence 56799999999988999999999999999999999988775311 12333333222 44455555553
Q ss_pred -hhhhcCCCCcccc---cccChhhHHHHHhhCCceeccccccchhh
Q 012474 347 -QEVLAHPAVGGFW---THNGWNSTLESICEGVPMICQPCFGDQLV 388 (463)
Q Consensus 347 -~~lL~~~~~~~~I---~hgG~~s~~eal~~GvP~l~~P~~~DQ~~ 388 (463)
.+-+..+++ |+ --||+.|..|+|..|||+|..+ ++|+-
T Consensus 502 h~a~~~iADl--vLDTyPY~g~TTa~daLwm~vPVlT~~--G~~Fa 543 (620)
T COG3914 502 HRARYGIADL--VLDTYPYGGHTTASDALWMGVPVLTRV--GEQFA 543 (620)
T ss_pred HHHhhchhhe--eeecccCCCccchHHHHHhcCceeeec--cHHHH
Confidence 445556666 76 4799999999999999999887 66664
No 138
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=96.12 E-value=0.31 Score=46.51 Aligned_cols=102 Identities=12% Similarity=0.087 Sum_probs=66.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCceEE-eCCCCCCCcccccccHHHHHHHHHHh
Q 012474 16 RVILFPLPLQGHINPMLQLASILYSK--GFSITIIHTNFNSPNPSNYPHFSFN-SISESLWESEVSTENAISLLTVLNDK 92 (463)
Q Consensus 16 ~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (463)
||+++-..+.|++.-..++.++|++. +.+|++++.+.........+.++-+ .++.. .. ....
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~p~id~v~~~~~~--~~------~~~~------- 65 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAWCRPLLERMPEIRQAIDMPLG--HG------ALEL------- 65 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechhhHHHHhcCchhceeeecCCc--cc------chhh-------
Confidence 68999999999999999999999997 9999999986554444443444322 22211 00 0000
Q ss_pred cCchHHHHHHHHHhCCCCCCCceEEEeCCchhhHHHHHHHcCCCeEE
Q 012474 93 CVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIV 139 (463)
Q Consensus 93 ~~~~l~~~l~~l~~~~~~~~~pD~VI~D~~~~~~~~~A~~~giP~v~ 139 (463)
......+.++.+ .++|++|.-....-...++...|+|.-.
T Consensus 66 --~~~~~~~~~lr~-----~~yD~vi~l~~~~~s~ll~~~~~~~~ri 105 (334)
T TIGR02195 66 --TERRRLGRSLRE-----ERYDQAIVLPNSLKSALIPFFAGIPHRT 105 (334)
T ss_pred --hHHHHHHHHHhh-----cCCCEEEECCCCHHHHHHHHHcCCCcee
Confidence 011234455554 5799999866555566677777887543
No 139
>PRK14098 glycogen synthase; Provisional
Probab=96.03 E-value=0.059 Score=54.27 Aligned_cols=116 Identities=9% Similarity=-0.001 Sum_probs=72.6
Q ss_pred HHhcCCCceeeccCh---hhhhcCCCCccccccc---Ch-hhHHHHHhhCCceecccccc--chhhhHHHHHHHhhceee
Q 012474 332 EMLDGRGHIVKWAPQ---QEVLAHPAVGGFWTHN---GW-NSTLESICEGVPMICQPCFG--DQLVNARYVSHVWRVGLH 402 (463)
Q Consensus 332 ~~~~~~~~~~~~vpq---~~lL~~~~~~~~I~hg---G~-~s~~eal~~GvP~l~~P~~~--DQ~~na~rv~~~~G~G~~ 402 (463)
++.++++.+..+++. ..+++.+++ ++.-. |. .+.+||+++|+|.|+....+ |...+ ..++. +-|..
T Consensus 358 ~~~~~~V~~~g~~~~~~~~~~~a~aDi--~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~--~~~~~-~~G~l 432 (489)
T PRK14098 358 EEHPEQVSVQTEFTDAFFHLAIAGLDM--LLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE--VSEDK-GSGFI 432 (489)
T ss_pred HHCCCCEEEEEecCHHHHHHHHHhCCE--EEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec--CCCCC-CceeE
Confidence 334567778887776 368888888 77532 22 47889999999888776532 22111 11123 66777
Q ss_pred cCCccCHHHHHHHHHHHh---ccchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012474 403 LERKFERREIETAIRRVT---VEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILS 462 (463)
Q Consensus 403 l~~~~t~~~l~~~i~~~l---~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 462 (463)
.+. .+++++.++|.+++ .| +.. .++++ ++++...-+-++.++++++..++
T Consensus 433 ~~~-~d~~~la~ai~~~l~~~~~---~~~---~~~~~---~~~~~~~fsw~~~a~~y~~lY~~ 485 (489)
T PRK14098 433 FHD-YTPEALVAKLGEALALYHD---EER---WEELV---LEAMERDFSWKNSAEEYAQLYRE 485 (489)
T ss_pred eCC-CCHHHHHHHHHHHHHHHcC---HHH---HHHHH---HHHhcCCCChHHHHHHHHHHHHH
Confidence 765 78999999999876 34 221 12222 22233566778888888777654
No 140
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=95.99 E-value=0.14 Score=48.61 Aligned_cols=132 Identities=12% Similarity=-0.030 Sum_probs=74.5
Q ss_pred CeEEE-EecCCccc--CCHHHHHHHHHHHhcCCCceEEEEcCCCCCCCccCCCCchhHHHHhcCCCceee--ccCh-hhh
Q 012474 276 KSVMY-VSFGSIVV--VNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIVK--WAPQ-QEV 349 (463)
Q Consensus 276 ~~~v~-vs~Gs~~~--~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~vpq-~~l 349 (463)
++.|. +-.||... .+.+.+.++++.+.+.+.++++..++.. + .+.-+.+.+.. .++.+.+ .+.+ ..+
T Consensus 178 ~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~----e--~~~~~~i~~~~-~~~~l~g~~sL~elaal 250 (322)
T PRK10964 178 GPYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEH----E--EQRAKRLAEGF-PYVEVLPKLSLEQVARV 250 (322)
T ss_pred CCeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHH----H--HHHHHHHHccC-CcceecCCCCHHHHHHH
Confidence 34444 44444332 7888899999888776777665434321 0 00112221111 1222332 2344 678
Q ss_pred hcCCCCcccccccChhhHHHHHhhCCceeccccccchhhh------HHHHHHHhhceeecCCccCHHHHHHHHHHHhc
Q 012474 350 LAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVN------ARYVSHVWRVGLHLERKFERREIETAIRRVTV 421 (463)
Q Consensus 350 L~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~~n------a~rv~~~~G~G~~l~~~~t~~~l~~~i~~~l~ 421 (463)
+.++++ +|+. -.|.+.=|.+.|+|+|.+=-..|...+ ...+.. .+..+. .++++++.+++.++|.
T Consensus 251 i~~a~l--~I~n-DSGp~HlA~A~g~p~valfGpt~p~~~~p~~~~~~~~~~---~~~cm~-~I~~e~V~~~~~~~l~ 321 (322)
T PRK10964 251 LAGAKA--VVSV-DTGLSHLTAALDRPNITLYGPTDPGLIGGYGKNQHACRS---PGKSMA-DLSAETVFQKLETLIS 321 (322)
T ss_pred HHhCCE--EEec-CCcHHHHHHHhCCCEEEEECCCCcccccCCCCCceeecC---CCcccc-cCCHHHHHHHHHHHhh
Confidence 999999 9988 568999999999999987322222111 111110 011111 6899999999888764
No 141
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=95.98 E-value=0.058 Score=45.38 Aligned_cols=93 Identities=11% Similarity=0.095 Sum_probs=57.4
Q ss_pred hCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCc--c-cccccHHHHHHHHHHhcCchHHHHHHHHHhCCCCCCCceE
Q 012474 40 SKGFSITIIHTNFNSPNPSNYPHFSFNSISESLWES--E-VSTENAISLLTVLNDKCVVPFQDCLAKLISNGDQEEPVTC 116 (463)
Q Consensus 40 ~rGh~Vt~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~pD~ 116 (463)
++||+|+|+|....... . +|++...+...-... . ....++...+ ... ......+.+|.+.+ ..||+
T Consensus 1 q~gh~v~fl~~~~~~~~-~--~GV~~~~y~~~~~~~~~~~~~~~~~e~~~----~rg-~av~~a~~~L~~~G---f~PDv 69 (171)
T PF12000_consen 1 QRGHEVVFLTERKRPPI-P--PGVRVVRYRPPRGPTPGTHPYVRDFEAAV----LRG-QAVARAARQLRAQG---FVPDV 69 (171)
T ss_pred CCCCEEEEEecCCCCCC-C--CCcEEEEeCCCCCCCCCCCcccccHHHHH----HHH-HHHHHHHHHHHHcC---CCCCE
Confidence 47999999996433222 2 588888776421111 1 1112222111 111 22334556666654 88999
Q ss_pred EEeCCchhhHHHHHHHc-CCCeEEEeCc
Q 012474 117 LITDAIWHFAQTVADTL-RLPRIVLRTS 143 (463)
Q Consensus 117 VI~D~~~~~~~~~A~~~-giP~v~~~~~ 143 (463)
||....+=.++-+-+.+ ++|.+.++-.
T Consensus 70 I~~H~GWGe~Lflkdv~P~a~li~Y~E~ 97 (171)
T PF12000_consen 70 IIAHPGWGETLFLKDVFPDAPLIGYFEF 97 (171)
T ss_pred EEEcCCcchhhhHHHhCCCCcEEEEEEE
Confidence 99999887788888888 8999887665
No 142
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=95.97 E-value=0.054 Score=40.55 Aligned_cols=83 Identities=12% Similarity=0.147 Sum_probs=54.1
Q ss_pred ccChhhHHHHHhhCCceeccccccchhhhHHHHHHHhh-ceeecCCccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Q 012474 361 HNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWR-VGLHLERKFERREIETAIRRVTVEAEGQEMRERIMHLKEKL 439 (463)
Q Consensus 361 hgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G-~G~~l~~~~t~~~l~~~i~~~l~~~~~~~~~~~a~~~~~~~ 439 (463)
+|-..-+.|++++|+|+|+-.. ......+.. | -++.. . +.+++.++|..+++|+ ...++-+++..+.+
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~~~--~~~~~~~--~-~~~el~~~i~~ll~~~--~~~~~ia~~a~~~v 77 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIFED--GEHIITY--N-DPEELAEKIEYLLENP--EERRRIAKNARERV 77 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHcCC--CCeEEEE--C-CHHHHHHHHHHHHCCH--HHHHHHHHHHHHHH
Confidence 4556789999999999998764 222222222 3 22222 2 8999999999999994 23444444444444
Q ss_pred HHHHhhCCChHHHHHHHHH
Q 012474 440 ELSLLEAGSSYQSLERLVD 458 (463)
Q Consensus 440 ~~~~~~~g~~~~~~~~~~~ 458 (463)
. ...+....++++++
T Consensus 78 ~----~~~t~~~~~~~il~ 92 (92)
T PF13524_consen 78 L----KRHTWEHRAEQILE 92 (92)
T ss_pred H----HhCCHHHHHHHHHC
Confidence 4 57777777777763
No 143
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=95.88 E-value=0.62 Score=43.10 Aligned_cols=102 Identities=13% Similarity=0.056 Sum_probs=63.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCCCCCCCCCCCceE-EeCCCCCCCcccccccHHHHHHHHHHh
Q 012474 16 RVILFPLPLQGHINPMLQLASILYSK--GFSITIIHTNFNSPNPSNYPHFSF-NSISESLWESEVSTENAISLLTVLNDK 92 (463)
Q Consensus 16 ~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (463)
||+++-..+.|++.-+.++.++|+++ +-+|++++.+.........+.++- +.++... .....
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~~~~l~~~~p~id~v~~~~~~~-----~~~~~---------- 65 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPWFAPLLELMPEVDRVIVLPKKH-----GKLGL---------- 65 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChhhHHHHhcCCccCEEEEcCCcc-----cccch----------
Confidence 68999999999999999999999998 489999999755444443344432 2222110 00000
Q ss_pred cCchHHHHHHHHHhCCCCCCCceEEEeCCchhhHHHHHHHcCCCeEE
Q 012474 93 CVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIV 139 (463)
Q Consensus 93 ~~~~l~~~l~~l~~~~~~~~~pD~VI~D~~~~~~~~~A~~~giP~v~ 139 (463)
......+..+.+ .++|+++.=........++...+++...
T Consensus 66 --~~~~~~~~~l~~-----~~~D~vi~~~~~~~~~~~~~~~~~~~~~ 105 (279)
T cd03789 66 --GARRRLARALRR-----RRYDLAIDLQGSLRSALLPFLAGAPRRI 105 (279)
T ss_pred --HHHHHHHHHHhh-----cCCCEEEECCCccHHHHHHHHhCCCeEE
Confidence 112234555554 5799999665544444455556665543
No 144
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=95.57 E-value=0.031 Score=46.41 Aligned_cols=98 Identities=11% Similarity=0.137 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCCCCCCC-CCCCCceEEeCCCCCCCcccccccHHHHHHHHHHhcCchHHHHHHHHHhC
Q 012474 29 NPMLQLASILYSKGFSITIIHTNFNSPNP-SNYPHFSFNSISESLWESEVSTENAISLLTVLNDKCVVPFQDCLAKLISN 107 (463)
Q Consensus 29 ~p~l~La~~L~~rGh~Vt~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 107 (463)
.-+..|+++|.++||+|+++++....... ....++.+..++-........ ....+. .+...+ .. ..
T Consensus 5 ~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--------~~~~~l-~~-~~ 71 (160)
T PF13579_consen 5 RYVRELARALAARGHEVTVVTPQPDPEDDEEEEDGVRVHRLPLPRRPWPLR---LLRFLR--------RLRRLL-AA-RR 71 (160)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE---GGG-SEEETTEEEEEE--S-SSSGGG---HCCHHH--------HHHHHC-HH-CT
T ss_pred HHHHHHHHHHHHCCCEEEEEecCCCCcccccccCCceEEeccCCccchhhh---hHHHHH--------HHHHHH-hh-hc
Confidence 34688999999999999999986443221 122567777666221111100 001111 112222 11 21
Q ss_pred CCCCCCceEEEeCCch-hhHHHHHH-HcCCCeEEEeCc
Q 012474 108 GDQEEPVTCLITDAIW-HFAQTVAD-TLRLPRIVLRTS 143 (463)
Q Consensus 108 ~~~~~~pD~VI~D~~~-~~~~~~A~-~~giP~v~~~~~ 143 (463)
.+||+|.+.... .....++. ..++|++.....
T Consensus 72 ----~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h~ 105 (160)
T PF13579_consen 72 ----ERPDVVHAHSPTAGLVAALARRRRGIPLVVTVHG 105 (160)
T ss_dssp -------SEEEEEHHHHHHHHHHHHHHHT--EEEE-SS
T ss_pred ----cCCeEEEecccchhHHHHHHHHccCCcEEEEECC
Confidence 679999988743 22233444 789999986654
No 145
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=95.48 E-value=2.4 Score=40.39 Aligned_cols=86 Identities=17% Similarity=0.233 Sum_probs=53.9
Q ss_pred CCHHHHHHHHHHHhcCCCceEEEEcCCCCCC-Cc-cCC--C-CchhHHHHhcCCCc--eeeccCh---hhhhcCCCCccc
Q 012474 289 VNVTEFLEIAWGLANSRVPFLWVVRPGLVPG-VE-WLE--P-LPKGFLEMLDGRGH--IVKWAPQ---QEVLAHPAVGGF 358 (463)
Q Consensus 289 ~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~-~~-~~~--~-~~~~~~~~~~~~~~--~~~~vpq---~~lL~~~~~~~~ 358 (463)
.+..-+..+++++.+.+.++.+.+..+.... .. .+. . .+.+. ...+++. ++.|+|| +.+|-.|++ -
T Consensus 192 Ye~~~l~~ll~~~~~~~~pv~llvp~g~~~~~~~~~~~~~~~~~g~~--~~~g~l~l~~lPF~~Q~~yD~LLw~cD~--N 267 (374)
T PF10093_consen 192 YENAALASLLDAWAASPKPVHLLVPEGRALNSLAAWLGDALLQAGDS--WQRGNLTLHVLPFVPQDDYDRLLWACDF--N 267 (374)
T ss_pred CCchHHHHHHHHHhcCCCCeEEEecCCccHHHHHHHhccccccCccc--cccCCeEEEECCCCCHHHHHHHHHhCcc--c
Confidence 4555688888898888888777665543111 00 000 0 00000 1113333 4599997 568989998 6
Q ss_pred ccccChhhHHHHHhhCCceec
Q 012474 359 WTHNGWNSTLESICEGVPMIC 379 (463)
Q Consensus 359 I~hgG~~s~~eal~~GvP~l~ 379 (463)
+-. |=-|+.-|..+|+|.|=
T Consensus 268 fVR-GEDSfVRAqwAgkPFvW 287 (374)
T PF10093_consen 268 FVR-GEDSFVRAQWAGKPFVW 287 (374)
T ss_pred eEe-cchHHHHHHHhCCCceE
Confidence 666 66899999999999973
No 146
>PHA01630 putative group 1 glycosyl transferase
Probab=95.07 E-value=0.58 Score=44.50 Aligned_cols=111 Identities=9% Similarity=0.085 Sum_probs=65.7
Q ss_pred ccCh---hhhhcCCCCccccc---ccC-hhhHHHHHhhCCceecccccc--chhh---hHHHHHH-----------Hhhc
Q 012474 343 WAPQ---QEVLAHPAVGGFWT---HNG-WNSTLESICEGVPMICQPCFG--DQLV---NARYVSH-----------VWRV 399 (463)
Q Consensus 343 ~vpq---~~lL~~~~~~~~I~---hgG-~~s~~eal~~GvP~l~~P~~~--DQ~~---na~rv~~-----------~~G~ 399 (463)
++|+ ..+++.+++ ++. ..| -.++.||+++|+|+|+.-..+ |... |+..++. . ++
T Consensus 197 ~v~~~~l~~~y~~aDv--~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~-~~ 273 (331)
T PHA01630 197 PLPDDDIYSLFAGCDI--LFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPI-HV 273 (331)
T ss_pred cCCHHHHHHHHHhCCE--EEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCc-cc
Confidence 3664 446888888 663 333 468999999999999976543 3221 1111110 1 24
Q ss_pred eeecCCccCHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012474 400 GLHLERKFERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILS 462 (463)
Q Consensus 400 G~~l~~~~t~~~l~~~i~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 462 (463)
|..++ .+.+++.+++.+++.|.+.+..++...+-+.... +..+-++.++++.+.+++
T Consensus 274 G~~v~--~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~----~~fs~~~ia~k~~~l~~~ 330 (331)
T PHA01630 274 GYFLD--PDIEDAYQKLLEALANWTPEKKKENLEGRAILYR----ENYSYNAIAKMWEKILEK 330 (331)
T ss_pred ccccC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHhc
Confidence 54433 3678888888888886211233333333333232 566788888888888765
No 147
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=94.82 E-value=2 Score=38.33 Aligned_cols=78 Identities=17% Similarity=0.141 Sum_probs=48.5
Q ss_pred HHHHHHHhcCCCceEEEEcCCCCCCCccCCCCchhHHHHhcCCCce------eeccChhhhhcCCCCccccccc-ChhhH
Q 012474 295 LEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHI------VKWAPQQEVLAHPAVGGFWTHN-GWNST 367 (463)
Q Consensus 295 ~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~vpq~~lL~~~~~~~~I~hg-G~~s~ 367 (463)
..+.+.+++.+..++.+..... .+.+-.-+.+++.....+ .++=|+-+.|+.++. +|.-. ..|-.
T Consensus 187 ~~l~k~l~~~g~~~lisfSRRT------p~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~~La~Ady--ii~TaDSinM~ 258 (329)
T COG3660 187 SLLVKILENQGGSFLISFSRRT------PDTVKSILKNNLNSSPGIVWNNEDTGYNPYIDMLAAADY--IISTADSINMC 258 (329)
T ss_pred HHHHHHHHhCCceEEEEeecCC------cHHHHHHHHhccccCceeEeCCCCCCCCchHHHHhhcce--EEEecchhhhh
Confidence 3466677778888888876542 111111111222222222 255689999998887 66554 45888
Q ss_pred HHHHhhCCceecc
Q 012474 368 LESICEGVPMICQ 380 (463)
Q Consensus 368 ~eal~~GvP~l~~ 380 (463)
.||.+.|+|+-++
T Consensus 259 sEAasTgkPv~~~ 271 (329)
T COG3660 259 SEAASTGKPVFIL 271 (329)
T ss_pred HHHhccCCCeEEE
Confidence 9999999998654
No 148
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=93.77 E-value=0.98 Score=39.16 Aligned_cols=41 Identities=15% Similarity=0.162 Sum_probs=30.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 012474 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPN 56 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 56 (463)
|||++.-=-+. +---+..|+++|.+.||+|+++.+..+...
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~g~~V~VvAP~~~~Sg 41 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSALGHDVVVVAPDSEQSG 41 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTTSSEEEEEEESSSTTT
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhcCCeEEEEeCCCCCcC
Confidence 67777666555 455688999999777899999999866544
No 149
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.45 E-value=0.17 Score=45.88 Aligned_cols=92 Identities=17% Similarity=0.174 Sum_probs=60.1
Q ss_pred eccChhhhhcCCCCcccccccChhhHHHHHhhCCceeccccccchhh--hHHHHHHHhhceeecCCccCHHHHHHHHHHH
Q 012474 342 KWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLV--NARYVSHVWRVGLHLERKFERREIETAIRRV 419 (463)
Q Consensus 342 ~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~~--na~rv~~~~G~G~~l~~~~t~~~l~~~i~~~ 419 (463)
.|-...++|.++++ .|--.| ..+-+++-.|+|+|.+|-.+-|+. -|+|-.+-||+.+.+-. -.+..-..+.+++
T Consensus 301 sqqsfadiLH~ada--algmAG-TAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~-~~aq~a~~~~q~l 376 (412)
T COG4370 301 SQQSFADILHAADA--ALGMAG-TATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVR-PEAQAAAQAVQEL 376 (412)
T ss_pred eHHHHHHHHHHHHH--HHHhcc-chHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecC-CchhhHHHHHHHH
Confidence 44445667777776 554333 123456889999999999999976 57888876688887765 3444444555569
Q ss_pred hccchHHHHHHHHH-HHHHHHH
Q 012474 420 TVEAEGQEMRERIM-HLKEKLE 440 (463)
Q Consensus 420 l~~~~~~~~~~~a~-~~~~~~~ 440 (463)
|.| +.+.++++ .=++++-
T Consensus 377 l~d---p~r~~air~nGqrRiG 395 (412)
T COG4370 377 LGD---PQRLTAIRHNGQRRIG 395 (412)
T ss_pred hcC---hHHHHHHHhcchhhcc
Confidence 999 55555554 3334443
No 150
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=93.34 E-value=0.57 Score=46.66 Aligned_cols=104 Identities=17% Similarity=0.186 Sum_probs=71.0
Q ss_pred eccChh---hhhcCCCCccccc---ccCh-hhHHHHHhhCCc----eeccccccchhhhHHHHHHHhhceeecCCccCHH
Q 012474 342 KWAPQQ---EVLAHPAVGGFWT---HNGW-NSTLESICEGVP----MICQPCFGDQLVNARYVSHVWRVGLHLERKFERR 410 (463)
Q Consensus 342 ~~vpq~---~lL~~~~~~~~I~---hgG~-~s~~eal~~GvP----~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~t~~ 410 (463)
..+++. ++++.+++ ++. +=|+ .++.||+++|+| +|+--+.+- +. . ++-|..++. .+.+
T Consensus 342 ~~~~~~el~aly~aaDv--~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~----~~---~-l~~gllVnP-~d~~ 410 (456)
T TIGR02400 342 RSYDREELMALYRAADV--GLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGA----AQ---E-LNGALLVNP-YDID 410 (456)
T ss_pred CCCCHHHHHHHHHhCcE--EEECccccccCccHHHHHHhcCCCCceEEEeCCCCC----hH---H-hCCcEEECC-CCHH
Confidence 445554 45778888 775 4465 588899999999 655554432 22 2 233566665 7899
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012474 411 EIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILS 462 (463)
Q Consensus 411 ~l~~~i~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 462 (463)
+++++|.++|+.+. +.-+++.+++++.+. ..+...-++++++.+.+
T Consensus 411 ~lA~aI~~aL~~~~-~er~~r~~~~~~~v~-----~~~~~~W~~~~l~~l~~ 456 (456)
T TIGR02400 411 GMADAIARALTMPL-EEREERHRAMMDKLR-----KNDVQRWREDFLSDLNS 456 (456)
T ss_pred HHHHHHHHHHcCCH-HHHHHHHHHHHHHHh-----hCCHHHHHHHHHHHhhC
Confidence 99999999998632 345566666666654 36788888888887754
No 151
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=93.16 E-value=3.2 Score=37.55 Aligned_cols=44 Identities=14% Similarity=0.091 Sum_probs=31.2
Q ss_pred CCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 012474 11 QKKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPN 56 (463)
Q Consensus 11 ~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 56 (463)
+.++|||++.-=-+. |---+..|+++|.+.| +|+++.|..+...
T Consensus 2 ~~~~M~ILltNDDGi-~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg 45 (257)
T PRK13932 2 QDKKPHILVCNDDGI-EGEGIHVLAASMKKIG-RVTVVAPAEPHSG 45 (257)
T ss_pred CCCCCEEEEECCCCC-CCHHHHHHHHHHHhCC-CEEEEcCCCCCCC
Confidence 456799887654443 3345788899998888 7999999765443
No 152
>PLN02939 transferase, transferring glycosyl groups
Probab=93.13 E-value=1.6 Score=46.77 Aligned_cols=113 Identities=12% Similarity=0.105 Sum_probs=68.3
Q ss_pred CCCceeeccChh---hhhcCCCCcccccc---cC-hhhHHHHHhhCCceecccccc--chhhh--HHHH-HHHhhceeec
Q 012474 336 GRGHIVKWAPQQ---EVLAHPAVGGFWTH---NG-WNSTLESICEGVPMICQPCFG--DQLVN--ARYV-SHVWRVGLHL 403 (463)
Q Consensus 336 ~~~~~~~~vpq~---~lL~~~~~~~~I~h---gG-~~s~~eal~~GvP~l~~P~~~--DQ~~n--a~rv-~~~~G~G~~l 403 (463)
+++.+..+.+.. .+++.+++ ||.- =| -.+.+||+++|+|.|+....+ |...+ ...+ +.. +-|...
T Consensus 837 drV~FlG~~de~lah~IYAaADI--FLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg-~NGfLf 913 (977)
T PLN02939 837 NNIRLILKYDEALSHSIYAASDM--FIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVEL-RNGFTF 913 (977)
T ss_pred CeEEEEeccCHHHHHHHHHhCCE--EEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCC-CceEEe
Confidence 567777777753 58888888 8853 12 358999999999998876533 22211 1111 221 456666
Q ss_pred CCccCHHHHHHHHHHHhc----cchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 012474 404 ERKFERREIETAIRRVTV----EAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHIL 461 (463)
Q Consensus 404 ~~~~t~~~l~~~i~~~l~----~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 461 (463)
+. .+++++.++|.+++. | +..+++ |+. +++...-+-...++++.+..+
T Consensus 914 ~~-~D~eaLa~AL~rAL~~~~~d---pe~~~~---L~~---~am~~dFSWe~~A~qYeeLY~ 965 (977)
T PLN02939 914 LT-PDEQGLNSALERAFNYYKRK---PEVWKQ---LVQ---KDMNIDFSWDSSASQYEELYQ 965 (977)
T ss_pred cC-CCHHHHHHHHHHHHHHhccC---HHHHHH---HHH---HHHHhcCCHHHHHHHHHHHHH
Confidence 65 688899999988875 4 222221 211 122245667777777766554
No 153
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=92.99 E-value=0.54 Score=39.78 Aligned_cols=110 Identities=16% Similarity=0.096 Sum_probs=55.7
Q ss_pred cCCCccCHHHHHHHHHHH-HhC-CCeEEEEeCCCCCCCC-----CCC--CCceEEeCCCCCCCcccccccHHHHHHHHHH
Q 012474 21 PLPLQGHINPMLQLASIL-YSK-GFSITIIHTNFNSPNP-----SNY--PHFSFNSISESLWESEVSTENAISLLTVLND 91 (463)
Q Consensus 21 ~~~~~GH~~p~l~La~~L-~~r-Gh~Vt~~~~~~~~~~~-----~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (463)
-.++.||+.=|+.|.+.+ .++ .++..+++........ ++. ....+..++....-......++...+.
T Consensus 4 v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~~~~~~~~~~~r~r~v~q~~~~~~~~~l~---- 79 (170)
T PF08660_consen 4 VLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSSSKRHKILEIPRAREVGQSYLTSIFTTLR---- 79 (170)
T ss_pred EEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhccccceeeccceEEEechhhHhhHHHHHH----
Confidence 345559999999999999 444 4555555553222111 000 001233333211101101111111111
Q ss_pred hcCchHHHHHHHHHhCCCCCCCceEEEeCCch--hhHHHHHHHc------CCCeEEEeCc
Q 012474 92 KCVVPFQDCLAKLISNGDQEEPVTCLITDAIW--HFAQTVADTL------RLPRIVLRTS 143 (463)
Q Consensus 92 ~~~~~l~~~l~~l~~~~~~~~~pD~VI~D~~~--~~~~~~A~~~------giP~v~~~~~ 143 (463)
. +-..+.-+.+ .+||+||+..-. ...+.+|..+ |.+.|.+-+.
T Consensus 80 ---~-~~~~~~il~r-----~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyIES~ 130 (170)
T PF08660_consen 80 ---A-FLQSLRILRR-----ERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYIESF 130 (170)
T ss_pred ---H-HHHHHHHHHH-----hCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEEEee
Confidence 1 1222333344 679999999855 4456788888 8888875443
No 154
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=92.41 E-value=0.88 Score=38.17 Aligned_cols=29 Identities=24% Similarity=0.422 Sum_probs=23.2
Q ss_pred ccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012474 25 QGHINPMLQLASILYSKGFSITIIHTNFN 53 (463)
Q Consensus 25 ~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 53 (463)
.|=-.-+..|+++|+++||+|+++++...
T Consensus 12 GG~e~~~~~l~~~l~~~G~~v~v~~~~~~ 40 (177)
T PF13439_consen 12 GGAERVVLNLARALAKRGHEVTVVSPGVK 40 (177)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEESS-T
T ss_pred ChHHHHHHHHHHHHHHCCCEEEEEEcCCC
Confidence 36667799999999999999999988543
No 155
>PRK14099 glycogen synthase; Provisional
Probab=91.59 E-value=2.1 Score=43.13 Aligned_cols=115 Identities=13% Similarity=0.143 Sum_probs=62.3
Q ss_pred cCCC-ceeeccCh-hhhh-cCCCCccccc---ccCh-hhHHHHHhhCCceecccccc--chhhhHHH---HHHHhhceee
Q 012474 335 DGRG-HIVKWAPQ-QEVL-AHPAVGGFWT---HNGW-NSTLESICEGVPMICQPCFG--DQLVNARY---VSHVWRVGLH 402 (463)
Q Consensus 335 ~~~~-~~~~~vpq-~~lL-~~~~~~~~I~---hgG~-~s~~eal~~GvP~l~~P~~~--DQ~~na~r---v~~~~G~G~~ 402 (463)
++++ .+.+|-.+ ..++ +.+++ |+. +=|. .+..||+++|+|.|+....+ |....... .+.. +.|..
T Consensus 349 ~~~v~~~~G~~~~l~~~~~a~aDi--fv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~-~~G~l 425 (485)
T PRK14099 349 PGQIGVVIGYDEALAHLIQAGADA--LLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGV-ATGVQ 425 (485)
T ss_pred CCCEEEEeCCCHHHHHHHHhcCCE--EEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCC-CceEE
Confidence 3443 34465333 2233 35676 774 3343 47789999997766654321 32211100 0111 46777
Q ss_pred cCCccCHHHHHHHHHH---HhccchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012474 403 LERKFERREIETAIRR---VTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILS 462 (463)
Q Consensus 403 l~~~~t~~~l~~~i~~---~l~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 462 (463)
.+. -+++++.++|.+ +++| +..+ +++++... ...-+-++.+++.++..++
T Consensus 426 ~~~-~d~~~La~ai~~a~~l~~d---~~~~---~~l~~~~~---~~~fSw~~~a~~y~~lY~~ 478 (485)
T PRK14099 426 FSP-VTADALAAALRKTAALFAD---PVAW---RRLQRNGM---TTDVSWRNPAQHYAALYRS 478 (485)
T ss_pred eCC-CCHHHHHHHHHHHHHHhcC---HHHH---HHHHHHhh---hhcCChHHHHHHHHHHHHH
Confidence 775 789999999997 5666 3322 22222211 1456667777777766553
No 156
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=90.20 E-value=1.2 Score=36.76 Aligned_cols=58 Identities=17% Similarity=0.203 Sum_probs=45.8
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCC
Q 012474 12 KKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSNYPHFSFNSISE 70 (463)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~g~~~~~~~~ 70 (463)
+..|||++.-.|+.|-.--++.+++.|.++|++|-=+.++.-...-.. .||+.+.+..
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR-~GF~Ivdl~t 60 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKR-IGFKIVDLAT 60 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeE-eeeEEEEccC
Confidence 458999999999999999999999999999999876555333322222 5888888874
No 157
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=89.75 E-value=0.72 Score=46.68 Aligned_cols=92 Identities=15% Similarity=0.169 Sum_probs=65.1
Q ss_pred CCCceeeccC--h-hhhhcCCCCccccccc---ChhhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCCccCH
Q 012474 336 GRGHIVKWAP--Q-QEVLAHPAVGGFWTHN---GWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFER 409 (463)
Q Consensus 336 ~~~~~~~~vp--q-~~lL~~~~~~~~I~hg---G~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~t~ 409 (463)
.++.+.++.. + ..++.++.+ +|.=+ |.+|..||+.+|+|+| .......|+.. .=|..+ -+.
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl--~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d~-~NG~li---~d~ 475 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRL--IIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEHN-KNGYII---DDI 475 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheE--EEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEcC-CCcEEe---CCH
Confidence 4566778887 5 567777777 88765 6779999999999999 33345555552 555555 468
Q ss_pred HHHHHHHHHHhccch-HHHHHHHHHHHHHHHH
Q 012474 410 REIETAIRRVTVEAE-GQEMRERIMHLKEKLE 440 (463)
Q Consensus 410 ~~l~~~i~~~l~~~~-~~~~~~~a~~~~~~~~ 440 (463)
.+|.++|..+|.+.. +..+...+-+.+....
T Consensus 476 ~~l~~al~~~L~~~~~wn~~~~~sy~~~~~yS 507 (519)
T TIGR03713 476 SELLKALDYYLDNLKNWNYSLAYSIKLIDDYS 507 (519)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999953 4455555555555553
No 158
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=88.65 E-value=4.8 Score=36.59 Aligned_cols=33 Identities=21% Similarity=0.212 Sum_probs=24.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012474 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNF 52 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 52 (463)
|||+++...+. -..|+++|.++||+|+..+...
T Consensus 1 m~ILvlGGT~e-----gr~la~~L~~~g~~v~~s~~t~ 33 (256)
T TIGR00715 1 MTVLLMGGTVD-----SRAIAKGLIAQGIEILVTVTTS 33 (256)
T ss_pred CeEEEEechHH-----HHHHHHHHHhCCCeEEEEEccC
Confidence 56766644332 6789999999999999877644
No 159
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=88.52 E-value=3.9 Score=43.93 Aligned_cols=102 Identities=13% Similarity=0.116 Sum_probs=63.6
Q ss_pred hhhhcCCCCccccc---ccChh-hHHHHHhhCCceeccccccchhhhHHHHHHHhh-ceeecCCccCHHHHHHHHHHHhc
Q 012474 347 QEVLAHPAVGGFWT---HNGWN-STLESICEGVPMICQPCFGDQLVNARYVSHVWR-VGLHLERKFERREIETAIRRVTV 421 (463)
Q Consensus 347 ~~lL~~~~~~~~I~---hgG~~-s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G-~G~~l~~~~t~~~l~~~i~~~l~ 421 (463)
.+++.-+++ |+. .-|+| +..|++++|+|.=.+++..+--..+. . +| -|+.++. .+.++++++|.++|+
T Consensus 370 ~aly~~ADv--fvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G~~~---~-l~~~allVnP-~D~~~lA~AI~~aL~ 442 (797)
T PLN03063 370 CALYAITDV--MLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAGAGQ---S-LGAGALLVNP-WNITEVSSAIKEALN 442 (797)
T ss_pred HHHHHhCCE--EEeCccccccCcchhhHheeecCCCCCEEeeCCcCchh---h-hcCCeEEECC-CCHHHHHHHHHHHHh
Confidence 367778888 774 44876 77799999999222222222222222 1 24 4677775 899999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 012474 422 EAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHIL 461 (463)
Q Consensus 422 ~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 461 (463)
.+. +.-+++.+++.+.+. ......-++.+++.++
T Consensus 443 m~~-~er~~r~~~~~~~v~-----~~~~~~Wa~~fl~~l~ 476 (797)
T PLN03063 443 MSD-EERETRHRHNFQYVK-----THSAQKWADDFMSELN 476 (797)
T ss_pred CCH-HHHHHHHHHHHHhhh-----hCCHHHHHHHHHHHHH
Confidence 321 233445555555554 3456666777766654
No 160
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.98 E-value=16 Score=33.32 Aligned_cols=118 Identities=14% Similarity=0.050 Sum_probs=61.0
Q ss_pred ceeeccCh---hhhhcCCCCcccccccChhhHHHHHhhCCceeccccccchhhhH--HHHHHHh-hceeecCCccCHHHH
Q 012474 339 HIVKWAPQ---QEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNA--RYVSHVW-RVGLHLERKFERREI 412 (463)
Q Consensus 339 ~~~~~vpq---~~lL~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~~na--~rv~~~~-G~G~~l~~~~t~~~l 412 (463)
..+.|+|| +.+|--|++ -+-. |--|+.-|..+|+|.+= ++.-|..|+ ..++.-| ....-++. -+.+.+
T Consensus 241 vklPFvpqddyd~LL~lcD~--n~VR-GEDSFVRAq~agkPflW--HIYpQdentHl~KLeaFldky~~~lp~-~~a~al 314 (370)
T COG4394 241 VKLPFVPQDDYDELLWLCDF--NLVR-GEDSFVRAQLAGKPFLW--HIYPQDENTHLAKLEAFLDKYCPFLPP-NTAKAL 314 (370)
T ss_pred EEecCCcHhHHHHHHHhccc--ceee-cchHHHHHHHcCCCcEE--EecCCccccHHHHHHHHHHHhCCCCCH-HHHHHH
Confidence 44599997 558888888 4445 67899999999999862 122344443 2333200 01111111 122223
Q ss_pred HHHHHHHhccc---hHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012474 413 ETAIRRVTVEA---EGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILS 462 (463)
Q Consensus 413 ~~~i~~~l~~~---~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 462 (463)
+.-....=.+. +++.+.++.+.+++..++=.+..+..-+.+++++.+++.
T Consensus 315 rt~~~~~N~~~ls~~w~~f~~~~~~~r~~a~~wa~~l~~~~dlaekLvaF~ek 367 (370)
T COG4394 315 RTFWIAWNAGRLSDDWSYFFKNLKEWREHAKKWANHLIKNPDLAEKLVAFIEK 367 (370)
T ss_pred HHHHHHhcCCcccccHHHHHHhhHHHHHHHHHHHHHHccCccHHHHHHHHHHH
Confidence 22221111111 233344444444444433333445677788888888875
No 161
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=87.75 E-value=1.2 Score=36.06 Aligned_cols=40 Identities=20% Similarity=0.153 Sum_probs=37.6
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012474 12 KKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (463)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (463)
+++.+|++.+.++-+|-.-..-++..|.++|++|+++...
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~ 40 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVM 40 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCC
Confidence 5789999999999999999999999999999999999885
No 162
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=87.23 E-value=1.8 Score=43.25 Aligned_cols=102 Identities=19% Similarity=0.233 Sum_probs=62.8
Q ss_pred eccChh---hhhcCCCCccccc---ccCh-hhHHHHHhhCCc----eeccccccchhhhHHHHHHHhhceeecCCccCHH
Q 012474 342 KWAPQQ---EVLAHPAVGGFWT---HNGW-NSTLESICEGVP----MICQPCFGDQLVNARYVSHVWRVGLHLERKFERR 410 (463)
Q Consensus 342 ~~vpq~---~lL~~~~~~~~I~---hgG~-~s~~eal~~GvP----~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~t~~ 410 (463)
+++++. .++..+++ +|. +-|+ .++.||+++|+| +|+--..+- +. .. .-|..++. -+.+
T Consensus 347 g~v~~~el~~~y~~aDv--~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~----~~---~~-~~g~lv~p-~d~~ 415 (460)
T cd03788 347 RSLPREELAALYRAADV--ALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGA----AE---EL-SGALLVNP-YDID 415 (460)
T ss_pred CCCCHHHHHHHHHhccE--EEeCccccccCcccceeEEEecCCCceEEEeccccc----hh---hc-CCCEEECC-CCHH
Confidence 566764 45888888 773 4565 477999999999 444322221 11 11 23555554 7899
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH
Q 012474 411 EIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHI 460 (463)
Q Consensus 411 ~l~~~i~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 460 (463)
+++++|.++++++. +..+++.++.++.+ ...+...-++++++.+
T Consensus 416 ~la~ai~~~l~~~~-~e~~~~~~~~~~~v-----~~~~~~~w~~~~l~~l 459 (460)
T cd03788 416 EVADAIHRALTMPL-EERRERHRKLREYV-----RTHDVQAWANSFLDDL 459 (460)
T ss_pred HHHHHHHHHHcCCH-HHHHHHHHHHHHHH-----HhCCHHHHHHHHHHhh
Confidence 99999999998632 12233333333333 2467788888887765
No 163
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=86.47 E-value=1.2 Score=35.11 Aligned_cols=37 Identities=8% Similarity=0.145 Sum_probs=26.9
Q ss_pred cEEEEEcCCCcc---CHHHHHHHHHHHHhCCCeEEEEeCC
Q 012474 15 RRVILFPLPLQG---HINPMLQLASILYSKGFSITIIHTN 51 (463)
Q Consensus 15 ~~il~~~~~~~G---H~~p~l~La~~L~~rGh~Vt~~~~~ 51 (463)
|||+|+.-|-.+ .-.-...++.+-.+|||+|.++...
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~ 40 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRRGHEVFYYEPG 40 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GG
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcC
Confidence 789999888644 3456899999999999999999885
No 164
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=86.25 E-value=21 Score=32.50 Aligned_cols=40 Identities=8% Similarity=0.088 Sum_probs=27.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 012474 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPN 56 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 56 (463)
|||++.-=-+. |---+..|+++|...| +|+++.|..+...
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~al~~~g-~V~VvAP~~eqSg 40 (266)
T PRK13934 1 MKILVTNDDGV-HSPGLRLLYEFVSPLG-EVDVVAPETPKSA 40 (266)
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhCC-cEEEEccCCCCcc
Confidence 55555444333 4455788999998888 7999998765433
No 165
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=85.87 E-value=0.92 Score=38.26 Aligned_cols=34 Identities=12% Similarity=0.123 Sum_probs=26.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012474 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNF 52 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 52 (463)
|||.++.-.+. + --.|+++...|||+||-++-..
T Consensus 1 mKIaiIgAsG~--~--Gs~i~~EA~~RGHeVTAivRn~ 34 (211)
T COG2910 1 MKIAIIGASGK--A--GSRILKEALKRGHEVTAIVRNA 34 (211)
T ss_pred CeEEEEecCch--h--HHHHHHHHHhCCCeeEEEEeCh
Confidence 78888765543 2 2468999999999999999854
No 166
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=85.78 E-value=26 Score=31.71 Aligned_cols=40 Identities=13% Similarity=0.074 Sum_probs=25.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 012474 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPN 56 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 56 (463)
|||++.-=-+. |---+..|+++|.+ +|+|+++.|..+...
T Consensus 1 M~ILvtNDDGi-~apGl~aL~~~l~~-~~~V~VvAP~~~~Sg 40 (253)
T PRK13933 1 MNILLTNDDGI-NAEGINTLAELLSK-YHEVIIVAPENQRSA 40 (253)
T ss_pred CeEEEEcCCCC-CChhHHHHHHHHHh-CCcEEEEccCCCCcc
Confidence 56665543333 22337788888865 689999999765443
No 167
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=84.93 E-value=6.7 Score=35.20 Aligned_cols=41 Identities=20% Similarity=0.204 Sum_probs=27.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCC
Q 012474 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNP 57 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~ 57 (463)
|||++.-=-+ =|---+..|++.|. .+++|+++.++.+....
T Consensus 1 mrILlTNDDG-i~a~Gi~aL~~al~-~~~dV~VVAP~~~qSg~ 41 (252)
T COG0496 1 MRILLTNDDG-IHAPGIRALARALR-EGADVTVVAPDREQSGA 41 (252)
T ss_pred CeEEEecCCc-cCCHHHHHHHHHHh-hCCCEEEEccCCCCccc
Confidence 4555543322 24445778888888 99999999998765444
No 168
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=83.98 E-value=33 Score=31.08 Aligned_cols=40 Identities=8% Similarity=0.038 Sum_probs=26.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 012474 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPN 56 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 56 (463)
|||++.-=-+. |---+..|+++|.+ +|+|+++.|..+...
