Query 012477
Match_columns 462
No_of_seqs 198 out of 2077
Neff 8.8
Searched_HMMs 29240
Date Mon Mar 25 10:12:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012477.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012477hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2anr_A Neuro-oncological ventr 99.9 4.3E-26 1.5E-30 204.5 11.3 161 40-216 3-177 (178)
2 3krm_A Insulin-like growth fac 99.9 2.1E-25 7.2E-30 197.1 14.7 155 42-215 2-157 (163)
3 2jzx_A Poly(RC)-binding protei 99.9 2.6E-25 8.9E-30 195.8 11.6 155 41-214 3-159 (160)
4 1j4w_A FUSE binding protein; s 99.9 2.1E-24 7.2E-29 192.6 13.0 156 42-212 2-174 (174)
5 2jvz_A KH type-splicing, FAR u 99.9 2E-24 6.9E-29 191.0 11.9 154 43-214 2-160 (164)
6 2anr_A Neuro-oncological ventr 99.9 6.7E-24 2.3E-28 190.1 10.3 159 281-445 3-176 (178)
7 3krm_A Insulin-like growth fac 99.9 2.1E-23 7.2E-28 184.2 13.0 155 284-446 3-158 (163)
8 3n89_A Defective in GERM LINE 99.9 2.2E-23 7.6E-28 202.8 14.2 229 135-442 25-259 (376)
9 1j4w_A FUSE binding protein; s 99.9 5.3E-23 1.8E-27 183.5 11.1 157 284-442 3-174 (174)
10 2jzx_A Poly(RC)-binding protei 99.9 5.9E-23 2E-27 180.7 9.4 153 283-444 4-159 (160)
11 2jvz_A KH type-splicing, FAR u 99.9 5.3E-22 1.8E-26 175.4 14.1 143 140-337 2-144 (164)
12 3n89_A Defective in GERM LINE 99.9 1.1E-20 3.9E-25 183.8 18.0 291 40-439 27-336 (376)
13 2qnd_A FMR1 protein; KH domain 99.8 2.1E-18 7.3E-23 147.9 10.7 137 283-444 3-142 (144)
14 2qnd_A FMR1 protein; KH domain 99.7 4.6E-18 1.6E-22 145.8 10.5 137 42-214 3-142 (144)
15 2e3u_A PH-DIM2P, hypothetical 99.6 1.3E-15 4.3E-20 138.8 8.6 144 43-215 34-192 (219)
16 1dtj_A RNA-binding neurooncolo 99.6 2.9E-15 9.9E-20 114.0 7.0 73 370-444 3-75 (76)
17 2axy_A Poly(RC)-binding protei 99.6 2.5E-15 8.6E-20 113.1 5.8 71 368-445 3-73 (73)
18 1zzk_A Heterogeneous nuclear r 99.6 8.4E-15 2.9E-19 113.0 8.6 73 368-445 5-77 (82)
19 2p2r_A Poly(RC)-binding protei 99.6 3.2E-15 1.1E-19 113.6 5.5 73 368-445 3-75 (76)
20 2e3u_A PH-DIM2P, hypothetical 99.5 8.4E-15 2.9E-19 133.4 9.0 140 285-444 35-191 (219)
21 1wvn_A Poly(RC)-binding protei 99.5 5.7E-15 1.9E-19 114.0 6.3 73 368-445 4-76 (82)
22 1ec6_A RNA-binding protein NOV 99.5 6.6E-15 2.3E-19 115.0 5.3 77 370-448 3-79 (87)
23 2axy_A Poly(RC)-binding protei 99.5 1.9E-14 6.5E-19 108.3 6.2 70 138-214 3-72 (73)
24 1j5k_A Heterogeneous nuclear r 99.5 1.5E-14 5.3E-19 113.3 5.8 75 366-445 10-84 (89)
25 1x4n_A FAR upstream element bi 99.5 3.4E-14 1.2E-18 112.0 7.5 74 368-446 13-86 (92)
26 2dgr_A Ring finger and KH doma 99.5 2E-14 6.8E-19 110.4 5.0 68 368-443 8-75 (83)
27 2opv_A KHSRP protein; KH domai 99.5 9.6E-14 3.3E-18 107.8 8.3 73 368-443 12-84 (85)
28 2hh2_A KH-type splicing regula 99.5 6.7E-14 2.3E-18 113.4 6.9 74 371-446 8-81 (107)
29 1dtj_A RNA-binding neurooncolo 99.5 1.1E-13 3.7E-18 105.3 7.5 73 140-214 3-75 (76)
30 2hh3_A KH-type splicing regula 99.5 1.1E-13 3.7E-18 111.6 7.4 73 370-447 11-83 (106)
31 1wvn_A Poly(RC)-binding protei 99.4 1.2E-13 4.2E-18 106.5 7.1 74 137-215 3-76 (82)
32 1zzk_A Heterogeneous nuclear r 99.4 2.2E-13 7.6E-18 104.9 8.4 73 138-215 5-77 (82)
33 1x4m_A FAR upstream element bi 99.4 7.4E-14 2.5E-18 110.5 5.9 75 368-445 13-87 (94)
34 2p2r_A Poly(RC)-binding protei 99.4 1E-13 3.5E-18 105.3 6.3 73 138-215 3-75 (76)
35 1tua_A Hypothetical protein AP 99.4 4.4E-13 1.5E-17 119.0 10.9 65 141-215 5-74 (191)
36 1we8_A Tudor and KH domain con 99.4 2.2E-13 7.6E-18 109.9 7.7 76 368-446 13-88 (104)
37 1tua_A Hypothetical protein AP 99.4 2E-13 6.9E-18 121.1 6.7 143 45-215 6-161 (191)
38 1vig_A Vigilin; RNA-binding pr 99.4 1.8E-13 6E-18 102.3 5.2 66 369-441 4-69 (71)
39 2ctm_A Vigilin; K homology typ 99.4 6.7E-13 2.3E-17 104.9 8.5 74 368-447 15-88 (95)
40 2opv_A KHSRP protein; KH domai 99.4 7.4E-13 2.5E-17 102.7 8.5 75 137-214 11-85 (85)
41 2cte_A Vigilin; K homology typ 99.4 3.6E-13 1.2E-17 106.5 6.5 72 368-446 15-86 (94)
42 1ec6_A RNA-binding protein NOV 99.4 2.9E-13 1E-17 105.6 5.6 74 140-215 3-76 (87)
43 2ctl_A Vigilin; K homology typ 99.4 8.8E-13 3E-17 104.7 8.2 74 368-445 15-88 (97)
44 1x4n_A FAR upstream element bi 99.4 8.7E-13 3E-17 103.9 7.9 59 40-98 12-70 (92)
45 1j5k_A Heterogeneous nuclear r 99.4 3.9E-13 1.3E-17 105.2 5.8 75 136-215 10-84 (89)
46 2hh2_A KH-type splicing regula 99.4 6.6E-13 2.3E-17 107.5 7.1 73 141-215 8-80 (107)
47 2dgr_A Ring finger and KH doma 99.4 3E-13 1E-17 103.8 4.1 71 136-214 6-76 (83)
48 1x4m_A FAR upstream element bi 99.4 5.7E-13 2E-17 105.4 5.7 77 136-215 11-87 (94)
49 2ctk_A Vigilin; K homology typ 99.3 1.3E-12 4.5E-17 105.0 6.2 71 369-446 16-86 (104)
50 2hh3_A KH-type splicing regula 99.3 1.6E-12 5.5E-17 104.7 6.7 71 140-215 11-81 (106)
51 1we8_A Tudor and KH domain con 99.3 3.1E-12 1.1E-16 103.1 8.3 79 136-217 11-89 (104)
52 1vig_A Vigilin; RNA-binding pr 99.3 1.7E-12 5.9E-17 96.9 5.4 68 138-212 3-70 (71)
53 2ctm_A Vigilin; K homology typ 99.3 5.3E-12 1.8E-16 99.7 6.3 74 135-214 12-85 (95)
54 2ctl_A Vigilin; K homology typ 99.3 7.7E-12 2.6E-16 99.2 6.9 73 138-214 15-87 (97)
55 2cte_A Vigilin; K homology typ 99.3 5.5E-12 1.9E-16 99.6 5.8 73 136-215 13-85 (94)
56 2ctj_A Vigilin; K homology typ 99.2 9.2E-12 3.2E-16 98.1 5.9 72 368-446 15-87 (95)
57 2ctf_A Vigilin; K homology typ 99.2 4.2E-11 1.4E-15 95.7 8.2 70 369-448 26-96 (102)
58 2ctk_A Vigilin; K homology typ 99.1 2.9E-11 1E-15 97.1 5.3 70 138-214 15-84 (104)
59 2ctj_A Vigilin; K homology typ 99.1 7.3E-11 2.5E-15 92.9 5.0 73 135-214 12-85 (95)
60 2ctf_A Vigilin; K homology typ 99.1 1.8E-10 6.3E-15 91.9 6.7 65 140-214 27-92 (102)
61 2cpq_A FragIle X mental retard 99.0 4.4E-10 1.5E-14 86.7 4.5 64 368-441 13-78 (91)
62 2cpq_A FragIle X mental retard 98.7 1.5E-08 5E-13 78.2 5.6 66 136-211 11-78 (91)
63 1k1g_A SF1-BO isoform; splicin 98.6 8.8E-08 3E-12 79.7 7.9 76 369-444 6-99 (131)
64 2yqr_A KIAA0907 protein; struc 98.6 1.9E-07 6.5E-12 76.1 8.6 78 368-445 10-100 (119)
65 1k1g_A SF1-BO isoform; splicin 98.5 4.5E-07 1.5E-11 75.4 8.4 77 138-214 5-99 (131)
66 2yqr_A KIAA0907 protein; struc 98.4 3.4E-07 1.2E-11 74.6 6.8 77 138-214 10-99 (119)
67 2bl5_A MGC83862 protein, quaki 98.1 2.5E-06 8.6E-11 71.3 5.4 76 140-215 2-102 (140)
68 2bl5_A MGC83862 protein, quaki 98.1 2.5E-06 8.6E-11 71.3 5.0 74 370-443 2-100 (140)
69 3u1k_A Polyribonucleotide nucl 98.0 3.3E-06 1.1E-10 88.4 5.3 93 109-212 536-629 (630)
70 3v69_A Protein filia; RNA-bind 97.9 1.9E-05 6.5E-10 64.5 7.1 68 372-445 58-125 (140)
71 3u1k_A Polyribonucleotide nucl 97.7 1.2E-05 4.1E-10 84.1 2.6 63 369-442 566-629 (630)
72 2cxc_A NUSA; transcription ter 97.6 2.5E-05 8.5E-10 65.7 3.3 104 284-406 36-139 (144)
73 4aid_A Polyribonucleotide nucl 97.5 3.8E-05 1.3E-09 81.3 2.5 96 108-214 538-634 (726)
74 2cxc_A NUSA; transcription ter 97.4 5.1E-05 1.8E-09 63.8 2.6 104 43-176 36-139 (144)
75 3v69_A Protein filia; RNA-bind 97.3 0.00038 1.3E-08 56.9 6.6 68 141-214 57-124 (140)
76 4aid_A Polyribonucleotide nucl 96.8 0.00022 7.5E-09 75.5 0.8 65 370-445 570-635 (726)
77 2asb_A Transcription elongatio 96.2 0.004 1.4E-07 56.9 4.5 97 293-410 126-224 (251)
78 2asb_A Transcription elongatio 95.9 0.0062 2.1E-07 55.6 4.3 98 52-180 126-224 (251)
79 1k0r_A NUSA; two component arr 95.8 0.0072 2.5E-07 58.4 4.7 103 285-408 236-345 (366)
80 1k0r_A NUSA; two component arr 95.6 0.016 5.5E-07 56.0 6.2 98 52-180 249-347 (366)
81 3cdi_A Polynucleotide phosphor 95.6 0.0028 9.5E-08 67.4 0.9 95 108-213 528-623 (723)
82 1e3p_A Guanosine pentaphosphat 94.7 0.0027 9.3E-08 67.8 -2.3 93 108-212 567-660 (757)
83 1hh2_P NUSA, N utilization sub 94.7 0.034 1.2E-06 53.5 5.5 93 294-407 246-340 (344)
84 1hh2_P NUSA, N utilization sub 94.2 0.043 1.5E-06 52.8 4.9 96 52-178 245-341 (344)
85 3cdi_A Polynucleotide phosphor 92.8 0.019 6.6E-07 61.0 0.0 62 370-442 560-622 (723)
86 1e3p_A Guanosine pentaphosphat 90.9 0.014 4.6E-07 62.4 -3.9 61 371-442 599-660 (757)
87 3ul0_C Nuclear CAP-binding pro 78.6 2 6.7E-05 23.3 2.6 23 6-30 1-24 (26)
88 2pt7_G HP1451, hypothetical pr 74.2 1.3 4.5E-05 37.2 1.9 30 44-73 34-63 (152)
89 1wh9_A 40S ribosomal protein S 69.2 1.7 5.7E-05 33.2 1.3 28 44-71 36-63 (92)
90 3ukx_C Bimax2 peptide; arm rep 66.2 5 0.00017 22.0 2.4 23 5-28 4-26 (28)
91 2pt7_G HP1451, hypothetical pr 62.4 2.9 9.9E-05 35.1 1.6 65 141-214 34-98 (152)
92 1wh9_A 40S ribosomal protein S 60.3 2.5 8.5E-05 32.2 0.8 28 371-398 36-63 (92)
93 2kl8_A OR15; structural genomi 56.4 28 0.00094 24.1 5.4 46 391-445 22-67 (85)
94 2ba0_A Archeal exosome RNA bin 50.4 19 0.00066 32.2 5.1 55 373-438 139-193 (229)
95 2z0s_A Probable exosome comple 46.5 28 0.00096 31.3 5.6 62 372-445 150-212 (235)
96 4hhu_A OR280; engineered prote 43.4 51 0.0017 25.8 5.7 47 391-446 104-150 (170)
97 3gku_A Probable RNA-binding pr 41.2 7.9 0.00027 34.6 1.0 32 45-76 94-125 (225)
98 4hhu_A OR280; engineered prote 40.1 51 0.0017 25.8 5.3 47 391-446 23-69 (170)
99 3u5c_D RP13, YS3, 40S ribosoma 35.3 11 0.00039 33.8 1.0 28 45-72 46-73 (240)
100 2xzm_C KH domain containing pr 35.3 15 0.0005 33.3 1.7 30 43-72 47-76 (243)
101 3j20_C 30S ribosomal protein S 35.2 14 0.00047 32.7 1.5 27 45-71 42-68 (210)
102 3iev_A GTP-binding protein ERA 34.0 14 0.00047 34.6 1.5 39 367-405 237-284 (308)
103 3u5c_D RP13, YS3, 40S ribosoma 33.1 15 0.00052 33.0 1.5 28 371-398 45-72 (240)
104 3iz6_B 40S ribosomal protein S 31.6 12 0.00041 33.5 0.5 29 44-72 45-73 (227)
105 2ba0_A Archeal exosome RNA bin 31.4 73 0.0025 28.3 5.8 59 142-211 138-196 (229)
106 3j20_C 30S ribosomal protein S 30.7 14 0.00049 32.5 0.9 36 371-406 41-83 (210)
107 2xzm_C KH domain containing pr 29.7 19 0.00064 32.5 1.5 29 370-398 47-75 (243)
108 3r8n_C 30S ribosomal protein S 28.5 12 0.00043 32.9 0.1 27 45-71 63-89 (206)
109 3gku_A Probable RNA-binding pr 28.0 15 0.00053 32.8 0.6 66 141-214 93-159 (225)
110 3iz6_B 40S ribosomal protein S 28.0 16 0.00054 32.7 0.6 29 370-398 44-72 (227)
111 2zkq_c 40S ribosomal protein S 27.6 14 0.00047 33.4 0.2 29 44-72 45-73 (243)
112 3i1m_C 30S ribosomal protein S 26.2 14 0.00049 33.1 0.1 27 45-71 64-90 (233)
113 3iev_A GTP-binding protein ERA 26.0 26 0.00089 32.7 1.8 37 42-78 239-284 (308)
114 2vqe_C 30S ribosomal protein S 24.4 21 0.00071 32.2 0.8 27 45-71 64-90 (239)
115 3r8n_C 30S ribosomal protein S 23.1 16 0.00056 32.1 -0.2 34 372-405 63-100 (206)
116 2ja9_A Exosome complex exonucl 22.4 52 0.0018 28.0 2.9 47 372-429 93-140 (175)
117 1wf3_A GTP-binding protein; GT 22.3 22 0.00076 33.1 0.6 37 369-405 229-274 (301)
118 2zkq_c 40S ribosomal protein S 21.9 18 0.00061 32.6 -0.2 29 370-398 44-72 (243)
119 2vqe_C 30S ribosomal protein S 21.7 26 0.0009 31.5 0.9 27 372-398 64-90 (239)
120 3i1m_C 30S ribosomal protein S 21.4 19 0.00064 32.3 -0.2 27 372-398 64-90 (233)
121 3bbn_C Ribosomal protein S3; s 20.8 19 0.00065 32.0 -0.3 28 45-72 72-99 (218)
122 3bbn_C Ribosomal protein S3; s 20.0 25 0.00086 31.2 0.4 26 373-398 73-98 (218)
No 1
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.93 E-value=4.3e-26 Score=204.45 Aligned_cols=161 Identities=24% Similarity=0.421 Sum_probs=129.6
Q ss_pred CCceEEEEEeeCCccceeecCCchHHHHHHHHhCCeEEEcCC---CCCCCceEEEEEcCCcccccccCCCCcCCHHHHHH
Q 012477 40 PEDTVYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGET---VPGSEERVVTVYSASDETNAFEDGDKFVSPAQDAL 116 (462)
Q Consensus 40 ~~~~~~~ilvp~~~~g~IIGk~G~~Ik~i~~~tg~~I~v~~~---~~~~~ervi~I~G~~e~~~~~~~~~~~v~~a~~a~ 116 (462)
++.++++|+||.+++|.||||+|++|++|+++|||+|+|++. .+++++|+|+|+|++++ +.+|.