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~-~~~V~VvAP~~~qSg 40 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYLSE-KHEVFVVAPDKERSA 40 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHHHh-CCcEEEEccCCCCcc
Confidence 56665544443 33447788888864 689999999765433
No 169
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=82.62 E-value=9 Score=35.65 Aligned_cols=79 Identities=23% Similarity=0.326 Sum_probs=52.3
Q ss_pred CCCceeeccC---hhhhhcCCCCcccccc---cChh-hHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCCccC
Q 012474 336 GRGHIVKWAP---QQEVLAHPAVGGFWTH---NGWN-STLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFE 408 (463)
Q Consensus 336 ~~~~~~~~vp---q~~lL~~~~~~~~I~h---gG~~-s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~t 408 (463)
+++.+..+++ ...++..+++ ++.- .|.| ++.||+++|+|++... .......+.. .+.|. +....+
T Consensus 257 ~~v~~~g~~~~~~~~~~~~~~~~--~v~ps~~e~~~~~~~Ea~a~g~pvi~~~----~~~~~e~~~~-~~~g~-~~~~~~ 328 (381)
T COG0438 257 DNVKFLGYVPDEELAELLASADV--FVLPSLSEGFGLVLLEAMAAGTPVIASD----VGGIPEVVED-GETGL-LVPPGD 328 (381)
T ss_pred CcEEEecccCHHHHHHHHHhCCE--EEeccccccchHHHHHHHhcCCcEEECC----CCChHHHhcC-CCceE-ecCCCC
Confidence 5566778888 2446777777 6665 3554 4699999999996544 3333334443 13466 333237
Q ss_pred HHHHHHHHHHHhcc
Q 012474 409 RREIETAIRRVTVE 422 (463)
Q Consensus 409 ~~~l~~~i~~~l~~ 422 (463)
.+.+.+++..++++
T Consensus 329 ~~~~~~~i~~~~~~ 342 (381)
T COG0438 329 VEELADALEQLLED 342 (381)
T ss_pred HHHHHHHHHHHhcC
Confidence 89999999999998
No 170
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=82.59 E-value=37 Score=30.70 Aligned_cols=40 Identities=18% Similarity=0.148 Sum_probs=26.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 012474 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPN 56 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 56 (463)
|||++.-=-+. |---+..|+++|.+. |+|+++.+..+...
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~~-~~V~VvAP~~~qSg 40 (250)
T PRK00346 1 MRILLTNDDGI-HAPGIRALAEALREL-ADVTVVAPDRERSG 40 (250)
T ss_pred CeEEEECCCCC-CChhHHHHHHHHHhC-CCEEEEeCCCCCcC
Confidence 55555443332 334478899999988 79999999765433
No 171
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=82.26 E-value=6.2 Score=36.25 Aligned_cols=40 Identities=25% Similarity=0.215 Sum_probs=33.8
Q ss_pred eeeccChhhhhcCCCCcccccccChhhHHHHHhhCCceecccc
Q 012474 340 IVKWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPC 382 (463)
Q Consensus 340 ~~~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~ 382 (463)
+.+-++-.+++.+++. +||-.+ .+-.||+.+|+|++++..
T Consensus 187 ~~~~~~~~~Ll~~s~~--VvtinS-tvGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 187 IDDDVNLYELLEQSDA--VVTINS-TVGLEALLHGKPVIVFGR 226 (269)
T ss_pred ECCCCCHHHHHHhCCE--EEEECC-HHHHHHHHcCCceEEecC
Confidence 3466777899999999 999865 588999999999999874
No 172
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=81.33 E-value=3.4 Score=37.26 Aligned_cols=94 Identities=9% Similarity=0.056 Sum_probs=54.3
Q ss_pred CCeEEEEecCCccc---CCHHHHHHHHHHHhcCCCceEEEEcCCCCCCCccCCCCchhHHHHhcCC----Cc-eee--cc
Q 012474 275 AKSVMYVSFGSIVV---VNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGR----GH-IVK--WA 344 (463)
Q Consensus 275 ~~~~v~vs~Gs~~~---~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~--~v 344 (463)
+++.|.+..|+... .+.+.+..+++.+.+.++++++..+... ..+...+...+. +. +.. -+
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l 174 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEE---------QEKEIADQIAAGLQNPVINLAGKTSL 174 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHH---------HHHHHHHHHHTTHTTTTEEETTTS-H
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchH---------HHHHHHHHHHHhcccceEeecCCCCH
Confidence 56778888887654 7888999999999988766554433211 011122222211 11 212 23
Q ss_pred Ch-hhhhcCCCCcccccccChhhHHHHHhhCCceecc
Q 012474 345 PQ-QEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQ 380 (463)
Q Consensus 345 pq-~~lL~~~~~~~~I~hgG~~s~~eal~~GvP~l~~ 380 (463)
.+ ..++.++++ +|+. -.|.+.=|.+.|+|+|++
T Consensus 175 ~e~~ali~~a~~--~I~~-Dtg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 175 RELAALISRADL--VIGN-DTGPMHLAAALGTPTVAL 208 (247)
T ss_dssp HHHHHHHHTSSE--EEEE-SSHHHHHHHHTT--EEEE
T ss_pred HHHHHHHhcCCE--EEec-CChHHHHHHHHhCCEEEE
Confidence 33 678889999 9987 558999999999999988
No 173
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=81.19 E-value=30 Score=29.79 Aligned_cols=101 Identities=8% Similarity=0.025 Sum_probs=62.2
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCC------CCCCCCCCceEEeCCCCCCCcccccccHHHH
Q 012474 12 KKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNS------PNPSNYPHFSFNSISESLWESEVSTENAISL 85 (463)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 85 (463)
+.+-.|.+++..+.|-....+.+|-+.+.+|++|.++-.=... ......+++.+..++.+..... .+..+-
T Consensus 20 ~~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~---~~~~e~ 96 (191)
T PRK05986 20 EEKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWET---QDRERD 96 (191)
T ss_pred ccCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccC---CCcHHH
Confidence 4567899999999999999999999999999999998642211 1112235788887775432211 111111
Q ss_pred HHHHHHhcCchHHHHHHHHHhCCCCCCCceEEEeCCchh
Q 012474 86 LTVLNDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWH 124 (463)
Q Consensus 86 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~pD~VI~D~~~~ 124 (463)
. ..+...+....+.+.+ ..+|+||.|-...
T Consensus 97 ~----~~~~~~~~~a~~~l~~-----~~ydlvVLDEi~~ 126 (191)
T PRK05986 97 I----AAAREGWEEAKRMLAD-----ESYDLVVLDELTY 126 (191)
T ss_pred H----HHHHHHHHHHHHHHhC-----CCCCEEEEehhhH
Confidence 1 1121222223333332 5799999998653
No 174
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=80.94 E-value=25 Score=31.70 Aligned_cols=40 Identities=15% Similarity=0.110 Sum_probs=26.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 012474 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPN 56 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 56 (463)
|||++.-=-+ =|---+..|+++|.+.| +|+++.+..+...
T Consensus 1 M~ILltNDDG-i~a~Gi~aL~~~l~~~g-~V~VvAP~~~~Sg 40 (244)
T TIGR00087 1 MKILLTNDDG-IHSPGIRALYQALKELG-EVTVVAPARQRSG 40 (244)
T ss_pred CeEEEECCCC-CCCHhHHHHHHHHHhCC-CEEEEeCCCCccc
Confidence 5555443322 13334778999999888 8999999765543
No 175
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=80.02 E-value=2.8 Score=32.97 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=32.7
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012474 16 RVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (463)
Q Consensus 16 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (463)
||++.+.++-.|.....-++..|..+|++|.++...
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~G~~V~~lg~~ 36 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDAGFEVIDLGVD 36 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHCCCEEEECCCC
Confidence 588999999999999999999999999999887753
No 176
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=80.02 E-value=1.2 Score=43.06 Aligned_cols=110 Identities=16% Similarity=0.141 Sum_probs=65.4
Q ss_pred CCCcee-eccChhhhhcCCCCcccccccChhhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecC----C--ccC
Q 012474 336 GRGHIV-KWAPQQEVLAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLE----R--KFE 408 (463)
Q Consensus 336 ~~~~~~-~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~----~--~~t 408 (463)
+++..+ +..+-.++|..+++ +||-- ...+.|.+..++|++....-.|..... . |.-.... . --+
T Consensus 252 ~~i~~~~~~~~~~~ll~~aDi--LITDy-SSi~fD~~~l~KPiify~~D~~~Y~~~-----r-g~~~~~~~~~pg~~~~~ 322 (369)
T PF04464_consen 252 SNIIFVSDNEDIYDLLAAADI--LITDY-SSIIFDFLLLNKPIIFYQPDLEEYEKE-----R-GFYFDYEEDLPGPIVYN 322 (369)
T ss_dssp TTEEE-TT-S-HHHHHHT-SE--EEESS--THHHHHGGGT--EEEE-TTTTTTTTT-----S-SBSS-TTTSSSS-EESS
T ss_pred CcEEECCCCCCHHHHHHhcCE--EEEec-hhHHHHHHHhCCCEEEEeccHHHHhhc-----c-CCCCchHhhCCCceeCC
Confidence 344444 44456889999999 99996 468999999999999887666555322 1 3333321 1 357
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 012474 409 RREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHIL 461 (463)
Q Consensus 409 ~~~l~~~i~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 461 (463)
.++|.++|..++.+. ..++++-++..+++.. .-..++++++++.|.
T Consensus 323 ~~eL~~~i~~~~~~~--~~~~~~~~~~~~~~~~-----~~Dg~s~eri~~~I~ 368 (369)
T PF04464_consen 323 FEELIEAIENIIENP--DEYKEKREKFRDKFFK-----YNDGNSSERIVNYIF 368 (369)
T ss_dssp HHHHHHHHTTHHHHH--HHTHHHHHHHHHHHST-----T--S-HHHHHHHHHH
T ss_pred HHHHHHHHHhhhhCC--HHHHHHHHHHHHHhCC-----CCCchHHHHHHHHHh
Confidence 899999999998773 3455666666666642 223455666666554
No 177
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=79.87 E-value=3.1 Score=33.36 Aligned_cols=36 Identities=14% Similarity=0.194 Sum_probs=29.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012474 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (463)
|||++...|+.+=.. ...+.++|.++|++|.++.++
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~g~~v~vv~S~ 36 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRAGWEVRVVLSP 36 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTTTSEEEEEESH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhCCCEEEEEECC
Confidence 688888888865555 999999999999999999886
No 178
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=78.40 E-value=7.4 Score=38.51 Aligned_cols=92 Identities=10% Similarity=0.106 Sum_probs=61.7
Q ss_pred CCCcee-eccC-h-hhhhcCCCCcccccccC--hhhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCCccCHH
Q 012474 336 GRGHIV-KWAP-Q-QEVLAHPAVGGFWTHNG--WNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERR 410 (463)
Q Consensus 336 ~~~~~~-~~vp-q-~~lL~~~~~~~~I~hgG--~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~t~~ 410 (463)
+|+.+. .+.+ + .+++..|++=+-|+||+ ..++.||+.+|+|++..=..... ...+.. |-..+ .-+.+
T Consensus 328 ~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~---~~~i~~----g~l~~-~~~~~ 399 (438)
T TIGR02919 328 DNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHN---RDFIAS----ENIFE-HNEVD 399 (438)
T ss_pred CCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCC---cccccC----Cceec-CCCHH
Confidence 555555 7777 4 78999999988889976 47999999999999876533211 111111 32333 36789
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHH
Q 012474 411 EIETAIRRVTVEAEGQEMRERIMHLKE 437 (463)
Q Consensus 411 ~l~~~i~~~l~~~~~~~~~~~a~~~~~ 437 (463)
++.++|.++|.++ +.++++..+-++
T Consensus 400 ~m~~~i~~lL~d~--~~~~~~~~~q~~ 424 (438)
T TIGR02919 400 QLISKLKDLLNDP--NQFRELLEQQRE 424 (438)
T ss_pred HHHHHHHHHhcCH--HHHHHHHHHHHH
Confidence 9999999999982 234444444333
No 179
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=78.32 E-value=28 Score=32.23 Aligned_cols=46 Identities=13% Similarity=0.200 Sum_probs=39.6
Q ss_pred ccCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 012474 9 VQQKKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNS 54 (463)
Q Consensus 9 ~~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 54 (463)
..+.++-+|.+.-.|+-|-=.-.-.|.++|.++||+|-++.-++..
T Consensus 46 p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSS 91 (323)
T COG1703 46 PRTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSS 91 (323)
T ss_pred hcCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCC
Confidence 3456678999999999999999999999999999999999876543
No 180
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=77.88 E-value=18 Score=33.62 Aligned_cols=136 Identities=13% Similarity=0.122 Sum_probs=77.3
Q ss_pred EEEEecCCcccCCHHHHHHHHHHHhc-CCC--ceEEEEcCCCCCCCccCCCCchhHHHHhc-CCCcee-eccC---hhhh
Q 012474 278 VMYVSFGSIVVVNVTEFLEIAWGLAN-SRV--PFLWVVRPGLVPGVEWLEPLPKGFLEMLD-GRGHIV-KWAP---QQEV 349 (463)
Q Consensus 278 ~v~vs~Gs~~~~~~~~~~~~~~al~~-~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~vp---q~~l 349 (463)
.+-|-.|..+. +.....++++++.+ .+. ++++-.+-+.. +.+..+++-..-.+-.+ +++.+. +++| +.++
T Consensus 146 ~~tIlvGNSgd-~SN~Hie~L~~l~~~~~~~v~ii~PlsYp~g-n~~Yi~~V~~~~~~lF~~~~~~~L~e~l~f~eYl~l 223 (322)
T PRK02797 146 KMTILVGNSGD-RSNRHIEALRALHQQFGDNVKIIVPMGYPAN-NQAYIEEVRQAGLALFGAENFQILTEKLPFDDYLAL 223 (322)
T ss_pred ceEEEEeCCCC-CcccHHHHHHHHHHHhCCCeEEEEECCcCCC-CHHHHHHHHHHHHHhcCcccEEehhhhCCHHHHHHH
Confidence 34555566554 33344444455532 344 55555443211 11111112122222233 566654 7777 4779
Q ss_pred hcCCCCcccccc--cChhhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCC-ccCHHHHHHHHHHHh
Q 012474 350 LAHPAVGGFWTH--NGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLER-KFERREIETAIRRVT 420 (463)
Q Consensus 350 L~~~~~~~~I~h--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~-~~t~~~l~~~i~~~l 420 (463)
|+.|+++.|+|+ =|.||++-.+..|||+++-- +-+.+.. +.+ .|+-+-.+. .++...+.++=+++.
T Consensus 224 L~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r---~n~fwqd-l~e-~gv~Vlf~~d~L~~~~v~e~~rql~ 292 (322)
T PRK02797 224 LRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSR---DNPFWQD-LTE-QGLPVLFTGDDLDEDIVREAQRQLA 292 (322)
T ss_pred HHhCCEEEEeechhhHHhHHHHHHHCCCcEEEec---CCchHHH-HHh-CCCeEEecCCcccHHHHHHHHHHHH
Confidence 999999888875 48999999999999998753 3333333 333 377775555 788887777644443
No 181
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=76.87 E-value=4.8 Score=29.01 Aligned_cols=37 Identities=16% Similarity=0.286 Sum_probs=32.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012474 14 GRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHT 50 (463)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (463)
..-++++..+...|...+..+|+.|.++|+.|...-.
T Consensus 15 ~k~~v~i~HG~~eh~~ry~~~a~~L~~~G~~V~~~D~ 51 (79)
T PF12146_consen 15 PKAVVVIVHGFGEHSGRYAHLAEFLAEQGYAVFAYDH 51 (79)
T ss_pred CCEEEEEeCCcHHHHHHHHHHHHHHHhCCCEEEEECC
Confidence 4668888888889999999999999999999875544
No 182
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=76.26 E-value=40 Score=32.42 Aligned_cols=101 Identities=27% Similarity=0.254 Sum_probs=58.8
Q ss_pred HHHHHHHhcCCCceEEEEcCCCCCCCccCCCCchhHHHHhcCCCceeeccChhhhhcCCCCcccccccChhhHHHHHhhC
Q 012474 295 LEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIVKWAPQQEVLAHPAVGGFWTHNGWNSTLESICEG 374 (463)
Q Consensus 295 ~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~I~hgG~~s~~eal~~G 374 (463)
.+|++.+.....-+++.++++. +-.++..- +...-| |-.+-++-|+ |..++..|+.+|
T Consensus 206 ~EIl~ql~~~~~AI~vpVGGGG---------LiaGIat~------vk~~~p------~vkIIGVEt~-~a~~f~~sl~~g 263 (457)
T KOG1250|consen 206 LEILEQLKEPDGAIVVPVGGGG---------LIAGIATG------VKRVGP------HVKIIGVETE-GAHSFNASLKAG 263 (457)
T ss_pred HHHHHhhcCCCCeEEEecCCch---------hHHHHHHH------HHHhCC------CCceEEEeec-CcHHHHHHHhcC
Confidence 4566666655445666676654 44444211 111112 4455556777 778999999999
Q ss_pred Cceecccc---ccch------hhhHHHHHHHhhceeecCC--ccCHHHHHHHHHHHhccc
Q 012474 375 VPMICQPC---FGDQ------LVNARYVSHVWRVGLHLER--KFERREIETAIRRVTVEA 423 (463)
Q Consensus 375 vP~l~~P~---~~DQ------~~na~rv~~~~G~G~~l~~--~~t~~~l~~~i~~~l~~~ 423 (463)
.|+- +|. ++|- -.|+-++.+. ..+. ..+.+++..+|.++++|+
T Consensus 264 ~~V~-lp~i~s~AdglaV~~Vg~~tf~~a~~-----~~d~vvvV~~~ei~aaI~~l~ede 317 (457)
T KOG1250|consen 264 KPVT-LPKITSLADGLAVKTVGENTFELAQK-----LVDRVVVVEDDEIAAAILRLFEDE 317 (457)
T ss_pred Ceee-cccccchhcccccchhhHHHHHHHHh-----cCceEEEeccHHHHHHHHHHHHhh
Confidence 9873 332 2332 2233344332 1122 578899999999999883
No 183
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=74.91 E-value=57 Score=31.04 Aligned_cols=45 Identities=20% Similarity=0.359 Sum_probs=32.8
Q ss_pred hcCCCceeeccCh---hhhhcCCCCcccccccC----hhhHHHHHhhCCceecc
Q 012474 334 LDGRGHIVKWAPQ---QEVLAHPAVGGFWTHNG----WNSTLESICEGVPMICQ 380 (463)
Q Consensus 334 ~~~~~~~~~~vpq---~~lL~~~~~~~~I~hgG----~~s~~eal~~GvP~l~~ 380 (463)
+.+++.+.+-+|+ .++|.+-++ |++-.= .-++.||..+|.|++..
T Consensus 250 l~~rV~~lG~v~h~~Vr~vl~~G~I--FlntSlTEafc~~ivEAaScGL~VVsT 301 (426)
T KOG1111|consen 250 LQDRVVMLGTVPHDRVRDVLVRGDI--FLNTSLTEAFCMVIVEAASCGLPVVST 301 (426)
T ss_pred ccCceEEecccchHHHHHHHhcCcE--EeccHHHHHHHHHHHHHHhCCCEEEEe
Confidence 5588888999996 456777777 775432 13678999999999864
No 184
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=74.27 E-value=81 Score=29.91 Aligned_cols=129 Identities=16% Similarity=0.015 Sum_probs=76.4
Q ss_pred hccCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCC--CCCCCCCCCceEEeCCCCCCCcccccccHHHH
Q 012474 8 NVQQKKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFN--SPNPSNYPHFSFNSISESLWESEVSTENAISL 85 (463)
Q Consensus 8 ~~~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 85 (463)
.....++.|++++..|-.||--+|.-=|..|++.|..|.++..-.. .+..-+.++++++.++.-- .......-..-.
T Consensus 6 ~~~~~~k~ra~vvVLGDvGRSPRMqYHA~Sla~~gf~VdliGy~~s~p~e~l~~hprI~ih~m~~l~-~~~~~p~~~~l~ 84 (444)
T KOG2941|consen 6 YENKSKKKRAIVVVLGDVGRSPRMQYHALSLAKLGFQVDLIGYVESIPLEELLNHPRIRIHGMPNLP-FLQGGPRVLFLP 84 (444)
T ss_pred cccccccceEEEEEecccCCChHHHHHHHHHHHcCCeEEEEEecCCCChHHHhcCCceEEEeCCCCc-ccCCCchhhhhH
Confidence 3445678899999999999999999999999999999999986322 2223346889999888421 111111111122
Q ss_pred HHHHHHhcCchHHHHHHHHHhCCCCCCCceEEEeCC-chhhHHHHHHH----cCCCeEEEeCchhH
Q 012474 86 LTVLNDKCVVPFQDCLAKLISNGDQEEPVTCLITDA-IWHFAQTVADT----LRLPRIVLRTSSIS 146 (463)
Q Consensus 86 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~pD~VI~D~-~~~~~~~~A~~----~giP~v~~~~~~~~ 146 (463)
++.++... .++-++... .++|.+++-. -+...+.++.. .|...++=+....+
T Consensus 85 lKvf~Qfl-----~Ll~aL~~~----~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Y 141 (444)
T KOG2941|consen 85 LKVFWQFL-----SLLWALFVL----RPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGY 141 (444)
T ss_pred HHHHHHHH-----HHHHHHHhc----cCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHH
Confidence 33332222 222222222 5688888654 33334444433 46666765554443
No 185
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=72.96 E-value=3 Score=35.76 Aligned_cols=39 Identities=26% Similarity=0.348 Sum_probs=25.8
Q ss_pred CcEEEEEcCCCccCHH------------HHHHHHHHHHhCCCeEEEEeCCC
Q 012474 14 GRRVILFPLPLQGHIN------------PMLQLASILYSKGFSITIIHTNF 52 (463)
Q Consensus 14 ~~~il~~~~~~~GH~~------------p~l~La~~L~~rGh~Vt~~~~~~ 52 (463)
+.||++...|+.=++. .-..||+++..+|++||+++.+.
T Consensus 3 gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~ 53 (185)
T PF04127_consen 3 GKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPS 53 (185)
T ss_dssp T-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred CCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCc
Confidence 4556665555544443 35789999999999999999963
No 186
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=72.77 E-value=18 Score=32.81 Aligned_cols=29 Identities=17% Similarity=0.351 Sum_probs=22.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 012474 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIH 49 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 49 (463)
|||+++...+-| ..|++.|.++|+ |++-+
T Consensus 1 m~ILvlgGTtE~-----r~la~~L~~~g~-v~~sv 29 (249)
T PF02571_consen 1 MKILVLGGTTEG-----RKLAERLAEAGY-VIVSV 29 (249)
T ss_pred CEEEEEechHHH-----HHHHHHHHhcCC-EEEEE
Confidence 788888776655 478999999998 55533
No 187
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=72.45 E-value=5.6 Score=34.36 Aligned_cols=40 Identities=18% Similarity=0.135 Sum_probs=30.8
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012474 13 KGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNF 52 (463)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 52 (463)
+++||++--.|+.|=+.-...++++|.++||+|+++.++.
T Consensus 4 ~~k~IllgVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~a 43 (196)
T PRK08305 4 KGKRIGFGLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSYT 43 (196)
T ss_pred CCCEEEEEEcCHHHHHHHHHHHHHHHHhCcCEEEEEECHh
Confidence 4667777766664444437999999999999999999854
No 188
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=72.36 E-value=10 Score=38.54 Aligned_cols=75 Identities=11% Similarity=0.109 Sum_probs=46.9
Q ss_pred hhhhhcCCCCccccc---ccCh-hhHHHHHhhCCceecccccc-chhhhHHHHHHHhhceeecCC------ccCHHHHHH
Q 012474 346 QQEVLAHPAVGGFWT---HNGW-NSTLESICEGVPMICQPCFG-DQLVNARYVSHVWRVGLHLER------KFERREIET 414 (463)
Q Consensus 346 q~~lL~~~~~~~~I~---hgG~-~s~~eal~~GvP~l~~P~~~-DQ~~na~rv~~~~G~G~~l~~------~~t~~~l~~ 414 (463)
..+++..|++ +|. +=|+ -++.||+++|+|+|.....+ ..... ..+...-..|+.+.. ..+.++|.+
T Consensus 468 y~E~~~g~dl--~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~-E~v~~~~~~gi~V~~r~~~~~~e~v~~La~ 544 (590)
T cd03793 468 YEEFVRGCHL--GVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFME-EHIEDPESYGIYIVDRRFKSPDESVQQLTQ 544 (590)
T ss_pred hHHHhhhceE--EEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhH-HHhccCCCceEEEecCCccchHHHHHHHHH
Confidence 5667777888 665 3454 59999999999999987643 22211 112110014555531 356788888
Q ss_pred HHHHHhccc
Q 012474 415 AIRRVTVEA 423 (463)
Q Consensus 415 ~i~~~l~~~ 423 (463)
+|.++++.+
T Consensus 545 ~m~~~~~~~ 553 (590)
T cd03793 545 YMYEFCQLS 553 (590)
T ss_pred HHHHHhCCc
Confidence 888888653
No 189
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=72.35 E-value=31 Score=32.63 Aligned_cols=81 Identities=11% Similarity=0.095 Sum_probs=59.6
Q ss_pred CCCce-eeccC---hhhhhcCCCCcccccc--cChhhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCC-ccC
Q 012474 336 GRGHI-VKWAP---QQEVLAHPAVGGFWTH--NGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLER-KFE 408 (463)
Q Consensus 336 ~~~~~-~~~vp---q~~lL~~~~~~~~I~h--gG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~-~~t 408 (463)
+++.+ .+++| +.++|..|+++.|.+. =|+|+++-.|..|+|+++- .+.---+-+.+ .|+-+-... .++
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~----~~np~~~~l~~-~~ipVlf~~d~L~ 319 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS----RDNPFWQDLKE-QGIPVLFYGDELD 319 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe----cCChHHHHHHh-CCCeEEeccccCC
Confidence 46655 47888 4679999999766664 5899999999999999763 23333445555 387776654 899
Q ss_pred HHHHHHHHHHHhc
Q 012474 409 RREIETAIRRVTV 421 (463)
Q Consensus 409 ~~~l~~~i~~~l~ 421 (463)
.+.++++=+++..
T Consensus 320 ~~~v~ea~rql~~ 332 (360)
T PF07429_consen 320 EALVREAQRQLAN 332 (360)
T ss_pred HHHHHHHHHHHhh
Confidence 9999998887765
No 190
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=71.55 E-value=48 Score=27.65 Aligned_cols=97 Identities=12% Similarity=0.165 Sum_probs=56.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCC---C---CCCCCCCCceEEeCCCCCCCcccccccHHHHHHHH
Q 012474 16 RVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFN---S---PNPSNYPHFSFNSISESLWESEVSTENAISLLTVL 89 (463)
Q Consensus 16 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~---~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (463)
-|.+++.++.|-....+.+|-+.+.+|++|.|+-.-.. . ......+++++..++.+..-.. .+..+....
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~---~~~~~~~~~- 79 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTT---ENDEEDIAA- 79 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCC---CChHHHHHH-
Confidence 47788888999999999999999999999999543211 1 1112335788887775432111 111111111
Q ss_pred HHhcCchHHHHHHHHHhCCCCCCCceEEEeCCchh
Q 012474 90 NDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWH 124 (463)
Q Consensus 90 ~~~~~~~l~~~l~~l~~~~~~~~~pD~VI~D~~~~ 124 (463)
+...+. ...+...+ ..+|+||.|-...
T Consensus 80 ---a~~~~~-~a~~~~~~----~~~dLlVLDEi~~ 106 (159)
T cd00561 80 ---AAEGWA-FAKEAIAS----GEYDLVILDEINY 106 (159)
T ss_pred ---HHHHHH-HHHHHHhc----CCCCEEEEechHh
Confidence 112222 22223332 5699999998654
No 191
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=70.77 E-value=1.2e+02 Score=30.52 Aligned_cols=107 Identities=13% Similarity=0.206 Sum_probs=69.8
Q ss_pred ceeeccChhh---hhcCCCCccccc---ccChhhH-HHHHhhCC----ceeccccccchhhhHHHHHHHhhceeecCCcc
Q 012474 339 HIVKWAPQQE---VLAHPAVGGFWT---HNGWNST-LESICEGV----PMICQPCFGDQLVNARYVSHVWRVGLHLERKF 407 (463)
Q Consensus 339 ~~~~~vpq~~---lL~~~~~~~~I~---hgG~~s~-~eal~~Gv----P~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~ 407 (463)
++.+.+|+.+ ++.-+++ ++. .-|+|-+ .|.++++. |+|+--+.+ |. +. +.-++.++. .
T Consensus 365 ~~~~~v~~~el~alYr~ADV--~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaG-----aa--~~-l~~AllVNP-~ 433 (487)
T TIGR02398 365 FFTRSLPYEEVSAWFAMADV--MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAG-----AA--VE-LKGALLTNP-Y 433 (487)
T ss_pred EEcCCCCHHHHHHHHHhCCE--EEECccccccCcchhhHHhhhcCCCCCEEEecccc-----ch--hh-cCCCEEECC-C
Confidence 3447777654 6667777 553 4588855 49999987 544443332 11 44 455677775 8
Q ss_pred CHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012474 408 ERREIETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILS 462 (463)
Q Consensus 408 t~~~l~~~i~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 462 (463)
+.++++++|.++|+.+. ++=+++.+++.+.+. ......=++.+++.+..
T Consensus 434 d~~~~A~ai~~AL~m~~-~Er~~R~~~l~~~v~-----~~d~~~W~~~fl~~l~~ 482 (487)
T TIGR02398 434 DPVRMDETIYVALAMPK-AEQQARMREMFDAVN-----YYDVQRWADEFLAAVSP 482 (487)
T ss_pred CHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHh-----hCCHHHHHHHHHHHhhh
Confidence 99999999999999743 233556666666665 34566667777777654
No 192
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=68.05 E-value=10 Score=29.61 Aligned_cols=36 Identities=31% Similarity=0.381 Sum_probs=32.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012474 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHT 50 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (463)
.|+++.+.+..-|-.-+..++..|.++||+|.++..
T Consensus 1 ~~v~~~~~~~~~~~lGl~~la~~l~~~G~~v~~~d~ 36 (121)
T PF02310_consen 1 IRVVLACVPGEVHPLGLLYLAAYLRKAGHEVDILDA 36 (121)
T ss_dssp -EEEEEEBTTSSTSHHHHHHHHHHHHTTBEEEEEES
T ss_pred CEEEEEeeCCcchhHHHHHHHHHHHHCCCeEEEECC
Confidence 378999999999999999999999999999998855
No 193
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=66.98 E-value=49 Score=32.68 Aligned_cols=95 Identities=12% Similarity=0.080 Sum_probs=55.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCcccccccHHHHHHHHHHhcC
Q 012474 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSNYPHFSFNSISESLWESEVSTENAISLLTVLNDKCV 94 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (463)
.|+.++..+.. .+.+++.|.+-|-+|..+++........+ ..... +. .+..... . .
T Consensus 286 gkv~v~g~~~~-----~~~l~~~l~elGmevv~~~t~~~~~~~~~-~~~~~--~~-~~~~~v~--------------~-~ 341 (422)
T TIGR02015 286 GRVTVSGYEGS-----ELLVVRLLLESGADVPYVGTAIPRTAWGA-EDKRW--LE-MLGVEVK--------------Y-R 341 (422)
T ss_pred CeEEEEcCCcc-----HHHHHHHHHHCCCEEEEEecCCCCccccH-HHHHH--HH-hcCCCce--------------e-c
Confidence 48888887765 88899999999999999877421111110 00000 00 0000000 0 0
Q ss_pred chHHHHHHHHHhCCCCCCCceEEEeCCchhhHHHHHHHcCCCeEEEe
Q 012474 95 VPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLR 141 (463)
Q Consensus 95 ~~l~~~l~~l~~~~~~~~~pD~VI~D~~~~~~~~~A~~~giP~v~~~ 141 (463)
..+.+.++.+.+ .+||++|.... +..+|+++|||.+.+.
T Consensus 342 ~dl~~~~~~l~~-----~~pDllig~s~---~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 342 ASLEDDMEAVLE-----FEPDLAIGTTP---LVQFAKEHGIPALYFT 380 (422)
T ss_pred cCHHHHHHHHhh-----CCCCEEEcCCc---chHHHHHcCCCEEEec
Confidence 123333344433 68999998853 5668999999999854
No 194
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=66.70 E-value=68 Score=27.16 Aligned_cols=97 Identities=10% Similarity=0.079 Sum_probs=56.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEe---CCCCC---CCCCCCCCceEEeCCCCCCCcccccccHHHHHHH
Q 012474 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIH---TNFNS---PNPSNYPHFSFNSISESLWESEVSTENAISLLTV 88 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~---~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (463)
--|.+++..+.|-....+.+|-+.+.+|+.|.++- ..... ....+ .++++..+..++..... +.....
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~-~~~~~~~~g~g~~~~~~---~~~~~~-- 79 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEP-HGVEFQVMGTGFTWETQ---NREADT-- 79 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHh-cCcEEEECCCCCeecCC---CcHHHH--
Confidence 45788888999999999999999999999997663 21111 11122 26778777754432211 111111
Q ss_pred HHHhcCchHHHHHHHHHhCCCCCCCceEEEeCCchh
Q 012474 89 LNDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWH 124 (463)
Q Consensus 89 ~~~~~~~~l~~~l~~l~~~~~~~~~pD~VI~D~~~~ 124 (463)
..+...+....+.+.. ..+|+||.|-...
T Consensus 80 --~~~~~~~~~a~~~l~~-----~~~DlvVLDEi~~ 108 (173)
T TIGR00708 80 --AIAKAAWQHAKEMLAD-----PELDLVLLDELTY 108 (173)
T ss_pred --HHHHHHHHHHHHHHhc-----CCCCEEEehhhHH
Confidence 1111222223333332 5699999998653
No 195
>PRK09620 hypothetical protein; Provisional
Probab=66.36 E-value=21 Score=31.89 Aligned_cols=39 Identities=23% Similarity=0.252 Sum_probs=28.5
Q ss_pred CCcEEEEEcCCCccCHHH------------HHHHHHHHHhCCCeEEEEeCC
Q 012474 13 KGRRVILFPLPLQGHINP------------MLQLASILYSKGFSITIIHTN 51 (463)
Q Consensus 13 ~~~~il~~~~~~~GH~~p------------~l~La~~L~~rGh~Vt~~~~~ 51 (463)
+++||++...|+.=.+.| -..||++|.++|++|+++...
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~ 52 (229)
T PRK09620 2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGY 52 (229)
T ss_pred CCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence 456777776664433322 478999999999999999864
No 196
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=66.34 E-value=51 Score=31.12 Aligned_cols=40 Identities=18% Similarity=0.191 Sum_probs=32.2
Q ss_pred cEEEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 012474 15 RRVILFPLP-LQGHINPMLQLASILYSKGFSITIIHTNFNS 54 (463)
Q Consensus 15 ~~il~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 54 (463)
+||++|+.= |-|-.--.-++|-.|++.|.+|.++++++.+
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvStDPAh 42 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVSTDPAH 42 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEEeCCCC
Confidence 577777765 5588888888999999999999999887554
No 197
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=65.76 E-value=84 Score=28.78 Aligned_cols=40 Identities=20% Similarity=0.231 Sum_probs=30.4
Q ss_pred CCCcEEEEEcCC--CccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012474 12 KKGRRVILFPLP--LQGHINPMLQLASILYSKGFSITIIHTN 51 (463)
Q Consensus 12 ~~~~~il~~~~~--~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (463)
.+..|++.++.+ +-|-..-...||..|++.|++|.++-.+
T Consensus 100 ~~~~~vi~vts~~~g~Gktt~a~nLA~~la~~g~~VllID~D 141 (274)
T TIGR03029 100 SEGRKALAVVSAKSGEGCSYIAANLAIVFSQLGEKTLLIDAN 141 (274)
T ss_pred CCCCeEEEEECCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 445565555554 4578888999999999999999998654
No 198
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=65.19 E-value=9.2 Score=34.15 Aligned_cols=37 Identities=14% Similarity=0.240 Sum_probs=26.3
Q ss_pred cEEEEEcCCCccCHHH------------HHHHHHHHHhCCCeEEEEeCC
Q 012474 15 RRVILFPLPLQGHINP------------MLQLASILYSKGFSITIIHTN 51 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p------------~l~La~~L~~rGh~Vt~~~~~ 51 (463)
|||++...|+.=.+.| -..||++|.++||+|+++...
T Consensus 1 ~~vliT~G~T~e~iD~VR~itN~SSG~iG~aLA~~L~~~G~~V~li~r~ 49 (229)
T PRK06732 1 MKILITSGGTTEPIDSVRGITNHSTGQLGKIIAETFLAAGHEVTLVTTK 49 (229)
T ss_pred CEEEEcCCCcccccCCceeecCccchHHHHHHHHHHHhCCCEEEEEECc
Confidence 4566555555444432 468899999999999999753
No 199
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=65.14 E-value=53 Score=29.73 Aligned_cols=32 Identities=22% Similarity=0.280 Sum_probs=23.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012474 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (463)
++|+++...+-| ..||+.|.++|+.|++.+..
T Consensus 3 ~~IlvlgGT~eg-----r~la~~L~~~g~~v~~Svat 34 (248)
T PRK08057 3 PRILLLGGTSEA-----RALARALAAAGVDIVLSLAG 34 (248)
T ss_pred ceEEEEechHHH-----HHHHHHHHhCCCeEEEEEcc
Confidence 567777666555 47899999999988876653
No 200
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=64.18 E-value=25 Score=33.03 Aligned_cols=36 Identities=14% Similarity=0.307 Sum_probs=31.5
Q ss_pred EEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 012474 19 LFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNS 54 (463)
Q Consensus 19 ~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 54 (463)
=++.|+.|-.--.+.||++|.+||..+-+++-.+..
T Consensus 54 NltvGGtGKTP~vi~la~~l~~rG~~~gvvSRGYgg 89 (336)
T COG1663 54 NLTVGGTGKTPVVIWLAEALQARGVRVGVVSRGYGG 89 (336)
T ss_pred cEEECCCCcCHHHHHHHHHHHhcCCeeEEEecCcCC
Confidence 357789999999999999999999999999986543
No 201
>PRK14099 glycogen synthase; Provisional
Probab=63.92 E-value=11 Score=37.94 Aligned_cols=41 Identities=15% Similarity=0.214 Sum_probs=31.0
Q ss_pred CCCcEEEEEcCCC------ccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012474 12 KKGRRVILFPLPL------QGHINPMLQLASILYSKGFSITIIHTNF 52 (463)
Q Consensus 12 ~~~~~il~~~~~~------~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 52 (463)
|++|||++++.-. .|=-...-.|.++|+++||+|.+++|.+
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y 47 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGY 47 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 4679999987532 1333456788899999999999999954
No 202
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=63.62 E-value=87 Score=26.17 Aligned_cols=29 Identities=14% Similarity=0.174 Sum_probs=23.3
Q ss_pred CCCCcccccccCh------hhHHHHHhhCCceecccc
Q 012474 352 HPAVGGFWTHNGW------NSTLESICEGVPMICQPC 382 (463)
Q Consensus 352 ~~~~~~~I~hgG~------~s~~eal~~GvP~l~~P~ 382 (463)
.+.+ +++|+|- +.+.+|...++|+|++.-
T Consensus 63 ~~~v--~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~g 97 (164)
T cd07039 63 KLGV--CLGSSGPGAIHLLNGLYDAKRDRAPVLAIAG 97 (164)
T ss_pred CCEE--EEECCCCcHHHHHHHHHHHHhcCCCEEEEec
Confidence 4555 8888774 478999999999999973
No 203
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=63.12 E-value=14 Score=36.02 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=22.9
Q ss_pred CCCccCHHHHHHHHHHHHhCCCeEEEE
Q 012474 22 LPLQGHINPMLQLASILYSKGFSITII 48 (463)
Q Consensus 22 ~~~~GH~~p~l~La~~L~~rGh~Vt~~ 48 (463)
..+.|-..-.+.|.++|++||++|-=+
T Consensus 9 ~SG~GKTTvT~glm~aL~~rg~~Vqpf 35 (451)
T COG1797 9 SSGSGKTTVTLGLMRALRRRGLKVQPF 35 (451)
T ss_pred CCCCcHHHHHHHHHHHHHhcCCccccc
Confidence 345599999999999999999998653
No 204
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=62.57 E-value=16 Score=34.74 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=27.5
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCC-eEEEEeCC
Q 012474 13 KGRRVILFPLPLQGHINPMLQLASILYSKGF-SITIIHTN 51 (463)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh-~Vt~~~~~ 51 (463)
+..||+++-.|+.| ..+|+.|++.|+ +++++-.+
T Consensus 23 ~~~~VlIiG~GglG-----s~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 23 REKHVLIVGAGALG-----AANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred cCCcEEEECCCHHH-----HHHHHHHHHcCCCEEEEEcCC
Confidence 36789999998876 678999999998 67776553
No 205
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=62.47 E-value=37 Score=33.45 Aligned_cols=41 Identities=17% Similarity=0.222 Sum_probs=35.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 012474 14 GRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNS 54 (463)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 54 (463)
...|+++..++.|-.--...||..|..+|++|.+++.+.++
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R 140 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR 140 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence 45677777778899999999999999999999999987654
No 206
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=61.19 E-value=1.2e+02 Score=32.25 Aligned_cols=102 Identities=12% Similarity=0.172 Sum_probs=59.9
Q ss_pred EEEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCcccccccHHHHHHHHHH-hc
Q 012474 16 RVILFPLP-LQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSNYPHFSFNSISESLWESEVSTENAISLLTVLND-KC 93 (463)
Q Consensus 16 ~il~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 93 (463)
.|.+.+.. ..|-..-.+.|++.|.++|.+|-++=|-... ++. .......+.. ..
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~G~~Vg~fKPi~~~------------p~~------------~~~~~~~~~~~~~ 59 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERKGVKVGFFKPIAQP------------PLT------------MSEVEALLASGQL 59 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEeCCcccC------------CCC------------HHHHHHHHhccCC
Confidence 35555444 4589999999999999999999998763211 000 0000011100 11
Q ss_pred CchHHHHHHHHHhCCCCCCCceEEEeCCchh---------hHHHHHHHcCCCeEEEeCch
Q 012474 94 VVPFQDCLAKLISNGDQEEPVTCLITDAIWH---------FAQTVADTLRLPRIVLRTSS 144 (463)
Q Consensus 94 ~~~l~~~l~~l~~~~~~~~~pD~VI~D~~~~---------~~~~~A~~~giP~v~~~~~~ 144 (463)
...+...++.+.+.. .+.|+||+|.... ....+|+.++.|++.+...-
T Consensus 60 ~~~~~~I~~~~~~l~---~~~D~VLIEGa~~~~~~~~~~~~na~iA~~L~~pVILV~~~~ 116 (684)
T PRK05632 60 DELLEEIVARYHALA---KDCDVVLVEGLDPTRKHPFEFSLNAEIAKNLGAEVVLVSSGG 116 (684)
T ss_pred hHHHHHHHHHHHHhc---cCCCEEEEeCcCCCCcCcccCchHHHHHHHhCCCEEEEECCC
Confidence 122222333332211 4689999877532 23678999999999887664
No 207
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=60.99 E-value=21 Score=38.20 Aligned_cols=110 Identities=16% Similarity=0.142 Sum_probs=66.9
Q ss_pred eeeccChh---hhhcCCCCcccccc---cCh-hhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCCccCHHHH
Q 012474 340 IVKWAPQQ---EVLAHPAVGGFWTH---NGW-NSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREI 412 (463)
Q Consensus 340 ~~~~vpq~---~lL~~~~~~~~I~h---gG~-~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~t~~~l 412 (463)
+.+++++. ++++.+++ ++.- -|+ .++.||+++|+|-...|+..+--.-+. + +.-|+.++. -+.+++
T Consensus 346 ~~~~~~~~~l~~ly~~aDv--~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~---~-l~~~llv~P-~d~~~l 418 (726)
T PRK14501 346 FYRSLPFEELVALYRAADV--ALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAA---E-LAEALLVNP-NDIEGI 418 (726)
T ss_pred EeCCCCHHHHHHHHHhccE--EEecccccccCcccceEEEEcCCCCceEEEecccchhH---H-hCcCeEECC-CCHHHH
Confidence 33667764 46778887 7753 355 588999999876333333322111111 2 233666665 789999
Q ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012474 413 ETAIRRVTVEAEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILS 462 (463)
Q Consensus 413 ~~~i~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 462 (463)
+++|.++|+.+. +.-+++.+++.+.+. ..+...-++++++.+.+
T Consensus 419 a~ai~~~l~~~~-~e~~~r~~~~~~~v~-----~~~~~~w~~~~l~~l~~ 462 (726)
T PRK14501 419 AAAIKRALEMPE-EEQRERMQAMQERLR-----RYDVHKWASDFLDELRE 462 (726)
T ss_pred HHHHHHHHcCCH-HHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHH
Confidence 999999998532 233444445554443 45677777777776653
No 208
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=60.45 E-value=30 Score=32.74 Aligned_cols=35 Identities=17% Similarity=0.379 Sum_probs=30.8
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 012474 20 FPLPLQGHINPMLQLASILYSKGFSITIIHTNFNS 54 (463)
Q Consensus 20 ~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 54 (463)
++.|+.|-.--.+.|++.|.++|++|.+++-.+..
T Consensus 43 ltvGGTGKTP~v~~L~~~L~~~G~~~~IlSRGYg~ 77 (326)
T PF02606_consen 43 LTVGGTGKTPLVIWLARLLQARGYRPAILSRGYGR 77 (326)
T ss_pred cccCCCCchHHHHHHHHHHHhcCCceEEEcCCCCC
Confidence 56778899999999999999999999999986543
No 209
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=60.45 E-value=18 Score=31.56 Aligned_cols=39 Identities=18% Similarity=0.176 Sum_probs=35.5
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012474 13 KGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (463)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (463)
++.||++.+.++-.|-....-++.-|..+|++|+++...
T Consensus 81 ~~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~ 119 (201)
T cd02070 81 KKGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRD 119 (201)
T ss_pred CCCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCC
Confidence 467999999999999999999999999999999888764
No 210
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=60.33 E-value=1.4e+02 Score=27.32 Aligned_cols=27 Identities=11% Similarity=0.067 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhC---CCeEEEEeCCCCCCC
Q 012474 30 PMLQLASILYSK---GFSITIIHTNFNSPN 56 (463)
Q Consensus 30 p~l~La~~L~~r---Gh~Vt~~~~~~~~~~ 56 (463)
-+..|+++|... |++|+++.|..+...
T Consensus 15 Gl~aL~~~l~~~~~~~~~V~VVAP~~eqSg 44 (261)
T PRK13931 15 GLEVLEQIATELAGPDGEVWTVAPAFEQSG 44 (261)
T ss_pred hHHHHHHHHHHhccCCCeEEEEeCCCCCCC
Confidence 356677777663 479999999765443
No 211
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=60.30 E-value=19 Score=35.96 Aligned_cols=54 Identities=20% Similarity=0.309 Sum_probs=40.5
Q ss_pred CCCcEEEEEcCCCccCHHH------------HHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeC
Q 012474 12 KKGRRVILFPLPLQGHINP------------MLQLASILYSKGFSITIIHTNFNSPNPSNYPHFSFNSI 68 (463)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p------------~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~g~~~~~~ 68 (463)
-+++||++...|+.=.+.| -..||+++..+|++||+++.+.... ...+++++.+
T Consensus 254 l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~~~---~p~~v~~i~V 319 (475)
T PRK13982 254 LAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVDLA---DPQGVKVIHV 319 (475)
T ss_pred cCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcCCC---CCCCceEEEe
Confidence 4688999999998877776 4789999999999999999854322 1135655544
No 212
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=59.90 E-value=19 Score=31.27 Aligned_cols=40 Identities=13% Similarity=0.036 Sum_probs=36.7
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012474 12 KKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (463)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (463)
+.+.||++.+.++-.|-....-++.-|..+|++|+++..+
T Consensus 82 ~~~~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~ 121 (197)
T TIGR02370 82 EVLGKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRD 121 (197)
T ss_pred CCCCeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCC
Confidence 3467999999999999999999999999999999999875
No 213
>PLN02470 acetolactate synthase
Probab=58.91 E-value=27 Score=36.25 Aligned_cols=91 Identities=13% Similarity=0.132 Sum_probs=51.2
Q ss_pred ecCCcccCC--HHHHHHHHHHHhcCCCceEEEEcCCCCCCCccCCCCchhHHHHhcCCCceee--------ccCh--hhh
Q 012474 282 SFGSIVVVN--VTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIVK--------WAPQ--QEV 349 (463)
Q Consensus 282 s~Gs~~~~~--~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~vpq--~~l 349 (463)
+|||....+ ....+.+++.|++.+.+.|+-+.+... ..+-+.+.+ .+++..+. +.-+ ..+
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~------~~l~dal~~--~~~i~~i~~rhE~~A~~~Adgyar~ 73 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGAS------MEIHQALTR--SNCIRNVLCRHEQGEVFAAEGYAKA 73 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCccc------HHHHHHHhc--cCCceEEEeccHHHHHHHHHHHHHH
Confidence 456655422 233567888888888888887766531 112222211 01122221 1111 112
Q ss_pred hcCCCCcccccccCh------hhHHHHHhhCCceecccc
Q 012474 350 LAHPAVGGFWTHNGW------NSTLESICEGVPMICQPC 382 (463)
Q Consensus 350 L~~~~~~~~I~hgG~------~s~~eal~~GvP~l~~P~ 382 (463)
-. .++++++|.|- +.+.+|...++|+|++.-
T Consensus 74 tg--~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~G 110 (585)
T PLN02470 74 SG--KVGVCIATSGPGATNLVTGLADALLDSVPLVAITG 110 (585)
T ss_pred hC--CCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEec
Confidence 22 34448888884 588999999999999963
No 214
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=58.60 E-value=40 Score=32.93 Aligned_cols=45 Identities=20% Similarity=0.287 Sum_probs=38.7
Q ss_pred CCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCC
Q 012474 11 QKKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSP 55 (463)
Q Consensus 11 ~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~ 55 (463)
..++-.|+++-.-+.|-.-.+-.||+.|..+|+.|.+++.+-+++
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~Rp 141 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRP 141 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCCh
Confidence 345677888888899999999999999999999999999876553
No 215
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=58.37 E-value=18 Score=28.58 Aligned_cols=36 Identities=22% Similarity=0.305 Sum_probs=33.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012474 16 RVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (463)
Q Consensus 16 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (463)
||++.+.++-.|..-..-++.-|..+|++|.+....
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~ 36 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLR 36 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCC
Confidence 688999999999999999999999999999999884
No 216
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=57.97 E-value=14 Score=31.80 Aligned_cols=37 Identities=14% Similarity=0.088 Sum_probs=30.0
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012474 16 RVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNF 52 (463)
Q Consensus 16 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 52 (463)
||++--.|+.|=+.-...+.++|.+.|++|+++.++.
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~g~~V~vI~S~~ 38 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDEGAEVTPIVSET 38 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhCcCEEEEEEchh
Confidence 5777767776666666799999999999999998853
No 217
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=57.20 E-value=15 Score=34.43 Aligned_cols=40 Identities=20% Similarity=0.199 Sum_probs=32.2
Q ss_pred cEEEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 012474 15 RRVILFPLP-LQGHINPMLQLASILYSKGFSITIIHTNFNS 54 (463)
Q Consensus 15 ~~il~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 54 (463)
||++++..- |-|-.--..++|-.++++|++|.++++++.+
T Consensus 1 ~r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS~Dpa~ 41 (305)
T PF02374_consen 1 MRILFFGGKGGVGKTTVAAALALALARRGKRTLLVSTDPAH 41 (305)
T ss_dssp -SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEESSTTT
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEeecCCCc
Confidence 677777665 5599999999999999999999999998654
No 218
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=56.55 E-value=8.7 Score=31.95 Aligned_cols=31 Identities=19% Similarity=0.336 Sum_probs=25.5
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012474 16 RVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (463)
Q Consensus 16 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (463)
||.++..|..|+ ++|..|..+||+|++.+.+
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~g~~V~l~~~~ 31 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADNGHEVTLWGRD 31 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHCTEEEEEETSC
T ss_pred CEEEECcCHHHH-----HHHHHHHHcCCEEEEEecc
Confidence 566776666554 7899999999999999986
No 219
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=56.23 E-value=20 Score=29.04 Aligned_cols=39 Identities=26% Similarity=0.314 Sum_probs=36.1
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012474 12 KKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHT 50 (463)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (463)
+++.||++.+.+.-||-...--+++.|...|.+|.....
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~ 48 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGL 48 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCC
Confidence 689999999999999999999999999999999987665
No 220
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=56.22 E-value=1e+02 Score=30.37 Aligned_cols=95 Identities=17% Similarity=0.194 Sum_probs=52.2
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCcccccccHHHHHHHHHHhcCc
Q 012474 16 RVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSNYPHFSFNSISESLWESEVSTENAISLLTVLNDKCVV 95 (463)
Q Consensus 16 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (463)
|++++..+.. .+.+++.|.+-|-+|..+.+........+ +.... ++. ..... ....
T Consensus 282 kv~v~g~~~~-----~~~la~~L~elGmevv~~~t~~~~~~~~~-~~~~~--l~~-~~~~v---------------~~~~ 337 (416)
T cd01980 282 RVLVSGYEGN-----ELLVARLLIESGAEVPYVSTSIPKTSLSA-PDYEW--LSA-LGVEV---------------RYRK 337 (416)
T ss_pred eEEEECCCch-----hHHHHHHHHHcCCEEEEEecCCCChhhhH-HHHHH--HHh-cCCcc---------------ccCC
Confidence 7766655543 55699999999999999988532111000 00000 000 00000 0001
Q ss_pred hHHHHHHHHHhCCCCCCCceEEEeCCchhhHHHHHHHcCCCeEEEeC
Q 012474 96 PFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRT 142 (463)
Q Consensus 96 ~l~~~l~~l~~~~~~~~~pD~VI~D~~~~~~~~~A~~~giP~v~~~~ 142 (463)
.+.+.+..+.+ .+||++|... .+..+|+++|||.+.+..
T Consensus 338 ~~~~~~~~~~~-----~~pDl~Ig~s---~~~~~a~~~giP~~r~~~ 376 (416)
T cd01980 338 SLEDDIAAVEE-----YRPDLAIGTT---PLVQYAKEKGIPALYYTN 376 (416)
T ss_pred CHHHHHHHHhh-----cCCCEEEeCC---hhhHHHHHhCCCEEEecC
Confidence 12222233333 6799999884 367799999999988554
No 221
>PRK11519 tyrosine kinase; Provisional
Probab=56.16 E-value=1.9e+02 Score=30.92 Aligned_cols=40 Identities=15% Similarity=0.255 Sum_probs=32.0
Q ss_pred CCcEEEEEcC--CCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012474 13 KGRRVILFPL--PLQGHINPMLQLASILYSKGFSITIIHTNF 52 (463)
Q Consensus 13 ~~~~il~~~~--~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 52 (463)
++-|+++++. |+-|-..-...||..|+..|++|.++-.+.
T Consensus 524 ~~~kvi~vts~~~geGKTt~a~nLA~~la~~g~rvLlID~Dl 565 (719)
T PRK11519 524 AQNNVLMMTGVSPSIGKTFVCANLAAVISQTNKRVLLIDCDM 565 (719)
T ss_pred CCceEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 3456666655 466889999999999999999999997653
No 222
>PRK05920 aromatic acid decarboxylase; Validated
Probab=56.16 E-value=20 Score=31.34 Aligned_cols=38 Identities=11% Similarity=0.140 Sum_probs=30.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012474 14 GRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNF 52 (463)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 52 (463)
.+||++--.|+ ....=...+.++|.+.||+|+++.++.
T Consensus 3 ~krIllgITGs-iaa~ka~~lvr~L~~~g~~V~vi~T~~ 40 (204)
T PRK05920 3 MKRIVLAITGA-SGAIYGVRLLECLLAADYEVHLVISKA 40 (204)
T ss_pred CCEEEEEEeCH-HHHHHHHHHHHHHHHCCCEEEEEEChh
Confidence 46676665555 445788999999999999999999864
No 223
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=56.11 E-value=1.1e+02 Score=25.11 Aligned_cols=136 Identities=20% Similarity=0.236 Sum_probs=71.6
Q ss_pred EEEEecCCcccCCHHHHHHHHHHHhcCCCceEEEEcCCCCCCCccCCCCchhHHHHhcCCCceeeccChhhhhcCCCCcc
Q 012474 278 VMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIVKWAPQQEVLAHPAVGG 357 (463)
Q Consensus 278 ~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~ 357 (463)
.|.|-+||.. +....+++...|++.+..+-+.+...+ ..|+.+.+ |+...+- ..+++
T Consensus 2 ~V~Ii~gs~S--D~~~~~~a~~~L~~~gi~~~~~V~saH--------R~p~~l~~----------~~~~~~~-~~~~v-- 58 (150)
T PF00731_consen 2 KVAIIMGSTS--DLPIAEEAAKTLEEFGIPYEVRVASAH--------RTPERLLE----------FVKEYEA-RGADV-- 58 (150)
T ss_dssp EEEEEESSGG--GHHHHHHHHHHHHHTT-EEEEEE--TT--------TSHHHHHH----------HHHHTTT-TTESE--
T ss_pred eEEEEeCCHH--HHHHHHHHHHHHHHcCCCEEEEEEecc--------CCHHHHHH----------HHHHhcc-CCCEE--
Confidence 4666677766 677788899999998866554443322 14444421 1111110 23455
Q ss_pred cccccChh----hHHHHHhhCCceeccccccchhhhHH----HHHHHhhceeecCC---ccCHHHHHHHHHHHhccchHH
Q 012474 358 FWTHNGWN----STLESICEGVPMICQPCFGDQLVNAR----YVSHVWRVGLHLER---KFERREIETAIRRVTVEAEGQ 426 (463)
Q Consensus 358 ~I~hgG~~----s~~eal~~GvP~l~~P~~~DQ~~na~----rv~~~~G~G~~l~~---~~t~~~l~~~i~~~l~~~~~~ 426 (463)
||.=.|.. ++.-++. -.|+|.+|....+..... .++---|+++..-. ..+...+...|-.+ .| +
T Consensus 59 iIa~AG~~a~Lpgvva~~t-~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i~~~~nAA~~A~~ILa~-~d---~ 133 (150)
T PF00731_consen 59 IIAVAGMSAALPGVVASLT-TLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGINNGFNAALLAARILAL-KD---P 133 (150)
T ss_dssp EEEEEESS--HHHHHHHHS-SS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SSTHHHHHHHHHHHHHHT-T----H
T ss_pred EEEECCCcccchhhheecc-CCCEEEeecCcccccCcccHHHHHhccCCCCceEEEccCchHHHHHHHHHHhc-CC---H
Confidence 88877753 4444444 799999998876543222 22220155543322 34444444444333 34 6
Q ss_pred HHHHHHHHHHHHHHH
Q 012474 427 EMRERIMHLKEKLEL 441 (463)
Q Consensus 427 ~~~~~a~~~~~~~~~ 441 (463)
+++++.+..+++.++
T Consensus 134 ~l~~kl~~~~~~~~~ 148 (150)
T PF00731_consen 134 ELREKLRAYREKMKE 148 (150)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 788888888877763
No 224
>PLN02939 transferase, transferring glycosyl groups
Probab=55.71 E-value=24 Score=38.38 Aligned_cols=42 Identities=17% Similarity=0.378 Sum_probs=32.0
Q ss_pred CCCcEEEEEcCCC-----ccCH-HHHHHHHHHHHhCCCeEEEEeCCCC
Q 012474 12 KKGRRVILFPLPL-----QGHI-NPMLQLASILYSKGFSITIIHTNFN 53 (463)
Q Consensus 12 ~~~~~il~~~~~~-----~GH~-~p~l~La~~L~~rGh~Vt~~~~~~~ 53 (463)
.++|||++++.-. .|-+ ...-.|.++|+++||+|.+++|.+.
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~ 526 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYD 526 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCCc
Confidence 6799999987532 2333 3466899999999999999999643
No 225
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=55.48 E-value=1.3e+02 Score=25.81 Aligned_cols=99 Identities=13% Similarity=0.120 Sum_probs=55.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCC-----CC-CCC-CCCceEEeCCCCCCCcccccccHHHHH
Q 012474 14 GRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNS-----PN-PSN-YPHFSFNSISESLWESEVSTENAISLL 86 (463)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~-----~~-~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~ 86 (463)
+--|.+++..+.|-.-..+.+|-+-+-+|.+|.++..-... .. ... ..++.|+.+++.+........ .
T Consensus 28 ~Gli~V~TG~GKGKTTAAlG~alRa~GhG~rv~vvQFiKg~~~~GE~~~~~~~~~~v~~~~~~~g~tw~~~~~~---~-- 102 (198)
T COG2109 28 KGLIIVFTGNGKGKTTAALGLALRALGHGLRVGVVQFIKGGWKYGEEAALEKFGLGVEFHGMGEGFTWETQDRE---A-- 102 (198)
T ss_pred cCeEEEEecCCCChhHHHHHHHHHHhcCCCEEEEEEEeecCcchhHHHHHHhhccceeEEecCCceeCCCcCcH---H--
Confidence 44488889999998877777776666667777766531111 00 011 135778777755543322111 1
Q ss_pred HHHHHhcCchHHHHHHHHHhCCCCCCCceEEEeCCchh
Q 012474 87 TVLNDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWH 124 (463)
Q Consensus 87 ~~~~~~~~~~l~~~l~~l~~~~~~~~~pD~VI~D~~~~ 124 (463)
.. ..+........+.+.+ .++|+||.|.+++
T Consensus 103 -d~-~aa~~~w~~a~~~l~~-----~~ydlviLDEl~~ 133 (198)
T COG2109 103 -DI-AAAKAGWEHAKEALAD-----GKYDLVILDELNY 133 (198)
T ss_pred -HH-HHHHHHHHHHHHHHhC-----CCCCEEEEehhhH
Confidence 11 2222333334444443 5799999998775
No 226
>PRK10867 signal recognition particle protein; Provisional
Probab=54.17 E-value=52 Score=32.53 Aligned_cols=42 Identities=17% Similarity=0.227 Sum_probs=35.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCCCCC
Q 012474 14 GRRVILFPLPLQGHINPMLQLASILYSK-GFSITIIHTNFNSP 55 (463)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~~~~~ 55 (463)
+..|+++..++.|-.--...||..|..+ |+.|.+++.+.++.
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~ 142 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP 142 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccch
Confidence 4556677777889999999999999999 99999999876543
No 227
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=54.04 E-value=1.8e+02 Score=26.63 Aligned_cols=57 Identities=11% Similarity=0.124 Sum_probs=38.5
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCC
Q 012474 13 KGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSNYPHFSFNSISESL 72 (463)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~g~~~~~~~~~~ 72 (463)
.+|||+++.+++...-. ...++|.++|++|.++..............++...+|.+.
T Consensus 2 ~~~kvaVl~~pG~n~d~---e~~~Al~~aG~~v~~v~~~~~~~~~~~l~~~DgLvipGGf 58 (261)
T PRK01175 2 ESIRVAVLRMEGTNCED---ETVKAFRRLGVEPEYVHINDLAAERKSVSDYDCLVIPGGF 58 (261)
T ss_pred CCCEEEEEeCCCCCCHH---HHHHHHHHCCCcEEEEeeccccccccchhhCCEEEECCCC
Confidence 46899999999886443 5578888899999998764221111222457777777654
No 228
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=53.97 E-value=17 Score=34.25 Aligned_cols=36 Identities=14% Similarity=0.175 Sum_probs=28.8
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012474 12 KKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNF 52 (463)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 52 (463)
+..|||+++-.|+.| ..+|..|.+.||+|+++....
T Consensus 3 ~~~m~I~IiG~GaiG-----~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 3 SETPRIGIIGTGAIG-----GFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcCcEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEeCC
Confidence 346899999888766 456788999999999998743
No 229
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=53.75 E-value=45 Score=33.32 Aligned_cols=36 Identities=14% Similarity=0.206 Sum_probs=27.8
Q ss_pred cE-EEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012474 15 RR-VILFPLP-LQGHINPMLQLASILYSKGFSITIIHT 50 (463)
Q Consensus 15 ~~-il~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (463)
|+ +++.... +.|-..-...|++.|+++|++|..+-+
T Consensus 3 m~~i~I~gt~s~~GKT~it~~L~~~L~~~G~~V~~fK~ 40 (451)
T PRK01077 3 MPALVIAAPASGSGKTTVTLGLMRALRRRGLRVQPFKV 40 (451)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhCCCCcceeec
Confidence 44 4444333 448999999999999999999998866
No 230
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=53.34 E-value=51 Score=27.54 Aligned_cols=34 Identities=15% Similarity=0.204 Sum_probs=28.4
Q ss_pred cCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 012474 21 PLPLQGHINPMLQLASILYSKGFSITIIHTNFNS 54 (463)
Q Consensus 21 ~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 54 (463)
+-|+.|-..-...||..|+++|++|.++-.+...
T Consensus 7 ~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~ 40 (169)
T cd02037 7 GKGGVGKSTVAVNLALALAKLGYKVGLLDADIYG 40 (169)
T ss_pred CCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCC
Confidence 4456788899999999999999999999876543
No 231
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=53.06 E-value=46 Score=32.97 Aligned_cols=36 Identities=14% Similarity=-0.034 Sum_probs=27.3
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012474 13 KGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFN 53 (463)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 53 (463)
+.|||+++-.++.-| +|++.|.+.++-..+++.+.|
T Consensus 3 ~~~kvLviG~g~reh-----al~~~~~~~~~~~~~~~~pgn 38 (426)
T PRK13789 3 VKLKVLLIGSGGRES-----AIAFALRKSNLLSELKVFPGN 38 (426)
T ss_pred CCcEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEECCc
Confidence 459999999998777 689999998865555554444
No 232
>PRK04946 hypothetical protein; Provisional
Probab=52.37 E-value=12 Score=31.81 Aligned_cols=56 Identities=18% Similarity=0.094 Sum_probs=37.4
Q ss_pred HHHHHHHhcCCCceEEEEcCCCCCCCccCCCCchhHHHHhcCCCceeeccCh-hhhhcCCCCcccccccChhhHH
Q 012474 295 LEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIVKWAPQ-QEVLAHPAVGGFWTHNGWNSTL 368 (463)
Q Consensus 295 ~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpq-~~lL~~~~~~~~I~hgG~~s~~ 368 (463)
...+......+.+++.++.+.. .++.+. .+..|+.| ..|++.+++ =-.|||.|.++
T Consensus 113 ~~fl~~a~~~g~r~v~IIHGkG-----------~gvLk~-----~V~~wL~q~~~V~af~~A--~~~~GG~GA~~ 169 (181)
T PRK04946 113 GALIAACRKEHVFCACVMHGHG-----------KHILKQ-----QTPLWLAQHPDVMAFHQA--PKEWGGDAALL 169 (181)
T ss_pred HHHHHHHHHcCCCEEEEEcCCC-----------HhHHHH-----HHHHHHcCCchhheeecc--CcccCCceEEE
Confidence 3344444456888887777653 233322 46689886 778888888 88999998654
No 233
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=52.32 E-value=42 Score=31.51 Aligned_cols=35 Identities=17% Similarity=0.394 Sum_probs=30.5
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 012474 20 FPLPLQGHINPMLQLASILYSKGFSITIIHTNFNS 54 (463)
Q Consensus 20 ~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 54 (463)
++.|++|-.--.+.|++.|.++|++|.+++-.+..
T Consensus 36 itvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg~ 70 (311)
T TIGR00682 36 LSVGGTGKTPVVVWLAELLKDRGLRVGVLSRGYGS 70 (311)
T ss_pred cccCCcChHHHHHHHHHHHHHCCCEEEEECCCCCC
Confidence 45788899999999999999999999999985543
No 234
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=52.22 E-value=56 Score=32.38 Aligned_cols=100 Identities=21% Similarity=0.217 Sum_probs=53.9
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCcccccccHHHHHHHHHHh
Q 012474 13 KGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSNYPHFSFNSISESLWESEVSTENAISLLTVLNDK 92 (463)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (463)
++.|++++..+ .-...+++.|.+.|-+|..+......+...+ .+.+..-....... ..
T Consensus 298 ~gk~v~i~~~~-----~~~~~l~~~L~e~G~~v~~v~~~~~~~~~~~--~~~~~~~~~~~~~~---------------~v 355 (428)
T cd01965 298 GGKRVAIAGDP-----DLLLGLSRFLLEMGAEPVAAVTGTDNPPFEK--RMELLASLEGIPAE---------------VV 355 (428)
T ss_pred cCCEEEEEcCh-----HHHHHHHHHHHHcCCcceEEEEcCCCchhHH--HHHHhhhhcCCCce---------------EE
Confidence 46788877433 3567889999999999887766332111110 01000000000000 01
Q ss_pred cCchHHHHHHHHHhCCCCCCCceEEEeCCchhhHHHHHHHcCCCeEEEeC
Q 012474 93 CVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRT 142 (463)
Q Consensus 93 ~~~~l~~~l~~l~~~~~~~~~pD~VI~D~~~~~~~~~A~~~giP~v~~~~ 142 (463)
....+.++.+.+.+ .+||+||.+.. ...+|+++|+|++.+..
T Consensus 356 ~~~d~~el~~~i~~-----~~pdliig~~~---~~~~a~~~~ip~i~~~~ 397 (428)
T cd01965 356 FVGDLWDLESLAKE-----EPVDLLIGNSH---GRYLARDLGIPLVRVGF 397 (428)
T ss_pred ECCCHHHHHHHhhc-----cCCCEEEECch---hHHHHHhcCCCEEEecC
Confidence 11222333333333 57999999974 46788999999986443
No 235
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=51.43 E-value=63 Score=31.93 Aligned_cols=42 Identities=17% Similarity=0.269 Sum_probs=34.6
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEeCCCCCC
Q 012474 14 GRRVILFPLPLQGHINPMLQLASILY-SKGFSITIIHTNFNSP 55 (463)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~~~~ 55 (463)
+-.++++..+|.|-.--...||..|. ++|+.|.+++.+.++.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~ 141 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP 141 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence 44567777778899999999999997 5799999999976543
No 236
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=51.42 E-value=1.2e+02 Score=25.12 Aligned_cols=29 Identities=21% Similarity=0.156 Sum_probs=24.7
Q ss_pred cCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 012474 21 PLPLQGHINPMLQLASILYSKGFSITIIH 49 (463)
Q Consensus 21 ~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 49 (463)
+.++.|-..-.+.|++.|.++|.+|.++=
T Consensus 5 t~~~~GKT~va~~L~~~l~~~g~~V~~~k 33 (166)
T TIGR00347 5 TDTGVGKTVASSALAAKLKKAGYSVGYYK 33 (166)
T ss_pred CCCCccHHHHHHHHHHHHHHCCCcEEEEE
Confidence 34566889999999999999999999863
No 237
>PRK06849 hypothetical protein; Provisional
Probab=50.81 E-value=31 Score=33.58 Aligned_cols=36 Identities=14% Similarity=0.235 Sum_probs=28.6
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012474 13 KGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNF 52 (463)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 52 (463)
++|+|+++.... ...+.+++.|.++||+|+++....
T Consensus 3 ~~~~VLI~G~~~----~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 3 TKKTVLITGARA----PAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCCEEEEeCCCc----HHHHHHHHHHHHCCCEEEEEeCCc
Confidence 468888885433 358999999999999999997753
No 238
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=50.12 E-value=28 Score=31.85 Aligned_cols=39 Identities=13% Similarity=0.073 Sum_probs=34.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012474 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFN 53 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 53 (463)
|+|.|..=|+-|...-...||..|+++|++|.++=-+++
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~G~rvlliD~Dpq 39 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKRGKKVLQIGCDPK 39 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCcEEEEecCCC
Confidence 788888777889999999999999999999999866543
No 239
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=50.07 E-value=28 Score=31.81 Aligned_cols=39 Identities=10% Similarity=0.009 Sum_probs=33.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012474 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFN 53 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 53 (463)
|+|.+..=||-|-..-...||..|+++|++|.++=-+.+
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~g~rVLliD~D~q 39 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKLGKRVLQIGCDPK 39 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhCCCeEEEEecCcc
Confidence 778888777889999999999999999999999866543
No 240
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.85 E-value=1.1e+02 Score=27.29 Aligned_cols=36 Identities=17% Similarity=0.133 Sum_probs=26.0
Q ss_pred HHHHHHHHHhCCCCCCCceEEEeCCchhh---HHHHHHHcCCCeEE
Q 012474 97 FQDCLAKLISNGDQEEPVTCLITDAIWHF---AQTVADTLRLPRIV 139 (463)
Q Consensus 97 l~~~l~~l~~~~~~~~~pD~VI~D~~~~~---~~~~A~~~giP~v~ 139 (463)
+..+++++.+ -++.+.|..+.+ +..+|+..|||++.
T Consensus 140 M~~~m~~Lk~-------r~l~flDs~T~a~S~a~~iAk~~gVp~~~ 178 (250)
T COG2861 140 MEKLMEALKE-------RGLYFLDSGTIANSLAGKIAKEIGVPVIK 178 (250)
T ss_pred HHHHHHHHHH-------CCeEEEcccccccchhhhhHhhcCCceee
Confidence 3346666654 589999987643 35788999999987
No 241
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=49.45 E-value=34 Score=29.36 Aligned_cols=39 Identities=26% Similarity=0.297 Sum_probs=27.8
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCCCC-CCCCCCCceEEeCC
Q 012474 31 MLQLASILYSKGFSITIIHTNFNSP-NPSNYPHFSFNSIS 69 (463)
Q Consensus 31 ~l~La~~L~~rGh~Vt~~~~~~~~~-~~~~~~g~~~~~~~ 69 (463)
.-.|+..|+++||+||+.+...... ....+.|++...++
T Consensus 23 ve~L~~~l~~~g~~v~Vyc~~~~~~~~~~~y~gv~l~~i~ 62 (185)
T PF09314_consen 23 VEELAPRLVSKGIDVTVYCRSDYYPYKEFEYNGVRLVYIP 62 (185)
T ss_pred HHHHHHHHhcCCceEEEEEccCCCCCCCcccCCeEEEEeC
Confidence 4567788888999999998854432 23445678888776
No 242
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=49.37 E-value=36 Score=30.01 Aligned_cols=39 Identities=13% Similarity=0.120 Sum_probs=36.4
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012474 13 KGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (463)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (463)
++.||++.+.++-.|-....-++-.|..+|++|+++..+
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~ 125 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVM 125 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCC
Confidence 567999999999999999999999999999999999875
No 243
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=48.83 E-value=39 Score=31.43 Aligned_cols=39 Identities=10% Similarity=0.099 Sum_probs=35.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012474 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFN 53 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 53 (463)
|||++.-=||.|-..-...||..|+++|++|.++--+++
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~DpQ 39 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDPK 39 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccCC
Confidence 789999999999999999999999999999999887654
No 244
>PRK13768 GTPase; Provisional
Probab=48.81 E-value=48 Score=30.10 Aligned_cols=37 Identities=16% Similarity=0.265 Sum_probs=30.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012474 16 RVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNF 52 (463)
Q Consensus 16 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 52 (463)
.+++...++.|-..-+..++..|..+|++|.++..++
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~ 40 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP 40 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence 4555556677888889999999999999999998754
No 245
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=48.76 E-value=23 Score=30.30 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=29.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012474 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNF 52 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 52 (463)
+||++.-.|+.|=+ -...+.++|.++|++|.++.++.
T Consensus 2 k~Ill~vtGsiaa~-~~~~li~~L~~~g~~V~vv~T~~ 38 (182)
T PRK07313 2 KNILLAVSGSIAAY-KAADLTSQLTKRGYQVTVLMTKA 38 (182)
T ss_pred CEEEEEEeChHHHH-HHHHHHHHHHHCCCEEEEEEChh
Confidence 46777766665544 48999999999999999998864
No 246
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=48.41 E-value=19 Score=27.92 Aligned_cols=72 Identities=8% Similarity=-0.021 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHhcCCCceEEEEcCCCCCCCccCCCCchhHHHHhcCCCcee-------eccChhhhh---cCCCCcccc
Q 012474 290 NVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIV-------KWAPQQEVL---AHPAVGGFW 359 (463)
Q Consensus 290 ~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~vpq~~lL---~~~~~~~~I 359 (463)
..+....++.++++++.+.+.+..... .....+ ...+..+.. .|+....|+ ....+ ..
T Consensus 10 rGeia~r~~ra~r~~Gi~tv~v~s~~d--------~~s~~~--~~ad~~~~~~~~~~~~~yl~~e~I~~ia~~~g~--~~ 77 (110)
T PF00289_consen 10 RGEIAVRIIRALRELGIETVAVNSNPD--------TVSTHV--DMADEAYFEPPGPSPESYLNIEAIIDIARKEGA--DA 77 (110)
T ss_dssp -HHHHHHHHHHHHHTTSEEEEEEEGGG--------TTGHHH--HHSSEEEEEESSSGGGTTTSHHHHHHHHHHTTE--SE
T ss_pred CCHHHHHHHHHHHHhCCcceeccCchh--------cccccc--cccccceecCcchhhhhhccHHHHhhHhhhhcC--cc
Confidence 334567899999999999888776432 122222 233333333 355544433 34445 88
Q ss_pred cccChhhHHHHHhh
Q 012474 360 THNGWNSTLESICE 373 (463)
Q Consensus 360 ~hgG~~s~~eal~~ 373 (463)
.|+|+|-..|...+
T Consensus 78 i~pGyg~lse~~~f 91 (110)
T PF00289_consen 78 IHPGYGFLSENAEF 91 (110)
T ss_dssp EESTSSTTTTHHHH
T ss_pred cccccchhHHHHHH
Confidence 89999877766443
No 247
>PRK00784 cobyric acid synthase; Provisional
Probab=48.14 E-value=1.1e+02 Score=31.06 Aligned_cols=34 Identities=15% Similarity=0.267 Sum_probs=26.9
Q ss_pred EEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012474 17 VILFPLP-LQGHINPMLQLASILYSKGFSITIIHT 50 (463)
Q Consensus 17 il~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (463)
+++.... ..|-..-...|++.|.++|++|..+=+
T Consensus 5 ifItGT~T~vGKT~vt~~L~~~l~~~G~~v~~~Kp 39 (488)
T PRK00784 5 LMVQGTASDAGKSTLVAGLCRILARRGYRVAPFKA 39 (488)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCeEecccc
Confidence 4444333 459999999999999999999987755
No 248
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=48.01 E-value=21 Score=33.22 Aligned_cols=32 Identities=13% Similarity=0.245 Sum_probs=26.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012474 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (463)
|||+++-.|..| ..+|..|.+.||+|+++...
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhCCCeEEEEECC
Confidence 688888877665 56788899999999999873
No 249
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.72 E-value=81 Score=26.20 Aligned_cols=94 Identities=19% Similarity=0.206 Sum_probs=61.4
Q ss_pred hhhhh-cCCCCcccccccC---hhhHHHHHhhCCceeccc-cccchhhhHHHHHHHhhceeecCC-ccCHHHHHHHHHHH
Q 012474 346 QQEVL-AHPAVGGFWTHNG---WNSTLESICEGVPMICQP-CFGDQLVNARYVSHVWRVGLHLER-KFERREIETAIRRV 419 (463)
Q Consensus 346 q~~lL-~~~~~~~~I~hgG---~~s~~eal~~GvP~l~~P-~~~DQ~~na~rv~~~~G~G~~l~~-~~t~~~l~~~i~~~ 419 (463)
|..|+ .||++.+-+--.| .-|+.|.-.+|.=.+.== +.-=+..|+++.++ +|+=-.+-- ..|.++|.++..+=
T Consensus 65 rl~liraHPdLAgk~a~a~elta~S~~EQasAGLd~Ls~~E~a~f~~LN~aY~~r-FgfPfI~aVkg~~k~~Il~a~~~R 143 (176)
T COG3195 65 RLALIRAHPDLAGKAAIAGELTAESTSEQASAGLDRLSPEEFARFTELNAAYVER-FGFPFIIAVKGNTKDTILAAFERR 143 (176)
T ss_pred HHHHHHhChhhHHHHHHHHHhhhhhHHHHHhcCcccCCHHHHHHHHHHHHHHHHh-cCCceEEeecCCCHHHHHHHHHHH
Confidence 54433 4787732222222 357777777776553211 11125679999999 898866654 68899999999998
Q ss_pred hccchHHHHHHHHHHHHHHHH
Q 012474 420 TVEAEGQEMRERIMHLKEKLE 440 (463)
Q Consensus 420 l~~~~~~~~~~~a~~~~~~~~ 440 (463)
|+|++.+.+++.+..+.+..+
T Consensus 144 l~n~~e~E~~tAl~eI~rIA~ 164 (176)
T COG3195 144 LDNDREQEFATALAEIERIAL 164 (176)
T ss_pred hcccHHHHHHHHHHHHHHHHH
Confidence 988766778877777665443
No 250
>PRK14098 glycogen synthase; Provisional
Probab=47.65 E-value=32 Score=34.81 Aligned_cols=40 Identities=15% Similarity=0.287 Sum_probs=29.9
Q ss_pred CCcEEEEEcCCC------ccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012474 13 KGRRVILFPLPL------QGHINPMLQLASILYSKGFSITIIHTNF 52 (463)
Q Consensus 13 ~~~~il~~~~~~------~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 52 (463)
+.|||++++.-. .|=-...-.|.++|+++||+|.+++|.+
T Consensus 4 ~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y 49 (489)
T PRK14098 4 RNFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKY 49 (489)
T ss_pred CCcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 349999987532 1233456788999999999999999954
No 251
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=47.54 E-value=37 Score=30.34 Aligned_cols=34 Identities=21% Similarity=0.229 Sum_probs=25.5
Q ss_pred CceEEE-eCCch-hhHHHHHHHcCCCeEEEeCchhH
Q 012474 113 PVTCLI-TDAIW-HFAQTVADTLRLPRIVLRTSSIS 146 (463)
Q Consensus 113 ~pD~VI-~D~~~-~~~~~~A~~~giP~v~~~~~~~~ 146 (463)
-||+++ .|+.. .-+..=|..+|||+|.++-+.+.
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn~d 191 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTNCD 191 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCCCC
Confidence 388876 67644 55677788899999998887554
No 252
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=47.02 E-value=1.3e+02 Score=29.79 Aligned_cols=89 Identities=22% Similarity=0.279 Sum_probs=53.9
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCcccccccHHHHHHHHHHh
Q 012474 13 KGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSNYPHFSFNSISESLWESEVSTENAISLLTVLNDK 92 (463)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (463)
.+.|++++..+ .....+++.|.+-|-+|..+......+.. ..++ .......|.
T Consensus 310 ~Gkrvai~~~~-----~~~~~l~~~l~elGm~v~~~~~~~~~~~~--------~~~~----~~~~~~~D~---------- 362 (432)
T TIGR01285 310 GGKKVAIAAEP-----DLLAAWATFFTSMGAQIVAAVTTTGSPLL--------QKLP----VETVVIGDL---------- 362 (432)
T ss_pred CCCEEEEEcCH-----HHHHHHHHHHHHCCCEEEEEEeCCCCHHH--------HhCC----cCcEEeCCH----------
Confidence 46778877533 36688899999999999887774432211 0011 110000111
Q ss_pred cCchHHHHHHHHHhCCCCCCCceEEEeCCchhhHHHHHHHcCCCeEEEe
Q 012474 93 CVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLR 141 (463)
Q Consensus 93 ~~~~l~~~l~~l~~~~~~~~~pD~VI~D~~~~~~~~~A~~~giP~v~~~ 141 (463)
. .++++.+. .++|++|.+.. ...+|+++|||++.+.
T Consensus 363 -----~-~l~~~i~~----~~~dliig~s~---~k~~A~~l~ip~ir~g 398 (432)
T TIGR01285 363 -----E-DLEDLACA----AGADLLITNSH---GRALAQRLALPLVRAG 398 (432)
T ss_pred -----H-HHHHHHhh----cCCCEEEECcc---hHHHHHHcCCCEEEec
Confidence 1 22333332 56999998864 5779999999998743
No 253
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=46.17 E-value=58 Score=31.28 Aligned_cols=95 Identities=15% Similarity=0.134 Sum_probs=51.5
Q ss_pred eEEEEecCCcccCCHHHHHHHHHHHhcCCCceEEEEcCCCCCCCccCCCCch-hHH------HHhcCCCc----------
Q 012474 277 SVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPK-GFL------EMLDGRGH---------- 339 (463)
Q Consensus 277 ~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~-~~~------~~~~~~~~---------- 339 (463)
.+++.+.||.+...+. .++++.|++.+++++|+........ + -+|+ ++. ..+.....
T Consensus 3 ~i~~~~GGTGGHi~Pa--la~a~~l~~~g~~v~~vg~~~~~e~-~---l~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~ 76 (352)
T PRK12446 3 KIVFTGGGSAGHVTPN--LAIIPYLKEDNWDISYIGSHQGIEK-T---IIEKENIPYYSISSGKLRRYFDLKNIKDPFLV 76 (352)
T ss_pred eEEEEcCCcHHHHHHH--HHHHHHHHhCCCEEEEEECCCcccc-c---cCcccCCcEEEEeccCcCCCchHHHHHHHHHH
Confidence 4667777776653332 3455677777889998875543211 0 0111 010 00000000
Q ss_pred eeeccChhhhhc--CCCCcccccccChhh---HHHHHhhCCceec
Q 012474 340 IVKWAPQQEVLA--HPAVGGFWTHNGWNS---TLESICEGVPMIC 379 (463)
Q Consensus 340 ~~~~vpq~~lL~--~~~~~~~I~hgG~~s---~~eal~~GvP~l~ 379 (463)
+..++--..+++ +|++ +|++||+=| +..|...|+|+++
T Consensus 77 ~~~~~~~~~i~~~~kPdv--vi~~Ggy~s~p~~~aa~~~~~p~~i 119 (352)
T PRK12446 77 MKGVMDAYVRIRKLKPDV--IFSKGGFVSVPVVIGGWLNRVPVLL 119 (352)
T ss_pred HHHHHHHHHHHHhcCCCE--EEecCchhhHHHHHHHHHcCCCEEE
Confidence 001111123344 4666 999999986 8999999999976
No 254
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=46.09 E-value=48 Score=26.45 Aligned_cols=36 Identities=19% Similarity=0.317 Sum_probs=23.3
Q ss_pred cEEEEEcC-CCccCH--HHHHHHHHHHHhCCCeE-EEEeC
Q 012474 15 RRVILFPL-PLQGHI--NPMLQLASILYSKGFSI-TIIHT 50 (463)
Q Consensus 15 ~~il~~~~-~~~GH~--~p~l~La~~L~~rGh~V-t~~~~ 50 (463)
||++|+-. +-+|+- .-.+.+|+.+.++||+| .++-.
T Consensus 1 m~~~iv~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vFf~ 40 (128)
T PRK00207 1 MRYAIAVTGPAYGTQQASSAYQFAQALLAEGHELVSVFFY 40 (128)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEEe
Confidence 55555443 333544 45788999999999985 54433
No 255
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=45.90 E-value=1.4e+02 Score=26.97 Aligned_cols=94 Identities=16% Similarity=0.022 Sum_probs=50.8
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCcccccccHHHHHHHHHHhc
Q 012474 14 GRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSNYPHFSFNSISESLWESEVSTENAISLLTVLNDKC 93 (463)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (463)
.|+|+++...+ =...|+++|...++.+++.+............+- . ..+
T Consensus 2 ~~~ilvlGGT~-----Dar~la~~L~~~~~~~~~ss~t~~g~~l~~~~~~--~------------------------~~~ 50 (257)
T COG2099 2 MMRILLLGGTS-----DARALAKKLAAAPVDIILSSLTGYGAKLAEQIGP--V------------------------RVG 50 (257)
T ss_pred CceEEEEeccH-----HHHHHHHHhhccCccEEEEEcccccccchhccCC--e------------------------eec
Confidence 35566553332 2478999999999888887764332222210110 1 011
Q ss_pred CchHHHHHHHHHhCCCCCCCceEEEeCCchhh------HHHHHHHcCCCeEEEeC
Q 012474 94 VVPFQDCLAKLISNGDQEEPVTCLITDAIWHF------AQTVADTLRLPRIVLRT 142 (463)
Q Consensus 94 ~~~l~~~l~~l~~~~~~~~~pD~VI~D~~~~~------~~~~A~~~giP~v~~~~ 142 (463)
...-.+.+.++++. .+.|+||=-.+-+. ++.+|+..|||++.+--
T Consensus 51 G~l~~e~l~~~l~e----~~i~llIDATHPyAa~iS~Na~~aake~gipy~r~eR 101 (257)
T COG2099 51 GFLGAEGLAAFLRE----EGIDLLIDATHPYAARISQNAARAAKETGIPYLRLER 101 (257)
T ss_pred CcCCHHHHHHHHHH----cCCCEEEECCChHHHHHHHHHHHHHHHhCCcEEEEEC
Confidence 11112334444443 56888773322222 35789999999999543
No 256
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=45.54 E-value=1.5e+02 Score=29.36 Aligned_cols=96 Identities=19% Similarity=0.231 Sum_probs=53.6
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCcccccccHHHHHHHH---
Q 012474 13 KGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSNYPHFSFNSISESLWESEVSTENAISLLTVL--- 89 (463)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 89 (463)
++.|++++.-+ .-.+.+++.|.+-|-+|..+..........+ .....+...
T Consensus 302 ~gkrv~i~g~~-----~~~~~la~~L~elGm~v~~~~~~~~~~~~~~---------------------~~~~~l~~~~~~ 355 (435)
T cd01974 302 HGKKFALYGDP-----DFLIGLTSFLLELGMEPVHVLTGNGGKRFEK---------------------EMQALLDASPYG 355 (435)
T ss_pred CCCEEEEEcCh-----HHHHHHHHHHHHCCCEEEEEEeCCCCHHHHH---------------------HHHHHHhhcCCC
Confidence 46778777533 3478888888888999977665321110000 000000000
Q ss_pred ---HHhcCchHHHHHHHHHhCCCCCCCceEEEeCCchhhHHHHHHHcCCCeEEEeC
Q 012474 90 ---NDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRT 142 (463)
Q Consensus 90 ---~~~~~~~l~~~l~~l~~~~~~~~~pD~VI~D~~~~~~~~~A~~~giP~v~~~~ 142 (463)
.-.....+.+..+.+.+ .+||++|.... ...+|+++|+|++.+..