T Consensus 3 ~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~~-------------v~~A~ 69 (178)
T 2anr_A 3 GSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEA-------------LNAVH 69 (178)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHHH-------------HHHHH
T ss_pred CCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHHH-------------HHHHH
Confidence 468999999999999999999999999999999999999853 46788999999999777 34555
Q ss_pred HHHHHHHHHhhccC-----------CCCCCCCCceEEEEEEeCCceeeeecCCchHHHHHHhhcCceEEEecCCCCCCcC
Q 012477 117 FKVHDRVIAEELRG-----------DEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCA 185 (462)
Q Consensus 117 ~~i~~~i~~~~~~~-----------~~~~~~~~~~~~~l~ip~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~ 185 (462)
..+.+.+.+..... ..........+++|+||.+++|.|||++|++|++|+++|||+|+|.+....+
T Consensus 70 ~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~--- 146 (178)
T 2anr_A 70 GFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGI--- 146 (178)
T ss_dssp HHHHHHHTCCCCC-----------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC------
T ss_pred HHHHHHHhccCCccccCCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCCC---
Confidence 55555443221000 0000122357899999999999999999999999999999999998764333
Q ss_pred CCCCceEEEEcCHHHHHHHHHHHHHHHhcCC
Q 012477 186 LRSDELVQISGEASVVKKALCQIASRLHDNP 216 (462)
Q Consensus 186 ~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~~ 216 (462)
.+.++.|+|+|++++|.+|+.+|.++++++|
T Consensus 147 ~~~~~~v~I~G~~~~v~~A~~~I~~~i~e~p 177 (178)
T 2anr_A 147 NLQNRVVTVSGEPEQNRKAVELIIQKIQEDP 177 (178)
T ss_dssp -CCEEEEEEESSHHHHHHHHHHHHHHHHSCC
T ss_pred CCCceEEEEEcCHHHHHHHHHHHHHHHHhCC
Confidence 3688999999999999999999999999875
No 2
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.93 E-value=2.1e-25 Score=197.05 Aligned_cols=155 Identities=24% Similarity=0.393 Sum_probs=130.6
Q ss_pred ceEEEEEeeCCccceeecCCchHHHHHHHHhCCeEEEcCC-CCCCCceEEEEEcCCcccccccCCCCcCCHHHHHHHHHH
Q 012477 42 DTVYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGET-VPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVH 120 (462)
Q Consensus 42 ~~~~~ilvp~~~~g~IIGk~G~~Ik~i~~~tg~~I~v~~~-~~~~~ervi~I~G~~e~~~~~~~~~~~v~~a~~a~~~i~ 120 (462)
+-+++|+||.+++|.|||++|++|++|+++|||+|+|++. .+++.+|+|+|+|++++ +..|...++
T Consensus 2 ~~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~e~-------------v~~A~~~I~ 68 (163)
T 3krm_A 2 QEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEA-------------QFKAQGRIY 68 (163)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECHHH-------------HHHHHHHHH
T ss_pred ceEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCHHH-------------HHHHHHHHH
Confidence 4578999999999999999999999999999999999874 67889999999999877 567777787
Q ss_pred HHHHHhhccCCCCCCCCCceEEEEEEeCCceeeeecCCchHHHHHHhhcCceEEEecCCCCCCcCCCCCceEEEEcCHHH
Q 012477 121 DRVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASV 200 (462)
Q Consensus 121 ~~i~~~~~~~~~~~~~~~~~~~~l~ip~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~ 200 (462)
+.+.+.... ........+.+|+||..++|+|||++|++|++|+++|||+|.|.++ ..|. ...++.|+|+|++++
T Consensus 69 ~~~~e~~~~---~~~~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~-~~~~--~~~~~~v~I~G~~~~ 142 (163)
T 3krm_A 69 GKLKEENFF---GPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRD-QTPD--ENDQVIVKIIGHFYA 142 (163)
T ss_dssp HHHHHTTSS---CSSCCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTT-CCCC--TTSEEEEEEEECHHH
T ss_pred HHHhccccc---ccccCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCC-CCCC--CCCceEEEEEeCHHH
Confidence 776654321 1123456788999999999999999999999999999999999764 3443 233458999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 012477 201 VKKALCQIASRLHDN 215 (462)
Q Consensus 201 v~~A~~~I~~~l~~~ 215 (462)
|.+|..+|.+++++.
T Consensus 143 v~~A~~~I~~~i~~~ 157 (163)
T 3krm_A 143 SQMAQRKIRDILAQV 157 (163)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999874
No 3
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.92 E-value=2.6e-25 Score=195.83 Aligned_cols=155 Identities=29% Similarity=0.471 Sum_probs=130.3
Q ss_pred CceEEEEEeeCCccceeecCCchHHHHHHHHhCCeEEEcCCCCCCCceEEEEEcCCcccccccCCCCcCCHHHHHHHHHH
Q 012477 41 EDTVYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVH 120 (462)
Q Consensus 41 ~~~~~~ilvp~~~~g~IIGk~G~~Ik~i~~~tg~~I~v~~~~~~~~ervi~I~G~~e~~~~~~~~~~~v~~a~~a~~~i~ 120 (462)
..++++|+||.+++|.|||++|++|++|+++|||+|+|++. ++++|.|+|+|++++ +.+|...++
T Consensus 3 ~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~--~~~~r~v~I~G~~~~-------------v~~A~~~I~ 67 (160)
T 2jzx_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNA-------------IFKAFAMII 67 (160)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC--TTTEEEEEEEEEHHH-------------HHHHHHHHH
T ss_pred ccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC--CCCceEEEEEeCHHH-------------HHHHHHHHH
Confidence 46899999999999999999999999999999999999875 677999999999776 466777777
Q ss_pred HHHHHhhccCCC--CCCCCCceEEEEEEeCCceeeeecCCchHHHHHHhhcCceEEEecCCCCCCcCCCCCceEEEEcCH
Q 012477 121 DRVIAEELRGDE--DSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEA 198 (462)
Q Consensus 121 ~~i~~~~~~~~~--~~~~~~~~~~~l~ip~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~r~v~I~G~~ 198 (462)
+.+.+......+ ........+++|+||.+++|+|||++|.+|++|+++|||+|+|.++ ..| .+.++.|+|+|++
T Consensus 68 ~~i~e~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~-~~~---~~~~~~v~I~G~~ 143 (160)
T 2jzx_A 68 DKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGD-MLP---NSTERAITIAGIP 143 (160)
T ss_dssp HHHHHHHTSCCCSSSCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCC-CST---TCCEEEEEEEECH
T ss_pred HHHHhhccccCCCCccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCC-CCC---CCCceEEEEEcCH
Confidence 666554321111 1123346899999999999999999999999999999999999764 344 3789999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 012477 199 SVVKKALCQIASRLHD 214 (462)
Q Consensus 199 ~~v~~A~~~I~~~l~~ 214 (462)
++|.+|+.+|.+++.+
T Consensus 144 ~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 144 QSIIECVKQICVVMLE 159 (160)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999876
No 4
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.91 E-value=2.1e-24 Score=192.62 Aligned_cols=156 Identities=24% Similarity=0.401 Sum_probs=123.3
Q ss_pred ceEEEEEeeCCccceeecCCchHHHHHHHHhCCeEEEcCCCCCCCceEEEEEcCCcccccccCCCCcCCHHHHHHHHHHH
Q 012477 42 DTVYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHD 121 (462)
Q Consensus 42 ~~~~~ilvp~~~~g~IIGk~G~~Ik~i~~~tg~~I~v~~~~~~~~ervi~I~G~~e~~~~~~~~~~~v~~a~~a~~~i~~ 121 (462)
..+++|+||.+++|.||||+|++|++|+++|||+|+|++..++.++|+|+|+|++++ +..|+..+.+
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~~~~-------------v~~A~~~I~~ 68 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDR-------------AQHAAEIITD 68 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEECHHH-------------HHHHHHHHHH
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeCHHH-------------HHHHHHHHHH
Confidence 468899999999999999999999999999999999987666788999999999877 3455555544
Q ss_pred HHHHhhccCC--C------------C---CCCCCceEEEEEEeCCceeeeecCCchHHHHHHhhcCceEEEecCCCCCCc
Q 012477 122 RVIAEELRGD--E------------D---SDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSC 184 (462)
Q Consensus 122 ~i~~~~~~~~--~------------~---~~~~~~~~~~l~ip~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~ 184 (462)
.+.+...... + . .......+++|+||.+++|.||||+|++|++|+++|||+|+|.++. +.+
T Consensus 69 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~--~~~ 146 (174)
T 1j4w_A 69 LLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNP--PPN 146 (174)
T ss_dssp HHHHHC-----------------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCC--TTT
T ss_pred HHHhcccCCCCCCCCCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCC--CCC
Confidence 4433210000 0 0 0012346899999999999999999999999999999999998652 233
Q ss_pred CCCCCceEEEEcCHHHHHHHHHHHHHHH
Q 012477 185 ALRSDELVQISGEASVVKKALCQIASRL 212 (462)
Q Consensus 185 ~~~~~r~v~I~G~~~~v~~A~~~I~~~l 212 (462)
..+.++.|+|+|++++|.+|..+|.++|
T Consensus 147 ~~~~~~~v~I~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 147 ADPNMKLFTIRGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp SCTTEEEEEEECCHHHHHHHHHHHHHHC
T ss_pred CCCCceEEEEECCHHHHHHHHHHHHHhC
Confidence 4577899999999999999999998864
No 5
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.91 E-value=2e-24 Score=191.02 Aligned_cols=154 Identities=23% Similarity=0.376 Sum_probs=124.3
Q ss_pred eEEEEEeeCCccceeecCCchHHHHHHHHhCCeEEEcCC--CCCCCceEEEEEcCCcccccccCCCCcCCHHHHHHHHHH
Q 012477 43 TVYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGET--VPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVH 120 (462)
Q Consensus 43 ~~~~ilvp~~~~g~IIGk~G~~Ik~i~~~tg~~I~v~~~--~~~~~ervi~I~G~~e~~~~~~~~~~~v~~a~~a~~~i~ 120 (462)
++++|+||.+++|+|||++|++|++|+++|||+|+|++. .++..+|+|+|+|++++ +..|+..+.
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~~~-------------v~~A~~~I~ 68 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYK-------------VQQACEMVM 68 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECHHH-------------HHHHHHHHH
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCHHH-------------HHHHHHHHH
Confidence 688999999999999999999999999999999999753 35677899999998777 456666666
Q ss_pred HHHHHhhccC---CCCCCCCCceEEEEEEeCCceeeeecCCchHHHHHHhhcCceEEEecCCCCCCcCCCCCceEEEEcC
Q 012477 121 DRVIAEELRG---DEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGE 197 (462)
Q Consensus 121 ~~i~~~~~~~---~~~~~~~~~~~~~l~ip~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~r~v~I~G~ 197 (462)
+.+.+....+ ..+.......+++|.||..++|+|||++|.+|++|+++|||+|.|.+... .+.++.|+|+|+
T Consensus 69 ~ii~e~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~-----~~~~~~v~I~G~ 143 (164)
T 2jvz_A 69 DILRERDQGGFGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDG-----TGPEKIAHIMGP 143 (164)
T ss_dssp HHTTCSSSCCCSSCSSCTTSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCCT-----TSSEEEEEEESC
T ss_pred HHHHhccCCCCCCccccCCCCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCCC-----CCCcEEEEEEcC
Confidence 6554322111 00111111346889999999999999999999999999999999986532 356899999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 012477 198 ASVVKKALCQIASRLHD 214 (462)
Q Consensus 198 ~~~v~~A~~~I~~~l~~ 214 (462)
+++|..|..+|.+++++
T Consensus 144 ~~~v~~A~~~I~~~i~~ 160 (164)
T 2jvz_A 144 PDRCEHAARIINDLLQS 160 (164)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999999875
No 6
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.90 E-value=6.7e-24 Score=190.13 Aligned_cols=159 Identities=21% Similarity=0.380 Sum_probs=120.0
Q ss_pred CcceEEEEeeeCCccccccccCChhHHhHHhhhCCeEEecCCC---CCCCceEEEEecCCcccccccHHHHHHHhhcCcc
Q 012477 281 SKEFSLRLVCPVANIGGVIGKGGAIINQIRQESGAAIKVDSSS---TEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRC 357 (462)
Q Consensus 281 ~~~~~~~v~ip~~~~g~IIGk~G~~Ik~I~~~sga~I~i~~~~---~~~~~~~i~i~G~~~~~~~~~~~~~a~~~~~~~~ 357 (462)
..+++++|.||.+++|.|||++|++|++|+++|||+|+|++.. +.+.+|+++|+|... .+..+...+.......
T Consensus 3 ~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~---~v~~A~~~I~~~~~~~ 79 (178)
T 2anr_A 3 GSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIE---ALNAVHGFIAEKIREM 79 (178)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHH---HHHHHHHHHHHHHTCC
T ss_pred CCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHH---HHHHHHHHHHHHHhcc
Confidence 3568999999999999999999999999999999999998753 346789999999732 1222222222221111
Q ss_pred cccc------------cccCCCcceEEEEEecCCccceeecCCCchHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEE
Q 012477 358 SEKI------------ERDSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQIS 425 (462)
Q Consensus 358 ~~~~------------~~~~~~~~~t~~i~Vp~~~~g~IIGk~G~~I~~I~~~sga~I~i~~~~~~P~~~~~~~~~v~I~ 425 (462)
.... .........+.+|.||.+++|+|||++|++|++|++.|||+|+|.+... ....+++.|+|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~---~~~~~~~~v~I~ 156 (178)
T 2anr_A 80 PQNVAKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPD---GINLQNRVVTVS 156 (178)
T ss_dssp CCC-----------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC-------CCEEEEEEE
T ss_pred CCccccCCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCC---CCCCCceEEEEE
Confidence 0000 0001123478899999999999999999999999999999999976532 224567999999
Q ss_pred cCHHHHHHHHHHHHHHHHhh
Q 012477 426 GDLDLAKDALIQVMTRLRAN 445 (462)
Q Consensus 426 G~~~~v~~A~~~I~~~l~~~ 445 (462)
|++++|+.|+.+|.++|+++
T Consensus 157 G~~~~v~~A~~~I~~~i~e~ 176 (178)
T 2anr_A 157 GEPEQNRKAVELIIQKIQED 176 (178)
T ss_dssp SSHHHHHHHHHHHHHHHHSC
T ss_pred cCHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999875
No 7
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.90 E-value=2.1e-23 Score=184.20 Aligned_cols=155 Identities=21% Similarity=0.311 Sum_probs=118.4
Q ss_pred eEEEEeeeCCccccccccCChhHHhHHhhhCCeEEecCC-CCCCCceEEEEecCCcccccccHHHHHHHhhcCccccccc
Q 012477 284 FSLRLVCPVANIGGVIGKGGAIINQIRQESGAAIKVDSS-STEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEKIE 362 (462)
Q Consensus 284 ~~~~v~ip~~~~g~IIGk~G~~Ik~I~~~sga~I~i~~~-~~~~~~~~i~i~G~~~~~~~~~~~~~a~~~~~~~~~~~~~ 362 (462)
.+++|.||.+++|.|||++|++|++|+++|||+|+|++. .+++.+++|+|+|+... +..+...++...... ...
T Consensus 3 ~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~e~---v~~A~~~I~~~~~e~--~~~ 77 (163)
T 3krm_A 3 EMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEA---QFKAQGRIYGKLKEE--NFF 77 (163)
T ss_dssp EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECHHH---HHHHHHHHHHHHHHT--TSS
T ss_pred eEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCHHH---HHHHHHHHHHHHhcc--ccc
Confidence 378999999999999999999999999999999999986 35678999999996421 111222222211000 011
Q ss_pred ccCCCcceEEEEEecCCccceeecCCCchHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHH
Q 012477 363 RDSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRL 442 (462)
Q Consensus 363 ~~~~~~~~t~~i~Vp~~~~g~IIGk~G~~I~~I~~~sga~I~i~~~~~~P~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l 442 (462)
.+......+.+|.||.+++|+|||++|++|++|++.|||+|.|.+.. .|. ..+++.|+|+|++++|+.|+.+|.+.|
T Consensus 78 ~~~~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~-~~~--~~~~~~v~I~G~~~~v~~A~~~I~~~i 154 (163)
T 3krm_A 78 GPKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQ-TPD--ENDQVIVKIIGHFYASQMAQRKIRDIL 154 (163)
T ss_dssp CSSCCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTTC-CCC--TTSEEEEEEEECHHHHHHHHHHHHHHH
T ss_pred ccccCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCCC-CCC--CCCceEEEEEeCHHHHHHHHHHHHHHH
Confidence 11223457889999999999999999999999999999999997542 232 233458999999999999999999998
Q ss_pred Hhhh
Q 012477 443 RANL 446 (462)
Q Consensus 443 ~~~~ 446 (462)
++..
T Consensus 155 ~~~~ 158 (163)
T 3krm_A 155 AQVK 158 (163)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 8753
No 8
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.90 E-value=2.2e-23 Score=202.78 Aligned_cols=229 Identities=16% Similarity=0.136 Sum_probs=156.0
Q ss_pred CCCCceEEEEEEeCCceeeeecCCc--hHHHHHHhhcCceEEEecCCCCCCcCCCCCceEEEEcCHHHHHHHHHHHHHHH
Q 012477 135 DGGHQVTAKLLVPSDQIGCVIGKGG--QIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRL 212 (462)
Q Consensus 135 ~~~~~~~~~l~ip~~~~g~IIGk~G--~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l 212 (462)
...+.+++.+.||..+|++||||+| ++|++|+++|||+|+|+..+.-..........|+|+|.+++|++|+..|.+++
T Consensus 25 ~~~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enVE~AR~~I~~l~ 104 (376)
T 3n89_A 25 INPTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDVDRARMLMRRNC 104 (376)
T ss_dssp CCTTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHHHHHHHHHHHSC
T ss_pred ecCCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHHHHHHHHHHhcC
Confidence 3467899999999999999999999 99999999999999997653000001245678999999999999999987643
Q ss_pred hcCCCCcccccccccCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEEeeeC
Q 012477 213 HDNPSRSQHLLASAISNSHSSSGSLVGPTAATPIVGIAPLMGPYGGYKGDTAGDWSRSLYSAPRDDLSSKEFSLRLVCPV 292 (462)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~ip~ 292 (462)
- +++.+.+|.