T Consensus 356 ~~~~v~~~~d~~e~~~~i~~-----~~pDliiG~s~---~~~~a~~~gip~v~~~~ 403 (435)
T cd01974 356 AGAKVYPGKDLWHLRSLLFT-----EPVDLLIGNTY---GKYIARDTDIPLVRFGF 403 (435)
T ss_pred CCcEEEECCCHHHHHHHHhh-----cCCCEEEECcc---HHHHHHHhCCCEEEeeC
Confidence 00011223333333333 57999999864 57889999999987543
No 257
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=45.43 E-value=21 Score=30.30 Aligned_cols=69 Identities=19% Similarity=0.284 Sum_probs=41.0
Q ss_pred cCCCCcccccccChhhHHHHHhhCCceecccccc-----------------------chhhhHHHHHHHhhceeecCCcc
Q 012474 351 AHPAVGGFWTHNGWNSTLESICEGVPMICQPCFG-----------------------DQLVNARYVSHVWRVGLHLERKF 407 (463)
Q Consensus 351 ~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~-----------------------DQ~~na~rv~~~~G~G~~l~~~~ 407 (463)
..+++ +|++||...+..... ++|+|-+|..+ ........+.+.+|+-+..-.--
T Consensus 33 ~g~dV--iIsRG~ta~~lr~~~-~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~~~ll~~~i~~~~~~ 109 (176)
T PF06506_consen 33 EGADV--IISRGGTAELLRKHV-SIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESIEELLGVDIKIYPYD 109 (176)
T ss_dssp TT-SE--EEEEHHHHHHHHCC--SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHHHHHHT-EEEEEEES
T ss_pred cCCeE--EEECCHHHHHHHHhC-CCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHHHHHhCCceEEEEEC
Confidence 34555 999999988888877 99999999742 23334555555344433333345
Q ss_pred CHHHHHHHHHHHhcc
Q 012474 408 ERREIETAIRRVTVE 422 (463)
Q Consensus 408 t~~~l~~~i~~~l~~ 422 (463)
+.+++...|.++..+
T Consensus 110 ~~~e~~~~i~~~~~~ 124 (176)
T PF06506_consen 110 SEEEIEAAIKQAKAE 124 (176)
T ss_dssp SHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHc
Confidence 677888888777654
No 258
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=45.36 E-value=71 Score=27.05 Aligned_cols=99 Identities=12% Similarity=0.082 Sum_probs=45.0
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCC------CCCCCCceEEeCCCCCCCcccccccHHHHHH
Q 012474 14 GRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPN------PSNYPHFSFNSISESLWESEVSTENAISLLT 87 (463)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (463)
+-.|-+++..+.|-....+.+|=+-+-+|.+|.++-.=..... ..+.+++.+..+..++........ ..
T Consensus 3 ~G~i~vytG~GKGKTTAAlGlalRA~G~G~rV~ivQFlKg~~~~GE~~~l~~l~~~~~~~~g~~f~~~~~~~~--~~--- 77 (172)
T PF02572_consen 3 RGLIQVYTGDGKGKTTAALGLALRAAGHGMRVLIVQFLKGGRYSGELKALKKLPNVEIERFGKGFVWRMNEEE--ED--- 77 (172)
T ss_dssp ---EEEEESSSS-HHHHHHHHHHHHHCTT--EEEEESS--SS--HHHHHHGGGT--EEEE--TT----GGGHH--HH---
T ss_pred CcEEEEEeCCCCCchHHHHHHHHHHHhCCCEEEEEEEecCCCCcCHHHHHHhCCeEEEEEcCCcccccCCCcH--HH---
Confidence 4458889999999888777776666666777777754221000 123345777777653322211111 01
Q ss_pred HHHHhcCchHHHHHHHHHhCCCCCCCceEEEeCCchh
Q 012474 88 VLNDKCVVPFQDCLAKLISNGDQEEPVTCLITDAIWH 124 (463)
Q Consensus 88 ~~~~~~~~~l~~~l~~l~~~~~~~~~pD~VI~D~~~~ 124 (463)
...+...+....+.+.. ..+|+||.|-...
T Consensus 78 --~~~~~~~~~~a~~~i~~-----~~~dlvILDEi~~ 107 (172)
T PF02572_consen 78 --RAAAREGLEEAKEAISS-----GEYDLVILDEINY 107 (172)
T ss_dssp --HHHHHHHHHHHHHHTT------TT-SEEEEETHHH
T ss_pred --HHHHHHHHHHHHHHHhC-----CCCCEEEEcchHH
Confidence 12222333333333332 5799999998653
No 259
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=45.24 E-value=52 Score=29.28 Aligned_cols=42 Identities=29% Similarity=0.366 Sum_probs=33.8
Q ss_pred cEEEEEcC--CCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCC
Q 012474 15 RRVILFPL--PLQGHINPMLQLASILYSKGFSITIIHTNFNSPN 56 (463)
Q Consensus 15 ~~il~~~~--~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~ 56 (463)
|.|+.+.. ||-|-.--.+.||.+|+++|-.|+++=.+++.+.
T Consensus 1 M~vItf~s~KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl 44 (231)
T PF07015_consen 1 MPVITFASSKGGAGKTTAAMALASELAARGARVALIDADPNQPL 44 (231)
T ss_pred CCeEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcH
Confidence 44444444 4679999999999999999999999999877644
No 260
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=44.79 E-value=43 Score=30.43 Aligned_cols=39 Identities=21% Similarity=0.405 Sum_probs=34.6
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012474 13 KGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (463)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (463)
.+..++++-.+|.|-..=..+|+.+|.++|+.|+|++.+
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~ 142 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAP 142 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHH
Confidence 567889999999888888899999999889999999984
No 261
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.47 E-value=30 Score=28.45 Aligned_cols=36 Identities=17% Similarity=0.133 Sum_probs=27.0
Q ss_pred CCceEEEeCCch----------hhHHHHHHHcCCCeEEEeCchhHH
Q 012474 112 EPVTCLITDAIW----------HFAQTVADTLRLPRIVLRTSSISS 147 (463)
Q Consensus 112 ~~pD~VI~D~~~----------~~~~~~A~~~giP~v~~~~~~~~~ 147 (463)
++||+|++..-. .-+..+|+++|+|++-++....+.
T Consensus 123 E~PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~N 168 (219)
T KOG0081|consen 123 ENPDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGTN 168 (219)
T ss_pred CCCCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCcC
Confidence 789999987643 234678999999999877665443
No 262
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=44.35 E-value=2.2e+02 Score=29.53 Aligned_cols=52 Identities=12% Similarity=0.151 Sum_probs=29.5
Q ss_pred cccChhhHHHHHhhCCc--e--ecccc-ccchhhhHHHHHHHhhceeecCCccCHHHHHHHHHHHh
Q 012474 360 THNGWNSTLESICEGVP--M--ICQPC-FGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVT 420 (463)
Q Consensus 360 ~hgG~~s~~eal~~GvP--~--l~~P~-~~DQ~~na~rv~~~~G~G~~l~~~~t~~~l~~~i~~~l 420 (463)
.+||+|+...+....-+ + +.+|- +.+........++. .+|++.|.+.+++++
T Consensus 524 ~~GG~gs~v~~~l~~~~~~~~~~gi~d~f~~~g~~~~l~~~~---------Gl~~~~I~~~i~~~l 580 (581)
T PRK12315 524 LDGGFGEKIARYYGNSDMKVLNYGAKKEFNDRVPVEELYKRN---------HLTPEQIVEDILSVL 580 (581)
T ss_pred cCCCHHHHHHHHHHcCCCeEEEecCCCCCCCCCCHHHHHHHH---------CcCHHHHHHHHHHHh
Confidence 47999886666554333 3 34443 33332223333332 478888888887765
No 263
>PRK05595 replicative DNA helicase; Provisional
Probab=44.24 E-value=66 Score=32.03 Aligned_cols=37 Identities=19% Similarity=0.291 Sum_probs=30.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEeCCC
Q 012474 16 RVILFPLPLQGHINPMLQLASILY-SKGFSITIIHTNF 52 (463)
Q Consensus 16 ~il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~ 52 (463)
=+++-..|+.|-..-.+.+|..++ ++|+.|.|++.+.
T Consensus 203 liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEm 240 (444)
T PRK05595 203 MILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEM 240 (444)
T ss_pred EEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCC
Confidence 355677778899999999998876 5699999999863
No 264
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=44.24 E-value=34 Score=28.46 Aligned_cols=35 Identities=17% Similarity=0.133 Sum_probs=27.2
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012474 12 KKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (463)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (463)
-+..+|+++-.|.. ....++.|.+.||+||++.++
T Consensus 11 l~~~~vlVvGGG~v-----a~rka~~Ll~~ga~V~VIsp~ 45 (157)
T PRK06719 11 LHNKVVVIIGGGKI-----AYRKASGLKDTGAFVTVVSPE 45 (157)
T ss_pred cCCCEEEEECCCHH-----HHHHHHHHHhCCCEEEEEcCc
Confidence 45677888866653 377899999999999999754
No 265
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=43.45 E-value=22 Score=32.10 Aligned_cols=24 Identities=17% Similarity=0.369 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCC
Q 012474 29 NPMLQLASILYSKGFSITIIHTNF 52 (463)
Q Consensus 29 ~p~l~La~~L~~rGh~Vt~~~~~~ 52 (463)
..+-.|+++|+++||+|++++|..
T Consensus 20 dv~~~L~kaL~~~G~~V~Vi~P~y 43 (245)
T PF08323_consen 20 DVVGSLPKALAKQGHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEE-T
T ss_pred HHHHHHHHHHHhcCCeEEEEEccc
Confidence 356789999999999999999963
No 266
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.44 E-value=76 Score=30.61 Aligned_cols=43 Identities=16% Similarity=0.257 Sum_probs=36.6
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 012474 12 KKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNS 54 (463)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 54 (463)
.++.-|.|+-.-+.|-...|-.+|.-+.++|+.+.+++.+-++
T Consensus 99 ~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFR 141 (483)
T KOG0780|consen 99 GKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFR 141 (483)
T ss_pred CCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccc
Confidence 3455677777778899999999999999999999999987554
No 267
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=43.41 E-value=83 Score=26.23 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=20.4
Q ss_pred cccccCh------hhHHHHHhhCCceecccc
Q 012474 358 FWTHNGW------NSTLESICEGVPMICQPC 382 (463)
Q Consensus 358 ~I~hgG~------~s~~eal~~GvP~l~~P~ 382 (463)
+++++|- +.+.+|...++|+|++.-
T Consensus 63 ~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 63 LVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred EEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 7777663 478899999999999974
No 268
>PRK08760 replicative DNA helicase; Provisional
Probab=42.83 E-value=1e+02 Score=31.00 Aligned_cols=39 Identities=15% Similarity=0.182 Sum_probs=31.6
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCC
Q 012474 14 GRRVILFPLPLQGHINPMLQLASILYS-KGFSITIIHTNF 52 (463)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~ 52 (463)
+-=+++-.-|+.|-..-.+.+|...+. .|+.|.|++-+.
T Consensus 229 G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEM 268 (476)
T PRK08760 229 TDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEM 268 (476)
T ss_pred CceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccC
Confidence 334667777888999999999998875 599999998864
No 269
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=42.74 E-value=26 Score=29.99 Aligned_cols=35 Identities=14% Similarity=0.343 Sum_probs=26.0
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012474 17 VILFPLPLQGHINPMLQLASILYSKGFSITIIHTNF 52 (463)
Q Consensus 17 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 52 (463)
|++--.|+.|-.. ...+.++|.++|++|.++.++.
T Consensus 2 illgvtGsiaa~k-a~~lir~L~~~g~~V~vv~T~~ 36 (181)
T TIGR00421 2 IVVAMTGASGVIY-GIRLLEVLKEAGVEVHLVISDW 36 (181)
T ss_pred EEEEEECHHHHHH-HHHHHHHHHHCCCEEEEEECcc
Confidence 4454455545444 4889999999999999999864
No 270
>PRK06321 replicative DNA helicase; Provisional
Probab=42.64 E-value=1.1e+02 Score=30.82 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=30.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEeCCC
Q 012474 17 VILFPLPLQGHINPMLQLASILY-SKGFSITIIHTNF 52 (463)
Q Consensus 17 il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~ 52 (463)
+++-..|+.|-..-.+.+|...+ +.|+.|.|++-+-
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEM 265 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEM 265 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccC
Confidence 56677788899999999999987 4599999998863
No 271
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=42.45 E-value=1.8e+02 Score=24.82 Aligned_cols=26 Identities=27% Similarity=0.337 Sum_probs=20.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhC
Q 012474 15 RRVILFPLPLQGHINPMLQLASILYSK 41 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~r 41 (463)
.+++++ .|+.||..=|+.|.+.|.++
T Consensus 39 ~~~lVv-lGSGGHT~EMlrLl~~l~~~ 64 (211)
T KOG3339|consen 39 LSTLVV-LGSGGHTGEMLRLLEALQDL 64 (211)
T ss_pred ceEEEE-EcCCCcHHHHHHHHHHHHhh
Confidence 455554 46669999999999999776
No 272
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=42.43 E-value=37 Score=28.87 Aligned_cols=39 Identities=8% Similarity=0.061 Sum_probs=26.4
Q ss_pred HHHHHHHhCCCCCCCceEEEeCCchhh--HHHHHHHcCCCeEEEeC
Q 012474 99 DCLAKLISNGDQEEPVTCLITDAIWHF--AQTVADTLRLPRIVLRT 142 (463)
Q Consensus 99 ~~l~~l~~~~~~~~~pD~VI~D~~~~~--~~~~A~~~giP~v~~~~ 142 (463)
..++++.+ .+||+||....... ...--+..|||++.+..
T Consensus 60 ~n~E~ll~-----l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~~ 100 (186)
T cd01141 60 LNVELIVA-----LKPDLVILYGGFQAQTILDKLEQLGIPVLYVNE 100 (186)
T ss_pred CCHHHHhc-----cCCCEEEEecCCCchhHHHHHHHcCCCEEEeCC
Confidence 35677776 78999998653322 33445678999988753
No 273
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=42.31 E-value=25 Score=31.21 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=19.7
Q ss_pred CHHHHHHHHHHHHhCCCeEEEEeCC
Q 012474 27 HINPMLQLASILYSKGFSITIIHTN 51 (463)
Q Consensus 27 H~~p~l~La~~L~~rGh~Vt~~~~~ 51 (463)
|+..|...|++|.++||+|+++..+
T Consensus 47 ~~saMRhfa~~L~~~G~~V~Y~~~~ 71 (224)
T PF04244_consen 47 FFSAMRHFADELRAKGFRVHYIELD 71 (224)
T ss_dssp HHHHHHHHHHHHHHTT--EEEE-TT
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 5678999999999999999999885
No 274
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=42.19 E-value=51 Score=28.59 Aligned_cols=42 Identities=14% Similarity=0.239 Sum_probs=32.1
Q ss_pred CCCcEEEEEcCC--CccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012474 12 KKGRRVILFPLP--LQGHINPMLQLASILYSKGFSITIIHTNFN 53 (463)
Q Consensus 12 ~~~~~il~~~~~--~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 53 (463)
+..+|++.++.+ +.|=..-...||..|+++|++|.++-.+..
T Consensus 14 ~~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~ 57 (204)
T TIGR01007 14 GAEIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMR 57 (204)
T ss_pred cCCCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 334676666654 557888899999999999999998876543
No 275
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=42.12 E-value=53 Score=27.31 Aligned_cols=29 Identities=14% Similarity=0.112 Sum_probs=25.1
Q ss_pred EEEEecCCcccCCHHHHHHHHHHHhcCCC
Q 012474 278 VMYVSFGSIVVVNVTEFLEIAWGLANSRV 306 (463)
Q Consensus 278 ~v~vs~Gs~~~~~~~~~~~~~~al~~~~~ 306 (463)
.+|+++||........++..+.++.+.+.
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~ 31 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALAD 31 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCC
Confidence 69999999988777888889999988764
No 276
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=42.11 E-value=40 Score=28.90 Aligned_cols=32 Identities=25% Similarity=0.397 Sum_probs=22.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012474 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (463)
|||.++-. ||+ -+.+|-.|+++||+|+.+-.+
T Consensus 1 M~I~ViGl---Gyv--Gl~~A~~lA~~G~~V~g~D~~ 32 (185)
T PF03721_consen 1 MKIAVIGL---GYV--GLPLAAALAEKGHQVIGVDID 32 (185)
T ss_dssp -EEEEE-----STT--HHHHHHHHHHTTSEEEEE-S-
T ss_pred CEEEEECC---Ccc--hHHHHHHHHhCCCEEEEEeCC
Confidence 78888844 444 378899999999999998775
No 277
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=42.02 E-value=40 Score=28.69 Aligned_cols=36 Identities=19% Similarity=0.212 Sum_probs=27.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012474 16 RVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNF 52 (463)
Q Consensus 16 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 52 (463)
||++.-.|+ +...-...+.++|.++|++|.++.++.
T Consensus 2 ~I~lgvtGs-~~a~~~~~ll~~L~~~g~~V~vi~T~~ 37 (177)
T TIGR02113 2 KILLAVTGS-IAAYKAADLTSQLTKLGYDVTVLMTQA 37 (177)
T ss_pred EEEEEEcCH-HHHHHHHHHHHHHHHCCCEEEEEEChH
Confidence 455555555 455566799999999999999998863
No 278
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=41.59 E-value=1.3e+02 Score=30.01 Aligned_cols=34 Identities=9% Similarity=0.083 Sum_probs=27.1
Q ss_pred EEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012474 17 VILFPLP-LQGHINPMLQLASILYSKGFSITIIHT 50 (463)
Q Consensus 17 il~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (463)
|++.... +.|-..-...|++.|+++|++|..+-+
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~G~~V~~fK~ 36 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRRKLRVQPFKV 36 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCceeEEcc
Confidence 4444333 458899999999999999999998865
No 279
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=40.89 E-value=2e+02 Score=23.49 Aligned_cols=36 Identities=14% Similarity=0.223 Sum_probs=31.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012474 17 VILFPLPLQGHINPMLQLASILYSKGFSITIIHTNF 52 (463)
Q Consensus 17 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 52 (463)
+++...++.|-...+..++..|.++|++|.++..+.
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~ 37 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDP 37 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC
Confidence 667777888999999999999999999999988753
No 280
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=40.64 E-value=62 Score=27.13 Aligned_cols=24 Identities=21% Similarity=0.164 Sum_probs=17.8
Q ss_pred CHHHHHHHHHHHHh-CCCeEEEEeC
Q 012474 27 HINPMLQLASILYS-KGFSITIIHT 50 (463)
Q Consensus 27 H~~p~l~La~~L~~-rGh~Vt~~~~ 50 (463)
|.....+|+++|.+ +|.++.+..-
T Consensus 1 H~~aA~Al~eal~~~~~~~~~v~v~ 25 (169)
T PF06925_consen 1 HNSAARALAEALERRRGPDAEVEVV 25 (169)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEE
Confidence 78889999999988 5655555443
No 281
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=40.62 E-value=32 Score=32.07 Aligned_cols=31 Identities=16% Similarity=0.192 Sum_probs=25.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012474 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHT 50 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (463)
|||+++-.|+.| ..+|..|.++||+|+++..
T Consensus 1 mkI~IiG~G~iG-----~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVG-----GTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHH-----HHHHHHHHHCCCceEEEec
Confidence 789999777765 4578889999999999987
No 282
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=40.46 E-value=35 Score=30.35 Aligned_cols=33 Identities=18% Similarity=0.294 Sum_probs=25.8
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012474 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNF 52 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 52 (463)
|+++++-.|-.| ..+|+.|.+.||+|+.+-.+.
T Consensus 1 m~iiIiG~G~vG-----~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGAGRVG-----RSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred CEEEEECCcHHH-----HHHHHHHHhCCCceEEEEcCH
Confidence 566666666433 689999999999999998753
No 283
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=40.37 E-value=83 Score=29.69 Aligned_cols=43 Identities=19% Similarity=0.192 Sum_probs=37.3
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 012474 12 KKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNS 54 (463)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 54 (463)
.+.--|+|+-.-+.|-.--.-.||..|.+.|+.|.++..+-++
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFR 179 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFR 179 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHH
Confidence 3466677888889999999999999999999999999987554
No 284
>PRK04148 hypothetical protein; Provisional
Probab=40.32 E-value=60 Score=26.14 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=26.4
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012474 12 KKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNF 52 (463)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 52 (463)
.+.+|++.+..| .| ..+|+.|.+.||+|+.+=...
T Consensus 15 ~~~~kileIG~G-fG-----~~vA~~L~~~G~~ViaIDi~~ 49 (134)
T PRK04148 15 GKNKKIVELGIG-FY-----FKVAKKLKESGFDVIVIDINE 49 (134)
T ss_pred ccCCEEEEEEec-CC-----HHHHHHHHHCCCEEEEEECCH
Confidence 346889999888 44 346788889999999887643
No 285
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=40.07 E-value=40 Score=28.93 Aligned_cols=37 Identities=14% Similarity=0.119 Sum_probs=29.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCC
Q 012474 15 RRVILFPLPLQGHINPMLQLASILYS-KGFSITIIHTNF 52 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~ 52 (463)
+||++.-.|+.| .+=...++++|.+ .||+|.++.++.
T Consensus 2 k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~ 39 (185)
T PRK06029 2 KRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQA 39 (185)
T ss_pred CEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHH
Confidence 467776666655 6669999999999 599999999964
No 286
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=40.04 E-value=50 Score=28.70 Aligned_cols=40 Identities=25% Similarity=0.255 Sum_probs=31.3
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012474 12 KKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (463)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (463)
.-++||.+=..|+.|-.+.|+.=|++|.++|.+|.+-.-+
T Consensus 3 rGrLkIflG~apGVGKTy~ML~ea~~l~~~G~DVViG~ve 42 (211)
T PF02702_consen 3 RGRLKIFLGAAPGVGKTYAMLQEAHRLKEQGVDVVIGYVE 42 (211)
T ss_dssp ---EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEE--
T ss_pred CccEEEEEecCCCCCHHHHHHHHHHHHHHCCCCEEEEEec
Confidence 3478999999999999999999999999999999987654
No 287
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=39.95 E-value=38 Score=31.76 Aligned_cols=34 Identities=12% Similarity=0.242 Sum_probs=27.9
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012474 13 KGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (463)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (463)
.+|||+|+-.|..| ..+|+.|.++||+|++....
T Consensus 3 ~~m~I~iiG~G~~G-----~~lA~~l~~~G~~V~~~~r~ 36 (308)
T PRK14619 3 QPKTIAILGAGAWG-----STLAGLASANGHRVRVWSRR 36 (308)
T ss_pred CCCEEEEECccHHH-----HHHHHHHHHCCCEEEEEeCC
Confidence 46899999777655 57899999999999988763
No 288
>PRK11914 diacylglycerol kinase; Reviewed
Probab=39.37 E-value=54 Score=30.69 Aligned_cols=81 Identities=10% Similarity=-0.010 Sum_probs=48.1
Q ss_pred EEEEecCCcccCCHHHHHHHHHHHhcCCCceEEEEcCCCCCCCccCCCCchhHHHHhcCCCceeeccChhhhhcCCCCcc
Q 012474 278 VMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIVKWAPQQEVLAHPAVGG 357 (463)
Q Consensus 278 ~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~ 357 (463)
.+.++--|......+.+..+.+.+++.+..+.+..... +....+ +. ........++
T Consensus 12 ~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~-----------~~~~~~-------~a----~~~~~~~~d~-- 67 (306)
T PRK11914 12 TVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTD-----------AHDARH-------LV----AAALAKGTDA-- 67 (306)
T ss_pred EEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCC-----------HHHHHH-------HH----HHHHhcCCCE--
Confidence 45555544433344567778888888777654433321 111110 00 1112233456
Q ss_pred cccccChhhHHHHH----hhCCceecccc
Q 012474 358 FWTHNGWNSTLESI----CEGVPMICQPC 382 (463)
Q Consensus 358 ~I~hgG~~s~~eal----~~GvP~l~~P~ 382 (463)
+|.-||=||+.|++ ..++|+-++|.
T Consensus 68 vvv~GGDGTi~evv~~l~~~~~~lgiiP~ 96 (306)
T PRK11914 68 LVVVGGDGVISNALQVLAGTDIPLGIIPA 96 (306)
T ss_pred EEEECCchHHHHHhHHhccCCCcEEEEeC
Confidence 99999999999987 34799999995
No 289
>PRK12448 dihydroxy-acid dehydratase; Provisional
Probab=39.27 E-value=2.3e+02 Score=29.29 Aligned_cols=47 Identities=13% Similarity=0.191 Sum_probs=34.4
Q ss_pred hHHHHHHHHHhCCCCCCCceEEE----eCCchhhHHHHHHHcCCCeEEEeCchhH
Q 012474 96 PFQDCLAKLISNGDQEEPVTCLI----TDAIWHFAQTVADTLRLPRIVLRTSSIS 146 (463)
Q Consensus 96 ~l~~~l~~l~~~~~~~~~pD~VI----~D~~~~~~~~~A~~~giP~v~~~~~~~~ 146 (463)
.+.+.++..... ..+|.+| +|-..++.+.+|.++++|.+++..++..
T Consensus 98 lIAdsiE~~~~a----~~~Dg~V~i~~CDK~~PG~lMaaarlniPsi~v~gGpm~ 148 (615)
T PRK12448 98 LIADSVEYMVNA----HCADAMVCISNCDKITPGMLMAALRLNIPVVFVSGGPME 148 (615)
T ss_pred HHHHHHHHHhhC----CCcceEEEeccCCCchHHHHHHHHhcCCCEEEEeCCCcC
Confidence 344555555554 6688888 5666687788999999999999887654
No 290
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=39.21 E-value=32 Score=34.29 Aligned_cols=33 Identities=24% Similarity=0.219 Sum_probs=26.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012474 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNF 52 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 52 (463)
|||+++--|. .-+.-|.+|+++||+||++=...
T Consensus 1 ~rVai~GaG~-----AgL~~a~~La~~g~~vt~~ea~~ 33 (485)
T COG3349 1 MRVAIAGAGL-----AGLAAAYELADAGYDVTLYEARD 33 (485)
T ss_pred CeEEEEcccH-----HHHHHHHHHHhCCCceEEEeccC
Confidence 6777776664 45888999999999999997643
No 291
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=39.10 E-value=40 Score=33.70 Aligned_cols=58 Identities=21% Similarity=0.338 Sum_probs=41.0
Q ss_pred hHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCC-ccCHHHHHHHHHHHhccchHHHHHHH
Q 012474 366 STLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLER-KFERREIETAIRRVTVEAEGQEMRER 431 (463)
Q Consensus 366 s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~-~~t~~~l~~~i~~~l~~~~~~~~~~~ 431 (463)
++.||+++|+|++.. ++..-+..|+. .--|...+. .-....+++++-++..| ++++.+
T Consensus 381 v~IEAMa~glPvvAt----~~GGP~EiV~~-~~tG~l~dp~~e~~~~~a~~~~kl~~~---p~l~~~ 439 (495)
T KOG0853|consen 381 VPIEAMACGLPVVAT----NNGGPAEIVVH-GVTGLLIDPGQEAVAELADALLKLRRD---PELWAR 439 (495)
T ss_pred eeHHHHhcCCCEEEe----cCCCceEEEEc-CCcceeeCCchHHHHHHHHHHHHHhcC---HHHHHH
Confidence 789999999999865 44444566666 366776666 22333799999999999 555433
No 292
>PRK05784 phosphoribosylamine--glycine ligase; Provisional
Probab=38.76 E-value=2.6e+02 Score=28.30 Aligned_cols=31 Identities=23% Similarity=0.356 Sum_probs=25.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhC--CCeEEEEeC
Q 012474 15 RRVILFPLPLQGHINPMLQLASILYSK--GFSITIIHT 50 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~ 50 (463)
|||+++..++..| +|++.|.+. |++|.++..
T Consensus 1 mkVLviG~Ggreh-----al~~~l~~s~~g~~v~~~~g 33 (486)
T PRK05784 1 MKVLLVGDGAREH-----ALAEALEKSTKGYKVYALSS 33 (486)
T ss_pred CEEEEECCchhHH-----HHHHHHHhCCCCCEEEEEEC
Confidence 7999998888777 577888776 999888855
No 293
>PRK06904 replicative DNA helicase; Validated
Probab=38.68 E-value=1.1e+02 Score=30.74 Aligned_cols=37 Identities=11% Similarity=0.124 Sum_probs=30.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCCC
Q 012474 16 RVILFPLPLQGHINPMLQLASILYS-KGFSITIIHTNF 52 (463)
Q Consensus 16 ~il~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~ 52 (463)
=+++-.-|+.|-..-.+.+|...+. .|+.|.|++-+.
T Consensus 223 LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEM 260 (472)
T PRK06904 223 LIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEM 260 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccC
Confidence 3666778899999999999998875 599999999863
No 294
>PRK13604 luxD acyl transferase; Provisional
Probab=38.34 E-value=67 Score=30.10 Aligned_cols=37 Identities=24% Similarity=0.334 Sum_probs=30.6
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 012474 13 KGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIH 49 (463)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 49 (463)
++.+.++++.|..++-.-+..+|+.|.++|+.|.-+=
T Consensus 35 ~~~~~vIi~HGf~~~~~~~~~~A~~La~~G~~vLrfD 71 (307)
T PRK13604 35 KKNNTILIASGFARRMDHFAGLAEYLSSNGFHVIRYD 71 (307)
T ss_pred CCCCEEEEeCCCCCChHHHHHHHHHHHHCCCEEEEec
Confidence 4556788888888887779999999999999987664
No 295
>PRK13059 putative lipid kinase; Reviewed
Probab=38.09 E-value=1e+02 Score=28.69 Aligned_cols=29 Identities=10% Similarity=0.045 Sum_probs=22.9
Q ss_pred CCCCcccccccChhhHHHHH---h---hCCceecccc
Q 012474 352 HPAVGGFWTHNGWNSTLESI---C---EGVPMICQPC 382 (463)
Q Consensus 352 ~~~~~~~I~hgG~~s~~eal---~---~GvP~l~~P~ 382 (463)
..++ +|.-||=||+.|++ . .++|+-++|.
T Consensus 56 ~~d~--vi~~GGDGTv~evv~gl~~~~~~~~lgviP~ 90 (295)
T PRK13059 56 SYKY--ILIAGGDGTVDNVVNAMKKLNIDLPIGILPV 90 (295)
T ss_pred CCCE--EEEECCccHHHHHHHHHHhcCCCCcEEEECC
Confidence 3456 99999999988874 2 3589999996
No 296
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=38.02 E-value=80 Score=24.63 Aligned_cols=37 Identities=19% Similarity=0.130 Sum_probs=33.1
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012474 16 RVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNF 52 (463)
Q Consensus 16 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 52 (463)
||++..-++.|-......+++.|+++|.+|.++..+.
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 4788888899999999999999999999999988865
No 297
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=37.86 E-value=58 Score=31.08 Aligned_cols=34 Identities=21% Similarity=0.387 Sum_probs=27.6
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCC-eEEEEeCC
Q 012474 13 KGRRVILFPLPLQGHINPMLQLASILYSKGF-SITIIHTN 51 (463)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh-~Vt~~~~~ 51 (463)
+..||+++-.|+.| ..+|+.|++.|+ +|+++=.+
T Consensus 23 ~~~~VlVvG~GglG-----s~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 23 REKHVLIIGAGALG-----TANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred cCCcEEEECCCHHH-----HHHHHHHHHcCCCeEEEEeCC
Confidence 47889999998876 567899999998 78877664
No 298
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=37.59 E-value=57 Score=32.03 Aligned_cols=41 Identities=17% Similarity=0.192 Sum_probs=33.7
Q ss_pred CCcEEEEEcC--CCccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012474 13 KGRRVILFPL--PLQGHINPMLQLASILYSKGFSITIIHTNFN 53 (463)
Q Consensus 13 ~~~~il~~~~--~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 53 (463)
++|+|+.+.. ||.|-..-.+.||..|+.+|++|.++=.+++
T Consensus 119 ~~~~vIav~n~KGGvGKTTta~nLA~~LA~~G~rVLlIDlDpQ 161 (405)
T PRK13869 119 EHLQVIAVTNFKGGSGKTTTSAHLAQYLALQGYRVLAVDLDPQ 161 (405)
T ss_pred CCceEEEEEcCCCCCCHHHHHHHHHHHHHhcCCceEEEcCCCC
Confidence 4667766665 5779999999999999999999999866544
No 299
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=37.27 E-value=1.7e+02 Score=25.33 Aligned_cols=120 Identities=12% Similarity=0.117 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHHhcCCCceEEEEcCCCCCCCccCCCCchhHHHHhcCCCceeeccChhhhh-cCCCCcccccccChhhHH
Q 012474 290 NVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIVKWAPQQEVL-AHPAVGGFWTHNGWNSTL 368 (463)
Q Consensus 290 ~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpq~~lL-~~~~~~~~I~hgG~~s~~ 368 (463)
...+-..+.+.+.+.+..+++..+. ..-+.+.|.++.++ .+| -||++ .=.++|..+..
T Consensus 64 r~~~d~~l~~~l~~~~~dlvvLAGy--------MrIL~~~fl~~~~g-----------rIlNIHPSL--LP~f~G~h~~~ 122 (200)
T COG0299 64 REAFDRALVEALDEYGPDLVVLAGY--------MRILGPEFLSRFEG-----------RILNIHPSL--LPAFPGLHAHE 122 (200)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcch--------HHHcCHHHHHHhhc-----------ceEecCccc--ccCCCCchHHH
Confidence 3445667999999988887776553 22245555443332 233 38899 99999999999
Q ss_pred HHHhhCCceeccccc-c-chhhhHHHHHHHhhceeecCCccCHHHHHHHHHHHhccchHHHHHHHHHHHHH
Q 012474 369 ESICEGVPMICQPCF-G-DQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVEAEGQEMRERIMHLKE 437 (463)
Q Consensus 369 eal~~GvP~l~~P~~-~-DQ~~na~rv~~~~G~G~~l~~~~t~~~l~~~i~~~l~~~~~~~~~~~a~~~~~ 437 (463)
+|+.+|+..-++-.. . +..+-+-.+.+ ..+-+...-|.|+|.+.|.+.=. .-|-+..+.+.+
T Consensus 123 ~A~~aG~k~sG~TVH~V~e~vD~GpII~Q---~~Vpv~~~Dt~etl~~RV~~~Eh----~lyp~~v~~~~~ 186 (200)
T COG0299 123 QALEAGVKVSGCTVHFVTEGVDTGPIIAQ---AAVPVLPGDTAETLEARVLEQEH----RLYPLAVKLLAE 186 (200)
T ss_pred HHHHcCCCccCcEEEEEccCCCCCCeEEE---EeeeecCCCCHHHHHHHHHHHHH----HHHHHHHHHHHh
Confidence 999999998766643 2 33333322222 11111223477888887765332 345544444443
No 300
>cd07025 Peptidase_S66 LD-Carboxypeptidase, a serine protease, includes microcin C7 self immunity protein. LD-carboxypeptidase (Muramoyltetrapeptide carboxypeptidase; EC 3.4.17.13; Merops family S66; initially described as Carboxypeptidase II) family also includes the microcin c7 self-immunity protein (MccF) as well as uncharacterized proteins including hypothetical proteins. LD-carboxypeptidase hydrolyzes the amide bond that links the dibasic amino acids to C-terminal D-amino acids. The physiological substrates of LD-carboxypeptidase are tetrapeptide fragments (such as UDP-MurNAc-tetrapeptides) that are produced when bacterial cell walls are degraded; they contain an L-configured residue (L-lysine or meso-diaminopimelic acid residue) as the penultimate residue and D-alanine as the ultimate residue. A possible role of LD-carboxypeptidase is in peptidoglycan recycling whereby the resulting tripeptide (precursor for murein synthesis) can be reconverted into peptidoglycan by attachment o
Probab=37.25 E-value=76 Score=29.36 Aligned_cols=75 Identities=12% Similarity=0.256 Sum_probs=53.4
Q ss_pred cCCHHHHHHHHHHHhcCCCceEEEEcCCCCCCCccCCCCchhHHHHhcCCCceeeccChhhhhcCCCCcccccccChhhH
Q 012474 288 VVNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIVKWAPQQEVLAHPAVGGFWTHNGWNST 367 (463)
Q Consensus 288 ~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~I~hgG~~s~ 367 (463)
..+.+..+.+.+|+.....+.||.+.++. ... ++.++++...+-+++.. ||-+.-..++
T Consensus 45 ~s~~~Ra~dL~~a~~d~~i~aI~~~rGG~-----------ga~--------rlL~~ld~~~~~~~pK~--~iGySDiTaL 103 (282)
T cd07025 45 GTDEERAADLNAAFADPEIKAIWCARGGY-----------GAN--------RLLPYLDYDLIRANPKI--FVGYSDITAL 103 (282)
T ss_pred CCHHHHHHHHHHHhhCCCCCEEEEcCCcC-----------CHH--------HhhhhCCHHHHhhCCeE--EEEecHHHHH
Confidence 34666788899999999999999988764 112 46666666666677777 8866666666
Q ss_pred HHHHhh--CCceeccccc
Q 012474 368 LESICE--GVPMICQPCF 383 (463)
Q Consensus 368 ~eal~~--GvP~l~~P~~ 383 (463)
.-+++. |++.+-=|..
T Consensus 104 ~~~l~~~~g~~t~hGp~~ 121 (282)
T cd07025 104 HLALYAKTGLVTFHGPML 121 (282)
T ss_pred HHHHHHhcCceEEECccc
Confidence 666653 7777666654
No 301
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=37.15 E-value=1.5e+02 Score=28.28 Aligned_cols=115 Identities=8% Similarity=0.031 Sum_probs=63.8
Q ss_pred CcEEEEEcCCCc--cCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCC-CCceEEeCCCCCCCccccc--ccHHHHHHH
Q 012474 14 GRRVILFPLPLQ--GHINPMLQLASILYSKGFSITIIHTNFNSPNPSNY-PHFSFNSISESLWESEVST--ENAISLLTV 88 (463)
Q Consensus 14 ~~~il~~~~~~~--GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~--~~~~~~~~~ 88 (463)
.+||++++.|+. |=-+....+.+.+...|.+|.-+-..+. ...... -.++...+.+-...+.... ....+..
T Consensus 2 ~kkIaIlTSGGdaPGmNa~Iravvr~a~~~g~eV~Gi~~Gy~-GL~~~~i~~l~~~~v~~~~~~GGT~lgssR~~~~~-- 78 (347)
T COG0205 2 MKKIAILTSGGDAPGMNAVIRAVVRTAIKEGLEVFGIYNGYL-GLLEGDIKPLTREDVDDLINRGGTFLGSARFPEFK-- 78 (347)
T ss_pred CceEEEEccCCCCccHHHHHHHHHHHHHHcCCEEEEEecchh-hhcCCcceeccccchhHHHhcCCeEEeeCCCCCcc--
Confidence 578999999865 7777899999999999999988776432 121110 0111111111001111000 0000000
Q ss_pred HHHhcCchHHHHHHHHHhCCCCCCCceEEE---eCCchhhHHHHHHHcCCCeEEE
Q 012474 89 LNDKCVVPFQDCLAKLISNGDQEEPVTCLI---TDAIWHFAQTVADTLRLPRIVL 140 (463)
Q Consensus 89 ~~~~~~~~l~~~l~~l~~~~~~~~~pD~VI---~D~~~~~~~~~A~~~giP~v~~ 140 (463)
..+.....++.+.+ .+.|.+| -|.....+..++++.++|+|.+
T Consensus 79 ----~~e~~~~~~~~l~~-----~gId~LvvIGGDgS~~gA~~Lae~~~i~vVGv 124 (347)
T COG0205 79 ----TEEGRKVAAENLKK-----LGIDALVVIGGDGSYTGAALLAEEGGIPVVGV 124 (347)
T ss_pred ----cHHHHHHHHHHHHH-----cCCCEEEEECCCChHHHHHHHHHhcCCcEEec
Confidence 00111134555555 5677766 4666677889999999999884
No 302
>TIGR03646 YtoQ_fam YtoQ family protein. Members of this family are uncharacterized proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=36.98 E-value=2.2e+02 Score=22.80 Aligned_cols=129 Identities=12% Similarity=0.135 Sum_probs=65.5
Q ss_pred EEEEecCCcccCCHHHHHHHHHHHhcCCCceEEEEcCCCCCCCccCCCCchhHHHHhcCCCce------eeccChhhhhc
Q 012474 278 VMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHI------VKWAPQQEVLA 351 (463)
Q Consensus 278 ~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~vpq~~lL~ 351 (463)
.||+| | -...+..+.|.++.++.+..+.++.+- ++++..+.....+....+++++- +.-+-...++.
T Consensus 2 ~VYLs-G---EIHtdWRe~I~~ga~~~~L~v~F~~pv---tdH~aSD~~G~~iLG~e~~~fw~D~k~a~iNaiRT~~li~ 74 (144)
T TIGR03646 2 TVYLA-G---EIHTDWREEIKEGAKSKNLPIVFSGPV---TDHEASDNIGEDILGKQPSNFWRDDAAASINNIRTRKLIE 74 (144)
T ss_pred eEEEc-C---cccchHHHHHHHHHHHcCCCeEEecCC---CCCcchhhhhHHHhCCCCccccccccccchhhHHHHHHHh
Confidence 36665 2 234456677888888666665554321 11111111111111111111111 12233456778
Q ss_pred CCCCcccccccC-----hhhHHHH---HhhCCceeccccccchhhhHHHHHHHhhceeecCCccCHHHHHHHHHHHhc
Q 012474 352 HPAVGGFWTHNG-----WNSTLES---ICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTV 421 (463)
Q Consensus 352 ~~~~~~~I~hgG-----~~s~~ea---l~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~t~~~l~~~i~~~l~ 421 (463)
.+++ +|-.=| ||+.++| ++.|+|+|++---.-|+- -.-|.. .+... --|++++.+.++.+++
T Consensus 75 ~aDv--vVvrFGekYKQWNaAfDAg~aaAlgKplI~lh~~~~~Hp-LKEvda---aA~av--aetp~Qvv~iL~Yv~~ 144 (144)
T TIGR03646 75 KADV--VIALFGEKYKQWNAAFDAGYAAALGKPLIILRPEELIHP-LKEVDN---KAQAV--VETPEQAIETLKYILE 144 (144)
T ss_pred hCCE--EEEEechHHHHHHHHhhHHHHHHcCCCeEEecchhcccc-HHHHhH---HHHHH--hcCHHHHHHHHHHhhC
Confidence 8888 887777 7888776 788999988763221111 011111 11100 2578888888887763
No 303
>PLN00016 RNA-binding protein; Provisional
Probab=36.95 E-value=43 Score=32.44 Aligned_cols=36 Identities=19% Similarity=0.279 Sum_probs=25.1
Q ss_pred CcEEEEEcC--CCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012474 14 GRRVILFPL--PLQGHINPMLQLASILYSKGFSITIIHTN 51 (463)
Q Consensus 14 ~~~il~~~~--~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (463)
.++|+++.. |+.|.+ -..|+++|.++||+|+.++-.
T Consensus 52 ~~~VLVt~~~~GatG~i--G~~lv~~L~~~G~~V~~l~R~ 89 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFI--GFYLAKELVKAGHEVTLFTRG 89 (378)
T ss_pred cceEEEEeccCCCceeE--hHHHHHHHHHCCCEEEEEecC
Confidence 467777611 333443 356789999999999999864
No 304
>PRK06270 homoserine dehydrogenase; Provisional
Probab=36.90 E-value=2.6e+02 Score=26.72 Aligned_cols=58 Identities=10% Similarity=0.039 Sum_probs=35.9
Q ss_pred ChhhhhcCCCCccccc------ccC---hhhHHHHHhhCCceec---cccccchhhhHHHHHHHhhceeec
Q 012474 345 PQQEVLAHPAVGGFWT------HNG---WNSTLESICEGVPMIC---QPCFGDQLVNARYVSHVWRVGLHL 403 (463)
Q Consensus 345 pq~~lL~~~~~~~~I~------hgG---~~s~~eal~~GvP~l~---~P~~~DQ~~na~rv~~~~G~G~~l 403 (463)
...++|..++...||- |+| ..-+.+||.+|+++|+ -|+...-..-.+..+++ |.....
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~-g~~~~~ 149 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKN-GVRFRY 149 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHc-CCEEEE
Confidence 4466776555444665 543 4566899999999999 47654333334444553 666554
No 305
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=36.84 E-value=69 Score=29.83 Aligned_cols=39 Identities=10% Similarity=0.146 Sum_probs=30.3
Q ss_pred CCCcEEEEEcCCCcc-C---HHHHHHHHHHHHhCCCeEEEEeC
Q 012474 12 KKGRRVILFPLPLQG-H---INPMLQLASILYSKGFSITIIHT 50 (463)
Q Consensus 12 ~~~~~il~~~~~~~G-H---~~p~l~La~~L~~rGh~Vt~~~~ 50 (463)
|+++||+++..|..+ | +.....++++|.+.||+|.++..