T Consensus 105 P----------------------------------------------------------------------l~i~~elp~ 114 (376)
T 3n89_A 105 H----------------------------------------------------------------------FTVFMALSK 114 (376)
T ss_dssp E----------------------------------------------------------------------EEEEEECTT
T ss_pred C----------------------------------------------------------------------ceEEEEccc
Confidence 1 234444544
Q ss_pred CccccccccCChhHHhHHhhhCCeEEecCCCCC--CCceEEEEecCCcccccccHHHHHHHhhcCcccccccccCCCcce
Q 012477 293 ANIGGVIGKGGAIINQIRQESGAAIKVDSSSTE--GDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEKIERDSGLISF 370 (462)
Q Consensus 293 ~~~g~IIGk~G~~Ik~I~~~sga~I~i~~~~~~--~~~~~i~i~G~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 370 (462)
..++. ...+..|.+ ++.++++|.|+..... .....|+|+|.+...+ .+.+|+..+...+.+. .......+
T Consensus 115 ~~i~~--~~l~~~I~q-q~~y~V~I~Fp~~~~~~~~~sd~V~IrG~~~nv~---~akeA~~~Ll~~l~~~--e~~~~~~~ 186 (376)
T 3n89_A 115 MKMPL--HELQAHVRQ-NPIQNVEMSFVDAPEKNGIVTTYLRITAREKNQH---ELIEAAKRLNEILFRE--SPAPENNF 186 (376)
T ss_dssp CSSCH--HHHHHHHHH-CCCTTCEEEEEEEC-----CEEEEEEEEEGGGHH---HHHHHHHHHHHHHCC----CCCSSCE
T ss_pred cccCc--chhhhhhcc-ceeCceEEEeCCcccccCCCCCEEEEEcChhhHH---HHHHHHHHHHHHHHhh--hcccccce
Confidence 32221 111234444 5678999999664321 1256899999764332 2334433332222111 11123468
Q ss_pred EEEEEecCCccceeecCCC--chHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHH
Q 012477 371 TTRLLVPTSRIGCLIGKGG--SIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRL 442 (462)
Q Consensus 371 t~~i~Vp~~~~g~IIGk~G--~~I~~I~~~sga~I~i~~~~~~P~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l 442 (462)
+.+|.|+..+|..|||++| ..|++|+++|||+|.+++..+ +.....+...|+|+|+.++|+.|+.+|++.|
T Consensus 187 s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d-~~d~~~~~~~ItItGs~e~V~~Ark~I~~lL 259 (376)
T 3n89_A 187 TLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNN-RNETRGNIYEIKVVGNIDNVLKARRYIMDLL 259 (376)
T ss_dssp EEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC----------CCEEEEEEESCHHHHHHHHHHHHHTS
T ss_pred EEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCC-cccccCCceEEEEEeCHHHHHHHHHHHHhhC
Confidence 9999999999999999999 566999999999999864322 1100123468999999999999999998764
No 9
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.88 E-value=5.3e-23 Score=183.53 Aligned_cols=157 Identities=18% Similarity=0.280 Sum_probs=115.8
Q ss_pred eEEEEeeeCCccccccccCChhHHhHHhhhCCeEEecCCCCCCCceEEEEecCCcccccccHHHHHHHhhcCc-ccccc-
Q 012477 284 FSLRLVCPVANIGGVIGKGGAIINQIRQESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPR-CSEKI- 361 (462)
Q Consensus 284 ~~~~v~ip~~~~g~IIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~~~i~i~G~~~~~~~~~~~~~a~~~~~~~-~~~~~- 361 (462)
.+++|.||.+++|.|||++|++|++|+++|||+|+|.+..+.+.+++|+|.|+..........+...+..... .....
T Consensus 3 ~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~~~~v~~A~~~I~~~~~~~~~~~~~~~~ 82 (174)
T 1j4w_A 3 HMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRAQHAAEIITDLLRSVQAGNPGGPG 82 (174)
T ss_dssp EEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEECHHHHHHHHHHHHHHHHHHC--------
T ss_pred eEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeCHHHHHHHHHHHHHHHHhcccCCCCCCC
Confidence 5789999999999999999999999999999999998766567789999999742111111112222221110 00000
Q ss_pred -------------cccCCCcceEEEEEecCCccceeecCCCchHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCH
Q 012477 362 -------------ERDSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDL 428 (462)
Q Consensus 362 -------------~~~~~~~~~t~~i~Vp~~~~g~IIGk~G~~I~~I~~~sga~I~i~~~~~~P~~~~~~~~~v~I~G~~ 428 (462)
.........+.+|.||.+++|+||||+|++|++|++.|||+|+|.+.. |+..+.+++.|+|+|++
T Consensus 83 p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~--~~~~~~~~~~v~I~G~~ 160 (174)
T 1j4w_A 83 PGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNP--PPNADPNMKLFTIRGTP 160 (174)
T ss_dssp ---------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCC--TTTSCTTEEEEEEECCH
T ss_pred CCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCC--CCCCCCCceEEEEECCH
Confidence 000001246889999999999999999999999999999999997642 33345678999999999
Q ss_pred HHHHHHHHHHHHHH
Q 012477 429 DLAKDALIQVMTRL 442 (462)
Q Consensus 429 ~~v~~A~~~I~~~l 442 (462)
++|+.|+.+|.++|
T Consensus 161 ~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 161 QQIDYARQLIEEKI 174 (174)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999998864
No 10
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.88 E-value=5.9e-23 Score=180.72 Aligned_cols=153 Identities=25% Similarity=0.438 Sum_probs=117.3
Q ss_pred ceEEEEeeeCCccccccccCChhHHhHHhhhCCeEEecCCCCCCCceEEEEecCCcccccccHHHHHHHhhcCc-ccccc
Q 012477 283 EFSLRLVCPVANIGGVIGKGGAIINQIRQESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPR-CSEKI 361 (462)
Q Consensus 283 ~~~~~v~ip~~~~g~IIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~~~i~i~G~~~~~~~~~~~~~a~~~~~~~-~~~~~ 361 (462)
+++++|.||..++|.|||++|++|++|+++|||+|+|++. ++.+++|+|.|+.. .+..+...+...... .....
T Consensus 4 ~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~--~~~~r~v~I~G~~~---~v~~A~~~I~~~i~e~~~~~~ 78 (160)
T 2jzx_A 4 TLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTN---AIFKAFAMIIDKLEEDISSSM 78 (160)
T ss_dssp EEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC--TTTEEEEEEEEEHH---HHHHHHHHHHHHHHHHHTSCC
T ss_pred cEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC--CCCceEEEEEeCHH---HHHHHHHHHHHHHHhhccccC
Confidence 4789999999999999999999999999999999999985 34689999999731 112222222111100 00000
Q ss_pred cc--cCCCcceEEEEEecCCccceeecCCCchHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHH
Q 012477 362 ER--DSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVM 439 (462)
Q Consensus 362 ~~--~~~~~~~t~~i~Vp~~~~g~IIGk~G~~I~~I~~~sga~I~i~~~~~~P~~~~~~~~~v~I~G~~~~v~~A~~~I~ 439 (462)
.. .......+.++.||.+++|+|||++|++|++|++.|||+|+|.+. ..| +.+++.|+|+|++++|+.|+.+|.
T Consensus 79 ~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~-~~~---~~~~~~v~I~G~~~~v~~A~~~I~ 154 (160)
T 2jzx_A 79 TNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGD-MLP---NSTERAITIAGIPQSIIECVKQIC 154 (160)
T ss_dssp CSSSCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCC-CST---TCCEEEEEEEECHHHHHHHHHHHH
T ss_pred CCCccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCC-CCC---CCCceEEEEEcCHHHHHHHHHHHH
Confidence 00 012235889999999999999999999999999999999999653 223 467899999999999999999999
Q ss_pred HHHHh
Q 012477 440 TRLRA 444 (462)
Q Consensus 440 ~~l~~ 444 (462)
+.|.+
T Consensus 155 ~~i~e 159 (160)
T 2jzx_A 155 VVMLE 159 (160)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 98876
No 11
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.87 E-value=5.3e-22 Score=175.40 Aligned_cols=143 Identities=20% Similarity=0.437 Sum_probs=116.0
Q ss_pred eEEEEEEeCCceeeeecCCchHHHHHHhhcCceEEEecCCCCCCcCCCCCceEEEEcCHHHHHHHHHHHHHHHhcCCCCc
Q 012477 140 VTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHDNPSRS 219 (462)
Q Consensus 140 ~~~~l~ip~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~~~~~ 219 (462)
++.+|+||.+++|.|||++|++|++|+++|||+|++.++...+ ...+|.|+|+|++++|.+|+.+|.+++.+.....
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~---~~~~r~v~I~G~~~~v~~A~~~I~~ii~e~~~~~ 78 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQN---TNVDKPLRIIGDPYKVQQACEMVMDILRERDQGG 78 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSS---SSSCEEEEEEECHHHHHHHHHHHHHHTTCSSSCC
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCC---CCCceEEEEEcCHHHHHHHHHHHHHHHHhccCCC
Confidence 5789999999999999999999999999999999997653322 4678999999999999999999999998742100
Q ss_pred ccccccccCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEEeeeCCcccccc
Q 012477 220 QHLLASAISNSHSSSGSLVGPTAATPIVGIAPLMGPYGGYKGDTAGDWSRSLYSAPRDDLSSKEFSLRLVCPVANIGGVI 299 (462)
Q Consensus 220 ~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~v~ip~~~~g~II 299 (462)
|.. . .. |. + ...+++++.||..++|+||
T Consensus 79 -----------~~~------------------~------------~~-----~~-~-----~~~~~~~i~vp~~~~g~iI 106 (164)
T 2jvz_A 79 -----------FGD------------------R------------NE-----YG-S-----RIGGGIDVPVPRHSVGVVI 106 (164)
T ss_dssp -----------CSS------------------C------------SS-----CT-T-----SCSSSBCCEEETTTHHHHH
T ss_pred -----------CCC------------------c------------cc-----cC-C-----CCCceEEEEEChhhccccC
Confidence 000 0 00 00 0 0123568899999999999
Q ss_pred ccCChhHHhHHhhhCCeEEecCCCCCCCceEEEEecCC
Q 012477 300 GKGGAIINQIRQESGAAIKVDSSSTEGDDCLITVSSKE 337 (462)
Q Consensus 300 Gk~G~~Ik~I~~~sga~I~i~~~~~~~~~~~i~i~G~~ 337 (462)
|++|.+|++|+++|||+|.|++..+.+.+++|+|.|+.
T Consensus 107 Gk~G~~I~~i~~~tg~~I~i~~~~~~~~~~~v~I~G~~ 144 (164)
T 2jvz_A 107 GRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGPP 144 (164)
T ss_dssp CSSSHHHHHHHHHTCCEEEECCCCTTSSEEEEEEESCH
T ss_pred CCCcHhHHHHHHHHCCeEEEeCCCCCCCcEEEEEEcCH
Confidence 99999999999999999999987666678999999974
No 12
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.85 E-value=1.1e-20 Score=183.79 Aligned_cols=291 Identities=11% Similarity=0.088 Sum_probs=181.2
Q ss_pred CCceEEEEEeeCCccceeecCCc--hHHHHHHHHhCCeEEEcCCC-----CCCCceEEEEEcCCcccccccCCCCcCCHH
Q 012477 40 PEDTVYRYLCPIRKIGSIIGRGG--EIVKQLRIDTKSKIRIGETV-----PGSEERVVTVYSASDETNAFEDGDKFVSPA 112 (462)
Q Consensus 40 ~~~~~~~ilvp~~~~g~IIGk~G--~~Ik~i~~~tg~~I~v~~~~-----~~~~ervi~I~G~~e~~~~~~~~~~~v~~a 112 (462)
...+++++.||..+|++||||+| ++|++|+++|||+|+|++.. +......|+|+|.+++|
T Consensus 27 ~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enV------------- 93 (376)
T 3n89_A 27 PTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDV------------- 93 (376)
T ss_dssp TTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHH-------------
T ss_pred CCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHH-------------
Confidence 56899999999999999999999 99999999999999998754 12345789999999995
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCCCCceEEEEEEeCCceeeeecCCchHHHHHHhhcCceEEEecCCCCCCcCCCCCceE
Q 012477 113 QDALFKVHDRVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELV 192 (462)
Q Consensus 113 ~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~ip~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~r~v 192 (462)
+.|...+.+. ..+.+.+-+|...++. ..-+..|.+ ++.++++|.|....... +.....|
T Consensus 94 E~AR~~I~~l---------------~Pl~i~~elp~~~i~~--~~l~~~I~q-q~~y~V~I~Fp~~~~~~---~~~sd~V 152 (376)
T 3n89_A 94 DRARMLMRRN---------------CHFTVFMALSKMKMPL--HELQAHVRQ-NPIQNVEMSFVDAPEKN---GIVTTYL 152 (376)
T ss_dssp HHHHHHHHHS---------------CEEEEEEECTTCSSCH--HHHHHHHHH-CCCTTCEEEEEEEC--------CEEEE
T ss_pred HHHHHHHHhc---------------CCceEEEEccccccCc--chhhhhhcc-ceeCceEEEeCCccccc---CCCCCEE
Confidence 3444444331 1334555555433221 111334544 67899999986642211 1235689
Q ss_pred EEEcCHHHHHHHHHHHHHHHhcCCCCcccccccccCCCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCC
Q 012477 193 QISGEASVVKKALCQIASRLHDNPSRSQHLLASAISNSHSSSGSLVGPTAATPIVGIAPLMGPYGGYKGDTAGDWSRSLY 272 (462)
Q Consensus 193 ~I~G~~~~v~~A~~~I~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 272 (462)
+|+|...++..|...+..+++......
T Consensus 153 ~IrG~~~nv~~akeA~~~Ll~~l~~~e----------------------------------------------------- 179 (376)
T 3n89_A 153 RITAREKNQHELIEAAKRLNEILFRES----------------------------------------------------- 179 (376)
T ss_dssp EEEEEGGGHHHHHHHHHHHHHHHCC-------------------------------------------------------
T ss_pred EEEcChhhHHHHHHHHHHHHHHHHhhh-----------------------------------------------------
Confidence 999999777766655555554311000
Q ss_pred CCCCCCCCCcceEEEEeeeCCccccccccCC--hhHHhHHhhhCCeEEecCCCCC----CCceEEEEecCCcccccccHH
Q 012477 273 SAPRDDLSSKEFSLRLVCPVANIGGVIGKGG--AIINQIRQESGAAIKVDSSSTE----GDDCLITVSSKEFFEDTLSAT 346 (462)
Q Consensus 273 ~~p~~~~~~~~~~~~v~ip~~~~g~IIGk~G--~~Ik~I~~~sga~I~i~~~~~~----~~~~~i~i~G~~~~~~~~~~~ 346 (462)
......+++.+.|+..+|..|||++| ..|++|+++|||+|.|++..+. .....|+|+|+.. .+..+
T Consensus 180 -----~~~~~~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~~~~~~~ItItGs~e---~V~~A 251 (376)
T 3n89_A 180 -----PAPENNFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNETRGNIYEIKVVGNID---NVLKA 251 (376)
T ss_dssp -----CCCSSCEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC---------CCEEEEEEESCHH---HHHHH
T ss_pred -----cccccceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccccCCceEEEEEeCHH---HHHHH
Confidence 00123478999999999999999999 5679999999999999975432 2356899999752 23334
Q ss_pred HHHHHhhcCcccccccccCCCcceEEEEEecCCccceeecCCCchHHHHHHhhCceEEEecCCCCCCCCCCC---CceEE
Q 012477 347 IEAVVRLQPRCSEKIERDSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASED---DEMVQ 423 (462)
Q Consensus 347 ~~a~~~~~~~~~~~~~~~~~~~~~t~~i~Vp~~~~g~IIGk~G~~I~~I~~~sga~I~i~~~~~~P~~~~~~---~~~v~ 423 (462)
.+.+..+.| +...+.++.+..-.-.-.--..|..+.++.++.|.|.++..-|..--++ -..|+
T Consensus 252 rk~I~~lLP--------------v~l~Fd~~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (376)
T 3n89_A 252 RRYIMDLLP--------------ISMCFNIKNTDMAEPSRVSDRNIHMIIDESGIILKMTPSVYEPADLLSGEVPLNCAS 317 (376)
T ss_dssp HHHHHHTSE--------------EEEEEEEEGGGBC--------CBEEEECTTSCEEEEEEEEECCSSSSCCCEEEEEEE
T ss_pred HHHHHhhCC--------------EEEEEecCCcccccccccchhHHHHHHHhcCeEEEEeecCCCchhhcccccccceEE
Confidence 445555443 4444555544332222333344556778899999997653222100011 14577
Q ss_pred EEcCH---HHHHHHHHHHH
Q 012477 424 ISGDL---DLAKDALIQVM 439 (462)
Q Consensus 424 I~G~~---~~v~~A~~~I~ 439 (462)
|++-. .++..|...++
T Consensus 318 ~~s~e~n~~~~y~~~~~~l 336 (376)
T 3n89_A 318 LRSKEFNIKKLYTAYQKVL 336 (376)
T ss_dssp EEEEGGGHHHHHHHHHHHB
T ss_pred EEEEeccHHHHHHHHHHHh
Confidence 77754 45555555544
No 13
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.76 E-value=2.1e-18 Score=147.86 Aligned_cols=137 Identities=20% Similarity=0.318 Sum_probs=99.0
Q ss_pred ceEEEEeeeCCccccccccCChhHHhHHhhhCCeEEecCCCCCCCceEEEEecCCcccccccHHHHHHHhhcCccccccc
Q 012477 283 EFSLRLVCPVANIGGVIGKGGAIINQIRQESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEKIE 362 (462)
Q Consensus 283 ~~~~~v~ip~~~~g~IIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~~~i~i~G~~~~~~~~~~~~~a~~~~~~~~~~~~~ 362 (462)
.++.+|.||++.+|.+||++|++|+.|++++| |.+....++ . ..+.+.+.. ...+..+..+. .