T Consensus 1 ~~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~g~~~~~~~~ 43 (296)
T PRK14569 1 MKNEKIVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDA 43 (296)
T ss_pred CCCcEEEEEeCCCCCchHhHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 357899999987654 2 34577899999999999988754
No 306
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=36.67 E-value=73 Score=25.64 Aligned_cols=36 Identities=17% Similarity=0.205 Sum_probs=28.7
Q ss_pred cEEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012474 15 RRVILFPL-PLQGHINPMLQLASILYSKGFSITIIHT 50 (463)
Q Consensus 15 ~~il~~~~-~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (463)
+|+.++-+ +..--+.|..-++...++.|++|+++.+
T Consensus 3 ~k~~IIl~SG~~dk~~~a~iias~A~A~G~EV~VF~T 39 (137)
T COG2210 3 KKLGIILASGTLDKAYAALIIASGAAAMGYEVTVFFT 39 (137)
T ss_pred ceEEEEEeCCCHHHHHHHHHHHHHHHHcCCeEEEEEe
Confidence 44444444 4457899999999999999999999888
No 307
>PRK02399 hypothetical protein; Provisional
Probab=36.59 E-value=1.5e+02 Score=28.80 Aligned_cols=92 Identities=16% Similarity=0.160 Sum_probs=54.7
Q ss_pred CCeEEEEec-CCcccCCHHHHHHHHHHHhcCCCceEEEEcCCCCCCCccCCCCchhHHHHhcCCCce---eeccChhhhh
Q 012474 275 AKSVMYVSF-GSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHI---VKWAPQQEVL 350 (463)
Q Consensus 275 ~~~~v~vs~-Gs~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~vpq~~lL 350 (463)
+||.|-+|+ |... .-...+.+.|++.++.+++....+. ...-.|++-+...+ .+...+.. -
T Consensus 185 ~kp~Ig~TmfGvTt----p~v~~~~~~Le~~GyEvlVFHATG~----------GGraME~Li~~G~~~gVlDlTttEv-~ 249 (406)
T PRK02399 185 DKPLIGLTMFGVTT----PCVQAAREELEARGYEVLVFHATGT----------GGRAMEKLIDSGLIAGVLDLTTTEV-C 249 (406)
T ss_pred CCceEEEecCCCcH----HHHHHHHHHHHhCCCeEEEEcCCCC----------chHHHHHHHHcCCceEEEEcchHHH-H
Confidence 577877775 6544 4677888899999998877654332 12222333333333 35544421 0
Q ss_pred cCCCCcccccccChhhHHHHHhhCCceeccccc
Q 012474 351 AHPAVGGFWTHNGWNSTLESICEGVPMICQPCF 383 (463)
Q Consensus 351 ~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~ 383 (463)
.--+++ |..+|-.=..-|...|+|+|+.|-.
T Consensus 250 -d~l~GG-v~sagp~Rl~Aa~~~gIP~Vvs~Ga 280 (406)
T PRK02399 250 -DELFGG-VLAAGPDRLEAAARTGIPQVVSPGA 280 (406)
T ss_pred -HHHhCc-CccCCccHHHHHHHcCCCEEecCCc
Confidence 001111 3345677788889999999988853
No 308
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=36.56 E-value=3.6e+02 Score=25.14 Aligned_cols=41 Identities=20% Similarity=0.267 Sum_probs=33.5
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012474 13 KGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFN 53 (463)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 53 (463)
+...|++.-.++.|-..-+..|+..|.++|+.|.++..+..
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~ 73 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPS 73 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 45556666667889999999999999999999999987643
No 309
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=36.55 E-value=70 Score=27.19 Aligned_cols=39 Identities=26% Similarity=0.474 Sum_probs=30.5
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012474 12 KKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHT 50 (463)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (463)
.++..++++..+|.|-..=..++++++.++|+.|.|++.
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~ 83 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITA 83 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEH
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeec
Confidence 446678999888999888899999999999999998876
No 310
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=36.49 E-value=2.3e+02 Score=23.01 Aligned_cols=29 Identities=14% Similarity=0.308 Sum_probs=22.7
Q ss_pred CCCcccccccC------hhhHHHHHhhCCceeccccc
Q 012474 353 PAVGGFWTHNG------WNSTLESICEGVPMICQPCF 383 (463)
Q Consensus 353 ~~~~~~I~hgG------~~s~~eal~~GvP~l~~P~~ 383 (463)
+.+ +++|+| .+.+.+|...++|+|++.-.
T Consensus 60 ~~v--~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~~ 94 (155)
T cd07035 60 PGV--VLVTSGPGLTNAVTGLANAYLDSIPLLVITGQ 94 (155)
T ss_pred CEE--EEEcCCCcHHHHHHHHHHHHhhCCCEEEEeCC
Confidence 445 888866 35788999999999999743
No 311
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=36.45 E-value=81 Score=26.84 Aligned_cols=33 Identities=21% Similarity=0.334 Sum_probs=24.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCe--EEEEeC
Q 012474 15 RRVILFPLPLQGHINPMLQLASILYSKGFS--ITIIHT 50 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~--Vt~~~~ 50 (463)
|||+|+..++. ..+..+.++|.+++|+ |.++.+
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~~~~~~iv~Vit 35 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKARGHNVEIVLVIT 35 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTTSSEEEEEEEEE
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhCCCCceEEEEec
Confidence 79999977664 4567778899999997 555444
No 312
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=36.36 E-value=52 Score=30.97 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=25.2
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012474 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNF 52 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 52 (463)
|||+|+..+.. .++..++|.++||+|..+.+.+
T Consensus 1 mkIvf~Gs~~~-----a~~~L~~L~~~~~~i~~Vvt~p 33 (313)
T TIGR00460 1 LRIVFFGTPTF-----SLPVLEELREDNFEVVGVVTQP 33 (313)
T ss_pred CEEEEECCCHH-----HHHHHHHHHhCCCcEEEEEcCC
Confidence 78999866653 3777889999999998766643
No 313
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=36.03 E-value=41 Score=31.05 Aligned_cols=29 Identities=10% Similarity=0.109 Sum_probs=23.2
Q ss_pred CCCCcccccccChhhHHHHHh---hCCceecccc
Q 012474 352 HPAVGGFWTHNGWNSTLESIC---EGVPMICQPC 382 (463)
Q Consensus 352 ~~~~~~~I~hgG~~s~~eal~---~GvP~l~~P~ 382 (463)
.+++ +|.-||-||+.+++. .++|++++|.
T Consensus 57 ~~d~--vi~iGGDGTlL~a~~~~~~~~pi~gIn~ 88 (277)
T PRK03708 57 DVDF--IIAIGGDGTILRIEHKTKKDIPILGINM 88 (277)
T ss_pred CCCE--EEEEeCcHHHHHHHHhcCCCCeEEEEeC
Confidence 4566 999999999999974 4568888874
No 314
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=35.87 E-value=50 Score=32.21 Aligned_cols=39 Identities=15% Similarity=0.151 Sum_probs=31.2
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012474 13 KGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNF 52 (463)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 52 (463)
+++||++.-.|+ +...-...+.++|.++|++|.++.++.
T Consensus 2 ~~k~IllgiTGS-iaa~~~~~ll~~L~~~g~~V~vv~T~~ 40 (390)
T TIGR00521 2 ENKKILLGVTGG-IAAYKTVELVRELVRQGAEVKVIMTEA 40 (390)
T ss_pred CCCEEEEEEeCH-HHHHHHHHHHHHHHhCCCEEEEEECHh
Confidence 456787777776 445668999999999999999998853
No 315
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=35.66 E-value=79 Score=25.48 Aligned_cols=38 Identities=13% Similarity=0.128 Sum_probs=34.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012474 14 GRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (463)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (463)
+.+|++-+.++-+|-.----++..|.+.|++|..+...
T Consensus 1 ~~~vvigtv~~D~HdiGk~iv~~~l~~~GfeVi~LG~~ 38 (134)
T TIGR01501 1 KKTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNLGVL 38 (134)
T ss_pred CCeEEEEEecCChhhHhHHHHHHHHHHCCCEEEECCCC
Confidence 35889999999999999999999999999999998874
No 316
>PRK13973 thymidylate kinase; Provisional
Probab=35.51 E-value=1.7e+02 Score=25.63 Aligned_cols=39 Identities=18% Similarity=0.240 Sum_probs=32.4
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012474 13 KGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (463)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (463)
+++=|+|--..+.|-.--+-.|++.|.++|+.|.+...+
T Consensus 2 ~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p 40 (213)
T PRK13973 2 RGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREP 40 (213)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 456677777778899999999999999999998777654
No 317
>PF01372 Melittin: Melittin; InterPro: IPR002116 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an Arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Api m 3. Melittin is the principal protein component of the venom of the honeybee, Apis mellifera. It inhibits protein kinase C, Ca2+/calmodulin-dependent protein kinase II, myosin light chain kinase and Na+/K+-ATPase (synaptosomal membrane) and is a cell membrane lytic factor. Melittin is a small peptide with no disulphide bridge; the N-terminal part of the molecule is predominantly hydrophobic and the C-terminal part is hydrophilic and strongly basic. The molecular mechanisms underlying the various effects of melittin on membranes have not been completely defined and much of the evidence indicates that different molecular mechanisms may underlie different actions of the peptide []. Extensive work with melittin has shown that the venom has multiple effects, probably, as a result of its interaction with negatively changed phospholipids. It inhibits well known transport pumps such as the Na+-K+-ATPase and the H+-K+-ATPase. Melittin increases the permeability of cell membranes to ions, particularly Na+ and indirectly Ca2+, because of the Na+-Ca2+-exchange. This effect results in marked morphological and functional changes, particularly in excitable tissues such as cardiac myocytes. In some other tissues, e.g., cornea, not only Na+ but Cl- permeability is also increased by melittin. Similar effects to melittin on H+-K+-ATPase have been found with the synthetic amphipathic polypeptide Trp-3 []. The study of melittin in model membranes has been useful for the development of methodology for determination of membrane protein structures. A molecular dynamics simulation of melittin in a hydrated dipalmitoylphosphatidylcholine (DPPC) bilayer was carried out. The effect of melittin on the surrounding membrane was localised to its immediate vicinity, and its asymmetry with respect to the two layers may be a result of the fact that it is not fully transmembranal. Melittin's hydrophilic C terminus anchors it at the extracellular interface, leaving the N terminus "loose" in the lower layer of the membrane [].; GO: 0004860 protein kinase inhibitor activity, 0005576 extracellular region; PDB: 3QRX_B 2MLT_A 1BH1_A.
Probab=35.49 E-value=7.2 Score=20.63 Aligned_cols=17 Identities=24% Similarity=0.593 Sum_probs=13.2
Q ss_pred ChhhHHHHHhhCCceec
Q 012474 363 GWNSTLESICEGVPMIC 379 (463)
Q Consensus 363 G~~s~~eal~~GvP~l~ 379 (463)
|.|++.-.|+.|.|.++
T Consensus 1 gIGa~Lkvla~~LP~lI 17 (26)
T PF01372_consen 1 GIGAILKVLATGLPTLI 17 (26)
T ss_dssp -HHHHHHHHHTHHHHHH
T ss_pred ChhHHHHHHHhcChHHH
Confidence 67888889998888764
No 318
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=35.39 E-value=42 Score=28.29 Aligned_cols=43 Identities=16% Similarity=0.212 Sum_probs=28.1
Q ss_pred CCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeC
Q 012474 22 LPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSNYPHFSFNSI 68 (463)
Q Consensus 22 ~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~g~~~~~~ 68 (463)
+|+.|++- ..++++|.++||+|+.++-....... ..+++....
T Consensus 4 ~GatG~vG--~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~ 46 (183)
T PF13460_consen 4 FGATGFVG--RALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQG 46 (183)
T ss_dssp ETTTSHHH--HHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEES
T ss_pred ECCCChHH--HHHHHHHHHCCCEEEEEecCchhccc--cccccccee
Confidence 35556554 46899999999999999975331111 245666543
No 319
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=35.08 E-value=55 Score=30.67 Aligned_cols=29 Identities=14% Similarity=0.226 Sum_probs=23.7
Q ss_pred cCCCCcccccccChhhHHHHHhh----CCceeccc
Q 012474 351 AHPAVGGFWTHNGWNSTLESICE----GVPMICQP 381 (463)
Q Consensus 351 ~~~~~~~~I~hgG~~s~~eal~~----GvP~l~~P 381 (463)
..+++ +|+=||=||+..|... ++|++.+-
T Consensus 67 ~~~Dl--vi~iGGDGTlL~aar~~~~~~iPilGIN 99 (305)
T PRK02649 67 SSMKF--AIVLGGDGTVLSAARQLAPCGIPLLTIN 99 (305)
T ss_pred cCcCE--EEEEeCcHHHHHHHHHhcCCCCcEEEEe
Confidence 34666 9999999999999774 78888775
No 320
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=34.89 E-value=5.1e+02 Score=27.81 Aligned_cols=41 Identities=10% Similarity=0.176 Sum_probs=31.9
Q ss_pred CCcEEEEEcCC--CccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012474 13 KGRRVILFPLP--LQGHINPMLQLASILYSKGFSITIIHTNFN 53 (463)
Q Consensus 13 ~~~~il~~~~~--~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 53 (463)
++.|++.++.. +-|-..-...||..|+..|++|.++-.+..
T Consensus 529 ~~~kvI~vtS~~~g~GKTtva~nLA~~la~~G~rVLlID~D~r 571 (726)
T PRK09841 529 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADLR 571 (726)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 34566666654 558888899999999999999999977543
No 321
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=34.85 E-value=65 Score=29.01 Aligned_cols=37 Identities=24% Similarity=0.124 Sum_probs=29.6
Q ss_pred cEEEEEcC--CCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012474 15 RRVILFPL--PLQGHINPMLQLASILYSKGFSITIIHTN 51 (463)
Q Consensus 15 ~~il~~~~--~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (463)
|+++.+.. ||.|-..-.-.||..|++.|+.|..+=-+
T Consensus 1 M~~iai~s~kGGvG~TTltAnLA~aL~~~G~~VlaID~d 39 (243)
T PF06564_consen 1 MKVIAIVSPKGGVGKTTLTANLAWALARLGESVLAIDLD 39 (243)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 45555544 46799999999999999999999998654
No 322
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=34.84 E-value=80 Score=29.43 Aligned_cols=41 Identities=17% Similarity=0.115 Sum_probs=31.9
Q ss_pred CCcEEE-EEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012474 13 KGRRVI-LFPLPLQGHINPMLQLASILYSKGFSITIIHTNFN 53 (463)
Q Consensus 13 ~~~~il-~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 53 (463)
.+||++ |..=||-|-..-...||-.|+++|++|.++-.++.
T Consensus 2 ~~~~~iai~~KGGvGKTt~~~nLa~~la~~g~kVLliD~D~q 43 (295)
T PRK13234 2 SKLRQIAFYGKGGIGKSTTSQNTLAALVEMGQKILIVGCDPK 43 (295)
T ss_pred CcceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEecccc
Confidence 455555 44445668899999999999999999999976554
No 323
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=34.83 E-value=1.4e+02 Score=27.67 Aligned_cols=29 Identities=14% Similarity=0.166 Sum_probs=21.0
Q ss_pred CCCCcccccccChhhHHHHHhh-----CCcee-cccc
Q 012474 352 HPAVGGFWTHNGWNSTLESICE-----GVPMI-CQPC 382 (463)
Q Consensus 352 ~~~~~~~I~hgG~~s~~eal~~-----GvP~l-~~P~ 382 (463)
.+++ +|.-||=||+.|++.. ..|.+ ++|.
T Consensus 57 ~~d~--ivv~GGDGTl~~v~~~l~~~~~~~~lgiiP~ 91 (293)
T TIGR00147 57 GVDT--VIAGGGDGTINEVVNALIQLDDIPALGILPL 91 (293)
T ss_pred CCCE--EEEECCCChHHHHHHHHhcCCCCCcEEEEcC
Confidence 3456 9999999999997643 34444 4895
No 324
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=34.81 E-value=57 Score=28.37 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=27.0
Q ss_pred cCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 012474 10 QQKKGRRVILFPLPLQGHINPMLQLASILYSKGFSITII 48 (463)
Q Consensus 10 ~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~ 48 (463)
.+.+.++++++-+|. --..+|+.|.+.||+|++.
T Consensus 24 ~~l~gk~v~I~G~G~-----vG~~~A~~L~~~G~~Vvv~ 57 (200)
T cd01075 24 DSLEGKTVAVQGLGK-----VGYKLAEHLLEEGAKLIVA 57 (200)
T ss_pred CCCCCCEEEEECCCH-----HHHHHHHHHHHCCCEEEEE
Confidence 456678999988864 4467899999999999954
No 325
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=34.58 E-value=55 Score=30.28 Aligned_cols=32 Identities=19% Similarity=0.382 Sum_probs=26.4
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012474 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (463)
+||.|+-.|..| .+.|+.|+++||+|++..-.
T Consensus 1 ~kIafIGLG~MG-----~pmA~~L~~aG~~v~v~~r~ 32 (286)
T COG2084 1 MKIAFIGLGIMG-----SPMAANLLKAGHEVTVYNRT 32 (286)
T ss_pred CeEEEEcCchhh-----HHHHHHHHHCCCEEEEEeCC
Confidence 578888777655 68899999999999998764
No 326
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=34.49 E-value=1.6e+02 Score=25.59 Aligned_cols=34 Identities=6% Similarity=0.152 Sum_probs=23.3
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCC--CeEEEEeCC
Q 012474 15 RRVILFPLPLQGHINPMLQLASILYSKG--FSITIIHTN 51 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rG--h~Vt~~~~~ 51 (463)
|||+|+..+..+= +.+|.+.+.+.+ ++|.++.++
T Consensus 2 ~ki~vl~sg~gs~---~~~ll~~~~~~~~~~~I~~vvs~ 37 (200)
T PRK05647 2 KRIVVLASGNGSN---LQAIIDACAAGQLPAEIVAVISD 37 (200)
T ss_pred ceEEEEEcCCChh---HHHHHHHHHcCCCCcEEEEEEec
Confidence 7899999987333 346667777654 778876553
No 327
>cd00672 CysRS_core catalytic core domain of cysteinyl tRNA synthetase. Cysteinyl tRNA synthetase (CysRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=34.48 E-value=2.2e+02 Score=25.03 Aligned_cols=93 Identities=11% Similarity=0.016 Sum_probs=52.2
Q ss_pred ccCHHHHH---HHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCcccccccHHHHHHHHHHhcCchHHHHH
Q 012474 25 QGHINPML---QLASILYSKGFSITIIHTNFNSPNPSNYPHFSFNSISESLWESEVSTENAISLLTVLNDKCVVPFQDCL 101 (463)
Q Consensus 25 ~GH~~p~l---~La~~L~~rGh~Vt~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 101 (463)
.||+.+++ -+++-|..+|++|.|++.-........ -.. .....++.++. +.....+.+.+
T Consensus 36 iGH~r~~v~~Dvl~R~lr~~G~~V~~~~g~dd~g~ki~-----~~A--------~~~g~~p~e~~----~~~~~~f~~~~ 98 (213)
T cd00672 36 IGHARTYVVFDVLRRYLEDLGYKVRYVQNITDIDDKII-----KRA--------REEGLSWKEVA----DYYTKEFFEDM 98 (213)
T ss_pred cccchhHHHHHHHHHHHHhcCCeeEEEeecCCCCCHHH-----HHH--------HHcCCCHHHHH----HHHHHHHHHHH
Confidence 48987654 466777778999999988433322100 000 00011222222 22223344455
Q ss_pred HHHHhCCCCCCCceEEEeCCchhhHHHHHHHcCCCeEE
Q 012474 102 AKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIV 139 (463)
Q Consensus 102 ~~l~~~~~~~~~pD~VI~D~~~~~~~~~A~~~giP~v~ 139 (463)
+++-- ..||..+.-+..-|++.+.+.+|-|.=+
T Consensus 99 ~~l~i-----~~~d~~~rtWh~ec~am~~~~lg~~~di 131 (213)
T cd00672 99 KALNV-----LPPDVVPRVWHIECSAMAMKYLGETFDI 131 (213)
T ss_pred HHcCC-----CCCCcceeehhHHHHHHHHHHcCCCccE
Confidence 55542 2347777777778999999999976644
No 328
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=34.46 E-value=2.9e+02 Score=23.81 Aligned_cols=34 Identities=9% Similarity=0.209 Sum_probs=22.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCC--eEEEEeCC
Q 012474 15 RRVILFPLPLQGHINPMLQLASILYSKGF--SITIIHTN 51 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh--~Vt~~~~~ 51 (463)
|||+++..+..+- +..+.+.+.+.++ +|.++.++
T Consensus 1 ~riail~sg~gs~---~~~ll~~~~~~~l~~~I~~vi~~ 36 (190)
T TIGR00639 1 KRIVVLISGNGSN---LQAIIDACKEGKIPASVVLVISN 36 (190)
T ss_pred CeEEEEEcCCChh---HHHHHHHHHcCCCCceEEEEEEC
Confidence 6889988877443 4466777777655 67765554
No 329
>PLN02240 UDP-glucose 4-epimerase
Probab=34.30 E-value=65 Score=30.66 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012474 13 KGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHT 50 (463)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (463)
..++|++. |+.|.+ -..|++.|.++||+|+.+..
T Consensus 4 ~~~~vlIt--GatG~i--G~~l~~~L~~~g~~V~~~~~ 37 (352)
T PLN02240 4 MGRTILVT--GGAGYI--GSHTVLQLLLAGYKVVVIDN 37 (352)
T ss_pred CCCEEEEE--CCCChH--HHHHHHHHHHCCCEEEEEeC
Confidence 34566653 455665 45678999999999998864
No 330
>PRK04296 thymidine kinase; Provisional
Probab=34.23 E-value=2.1e+02 Score=24.45 Aligned_cols=35 Identities=14% Similarity=0.195 Sum_probs=29.6
Q ss_pred EEEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012474 16 RVILFPLP-LQGHINPMLQLASILYSKGFSITIIHT 50 (463)
Q Consensus 16 ~il~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (463)
.|.+++.+ +.|=..-++.++.++..+|..|.++.+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 35666666 889999999999999999999998855
No 331
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=34.18 E-value=54 Score=27.81 Aligned_cols=35 Identities=11% Similarity=0.034 Sum_probs=25.8
Q ss_pred EEEEcCCCccCHHH-HHHHHHHHHh-CCCeEEEEeCCC
Q 012474 17 VILFPLPLQGHINP-MLQLASILYS-KGFSITIIHTNF 52 (463)
Q Consensus 17 il~~~~~~~GH~~p-~l~La~~L~~-rGh~Vt~~~~~~ 52 (463)
|++.-.|+ ||... ...+.++|.+ +||+|.++.++.
T Consensus 2 i~~gitGs-g~~l~e~v~~l~~L~~~~g~eV~vv~S~~ 38 (174)
T TIGR02699 2 IAWGITGS-GDKLPETYSIMKDVKNRYGDEIDVFLSKA 38 (174)
T ss_pred EEEEEEcc-HHHHHHHHHHHHHHHHhcCCEEEEEECHh
Confidence 33333343 78866 8899999985 599999999864
No 332
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=34.10 E-value=3.6e+02 Score=27.89 Aligned_cols=116 Identities=18% Similarity=0.210 Sum_probs=0.0
Q ss_pred cccccCCCCeEEEEecCCcccCCHHHHHHHHHHHhcCCCceEEEEcCCCCCCCccCCCCchhHHHHhcCCCceeeccChh
Q 012474 268 SWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIVKWAPQQ 347 (463)
Q Consensus 268 ~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpq~ 347 (463)
+|.-...++.++++++|+... ......+.|.+.+..+-++-.-- .+++.+++ -.
T Consensus 494 k~~i~~~G~~vail~~G~~~~----~al~vae~L~~~Gi~~TVvd~rf-------vkPlD~~l---------------l~ 547 (627)
T COG1154 494 KGELLKEGEKVAILAFGTMLP----EALKVAEKLNAYGISVTVVDPRF-------VKPLDEAL---------------LL 547 (627)
T ss_pred ceEEEecCCcEEEEecchhhH----HHHHHHHHHHhcCCCcEEEcCee-------cCCCCHHH---------------HH
Q ss_pred hhhcCCCCccccc------ccChhhHHHH--HhhC--Cceecccc---ccchhhhHHHHHHHhhceeecCCccCHHHHHH
Q 012474 348 EVLAHPAVGGFWT------HNGWNSTLES--ICEG--VPMICQPC---FGDQLVNARYVSHVWRVGLHLERKFERREIET 414 (463)
Q Consensus 348 ~lL~~~~~~~~I~------hgG~~s~~ea--l~~G--vP~l~~P~---~~DQ~~na~rv~~~~G~G~~l~~~~t~~~l~~ 414 (463)
.+..+-++ +|| +||.||-.-- -.+| +|++-+.+ +-||..-.....+. .++++.|.+
T Consensus 548 ~La~~h~~--~vtlEe~~~~GG~Gs~v~efl~~~~~~~~v~~lglpd~fi~hg~~~el~~~~---------gLd~~~i~~ 616 (627)
T COG1154 548 ELAKSHDL--VVTLEENVVDGGFGSAVLEFLAAHGILVPVLNLGLPDEFIDHGSPEELLAEL---------GLDAEGIAR 616 (627)
T ss_pred HHHhhcCe--EEEEecCcccccHHHHHHHHHHhcCCCCceEEecCChHhhccCCHHHHHHHc---------CCCHHHHHH
Q ss_pred HHHHHh
Q 012474 415 AIRRVT 420 (463)
Q Consensus 415 ~i~~~l 420 (463)
.|...+
T Consensus 617 ~i~~~l 622 (627)
T COG1154 617 RILEWL 622 (627)
T ss_pred HHHHHH
No 333
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=34.10 E-value=60 Score=31.76 Aligned_cols=40 Identities=20% Similarity=0.195 Sum_probs=32.3
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012474 12 KKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNF 52 (463)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 52 (463)
.+++||++.-.|+. ...=...+.++|.++|++|.++.++.
T Consensus 4 l~~k~IllgvTGsi-aa~k~~~lv~~L~~~g~~V~vv~T~~ 43 (399)
T PRK05579 4 LAGKRIVLGVSGGI-AAYKALELVRRLRKAGADVRVVMTEA 43 (399)
T ss_pred CCCCeEEEEEeCHH-HHHHHHHHHHHHHhCCCEEEEEECHh
Confidence 45678888777764 56677899999999999999998864
No 334
>CHL00194 ycf39 Ycf39; Provisional
Probab=33.77 E-value=77 Score=29.73 Aligned_cols=33 Identities=12% Similarity=0.286 Sum_probs=24.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012474 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (463)
|||+++ |+.|.+ -..|+++|.++||+|+.++-.
T Consensus 1 MkIlVt--GatG~i--G~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 1 MSLLVI--GATGTL--GRQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred CEEEEE--CCCcHH--HHHHHHHHHHCCCeEEEEEcC
Confidence 566665 455544 356888999999999999853
No 335
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=33.70 E-value=3.1e+02 Score=26.87 Aligned_cols=136 Identities=16% Similarity=0.176 Sum_probs=74.4
Q ss_pred CCeEEEEecCCcccCCHHHHHHHHHHHhcCCCceEEEEcCCCCCCCccCCCCchhHHHHhcCC-Cceeec-------cCh
Q 012474 275 AKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGR-GHIVKW-------APQ 346 (463)
Q Consensus 275 ~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------vpq 346 (463)
++.+++.-.||++.. ....+++.|.+.+..+-++...... +.. -|..+ +.+.++ ++..-| +.+
T Consensus 6 ~k~IllgvTGsiaa~---k~~~lv~~L~~~g~~V~vv~T~~A~---~fi--~~~~l-~~l~~~~V~~~~~~~~~~~~~~h 76 (399)
T PRK05579 6 GKRIVLGVSGGIAAY---KALELVRRLRKAGADVRVVMTEAAK---KFV--TPLTF-QALSGNPVSTDLWDPAAEAAMGH 76 (399)
T ss_pred CCeEEEEEeCHHHHH---HHHHHHHHHHhCCCEEEEEECHhHH---HHH--hHHHH-HHhhCCceEccccccccCCCcch
Confidence 355666667776542 3445667777777776555543320 000 12222 222222 222112 234
Q ss_pred hhhhcCCCCcccccccChhhHHH-------------HHhhCCceeccccccc-------hhhhHHHHHHHhhceeecCC-
Q 012474 347 QEVLAHPAVGGFWTHNGWNSTLE-------------SICEGVPMICQPCFGD-------QLVNARYVSHVWRVGLHLER- 405 (463)
Q Consensus 347 ~~lL~~~~~~~~I~hgG~~s~~e-------------al~~GvP~l~~P~~~D-------Q~~na~rv~~~~G~G~~l~~- 405 (463)
-++.+++++ .+|.=+-+||+.. ++.+++|++++|.... -..|..++.+ +|+-+.-+.
T Consensus 77 i~l~~~aD~-~vVaPaTaNtlaKiA~GiaDnllt~~~la~~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~-~G~~ii~P~~ 154 (399)
T PRK05579 77 IELAKWADL-VLIAPATADLIAKLAHGIADDLLTTTLLATTAPVLVAPAMNTQMWENPATQRNLATLRS-RGVEIIGPAS 154 (399)
T ss_pred hhcccccCE-EEEeeCCHHHHHHHHcccCCcHHHHHHHhcCCCEEEEeCCChhHcCCHHHHHHHHHHHH-CCCEEECCCC
Confidence 445555554 2455555555443 3667999999995532 2346677777 577665541
Q ss_pred ------------ccCHHHHHHHHHHHhc
Q 012474 406 ------------KFERREIETAIRRVTV 421 (463)
Q Consensus 406 ------------~~t~~~l~~~i~~~l~ 421 (463)
-.++++|...+.+.+.
T Consensus 155 g~la~~~~g~gr~~~~~~I~~~~~~~~~ 182 (399)
T PRK05579 155 GRLACGDVGPGRMAEPEEIVAAAERALS 182 (399)
T ss_pred ccccCCCcCCCCCCCHHHHHHHHHHHhh
Confidence 3577888888877774
No 336
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=33.46 E-value=57 Score=32.08 Aligned_cols=32 Identities=25% Similarity=0.409 Sum_probs=25.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012474 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (463)
|||.|+-.|..| ..+|..|+++||+|+.+...
T Consensus 1 mkI~vIGlG~~G-----~~lA~~La~~G~~V~~~d~~ 32 (411)
T TIGR03026 1 MKIAVIGLGYVG-----LPLAALLADLGHEVTGVDID 32 (411)
T ss_pred CEEEEECCCchh-----HHHHHHHHhcCCeEEEEECC
Confidence 688888666555 68899999999999988654
No 337
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=33.05 E-value=1.6e+02 Score=31.21 Aligned_cols=31 Identities=16% Similarity=0.216 Sum_probs=21.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012474 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHT 50 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (463)
|||+|+..+.. .++..++|.+.||+|..+.+
T Consensus 1 mkivf~g~~~~-----a~~~l~~L~~~~~~i~~V~t 31 (660)
T PRK08125 1 MKAVVFAYHDI-----GCVGIEALLAAGYEIAAVFT 31 (660)
T ss_pred CeEEEECCCHH-----HHHHHHHHHHCCCcEEEEEe
Confidence 78898865442 34555888889999995444
No 338
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=32.78 E-value=75 Score=30.11 Aligned_cols=39 Identities=13% Similarity=0.323 Sum_probs=33.8
Q ss_pred cEEEE--EcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012474 15 RRVIL--FPLPLQGHINPMLQLASILYSKGFSITIIHTNFN 53 (463)
Q Consensus 15 ~~il~--~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 53 (463)
--|.+ ++.|+.|-.--.+.|++.|.++|++|.+++-.+.
T Consensus 50 pvIsVGNi~vGGtGKTP~v~~L~~~l~~~g~~~~ilsRGYg 90 (325)
T PRK00652 50 PVIVVGNITVGGTGKTPVVIALAEQLQARGLKPGVVSRGYG 90 (325)
T ss_pred CEEEEcCeeCCCCChHHHHHHHHHHHHHCCCeEEEECCCCC
Confidence 34566 7889999999999999999999999999998654
No 339
>PRK13055 putative lipid kinase; Reviewed
Probab=32.71 E-value=1.5e+02 Score=28.26 Aligned_cols=81 Identities=12% Similarity=-0.060 Sum_probs=46.3
Q ss_pred EEEEecCCcccCCHHHHHHHHHHHhcCCCceEEE-EcCCCCCCCccCCCCchhHHHHhcCCCceeeccChhhhhcCCCCc
Q 012474 278 VMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWV-VRPGLVPGVEWLEPLPKGFLEMLDGRGHIVKWAPQQEVLAHPAVG 356 (463)
Q Consensus 278 ~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpq~~lL~~~~~~ 356 (463)
.+.++-.|........+..+...+++.+..+.+. +..... ....+. +.......++
T Consensus 6 ~iI~NP~sG~~~~~~~~~~i~~~l~~~g~~~~i~~t~~~~~--------~a~~~~--------------~~~~~~~~d~- 62 (334)
T PRK13055 6 RLIYNPTSGQEIMKKNVADILDILEQAGYETSAFQTTPEPN--------SAKNEA--------------KRAAEAGFDL- 62 (334)
T ss_pred EEEECCCCCchhHHHHHHHHHHHHHHcCCeEEEEEeecCCc--------cHHHHH--------------HHHhhcCCCE-
Confidence 4555555543333455677788888877765432 321110 112221 1111223455
Q ss_pred ccccccChhhHHHHHhh------CCceecccc
Q 012474 357 GFWTHNGWNSTLESICE------GVPMICQPC 382 (463)
Q Consensus 357 ~~I~hgG~~s~~eal~~------GvP~l~~P~ 382 (463)
+|--||=||+.|++.. .+|+-++|.
T Consensus 63 -vvv~GGDGTl~evvngl~~~~~~~~LgiiP~ 93 (334)
T PRK13055 63 -IIAAGGDGTINEVVNGIAPLEKRPKMAIIPA 93 (334)
T ss_pred -EEEECCCCHHHHHHHHHhhcCCCCcEEEECC
Confidence 9999999999998743 478889995
No 340
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=32.63 E-value=90 Score=32.21 Aligned_cols=80 Identities=15% Similarity=0.215 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhcCCCceEEEEcCCCCCCCccCCCCchhHHHHhcCCCceee--------ccC--hhhhhcCCCCcccccc
Q 012474 292 TEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIVK--------WAP--QQEVLAHPAVGGFWTH 361 (463)
Q Consensus 292 ~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~vp--q~~lL~~~~~~~~I~h 361 (463)
...+.+++.|++.+.+.++-+.+.. ...+-+.+.+ .+++..+. |.- +..+-.++.+ +++|
T Consensus 14 ~~~~~l~~~L~~~GV~~vFgvpG~~------~~~l~dal~~--~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv--~~~t 83 (564)
T PRK08155 14 TGAELIVRLLERQGIRIVTGIPGGA------ILPLYDALSQ--STQIRHILARHEQGAGFIAQGMARTTGKPAV--CMAC 83 (564)
T ss_pred cHHHHHHHHHHHcCCCEEEeCCCcc------cHHHHHHHhc--cCCceEEEeccHHHHHHHHHHHHHHcCCCeE--EEEC
Confidence 3466677888888888777766543 1112222211 01222221 111 1112233444 8877
Q ss_pred cCh------hhHHHHHhhCCceeccc
Q 012474 362 NGW------NSTLESICEGVPMICQP 381 (463)
Q Consensus 362 gG~------~s~~eal~~GvP~l~~P 381 (463)
.|- +.+.+|...++|+|++.
T Consensus 84 ~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 84 SGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 764 48999999999999995
No 341
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=32.57 E-value=3.3e+02 Score=23.62 Aligned_cols=39 Identities=13% Similarity=0.260 Sum_probs=31.2
Q ss_pred cEEEEEcCC-CccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012474 15 RRVILFPLP-LQGHINPMLQLASILYSKGFSITIIHTNFN 53 (463)
Q Consensus 15 ~~il~~~~~-~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 53 (463)
.++-|+..| ..|-.--++.-++....+|-.|.++++...
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD 43 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAID 43 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEecccc
Confidence 345566666 348999999999999999999999999643
No 342
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=32.54 E-value=1.3e+02 Score=30.33 Aligned_cols=171 Identities=18% Similarity=0.117 Sum_probs=97.1
Q ss_pred eEEEEecCCccc--CCHHHHHHHHHHHhcCCCceEEEEcCCCCCCCccCCCCchhHHHHhcCCCceeeccC-h--hhhhc
Q 012474 277 SVMYVSFGSIVV--VNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIVKWAP-Q--QEVLA 351 (463)
Q Consensus 277 ~~v~vs~Gs~~~--~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vp-q--~~lL~ 351 (463)
+.-++.+-|... -..+.....+..+-+.+.++++.-.++ +. +++--.+..++.+.++.+.-|.. . ..+++
T Consensus 293 ~~pl~~~vsRl~~QKG~dl~~~~i~~~l~~~~~~vilG~gd--~~---le~~~~~la~~~~~~~~~~i~~~~~la~~i~a 367 (487)
T COG0297 293 PGPLFGFVSRLTAQKGLDLLLEAIDELLEQGWQLVLLGTGD--PE---LEEALRALASRHPGRVLVVIGYDEPLAHLIYA 367 (487)
T ss_pred CCcEEEEeeccccccchhHHHHHHHHHHHhCceEEEEecCc--HH---HHHHHHHHHHhcCceEEEEeeecHHHHHHHHh
Confidence 333444444333 223444444444444455555443331 11 22222334444556556654443 3 44555
Q ss_pred CCCCccccc-----ccChhhHHHHHhhCCceecccccc--chhhhHHH--HHHHhhceeecCCccCHHHHHHHHHHHhcc
Q 012474 352 HPAVGGFWT-----HNGWNSTLESICEGVPMICQPCFG--DQLVNARY--VSHVWRVGLHLERKFERREIETAIRRVTVE 422 (463)
Q Consensus 352 ~~~~~~~I~-----hgG~~s~~eal~~GvP~l~~P~~~--DQ~~na~r--v~~~~G~G~~l~~~~t~~~l~~~i~~~l~~ 422 (463)
-+++ ++- -||. |=++|+++|.+-|+.+..+ |-.....- .... |-|..... .+++++..++++.+.
T Consensus 368 gaD~--~lmPSrfEPcGL-~ql~amryGtvpIv~~tGGLadTV~~~~~~~~~~~-gtGf~f~~-~~~~~l~~al~rA~~- 441 (487)
T COG0297 368 GADV--ILMPSRFEPCGL-TQLYAMRYGTLPIVRETGGLADTVVDRNEWLIQGV-GTGFLFLQ-TNPDHLANALRRALV- 441 (487)
T ss_pred cCCE--EEeCCcCcCCcH-HHHHHHHcCCcceEcccCCccceecCccchhccCc-eeEEEEec-CCHHHHHHHHHHHHH-
Confidence 5555 553 3564 5678999999888888653 32221111 4564 88888887 499999999998885
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHhc
Q 012474 423 AEGQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHILS 462 (463)
Q Consensus 423 ~~~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 462 (463)
-|++.-..++...+.++...-+-+..+++.++..++
T Consensus 442 ----~y~~~~~~w~~~~~~~m~~d~sw~~sa~~y~~lY~~ 477 (487)
T COG0297 442 ----LYRAPPLLWRKVQPNAMGADFSWDLSAKEYVELYKP 477 (487)
T ss_pred ----HhhCCHHHHHHHHHhhcccccCchhHHHHHHHHHHH
Confidence 355555556666666666666677888877776553
No 343
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=32.48 E-value=69 Score=28.00 Aligned_cols=32 Identities=22% Similarity=0.223 Sum_probs=23.0
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012474 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (463)
|+++++ +.|++- ..||+.|+..||+|++.+..
T Consensus 2 ~~~~i~---GtGniG--~alA~~~a~ag~eV~igs~r 33 (211)
T COG2085 2 MIIAII---GTGNIG--SALALRLAKAGHEVIIGSSR 33 (211)
T ss_pred cEEEEe---ccChHH--HHHHHHHHhCCCeEEEecCC
Confidence 445544 344443 57899999999999999774
No 344
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=32.37 E-value=70 Score=30.09 Aligned_cols=38 Identities=11% Similarity=0.076 Sum_probs=30.3
Q ss_pred cEEEEEcCCCc---cCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012474 15 RRVILFPLPLQ---GHINPMLQLASILYSKGFSITIIHTNF 52 (463)
Q Consensus 15 ~~il~~~~~~~---GH~~p~l~La~~L~~rGh~Vt~~~~~~ 52 (463)
|||+|+.-|-. -+......|.++..+|||+|.++.+..
T Consensus 1 m~~~~~~~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~ 41 (312)
T TIGR01380 1 LKVAFQMDPIESINIGKDTTFALMEEAQKRGHELFFYEPGD 41 (312)
T ss_pred CeEEEEeCCHHHCCCCcChHHHHHHHHHHcCCEEEEEehhh
Confidence 67888876532 356678899999999999999999953
No 345
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=32.35 E-value=84 Score=30.65 Aligned_cols=38 Identities=16% Similarity=0.278 Sum_probs=27.1
Q ss_pred cCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012474 10 QQKKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (463)
Q Consensus 10 ~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (463)
...+.|+|+++. +.|-+ -..++++|.++||+|+.++-.
T Consensus 56 ~~~~~~kVLVtG--atG~I--G~~l~~~Ll~~G~~V~~l~R~ 93 (390)
T PLN02657 56 KEPKDVTVLVVG--ATGYI--GKFVVRELVRRGYNVVAVARE 93 (390)
T ss_pred cCCCCCEEEEEC--CCcHH--HHHHHHHHHHCCCEEEEEEec
Confidence 345577777663 44544 567899999999999988753
No 346
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=32.23 E-value=2e+02 Score=28.05 Aligned_cols=96 Identities=16% Similarity=0.115 Sum_probs=57.2
Q ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHhcCCCceEEEEcCCCCCCCccCCCCchhHHHHhcCCCce---eeccChhhhh
Q 012474 274 AAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHI---VKWAPQQEVL 350 (463)
Q Consensus 274 ~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~vpq~~lL 350 (463)
.+||.|-+|+ ......-...+.+.|++.++.+++....+. ...-.|++-....+ .+...+.- -
T Consensus 183 ~~kp~I~iTm---fGvTTp~V~~~~~~Le~~G~Ev~VFHAtG~----------GG~aME~Li~~G~~~~VlDlTttEl-~ 248 (403)
T PF06792_consen 183 EDKPLIGITM---FGVTTPCVDAIRERLEEEGYEVLVFHATGT----------GGRAMERLIREGQFDGVLDLTTTEL-A 248 (403)
T ss_pred CCCcEEEEEC---CCCcHHHHHHHHHHHHhcCCeEEEEcCCCC----------chHHHHHHHHcCCcEEEEECcHHHH-H
Confidence 3577777764 223345677888899999999887654432 12223333333333 24444321 1
Q ss_pred cCCCCcccccccChhhHHHHHhhCCceeccccccc
Q 012474 351 AHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGD 385 (463)
Q Consensus 351 ~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~D 385 (463)
.--++ =|..+|-+=...|...|+|+|+.|-.-|
T Consensus 249 -d~l~G-Gv~sagp~Rl~AA~~~GIP~Vvs~GalD 281 (403)
T PF06792_consen 249 -DELFG-GVLSAGPDRLEAAARAGIPQVVSPGALD 281 (403)
T ss_pred -HHHhC-CCCCCCchHHHHHHHcCCCEEEecCccc
Confidence 01112 2446677888889999999999996544
No 347
>PLN02929 NADH kinase
Probab=32.18 E-value=45 Score=31.10 Aligned_cols=66 Identities=9% Similarity=0.079 Sum_probs=41.6
Q ss_pred cCCCCcccccccChhhHHHHHh---hCCceeccccccc------hhhhHHHHHHHhhceeecCCccCHHHHHHHHHHHhc
Q 012474 351 AHPAVGGFWTHNGWNSTLESIC---EGVPMICQPCFGD------QLVNARYVSHVWRVGLHLERKFERREIETAIRRVTV 421 (463)
Q Consensus 351 ~~~~~~~~I~hgG~~s~~eal~---~GvP~l~~P~~~D------Q~~na~rv~~~~G~G~~l~~~~t~~~l~~~i~~~l~ 421 (463)
..+++ +|+-||-||+..|.. .++|++.+-.-.. +..|.-. +.. -.|--- ..+.+++.+.|.++++
T Consensus 63 ~~~Dl--vi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~-~~r-~lGfL~--~~~~~~~~~~L~~il~ 136 (301)
T PLN02929 63 RDVDL--VVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFD-ARR-STGHLC--AATAEDFEQVLDDVLF 136 (301)
T ss_pred CCCCE--EEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccc-ccc-Cccccc--cCCHHHHHHHHHHHHc
Confidence 45677 999999999999855 4688888765321 1222211 100 122211 4667889999999997
Q ss_pred c
Q 012474 422 E 422 (463)
Q Consensus 422 ~ 422 (463)
+
T Consensus 137 g 137 (301)
T PLN02929 137 G 137 (301)
T ss_pred C
Confidence 6
No 348
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=32.13 E-value=1.4e+02 Score=26.26 Aligned_cols=41 Identities=15% Similarity=0.155 Sum_probs=28.3
Q ss_pred HHHHHHhCCCCCCCceEEEeCCch--hhHHHHHHHcCCCeEEEeCchh
Q 012474 100 CLAKLISNGDQEEPVTCLITDAIW--HFAQTVADTLRLPRIVLRTSSI 145 (463)
Q Consensus 100 ~l~~l~~~~~~~~~pD~VI~D~~~--~~~~~~A~~~giP~v~~~~~~~ 145 (463)
.++++.+ .+||+||..... .....-....++|++.+.....
T Consensus 52 ~~E~i~~-----l~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~~ 94 (238)
T PF01497_consen 52 NLEAILA-----LKPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSSP 94 (238)
T ss_dssp -HHHHHH-----T--SEEEEETTSSCHHHHHHHHHTTSEEEEESSTTC
T ss_pred cHHHHHh-----CCCCEEEEeccccchHHHHHHhcccceEEEeecccc
Confidence 4566666 679999988766 4455566678999999888763
No 349
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=31.95 E-value=51 Score=31.35 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=26.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012474 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (463)
|||+|+..|..| ..+|..|.++||+|+++...
T Consensus 3 mkI~IiG~G~mG-----~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIG-----CYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHH-----HHHHHHHHhcCCcEEEEecH
Confidence 789999777765 46788899999999998863
No 350
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=31.72 E-value=1.1e+02 Score=24.16 Aligned_cols=34 Identities=18% Similarity=0.279 Sum_probs=27.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012474 17 VILFPLPLQGHINPMLQLASILYSKGFSITIIHT 50 (463)
Q Consensus 17 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (463)
++++..|..++-.-+..+++.|+++|+.|..+..