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~g--I~ii~~~~~-~-~~~i~~~~~------p~~v~~~~~~l----~--- 65 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPG--VTAIDLDED-T-CTFHIYGED------QDAVKKARSFL----E--- 65 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTT--EEEEEEETT-T-TEEEEEESS------HHHHHHHHHHH----C---
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHC--CeEeccCCC-c-hheeeccCC------HHHHHHHHHhh----h---
Confidence 36889999999999999999999999999999 444332222 2 234444421 11121111110 0
Q ss_pred ccCCCcceEEEEEecCCccceeecCCCchHHHHHHhhCc-eEEEecCCCCCCCCCCCCc--eEEEEcCHHHHHHHHHHHH
Q 012477 363 RDSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKA-NIRILPKENLPKIASEDDE--MVQISGDLDLAKDALIQVM 439 (462)
Q Consensus 363 ~~~~~~~~t~~i~Vp~~~~g~IIGk~G~~I~~I~~~sga-~I~i~~~~~~P~~~~~~~~--~v~I~G~~~~v~~A~~~I~ 439 (462)
....++.||.+++|++|||+|++|+.|++.||| +|.|...++... ..+++ .|+|+|++++|+.|+.||.
T Consensus 66 ------~~e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~--~~~~~~~~vtI~G~~~~v~~Ak~li~ 137 (144)
T 2qnd_A 66 ------FAEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNV--PQEEGMVPFVFVGTKDSIANATVLLD 137 (144)
T ss_dssp ------EEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCC--CCCTTEEEEEEEEEHHHHHHHHHHHH
T ss_pred ------cceEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCc--cccCCeeEEEEEeCHHHHHHHHHHHH
Confidence 113789999999999999999999999999997 999987543210 12233 5899999999999999999
Q ss_pred HHHHh
Q 012477 440 TRLRA 444 (462)
Q Consensus 440 ~~l~~ 444 (462)
++|+.
T Consensus 138 ~~l~~ 142 (144)
T 2qnd_A 138 YHLNY 142 (144)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 99875
No 14
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.75 E-value=4.6e-18 Score=145.80 Aligned_cols=137 Identities=18% Similarity=0.230 Sum_probs=101.3
Q ss_pred ceEEEEEeeCCccceeecCCchHHHHHHHHhCCeEEEcCCCCCCCceEEEEEcCCcccccccCCCCcCCHHHHHHHHHHH
Q 012477 42 DTVYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHD 121 (462)
Q Consensus 42 ~~~~~ilvp~~~~g~IIGk~G~~Ik~i~~~tg~~I~v~~~~~~~~ervi~I~G~~e~~~~~~~~~~~v~~a~~a~~~i~~ 121 (462)
.++.+++||.+.+|++||++|++|++|++++| |++.+.. ..++..+...+.++.| ..+ ..++.
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~g--I~ii~~~-~~~~~~i~~~~~p~~v-------------~~~-~~~l~ 65 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPG--VTAIDLD-EDTCTFHIYGEDQDAV-------------KKA-RSFLE 65 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTT--EEEEEEE-TTTTEEEEEESSHHHH-------------HHH-HHHHC
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHC--CeEeccC-CCchheeeccCCHHHH-------------HHH-HHhhh
Confidence 56889999999999999999999999999999 5443221 2234443333444442 122 11111
Q ss_pred HHHHhhccCCCCCCCCCceEEEEEEeCCceeeeecCCchHHHHHHhhcCc-eEEEecCCCCCCcCCCCCc--eEEEEcCH
Q 012477 122 RVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGA-QIRILKDEHLPSCALRSDE--LVQISGEA 198 (462)
Q Consensus 122 ~i~~~~~~~~~~~~~~~~~~~~l~ip~~~~g~IIGk~G~~Ik~I~~~tga-~I~i~~~~~~p~~~~~~~r--~v~I~G~~ 198 (462)
.....+.||.+++|++|||+|.+|+.|++.||| +|+|.++++... ...++ .|+|+|++
T Consensus 66 -----------------~~e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~--~~~~~~~~vtI~G~~ 126 (144)
T 2qnd_A 66 -----------------FAEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNV--PQEEGMVPFVFVGTK 126 (144)
T ss_dssp -----------------EEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCC--CCCTTEEEEEEEEEH
T ss_pred -----------------cceEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCc--cccCCeeEEEEEeCH
Confidence 114889999999999999999999999999997 999987643211 12344 58999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 012477 199 SVVKKALCQIASRLHD 214 (462)
Q Consensus 199 ~~v~~A~~~I~~~l~~ 214 (462)
++|..|..+|.++|.+
T Consensus 127 ~~v~~Ak~li~~~l~~ 142 (144)
T 2qnd_A 127 DSIANATVLLDYHLNY 142 (144)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999875
No 15
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.60 E-value=1.3e-15 Score=138.83 Aligned_cols=144 Identities=20% Similarity=0.189 Sum_probs=102.1
Q ss_pred eEEEEEeeCCccceeecCCchHHHHHHHHhCCeEEEcCCCCCCCceEEEEEcCCcccccccCCCCcCCHHHHHHHHHHHH
Q 012477 43 TVYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDR 122 (462)
Q Consensus 43 ~~~~ilvp~~~~g~IIGk~G~~Ik~i~~~tg~~I~v~~~~~~~~ervi~I~G~~e~~~~~~~~~~~v~~a~~a~~~i~~~ 122 (462)
-..++.||.+.+|.|||++|++|+.|+++|||+|+++.. ++.|+|+|+..-- + ...+++|...+...
T Consensus 34 ~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~-----~g~V~I~~~~~t~-----d---~~~i~kA~~~I~~i 100 (219)
T 2e3u_A 34 QEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDSE-----TGEVWITSTKETE-----D---PLAVWKARDIVLAI 100 (219)
T ss_dssp CEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECTT-----TCEEEEEECTTCC-----S---HHHHHHHHHHHHHH
T ss_pred EEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEcC-----CCEEEEecCCCCC-----C---HHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999999732 4678999874110 0 01134444444332
Q ss_pred HH----HhhccCCCCCCCCCceEEEEEEeC-----------CceeeeecCCchHHHHHHhhcCceEEEecCCCCCCcCCC
Q 012477 123 VI----AEELRGDEDSDGGHQVTAKLLVPS-----------DQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALR 187 (462)
Q Consensus 123 i~----~~~~~~~~~~~~~~~~~~~l~ip~-----------~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~ 187 (462)
+. +....- ..+......+-++. ..+|+||||+|.+|+.|++.|||+|.|.
T Consensus 101 ~rg~~~e~g~~l----l~dd~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~----------- 165 (219)
T 2e3u_A 101 GRGFSPERAFRL----LNEGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVY----------- 165 (219)
T ss_dssp HTTCCHHHHGGG----GSTTCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEE-----------
T ss_pred hccCCcccccee----ccCCccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEEC-----------
Confidence 21 000000 00111122233332 2689999999999999999999999994
Q ss_pred CCceEEEEcCHHHHHHHHHHHHHHHhcC
Q 012477 188 SDELVQISGEASVVKKALCQIASRLHDN 215 (462)
Q Consensus 188 ~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 215 (462)
++.|+|.|+.++|..|...|.+++...
T Consensus 166 -~~~v~i~G~~~~i~~A~~~i~~li~g~ 192 (219)
T 2e3u_A 166 -GKTVAIIGNPIQIEIAKTAIEKLARGS 192 (219)
T ss_dssp -TTEEEEEECHHHHHHHHHHHHHHHTTC
T ss_pred -CeEEEEEeCHHHHHHHHHHHHHHHcCC
Confidence 347999999999999999999999764
No 16
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.57 E-value=2.9e-15 Score=114.02 Aligned_cols=73 Identities=26% Similarity=0.413 Sum_probs=64.1
Q ss_pred eEEEEEecCCccceeecCCCchHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHh
Q 012477 370 FTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRA 444 (462)
Q Consensus 370 ~t~~i~Vp~~~~g~IIGk~G~~I~~I~~~sga~I~i~~~~~~P~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~ 444 (462)
.+.++.||.+++|+|||++|++|++|++.|||+|+|.+..+.. +++.++.|+|+|++++++.|+.+|.+.+++
T Consensus 3 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~--~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 3 ELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFL--PGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp EEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCS--TTCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred eEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCC--CCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999998753322 256789999999999999999999998765
No 17
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.56 E-value=2.5e-15 Score=113.08 Aligned_cols=71 Identities=24% Similarity=0.468 Sum_probs=64.2
Q ss_pred cceEEEEEecCCccceeecCCCchHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhh
Q 012477 368 ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRAN 445 (462)
Q Consensus 368 ~~~t~~i~Vp~~~~g~IIGk~G~~I~~I~~~sga~I~i~~~~~~P~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~~ 445 (462)
..++.+|.||.+++|+|||++|++|++|+++|||+|+|++. +..+|.|+|+|+++++.+|+.+|.++|+++
T Consensus 3 ~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~-------~~~er~v~I~G~~~~v~~A~~~I~~~l~ed 73 (73)
T 2axy_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-------NCPERIITLAGPTNAIFKAFAMIIDKLEED 73 (73)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS-------CCSEEEEEEEECHHHHHHHHHHHHHHHHC-
T ss_pred ceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC-------CCCcEEEEEEeCHHHHHHHHHHHHHHHhcC
Confidence 35789999999999999999999999999999999999753 356799999999999999999999999863
No 18
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.56 E-value=8.4e-15 Score=112.96 Aligned_cols=73 Identities=26% Similarity=0.467 Sum_probs=65.7
Q ss_pred cceEEEEEecCCccceeecCCCchHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhh
Q 012477 368 ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRAN 445 (462)
Q Consensus 368 ~~~t~~i~Vp~~~~g~IIGk~G~~I~~I~~~sga~I~i~~~~~~P~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~~ 445 (462)
+.++.+|.||.+++|+||||+|++|++|+++|||+|+|++. .++.+++.|+|+|++++++.|+.+|.+.+++.
T Consensus 5 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~-----~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 5 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP-----LEGSEDRIITITGTQDQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp CCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCT-----TSCSSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCC-----CCCCCceEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 46889999999999999999999999999999999999753 12567799999999999999999999998864
No 19
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.55 E-value=3.2e-15 Score=113.64 Aligned_cols=73 Identities=29% Similarity=0.505 Sum_probs=65.9
Q ss_pred cceEEEEEecCCccceeecCCCchHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhh
Q 012477 368 ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRAN 445 (462)
Q Consensus 368 ~~~t~~i~Vp~~~~g~IIGk~G~~I~~I~~~sga~I~i~~~~~~P~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~~ 445 (462)
..++.+|.||.+++|+|||++|++|++|++.|||+|+|.+. .++.+++.|+|+|++++++.|+.+|.+.++++
T Consensus 3 ~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~-----~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~E 75 (76)
T 2p2r_A 3 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANP-----VEGSTDRQVTITGSAASISLAQYLINVRLSSE 75 (76)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCC-----CTTCSEEEEEEEECHHHHHHHHHHHHHHHTTC
T ss_pred CceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCC-----CCCCCeEEEEEEeCHHHHHHHHHHHHHHHHcc
Confidence 35789999999999999999999999999999999999753 23567899999999999999999999998764
No 20
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.55 E-value=8.4e-15 Score=133.42 Aligned_cols=140 Identities=19% Similarity=0.207 Sum_probs=98.7
Q ss_pred EEEEeeeCCccccccccCChhHHhHHhhhCCeEEecCCCCCCCceEEEEecCCcccc--cccHHH---HHHHhhc-Cccc
Q 012477 285 SLRLVCPVANIGGVIGKGGAIINQIRQESGAAIKVDSSSTEGDDCLITVSSKEFFED--TLSATI---EAVVRLQ-PRCS 358 (462)
Q Consensus 285 ~~~v~ip~~~~g~IIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~~~i~i~G~~~~~~--~~~~~~---~a~~~~~-~~~~ 358 (462)
..++.||.+.++.|||++|.+|+.|+++||++|.|+.. +..|+|.+++...+ .+..+. .++.+-+ +...
T Consensus 35 i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~-----~g~V~I~~~~~t~d~~~i~kA~~~I~~i~rg~~~e~g 109 (219)
T 2e3u_A 35 EEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDSE-----TGEVWITSTKETEDPLAVWKARDIVLAIGRGFSPERA 109 (219)
T ss_dssp EEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECTT-----TCEEEEEECTTCCSHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred EEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEcC-----CCEEEEecCCCCCCHHHHHHHHHHHHHHhccCCcccc
Confidence 66899999999999999999999999999999999852 35678887642211 111122 2221100 0000
Q ss_pred ccccccCCCcceEEEEEecC-----------CccceeecCCCchHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcC
Q 012477 359 EKIERDSGLISFTTRLLVPT-----------SRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGD 427 (462)
Q Consensus 359 ~~~~~~~~~~~~t~~i~Vp~-----------~~~g~IIGk~G~~I~~I~~~sga~I~i~~~~~~P~~~~~~~~~v~I~G~ 427 (462)
..+..+ ...-..+.++. ..+|+||||+|++|+.|++.|||+|.|.. +.|+|.|+
T Consensus 110 ~~ll~d---d~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~~------------~~v~i~G~ 174 (219)
T 2e3u_A 110 FRLLNE---GEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVYG------------KTVAIIGN 174 (219)
T ss_dssp GGGGST---TCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEET------------TEEEEEEC
T ss_pred ceeccC---CccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEECC------------eEEEEEeC
Confidence 011111 11222233331 26899999999999999999999999952 47999999
Q ss_pred HHHHHHHHHHHHHHHHh
Q 012477 428 LDLAKDALIQVMTRLRA 444 (462)
Q Consensus 428 ~~~v~~A~~~I~~~l~~ 444 (462)
+++++.|+.+|++.|..
T Consensus 175 ~~~i~~A~~~i~~li~g 191 (219)
T 2e3u_A 175 PIQIEIAKTAIEKLARG 191 (219)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 99999999999999854
No 21
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.54 E-value=5.7e-15 Score=113.97 Aligned_cols=73 Identities=29% Similarity=0.487 Sum_probs=64.9
Q ss_pred cceEEEEEecCCccceeecCCCchHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhh
Q 012477 368 ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRAN 445 (462)
Q Consensus 368 ~~~t~~i~Vp~~~~g~IIGk~G~~I~~I~~~sga~I~i~~~~~~P~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~~ 445 (462)
..++.+|.||.+++|+|||++|++|++|+++|||+|+|.+. .++++++.|+|+|+++++++|+.+|.+.+++.
T Consensus 4 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~-----~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 4 SQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANP-----VEGSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp TCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCC-----CTTCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred CcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecC-----CCCCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 46889999999999999999999999999999999999753 23567899999999999999999999998776
No 22
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.52 E-value=6.6e-15 Score=114.97 Aligned_cols=77 Identities=25% Similarity=0.354 Sum_probs=67.5
Q ss_pred eEEEEEecCCccceeecCCCchHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhhhcc
Q 012477 370 FTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANLFD 448 (462)
Q Consensus 370 ~t~~i~Vp~~~~g~IIGk~G~~I~~I~~~sga~I~i~~~~~~P~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~~~~~ 448 (462)
.+.+|.||.+++|+|||++|++|++|++.|||+|+|.+..++. +++.++.|+|+|++++++.|+.+|.+.|.+....
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~--~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~~~ 79 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFL--PGTRNRRVTITGSPAATQAAQYLISQRVTYEQGV 79 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBS--TTSCEEEEEEESSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCC--CCCCceEEEEEcCHHHHHHHHHHHHHHHhccccc
Confidence 5788999999999999999999999999999999998653321 2567899999999999999999999999887544
No 23
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.51 E-value=1.9e-14 Score=108.27 Aligned_cols=70 Identities=29% Similarity=0.571 Sum_probs=65.2
Q ss_pred CceEEEEEEeCCceeeeecCCchHHHHHHhhcCceEEEecCCCCCCcCCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 012477 138 HQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (462)
Q Consensus 138 ~~~~~~l~ip~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~ 214 (462)
..+.++|+||.+.+|.|||++|++|++|+++|||+|+++++ +..+|+|+|.|+++++.+|..+|.++|++
T Consensus 3 ~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~-------~~~er~v~I~G~~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-------NCPERIITLAGPTNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS-------CCSEEEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred ceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC-------CCCcEEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 46799999999999999999999999999999999999865 25689999999999999999999999986
No 24
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.50 E-value=1.5e-14 Score=113.28 Aligned_cols=75 Identities=27% Similarity=0.465 Sum_probs=67.0
Q ss_pred CCcceEEEEEecCCccceeecCCCchHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhh
Q 012477 366 GLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRAN 445 (462)
Q Consensus 366 ~~~~~t~~i~Vp~~~~g~IIGk~G~~I~~I~~~sga~I~i~~~~~~P~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~~ 445 (462)
....++.+|.||.+++|+||||+|++|++|+++|||+|+|++. .++.+++.|+|+|+++++++|+.+|.+.+++.
T Consensus 10 ~~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~-----~~~~~~~~v~I~G~~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 10 GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP-----LEGSEDRIITITGTQDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp CCCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSC-----CSSSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCC-----CCCCCccEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 3467899999999999999999999999999999999999753 12467899999999999999999999998874
No 25
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.50 E-value=3.4e-14 Score=111.98 Aligned_cols=74 Identities=19% Similarity=0.338 Sum_probs=66.5
Q ss_pred cceEEEEEecCCccceeecCCCchHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhhh
Q 012477 368 ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANL 446 (462)
Q Consensus 368 ~~~t~~i~Vp~~~~g~IIGk~G~~I~~I~~~sga~I~i~~~~~~P~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~~~ 446 (462)
..++.+|.||.+++|+|||++|++|++|+++|||+|+|.+.. ++..++.|+|+|++++|++|+.+|.+.|++..