T Consensus 1 ~vv~~HG~~~~~~~~~~~~~~l~~~G~~v~~~~~ 34 (145)
T PF12695_consen 1 VVVLLHGWGGSRRDYQPLAEALAEQGYAVVAFDY 34 (145)
T ss_dssp EEEEECTTTTTTHHHHHHHHHHHHTTEEEEEESC
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEec
Confidence 3566677777777899999999999999988854
No 351
>PRK12342 hypothetical protein; Provisional
Probab=31.63 E-value=78 Score=28.75 Aligned_cols=32 Identities=16% Similarity=0.097 Sum_probs=24.8
Q ss_pred CCceEEEeCCch------hhHHHHHHHcCCCeEEEeCc
Q 012474 112 EPVTCLITDAIW------HFAQTVADTLRLPRIVLRTS 143 (463)
Q Consensus 112 ~~pD~VI~D~~~------~~~~~~A~~~giP~v~~~~~ 143 (463)
.+||+|++...+ .-+..+|+.+|+|++.....
T Consensus 108 ~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 108 IGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred hCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 349999976544 23688999999999987765
No 352
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=31.51 E-value=1.1e+02 Score=25.57 Aligned_cols=31 Identities=19% Similarity=0.261 Sum_probs=23.7
Q ss_pred CCCeEEEEecCCcccCCHHHHHHHHHHHhcC
Q 012474 274 AAKSVMYVSFGSIVVVNVTEFLEIAWGLANS 304 (463)
Q Consensus 274 ~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~ 304 (463)
+.+..+|+++||......+.+...+..+.+.
T Consensus 5 ~~~~~v~i~LGSNlg~~~~~l~~A~~~L~~~ 35 (163)
T PRK14092 5 PASALAYVGLGANLGDAAATLRSVLAELAAA 35 (163)
T ss_pred CcCCEEEEEecCchHhHHHHHHHHHHHHHhC
Confidence 4556899999998866666777777777764
No 353
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=31.31 E-value=64 Score=30.46 Aligned_cols=34 Identities=18% Similarity=0.141 Sum_probs=25.5
Q ss_pred CceEEE-eCCch-hhHHHHHHHcCCCeEEEeCchhH
Q 012474 113 PVTCLI-TDAIW-HFAQTVADTLRLPRIVLRTSSIS 146 (463)
Q Consensus 113 ~pD~VI-~D~~~-~~~~~~A~~~giP~v~~~~~~~~ 146 (463)
.||+|| .|+.. ..+..=|.++|||+|.++-+.+-
T Consensus 152 ~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn~d 187 (326)
T PRK12311 152 LPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTNCD 187 (326)
T ss_pred CCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCCCC
Confidence 588877 45533 66777888999999998877543
No 354
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=31.27 E-value=61 Score=22.36 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=17.5
Q ss_pred HHHHHHHHHhCCCeEEEEeCC
Q 012474 31 MLQLASILYSKGFSITIIHTN 51 (463)
Q Consensus 31 ~l~La~~L~~rGh~Vt~~~~~ 51 (463)
-+..|..|.++|++|+++=..
T Consensus 8 Gl~aA~~L~~~g~~v~v~E~~ 28 (68)
T PF13450_consen 8 GLAAAYYLAKAGYRVTVFEKN 28 (68)
T ss_dssp HHHHHHHHHHTTSEEEEEESS
T ss_pred HHHHHHHHHHCCCcEEEEecC
Confidence 367788999999999999764
No 355
>cd06559 Endonuclease_V Endonuclease_V, a DNA repair enzyme that initiates repair of nitrosative deaminated purine bases. Endonuclease_V (EndoV) is an enzyme that can initiate repair of all possible deaminated DNA bases. EndoV cleaves the DNA strand containing lesions at the second phosphodiester bond 3' to the lesion using Mg2+ as a cofactor. EndoV homologs are conserved throughout all domains of life from bacteria to humans. EndoV is encoded by the nfi gene and nfi null mutant mice have a phenotype prone to cancer. The ability of endonuclease V to recognize mismatches and abnormal replicative DNA structures suggests that the enzyme plays an important role in DNA metabolism. The details of downstream processing for the EndoV pathway remain unknown.
Probab=31.11 E-value=56 Score=28.65 Aligned_cols=32 Identities=22% Similarity=0.110 Sum_probs=20.5
Q ss_pred CCceEEEeCCchhh---HHH----HHHHcCCCeEEEeCc
Q 012474 112 EPVTCLITDAIWHF---AQT----VADTLRLPRIVLRTS 143 (463)
Q Consensus 112 ~~pD~VI~D~~~~~---~~~----~A~~~giP~v~~~~~ 143 (463)
..||+|++|..... .+. +...+++|+|.+.=.
T Consensus 92 ~~PDlilVDG~G~~HpR~~GlA~HlGv~l~~PtIGVAK~ 130 (208)
T cd06559 92 TKPDLLLVDGHGIAHPRRFGLASHLGVLLDLPTIGVAKS 130 (208)
T ss_pred CCCCEEEEeCCccccCCCcchhheeeeecCCCEEEEEcc
Confidence 46999999986632 223 334456788875544
No 356
>PRK13054 lipid kinase; Reviewed
Probab=30.96 E-value=1.9e+02 Score=26.97 Aligned_cols=81 Identities=14% Similarity=0.012 Sum_probs=0.0
Q ss_pred CCeEEEEecCCcccCCHHHHHHHHHHHhcCCCceEEEEcCCCCCCCccCCCCchhHHHHhcCCCceeeccChhhhhcCCC
Q 012474 275 AKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIVKWAPQQEVLAHPA 354 (463)
Q Consensus 275 ~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpq~~lL~~~~ 354 (463)
++-.+.++ |... ....+..+...+...+..+.+..... .....+-. +.......+
T Consensus 4 ~~~~~i~N-~~~~--~~~~~~~~~~~l~~~g~~~~v~~t~~-------~~~a~~~a---------------~~~~~~~~d 58 (300)
T PRK13054 4 PKSLLILN-GKSA--GNEELREAVGLLREEGHTLHVRVTWE-------KGDAARYV---------------EEALALGVA 58 (300)
T ss_pred ceEEEEEC-CCcc--chHHHHHHHHHHHHcCCEEEEEEecC-------CCcHHHHH---------------HHHHHcCCC
Q ss_pred CcccccccChhhHHHHHhh--------CCceecccc
Q 012474 355 VGGFWTHNGWNSTLESICE--------GVPMICQPC 382 (463)
Q Consensus 355 ~~~~I~hgG~~s~~eal~~--------GvP~l~~P~ 382 (463)
+ +|.-||=||+.|++.. .+|+-++|.
T Consensus 59 ~--vvv~GGDGTl~evv~~l~~~~~~~~~~lgiiP~ 92 (300)
T PRK13054 59 T--VIAGGGDGTINEVATALAQLEGDARPALGILPL 92 (300)
T ss_pred E--EEEECCccHHHHHHHHHHhhccCCCCcEEEEeC
No 357
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=30.82 E-value=2e+02 Score=25.72 Aligned_cols=44 Identities=9% Similarity=0.097 Sum_probs=30.2
Q ss_pred hccccccCCCCeEEEEecCCcccCCHHHHHHHHHHHhcCCCceEEE
Q 012474 266 CISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWV 311 (463)
Q Consensus 266 l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~v~~ 311 (463)
+.+|+.. .+.++||-.-|.............+++++++..+...
T Consensus 24 ~~~~~~~--~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l 67 (233)
T PRK05282 24 IAELLAG--RRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGI 67 (233)
T ss_pred HHHHHcC--CCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEe
Confidence 4555552 5668888876655445566778889999998875533
No 358
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.75 E-value=32 Score=31.51 Aligned_cols=29 Identities=14% Similarity=0.238 Sum_probs=23.7
Q ss_pred CCCCcccccccChhhHHHHHh------hCCceecccc
Q 012474 352 HPAVGGFWTHNGWNSTLESIC------EGVPMICQPC 382 (463)
Q Consensus 352 ~~~~~~~I~hgG~~s~~eal~------~GvP~l~~P~ 382 (463)
.+++ +|+-||=||+..|+. .++|++.+..
T Consensus 35 ~~Dl--vi~iGGDGT~L~a~~~~~~~~~~iPilGIN~ 69 (265)
T PRK04885 35 NPDI--VISVGGDGTLLSAFHRYENQLDKVRFVGVHT 69 (265)
T ss_pred CCCE--EEEECCcHHHHHHHHHhcccCCCCeEEEEeC
Confidence 3566 999999999999976 4788887763
No 359
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=30.74 E-value=1.7e+02 Score=25.25 Aligned_cols=33 Identities=24% Similarity=0.236 Sum_probs=24.6
Q ss_pred CCceEEEe-CCch-hhHHHHHHHcCCCeEEEeCch
Q 012474 112 EPVTCLIT-DAIW-HFAQTVADTLRLPRIVLRTSS 144 (463)
Q Consensus 112 ~~pD~VI~-D~~~-~~~~~~A~~~giP~v~~~~~~ 144 (463)
..||+||+ |+.. ..+..=|..+|||++.+.-+.
T Consensus 126 ~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 126 RLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 46898875 4433 556777888999999988774
No 360
>PRK13057 putative lipid kinase; Reviewed
Probab=30.64 E-value=1.1e+02 Score=28.32 Aligned_cols=65 Identities=11% Similarity=0.099 Sum_probs=40.8
Q ss_pred HHHHHHHHHhcCCCceEEEEcCCCCCCCccCCCCchhHHHHhcCCCceeeccChhhhhcCCCCcccccccChhhHHHHH-
Q 012474 293 EFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIVKWAPQQEVLAHPAVGGFWTHNGWNSTLESI- 371 (463)
Q Consensus 293 ~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~I~hgG~~s~~eal- 371 (463)
.+..+...+++.+..+....... +....+ . + + ++....++ +|.-||=||+.|++
T Consensus 14 ~~~~i~~~l~~~g~~~~~~~t~~-----------~~~a~~-------~---~-~-~~~~~~d~--iiv~GGDGTv~~v~~ 68 (287)
T PRK13057 14 ALAAARAALEAAGLELVEPPAED-----------PDDLSE-------V---I-E-AYADGVDL--VIVGGGDGTLNAAAP 68 (287)
T ss_pred hHHHHHHHHHHcCCeEEEEecCC-----------HHHHHH-------H---H-H-HHHcCCCE--EEEECchHHHHHHHH
Confidence 46677788888777755444321 111110 0 0 1 13344566 99999999998885
Q ss_pred ---hhCCceecccc
Q 012474 372 ---CEGVPMICQPC 382 (463)
Q Consensus 372 ---~~GvP~l~~P~ 382 (463)
..++|+-++|.
T Consensus 69 ~l~~~~~~lgiiP~ 82 (287)
T PRK13057 69 ALVETGLPLGILPL 82 (287)
T ss_pred HHhcCCCcEEEECC
Confidence 34789999995
No 361
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=30.60 E-value=92 Score=22.74 Aligned_cols=36 Identities=14% Similarity=0.229 Sum_probs=28.0
Q ss_pred cEEEEEcCCCc--cCHHHHHHHHHHHHhCCCeEEEEeC
Q 012474 15 RRVILFPLPLQ--GHINPMLQLASILYSKGFSITIIHT 50 (463)
Q Consensus 15 ~~il~~~~~~~--GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (463)
-+|+++|.... .+..-...+++.|...|..|.+-..
T Consensus 2 ~qv~i~p~~~~~~~~~~~a~~la~~Lr~~g~~v~~d~~ 39 (94)
T cd00861 2 FDVVIIPMNMKDEVQQELAEKLYAELQAAGVDVLLDDR 39 (94)
T ss_pred eEEEEEEcCCCcHHHHHHHHHHHHHHHHCCCEEEEECC
Confidence 36788887753 4566789999999999999987543
No 362
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=30.51 E-value=78 Score=22.43 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCC
Q 012474 30 PMLQLASILYSKGFSITIIHTNF 52 (463)
Q Consensus 30 p~l~La~~L~~rGh~Vt~~~~~~ 52 (463)
.-+.+|..|.+.|.+||++....
T Consensus 10 ig~E~A~~l~~~g~~vtli~~~~ 32 (80)
T PF00070_consen 10 IGIELAEALAELGKEVTLIERSD 32 (80)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSS
T ss_pred HHHHHHHHHHHhCcEEEEEeccc
Confidence 45889999999999999999854
No 363
>PLN02778 3,5-epimerase/4-reductase
Probab=30.50 E-value=1.1e+02 Score=28.57 Aligned_cols=35 Identities=9% Similarity=0.077 Sum_probs=24.0
Q ss_pred cCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEE
Q 012474 10 QQKKGRRVILFPLPLQGHINPMLQLASILYSKGFSITII 48 (463)
Q Consensus 10 ~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~ 48 (463)
.+..+|||++.-..| .+- ..|++.|.++||+|++.
T Consensus 5 ~~~~~~kiLVtG~tG--fiG--~~l~~~L~~~g~~V~~~ 39 (298)
T PLN02778 5 AGSATLKFLIYGKTG--WIG--GLLGKLCQEQGIDFHYG 39 (298)
T ss_pred CCCCCCeEEEECCCC--HHH--HHHHHHHHhCCCEEEEe
Confidence 445678887765443 332 35788899999999753
No 364
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=30.41 E-value=71 Score=31.47 Aligned_cols=34 Identities=18% Similarity=0.151 Sum_probs=26.4
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012474 13 KGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (463)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (463)
+.|||.|+-.|..| +.+|..|+++||+|+.+-..
T Consensus 2 ~~~kI~VIGlG~~G-----~~~A~~La~~G~~V~~~D~~ 35 (415)
T PRK11064 2 SFETISVIGLGYIG-----LPTAAAFASRQKQVIGVDIN 35 (415)
T ss_pred CccEEEEECcchhh-----HHHHHHHHhCCCEEEEEeCC
Confidence 35788888665443 67899999999999988754
No 365
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=30.23 E-value=1.2e+02 Score=28.00 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=21.0
Q ss_pred ccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012474 25 QGHINPMLQLASILYSKGFSITIIHTN 51 (463)
Q Consensus 25 ~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (463)
.|-+- ..|+++|.++||+|..+...
T Consensus 9 tGfiG--~~l~~~L~~~g~~V~~~~r~ 33 (314)
T COG0451 9 AGFIG--SHLVERLLAAGHDVRGLDRL 33 (314)
T ss_pred cccHH--HHHHHHHHhCCCeEEEEeCC
Confidence 45554 88999999999999999974
No 366
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=30.20 E-value=1.6e+02 Score=28.18 Aligned_cols=86 Identities=21% Similarity=0.292 Sum_probs=52.1
Q ss_pred CCHHHHHHHHHHHhcCCCceEEEEcCCCCC-CCc-cC--CCC-chhHHHHhcCCC--ceeeccCh---hhhhcCCCCccc
Q 012474 289 VNVTEFLEIAWGLANSRVPFLWVVRPGLVP-GVE-WL--EPL-PKGFLEMLDGRG--HIVKWAPQ---QEVLAHPAVGGF 358 (463)
Q Consensus 289 ~~~~~~~~~~~al~~~~~~~v~~~~~~~~~-~~~-~~--~~~-~~~~~~~~~~~~--~~~~~vpq---~~lL~~~~~~~~ 358 (463)
....-+..+++++++.+.++.+.+..+... ... .+ ..+ +... ...++. .+..|++| +.+|-.|++ =
T Consensus 190 Ye~~al~~ll~~~~~~~~pv~lLvp~Gr~~~~v~~~l~~~~~~~g~~--~~~g~L~~~~LPf~~Q~~yD~LLW~cD~--N 265 (371)
T TIGR03837 190 YENAALPALLDALAQSGSPVHLLVPEGRALAAVAAWLGDALLAAGDV--HRRGALTVAVLPFVPQDDYDRLLWACDL--N 265 (371)
T ss_pred cCChhHHHHHHHHHhCCCCeEEEecCCccHHHHHHHhCccccCCccc--cccCceEEEEcCCCChhhHHHHHHhChh--c
Confidence 455567888888888777776666544311 000 00 000 0000 011333 33488887 568988998 5
Q ss_pred ccccChhhHHHHHhhCCceec
Q 012474 359 WTHNGWNSTLESICEGVPMIC 379 (463)
Q Consensus 359 I~hgG~~s~~eal~~GvP~l~ 379 (463)
+-. |=-|+.-|..+|+|+|=
T Consensus 266 fVR-GEDSFVRAqWAgkPfvW 285 (371)
T TIGR03837 266 FVR-GEDSFVRAQWAGKPFVW 285 (371)
T ss_pred Eee-chhHHHHHHHcCCCcee
Confidence 555 67899999999999973
No 367
>PRK07236 hypothetical protein; Provisional
Probab=30.20 E-value=93 Score=30.16 Aligned_cols=37 Identities=19% Similarity=0.303 Sum_probs=30.2
Q ss_pred cCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012474 10 QQKKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (463)
Q Consensus 10 ~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (463)
++|+.++|+++-.|- .-+.+|..|.++|++|+++=-.
T Consensus 2 ~~~~~~~ViIVGaG~-----aGl~~A~~L~~~G~~v~v~E~~ 38 (386)
T PRK07236 2 THMSGPRAVVIGGSL-----GGLFAALLLRRAGWDVDVFERS 38 (386)
T ss_pred CCCCCCeEEEECCCH-----HHHHHHHHHHhCCCCEEEEecC
Confidence 467789999987773 4588999999999999998753
No 368
>PRK09739 hypothetical protein; Provisional
Probab=30.20 E-value=1.3e+02 Score=25.95 Aligned_cols=38 Identities=11% Similarity=0.113 Sum_probs=23.7
Q ss_pred CCcEEEEEcC-CCc-cCHH-HHHHHHHHHHhCCCeEEEEeC
Q 012474 13 KGRRVILFPL-PLQ-GHIN-PMLQLASILYSKGFSITIIHT 50 (463)
Q Consensus 13 ~~~~il~~~~-~~~-GH~~-p~l~La~~L~~rGh~Vt~~~~ 50 (463)
+.|||+++.. |-. |... -.-.+++.|.++||+|+++--
T Consensus 2 ~mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~dL 42 (199)
T PRK09739 2 QSMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELDL 42 (199)
T ss_pred CCceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEh
Confidence 3577777754 432 2222 345566777788999998764
No 369
>TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family. This model describes one of two paralogous families of archaealflavoprotein. The other, described by TIGR02699 and typified by the partially characterized AF1518 of Archaeoglobus fulgidus, is a homodimeric FMN-containing flavoprotein that accepts electrons from ferredoxin and can transfer them to various oxidoreductases. The function of this protein family is unknown.
Probab=30.15 E-value=73 Score=28.53 Aligned_cols=30 Identities=13% Similarity=0.184 Sum_probs=24.5
Q ss_pred CCccCH-HHHHHHHHHHHhC--CCeEEEEeCCC
Q 012474 23 PLQGHI-NPMLQLASILYSK--GFSITIIHTNF 52 (463)
Q Consensus 23 ~~~GH~-~p~l~La~~L~~r--Gh~Vt~~~~~~ 52 (463)
.|.|+. .-...|++.|.++ ||+|.++.++.
T Consensus 7 tGs~~~~~~~~~l~~~L~~~~~g~~V~vv~T~~ 39 (234)
T TIGR02700 7 TGAGHLLVESFQVMKELKREIEELRVSTFVSRA 39 (234)
T ss_pred eCccHhHHHHHHHHHHHHhhcCCCeEEEEEChh
Confidence 333555 6899999999999 99999999864
No 370
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=30.10 E-value=1.2e+02 Score=26.41 Aligned_cols=42 Identities=21% Similarity=0.313 Sum_probs=32.6
Q ss_pred CCCcEEEEEcC--CCccCHHHHHHHHHHHHh-CCCeEEEEeCCCC
Q 012474 12 KKGRRVILFPL--PLQGHINPMLQLASILYS-KGFSITIIHTNFN 53 (463)
Q Consensus 12 ~~~~~il~~~~--~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~~~ 53 (463)
...+|++.++. ++.|-..-...||..|++ +|++|.++-.+..
T Consensus 32 ~~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~ 76 (207)
T TIGR03018 32 KKNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLR 76 (207)
T ss_pred CCCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 34577666665 566888889999999997 6999999976543
No 371
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=29.79 E-value=34 Score=30.83 Aligned_cols=28 Identities=18% Similarity=0.189 Sum_probs=22.9
Q ss_pred CCCcccccccChhhHHHHHhh----CCceecccc
Q 012474 353 PAVGGFWTHNGWNSTLESICE----GVPMICQPC 382 (463)
Q Consensus 353 ~~~~~~I~hgG~~s~~eal~~----GvP~l~~P~ 382 (463)
+++ +|+-||=||+..|+.. ++|++.+-.
T Consensus 26 ~Dl--vi~iGGDGTlL~a~~~~~~~~~PvlGIN~ 57 (246)
T PRK04761 26 ADV--IVALGGDGFMLQTLHRYMNSGKPVYGMNR 57 (246)
T ss_pred CCE--EEEECCCHHHHHHHHHhcCCCCeEEEEeC
Confidence 566 9999999999988664 688887764
No 372
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=29.67 E-value=1e+02 Score=29.71 Aligned_cols=35 Identities=20% Similarity=0.188 Sum_probs=26.4
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012474 12 KKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHT 50 (463)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (463)
.++|||+|. |+.|.+ -..|++.|.++||+|+.+.-
T Consensus 19 ~~~~~IlVt--GgtGfI--G~~l~~~L~~~G~~V~~v~r 53 (370)
T PLN02695 19 SEKLRICIT--GAGGFI--ASHIARRLKAEGHYIIASDW 53 (370)
T ss_pred CCCCEEEEE--CCccHH--HHHHHHHHHhCCCEEEEEEe
Confidence 357888877 444543 45789999999999999875
No 373
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=29.67 E-value=93 Score=27.54 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=31.9
Q ss_pred EEEEEcCC--CccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012474 16 RVILFPLP--LQGHINPMLQLASILYSKGFSITIIHTNF 52 (463)
Q Consensus 16 ~il~~~~~--~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 52 (463)
+|++++.| +-|-.--.-.|+-.|+.+|+.|.++-.+.
T Consensus 3 ~iIVvTSGKGGVGKTTttAnig~aLA~~GkKv~liD~Di 41 (272)
T COG2894 3 RIIVVTSGKGGVGKTTTTANIGTALAQLGKKVVLIDFDI 41 (272)
T ss_pred eEEEEecCCCCcCccchhHHHHHHHHHcCCeEEEEecCc
Confidence 67777776 55899999999999999999999998864
No 374
>PRK07206 hypothetical protein; Provisional
Probab=29.64 E-value=2.4e+02 Score=27.64 Aligned_cols=32 Identities=13% Similarity=0.128 Sum_probs=22.6
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012474 16 RVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNF 52 (463)
Q Consensus 16 ~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 52 (463)
+++++-.... ...+++++.++|+++.+++...
T Consensus 4 ~~liv~~~~~-----~~~~~~a~~~~G~~~v~v~~~~ 35 (416)
T PRK07206 4 KVVIVDPFSS-----GKFLAPAFKKRGIEPIAVTSSC 35 (416)
T ss_pred eEEEEcCCch-----HHHHHHHHHHcCCeEEEEEcCC
Confidence 4555554322 3568999999999999888753
No 375
>PRK07454 short chain dehydrogenase; Provisional
Probab=29.57 E-value=1.1e+02 Score=27.20 Aligned_cols=35 Identities=9% Similarity=0.022 Sum_probs=25.2
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012474 14 GRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (463)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (463)
+||.++++.++ |. --..++++|.++|++|++++-.
T Consensus 5 ~~k~vlItG~s-g~--iG~~la~~l~~~G~~V~~~~r~ 39 (241)
T PRK07454 5 SMPRALITGAS-SG--IGKATALAFAKAGWDLALVARS 39 (241)
T ss_pred CCCEEEEeCCC-ch--HHHHHHHHHHHCCCEEEEEeCC
Confidence 46666666543 43 3467899999999999988753
No 376
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=29.55 E-value=1.1e+02 Score=28.78 Aligned_cols=74 Identities=11% Similarity=0.116 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHHHhcCCCceEEEEcCCCCCCCccCCCCchhHHHHhcCCCceeeccChhhhhcCCCCcccccccChhhHH
Q 012474 289 VNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIVKWAPQQEVLAHPAVGGFWTHNGWNSTL 368 (463)
Q Consensus 289 ~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpq~~lL~~~~~~~~I~hgG~~s~~ 368 (463)
.+.+....+.+++.....+.||.+.++. ... ++.++++...+-.+++. ||-..-..++.
T Consensus 50 ~~~~Ra~dL~~a~~Dp~i~aI~~~rGG~-----------g~~--------rlL~~lD~~~i~~~PK~--fiGySDiTaL~ 108 (308)
T cd07062 50 SPEERAEELMAAFADPSIKAIIPTIGGD-----------DSN--------ELLPYLDYELIKKNPKI--FIGYSDITALH 108 (308)
T ss_pred CHHHHHHHHHHHhcCCCCCEEEECCccc-----------CHh--------hhhhhcCHHHHhhCCCE--EEeccHHHHHH
Confidence 4566788899999998899999887764 112 56666666666677777 77666666666
Q ss_pred HHHh--hCCceeccccc
Q 012474 369 ESIC--EGVPMICQPCF 383 (463)
Q Consensus 369 eal~--~GvP~l~~P~~ 383 (463)
-+++ .|++.+-=|..
T Consensus 109 ~al~~~~g~~t~hGp~~ 125 (308)
T cd07062 109 LAIYKKTGLVTYYGPNL 125 (308)
T ss_pred HHHHHhcCCeEEECccc
Confidence 6663 36666555654
No 377
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=29.49 E-value=1.1e+02 Score=24.46 Aligned_cols=39 Identities=15% Similarity=0.227 Sum_probs=34.7
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012474 13 KGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (463)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (463)
++.||++-..++-+|-..---++..|...|++|......
T Consensus 1 ~~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~ 39 (132)
T TIGR00640 1 RRPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLF 39 (132)
T ss_pred CCCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCC
Confidence 367899999999999999999999999999999988763
No 378
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=29.48 E-value=1.1e+02 Score=28.95 Aligned_cols=29 Identities=28% Similarity=0.407 Sum_probs=20.3
Q ss_pred CCCCcccccccChhhHHHH-----Hhh--CCceeccccc
Q 012474 352 HPAVGGFWTHNGWNSTLES-----ICE--GVPMICQPCF 383 (463)
Q Consensus 352 ~~~~~~~I~hgG~~s~~ea-----l~~--GvP~l~~P~~ 383 (463)
++++ +|.=|| ||+.+. +.+ |+|++.+|..
T Consensus 78 ~~d~--IIaiGG-Gs~~D~aK~ia~~~~~~~p~i~iPTt 113 (332)
T cd07766 78 EVDA--VIAVGG-GSTLDTAKAVAALLNRGLPIIIVPTT 113 (332)
T ss_pred CcCE--EEEeCC-chHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 4666 888877 555554 223 9999999974
No 379
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=29.42 E-value=3.1e+02 Score=28.47 Aligned_cols=28 Identities=11% Similarity=0.171 Sum_probs=22.8
Q ss_pred CCCCcccccccC------hhhHHHHHhhCCceeccc
Q 012474 352 HPAVGGFWTHNG------WNSTLESICEGVPMICQP 381 (463)
Q Consensus 352 ~~~~~~~I~hgG------~~s~~eal~~GvP~l~~P 381 (463)
++.+ +++|.| .+.+.+|...++|+|++.
T Consensus 68 ~~gv--~~~t~GPG~~n~~~gi~~A~~~~~Pvl~I~ 101 (588)
T PRK07525 68 RMGM--VIGQNGPGITNFVTAVATAYWAHTPVVLVT 101 (588)
T ss_pred CCEE--EEEcCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 3445 888887 457889999999999996
No 380
>PRK13337 putative lipid kinase; Reviewed
Probab=29.41 E-value=1.9e+02 Score=27.06 Aligned_cols=28 Identities=11% Similarity=-0.023 Sum_probs=22.4
Q ss_pred CCCcccccccChhhHHHHHhh------CCceecccc
Q 012474 353 PAVGGFWTHNGWNSTLESICE------GVPMICQPC 382 (463)
Q Consensus 353 ~~~~~~I~hgG~~s~~eal~~------GvP~l~~P~ 382 (463)
.++ +|.-||=||+.|++.. ..|+-++|.
T Consensus 58 ~d~--vvv~GGDGTl~~vv~gl~~~~~~~~lgiiP~ 91 (304)
T PRK13337 58 FDL--VIAAGGDGTLNEVVNGIAEKENRPKLGIIPV 91 (304)
T ss_pred CCE--EEEEcCCCHHHHHHHHHhhCCCCCcEEEECC
Confidence 355 9999999999998762 357889995
No 381
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=29.36 E-value=83 Score=32.35 Aligned_cols=94 Identities=17% Similarity=0.150 Sum_probs=47.8
Q ss_pred ChhhhhcCCCCccccccc-Ch-hhHHHHHhhCCceecccccc-chhhhHH--HHHHHhhceeecCCccCHHHHHHHHHHH
Q 012474 345 PQQEVLAHPAVGGFWTHN-GW-NSTLESICEGVPMICQPCFG-DQLVNAR--YVSHVWRVGLHLERKFERREIETAIRRV 419 (463)
Q Consensus 345 pq~~lL~~~~~~~~I~hg-G~-~s~~eal~~GvP~l~~P~~~-DQ~~na~--rv~~~~G~G~~l~~~~t~~~l~~~i~~~ 419 (463)
++.+++.-|+++.|-+-= =| -|-+||+++|||.|..=+.+ -++.+-. .-.. .|+-+.=....+.++..+.|.+.
T Consensus 462 ~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~~-~GV~VvdR~~~n~~e~v~~la~~ 540 (633)
T PF05693_consen 462 DYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSITTNLSGFGCWMQEHIEDPEE-YGVYVVDRRDKNYDESVNQLADF 540 (633)
T ss_dssp -HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEEETTBHHHHHHHTTS-HHGG-GTEEEE-SSSS-HHHHHHHHHHH
T ss_pred CHHHHhccCceeeeccccccccCChHHHhhcCCceeeccchhHHHHHHHhhccCcC-CcEEEEeCCCCCHHHHHHHHHHH
Confidence 344555555553333210 02 28999999999999887753 1121110 1123 36666554455666666655555
Q ss_pred hcc----c--hHHHHHHHHHHHHHHH
Q 012474 420 TVE----A--EGQEMRERIMHLKEKL 439 (463)
Q Consensus 420 l~~----~--~~~~~~~~a~~~~~~~ 439 (463)
|-+ . +...+|++++++++.+
T Consensus 541 l~~f~~~~~rqri~~Rn~ae~LS~~~ 566 (633)
T PF05693_consen 541 LYKFCQLSRRQRIIQRNRAERLSDLA 566 (633)
T ss_dssp HHHHHT--HHHHHHHHHHHHHHGGGG
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHhC
Confidence 532 1 2456777787777654
No 382
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=29.29 E-value=80 Score=29.78 Aligned_cols=33 Identities=15% Similarity=0.221 Sum_probs=28.9
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012474 14 GRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (463)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (463)
.|+|.++-.|++| -+||+.|++.||+|++-..+
T Consensus 1 ~~kI~ViGaGswG-----TALA~~la~ng~~V~lw~r~ 33 (329)
T COG0240 1 MMKIAVIGAGSWG-----TALAKVLARNGHEVRLWGRD 33 (329)
T ss_pred CceEEEEcCChHH-----HHHHHHHHhcCCeeEEEecC
Confidence 3789999888877 57999999999999999975
No 383
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=29.28 E-value=52 Score=28.24 Aligned_cols=93 Identities=13% Similarity=0.118 Sum_probs=42.2
Q ss_pred CCCccCHHHHHHHHHHHHhC--CCeEEEEeCCCCCCC-CCC-C-CCceEEeCCCCCCCcccccccHHHHHHHHHHhcCch
Q 012474 22 LPLQGHINPMLQLASILYSK--GFSITIIHTNFNSPN-PSN-Y-PHFSFNSISESLWESEVSTENAISLLTVLNDKCVVP 96 (463)
Q Consensus 22 ~~~~GH~~p~l~La~~L~~r--Gh~Vt~~~~~~~~~~-~~~-~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (463)
..+.|-+....+|+++|.++ |+.|.+-++...... ..+ . ..+....+|-. ... .
T Consensus 28 a~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~~v~~~~~P~D----------~~~-----------~ 86 (186)
T PF04413_consen 28 AASVGEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPDRVDVQYLPLD----------FPW-----------A 86 (186)
T ss_dssp -SSHHHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GGG-SEEE---S----------SHH-----------H
T ss_pred ECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCCCeEEEEeCcc----------CHH-----------H
Confidence 44569999999999999998 898888766321110 000 0 12222223311 111 1
Q ss_pred HHHHHHHHHhCCCCCCCceEEEeCC--chhhHHHHHHHcCCCeEEEeCc
Q 012474 97 FQDCLAKLISNGDQEEPVTCLITDA--IWHFAQTVADTLRLPRIVLRTS 143 (463)
Q Consensus 97 l~~~l~~l~~~~~~~~~pD~VI~D~--~~~~~~~~A~~~giP~v~~~~~ 143 (463)
.+..+.. .+||++|.-. +++.-+..|++.|||.+.+..-
T Consensus 87 ~~rfl~~--------~~P~~~i~~EtElWPnll~~a~~~~ip~~LvNar 127 (186)
T PF04413_consen 87 VRRFLDH--------WRPDLLIWVETELWPNLLREAKRRGIPVVLVNAR 127 (186)
T ss_dssp HHHHHHH--------H--SEEEEES----HHHHHH-----S-EEEEEE-
T ss_pred HHHHHHH--------hCCCEEEEEccccCHHHHHHHhhcCCCEEEEeee
Confidence 1223333 4578877443 5565677888899999986654
No 384
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=29.11 E-value=1.3e+02 Score=21.56 Aligned_cols=33 Identities=18% Similarity=0.220 Sum_probs=27.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEe
Q 012474 17 VILFPLPLQGHINPMLQLASILYSKGFSITIIH 49 (463)
Q Consensus 17 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~ 49 (463)
+++...++.|-..-...+++.|++.|++|.++.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 455666677888899999999999999998887
No 385
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=29.05 E-value=83 Score=28.37 Aligned_cols=39 Identities=13% Similarity=0.080 Sum_probs=25.6
Q ss_pred HHHHHHhCCCCCCCceEEEeCCchhh--HH-HHHHHcCCCeEEEeCc
Q 012474 100 CLAKLISNGDQEEPVTCLITDAIWHF--AQ-TVADTLRLPRIVLRTS 143 (463)
Q Consensus 100 ~l~~l~~~~~~~~~pD~VI~D~~~~~--~~-~~A~~~giP~v~~~~~ 143 (463)
.++++.+ .+||+||....... .. .+.+.+|+|++.+...
T Consensus 66 n~E~i~~-----l~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~~ 107 (262)
T cd01147 66 NYEKIAA-----LKPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDGG 107 (262)
T ss_pred CHHHHHh-----cCCCEEEEecCCccchhHHHHHHhhCCCEEEEecC
Confidence 5666665 67999998754322 12 2334589999887654
No 386
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=28.92 E-value=4.2e+02 Score=26.48 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012474 13 KGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHT 50 (463)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (463)
.+.|++++..+ ...+.+++.|.+-|-+|..+..
T Consensus 325 ~Gkrv~i~~g~-----~~~~~l~~~l~elGmevv~~~t 357 (456)
T TIGR01283 325 KGKKAAIYTGG-----VKSWSLVSALQDLGMEVVATGT 357 (456)
T ss_pred CCCEEEEEcCC-----chHHHHHHHHHHCCCEEEEEee
Confidence 46677776543 2445788888999999988765
No 387
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=28.91 E-value=1.6e+02 Score=26.41 Aligned_cols=40 Identities=18% Similarity=0.235 Sum_probs=33.7
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCC-CeEEEEeCCCCC
Q 012474 15 RRVILFPLPLQGHINPMLQLASILYSKG-FSITIIHTNFNS 54 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rG-h~Vt~~~~~~~~ 54 (463)
|||++.-=|+.|-..-.--|+.+|.++| ++|..+-.+++.
T Consensus 1 mkIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDpd~ 41 (255)
T COG3640 1 MKIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADPDS 41 (255)
T ss_pred CeEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCCCC
Confidence 7899999999998887777788888885 999999887653
No 388
>cd01421 IMPCH Inosine monophosphate cyclohydrolase domain. This is the N-terminal domain in the purine biosynthesis pathway protein ATIC (purH). The bifunctional ATIC protein contains a C-terminal ATIC formylase domain that formylates 5-aminoimidazole-4-carboxamide-ribonucleotide. The IMPCH domain then converts the formyl-5-aminoimidazole-4-carboxamide-ribonucleotide to inosine monophosphate. This is the final step in de novo purine production.
Probab=28.87 E-value=75 Score=27.23 Aligned_cols=38 Identities=13% Similarity=0.161 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCC
Q 012474 29 NPMLQLASILYSKGFSITIIHTNFNSPNPSNYPHFSFNSIS 69 (463)
Q Consensus 29 ~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~g~~~~~~~ 69 (463)
.-.+.+|+.|.+.|+++. .|.. -.....+ .|+.+..+.
T Consensus 11 ~~l~~lAk~L~~lGf~I~-AT~G-TAk~L~e-~GI~v~~V~ 48 (187)
T cd01421 11 TGLVEFAKELVELGVEIL-STGG-TAKFLKE-AGIPVTDVS 48 (187)
T ss_pred ccHHHHHHHHHHCCCEEE-EccH-HHHHHHH-cCCeEEEhh
Confidence 347899999999999983 4432 2122222 467666665
No 389
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=28.86 E-value=1.7e+02 Score=24.77 Aligned_cols=114 Identities=14% Similarity=0.100 Sum_probs=55.6
Q ss_pred cCHHHHHHHHHHH-HhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCC----------CCcc--------c-ccccHHHH
Q 012474 26 GHINPMLQLASIL-YSKGFSITIIHTNFNSPNPSNYPHFSFNSISESL----------WESE--------V-STENAISL 85 (463)
Q Consensus 26 GH~~p~l~La~~L-~~rGh~Vt~~~~~~~~~~~~~~~g~~~~~~~~~~----------~~~~--------~-~~~~~~~~ 85 (463)
+.+.-.+..|++| .+.|.+|.+.-+. ......+..++..+.++.+. .... . ...+...+
T Consensus 17 ~~~e~~v~~a~~~~~~~g~dViIsRG~-ta~~lr~~~~iPVV~I~~s~~Dil~al~~a~~~~~~Iavv~~~~~~~~~~~~ 95 (176)
T PF06506_consen 17 ASLEEAVEEARQLLESEGADVIISRGG-TAELLRKHVSIPVVEIPISGFDILRALAKAKKYGPKIAVVGYPNIIPGLESI 95 (176)
T ss_dssp --HHHHHHHHHHHHTTTT-SEEEEEHH-HHHHHHCC-SS-EEEE---HHHHHHHHHHCCCCTSEEEEEEESS-SCCHHHH
T ss_pred ecHHHHHHHHHHhhHhcCCeEEEECCH-HHHHHHHhCCCCEEEECCCHhHHHHHHHHHHhcCCcEEEEecccccHHHHHH
Confidence 5677788899999 7889998887653 11111111234444444100 0000 0 00111111
Q ss_pred HHHHH---H-hc---CchHHHHHHHHHhCCCCCCCceEEEeCCchhhHHHHHHHcCCCeEEEeCchhHHH
Q 012474 86 LTVLN---D-KC---VVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRTSSISSF 148 (463)
Q Consensus 86 ~~~~~---~-~~---~~~l~~~l~~l~~~~~~~~~pD~VI~D~~~~~~~~~A~~~giP~v~~~~~~~~~~ 148 (463)
-..+. . .. ...+...+.++.. .+.|+||.+.. ...+|+++|+|++.+.++..+-.
T Consensus 96 ~~ll~~~i~~~~~~~~~e~~~~i~~~~~-----~G~~viVGg~~---~~~~A~~~gl~~v~i~sg~esi~ 157 (176)
T PF06506_consen 96 EELLGVDIKIYPYDSEEEIEAAIKQAKA-----EGVDVIVGGGV---VCRLARKLGLPGVLIESGEESIR 157 (176)
T ss_dssp HHHHT-EEEEEEESSHHHHHHHHHHHHH-----TT--EEEESHH---HHHHHHHTTSEEEESS--HHHHH
T ss_pred HHHhCCceEEEEECCHHHHHHHHHHHHH-----cCCcEEECCHH---HHHHHHHcCCcEEEEEecHHHHH
Confidence 11111 0 01 1233446666666 57999999964 47889999999999887655433
No 390
>PRK10037 cell division protein; Provisional
Probab=28.81 E-value=84 Score=28.35 Aligned_cols=29 Identities=21% Similarity=0.049 Sum_probs=25.2
Q ss_pred CccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012474 24 LQGHINPMLQLASILYSKGFSITIIHTNF 52 (463)
Q Consensus 24 ~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 52 (463)
|-|-..-...||..|+++|++|.++=.++
T Consensus 12 GvGKTT~a~nLA~~La~~G~rVLlID~D~ 40 (250)
T PRK10037 12 GVGTTSITAALAWSLQMLGENVLVIDACP 40 (250)
T ss_pred CccHHHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 55888999999999999999999995544
No 391
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=28.76 E-value=6.6e+02 Score=26.11 Aligned_cols=37 Identities=8% Similarity=-0.048 Sum_probs=27.0
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012474 12 KKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFN 53 (463)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 53 (463)
+..++|+++-.+ .-...++++..+.|++|.++....+
T Consensus 20 ~~~k~IgIIGgG-----qlg~mla~aA~~lG~~Vi~ld~~~~ 56 (577)
T PLN02948 20 VSETVVGVLGGG-----QLGRMLCQAASQMGIKVKVLDPLED 56 (577)
T ss_pred CCCCEEEEECCC-----HHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 346688888776 3345667777788999999987543
No 392
>PRK08309 short chain dehydrogenase; Provisional
Probab=28.70 E-value=78 Score=26.89 Aligned_cols=31 Identities=19% Similarity=0.384 Sum_probs=21.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012474 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHT 50 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (463)
|+++++- ++ | +. ..+++.|.++|++|++++.
T Consensus 1 m~vlVtG-Gt-G-~g--g~la~~L~~~G~~V~v~~R 31 (177)
T PRK08309 1 MHALVIG-GT-G-ML--KRVSLWLCEKGFHVSVIAR 31 (177)
T ss_pred CEEEEEC-cC-H-HH--HHHHHHHHHCcCEEEEEEC
Confidence 5555443 33 5 33 4599999999999998875
No 393
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=28.69 E-value=6.2e+02 Score=25.53 Aligned_cols=28 Identities=18% Similarity=0.329 Sum_probs=24.4
Q ss_pred CccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012474 24 LQGHINPMLQLASILYSKGFSITIIHTN 51 (463)
Q Consensus 24 ~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (463)
..|-..-...|++.|+++|.+|..+-+.
T Consensus 9 ~vGKT~v~~~L~~~l~~~G~~v~~fKp~ 36 (475)
T TIGR00313 9 SAGKSTLTAGLCRILARRGYRVAPFKSQ 36 (475)
T ss_pred CCCHHHHHHHHHHHHHhCCCeEEEECCc
Confidence 3488889999999999999999988774
No 394
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 2E6K_A 3JU3_A 2R8P_B ....
Probab=28.65 E-value=81 Score=24.75 Aligned_cols=37 Identities=16% Similarity=0.302 Sum_probs=31.2
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012474 12 KKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHT 50 (463)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (463)
.++-.++++++|.. +...+..+++|.+.|.+++++..
T Consensus 7 ~~g~di~iia~G~~--~~~al~A~~~L~~~Gi~~~vi~~ 43 (124)
T PF02780_consen 7 REGADITIIAYGSM--VEEALEAAEELEEEGIKAGVIDL 43 (124)
T ss_dssp ESSSSEEEEEETTH--HHHHHHHHHHHHHTTCEEEEEEE
T ss_pred eCCCCEEEEeehHH--HHHHHHHHHHHHHcCCceeEEee
Confidence 45667899998876 46679999999999999999876
No 395
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=28.64 E-value=41 Score=31.28 Aligned_cols=29 Identities=24% Similarity=0.199 Sum_probs=23.5
Q ss_pred cCCCCcccccccChhhHHHHHhh----CCceeccc
Q 012474 351 AHPAVGGFWTHNGWNSTLESICE----GVPMICQP 381 (463)
Q Consensus 351 ~~~~~~~~I~hgG~~s~~eal~~----GvP~l~~P 381 (463)
..+++ +|+-||-||+.+++.. ++|++.+.
T Consensus 62 ~~~d~--vi~~GGDGt~l~~~~~~~~~~~pilGIn 94 (291)
T PRK02155 62 ARADL--AVVLGGDGTMLGIGRQLAPYGVPLIGIN 94 (291)
T ss_pred cCCCE--EEEECCcHHHHHHHHHhcCCCCCEEEEc
Confidence 35677 9999999999999774 67887665
No 396
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=28.62 E-value=82 Score=27.46 Aligned_cols=35 Identities=20% Similarity=0.168 Sum_probs=27.0
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012474 12 KKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (463)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (463)
-+..+|+++-.|..| ...++.|.+.|++||++++.