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~-----~g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~~ 86 (92)
T 1x4n_A 13 SVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDS-----GGLPERSCMLTGTPESVQSAKRLLDQIVEKGR 86 (92)
T ss_dssp CCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCC-----TTCSEEEEEEEECHHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCC-----CCCCccEEEEEeCHHHHHHHHHHHHHHHHhcc
Confidence 468899999999999999999999999999999999997542 24568999999999999999999999998764
No 26
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=2e-14 Score=110.42 Aligned_cols=68 Identities=16% Similarity=0.275 Sum_probs=60.7
Q ss_pred cceEEEEEecCCccceeecCCCchHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHH
Q 012477 368 ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLR 443 (462)
Q Consensus 368 ~~~t~~i~Vp~~~~g~IIGk~G~~I~~I~~~sga~I~i~~~~~~P~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~ 443 (462)
..++.+|.||.+++|+||||+|++||+|+++|||+|+|++. ++++.|+|+|+++++++|+.+|.+.+.
T Consensus 8 ~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~--------~~~~~v~ItG~~e~v~~A~~~I~~~i~ 75 (83)
T 2dgr_A 8 GQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGR--------DKEPVFAVTGMPENVDRAREEIEAHIT 75 (83)
T ss_dssp CSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCS--------SSCCEEEEEECTTTHHHHHHHHHHHHH
T ss_pred CceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCC--------CCCCeEEEEcCHHHHHHHHHHHHHHHh
Confidence 45889999999999999999999999999999999999643 235789999999999999999998644
No 27
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.47 E-value=9.6e-14 Score=107.78 Aligned_cols=73 Identities=23% Similarity=0.402 Sum_probs=64.1
Q ss_pred cceEEEEEecCCccceeecCCCchHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHH
Q 012477 368 ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLR 443 (462)
Q Consensus 368 ~~~t~~i~Vp~~~~g~IIGk~G~~I~~I~~~sga~I~i~~~~~~P~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~ 443 (462)
...+.+|.||.+++|.||||+|++|++|+++|||+|.|.+.... ....+|.|+|+|++++++.|+.+|.+.++
T Consensus 12 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~---~~~~er~v~I~G~~~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 12 NGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQ---NTNVDKPLRIIGDPYKVQQACEMVMDILR 84 (85)
T ss_dssp SSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCS---STTSCEEEEEEECHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCC---CCCCceEEEEEeCHHHHHHHHHHHHHHhc
Confidence 45778999999999999999999999999999999999764321 24568899999999999999999998875
No 28
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.46 E-value=6.7e-14 Score=113.43 Aligned_cols=74 Identities=20% Similarity=0.334 Sum_probs=65.2
Q ss_pred EEEEEecCCccceeecCCCchHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhhh
Q 012477 371 TTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANL 446 (462)
Q Consensus 371 t~~i~Vp~~~~g~IIGk~G~~I~~I~~~sga~I~i~~~~~~P~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~~~ 446 (462)
+.+|.||.+++|+||||+|++|++|+++|||+|+|.+... | ..+.+++.|+|+|++++|++|+.+|.++|++..
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~-~-~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~~ 81 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLP-P-NGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGPL 81 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCC-T-TCCTTEEEEEEESCHHHHHHHHHHHHHHSCSCC
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccC-C-CCCCCceEEEEECCHHHHHHHHHHHHHHHhccc
Confidence 7789999999999999999999999999999999976532 2 234567999999999999999999999988764
No 29
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.46 E-value=1.1e-13 Score=105.27 Aligned_cols=73 Identities=26% Similarity=0.443 Sum_probs=64.6
Q ss_pred eEEEEEEeCCceeeeecCCchHHHHHHhhcCceEEEecCCCCCCcCCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 012477 140 VTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (462)
Q Consensus 140 ~~~~l~ip~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~ 214 (462)
.+++|+||.+++|.|||++|++|++|+++|||+|+|.++++. ++++.+|.|+|+|+++++.+|..+|.+++.+
T Consensus 3 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~--~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 3 ELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEF--LPGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp EEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCC--STTCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred eEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCC--CCCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 578999999999999999999999999999999999875332 2247899999999999999999999998865
No 30
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.45 E-value=1.1e-13 Score=111.61 Aligned_cols=73 Identities=18% Similarity=0.291 Sum_probs=64.0
Q ss_pred eEEEEEecCCccceeecCCCchHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhhhc
Q 012477 370 FTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANLF 447 (462)
Q Consensus 370 ~t~~i~Vp~~~~g~IIGk~G~~I~~I~~~sga~I~i~~~~~~P~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~~~~ 447 (462)
.+.+|.||.+++++||||+|++|++|+++|||+|+|.+++ ....+|.|+|+|+++++++|+.+|.+.+++...
T Consensus 11 ~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~-----~~~~er~V~I~G~~e~v~~A~~~I~~ii~~~~~ 83 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD-----GTGPEKIAHIMGPPDRCEHAARIINDLLQSLRS 83 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSC-----SSSSEEEEEEESSHHHHHHHHHHHHHHHHHHC-
T ss_pred eEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCC-----CCCceeEEEEEeCHHHHHHHHHHHHHHHhcccc
Confidence 4678999999999999999999999999999999997542 235678999999999999999999999887654
No 31
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.45 E-value=1.2e-13 Score=106.46 Aligned_cols=74 Identities=36% Similarity=0.593 Sum_probs=65.9
Q ss_pred CCceEEEEEEeCCceeeeecCCchHHHHHHhhcCceEEEecCCCCCCcCCCCCceEEEEcCHHHHHHHHHHHHHHHhcC
Q 012477 137 GHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHDN 215 (462)
Q Consensus 137 ~~~~~~~l~ip~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 215 (462)
...++.+|+||.+++|.|||++|++|++|+++|||+|+|.+. +.++.+|.|+|+|+++++.+|..+|.+++.+.
T Consensus 3 g~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~-----~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 3 GSQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANP-----VEGSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp TTCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCC-----CTTCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred CCcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecC-----CCCCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 356899999999999999999999999999999999999764 22478999999999999999999999999875
No 32
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.45 E-value=2.2e-13 Score=104.95 Aligned_cols=73 Identities=30% Similarity=0.553 Sum_probs=66.1
Q ss_pred CceEEEEEEeCCceeeeecCCchHHHHHHhhcCceEEEecCCCCCCcCCCCCceEEEEcCHHHHHHHHHHHHHHHhcC
Q 012477 138 HQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHDN 215 (462)
Q Consensus 138 ~~~~~~l~ip~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 215 (462)
..++.+|+||.+++|.||||+|++|++|+++|||+|+|.+. .| ++.+|.|+|+|++++|.+|..+|.+++.+.
T Consensus 5 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~--~~---~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 5 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP--LE---GSEDRIITITGTQDQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp CCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCT--TS---CSSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCC--CC---CCCceEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 46899999999999999999999999999999999999753 22 467899999999999999999999999873
No 33
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.45 E-value=7.4e-14 Score=110.48 Aligned_cols=75 Identities=21% Similarity=0.392 Sum_probs=66.1
Q ss_pred cceEEEEEecCCccceeecCCCchHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhh
Q 012477 368 ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRAN 445 (462)
Q Consensus 368 ~~~t~~i~Vp~~~~g~IIGk~G~~I~~I~~~sga~I~i~~~~~~P~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~~ 445 (462)
..++.+|.||.+++|+||||+|++|++|+++|||+|+|.+.... ...+++.|+|+|++++++.|+.+|.+.|++.
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~---~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 13 GNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQ---NTGADKPLRITGDPYKVQQAKEMVLELIRDQ 87 (94)
T ss_dssp CCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCC---SSCSCEEEEEEECTTTHHHHHHHHHHHHCCC
T ss_pred CcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCC---CCCCceEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 46889999999999999999999999999999999999765321 1346899999999999999999999998764
No 34
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.44 E-value=1e-13 Score=105.28 Aligned_cols=73 Identities=34% Similarity=0.584 Sum_probs=66.3
Q ss_pred CceEEEEEEeCCceeeeecCCchHHHHHHhhcCceEEEecCCCCCCcCCCCCceEEEEcCHHHHHHHHHHHHHHHhcC
Q 012477 138 HQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHDN 215 (462)
Q Consensus 138 ~~~~~~l~ip~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 215 (462)
..++.+|+||.+++|.|||++|++|++|+++|||+|++.+. ++++.+|.|+|+|+++++.+|..+|.+++.++
T Consensus 3 ~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~-----~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~E 75 (76)
T 2p2r_A 3 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANP-----VEGSTDRQVTITGSAASISLAQYLINVRLSSE 75 (76)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCC-----CTTCSEEEEEEEECHHHHHHHHHHHHHHHTTC
T ss_pred CceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCC-----CCCCCeEEEEEEeCHHHHHHHHHHHHHHHHcc
Confidence 46789999999999999999999999999999999999763 23578999999999999999999999999763
No 35
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.44 E-value=4.4e-13 Score=118.96 Aligned_cols=65 Identities=20% Similarity=0.245 Sum_probs=59.1
Q ss_pred EEEEEEeCCceeeeecCCchHHHHHHhhcCceEEEecCCCCCCcCCCCCceEEEE-----cCHHHHHHHHHHHHHHHhcC
Q 012477 141 TAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQIS-----GEASVVKKALCQIASRLHDN 215 (462)
Q Consensus 141 ~~~l~ip~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~r~v~I~-----G~~~~v~~A~~~I~~~l~~~ 215 (462)
..+++||...+|.|||++|++++.|++.+|++|++.. .++.++|. |++.++.+|..+|..+.+..
T Consensus 5 ~~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~----------~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf 74 (191)
T 1tua_A 5 RIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDT----------ENSMVIVEPEAEGIPPVNLMKAAEVVKAISLGF 74 (191)
T ss_dssp CEEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEET----------TTTEEEEEESSTTSCHHHHHHHHHHHHHHHHTC
T ss_pred ceEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEc----------CCCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCC
Confidence 3689999999999999999999999999999999964 36788888 99999999999999988764
No 36
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.43 E-value=2.2e-13 Score=109.86 Aligned_cols=76 Identities=20% Similarity=0.298 Sum_probs=65.7
Q ss_pred cceEEEEEecCCccceeecCCCchHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhhh
Q 012477 368 ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANL 446 (462)
Q Consensus 368 ~~~t~~i~Vp~~~~g~IIGk~G~~I~~I~~~sga~I~i~~~~~~P~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~~~ 446 (462)
...+.+|.||.+++|+|||++|++|++|+++|||+|+|.+... ....+++.|+|+|++++++.|+.+|.+.+++..
T Consensus 13 ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~---~~~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~~ 88 (104)
T 1we8_A 13 TPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESE---GTLLLSRLIKISGTQKEVAAAKHLILEKVSEDE 88 (104)
T ss_dssp CEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSC---CSSSSEEEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCC---CCCCCcceEEEEcCHHHHHHHHHHHHHHHhhCh
Confidence 3578899999999999999999999999999999999976422 112357999999999999999999999997663
No 37
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.41 E-value=2e-13 Score=121.11 Aligned_cols=143 Identities=19% Similarity=0.177 Sum_probs=99.6
Q ss_pred EEEEeeCCccceeecCCchHHHHHHHHhCCeEEEcCCCCCCCceEEEEEcCCcccccccCCCCcCCHHHHHHHHHHHHHH
Q 012477 45 YRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVI 124 (462)
Q Consensus 45 ~~ilvp~~~~g~IIGk~G~~Ik~i~~~tg~~I~v~~~~~~~~ervi~I~G~~e~~~~~~~~~~~v~~a~~a~~~i~~~i~ 124 (462)
++++||.+.+|.|||++|++++.|++.++++|.++. .++.++|+.+....+ ....+.|...+.....
T Consensus 6 ~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~-----~~~~V~i~t~~~t~d--------p~~i~KA~dlI~ai~r 72 (191)
T 1tua_A 6 IYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDT-----ENSMVIVEPEAEGIP--------PVNLMKAAEVVKAISL 72 (191)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEET-----TTTEEEEEESSTTSC--------HHHHHHHHHHHHHHHH
T ss_pred eEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEc-----CCCeEEEEeCCCCCC--------HHHHHHHHHHHHHHHc
Confidence 689999999999999999999999999999999964 367788883322210 0012333333321111
Q ss_pred H---hhccCCCCCCCCCceEEEEEEeC----------CceeeeecCCchHHHHHHhhcCceEEEecCCCCCCcCCCCCce
Q 012477 125 A---EELRGDEDSDGGHQVTAKLLVPS----------DQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDEL 191 (462)
Q Consensus 125 ~---~~~~~~~~~~~~~~~~~~l~ip~----------~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~r~ 191 (462)
. ++... ...+..+...+-++. ...|+|||++|.+++.|+..|||+|.|. ++.
T Consensus 73 gf~~e~A~~---Ll~Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~------------~~~ 137 (191)
T 1tua_A 73 GFPPEKAFR---LLEEDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVG------------EYE 137 (191)
T ss_dssp TCCHHHHGG---GGSTTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEEC------------SSE
T ss_pred CCCHHHhhh---cccCcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEc------------CCE
Confidence 0 00000 001122233333442 3579999999999999999999999984 338
Q ss_pred EEEEcCHHHHHHHHHHHHHHHhcC
Q 012477 192 VQISGEASVVKKALCQIASRLHDN 215 (462)
Q Consensus 192 v~I~G~~~~v~~A~~~I~~~l~~~ 215 (462)
|.|.|+.+++..|...|.+++...
T Consensus 138 v~i~G~~~~i~~Ar~~i~~li~g~ 161 (191)
T 1tua_A 138 VAIIGDYERAMAAKQAIEMLAEGR 161 (191)
T ss_dssp EEEEEEHHHHHHHHHHHHHHHTTC
T ss_pred EEEEeChHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999753
No 38
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.41 E-value=1.8e-13 Score=102.30 Aligned_cols=66 Identities=24% Similarity=0.341 Sum_probs=59.3
Q ss_pred ceEEEEEecCCccceeecCCCchHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHH
Q 012477 369 SFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTR 441 (462)
Q Consensus 369 ~~t~~i~Vp~~~~g~IIGk~G~~I~~I~~~sga~I~i~~~~~~P~~~~~~~~~v~I~G~~~~v~~A~~~I~~~ 441 (462)
..+.+|.||.++||.|||+||++|++|+++|||+|+|+++ ++.++.|+|+|+++++++|+.+|.+.
T Consensus 4 ~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~-------g~~~~~V~I~G~~~~v~~A~~~I~~i 69 (71)
T 1vig_A 4 MDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPD-------SEKSNLIRIEGDPQGVQQAKRELLEL 69 (71)
T ss_dssp CEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCC-------CSSSEEEEEEESSHHHHHHHHHHHHT
T ss_pred eEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCC-------CCcccEEEEEcCHHHHHHHHHHHHHH
Confidence 4678999999999999999999999999999999999643 23568999999999999999999874
No 39
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.40 E-value=6.7e-13 Score=104.86 Aligned_cols=74 Identities=16% Similarity=0.199 Sum_probs=64.8
Q ss_pred cceEEEEEecCCccceeecCCCchHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhhhc
Q 012477 368 ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANLF 447 (462)
Q Consensus 368 ~~~t~~i~Vp~~~~g~IIGk~G~~I~~I~~~sga~I~i~~~~~~P~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~~~~ 447 (462)
..++.+|.||.++||.|||++|++|++|+++|||+|+|+++. +.+++.|+|+|++++++.|+.+|...+++...
T Consensus 15 ~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g------~~~~~~V~I~G~~e~v~~A~~~I~~i~~e~~~ 88 (95)
T 2ctm_A 15 QMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSG------APDPNCVTVTGLPENVEEAIDHILNLEEEYLA 88 (95)
T ss_dssp TCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTT------CSCTTEEEEESCHHHHHHHHHHHHHHHHHHHT
T ss_pred ccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCC------CCCCcEEEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999996431 23467999999999999999999998777654
No 40
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.40 E-value=7.4e-13 Score=102.72 Aligned_cols=75 Identities=21% Similarity=0.475 Sum_probs=66.1
Q ss_pred CCceEEEEEEeCCceeeeecCCchHHHHHHhhcCceEEEecCCCCCCcCCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 012477 137 GHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (462)
Q Consensus 137 ~~~~~~~l~ip~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~ 214 (462)
......+|.||.+.+|.||||+|++|++|+++|||+|.+.++...+ .+.+|.|+|+|+++++.+|..+|.+++.+
T Consensus 11 ~~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~---~~~er~v~I~G~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 11 QNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQN---TNVDKPLRIIGDPYKVQQACEMVMDILRE 85 (85)
T ss_dssp CSSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSS---TTSCEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCC---CCCceEEEEEeCHHHHHHHHHHHHHHhcC
Confidence 3457889999999999999999999999999999999998753322 37899999999999999999999998864
No 41
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.39 E-value=3.6e-13 Score=106.45 Aligned_cols=72 Identities=17% Similarity=0.254 Sum_probs=63.6
Q ss_pred cceEEEEEecCCccceeecCCCchHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhhh
Q 012477 368 ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANL 446 (462)
Q Consensus 368 ~~~t~~i~Vp~~~~g~IIGk~G~~I~~I~~~sga~I~i~~~~~~P~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~~~ 446 (462)
..++.+|.||.+++|.|||+||++|++|+++|||+|+|++. ++.++.|+|+|+++++++|+.+|.+.+++..
T Consensus 15 ~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~-------~~~~~~V~I~G~~e~v~~A~~~I~~i~~~~~ 86 (94)
T 2cte_A 15 TQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRP-------DDPSNQIKITGTKEGIEKARHEVLLISAEQD 86 (94)
T ss_dssp SCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCT-------TSSCCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCC-------CCCCCeEEEEECHHHHHHHHHHHHHHhhccc
Confidence 35889999999999999999999999999999999999643 2235799999999999999999999887653
No 42
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.39 E-value=2.9e-13 Score=105.57 Aligned_cols=74 Identities=26% Similarity=0.441 Sum_probs=65.9
Q ss_pred eEEEEEEeCCceeeeecCCchHHHHHHhhcCceEEEecCCCCCCcCCCCCceEEEEcCHHHHHHHHHHHHHHHhcC
Q 012477 140 VTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHDN 215 (462)
Q Consensus 140 ~~~~l~ip~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 215 (462)
.+++|+||.+++|.|||++|++|++|+++|||+|+|.++++. .+++.+|.|+|+|+++++..|..+|.+++.+.
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~--~~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEF--LPGTRNRRVTITGSPAATQAAQYLISQRVTYE 76 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCB--STTSCEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCC--CCCCCceEEEEEcCHHHHHHHHHHHHHHHhcc
Confidence 478999999999999999999999999999999999875331 22478999999999999999999999999763
No 43
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.38 E-value=8.8e-13 Score=104.68 Aligned_cols=74 Identities=20% Similarity=0.277 Sum_probs=64.1
Q ss_pred cceEEEEEecCCccceeecCCCchHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhh
Q 012477 368 ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRAN 445 (462)
Q Consensus 368 ~~~t~~i~Vp~~~~g~IIGk~G~~I~~I~~~sga~I~i~~~~~~P~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~~ 445 (462)
..++..|.||.++|+.|||++|++|++|+++|||+|+|++... | +..++.|+|+|++++++.|+.+|...+++.
T Consensus 15 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~-~---~~~~~~V~I~G~~e~v~~A~~~I~~iv~e~ 88 (97)
T 2ctl_A 15 RSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDD-G---NQPQDQITITGYEKNTEAARDAILRIVGEL 88 (97)
T ss_dssp TTCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTT-C---SSCSSEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred cceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCC-C---CCCccEEEEEeCHHHHHHHHHHHHHHHHHH
Confidence 3578999999999999999999999999999999999975432 1 236789999999999999999999877654
No 44
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.38 E-value=8.7e-13 Score=103.85 Aligned_cols=59 Identities=27% Similarity=0.436 Sum_probs=54.8
Q ss_pred CCceEEEEEeeCCccceeecCCchHHHHHHHHhCCeEEEcCCCCCCCceEEEEEcCCcc
Q 012477 40 PEDTVYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGETVPGSEERVVTVYSASDE 98 (462)
Q Consensus 40 ~~~~~~~ilvp~~~~g~IIGk~G~~Ik~i~~~tg~~I~v~~~~~~~~ervi~I~G~~e~ 98 (462)
...++++|+||.+++|+||||+|++|++|+++|||+|+|++..++..+|.|+|+|++++
T Consensus 12 ~~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G~~e~ 70 (92)
T 1x4n_A 12 RSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPES 70 (92)
T ss_dssp CCCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEECHHH
T ss_pred CCCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEeCHHH
Confidence 45789999999999999999999999999999999999998766788999999999877
No 45
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.38 E-value=3.9e-13 Score=105.23 Aligned_cols=75 Identities=32% Similarity=0.597 Sum_probs=67.5
Q ss_pred CCCceEEEEEEeCCceeeeecCCchHHHHHHhhcCceEEEecCCCCCCcCCCCCceEEEEcCHHHHHHHHHHHHHHHhcC
Q 012477 136 GGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHDN 215 (462)
Q Consensus 136 ~~~~~~~~l~ip~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 215 (462)
....++.+|.||.+++|.||||+|++|++|+++|||+|+|.+. .| ++.+|.|+|+|++++|.+|+.+|.+++.+.
T Consensus 10 ~~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~--~~---~~~~~~v~I~G~~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 10 GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP--LE---GSEDRIITITGTQDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp CCCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSC--CS---SSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCC--CC---CCCccEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 3567899999999999999999999999999999999999753 22 477999999999999999999999999874
No 46
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.37 E-value=6.6e-13 Score=107.54 Aligned_cols=73 Identities=26% Similarity=0.419 Sum_probs=64.7
Q ss_pred EEEEEEeCCceeeeecCCchHHHHHHhhcCceEEEecCCCCCCcCCCCCceEEEEcCHHHHHHHHHHHHHHHhcC
Q 012477 141 TAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHDN 215 (462)
Q Consensus 141 ~~~l~ip~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 215 (462)
+++|+||.++++.||||+|++|++|+++|||+|+|.++.. + .....+|.|+|+|+.++|.+|+.+|.+++.+.
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~-~-~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~ 80 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLP-P-NGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGP 80 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCC-T-TCCTTEEEEEEESCHHHHHHHHHHHHHHSCSC
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccC-C-CCCCCceEEEEECCHHHHHHHHHHHHHHHhcc
Confidence 7899999999999999999999999999999999987532 1 12356899999999999999999999999875
No 47
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=3e-13 Score=103.83 Aligned_cols=71 Identities=23% Similarity=0.346 Sum_probs=64.3
Q ss_pred CCCceEEEEEEeCCceeeeecCCchHHHHHHhhcCceEEEecCCCCCCcCCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 012477 136 GGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (462)
Q Consensus 136 ~~~~~~~~l~ip~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~ 214 (462)
.....+.+|.||.+++|.||||+|++||+|+++|||+|++++. ..+++++|+|++++|.+|..+|.+++..
T Consensus 6 ~~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~--------~~~~~v~ItG~~e~v~~A~~~I~~~i~~ 76 (83)
T 2dgr_A 6 SGGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGR--------DKEPVFAVTGMPENVDRAREEIEAHITL 76 (83)
T ss_dssp SCCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCS--------SSCCEEEEEECTTTHHHHHHHHHHHHHS
T ss_pred CCCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCC--------CCCCeEEEEcCHHHHHHHHHHHHHHHhc
Confidence 3466899999999999999999999999999999999999764 2368999999999999999999998765
No 48
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.36 E-value=5.7e-13 Score=105.36 Aligned_cols=77 Identities=22% Similarity=0.502 Sum_probs=68.2
Q ss_pred CCCceEEEEEEeCCceeeeecCCchHHHHHHhhcCceEEEecCCCCCCcCCCCCceEEEEcCHHHHHHHHHHHHHHHhcC
Q 012477 136 GGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHDN 215 (462)
Q Consensus 136 ~~~~~~~~l~ip~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 215 (462)
....++.+|+||.+.++.||||+|++|++|+++|||+|+|.++.... ...+|.|+|+|++++|.+|+.+|.+++.+.
T Consensus 11 ~p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~---~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 11 GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN---TGADKPLRITGDPYKVQQAKEMVLELIRDQ 87 (94)
T ss_dssp CCCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCS---SCSCEEEEEEECTTTHHHHHHHHHHHHCCC
T ss_pred CCCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCC---CCCceEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 34678999999999999999999999999999999999998753221 257999999999999999999999999874
No 49
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.33 E-value=1.3e-12 Score=104.99 Aligned_cols=71 Identities=21% Similarity=0.245 Sum_probs=62.8
Q ss_pred ceEEEEEecCCccceeecCCCchHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhhh
Q 012477 369 SFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANL 446 (462)
Q Consensus 369 ~~t~~i~Vp~~~~g~IIGk~G~~I~~I~~~sga~I~i~~~~~~P~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~~~ 446 (462)
..+.+|.||.++||.|||+||++|++|+++|||+|+|++. +...+.|+|+|++++++.|+.+|.+.+++..
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~-------g~~~~~V~I~G~~e~v~~A~~~I~~i~~e~e 86 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAP-------ELQSDIIAITGLAANLDRAKAGLLERVKELQ 86 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCT-------TTTCCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCC-------CCCcceEEEEcCHHHHHHHHHHHHHHHhhHH
Confidence 4788999999999999999999999999999999999643 2234699999999999999999999877653
No 50
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.33 E-value=1.6e-12 Score=104.70 Aligned_cols=71 Identities=23% Similarity=0.453 Sum_probs=64.0
Q ss_pred eEEEEEEeCCceeeeecCCchHHHHHHhhcCceEEEecCCCCCCcCCCCCceEEEEcCHHHHHHHHHHHHHHHhcC
Q 012477 140 VTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHDN 215 (462)
Q Consensus 140 ~~~~l~ip~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 215 (462)
.+++|+||.++++.||||+|++|++|+++|||+|+|.+++. .+.+|.|+|+|++++|.+|+.+|.+++.+.
T Consensus 11 ~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~-----~~~er~V~I~G~~e~v~~A~~~I~~ii~~~ 81 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDG-----TGPEKIAHIMGPPDRCEHAARIINDLLQSL 81 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCS-----SSSEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCC-----CCceeEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 47899999999999999999999999999999999976532 356899999999999999999999999873
No 51
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.33 E-value=3.1e-12 Score=103.13 Aligned_cols=79 Identities=28% Similarity=0.445 Sum_probs=68.5
Q ss_pred CCCceEEEEEEeCCceeeeecCCchHHHHHHhhcCceEEEecCCCCCCcCCCCCceEEEEcCHHHHHHHHHHHHHHHhcC
Q 012477 136 GGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHDN 215 (462)
Q Consensus 136 ~~~~~~~~l~ip~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 215 (462)
.....+.+|+||.+.+|.|||++|++|++|+++|||+|+|.+..... .+.++.|+|+|+.+++.+|+.+|.+++.+.
T Consensus 11 ~~ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~---~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~ 87 (104)
T 1we8_A 11 ENTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGT---LLLSRLIKISGTQKEVAAAKHLILEKVSED 87 (104)
T ss_dssp SSCEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCS---SSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCC---CCCcceEEEEcCHHHHHHHHHHHHHHHhhC
Confidence 44668899999999999999999999999999999999998653211 246899999999999999999999999875
Q ss_pred CC
Q 012477 216 PS 217 (462)
Q Consensus 216 ~~ 217 (462)
+.
T Consensus 88 ~~ 89 (104)
T 1we8_A 88 EE 89 (104)
T ss_dssp HH
T ss_pred hH
Confidence 44
No 52
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.31 E-value=1.7e-12 Score=96.88 Aligned_cols=68 Identities=19% Similarity=0.301 Sum_probs=61.1
Q ss_pred CceEEEEEEeCCceeeeecCCchHHHHHHhhcCceEEEecCCCCCCcCCCCCceEEEEcCHHHHHHHHHHHHHHH
Q 012477 138 HQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRL 212 (462)
Q Consensus 138 ~~~~~~l~ip~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l 212 (462)
...+..|.||.++++.|||++|.+|++|+++|||+|+|+++. ..++.|+|+|+.+++.+|+.+|.+++
T Consensus 3 ~~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g-------~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 3 RMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDS-------EKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp CCEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCC-------SSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred ceEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCC-------CcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 456889999999999999999999999999999999997652 35789999999999999999998764
No 53
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.26 E-value=5.3e-12 Score=99.67 Aligned_cols=74 Identities=18% Similarity=0.245 Sum_probs=65.8
Q ss_pred CCCCceEEEEEEeCCceeeeecCCchHHHHHHhhcCceEEEecCCCCCCcCCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 012477 135 DGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (462)
Q Consensus 135 ~~~~~~~~~l~ip~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~ 214 (462)
.....++..|.||..+++.|||++|.+|++|+++|||+|+|+.+.. ..++.|+|+|++++|.+|+.+|..++.+
T Consensus 12 ~l~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~------~~~~~V~I~G~~e~v~~A~~~I~~i~~e 85 (95)
T 2ctm_A 12 ELEQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGA------PDPNCVTVTGLPENVEEAIDHILNLEEE 85 (95)
T ss_dssp CTTTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTC------SCTTEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred hhcccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCCC------CCCcEEEEEcCHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999999999999999999999976522 3478999999999999999999999876
No 54
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.26 E-value=7.7e-12 Score=99.23 Aligned_cols=73 Identities=16% Similarity=0.248 Sum_probs=64.7
Q ss_pred CceEEEEEEeCCceeeeecCCchHHHHHHhhcCceEEEecCCCCCCcCCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 012477 138 HQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (462)
Q Consensus 138 ~~~~~~l~ip~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~ 214 (462)
..+++.|.||..+++.|||++|++|++|+++|||+|+|+++.. + ...++.|+|+|+.+++.+|+.+|..++.+
T Consensus 15 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~-~---~~~~~~V~I~G~~e~v~~A~~~I~~iv~e 87 (97)
T 2ctl_A 15 RSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDD-G---NQPQDQITITGYEKNTEAARDAILRIVGE 87 (97)
T ss_dssp TTCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTT-C---SSCSSEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred cceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCC-C---CCCccEEEEEeCHHHHHHHHHHHHHHHHH
Confidence 3568999999999999999999999999999999999987532 2 24689999999999999999999998865
No 55
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.25 E-value=5.5e-12 Score=99.61 Aligned_cols=73 Identities=22% Similarity=0.372 Sum_probs=65.3
Q ss_pred CCCceEEEEEEeCCceeeeecCCchHHHHHHhhcCceEEEecCCCCCCcCCCCCceEEEEcCHHHHHHHHHHHHHHHhcC
Q 012477 136 GGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHDN 215 (462)
Q Consensus 136 ~~~~~~~~l~ip~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~~ 215 (462)
....++..|.||...++.|||++|.+|++|+++|||+|+|++.+ ..++.|+|+|+++++.+|..+|.+++.+.
T Consensus 13 l~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~-------~~~~~V~I~G~~e~v~~A~~~I~~i~~~~ 85 (94)
T 2cte_A 13 LQTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD-------DPSNQIKITGTKEGIEKARHEVLLISAEQ 85 (94)
T ss_dssp CCSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTT-------SSCCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred hCCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCC-------CCCCeEEEEECHHHHHHHHHHHHHHhhcc
Confidence 34678999999999999999999999999999999999997642 23679999999999999999999999774
No 56
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.23 E-value=9.2e-12 Score=98.08 Aligned_cols=72 Identities=17% Similarity=0.190 Sum_probs=63.9
Q ss_pred cceEEEEEecCCccceeecCCCchHHHHHHhh-CceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhhh
Q 012477 368 ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLT-KANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANL 446 (462)
Q Consensus 368 ~~~t~~i~Vp~~~~g~IIGk~G~~I~~I~~~s-ga~I~i~~~~~~P~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~~~ 446 (462)
..++.+|.||.++|+.|||++|.+|++|+++| ||+|+|++. ++..+.|+|+|+.+++++|+.+|.+.+++..
T Consensus 15 ~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~-------g~~~~~V~I~G~~~~v~~A~~~I~~iv~e~e 87 (95)
T 2ctj_A 15 NIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVE-------GSGSDTVVIRGPSSDVEKAKKQLLHLAEEKQ 87 (95)
T ss_dssp SSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCT-------TTTCCEEEEESCHHHHHHHHHHHHHHHHHHS
T ss_pred hcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCC-------CCCcceEEEEcCHHHHHHHHHHHHHHHhhhh
Confidence 46889999999999999999999999999999 999999542 3455699999999999999999999887654
No 57
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.19 E-value=4.2e-11 Score=95.70 Aligned_cols=70 Identities=14% Similarity=0.200 Sum_probs=61.3
Q ss_pred ceEEEEEecCCccceeecCCCchHHHHHHh-hCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhhhc
Q 012477 369 SFTTRLLVPTSRIGCLIGKGGSIITEMRRL-TKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANLF 447 (462)
Q Consensus 369 ~~t~~i~Vp~~~~g~IIGk~G~~I~~I~~~-sga~I~i~~~~~~P~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~~~~ 447 (462)
.++.+|.||.++|++|||++|++|++|+++ ++++|++++ +++.|+|+|+++.|++|+.+|...+++..-
T Consensus 26 ~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~----------~~~~ItI~G~~~~V~~a~~~I~~~v~el~~ 95 (102)
T 2ctf_A 26 FTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE----------GEDKITLEGPTEDVSVAQEQIEGMVKDLIN 95 (102)
T ss_dssp CEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS----------SSCEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC----------CCCEEEEECCHHHHHHHHHHHHHHHHHHHh
Confidence 478999999999999999999999999997 599998842 346899999999999999999988876644
Q ss_pred c
Q 012477 448 D 448 (462)
Q Consensus 448 ~ 448 (462)
.
T Consensus 96 ~ 96 (102)
T 2ctf_A 96 R 96 (102)
T ss_dssp H
T ss_pred h
Confidence 3
No 58
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.15 E-value=2.9e-11 Score=97.07 Aligned_cols=70 Identities=24% Similarity=0.369 Sum_probs=63.0
Q ss_pred CceEEEEEEeCCceeeeecCCchHHHHHHhhcCceEEEecCCCCCCcCCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 012477 138 HQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (462)
Q Consensus 138 ~~~~~~l~ip~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~ 214 (462)
.+....|.||..+++.|||++|++|++|+++|||+|+|+++. ...+.|+|+|+.+++.+|+.+|..++.+
T Consensus 15 ap~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g-------~~~~~V~I~G~~e~v~~A~~~I~~i~~e 84 (104)
T 2ctk_A 15 VPVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPE-------LQSDIIAITGLAANLDRAKAGLLERVKE 84 (104)
T ss_dssp SCEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTT-------TTCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCC-------CCcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 357899999999999999999999999999999999997652 2356999999999999999999999876
No 59
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.09 E-value=7.3e-11 Score=92.92 Aligned_cols=73 Identities=23% Similarity=0.343 Sum_probs=65.9
Q ss_pred CCCCceEEEEEEeCCceeeeecCCchHHHHHHhhc-CceEEEecCCCCCCcCCCCCceEEEEcCHHHHHHHHHHHHHHHh
Q 012477 135 DGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSET-GAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLH 213 (462)
Q Consensus 135 ~~~~~~~~~l~ip~~~~g~IIGk~G~~Ik~I~~~t-ga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~ 213 (462)
...+.++..|.||..+++.|||++|.+|++|+++| ||+|+|+.+ ++..+.|+|.|+.++|.+|+.+|.+++.