T Consensus 8 l~~k~vLVIGgG~va-----~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 8 LSNKRVVIVGGGKVA-----GRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred cCCCEEEEECCCHHH-----HHHHHHHHHCCCeEEEEcCC
Confidence 345688888766543 66789999999999999874
No 397
>COG2840 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.46 E-value=50 Score=28.18 Aligned_cols=59 Identities=17% Similarity=0.156 Sum_probs=36.0
Q ss_pred HHHHHhcCCCceEEEEcCCCCCCCccCCCCchhHHHHhcCCCceeeccCh-hhhhcCCCCcccccccChhhHH
Q 012474 297 IAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGFLEMLDGRGHIVKWAPQ-QEVLAHPAVGGFWTHNGWNSTL 368 (463)
Q Consensus 297 ~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpq-~~lL~~~~~~~~I~hgG~~s~~ 368 (463)
++....+.+.+++.++.+.. ...-.+++.+. .+-.|+-| .+|+....+ -=+|||-|.++
T Consensus 116 Fi~~a~~~~~rcv~VihGkG------~s~g~~~vLK~-----~Vp~WL~qhp~V~a~~~a--~~~hGG~GAly 175 (184)
T COG2840 116 FIARARAEGLRCVLVIHGKG------RSKGSKPVLKS-----QVPRWLTQHPDVLAFHQA--PRRHGGDGALY 175 (184)
T ss_pred HHHHHHHhCCcEEEEEeCCC------cCCCCchhHHH-----HHHHHHHhChHHHhhccc--chhcCCceEEE
Confidence 33344445777777776654 11112333221 34577776 778888888 88999998765
No 398
>PRK09165 replicative DNA helicase; Provisional
Probab=28.46 E-value=1.3e+02 Score=30.50 Aligned_cols=36 Identities=17% Similarity=0.127 Sum_probs=29.2
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhC---------------CCeEEEEeCCC
Q 012474 17 VILFPLPLQGHINPMLQLASILYSK---------------GFSITIIHTNF 52 (463)
Q Consensus 17 il~~~~~~~GH~~p~l~La~~L~~r---------------Gh~Vt~~~~~~ 52 (463)
+++..-|+.|-..-.+.+|...+.+ |..|.|++-+.
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEM 270 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEM 270 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcC
Confidence 6667778889999999999888653 78899998863
No 399
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=28.45 E-value=63 Score=26.90 Aligned_cols=31 Identities=19% Similarity=0.297 Sum_probs=23.5
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012474 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHT 50 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (463)
|||.|+-.|..| .++|+.|.++||+|++.-.
T Consensus 2 ~~Ig~IGlG~mG-----~~~a~~L~~~g~~v~~~d~ 32 (163)
T PF03446_consen 2 MKIGFIGLGNMG-----SAMARNLAKAGYEVTVYDR 32 (163)
T ss_dssp BEEEEE--SHHH-----HHHHHHHHHTTTEEEEEES
T ss_pred CEEEEEchHHHH-----HHHHHHHHhcCCeEEeecc
Confidence 678888777544 6899999999999988754
No 400
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=28.36 E-value=1.1e+02 Score=25.64 Aligned_cols=39 Identities=26% Similarity=0.334 Sum_probs=27.5
Q ss_pred CCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012474 11 QKKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHT 50 (463)
Q Consensus 11 ~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (463)
..+..+|++++.++- .=-=-+.+|+.|.++|++|+++..
T Consensus 22 ~~~~~~v~il~G~Gn-NGgDgl~~AR~L~~~G~~V~v~~~ 60 (169)
T PF03853_consen 22 SPKGPRVLILCGPGN-NGGDGLVAARHLANRGYNVTVYLV 60 (169)
T ss_dssp CCTT-EEEEEE-SSH-HHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred ccCCCeEEEEECCCC-ChHHHHHHHHHHHHCCCeEEEEEE
Confidence 356778888888762 112378899999999999999443
No 401
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=28.31 E-value=71 Score=31.57 Aligned_cols=40 Identities=20% Similarity=0.244 Sum_probs=28.8
Q ss_pred hccCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012474 8 NVQQKKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNF 52 (463)
Q Consensus 8 ~~~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 52 (463)
+...+++.||+++-.|.-| +..|+.|...+++||++.+..
T Consensus 4 ~~~~~~~~~vVIvGgG~aG-----l~~a~~L~~~~~~ItlI~~~~ 43 (424)
T PTZ00318 4 RTARLKKPNVVVLGTGWAG-----AYFVRNLDPKKYNITVISPRN 43 (424)
T ss_pred cccCCCCCeEEEECCCHHH-----HHHHHHhCcCCCeEEEEcCCC
Confidence 4555677888888766544 345788877789999998743
No 402
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=28.27 E-value=1e+02 Score=23.93 Aligned_cols=34 Identities=18% Similarity=0.037 Sum_probs=29.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012474 17 VILFPLPLQGHINPMLQLASILYSKGFSITIIHT 50 (463)
Q Consensus 17 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (463)
++..+.++..|-.....++..|.++|++|.++..
T Consensus 2 ~l~~~~~~~~h~lg~~~~~~~l~~~G~~v~~l~~ 35 (125)
T cd02065 2 VLGATVGGDVHDIGKNIVAIALRDNGFEVIDLGV 35 (125)
T ss_pred EEEEEcCCchhhHHHHHHHHHHHHCCCEEEEcCC
Confidence 5667777789999999999999999999998855
No 403
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=28.24 E-value=87 Score=30.56 Aligned_cols=39 Identities=15% Similarity=0.249 Sum_probs=31.4
Q ss_pred CCCcEEEEEcCC-Cc--cCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012474 12 KKGRRVILFPLP-LQ--GHINPMLQLASILYSKGFSITIIHTN 51 (463)
Q Consensus 12 ~~~~~il~~~~~-~~--GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (463)
.-+..+.|-|.+ .. ||+.|+..|. .|.+.||+|+++..+
T Consensus 32 ~~~~Y~GfDPTa~slHlGhlv~l~kL~-~fQ~aGh~~ivLigd 73 (401)
T COG0162 32 PLRVYIGFDPTAPSLHLGHLVPLMKLR-RFQDAGHKPIVLIGD 73 (401)
T ss_pred CceEEEeeCCCCCccchhhHHHHHHHH-HHHHCCCeEEEEecc
Confidence 347788888888 33 9999988775 679999999999884
No 404
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=28.22 E-value=2.9e+02 Score=21.61 Aligned_cols=55 Identities=18% Similarity=0.222 Sum_probs=36.2
Q ss_pred hccccccCCCCeEEEEecCCcccC-CHHHHHHHHHHHhcCCCceEEEEcCCCCCCCccCCCCchhH
Q 012474 266 CISWLDKQAAKSVMYVSFGSIVVV-NVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKGF 330 (463)
Q Consensus 266 l~~~l~~~~~~~~v~vs~Gs~~~~-~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 330 (463)
..+|+... -+++|.|-.... +.+.+..+++.+.+.+.-.+..-.+.. ..++|+.+
T Consensus 36 ~~~~l~~g----Elvlttg~~~~~~~~~~~~~~i~~L~~~~~agL~i~~~~~------~~~iP~~~ 91 (123)
T PF07905_consen 36 PSDWLRGG----ELVLTTGYALRDDDEEELREFIRELAEKGAAGLGIKTGRY------LDEIPEEI 91 (123)
T ss_pred HHHhCCCC----eEEEECCcccCCCCHHHHHHHHHHHHHCCCeEEEEeccCc------cccCCHHH
Confidence 46777652 577777776654 566788899999988876655433322 44577666
No 405
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=28.04 E-value=65 Score=24.83 Aligned_cols=39 Identities=13% Similarity=-0.049 Sum_probs=27.5
Q ss_pred hhhhcCCCCccccccc---ChhhHHHH---HhhCCceeccccccc
Q 012474 347 QEVLAHPAVGGFWTHN---GWNSTLES---ICEGVPMICQPCFGD 385 (463)
Q Consensus 347 ~~lL~~~~~~~~I~hg---G~~s~~ea---l~~GvP~l~~P~~~D 385 (463)
...+..|++-.++-.| +.||..|. .+.|+|++++-.-..
T Consensus 56 ~~~i~~~D~via~l~~~~~d~Gt~~ElG~A~algkpv~~~~~d~~ 100 (113)
T PF05014_consen 56 LEGIRECDIVIANLDGFRPDSGTAFELGYAYALGKPVILLTEDDR 100 (113)
T ss_dssp HHHHHHSSEEEEEECSSS--HHHHHHHHHHHHTTSEEEEEECCCC
T ss_pred HHHHHHCCEEEEECCCCCCCCcHHHHHHHHHHCCCEEEEEEcCCc
Confidence 5567777774455555 89999996 778999998865433
No 406
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.04 E-value=1.9e+02 Score=21.30 Aligned_cols=49 Identities=12% Similarity=0.154 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 012474 410 REIETAIRRVTVEAE-GQEMRERIMHLKEKLELSLLEAGSSYQSLERLVDHIL 461 (463)
Q Consensus 410 ~~l~~~i~~~l~~~~-~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 461 (463)
++....++++.+|.. -..+|+.|....+.+.+ ++.+..-.+...+-.|+
T Consensus 16 ~q~~~lL~~Ii~DttVPRNIRraA~~a~e~L~~---e~e~p~vRaAtaIsiLe 65 (93)
T COG1698 16 NQVMQLLDEIIQDTTVPRNIRRAAEEAKEALNN---EGESPAVRAATAISILE 65 (93)
T ss_pred HHHHHHHHHHHccccccHHHHHHHHHHHHHHhC---CCCCchhHHHHHHHHHH
Confidence 344455677777722 13455555555555553 35555444444444433
No 407
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=28.02 E-value=1e+02 Score=28.74 Aligned_cols=38 Identities=11% Similarity=0.003 Sum_probs=28.9
Q ss_pred CcEEEEEcCCCc-cCHH---HHHHHHHHHHhCCCeEEEEeCC
Q 012474 14 GRRVILFPLPLQ-GHIN---PMLQLASILYSKGFSITIIHTN 51 (463)
Q Consensus 14 ~~~il~~~~~~~-GH~~---p~l~La~~L~~rGh~Vt~~~~~ 51 (463)
++||++++.+.. =|-. -...+.++|.++||+|.++...
T Consensus 4 ~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~~~ 45 (304)
T PRK01372 4 FGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPIDPG 45 (304)
T ss_pred CcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEecC
Confidence 458888885533 2444 5689999999999999998664
No 408
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=27.91 E-value=2.7e+02 Score=24.18 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=26.8
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCC-eEEEEeCC
Q 012474 13 KGRRVILFPLPLQGHINPMLQLASILYSKGF-SITIIHTN 51 (463)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh-~Vt~~~~~ 51 (463)
+..||+++-.++.| ..+++.|+..|. +++++-.+
T Consensus 20 ~~~~VlviG~GglG-----s~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 20 LNSHVLIIGAGGLG-----SPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred cCCCEEEECCCHHH-----HHHHHHHHHcCCCeEEEecCC
Confidence 47789999988766 467899999996 77777664
No 409
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=27.89 E-value=3.1e+02 Score=29.54 Aligned_cols=39 Identities=18% Similarity=0.179 Sum_probs=30.6
Q ss_pred CcEEEEEcCC--CccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012474 14 GRRVILFPLP--LQGHINPMLQLASILYSKGFSITIIHTNF 52 (463)
Q Consensus 14 ~~~il~~~~~--~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 52 (463)
..|++.++.+ +-|-..-...||..|+..|++|.++-.+.
T Consensus 545 ~~kvi~vts~~~G~GKTt~a~nLA~~lA~~g~rvLlID~D~ 585 (754)
T TIGR01005 545 EPEVVETQRPRPVLGKSDIEANAAALIASGGKRALLIDADG 585 (754)
T ss_pred CceEEEeecCCCCCChhHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 3455555444 66899999999999999999999997653
No 410
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=27.76 E-value=1.2e+02 Score=26.99 Aligned_cols=34 Identities=24% Similarity=0.342 Sum_probs=27.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCe-EEEEeC
Q 012474 17 VILFPLPLQGHINPMLQLASILYSKGFS-ITIIHT 50 (463)
Q Consensus 17 il~~~~~~~GH~~p~l~La~~L~~rGh~-Vt~~~~ 50 (463)
|+|...|..|--.....|.+.|+++||. ++.+..
T Consensus 4 Vvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~ 38 (281)
T KOG3062|consen 4 VVICGLPCSGKSTRAVELREALKERGTKQSVRIID 38 (281)
T ss_pred EEEeCCCCCCchhHHHHHHHHHHhhcccceEEEec
Confidence 6677788999999999999999999986 444444
No 411
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=27.71 E-value=3.3e+02 Score=27.74 Aligned_cols=48 Identities=17% Similarity=0.221 Sum_probs=34.7
Q ss_pred chHHHHHHHHHhCCCCCCCceEEE----eCCchhhHHHHHHHcCCCeEEEeCchhH
Q 012474 95 VPFQDCLAKLISNGDQEEPVTCLI----TDAIWHFAQTVADTLRLPRIVLRTSSIS 146 (463)
Q Consensus 95 ~~l~~~l~~l~~~~~~~~~pD~VI----~D~~~~~~~~~A~~~giP~v~~~~~~~~ 146 (463)
..+.+.++...+. ..+|.+| +|-..+..+..|.++++|.+++..++..
T Consensus 75 elIAdsiE~~~~~----~~~Dg~v~l~~CDK~~PG~lMaaarlniP~i~v~gGpm~ 126 (535)
T TIGR00110 75 EIIADSVETMVNA----HRFDGLVCIPSCDKITPGMLMAAARLNIPSIFVTGGPML 126 (535)
T ss_pred HHHHHHHHHHHhc----CCcceEEEeccCCCCcHHHHHHHHhcCCCEEEEeCCCcc
Confidence 3344555555554 5688888 5666687788899999999999877644
No 412
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=27.62 E-value=1e+02 Score=26.24 Aligned_cols=39 Identities=13% Similarity=0.120 Sum_probs=25.6
Q ss_pred HHHHHHhCCCCCCCceEEEeCCchhh-HHHHHHHcCCCeEEEeCc
Q 012474 100 CLAKLISNGDQEEPVTCLITDAIWHF-AQTVADTLRLPRIVLRTS 143 (463)
Q Consensus 100 ~l~~l~~~~~~~~~pD~VI~D~~~~~-~~~~A~~~giP~v~~~~~ 143 (463)
.++++.+ .+||+||....... ...-.+..|+|++.+...
T Consensus 52 n~E~l~~-----l~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~~ 91 (195)
T cd01143 52 NVEKIVA-----LKPDLVIVSSSSLAELLEKLKDAGIPVVVLPAA 91 (195)
T ss_pred CHHHHhc-----cCCCEEEEcCCcCHHHHHHHHHcCCcEEEeCCC
Confidence 5666665 67999998653322 234456689998876543
No 413
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=27.53 E-value=93 Score=30.92 Aligned_cols=35 Identities=26% Similarity=0.413 Sum_probs=31.1
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012474 14 GRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFN 53 (463)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 53 (463)
.+||+++-.+..| +..++.|.++|++|++.-....
T Consensus 7 ~~kv~V~GLG~sG-----~a~a~~L~~~G~~v~v~D~~~~ 41 (448)
T COG0771 7 GKKVLVLGLGKSG-----LAAARFLLKLGAEVTVSDDRPA 41 (448)
T ss_pred CCEEEEEeccccc-----HHHHHHHHHCCCeEEEEcCCCC
Confidence 7899999999888 8999999999999999876433
No 414
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=27.53 E-value=94 Score=30.65 Aligned_cols=40 Identities=15% Similarity=0.189 Sum_probs=32.1
Q ss_pred CCcEEEEEcCCCc--c-CHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012474 13 KGRRVILFPLPLQ--G-HINPMLQLASILYSKGFSITIIHTNF 52 (463)
Q Consensus 13 ~~~~il~~~~~~~--G-H~~p~l~La~~L~~rGh~Vt~~~~~~ 52 (463)
...||+++|.-+. . -.....+|++.|.++|.+|.|..++-
T Consensus 305 ~A~~ViIVPGYGmAVAqAQh~v~el~~~L~~~Gv~V~faIHPV 347 (462)
T PRK09444 305 NSHSVIITPGYGMAVAQAQYPVAEITEKLRARGINVRFGIHPV 347 (462)
T ss_pred hCCcEEEECChHHHHHHHHHHHHHHHHHHHHCCCeEEEEeccc
Confidence 4678999887754 2 34578899999999999999999863
No 415
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=27.47 E-value=1.1e+02 Score=26.46 Aligned_cols=36 Identities=25% Similarity=0.392 Sum_probs=28.5
Q ss_pred cEEEEEcCCCccCHHHHHH-HHHHHHh-CCCeEEEEeC
Q 012474 15 RRVILFPLPLQGHINPMLQ-LASILYS-KGFSITIIHT 50 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~-La~~L~~-rGh~Vt~~~~ 50 (463)
|||+++-+..+||..-+.. +++.+.+ .|++|.++.-
T Consensus 2 ~kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l 39 (200)
T PRK03767 2 AKVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRV 39 (200)
T ss_pred CeEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEec
Confidence 5888888888999998776 5555665 8999988875
No 416
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=27.46 E-value=65 Score=28.40 Aligned_cols=31 Identities=26% Similarity=0.156 Sum_probs=23.0
Q ss_pred cEEEEEc-CCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012474 15 RRVILFP-LPLQGHINPMLQLASILYSKGFSITIIHT 50 (463)
Q Consensus 15 ~~il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (463)
|||.|+- .|..| ..++..|.++||+|++...
T Consensus 1 MkI~IIGG~G~mG-----~ala~~L~~~G~~V~v~~r 32 (219)
T TIGR01915 1 MKIAVLGGTGDQG-----KGLALRLAKAGNKIIIGSR 32 (219)
T ss_pred CEEEEEcCCCHHH-----HHHHHHHHhCCCEEEEEEc
Confidence 6788774 34333 4788999999999998754
No 417
>COG3245 CycB Cytochrome c5 [Energy production and conversion]
Probab=27.43 E-value=1.1e+02 Score=23.79 Aligned_cols=48 Identities=19% Similarity=0.260 Sum_probs=37.0
Q ss_pred HhhCCceeccccccchhhhHHHHHHHhhceeec-----------CC----ccCHHHHHHHHHHHh
Q 012474 371 ICEGVPMICQPCFGDQLVNARYVSHVWRVGLHL-----------ER----KFERREIETAIRRVT 420 (463)
Q Consensus 371 l~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l-----------~~----~~t~~~l~~~i~~~l 420 (463)
.+|+.++...|..+|.-.|+-|+.+ |.-..+ ++ ..+++++..+|+.+.
T Consensus 60 ~CHa~~~~GAPk~GdkAaW~PRiaq--G~dtL~~hai~GfnAMPpkG~ca~cSdDe~kAaId~M~ 122 (126)
T COG3245 60 ACHAAGLPGAPKTGDKAAWAPRIAQ--GKDTLLDHAINGFNAMPPKGGCADCSDDEVKAAIDFMA 122 (126)
T ss_pred HhccCCCCCCCCCCchhhhhhHHHh--chHHHHHHHhccccCCCCCCCcCCCCHHHHHHHHHHHH
Confidence 5677789999999999999999876 443333 33 578899999987664
No 418
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=27.42 E-value=77 Score=29.99 Aligned_cols=33 Identities=27% Similarity=0.338 Sum_probs=27.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012474 14 GRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (463)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (463)
.|||.|+-.|..| ..+|..|.++||+|+++...
T Consensus 4 ~m~I~iIG~G~mG-----~~ia~~L~~~G~~V~~~~r~ 36 (328)
T PRK14618 4 GMRVAVLGAGAWG-----TALAVLAASKGVPVRLWARR 36 (328)
T ss_pred CCeEEEECcCHHH-----HHHHHHHHHCCCeEEEEeCC
Confidence 5789999777755 56888999999999998874
No 419
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=27.39 E-value=28 Score=30.50 Aligned_cols=35 Identities=14% Similarity=0.149 Sum_probs=29.5
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012474 17 VILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (463)
Q Consensus 17 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (463)
+++.---+.|--.-+++++.-+...||.|++++++
T Consensus 31 ~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe 65 (235)
T COG2874 31 ILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTE 65 (235)
T ss_pred EEEECCCCccHHHHHHHHHHHHHhCCceEEEEEec
Confidence 44444447799999999999999999999999996
No 420
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=27.34 E-value=69 Score=32.06 Aligned_cols=32 Identities=16% Similarity=0.322 Sum_probs=26.4
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012474 14 GRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHT 50 (463)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (463)
..||+++-.|..| +++|+.|.++|++|+..-.
T Consensus 14 ~~~i~v~G~G~sG-----~a~a~~L~~~G~~V~~~D~ 45 (458)
T PRK01710 14 NKKVAVVGIGVSN-----IPLIKFLVKLGAKVTAFDK 45 (458)
T ss_pred CCeEEEEcccHHH-----HHHHHHHHHCCCEEEEECC
Confidence 4589998888766 4899999999999988654
No 421
>PRK04940 hypothetical protein; Provisional
Probab=27.29 E-value=1.7e+02 Score=25.04 Aligned_cols=31 Identities=3% Similarity=0.073 Sum_probs=26.3
Q ss_pred CceEEEeCCch-hhHHHHHHHcCCCeEEEeCc
Q 012474 113 PVTCLITDAIW-HFAQTVADTLRLPRIVLRTS 143 (463)
Q Consensus 113 ~pD~VI~D~~~-~~~~~~A~~~giP~v~~~~~ 143 (463)
+++++|...+. +++..+|+++|+|.|.+.|.
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPA 91 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPN 91 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCC
Confidence 46788877765 88999999999999998887
No 422
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=27.26 E-value=77 Score=27.77 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=29.9
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012474 17 VILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (463)
Q Consensus 17 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (463)
|++..+|+.|-.-..-.||++|.+++|+|.-++.+
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kd 38 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKD 38 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHhhhhccccchh
Confidence 55566778999999999999999999998877764
No 423
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=27.19 E-value=1.1e+02 Score=29.24 Aligned_cols=33 Identities=18% Similarity=0.184 Sum_probs=28.0
Q ss_pred EEcCCCccCHHHHHHHHHHHHh-CCCeEEEEeCC
Q 012474 19 LFPLPLQGHINPMLQLASILYS-KGFSITIIHTN 51 (463)
Q Consensus 19 ~~~~~~~GH~~p~l~La~~L~~-rGh~Vt~~~~~ 51 (463)
+--+-=+|++-.+-.||+.|++ +|++|++.+.+
T Consensus 5 C~VIDNyGDIGV~WRLArqLa~e~g~~VrLwvDd 38 (371)
T TIGR03837 5 CRVVDNYGDIGVCWRLARQLAAEHGHQVRLWVDD 38 (371)
T ss_pred EEeecCCcchHHHHHHHHHHHHHhCCEEEEEECC
Confidence 3344567999999999999997 69999999986
No 424
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=27.17 E-value=1.6e+02 Score=25.37 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=28.7
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012474 17 VILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (463)
Q Consensus 17 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (463)
|+|+..++.-|-.-+..++++|++.|..|.+++-.
T Consensus 111 vi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G 145 (187)
T cd01452 111 VAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFG 145 (187)
T ss_pred EEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeC
Confidence 77777777777777778999999999999888764
No 425
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=27.05 E-value=74 Score=30.05 Aligned_cols=32 Identities=22% Similarity=0.232 Sum_probs=26.1
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012474 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (463)
|||.++-.|+.| ..+|..|.+.||+|+++...
T Consensus 1 MkI~IiGaGa~G-----~ala~~L~~~g~~V~l~~r~ 32 (326)
T PRK14620 1 MKISILGAGSFG-----TAIAIALSSKKISVNLWGRN 32 (326)
T ss_pred CEEEEECcCHHH-----HHHHHHHHHCCCeEEEEecC
Confidence 678888887765 46788899999999998874
No 426
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=26.98 E-value=1.5e+02 Score=25.10 Aligned_cols=101 Identities=21% Similarity=0.250 Sum_probs=60.2
Q ss_pred CCeEEEEecCCcccCCHHHHHHHHHHHhcCCCceEEEEcCCCCCCCccCCCCchh-HHHHhcCCCceeeccChhhhhcCC
Q 012474 275 AKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLVPGVEWLEPLPKG-FLEMLDGRGHIVKWAPQQEVLAHP 353 (463)
Q Consensus 275 ~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~vpq~~lL~~~ 353 (463)
++.+-.+.+|.++. .+++.++..+.+++..-.... +.. ..+ ....+.+-.++|+.+
T Consensus 36 g~tvgIiG~G~IG~-------~vA~~l~~fG~~V~~~d~~~~----------~~~~~~~------~~~~~~~l~ell~~a 92 (178)
T PF02826_consen 36 GKTVGIIGYGRIGR-------AVARRLKAFGMRVIGYDRSPK----------PEEGADE------FGVEYVSLDELLAQA 92 (178)
T ss_dssp TSEEEEESTSHHHH-------HHHHHHHHTT-EEEEEESSCH----------HHHHHHH------TTEEESSHHHHHHH-
T ss_pred CCEEEEEEEcCCcC-------eEeeeeecCCceeEEecccCC----------hhhhccc------ccceeeehhhhcchh
Confidence 56788888888773 455555567777766544321 111 110 234777889999999
Q ss_pred CCcccccccChhhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeec-C--C--ccCHHHHHHHHH
Q 012474 354 AVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHL-E--R--KFERREIETAIR 417 (463)
Q Consensus 354 ~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l-~--~--~~t~~~l~~~i~ 417 (463)
++ ++.|.-.+. ...+..|++.+.. ++=|..+ + + -++.++|.++++
T Consensus 93 Di--v~~~~plt~----------------~T~~li~~~~l~~-mk~ga~lvN~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 93 DI--VSLHLPLTP----------------ETRGLINAEFLAK-MKPGAVLVNVARGELVDEDALLDALE 142 (178)
T ss_dssp SE--EEE-SSSST----------------TTTTSBSHHHHHT-STTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred hh--hhhhhcccc----------------ccceeeeeeeeec-cccceEEEeccchhhhhhhHHHHHHh
Confidence 99 888854321 1356677888888 7766444 2 2 567777777764
No 427
>PRK03094 hypothetical protein; Provisional
Probab=26.79 E-value=60 Score=23.41 Aligned_cols=20 Identities=15% Similarity=0.446 Sum_probs=16.5
Q ss_pred HHHHHHHHHhCCCeEEEEeC
Q 012474 31 MLQLASILYSKGFSITIIHT 50 (463)
Q Consensus 31 ~l~La~~L~~rGh~Vt~~~~ 50 (463)
+..|.+.|.++||+|.=+..
T Consensus 10 Ls~i~~~L~~~GYeVv~l~~ 29 (80)
T PRK03094 10 LTDVQQALKQKGYEVVQLRS 29 (80)
T ss_pred cHHHHHHHHHCCCEEEecCc
Confidence 34689999999999987655
No 428
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=26.75 E-value=1.2e+02 Score=24.99 Aligned_cols=37 Identities=35% Similarity=0.535 Sum_probs=29.8
Q ss_pred CcEEEEEcCC-------CccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012474 14 GRRVILFPLP-------LQGHINPMLQLASILYSKGFSITIIHT 50 (463)
Q Consensus 14 ~~~il~~~~~-------~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (463)
+.|++++..| +..|+--++.=|++|+++|.+..++..
T Consensus 43 GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iicvS 86 (171)
T KOG0541|consen 43 GKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIICVS 86 (171)
T ss_pred CceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEEEe
Confidence 4577776655 457999999999999999988777665
No 429
>PRK06835 DNA replication protein DnaC; Validated
Probab=26.73 E-value=1.1e+02 Score=29.03 Aligned_cols=38 Identities=13% Similarity=0.138 Sum_probs=31.5
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012474 14 GRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (463)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (463)
...++|+..+|.|-..=..++|++|.++|+.|.|++..
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~ 220 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTAD 220 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHH
Confidence 35677877778887777889999999999999998873
No 430
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=26.70 E-value=1.3e+02 Score=24.55 Aligned_cols=39 Identities=10% Similarity=0.070 Sum_probs=29.9
Q ss_pred CCeEEEEecCCcccCCHHHHHHHHHHHhcCCCceEEEEcC
Q 012474 275 AKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRP 314 (463)
Q Consensus 275 ~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~v~~~~~ 314 (463)
...+|++++||-.....+.++.+++.+. .+.+++++...
T Consensus 50 ~~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~~ 88 (150)
T cd01840 50 LRKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNPH 88 (150)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEECC
Confidence 3468999999988877888888888885 35677776543
No 431
>PRK05636 replicative DNA helicase; Provisional
Probab=26.64 E-value=1.4e+02 Score=30.43 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=29.4
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHH-hCCCeEEEEeCCC
Q 012474 16 RVILFPLPLQGHINPMLQLASILY-SKGFSITIIHTNF 52 (463)
Q Consensus 16 ~il~~~~~~~GH~~p~l~La~~L~-~rGh~Vt~~~~~~ 52 (463)
=+++...|+.|-..-.+.+|...+ +.|..|.|++.+-
T Consensus 267 Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEM 304 (505)
T PRK05636 267 MIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEM 304 (505)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeC
Confidence 356677788899988999998876 4589999998763
No 432
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=26.58 E-value=2.9e+02 Score=24.19 Aligned_cols=41 Identities=15% Similarity=0.174 Sum_probs=33.7
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012474 13 KGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFN 53 (463)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 53 (463)
++|=|+|--.-+.|-..-.-.|.+.|.++|.+|++.-.+..
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~~ 42 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPGG 42 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence 45667777777889999999999999999999888777543
No 433
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=26.54 E-value=1.7e+02 Score=24.95 Aligned_cols=39 Identities=13% Similarity=0.265 Sum_probs=33.3
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012474 13 KGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (463)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (463)
++|-|+|.-.++.|=-.-+..|+++|..+|+.|.+...+
T Consensus 2 ~g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~ 40 (195)
T TIGR00041 2 RGMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTREP 40 (195)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 467788888889999999999999999999999876553
No 434
>PRK05114 hypothetical protein; Provisional
Probab=26.46 E-value=2e+02 Score=19.14 Aligned_cols=30 Identities=10% Similarity=0.218 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHh
Q 012474 428 MRERIMHLKEKLELSLLEAGSSYQSLERLVDHIL 461 (463)
Q Consensus 428 ~~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 461 (463)
-.++++++++.+. +|=|+..|+.-+.+.|.
T Consensus 13 QQ~AVErIq~LMa----qGmSsgEAI~~VA~eiR 42 (59)
T PRK05114 13 QQKAVERIQELMA----QGMSSGEAIALVAEELR 42 (59)
T ss_pred HHHHHHHHHHHHH----ccccHHHHHHHHHHHHH
Confidence 3455556666555 56666666665555543
No 435
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=26.43 E-value=5.8e+02 Score=24.47 Aligned_cols=47 Identities=15% Similarity=0.170 Sum_probs=32.3
Q ss_pred HHHHHHhCCCCCCCceEEEeCCchhhH-HHHHHHcCCCeEEEeCchhHHHHHH
Q 012474 100 CLAKLISNGDQEEPVTCLITDAIWHFA-QTVADTLRLPRIVLRTSSISSFLAF 151 (463)
Q Consensus 100 ~l~~l~~~~~~~~~pD~VI~D~~~~~~-~~~A~~~giP~v~~~~~~~~~~~~~ 151 (463)
.++++.+ ..||+-|=...++.. ..++...++|++.+...|....-+.
T Consensus 142 ~~Eai~r-----~~Pdi~IDtMGY~fs~p~~r~l~~~~V~aYvHYP~iS~DML 189 (465)
T KOG1387|consen 142 AFEAIIR-----FPPDIFIDTMGYPFSYPIFRRLRRIPVVAYVHYPTISTDML 189 (465)
T ss_pred HHHHHHh-----CCchheEecCCCcchhHHHHHHccCceEEEEecccccHHHH
Confidence 4666776 789988866544333 5566678999999888876655443
No 436
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=26.38 E-value=1.7e+02 Score=26.93 Aligned_cols=40 Identities=15% Similarity=0.178 Sum_probs=32.6
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012474 14 GRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFN 53 (463)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 53 (463)
...|+|+..+|-|-.--...||..|.++|++|.+++.+.+
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 3445556555779999999999999999999999998754
No 437
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=26.33 E-value=1.2e+02 Score=23.78 Aligned_cols=30 Identities=17% Similarity=0.379 Sum_probs=26.0
Q ss_pred CccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012474 24 LQGHINPMLQLASILYSKGFSITIIHTNFN 53 (463)
Q Consensus 24 ~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 53 (463)
..|+...++.+++.++++|..|..+|....
T Consensus 62 ~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~ 91 (131)
T PF01380_consen 62 YSGETRELIELLRFAKERGAPVILITSNSE 91 (131)
T ss_dssp SSSTTHHHHHHHHHHHHTTSEEEEEESSTT
T ss_pred ccccchhhhhhhHHHHhcCCeEEEEeCCCC
Confidence 557889999999999999999999998544
No 438
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=26.23 E-value=8.6e+02 Score=27.60 Aligned_cols=40 Identities=18% Similarity=0.262 Sum_probs=30.8
Q ss_pred CCcEEEEEcCCCc--cC----HHHHHHHHHHHHhCCCeEEEEeCCC
Q 012474 13 KGRRVILFPLPLQ--GH----INPMLQLASILYSKGFSITIIHTNF 52 (463)
Q Consensus 13 ~~~~il~~~~~~~--GH----~~p~l~La~~L~~rGh~Vt~~~~~~ 52 (463)
.++||+++-.+.. |. =+-++.++++|++.||+|.++...+
T Consensus 554 ~~kkvLIlG~G~~rig~~~efdy~~v~~~~aLk~~G~~vI~vn~np 599 (1068)
T PRK12815 554 EKKKVLILGSGPIRIGQGIEFDYSSVHAAFALKKEGYETIMINNNP 599 (1068)
T ss_pred CCceEEEecccccccccccccchhHHHHHHHHHHcCCEEEEEeCCc
Confidence 5678888877642 32 2478899999999999999888754
No 439
>PF12617 LdpA_C: Iron-Sulfur binding protein C terminal; InterPro: IPR021039 This entry represents the C-terminal region of the iron-sulphur protein LdpA (Light dependent period), which is found in phototropic organisms. LdpA was originally identified in cyanobacteria where it is involved in light-dependent modulation of the circadian clock. The presence of iron-sulphur clusters on LdpA suggests that it may modulate the circadian clock as an indirect function of light intensity by sensing changes in cellular physiology [].
Probab=26.18 E-value=1.3e+02 Score=25.54 Aligned_cols=39 Identities=10% Similarity=0.084 Sum_probs=28.8
Q ss_pred eEEEEecCCcccCCHHHHHHHHHHHhcCCCceEEEEcCCC
Q 012474 277 SVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGL 316 (463)
Q Consensus 277 ~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~ 316 (463)
+.|-||+|-. ..-.+.+..+.+.+...+.+.||.+.+..
T Consensus 38 k~lAiSc~~~-~~li~~L~~~~~~l~~l~~~~iWQ~DGRP 76 (183)
T PF12617_consen 38 KLLAISCPDG-EGLIDYLWQLYEILRPLPCPLIWQLDGRP 76 (183)
T ss_pred cEEEEECCCC-HHHHHHHHHHHHHHhccCCCeeEeeCCcc
Confidence 4899999873 22334566677788888899999998864
No 440
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=26.04 E-value=93 Score=29.52 Aligned_cols=45 Identities=16% Similarity=0.186 Sum_probs=28.5
Q ss_pred hcCCCCcccccccChhhHHHHHhhCCceeccccccchhhhHHHHHHHhh-ceeecCC
Q 012474 350 LAHPAVGGFWTHNGWNSTLESICEGVPMICQPCFGDQLVNARYVSHVWR-VGLHLER 405 (463)
Q Consensus 350 L~~~~~~~~I~hgG~~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G-~G~~l~~ 405 (463)
|...+. .++|||+.... +..-|-.++|+ +..+.+++. | +|-.-+.
T Consensus 266 l~~~~~--~~~HgGYD~~~---an~D~N~v~Pl-----D~LreL~~E-G~IG~l~~~ 311 (349)
T PF07355_consen 266 LSSDDY--MTIHGGYDPAY---ANEDPNRVFPL-----DRLRELEKE-GVIGSLAPY 311 (349)
T ss_pred CCccce--EeeccccChhH---hccCCCeeeeH-----HHHHHHHHc-CCcccccCe
Confidence 555566 99999997654 34778888885 335556664 4 3443333
No 441
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=26.04 E-value=4.2e+02 Score=24.30 Aligned_cols=34 Identities=21% Similarity=0.190 Sum_probs=27.5
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCC-CeEEEEeCC
Q 012474 13 KGRRVILFPLPLQGHINPMLQLASILYSKG-FSITIIHTN 51 (463)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rG-h~Vt~~~~~ 51 (463)
+..+|+++-.|+.| ..+|+.|++.| .++|++-.+
T Consensus 29 ~~s~VlVvG~GGVG-----s~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 29 ADAHICVVGIGGVG-----SWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred cCCCEEEECcCHHH-----HHHHHHHHHcCCCEEEEEeCC
Confidence 47789999888766 45789999999 788888764
No 442
>PRK06180 short chain dehydrogenase; Provisional
Probab=25.96 E-value=1.3e+02 Score=27.52 Aligned_cols=34 Identities=12% Similarity=-0.013 Sum_probs=23.9
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012474 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (463)
++.++++.++ |.+ -..+++.|+++||+|+.+...
T Consensus 4 ~~~vlVtGas-ggi--G~~la~~l~~~G~~V~~~~r~ 37 (277)
T PRK06180 4 MKTWLITGVS-SGF--GRALAQAALAAGHRVVGTVRS 37 (277)
T ss_pred CCEEEEecCC-ChH--HHHHHHHHHhCcCEEEEEeCC
Confidence 3445555544 544 577889999999999988753
No 443
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=25.87 E-value=84 Score=23.96 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhCCCeEEEEeC
Q 012474 29 NPMLQLASILYSKGFSITIIHT 50 (463)
Q Consensus 29 ~p~l~La~~L~~rGh~Vt~~~~ 50 (463)
.|.+.|+++|.++|.+|.+.=+
T Consensus 17 Sp~~~l~~~L~~~g~~V~~~DP 38 (106)
T PF03720_consen 17 SPALELIEELKERGAEVSVYDP 38 (106)
T ss_dssp -HHHHHHHHHHHTT-EEEEE-T
T ss_pred CHHHHHHHHHHHCCCEEEEECC
Confidence 6899999999999999887766
No 444
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=25.78 E-value=1.2e+02 Score=29.55 Aligned_cols=42 Identities=19% Similarity=0.184 Sum_probs=33.2
Q ss_pred CCCcEEEEEcCC--CccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012474 12 KKGRRVILFPLP--LQGHINPMLQLASILYSKGFSITIIHTNFN 53 (463)
Q Consensus 12 ~~~~~il~~~~~--~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 53 (463)
..+++++.+... |.|-..-...||..|+.+|++|.++=.+++
T Consensus 101 g~~~~vI~v~n~KGGvGKTT~a~nLA~~La~~G~rVLlID~DpQ 144 (387)
T TIGR03453 101 GEHLQVIAVTNFKGGSGKTTTAAHLAQYLALRGYRVLAIDLDPQ 144 (387)
T ss_pred CCCceEEEEEccCCCcCHHHHHHHHHHHHHhcCCCEEEEecCCC
Confidence 356676665544 669999999999999999999999976543
No 445
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=25.76 E-value=86 Score=28.50 Aligned_cols=38 Identities=18% Similarity=0.309 Sum_probs=26.8
Q ss_pred cEEEEEcCCC---ccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012474 15 RRVILFPLPL---QGHINPMLQLASILYSKGFSITIIHTNF 52 (463)
Q Consensus 15 ~~il~~~~~~---~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 52 (463)
||.+|++.|- .|-=.-...|+.-|..||+.|+.+--++
T Consensus 1 tKyIfVtGGV~SglGKGi~aaSig~lLk~~G~~V~~~K~DP 41 (276)
T PF06418_consen 1 TKYIFVTGGVVSGLGKGITAASIGRLLKSRGYKVTMIKIDP 41 (276)
T ss_dssp -EEEEEEE-SSSSSSHHHHHHHHHHHHHCTT--EEEEEEE-
T ss_pred CcEEEEeCCccccccHHHHHHHHHHHHHhCCeeeeeeeecc
Confidence 5788888773 3555678899999999999999987654
No 446
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=25.72 E-value=5.8e+02 Score=24.58 Aligned_cols=15 Identities=20% Similarity=0.189 Sum_probs=12.8
Q ss_pred cCHHHHHHHHHHHhc
Q 012474 407 FERREIETAIRRVTV 421 (463)
Q Consensus 407 ~t~~~l~~~i~~~l~ 421 (463)
.++++|.+++++++.
T Consensus 337 p~~~~i~~a~~~~~~ 351 (356)
T PLN02683 337 PQVEDIVRAAKRACY 351 (356)
T ss_pred CCHHHHHHHHHHHHH
Confidence 488999999999885
No 447
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=25.60 E-value=62 Score=23.37 Aligned_cols=22 Identities=14% Similarity=0.320 Sum_probs=18.2
Q ss_pred HHHHHHHHHhCCCeEEEEeCCC
Q 012474 31 MLQLASILYSKGFSITIIHTNF 52 (463)
Q Consensus 31 ~l~La~~L~~rGh~Vt~~~~~~ 52 (463)
+-.+.+.|.++||+|+=+....
T Consensus 10 Ls~v~~~L~~~GyeVv~l~~~~ 31 (80)
T PF03698_consen 10 LSNVKEALREKGYEVVDLENEQ 31 (80)
T ss_pred chHHHHHHHHCCCEEEecCCcc
Confidence 4578999999999999887643
No 448
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=25.38 E-value=6.6e+02 Score=26.70 Aligned_cols=51 Identities=16% Similarity=0.187 Sum_probs=29.4
Q ss_pred cChhhHH-HHHhh-C-----Cceec--ccc-ccchhhhHHHHHHHhhceeecCCccCHHHHHHHHHHHhc
Q 012474 362 NGWNSTL-ESICE-G-----VPMIC--QPC-FGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTV 421 (463)
Q Consensus 362 gG~~s~~-eal~~-G-----vP~l~--~P~-~~DQ~~na~rv~~~~G~G~~l~~~~t~~~l~~~i~~~l~ 421 (463)
||+|+.. |.+.. | +|+.. +|- +.++.......++. .+|.+.|.+.|.+++.
T Consensus 607 GG~Gs~va~~l~~~~~~~~~~~v~~~Gi~d~F~~~G~~~~L~~~~---------GL~~e~I~~~i~~~l~ 667 (677)
T PLN02582 607 GGFGSHVAQFMALDGLLDGKLKWRPLVLPDRYIDHGAPADQLAEA---------GLTPSHIAATVLNVLG 667 (677)
T ss_pred CcHHHHHHHHHHhcCCccCCceeEEecCCCcccCcCCHHHHHHHh---------CcCHHHHHHHHHHHHh
Confidence 8888744 33322 2 34432 332 34444444544443 5889999999988874
No 449
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=25.37 E-value=1.4e+02 Score=29.87 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=31.4
Q ss_pred cEEEEEcCC---CccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012474 15 RRVILFPLP---LQGHINPMLQLASILYSKGFSITIIHTNFN 53 (463)
Q Consensus 15 ~~il~~~~~---~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 53 (463)
||.+|++.| +.|-=...-.|+.-|.+||++||.+--++.
T Consensus 1 ~KyIfVTGGVvSslGKGi~aaSlg~lLk~rG~~Vt~~KlDPY 42 (533)
T COG0504 1 TKYIFVTGGVVSSLGKGITAASLGRLLKARGLKVTIQKLDPY 42 (533)
T ss_pred CeEEEEeCCeecccccHHHHHHHHHHHHHCCceEEEEecccc
Confidence 577888887 446667888999999999999999876543
No 450
>CHL00175 minD septum-site determining protein; Validated
Probab=25.37 E-value=1.4e+02 Score=27.44 Aligned_cols=41 Identities=15% Similarity=0.276 Sum_probs=31.8
Q ss_pred CCcEEEEEcC--CCccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012474 13 KGRRVILFPL--PLQGHINPMLQLASILYSKGFSITIIHTNFN 53 (463)
Q Consensus 13 ~~~~il~~~~--~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 53 (463)
+.+|++.+.. |+-|=..-...||..|+++|++|.++-.+..
T Consensus 13 ~~~~vi~v~s~KGGvGKTt~a~nLA~~La~~g~~vlliD~D~~ 55 (281)
T CHL00175 13 TMSRIIVITSGKGGVGKTTTTANLGMSIARLGYRVALIDADIG 55 (281)
T ss_pred CCceEEEEEcCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 3445666655 4668899999999999999999998866543
No 451
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=25.35 E-value=68 Score=30.04 Aligned_cols=33 Identities=15% Similarity=0.194 Sum_probs=26.9
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012474 14 GRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (463)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (463)
.|||+++-.|+.|=+ +|-.|.+.||+|+++...
T Consensus 2 ~m~I~IiGaGaiG~~-----~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSL-----WACRLARAGLPVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHH-----HHHHHHhCCCCeEEEEec
Confidence 589999999998754 455678889999999874
No 452
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=25.31 E-value=87 Score=19.63 Aligned_cols=26 Identities=15% Similarity=0.254 Sum_probs=17.2
Q ss_pred CHHHHHHHHHHHhccchHHHHHHHHHHH
Q 012474 408 ERREIETAIRRVTVEAEGQEMRERIMHL 435 (463)
Q Consensus 408 t~~~l~~~i~~~l~~~~~~~~~~~a~~~ 435 (463)
|++.|..||..+.++. -++++.|++.