T Consensus 12 e~~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~-------g~~~~~V~I~G~~~~v~~A~~~I~~iv~ 84 (95)
T 2ctj_A 12 DLANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVE-------GSGSDTVVIRGPSSDVEKAKKQLLHLAE 84 (95)
T ss_dssp CCCSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCT-------TTTCCEEEEESCHHHHHHHHHHHHHHHH
T ss_pred HHhhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCC-------CCCcceEEEEcCHHHHHHHHHHHHHHHh
Confidence 45677899999999999999999999999999999 999999764 2457799999999999999999999997
Q ss_pred c
Q 012477 214 D 214 (462)
Q Consensus 214 ~ 214 (462)
+
T Consensus 85 e 85 (95)
T 2ctj_A 85 E 85 (95)
T ss_dssp H
T ss_pred h
Confidence 6
No 60
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.07 E-value=1.8e-10 Score=91.93 Aligned_cols=65 Identities=23% Similarity=0.318 Sum_probs=59.8
Q ss_pred eEEEEEEeCCceeeeecCCchHHHHHHhhc-CceEEEecCCCCCCcCCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 012477 140 VTAKLLVPSDQIGCVIGKGGQIVQNIRSET-GAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (462)
Q Consensus 140 ~~~~l~ip~~~~g~IIGk~G~~Ik~I~~~t-ga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~ 214 (462)
++..|.||..+|++|||++|++|++|++++ +++|+|+.. ++.|+|+|+++.|.+|..+|..++.+
T Consensus 27 ~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~~----------~~~ItI~G~~~~V~~a~~~I~~~v~e 92 (102)
T 2ctf_A 27 TVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTEG----------EDKITLEGPTEDVSVAQEQIEGMVKD 92 (102)
T ss_dssp EEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECSS----------SCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCCC----------CCEEEEECCHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999974 899998652 56899999999999999999998876
No 61
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.96 E-value=4.4e-10 Score=86.71 Aligned_cols=64 Identities=25% Similarity=0.308 Sum_probs=57.2
Q ss_pred cceEEEEEecCCccceeecCCCchHHHHHHhhCce-EEEecCCCCCCCCCCCCceEEEEc-CHHHHHHHHHHHHHH
Q 012477 368 ISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKAN-IRILPKENLPKIASEDDEMVQISG-DLDLAKDALIQVMTR 441 (462)
Q Consensus 368 ~~~t~~i~Vp~~~~g~IIGk~G~~I~~I~~~sga~-I~i~~~~~~P~~~~~~~~~v~I~G-~~~~v~~A~~~I~~~ 441 (462)
..+..++.||.+++|.|||++|.+|++|+++|||. |.|.+ ++.+|+|.| +.+++++|+.+|...
T Consensus 13 ~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e----------ddG~V~I~g~~~ea~~~A~~~I~~i 78 (91)
T 2cpq_A 13 AAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE----------DTGTFRIYGESADAVKKARGFLEFV 78 (91)
T ss_dssp CSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET----------TTTEEEEEESSHHHHHHHHHHHSCC
T ss_pred CceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc----------CCCEEEEEECCHHHHHHHHHHHHhh
Confidence 46889999999999999999999999999999998 99942 347999999 899999999998663
No 62
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.71 E-value=1.5e-08 Score=78.19 Aligned_cols=66 Identities=27% Similarity=0.335 Sum_probs=57.9
Q ss_pred CCCceEEEEEEeCCceeeeecCCchHHHHHHhhcCce-EEEecCCCCCCcCCCCCceEEEEc-CHHHHHHHHHHHHHH
Q 012477 136 GGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQ-IRILKDEHLPSCALRSDELVQISG-EASVVKKALCQIASR 211 (462)
Q Consensus 136 ~~~~~~~~l~ip~~~~g~IIGk~G~~Ik~I~~~tga~-I~i~~~~~~p~~~~~~~r~v~I~G-~~~~v~~A~~~I~~~ 211 (462)
....+...|.||.+.++.|||++|.+|++|+++|||+ |.+..+ +..|+|.| +.+++.+|+.+|..+
T Consensus 11 ~~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~ed----------dG~V~I~g~~~ea~~~A~~~I~~i 78 (91)
T 2cpq_A 11 LAAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDED----------TGTFRIYGESADAVKKARGFLEFV 78 (91)
T ss_dssp SSCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEETT----------TTEEEEEESSHHHHHHHHHHHSCC
T ss_pred ccCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEcC----------CCEEEEEECCHHHHHHHHHHHHhh
Confidence 4466889999999999999999999999999999998 999532 57999999 799999999888543
No 63
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.61 E-value=8.8e-08 Score=79.75 Aligned_cols=76 Identities=18% Similarity=0.361 Sum_probs=61.1
Q ss_pred ceEEEEEecCC------ccceeecCCCchHHHHHHhhCceEEEecCCCCCC-----------CCCCCCceEEEEc-CHHH
Q 012477 369 SFTTRLLVPTS------RIGCLIGKGGSIITEMRRLTKANIRILPKENLPK-----------IASEDDEMVQISG-DLDL 430 (462)
Q Consensus 369 ~~t~~i~Vp~~------~~g~IIGk~G~~I~~I~~~sga~I~i~~~~~~P~-----------~~~~~~~~v~I~G-~~~~ 430 (462)
.++.+|.||.+ ++|.|||++|.+||+|+++|||+|.|..+..... ....++-.|.|++ +.+.
T Consensus 6 k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e~ 85 (131)
T 1k1g_A 6 RVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMEN 85 (131)
T ss_dssp CEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHHH
T ss_pred eEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHHH
Confidence 47889999987 8899999999999999999999999976432110 0112356789999 5799
Q ss_pred HHHHHHHHHHHHHh
Q 012477 431 AKDALIQVMTRLRA 444 (462)
Q Consensus 431 v~~A~~~I~~~l~~ 444 (462)
+++|+.+|...|..
T Consensus 86 ~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 86 VKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998865
No 64
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.57 E-value=1.9e-07 Score=76.13 Aligned_cols=78 Identities=15% Similarity=0.019 Sum_probs=58.5
Q ss_pred cceEEEEEecCC-------ccceeecCCCchHHHHHHhhCceEEEecCCCC----CCC-CCCCCceEEEEc-CHHHHHHH
Q 012477 368 ISFTTRLLVPTS-------RIGCLIGKGGSIITEMRRLTKANIRILPKENL----PKI-ASEDDEMVQISG-DLDLAKDA 434 (462)
Q Consensus 368 ~~~t~~i~Vp~~-------~~g~IIGk~G~~I~~I~~~sga~I~i~~~~~~----P~~-~~~~~~~v~I~G-~~~~v~~A 434 (462)
..++.+|.||-+ ++|.|||++|.+||+|+++|||+|.|..+... ... ...++-.|.|++ +++++++|
T Consensus 10 ~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A 89 (119)
T 2yqr_A 10 HYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAA 89 (119)
T ss_dssp SCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHH
T ss_pred eEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHH
Confidence 457788888865 67999999999999999999999999643210 000 112334677876 58999999
Q ss_pred HHHHHHHHHhh
Q 012477 435 LIQVMTRLRAN 445 (462)
Q Consensus 435 ~~~I~~~l~~~ 445 (462)
+.+|.+.|...
T Consensus 90 ~~~Ie~Ll~~v 100 (119)
T 2yqr_A 90 KKLCENLLQTV 100 (119)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhch
Confidence 99999887653
No 65
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.47 E-value=4.5e-07 Score=75.45 Aligned_cols=77 Identities=27% Similarity=0.374 Sum_probs=61.8
Q ss_pred CceEEEEEEeCC------ceeeeecCCchHHHHHHhhcCceEEEecCCCCCC-----------cCCCCCceEEEEc-CHH
Q 012477 138 HQVTAKLLVPSD------QIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPS-----------CALRSDELVQISG-EAS 199 (462)
Q Consensus 138 ~~~~~~l~ip~~------~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~-----------~~~~~~r~v~I~G-~~~ 199 (462)
..++.+|.||.+ ++|.|||++|.+||+|+++|||+|.|........ .....+-.|.|++ +.+
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e 84 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTME 84 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHH
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHH
Confidence 357889999988 7889999999999999999999999976421110 0012366888999 589
Q ss_pred HHHHHHHHHHHHHhc
Q 012477 200 VVKKALCQIASRLHD 214 (462)
Q Consensus 200 ~v~~A~~~I~~~l~~ 214 (462)
.+.+|+.+|..+|..
T Consensus 85 ~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 85 NVKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999976
No 66
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.43 E-value=3.4e-07 Score=74.59 Aligned_cols=77 Identities=25% Similarity=0.202 Sum_probs=58.3
Q ss_pred CceEEEEEEeCC-------ceeeeecCCchHHHHHHhhcCceEEEecCCCC---C--CcCCCCCceEEEEc-CHHHHHHH
Q 012477 138 HQVTAKLLVPSD-------QIGCVIGKGGQIVQNIRSETGAQIRILKDEHL---P--SCALRSDELVQISG-EASVVKKA 204 (462)
Q Consensus 138 ~~~~~~l~ip~~-------~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~---p--~~~~~~~r~v~I~G-~~~~v~~A 204 (462)
..++.+|.||.+ +++.|||++|.+||+|+++|||+|.|..+... + ......+-.|.|.+ +.+++.+|
T Consensus 10 ~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A 89 (119)
T 2yqr_A 10 HYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAA 89 (119)
T ss_dssp SCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHH
T ss_pred eEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHH
Confidence 356778888875 67999999999999999999999999643110 0 00011344677876 59999999
Q ss_pred HHHHHHHHhc
Q 012477 205 LCQIASRLHD 214 (462)
Q Consensus 205 ~~~I~~~l~~ 214 (462)
+.+|.+++..
T Consensus 90 ~~~Ie~Ll~~ 99 (119)
T 2yqr_A 90 KKLCENLLQT 99 (119)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhc
Confidence 9999999975
No 67
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.13 E-value=2.5e-06 Score=71.26 Aligned_cols=76 Identities=26% Similarity=0.399 Sum_probs=56.5
Q ss_pred eEEEEEEeCCc------eeeeecCCchHHHHHHhhcCceEEEecCCCCC------------Cc-CCCCCceEEEEcC-H-
Q 012477 140 VTAKLLVPSDQ------IGCVIGKGGQIVQNIRSETGAQIRILKDEHLP------------SC-ALRSDELVQISGE-A- 198 (462)
Q Consensus 140 ~~~~l~ip~~~------~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p------------~~-~~~~~r~v~I~G~-~- 198 (462)
++.++.||.+. +|.|||++|.++|+|+++|||+|.|-.+...- .. ....+--|.|++. .
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 46788888655 89999999999999999999999998653210 00 0112237889985 3
Q ss_pred ----HHHHHHHHHHHHHHhcC
Q 012477 199 ----SVVKKALCQIASRLHDN 215 (462)
Q Consensus 199 ----~~v~~A~~~I~~~l~~~ 215 (462)
..+.+|+.+|..+|...
T Consensus 82 ~~~~~~l~~A~~~I~~lL~p~ 102 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLVPA 102 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSSCC
T ss_pred hhHHHHHHHHHHHHHHHCCCC
Confidence 27999999999998754
No 68
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.10 E-value=2.5e-06 Score=71.28 Aligned_cols=74 Identities=22% Similarity=0.276 Sum_probs=54.2
Q ss_pred eEEEEEecC------CccceeecCCCchHHHHHHhhCceEEEecCCCCC------------CC-CCCCCceEEEEcC-HH
Q 012477 370 FTTRLLVPT------SRIGCLIGKGGSIITEMRRLTKANIRILPKENLP------------KI-ASEDDEMVQISGD-LD 429 (462)
Q Consensus 370 ~t~~i~Vp~------~~~g~IIGk~G~~I~~I~~~sga~I~i~~~~~~P------------~~-~~~~~~~v~I~G~-~~ 429 (462)
++.+|.||- +++|.|||++|+++|+|+++|||+|.|-.+...- .. ...+.=-|.|++. ++
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 467788884 4589999999999999999999999997653210 00 0111226889984 43
Q ss_pred -----HHHHHHHHHHHHHH
Q 012477 430 -----LAKDALIQVMTRLR 443 (462)
Q Consensus 430 -----~v~~A~~~I~~~l~ 443 (462)
.++.|+.+|...|.
T Consensus 82 ~~~~~~l~~A~~~I~~lL~ 100 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLV 100 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSS
T ss_pred hhHHHHHHHHHHHHHHHCC
Confidence 79999999988765
No 69
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=98.03 E-value=3.3e-06 Score=88.40 Aligned_cols=93 Identities=17% Similarity=0.199 Sum_probs=71.7
Q ss_pred CCHHHHHHHHHHHHHHHhhccCCCCCCCCCceEEEEEEeCCceeeeecCCchHHHHHHhhcCceEEEecCCCCCCcCCCC
Q 012477 109 VSPAQDALFKVHDRVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRS 188 (462)
Q Consensus 109 v~~a~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~ip~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~ 188 (462)
+..|.++..++++.+.+.............+....+.||.+.++.|||++|.+||.|+++|||+|.|..
T Consensus 536 L~~A~~g~~~I~~~m~~al~~~~~~~~~~ap~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d----------- 604 (630)
T 3u1k_A 536 IQQASVAKKEILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVD----------- 604 (630)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSCCSSCCTTCCEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECS-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEcC-----------
Confidence 456777777777766543333333334455678899999999999999999999999999999999842
Q ss_pred CceEEEEcC-HHHHHHHHHHHHHHH
Q 012477 189 DELVQISGE-ASVVKKALCQIASRL 212 (462)
Q Consensus 189 ~r~v~I~G~-~~~v~~A~~~I~~~l 212 (462)
+..|.|.|+ .+++.+|+.+|..++
T Consensus 605 ~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 605 EETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp SSEEEEEESSHHHHHHHHHHTTC--
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 568999997 688999999887654
No 70
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.94 E-value=1.9e-05 Score=64.49 Aligned_cols=68 Identities=18% Similarity=0.179 Sum_probs=59.8
Q ss_pred EEEEecCCccceeecCCCchHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhh
Q 012477 372 TRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRAN 445 (462)
Q Consensus 372 ~~i~Vp~~~~g~IIGk~G~~I~~I~~~sga~I~i~~~~~~P~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~~ 445 (462)
..+.|....++.|+|++|+.|+.|+..|++.|+|..-+ .++...|+|.|++..-..|+.+|....+-+
T Consensus 58 lVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~------s~g~tEVtIfG~~~~Q~rak~MI~sLA~~h 125 (140)
T 3v69_A 58 KRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWG------PERRAEIWIFGPPPFRRDVDRMLTDLAHYC 125 (140)
T ss_dssp EEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCC------TTSCEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccC------CCCcEEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999999999999999999997542 245678999999999999999998876655
No 71
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.69 E-value=1.2e-05 Score=84.11 Aligned_cols=63 Identities=17% Similarity=0.231 Sum_probs=53.9
Q ss_pred ceEEEEEecCCccceeecCCCchHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcC-HHHHHHHHHHHHHHH
Q 012477 369 SFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGD-LDLAKDALIQVMTRL 442 (462)
Q Consensus 369 ~~t~~i~Vp~~~~g~IIGk~G~~I~~I~~~sga~I~i~~~~~~P~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~l 442 (462)
.....+.||.+.+|.|||+||++||.|+++|||+|.|. ++..|.|.|+ .+.+++|+.+|.+.+
T Consensus 566 p~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~-----------d~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 566 PVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQV-----------DEETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp CEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEEC-----------SSSEEEEEESSHHHHHHHHHHTTC--
T ss_pred CeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEc-----------CCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 35678999999999999999999999999999999994 2368999997 688999999886543
No 72
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=97.64 E-value=2.5e-05 Score=65.71 Aligned_cols=104 Identities=21% Similarity=0.269 Sum_probs=74.5
Q ss_pred eEEEEeeeCCccccccccCChhHHhHHhhhCCeEEecCCCCCCCceEEEEecCCcccccccHHHHHHHhhcCcccccccc
Q 012477 284 FSLRLVCPVANIGGVIGKGGAIINQIRQESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEKIER 363 (462)
Q Consensus 284 ~~~~v~ip~~~~g~IIGk~G~~Ik~I~~~sga~I~i~~~~~~~~~~~i~i~G~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 363 (462)
-.+.+.|+...+|..||++|++|+.|+++.|-+|.+-.-+++. ..-+..+ +.|.-.....-
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~s~d~-----------------~~fI~na--LsPA~V~~V~i 96 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEYSSDL-----------------ERIVKNL--FPGVKIESINV 96 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEECCSSH-----------------HHHHHHH--STTSCEEEEEE
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEcCCCH-----------------HHHHHHh--cCCceEEEEEE
Confidence 3788999999999999999999999999999999877643321 0011111 11211111110
Q ss_pred cCCCcceEEEEEecCCccceeecCCCchHHHHHHhhCceEEEe
Q 012477 364 DSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRIL 406 (462)
Q Consensus 364 ~~~~~~~t~~i~Vp~~~~g~IIGk~G~~I~~I~~~sga~I~i~ 406 (462)
..........+.||.+..+..|||+|++++-..+.||.+|.|.
T Consensus 97 ~~~~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 97 RERNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp EEETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred eecCCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 0001246778999999999999999999999999999998873
No 73
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.46 E-value=3.8e-05 Score=81.27 Aligned_cols=96 Identities=23% Similarity=0.326 Sum_probs=28.9
Q ss_pred cCCHHHHHHHHHHHHHHHhhccCCCCCCCCCceEEEEEEeCCceeeeecCCchHHHHHHhhcCceEEEecCCCCCCcCCC
Q 012477 108 FVSPAQDALFKVHDRVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALR 187 (462)
Q Consensus 108 ~v~~a~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~ip~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~ 187 (462)
.+..|.++..+|++.+.+.............+....+.||.+.++.|||++|.+||.|.++||++|.+..
T Consensus 538 aL~~A~~g~~~I~~~m~~al~~~r~~~~~~ap~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~d---------- 607 (726)
T 4aid_A 538 ALAQAKEGRAHILGEMNKAMDAPRADVGDFAPKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIND---------- 607 (726)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCCSSCCSSCCC-----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEEC----------
Confidence 3556777777777765443322223333344567889999999999999999999999999999999843
Q ss_pred CCceEEEEcC-HHHHHHHHHHHHHHHhc
Q 012477 188 SDELVQISGE-ASVVKKALCQIASRLHD 214 (462)
Q Consensus 188 ~~r~v~I~G~-~~~v~~A~~~I~~~l~~ 214 (462)
+..|.|.+. .+++.+|+.+|..++.+
T Consensus 608 -dG~v~I~~~~~~~~~~A~~~i~~i~~~ 634 (726)
T 4aid_A 608 -DGVVKVSASDGAKIKAAIDWIKSITDE 634 (726)
T ss_dssp -------CCSCHHHHHHHHHC-------
T ss_pred -CceEEEEeCCHHHHHHHHHHHHHHhhh
Confidence 456788775 88999999999888764
No 74
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=97.44 E-value=5.1e-05 Score=63.76 Aligned_cols=104 Identities=22% Similarity=0.282 Sum_probs=71.0
Q ss_pred eEEEEEeeCCccceeecCCchHHHHHHHHhCCeEEEcCCCCCCCceEEEEEcCCcccccccCCCCcCCHHHHHHHHHHHH
Q 012477 43 TVYRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDR 122 (462)
Q Consensus 43 ~~~~ilvp~~~~g~IIGk~G~~Ik~i~~~tg~~I~v~~~~~~~~ervi~I~G~~e~~~~~~~~~~~v~~a~~a~~~i~~~ 122 (462)
=.+.++|+...+|+.||++|++|+.|.++.|-+|+|-+- +..++. -+. +.