T Consensus 1 tee~l~~Ai~~v~~g~--~S~r~AA~~y 26 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGK--MSIRKAAKKY 26 (45)
T ss_dssp -HHHHHHHHHHHHTTS--S-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhCC--CCHHHHHHHH
Confidence 5788999998888762 3566666554
No 453
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=25.19 E-value=1e+02 Score=27.50 Aligned_cols=32 Identities=22% Similarity=0.064 Sum_probs=27.8
Q ss_pred CCCccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012474 22 LPLQGHINPMLQLASILYSKGFSITIIHTNFN 53 (463)
Q Consensus 22 ~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 53 (463)
-|+.|-..-...||..|+++|++|.++-.+.+
T Consensus 10 KGGvGKTt~a~nla~~la~~g~~VlliD~D~q 41 (246)
T TIGR03371 10 KGGVGKTTLTANLASALKLLGEPVLAIDLDPQ 41 (246)
T ss_pred CCCccHHHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence 45779999999999999999999999987653
No 454
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=25.17 E-value=93 Score=30.17 Aligned_cols=41 Identities=20% Similarity=0.281 Sum_probs=30.2
Q ss_pred hhhhccCCCCcEEEEEc-CCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012474 5 KESNVQQKKGRRVILFP-LPLQGHINPMLQLASILYSKGFSITIIHT 50 (463)
Q Consensus 5 ~~~~~~~~~~~~il~~~-~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (463)
.+........++|+++- .|..|. .+|+.|.++||+|+++..
T Consensus 89 ~~~~~~~~~~~~I~IiGG~GlmG~-----slA~~l~~~G~~V~~~d~ 130 (374)
T PRK11199 89 KGFKTLNPDLRPVVIVGGKGQLGR-----LFAKMLTLSGYQVRILEQ 130 (374)
T ss_pred hcccccCcccceEEEEcCCChhhH-----HHHHHHHHCCCeEEEeCC
Confidence 33333444568899987 666664 688999999999998875
No 455
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=25.11 E-value=51 Score=30.57 Aligned_cols=34 Identities=6% Similarity=-0.009 Sum_probs=0.0
Q ss_pred ChhhhhcCCCCcccccccChhhHHHHHhh----CCceecc
Q 012474 345 PQQEVLAHPAVGGFWTHNGWNSTLESICE----GVPMICQ 380 (463)
Q Consensus 345 pq~~lL~~~~~~~~I~hgG~~s~~eal~~----GvP~l~~ 380 (463)
+..++...+++ +|+-||-||+..|+.. ++|++.+
T Consensus 57 ~~~~~~~~~Dl--vi~iGGDGT~L~aa~~~~~~~~PilGI 94 (287)
T PRK14077 57 GLDELFKISDF--LISLGGDGTLISLCRKAAEYDKFVLGI 94 (287)
T ss_pred chhhcccCCCE--EEEECCCHHHHHHHHHhcCCCCcEEEE
No 456
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=24.95 E-value=3.9e+02 Score=22.43 Aligned_cols=91 Identities=7% Similarity=0.036 Sum_probs=54.0
Q ss_pred HHHHHHHHHhCCCeEEEEeCCCCC------CCCCCCCCceEEeCCCCCCCcccccccHHHHHHHHHHhcCchHHHHHHHH
Q 012474 31 MLQLASILYSKGFSITIIHTNFNS------PNPSNYPHFSFNSISESLWESEVSTENAISLLTVLNDKCVVPFQDCLAKL 104 (463)
Q Consensus 31 ~l~La~~L~~rGh~Vt~~~~~~~~------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l 104 (463)
+..|.+...++|..|.|+...... .....++++.++...++.- -.....+.++.+
T Consensus 37 ~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f-------------------~~~~~~~i~~~I 97 (172)
T PF03808_consen 37 FPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYF-------------------DEEEEEAIINRI 97 (172)
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCC-------------------ChhhHHHHHHHH
Confidence 455666666779999999886322 1123457777775543321 011222355555
Q ss_pred HhCCCCCCCceEEEeCCch----hhHHHHHHHcCCCeEEEeCchhH
Q 012474 105 ISNGDQEEPVTCLITDAIW----HFAQTVADTLRLPRIVLRTSSIS 146 (463)
Q Consensus 105 ~~~~~~~~~pD~VI~D~~~----~~~~~~A~~~giP~v~~~~~~~~ 146 (463)
.+ .+||+|++-.-. .+.....+.++.+ +.+..+.+.
T Consensus 98 ~~-----~~pdiv~vglG~PkQE~~~~~~~~~l~~~-v~i~vG~~~ 137 (172)
T PF03808_consen 98 NA-----SGPDIVFVGLGAPKQERWIARHRQRLPAG-VIIGVGGAF 137 (172)
T ss_pred HH-----cCCCEEEEECCCCHHHHHHHHHHHHCCCC-EEEEECchh
Confidence 55 679999988655 4556667777777 555555443
No 457
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=24.87 E-value=3e+02 Score=27.03 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=20.9
Q ss_pred CCceEEEeCCchhhHHHHHHHcCCCeEEE
Q 012474 112 EPVTCLITDAIWHFAQTVADTLRLPRIVL 140 (463)
Q Consensus 112 ~~pD~VI~D~~~~~~~~~A~~~giP~v~~ 140 (463)
.+||++|.... ...+|+++|+|++..
T Consensus 355 ~~pDl~ig~s~---~~~~a~~~gip~~~~ 380 (410)
T cd01968 355 KKADLLVAGGK---ERYLALKLGIPFCDI 380 (410)
T ss_pred cCCCEEEECCc---chhhHHhcCCCEEEc
Confidence 57999999954 457899999999854
No 458
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=24.81 E-value=94 Score=29.63 Aligned_cols=35 Identities=14% Similarity=0.353 Sum_probs=30.9
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 012474 20 FPLPLQGHINPMLQLASILYSKGFSITIIHTNFNS 54 (463)
Q Consensus 20 ~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 54 (463)
++.|++|-.--.+.|++.|.++|++|.+++-.+..
T Consensus 64 itvGGTGKTP~v~~La~~l~~~G~~~~IlSRGYg~ 98 (338)
T PRK01906 64 VTVGGTGKTPTVIALVDALRAAGFTPGVVSRGYGA 98 (338)
T ss_pred ccCCCCChHHHHHHHHHHHHHcCCceEEEecCCCC
Confidence 56788899999999999999999999999986544
No 459
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=24.71 E-value=1.2e+02 Score=27.57 Aligned_cols=32 Identities=13% Similarity=0.107 Sum_probs=24.9
Q ss_pred CCceEEEeCCch------hhHHHHHHHcCCCeEEEeCc
Q 012474 112 EPVTCLITDAIW------HFAQTVADTLRLPRIVLRTS 143 (463)
Q Consensus 112 ~~pD~VI~D~~~------~~~~~~A~~~giP~v~~~~~ 143 (463)
..||+||+...+ .-+..+|+.+|+|++.+...
T Consensus 111 ~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 111 AGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred hCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 349999976543 34678999999999987765
No 460
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=24.64 E-value=7.3e+02 Score=25.06 Aligned_cols=41 Identities=5% Similarity=-0.119 Sum_probs=35.2
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012474 12 KKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNF 52 (463)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~ 52 (463)
.++.-+++..-|+.|-..-.++++.+.+++|..|.+++.+.
T Consensus 261 ~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eE 301 (484)
T TIGR02655 261 FKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEE 301 (484)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeC
Confidence 34566778888899999999999999999999999999864
No 461
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=24.56 E-value=1.2e+02 Score=28.94 Aligned_cols=33 Identities=18% Similarity=0.170 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012474 14 GRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHT 50 (463)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (463)
.++|++... .|.+- ..|++.|.++||+|+.+.-
T Consensus 4 ~k~ilItGa--tG~IG--~~l~~~L~~~G~~V~~~~r 36 (349)
T TIGR02622 4 GKKVLVTGH--TGFKG--SWLSLWLLELGAEVYGYSL 36 (349)
T ss_pred CCEEEEECC--CChhH--HHHHHHHHHCCCEEEEEeC
Confidence 356555443 23332 6789999999999987764
No 462
>PRK09271 flavodoxin; Provisional
Probab=24.55 E-value=1.4e+02 Score=24.74 Aligned_cols=36 Identities=17% Similarity=0.272 Sum_probs=28.0
Q ss_pred cEEEEEcCCCccCHHHH-HHHHHHHHhCCCeEEEEeC
Q 012474 15 RRVILFPLPLQGHINPM-LQLASILYSKGFSITIIHT 50 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p~-l~La~~L~~rGh~Vt~~~~ 50 (463)
|||+++=...+|+.--+ -.|++.|.++|++|.+.-.
T Consensus 1 mkv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~~~~~ 37 (160)
T PRK09271 1 MRILLAYASLSGNTREVAREIEERCEEAGHEVDWVET 37 (160)
T ss_pred CeEEEEEEcCCchHHHHHHHHHHHHHhCCCeeEEEec
Confidence 78888888888988764 4567888889999986543
No 463
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=24.42 E-value=2.1e+02 Score=21.32 Aligned_cols=38 Identities=8% Similarity=0.031 Sum_probs=26.5
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012474 13 KGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHT 50 (463)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (463)
+..||++++..|.|--.-...+-+.+.++|.++.+-..
T Consensus 2 ~~~~ILl~C~~G~sSS~l~~k~~~~~~~~gi~~~v~a~ 39 (95)
T TIGR00853 2 NETNILLLCAAGMSTSLLVNKMNKAAEEYGVPVKIAAG 39 (95)
T ss_pred CccEEEEECCCchhHHHHHHHHHHHHHHCCCcEEEEEe
Confidence 45689888888775333446666667778998776655
No 464
>PRK03202 6-phosphofructokinase; Provisional
Probab=24.35 E-value=2.4e+02 Score=26.71 Aligned_cols=36 Identities=19% Similarity=0.196 Sum_probs=29.0
Q ss_pred hhcCCCCcccccccChhhHHHHHh---hCCceecccccc
Q 012474 349 VLAHPAVGGFWTHNGWNSTLESIC---EGVPMICQPCFG 384 (463)
Q Consensus 349 lL~~~~~~~~I~hgG~~s~~eal~---~GvP~l~~P~~~ 384 (463)
-|..-.++.+|.=||.+|+.-|.. +++|++++|-.-
T Consensus 88 ~l~~~~Id~Li~IGGd~s~~~a~~L~e~~i~vigiPkTI 126 (320)
T PRK03202 88 NLKKLGIDALVVIGGDGSYMGAKRLTEHGIPVIGLPGTI 126 (320)
T ss_pred HHHHcCCCEEEEeCChHHHHHHHHHHhcCCcEEEecccc
Confidence 455567888999999999877754 599999999753
No 465
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.08 E-value=61 Score=29.77 Aligned_cols=33 Identities=15% Similarity=0.129 Sum_probs=25.1
Q ss_pred hhhhcCCCCcccccccChhhHHHHHh----hCCceeccc
Q 012474 347 QEVLAHPAVGGFWTHNGWNSTLESIC----EGVPMICQP 381 (463)
Q Consensus 347 ~~lL~~~~~~~~I~hgG~~s~~eal~----~GvP~l~~P 381 (463)
.++...+++ +|+=||=||+..|.. .++|++.+-
T Consensus 37 ~~~~~~~d~--vi~iGGDGT~L~aa~~~~~~~~PilgIn 73 (272)
T PRK02231 37 EEIGQRAQL--AIVIGGDGNMLGRARVLAKYDIPLIGIN 73 (272)
T ss_pred HHhCcCCCE--EEEECCcHHHHHHHHHhccCCCcEEEEe
Confidence 444445677 999999999998855 367887765
No 466
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=24.03 E-value=1.3e+02 Score=29.25 Aligned_cols=11 Identities=36% Similarity=0.782 Sum_probs=9.1
Q ss_pred hCCceeccccc
Q 012474 373 EGVPMICQPCF 383 (463)
Q Consensus 373 ~GvP~l~~P~~ 383 (463)
.++|++.+|..
T Consensus 121 ~~~P~i~IPTt 131 (375)
T cd08194 121 PGLPLIAIPTT 131 (375)
T ss_pred CCCCEEEECCC
Confidence 36899999975
No 467
>PRK12829 short chain dehydrogenase; Provisional
Probab=24.01 E-value=1.5e+02 Score=26.47 Aligned_cols=35 Identities=17% Similarity=0.170 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012474 12 KKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHT 50 (463)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (463)
.+.+++++. |+.|.+ -..+++.|.++||+|+.+.-
T Consensus 9 ~~~~~vlIt--Ga~g~i--G~~~a~~L~~~g~~V~~~~r 43 (264)
T PRK12829 9 LDGLRVLVT--GGASGI--GRAIAEAFAEAGARVHVCDV 43 (264)
T ss_pred cCCCEEEEe--CCCCcH--HHHHHHHHHHCCCEEEEEeC
Confidence 345565554 333555 47789999999999887775
No 468
>PRK07773 replicative DNA helicase; Validated
Probab=23.98 E-value=2e+02 Score=31.75 Aligned_cols=37 Identities=16% Similarity=0.201 Sum_probs=30.8
Q ss_pred EEEEEcCCCccCHHHHHHHHHHHHhC-CCeEEEEeCCC
Q 012474 16 RVILFPLPLQGHINPMLQLASILYSK-GFSITIIHTNF 52 (463)
Q Consensus 16 ~il~~~~~~~GH~~p~l~La~~L~~r-Gh~Vt~~~~~~ 52 (463)
=+++..-|+.|-..-.+.+|...+.+ |..|.|++-+.
T Consensus 219 livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEm 256 (886)
T PRK07773 219 LIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEM 256 (886)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 36777778999999999999998755 88999998763
No 469
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=23.92 E-value=86 Score=29.17 Aligned_cols=30 Identities=13% Similarity=0.212 Sum_probs=22.3
Q ss_pred cEEEEEcCCCc--cCHHHHHHHHHHHHhCCCeEEEEeC
Q 012474 15 RRVILFPLPLQ--GHINPMLQLASILYSKGFSITIIHT 50 (463)
Q Consensus 15 ~~il~~~~~~~--GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (463)
|+|++.-..++ || .+.+|.++||+|+++-.
T Consensus 1 ~~iLVtGGAGYIGSH------tv~~Ll~~G~~vvV~DN 32 (329)
T COG1087 1 MKVLVTGGAGYIGSH------TVRQLLKTGHEVVVLDN 32 (329)
T ss_pred CeEEEecCcchhHHH------HHHHHHHCCCeEEEEec
Confidence 56777665555 45 46788999999999865
No 470
>PF02233 PNTB: NAD(P) transhydrogenase beta subunit; InterPro: IPR012136 NAD(P) transhydrogenase catalyses the transfer of reducing equivalents between NAD(H) and NADP(H), coupled to the translocation of protons across a membrane []. It is an integral membrane protein found in most organisms except for yeasts, plants and some bacterial species. In bacterial species it is located in the cytoplasmic membrane, while in mitochondria it is located in the inner membrane. Under most physiological conditions this enzyme synthesises NADPH, driven by consumption of the proton electrochemical gradient. The resulting NADPH is subsequently used for biosynthetic reactions or the reduction of glutathione. The global structure of this enzyme is similar in all organisms, consisting of three distinct domains, though the polypeptide composition can vary. Domain I binds NAD(+)/NADH, domain II is a hydrophobic membrane-spanning domain, and domain III binds NADP(+)/NADPH. Domain I is composed of two subdomains, both of which form a Rossman fold, while domain III consists of a single Rossman fold where the NADP(+) is flipped relative to the normal orientation of bound nucleotides within the Rossman fold [, , ]. Several residues within these domains are thought to make functionally important interdomain contacts for hydride transfer between these domains []. Proton translocation occurs through domain II and is thought to induce conformational changes which are transmitted across domain III to the site of hydride transfer between domains I and III. This entry represents the beta subunit found in bacterial two-subunit NADP(H) transhydrogenases. This subunit forms domain III and part of the transmembrane domain II. ; GO: 0008750 NAD(P)+ transhydrogenase (AB-specific) activity, 0050661 NADP binding, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1PT9_A 1DJL_A 1U31_B 2BRU_C 1PTJ_C 1HZZ_C 2FRD_C 2FSV_C 1XLT_C 1U2G_C ....
Probab=23.88 E-value=97 Score=30.77 Aligned_cols=40 Identities=15% Similarity=0.265 Sum_probs=30.3
Q ss_pred CCcEEEEEcCCCc---cCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012474 13 KGRRVILFPLPLQ---GHINPMLQLASILYSKGFSITIIHTNF 52 (463)
Q Consensus 13 ~~~~il~~~~~~~---GH~~p~l~La~~L~~rGh~Vt~~~~~~ 52 (463)
.+.||+++|.-+. -=.....+|++.|.++|.+|.|..++-
T Consensus 306 ~A~~VvIVPGYGmAvAqAQ~~v~el~~~L~~~G~~V~faIHPV 348 (463)
T PF02233_consen 306 NAKKVVIVPGYGMAVAQAQHAVAELADLLEERGVEVKFAIHPV 348 (463)
T ss_dssp H-SEEEEEESHHHHHCTTHHHHHHHHHHHHHTT-EEEEEE-TT
T ss_pred hcCceEEecCchHHHHHHHHHHHHHHHHHHhCCCEEEEEeccc
Confidence 3678999987644 246689999999999999999999953
No 471
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=23.87 E-value=2.4e+02 Score=27.17 Aligned_cols=10 Identities=30% Similarity=0.673 Sum_probs=9.0
Q ss_pred CCceeccccc
Q 012474 374 GVPMICQPCF 383 (463)
Q Consensus 374 GvP~l~~P~~ 383 (463)
++|++.+|..
T Consensus 122 ~~p~i~VPTt 131 (370)
T cd08551 122 ALPLIAIPTT 131 (370)
T ss_pred CCCEEEecCC
Confidence 7999999975
No 472
>COG1422 Predicted membrane protein [Function unknown]
Probab=23.87 E-value=3.7e+02 Score=23.29 Aligned_cols=82 Identities=10% Similarity=0.171 Sum_probs=51.0
Q ss_pred hhHHHHHhhCCceeccccccchhhhHHHHHHHhhceeecCCccCHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHHH
Q 012474 365 NSTLESICEGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVEAE-GQEMRERIMHLKEKLELSL 443 (463)
Q Consensus 365 ~s~~eal~~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~t~~~l~~~i~~~l~~~~-~~~~~~~a~~~~~~~~~~~ 443 (463)
+++.+++..+.-.+..|+..=++..--.+.-+ ....-+...+++.+.|-+ -+++++.++.+++++++|-
T Consensus 23 ~~~~~~i~~~ln~~f~P~i~~~~p~lvilV~a----------vi~gl~~~i~~~~liD~ekm~~~qk~m~efq~e~~eA~ 92 (201)
T COG1422 23 SSIRDGIGGALNVVFGPLLSPLPPHLVILVAA----------VITGLYITILQKLLIDQEKMKELQKMMKEFQKEFREAQ 92 (201)
T ss_pred HHHHHHHHHHHHHHHhhhccccccHHHHHHHH----------HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777777777777777665444333222221 233445667778888743 4678888999999998873
Q ss_pred hhCCChHHHHHHHHH
Q 012474 444 LEAGSSYQSLERLVD 458 (463)
Q Consensus 444 ~~~g~~~~~~~~~~~ 458 (463)
+ .+...+++++-+
T Consensus 93 ~--~~d~~~lkkLq~ 105 (201)
T COG1422 93 E--SGDMKKLKKLQE 105 (201)
T ss_pred H--hCCHHHHHHHHH
Confidence 3 335556666544
No 473
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=23.85 E-value=1.4e+02 Score=27.08 Aligned_cols=37 Identities=14% Similarity=0.039 Sum_probs=31.1
Q ss_pred EEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCC
Q 012474 17 VILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFN 53 (463)
Q Consensus 17 il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~ 53 (463)
+++..-|+.|.......+|..++++|++|.++..+..
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~ 39 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA 39 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc
Confidence 3444556779999999999999999999999998754
No 474
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=23.68 E-value=1e+02 Score=26.66 Aligned_cols=33 Identities=21% Similarity=0.226 Sum_probs=24.9
Q ss_pred CceEEE-eCCch-hhHHHHHHHcCCCeEEEeCchh
Q 012474 113 PVTCLI-TDAIW-HFAQTVADTLRLPRIVLRTSSI 145 (463)
Q Consensus 113 ~pD~VI-~D~~~-~~~~~~A~~~giP~v~~~~~~~ 145 (463)
.||+|| .|+.. .-+..=|.++|||+|.++-+.+
T Consensus 108 ~Pdlliv~dp~~~~~Av~EA~~l~IP~Iai~DTn~ 142 (196)
T TIGR01012 108 EPEVVVVTDPRADHQALKEASEVGIPIVALCDTDN 142 (196)
T ss_pred CCCEEEEECCccccHHHHHHHHcCCCEEEEeeCCC
Confidence 377766 56644 6677788999999999887744
No 475
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=23.62 E-value=1.7e+02 Score=26.17 Aligned_cols=33 Identities=15% Similarity=0.147 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012474 14 GRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHT 50 (463)
Q Consensus 14 ~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (463)
.|+|+++...+ .--..|+++|.++||+|+.++-
T Consensus 17 ~~~ilItGasG----~iG~~l~~~L~~~g~~V~~~~R 49 (251)
T PLN00141 17 TKTVFVAGATG----RTGKRIVEQLLAKGFAVKAGVR 49 (251)
T ss_pred CCeEEEECCCc----HHHHHHHHHHHhCCCEEEEEec
Confidence 56666655333 2346788999999999988765
No 476
>PF08452 DNAP_B_exo_N: DNA polymerase family B exonuclease domain, N-terminal; InterPro: IPR013660 This domain is found in viral DNA polymerases to the N terminus of DNA polymerase family B exonuclease domains (IPR006133 from INTERPRO). ; GO: 0003887 DNA-directed DNA polymerase activity
Probab=23.54 E-value=55 Score=16.74 Aligned_cols=16 Identities=25% Similarity=1.059 Sum_probs=12.7
Q ss_pred hccccccCCCCeEEEE
Q 012474 266 CISWLDKQAAKSVMYV 281 (463)
Q Consensus 266 l~~~l~~~~~~~~v~v 281 (463)
+.+|.++.+++..+|+
T Consensus 5 CiNWFE~~ge~r~lyL 20 (22)
T PF08452_consen 5 CINWFESRGEERFLYL 20 (22)
T ss_pred EeehhhhCCceeEEEE
Confidence 6789988777777775
No 477
>PRK06756 flavodoxin; Provisional
Probab=23.46 E-value=1.5e+02 Score=24.07 Aligned_cols=36 Identities=14% Similarity=0.333 Sum_probs=28.2
Q ss_pred cEEEEEcCCCccCHHHH-HHHHHHHHhCCCeEEEEeC
Q 012474 15 RRVILFPLPLQGHINPM-LQLASILYSKGFSITIIHT 50 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p~-l~La~~L~~rGh~Vt~~~~ 50 (463)
|||+++=...+||.--+ ..|++.|.++|++|.+...
T Consensus 2 mkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~ 38 (148)
T PRK06756 2 SKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDI 38 (148)
T ss_pred ceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeeh
Confidence 67888877788998874 5577888888999887654
No 478
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=23.35 E-value=1.9e+02 Score=28.68 Aligned_cols=42 Identities=19% Similarity=0.326 Sum_probs=36.1
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCC
Q 012474 13 KGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNS 54 (463)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~ 54 (463)
++..|+++..++.|-..-...||..|.++|+.|.+++.+...
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R 135 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYR 135 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCC
Confidence 456778888889999999999999999999999999986543
No 479
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=23.32 E-value=2.7e+02 Score=24.36 Aligned_cols=44 Identities=14% Similarity=-0.059 Sum_probs=30.5
Q ss_pred hccccccC--CCCeEEEEecCCcccCCHHHHHHHHHHHhcC-CCceEEE
Q 012474 266 CISWLDKQ--AAKSVMYVSFGSIVVVNVTEFLEIAWGLANS-RVPFLWV 311 (463)
Q Consensus 266 l~~~l~~~--~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~-~~~~v~~ 311 (463)
+.+++... ....++|+...|. ...+......++++.+ +..+...
T Consensus 20 l~~~l~~~~~~~~~i~~IptAs~--~~~~~~~~~~~a~~~l~G~~~~~~ 66 (212)
T cd03146 20 IDDLLLSLTKARPKVLFVPTASG--DRDEYTARFYAAFESLRGVEVSHL 66 (212)
T ss_pred HHHHHHHhccCCCeEEEECCCCC--CHHHHHHHHHHHHhhccCcEEEEE
Confidence 55565553 3556888887776 3567788889999998 7765543
No 480
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.32 E-value=1.3e+02 Score=28.03 Aligned_cols=54 Identities=17% Similarity=0.083 Sum_probs=37.6
Q ss_pred cCCCCcccccccChhhHHHHHh----hCCceeccccccchhhhHHHHHHHhhceeecCCccCHHHHHHHHHHHhcc
Q 012474 351 AHPAVGGFWTHNGWNSTLESIC----EGVPMICQPCFGDQLVNARYVSHVWRVGLHLERKFERREIETAIRRVTVE 422 (463)
Q Consensus 351 ~~~~~~~~I~hgG~~s~~eal~----~GvP~l~~P~~~DQ~~na~rv~~~~G~G~~l~~~~t~~~l~~~i~~~l~~ 422 (463)
..+++ +|+=||-||+.+++. .++|++.+..- + +|. +. ..+.+++.++|.+++++
T Consensus 61 ~~~d~--vi~~GGDGt~l~~~~~~~~~~~Pvlgin~G-----------~-lGF---l~-~~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 61 EVCDL--VIVVGGDGSLLGAARALARHNVPVLGINRG-----------R-LGF---LT-DIRPDELEFKLAEVLDG 118 (295)
T ss_pred cCCCE--EEEEeCcHHHHHHHHHhcCCCCCEEEEeCC-----------c-ccc---cc-cCCHHHHHHHHHHHHcC
Confidence 34667 999999999999975 36788877641 1 221 11 46678888888888765
No 481
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=23.31 E-value=1.7e+02 Score=29.12 Aligned_cols=38 Identities=16% Similarity=0.153 Sum_probs=26.9
Q ss_pred ccCCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012474 9 VQQKKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHT 50 (463)
Q Consensus 9 ~~~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (463)
....+.|||+|.-..+ -+ -..|++.|.++||+|+.+..
T Consensus 115 ~~~~~~mkILVTGatG--FI--Gs~Lv~~Ll~~G~~V~~ldr 152 (436)
T PLN02166 115 GIGRKRLRIVVTGGAG--FV--GSHLVDKLIGRGDEVIVIDN 152 (436)
T ss_pred ccccCCCEEEEECCcc--HH--HHHHHHHHHHCCCEEEEEeC
Confidence 3445679987765444 33 24578999999999998764
No 482
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=23.27 E-value=2.2e+02 Score=22.10 Aligned_cols=45 Identities=22% Similarity=0.299 Sum_probs=31.5
Q ss_pred EcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceE
Q 012474 20 FPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSNYPHFSF 65 (463)
Q Consensus 20 ~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~g~~~ 65 (463)
+.+.-.|...-++..++.++++|..|..+|.....+ ..+...+.+
T Consensus 52 i~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~-la~~ad~~l 96 (128)
T cd05014 52 IAISNSGETDELLNLLPHLKRRGAPIIAITGNPNST-LAKLSDVVL 96 (128)
T ss_pred EEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCc-hhhhCCEEE
Confidence 333445788889999999999999999999854433 333344433
No 483
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=23.24 E-value=54 Score=30.74 Aligned_cols=29 Identities=10% Similarity=0.129 Sum_probs=24.4
Q ss_pred CCCCcccccccChhhHHHHHhh----CCceecccc
Q 012474 352 HPAVGGFWTHNGWNSTLESICE----GVPMICQPC 382 (463)
Q Consensus 352 ~~~~~~~I~hgG~~s~~eal~~----GvP~l~~P~ 382 (463)
.+++ +|+-||-||+.+++.. ++|++++..
T Consensus 57 ~~d~--vi~~GGDGT~l~~~~~~~~~~~pv~gin~ 89 (305)
T PRK02645 57 LIDL--AIVLGGDGTVLAAARHLAPHDIPILSVNV 89 (305)
T ss_pred CcCE--EEEECCcHHHHHHHHHhccCCCCEEEEec
Confidence 4566 9999999999999764 789988875
No 484
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=23.20 E-value=1.5e+02 Score=26.55 Aligned_cols=36 Identities=14% Similarity=0.143 Sum_probs=29.1
Q ss_pred cEEEEEcC-CCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012474 15 RRVILFPL-PLQGHINPMLQLASILYSKGFSITIIHT 50 (463)
Q Consensus 15 ~~il~~~~-~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (463)
|+++.+.. .+.|-..-+..|+++|.++|++|-++-+
T Consensus 1 m~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK~ 37 (229)
T PRK14494 1 MRAIGVIGFKDSGKTTLIEKILKNLKERGYRVATAKH 37 (229)
T ss_pred CeEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEEe
Confidence 45554444 5668999999999999999999999965
No 485
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=23.18 E-value=1.2e+02 Score=25.75 Aligned_cols=35 Identities=14% Similarity=0.235 Sum_probs=27.6
Q ss_pred cEEEEEcCCCccCHHH-HHHHHHHHHhCCCeEEEEeC
Q 012474 15 RRVILFPLPLQGHINP-MLQLASILYSKGFSITIIHT 50 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p-~l~La~~L~~rGh~Vt~~~~ 50 (463)
||++++=...+|+..- ...|++.|.. ||+|.++-.
T Consensus 1 MkilIvY~S~~G~T~~iA~~Ia~~l~~-g~~v~~~~~ 36 (177)
T PRK11104 1 MKTLILYSSRDGQTRKIASYIASELKE-GIQCDVVNL 36 (177)
T ss_pred CcEEEEEECCCChHHHHHHHHHHHhCC-CCeEEEEEh
Confidence 6777777778899988 5567888877 999988765
No 486
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=23.08 E-value=1.1e+02 Score=24.99 Aligned_cols=36 Identities=8% Similarity=0.205 Sum_probs=24.8
Q ss_pred cEEEEEcCCCc--cCHHHHHHHHH-HHHhCCCeEEEEeC
Q 012474 15 RRVILFPLPLQ--GHINPMLQLAS-ILYSKGFSITIIHT 50 (463)
Q Consensus 15 ~~il~~~~~~~--GH~~p~l~La~-~L~~rGh~Vt~~~~ 50 (463)
|||+++..... |+..-+...+. .|.++|++|.++-.
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l 39 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDL 39 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEEC
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 78888877754 77776555444 44556999998865
No 487
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=22.95 E-value=1.4e+02 Score=26.78 Aligned_cols=37 Identities=19% Similarity=0.215 Sum_probs=24.5
Q ss_pred CcEEE-EEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCC
Q 012474 14 GRRVI-LFPLPLQGHINPMLQLASILYSKGFSITIIHTN 51 (463)
Q Consensus 14 ~~~il-~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~ 51 (463)
.++|+ +.|.|- -=..-+-+....|.++||+|++++-.
T Consensus 10 ~~~vL~v~aHPD-De~~g~ggtla~~~~~G~~V~v~~lT 47 (237)
T COG2120 10 PLRVLVVFAHPD-DEEIGCGGTLAKLAARGVEVTVVCLT 47 (237)
T ss_pred CCcEEEEecCCc-chhhccHHHHHHHHHCCCeEEEEEcc
Confidence 44444 445542 23345667778889999999998753
No 488
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=22.76 E-value=1.2e+02 Score=27.64 Aligned_cols=37 Identities=14% Similarity=0.128 Sum_probs=15.3
Q ss_pred eEEEEecCCcccCCHH-HHHHHHHHHhcC--CCceEEEEc
Q 012474 277 SVMYVSFGSIVVVNVT-EFLEIAWGLANS--RVPFLWVVR 313 (463)
Q Consensus 277 ~~v~vs~Gs~~~~~~~-~~~~~~~al~~~--~~~~v~~~~ 313 (463)
.++++||||......+ .+..+.+.+++. +..+.|...
T Consensus 2 AIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfT 41 (262)
T PF06180_consen 2 AILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFT 41 (262)
T ss_dssp EEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEch
Confidence 3566666665543222 444444444432 345555543
No 489
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=22.72 E-value=1.5e+02 Score=28.88 Aligned_cols=41 Identities=15% Similarity=0.062 Sum_probs=31.9
Q ss_pred CCcEEEEEcC--CCccCHHHHHHHHHHHHhCCCeEEEEeC-CCC
Q 012474 13 KGRRVILFPL--PLQGHINPMLQLASILYSKGFSITIIHT-NFN 53 (463)
Q Consensus 13 ~~~~il~~~~--~~~GH~~p~l~La~~L~~rGh~Vt~~~~-~~~ 53 (463)
++++|+.+.. ||.|-..-...||..|+.+|++|.++=- +++
T Consensus 104 ~~~~vIav~n~KGGVGKTTta~nLA~~LA~~G~rVLlIDl~DpQ 147 (387)
T PHA02519 104 KNPVVLAVMSHKGGVYKTSSAVHTAQWLALQGHRVLLIEGNDPQ 147 (387)
T ss_pred CCceEEEEecCCCCCcHHHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 4466655554 4669999999999999999999999863 443
No 490
>PRK06924 short chain dehydrogenase; Provisional
Probab=22.60 E-value=1.5e+02 Score=26.45 Aligned_cols=33 Identities=18% Similarity=0.117 Sum_probs=22.6
Q ss_pred cEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012474 15 RRVILFPLPLQGHINPMLQLASILYSKGFSITIIHT 50 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (463)
||.++++.++ |- =-..++++|+++|++|++++.
T Consensus 1 ~k~vlItGas-gg--iG~~ia~~l~~~g~~V~~~~r 33 (251)
T PRK06924 1 MRYVIITGTS-QG--LGEAIANQLLEKGTHVISISR 33 (251)
T ss_pred CcEEEEecCC-ch--HHHHHHHHHHhcCCEEEEEeC
Confidence 4555555443 42 346789999999999988764
No 491
>PHA02754 hypothetical protein; Provisional
Probab=22.45 E-value=1.6e+02 Score=19.51 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=18.5
Q ss_pred HHHHHHhccchHHHHHHHHHHHHHHHH
Q 012474 414 TAIRRVTVEAEGQEMRERIMHLKEKLE 440 (463)
Q Consensus 414 ~~i~~~l~~~~~~~~~~~a~~~~~~~~ 440 (463)
+.|.+++.+ ++|++..+.+++.+.
T Consensus 5 eEi~k~i~e---K~Fke~MRelkD~LS 28 (67)
T PHA02754 5 EEIPKAIME---KDFKEAMRELKDILS 28 (67)
T ss_pred HHHHHHHHH---hHHHHHHHHHHHHHh
Confidence 345556677 789999999999887
No 492
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=22.39 E-value=1.5e+02 Score=23.56 Aligned_cols=35 Identities=17% Similarity=0.146 Sum_probs=25.1
Q ss_pred CCCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeC
Q 012474 11 QKKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHT 50 (463)
Q Consensus 11 ~~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~ 50 (463)
+..+|||.|+--|--| ..|++.|.++||+|+-+..
T Consensus 7 ~~~~l~I~iIGaGrVG-----~~La~aL~~ag~~v~~v~s 41 (127)
T PF10727_consen 7 QAARLKIGIIGAGRVG-----TALARALARAGHEVVGVYS 41 (127)
T ss_dssp -----EEEEECTSCCC-----CHHHHHHHHTTSEEEEESS
T ss_pred CCCccEEEEECCCHHH-----HHHHHHHHHCCCeEEEEEe
Confidence 4568999999887655 3688999999999988766
No 493
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=22.29 E-value=99 Score=24.60 Aligned_cols=23 Identities=17% Similarity=0.235 Sum_probs=18.3
Q ss_pred HHHHHHHHHHhCCCeEEEEeCCC
Q 012474 30 PMLQLASILYSKGFSITIIHTNF 52 (463)
Q Consensus 30 p~l~La~~L~~rGh~Vt~~~~~~ 52 (463)
..+...++|.++||+|+++|.-.
T Consensus 28 ~~ie~L~~l~~~G~~IiiaTGR~ 50 (126)
T TIGR01689 28 AVIEKLRHYKALGFEIVISSSRN 50 (126)
T ss_pred HHHHHHHHHHHCCCEEEEECCCC
Confidence 45666777789999999999853
No 494
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=22.29 E-value=3.4e+02 Score=25.23 Aligned_cols=109 Identities=14% Similarity=0.023 Sum_probs=56.8
Q ss_pred CccccccccccccccCCCcccccchhccccccCCCCeEEEEecCCcccCCHHHHHHHHHHHhcCCCceEEEEcCCCCCCC
Q 012474 241 PMFPIGPFHKYCLASSSSLLSQDQSCISWLDKQAAKSVMYVSFGSIVVVNVTEFLEIAWGLANSRVPFLWVVRPGLVPGV 320 (463)
Q Consensus 241 ~v~~vGpl~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~v~~~~~~~~~~~ 320 (463)
|-.++|....++.. .-....+++....+.+-+++-+-........+...+..+.+++++++..+++=++......
T Consensus 97 pdrf~~~~~v~p~~----~~~a~~E~er~v~~~gf~g~~l~p~~~~~~~~~~~~~pi~~~a~~~gvpv~ihtG~~~~~~- 171 (293)
T COG2159 97 PDRFVGFARVDPRD----PEAAAEELERRVRELGFVGVKLHPVAQGFYPDDPRLYPIYEAAEELGVPVVIHTGAGPGGA- 171 (293)
T ss_pred CcceeeeeeeCCCc----hHHHHHHHHHHHHhcCceEEEecccccCCCCCChHHHHHHHHHHHcCCCEEEEeCCCCCCc-
Confidence 44566655555442 1112233555555432222222222222234455578899999999999888665432100
Q ss_pred ccCCCCchhHHHHhcCCCceeeccC---hhhhhcCCCCcccccccC--hhhHHHH
Q 012474 321 EWLEPLPKGFLEMLDGRGHIVKWAP---QQEVLAHPAVGGFWTHNG--WNSTLES 370 (463)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~vp---q~~lL~~~~~~~~I~hgG--~~s~~ea 370 (463)
. +.. . ...| ..-....|+++.++.|+| +.=..|+
T Consensus 172 ~----~~~----------~--~~~p~~~~~va~~fP~l~IVl~H~G~~~p~~~~a 210 (293)
T COG2159 172 G----LEK----------G--HSDPLYLDDVARKFPELKIVLGHMGEDYPWELEA 210 (293)
T ss_pred c----ccc----------C--CCCchHHHHHHHHCCCCcEEEEecCCCCchhHHH
Confidence 0 000 0 0112 233455789999999999 5545555
No 495
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=22.29 E-value=1.6e+02 Score=27.24 Aligned_cols=35 Identities=9% Similarity=0.104 Sum_probs=28.2
Q ss_pred cEEEEEcCCCccCHHHHH-HHHHHHHhCCCeEEEEe
Q 012474 15 RRVILFPLPLQGHINPML-QLASILYSKGFSITIIH 49 (463)
Q Consensus 15 ~~il~~~~~~~GH~~p~l-~La~~L~~rGh~Vt~~~ 49 (463)
|||+++......+..... .+++.|.++|++|.+..
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~ 36 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDS 36 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEec
Confidence 899999999886666554 66667999999988864
No 496
>PF09334 tRNA-synt_1g: tRNA synthetases class I (M); InterPro: IPR015413 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain is found in methionyl and leucyl tRNA synthetases. ; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 2D5B_A 1A8H_A 1WOY_A 2D54_A 4DLP_A 2CT8_B 2CSX_A 1MED_A 1PFU_A 1PFW_A ....
Probab=22.27 E-value=69 Score=31.27 Aligned_cols=28 Identities=29% Similarity=0.484 Sum_probs=21.0
Q ss_pred cCHHHHH---HHHHHHHhCCCeEEEEeCCCC
Q 012474 26 GHINPML---QLASILYSKGFSITIIHTNFN 53 (463)
Q Consensus 26 GH~~p~l---~La~~L~~rGh~Vt~~~~~~~ 53 (463)
||+.|++ .+++-++.+||+|.|+|+...
T Consensus 17 GH~~~~l~ADv~aR~~r~~G~~v~~~tGtDe 47 (391)
T PF09334_consen 17 GHLYPYLAADVLARYLRLRGHDVLFVTGTDE 47 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-EEEEEEEEE-
T ss_pred ChhHHHHHHHHHHHHHhhcccceeeEEecch
Confidence 9999765 567777789999999998543
No 497
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=22.27 E-value=5.5e+02 Score=28.50 Aligned_cols=98 Identities=12% Similarity=0.174 Sum_probs=53.1
Q ss_pred CCCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCCCCCCCCCCCceEEeCCCCCCCcccccccHHHHHHHHHH
Q 012474 12 KKGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFNSPNPSNYPHFSFNSISESLWESEVSTENAISLLTVLND 91 (463)
Q Consensus 12 ~~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (463)
-++.|++++..+. -...+++.|.+-|-+|..++...... .....+ ..+ ..+.. .-
T Consensus 318 L~GKrv~i~~g~~-----~~~~la~~l~elGmevv~~g~~~~~~--~d~~~~--~~~---~~~~~-------------~v 372 (917)
T PRK14477 318 LEGKRVVLFTGGV-----KTWSMVNALRELGVEVLAAGTQNSTL--EDFARM--KAL---MHKDA-------------HI 372 (917)
T ss_pred ccCCEEEEECCCc-----hHHHHHHHHHHCCCEEEEEcCCCCCH--HHHHHH--HHh---cCCCC-------------EE
Confidence 3577888886553 35668888888999997755532110 000000 000 00000 00
Q ss_pred hcCchHHHHHHHHHhCCCCCCCceEEEeCCchhhHHHHHHHcCCCeEEEeC
Q 012474 92 KCVVPFQDCLAKLISNGDQEEPVTCLITDAIWHFAQTVADTLRLPRIVLRT 142 (463)
Q Consensus 92 ~~~~~l~~~l~~l~~~~~~~~~pD~VI~D~~~~~~~~~A~~~giP~v~~~~ 142 (463)
.....+.++.+.+.+ .+||++|.... ...+|+++|||++....
T Consensus 373 i~~~d~~el~~~i~~-----~~pDLlig~~~---~~~~a~k~giP~~~~~~ 415 (917)
T PRK14477 373 IEDTSTAGLLRVMRE-----KMPDLIVAGGK---TKFLALKTRTPFLDINH 415 (917)
T ss_pred EECCCHHHHHHHHHh-----cCCCEEEecCc---hhhHHHHcCCCeEEccC
Confidence 011123333333333 57999999764 45689999999996553
No 498
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=22.26 E-value=1.2e+02 Score=26.56 Aligned_cols=33 Identities=18% Similarity=0.116 Sum_probs=24.8
Q ss_pred CceEEE-eCCch-hhHHHHHHHcCCCeEEEeCchh
Q 012474 113 PVTCLI-TDAIW-HFAQTVADTLRLPRIVLRTSSI 145 (463)
Q Consensus 113 ~pD~VI-~D~~~-~~~~~~A~~~giP~v~~~~~~~ 145 (463)
.||+|| .|+.. .-+..=|.++|||+|.++-+.+
T Consensus 114 ~Pdliiv~dp~~~~~AI~EA~kl~IP~IaivDTn~ 148 (204)
T PRK04020 114 EPDVVVVTDPRGDAQAVKEAIEVGIPVVALCDTDN 148 (204)
T ss_pred CCCEEEEECCcccHHHHHHHHHhCCCEEEEEeCCC
Confidence 478776 56644 5667788899999999887744
No 499
>PF09001 DUF1890: Domain of unknown function (DUF1890); InterPro: IPR012033 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. The structure of the Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) protein has been determined but no evidence as to the function is available yet.; PDB: 1KJN_B.
Probab=22.13 E-value=72 Score=25.63 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=21.2
Q ss_pred cCHHHHHHHHHHHHhCCCeEEEEeCCC
Q 012474 26 GHINPMLQLASILYSKGFSITIIHTNF 52 (463)
Q Consensus 26 GH~~p~l~La~~L~~rGh~Vt~~~~~~ 52 (463)
-.+--.+-++..|.++||+|++.+++.
T Consensus 11 vq~p~alYl~~~Lk~~G~~v~Va~npA 37 (139)
T PF09001_consen 11 VQTPSALYLSYKLKKKGFEVVVAGNPA 37 (139)
T ss_dssp THHHHHHHHHHHHHCTTEEEEEEE-HH
T ss_pred chhHHHHHHHHHHHhcCCeEEEecCHH
Confidence 344457889999999999999999864
No 500
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=22.11 E-value=81 Score=26.36 Aligned_cols=53 Identities=23% Similarity=0.243 Sum_probs=32.9
Q ss_pred CCcEEEEEcCCCccCHHHHHHHHHHHHhCCCeEEEEeCCCC-CCCCCCCCCceEEeCCC
Q 012474 13 KGRRVILFPLPLQGHINPMLQLASILYSKGFSITIIHTNFN-SPNPSNYPHFSFNSISE 70 (463)
Q Consensus 13 ~~~~il~~~~~~~GH~~p~l~La~~L~~rGh~Vt~~~~~~~-~~~~~~~~g~~~~~~~~ 70 (463)
+..+|+++-++++||. -|.-|++.|++|++.-.+.. .....+..||+..++.+
T Consensus 3 ~~k~IAViGyGsQG~a-----~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~e 56 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHA-----HALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVAE 56 (165)
T ss_dssp CTSEEEEES-SHHHHH-----HHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHHH
T ss_pred CCCEEEEECCChHHHH-----HHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHHH
Confidence 3568999999999885 47789999999999876432 11112225777665554
Done!