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~-----------s~d~~~----------------fI~---na 85 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEY-----------SSDLER----------------IVK---NL 85 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEEC-----------CSSHHH----------------HHH---HH
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEc-----------CCCHHH----------------HHH---Hh
Confidence 456789999999999999999999999999999986321 111111 000 00
Q ss_pred HHHhhccCCCCCCCCCceEEEEEEeCCceeeeecCCchHHHHHHhhcCceEEEe
Q 012477 123 VIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRIL 176 (462)
Q Consensus 123 i~~~~~~~~~~~~~~~~~~~~l~ip~~~~g~IIGk~G~~Ik~I~~~tga~I~i~ 176 (462)
+.--.+.+..-...+......+.||....+..|||+|.+++-...-||.+|.|.
T Consensus 86 LsPA~V~~V~i~~~~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 86 FPGVKIESINVRERNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp STTSCEEEEEEEEETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred cCCceEEEEEEeecCCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 000000000000002345788999999999999999999999999999988774
No 75
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.35 E-value=0.00038 Score=56.85 Aligned_cols=68 Identities=15% Similarity=0.151 Sum_probs=60.3
Q ss_pred EEEEEEeCCceeeeecCCchHHHHHHhhcCceEEEecCCCCCCcCCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 012477 141 TAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (462)
Q Consensus 141 ~~~l~ip~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~ 214 (462)
.+.+.+...+++.|+|++|+.|+.|+..|++.|++..-+. +..-.|+|.|++..=..|..+|..+..-
T Consensus 57 PlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s------~g~tEVtIfG~~~~Q~rak~MI~sLA~~ 124 (140)
T 3v69_A 57 PKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGP------ERRAEIWIFGPPPFRRDVDRMLTDLAHY 124 (140)
T ss_dssp CEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCCT------TSCEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccCC------CCcEEEEEECCHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999976522 4577899999999999999999887754
No 76
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=96.84 E-value=0.00022 Score=75.50 Aligned_cols=65 Identities=28% Similarity=0.358 Sum_probs=11.7
Q ss_pred eEEEEEecCCccceeecCCCchHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcC-HHHHHHHHHHHHHHHHhh
Q 012477 370 FTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGD-LDLAKDALIQVMTRLRAN 445 (462)
Q Consensus 370 ~t~~i~Vp~~~~g~IIGk~G~~I~~I~~~sga~I~i~~~~~~P~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~l~~~ 445 (462)
....+.||.+.++.|||+||.+||.|.++||++|.|. ++..|.|.+. .+++++|+.+|...+.+.
T Consensus 570 ~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~-----------ddG~v~I~~~~~~~~~~A~~~i~~i~~~~ 635 (726)
T 4aid_A 570 KIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIN-----------DDGVVKVSASDGAKIKAAIDWIKSITDEA 635 (726)
T ss_dssp C------------------------------------------------------CCSCHHHHHHHHHC--------
T ss_pred eEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEE-----------CCceEEEEeCCHHHHHHHHHHHHHHhhhh
Confidence 4567899999999999999999999999999999983 2346788776 788999999988776544
No 77
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=96.16 E-value=0.004 Score=56.88 Aligned_cols=97 Identities=23% Similarity=0.294 Sum_probs=65.3
Q ss_pred CccccccccCChhHHhH-HhhhCCeEEecCCCCCCCceEEEEecCCcccccccHHHHHHHhhcCccccccc-ccCCCcce
Q 012477 293 ANIGGVIGKGGAIINQI-RQESGAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEKIE-RDSGLISF 370 (462)
Q Consensus 293 ~~~g~IIGk~G~~Ik~I-~~~sga~I~i~~~~~~~~~~~i~i~G~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 370 (462)
+-+|.-||++|++|+.| ++..|=+|.|-.-+++. ..-+..+ +.|.-..... .+. ...
T Consensus 126 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~dp-----------------~~fi~na--lsPA~V~~V~i~~~--~~~ 184 (251)
T 2asb_A 126 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDDP-----------------ARFVANA--LSPAKVVSVSVIDQ--TAR 184 (251)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCSSH-----------------HHHHHHH--TTTSCCSEEEEEET--TTT
T ss_pred CHHHHHhCCCchHHHHHHHHhCCCeEEEEEecCCH-----------------HHHHHhc--cCCcceEEEEEEcC--CCc
Confidence 35799999999999999 55568788776643221 0011111 1121111111 011 124
Q ss_pred EEEEEecCCccceeecCCCchHHHHHHhhCceEEEecCCC
Q 012477 371 TTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKEN 410 (462)
Q Consensus 371 t~~i~Vp~~~~g~IIGk~G~~I~~I~~~sga~I~i~~~~~ 410 (462)
...+.||.+..+.-|||+|++++--.+.||.+|.|....+
T Consensus 185 ~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~~ 224 (251)
T 2asb_A 185 AARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDAP 224 (251)
T ss_dssp EEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEESSC
T ss_pred EEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEHHH
Confidence 6889999999999999999999999999999999976543
No 78
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=95.86 E-value=0.0062 Score=55.64 Aligned_cols=98 Identities=23% Similarity=0.223 Sum_probs=63.5
Q ss_pred CccceeecCCchHHHHH-HHHhCCeEEEcCCCCCCCceEEEEEcCCcccccccCCCCcCCHHHHHHHHHHHHHHHhhccC
Q 012477 52 RKIGSIIGRGGEIVKQL-RIDTKSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVIAEELRG 130 (462)
Q Consensus 52 ~~~g~IIGk~G~~Ik~i-~~~tg~~I~v~~~~~~~~ervi~I~G~~e~~~~~~~~~~~v~~a~~a~~~i~~~i~~~~~~~ 130 (462)
+-+|+-||++|++|+.| ++-.|=+|+|-+- +-.++. .+.+.+.-..+..
T Consensus 126 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~-----------s~dp~~-------------------fi~nalsPA~V~~ 175 (251)
T 2asb_A 126 NAKGACIGPMGQRVRNVMSELSGEKIDIIDY-----------DDDPAR-------------------FVANALSPAKVVS 175 (251)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEEC-----------CSSHHH-------------------HHHHHTTTSCCSE
T ss_pred CHHHHHhCCCchHHHHHHHHhCCCeEEEEEe-----------cCCHHH-------------------HHHhccCCcceEE
Confidence 45899999999999999 5667888876321 111111 0111110000000
Q ss_pred CCCCCCCCceEEEEEEeCCceeeeecCCchHHHHHHhhcCceEEEecCCC
Q 012477 131 DEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEH 180 (462)
Q Consensus 131 ~~~~~~~~~~~~~l~ip~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~ 180 (462)
.. ......-...+.||....+..|||+|.+++-....||.+|.|...++
T Consensus 176 V~-i~~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~~ 224 (251)
T 2asb_A 176 VS-VIDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDAP 224 (251)
T ss_dssp EE-EEETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEESSC
T ss_pred EE-EEcCCCcEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEHHH
Confidence 00 00011236889999999999999999999999999999999977643
No 79
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=95.81 E-value=0.0072 Score=58.44 Aligned_cols=103 Identities=21% Similarity=0.274 Sum_probs=69.9
Q ss_pred EEEEeeeC-----CccccccccCChhHHhHHhhh-CCeEEecCCCCCCCceEEEEecCCcccccccHHHHHHHhhcCccc
Q 012477 285 SLRLVCPV-----ANIGGVIGKGGAIINQIRQES-GAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCS 358 (462)
Q Consensus 285 ~~~v~ip~-----~~~g~IIGk~G~~Ik~I~~~s-ga~I~i~~~~~~~~~~~i~i~G~~~~~~~~~~~~~a~~~~~~~~~ 358 (462)
..++.|-. +-+|..||++|++|+.|.++. |=+|.|-.-+++. ..-+..+ +.|.-.
T Consensus 236 RaKIAV~s~d~~iDpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~dp-----------------~~fi~na--lsPA~V 296 (366)
T 1k0r_A 236 RSKIAVRSNVAGLNAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDDP-----------------ARFVANA--LSPAKV 296 (366)
T ss_dssp EEEEEEEESSTTCCHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCSSH-----------------HHHHHHH--TTTSCC
T ss_pred eEEEEEEeCCCCCCCcccccCCcchHHHHHHHHhCCCeEEEEEcCCCH-----------------HHHHHHh--cCCcce
Confidence 44555543 457999999999999999999 7777776633221 0011111 112111
Q ss_pred ccc-cccCCCcceEEEEEecCCccceeecCCCchHHHHHHhhCceEEEecC
Q 012477 359 EKI-ERDSGLISFTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPK 408 (462)
Q Consensus 359 ~~~-~~~~~~~~~t~~i~Vp~~~~g~IIGk~G~~I~~I~~~sga~I~i~~~ 408 (462)
... ..+. ......+.||....+..|||+|++++-..+.||.+|.|...
T Consensus 297 ~~V~~~~~--~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 345 (366)
T 1k0r_A 297 VSVSVIDQ--TARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 345 (366)
T ss_dssp SEEEEEET--TTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEES
T ss_pred eEEEEEcC--CCcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEH
Confidence 111 0011 13578899999999999999999999999999999999654
No 80
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=95.60 E-value=0.016 Score=56.03 Aligned_cols=98 Identities=23% Similarity=0.234 Sum_probs=65.0
Q ss_pred CccceeecCCchHHHHHHHHh-CCeEEEcCCCCCCCceEEEEEcCCcccccccCCCCcCCHHHHHHHHHHHHHHHhhccC
Q 012477 52 RKIGSIIGRGGEIVKQLRIDT-KSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVIAEELRG 130 (462)
Q Consensus 52 ~~~g~IIGk~G~~Ik~i~~~t-g~~I~v~~~~~~~~ervi~I~G~~e~~~~~~~~~~~v~~a~~a~~~i~~~i~~~~~~~ 130 (462)
+-+|+.||++|++|+.|.++. |=+|+|-+- +-.++. .+.+.+.--.+..
T Consensus 249 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~-----------s~dp~~-------------------fi~nalsPA~V~~ 298 (366)
T 1k0r_A 249 NAKGACIGPMGQRVRNVMSELSGEKIDIIDY-----------DDDPAR-------------------FVANALSPAKVVS 298 (366)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEEC-----------CSSHHH-------------------HHHHHTTTSCCSE
T ss_pred CCcccccCCcchHHHHHHHHhCCCeEEEEEc-----------CCCHHH-------------------HHHHhcCCcceeE
Confidence 568999999999999999998 888876321 101110 0111110000000
Q ss_pred CCCCCCCCceEEEEEEeCCceeeeecCCchHHHHHHhhcCceEEEecCCC
Q 012477 131 DEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEH 180 (462)
Q Consensus 131 ~~~~~~~~~~~~~l~ip~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~ 180 (462)
.. ..........+.||....+..|||+|.+++-...-||.+|.|...++
T Consensus 299 V~-~~~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~~ 347 (366)
T 1k0r_A 299 VS-VIDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDAP 347 (366)
T ss_dssp EE-EEETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEESSC
T ss_pred EE-EEcCCCcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEHHH
Confidence 00 00011347889999999999999999999999999999999977643
No 81
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=95.56 E-value=0.0028 Score=67.41 Aligned_cols=95 Identities=23% Similarity=0.277 Sum_probs=12.0
Q ss_pred cCCHHHHHHHHHHHHHHHhhccCCCCCCCCCceEEEEEEeCCceeeeecCCchHHHHHHhhcCceEEEecCCCCCCcCCC
Q 012477 108 FVSPAQDALFKVHDRVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALR 187 (462)
Q Consensus 108 ~v~~a~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~ip~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~ 187 (462)
.+..|.++..++++.+.+.............+....+.||...++.+||++|.+|+.|.++||+.|.+..
T Consensus 528 ~l~~A~~~~~~I~~~m~~al~~~~~~~~~~ap~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~---------- 597 (723)
T 3cdi_A 528 ALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED---------- 597 (723)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcchhccccCceEEEEEECHHHhcccccccceeeeeeehhhCceEEecC----------
Confidence 3455667777777765443222222223334566788999999999999999999999999999998742
Q ss_pred CCceEEEEcC-HHHHHHHHHHHHHHHh
Q 012477 188 SDELVQISGE-ASVVKKALCQIASRLH 213 (462)
Q Consensus 188 ~~r~v~I~G~-~~~v~~A~~~I~~~l~ 213 (462)
+..+.|.+. .+.+.+|..+|..++.
T Consensus 598 -dg~v~I~~~~~~~~~~a~~~i~~i~~ 623 (723)
T 3cdi_A 598 -DGTVKIAATDGEKAKHAIRRIEEITA 623 (723)
T ss_dssp ---------------------------
T ss_pred -CccEEEecCCHHHHHHHHHHHHHHhh
Confidence 456777664 6677778777766553
No 82
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=94.73 E-value=0.0027 Score=67.76 Aligned_cols=93 Identities=24% Similarity=0.333 Sum_probs=36.9
Q ss_pred cCCHHHHHHHHHHHHHHHhhccCCCCCCCCCceEEEEEEeCCceeeeecCCchHHHHHHhhcCceEEEecCCCCCCcCCC
Q 012477 108 FVSPAQDALFKVHDRVIAEELRGDEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALR 187 (462)
Q Consensus 108 ~v~~a~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~~l~ip~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~ 187 (462)
.+..|.++..+|++.+.+..... .......+....+.||.+.++.+||++|.+||.|.++||+.|.+..
T Consensus 567 aL~~A~~~~~~I~~~m~~al~~~-~~~~~~ap~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~---------- 635 (757)
T 1e3p_A 567 ALKQARDARLHILDVMMEAIDTP-DEMSPNAPRIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED---------- 635 (757)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSC-CCCCTTSCBCCCC------------------CTTCCCCCSCC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHhccc-ccccccCceeEEEEEChHHeehcccccceeeehhhHhhCCEEEecC----------
Confidence 44567777777777654432222 2222333445678899999999999999999999999999998843
Q ss_pred CCceEEEEcC-HHHHHHHHHHHHHHH
Q 012477 188 SDELVQISGE-ASVVKKALCQIASRL 212 (462)
Q Consensus 188 ~~r~v~I~G~-~~~v~~A~~~I~~~l 212 (462)
+..|.|.+. .....+|...|..+.
T Consensus 636 -dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 636 -DGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp -----CCCBSSHHHHCC---------
T ss_pred -CceEEEecCCHHHHHHHHHHHHHhc
Confidence 445666664 677777766665544
No 83
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=94.69 E-value=0.034 Score=53.54 Aligned_cols=93 Identities=32% Similarity=0.449 Sum_probs=63.7
Q ss_pred ccccccccCChhHHhHHhhh-CCeEEecCCCCCCCceEEEEecCCcccccccHHHHHHHhhcCcccccccc-cCCCcceE
Q 012477 294 NIGGVIGKGGAIINQIRQES-GAAIKVDSSSTEGDDCLITVSSKEFFEDTLSATIEAVVRLQPRCSEKIER-DSGLISFT 371 (462)
Q Consensus 294 ~~g~IIGk~G~~Ik~I~~~s-ga~I~i~~~~~~~~~~~i~i~G~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~t 371 (462)
-+|+.||.+|.+|+.|..+. |-+|.+-.-+++. ..-+..++ .|.-.....- + .....
T Consensus 246 pvGacvg~~G~ri~~i~~el~ge~Idii~~s~d~-----------------~~fi~nal--~Pa~v~~v~~~d--~~~~~ 304 (344)
T 1hh2_P 246 PIGACIGEGGSRIAAILKELKGEKLDVLKWSDDP-----------------KQLIANAL--APATVIEVEILD--KENKA 304 (344)
T ss_dssp HHHHHHCTTSTTHHHHHHHTTTCEEEEEECCSSH-----------------HHHHHHHT--CSSCCSEEEEEE--TTTTE
T ss_pred ccceeeccCCcEeHHHHHHhCCCeeeEEecCCCH-----------------HHHHHHhc--CccEEEEEEEEc--CCCCE
Confidence 57999999999999999998 6676665533221 00111111 1211111111 1 11356
Q ss_pred EEEEecCCccceeecCCCchHHHHHHhhCceEEEec
Q 012477 372 TRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILP 407 (462)
Q Consensus 372 ~~i~Vp~~~~g~IIGk~G~~I~~I~~~sga~I~i~~ 407 (462)
..+.||....+.-|||+|++++--.+.||.+|.|..
T Consensus 305 ~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s 340 (344)
T 1hh2_P 305 ARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKP 340 (344)
T ss_dssp EEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEE
T ss_pred EEEEEChHHcchhhcCCCccHHHHHHHHCCEeceee
Confidence 889999999999999999999999999999999953
No 84
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=94.18 E-value=0.043 Score=52.83 Aligned_cols=96 Identities=23% Similarity=0.304 Sum_probs=63.0
Q ss_pred CccceeecCCchHHHHHHHHh-CCeEEEcCCCCCCCceEEEEEcCCcccccccCCCCcCCHHHHHHHHHHHHHHHhhccC
Q 012477 52 RKIGSIIGRGGEIVKQLRIDT-KSKIRIGETVPGSEERVVTVYSASDETNAFEDGDKFVSPAQDALFKVHDRVIAEELRG 130 (462)
Q Consensus 52 ~~~g~IIGk~G~~Ik~i~~~t-g~~I~v~~~~~~~~ervi~I~G~~e~~~~~~~~~~~v~~a~~a~~~i~~~i~~~~~~~ 130 (462)
+-+|+.||.+|.+|+.+.++. |=+|.|-+- +-.++. .+.+.|.--.+..
T Consensus 245 DpvGacvg~~G~ri~~i~~el~ge~Idii~~-----------s~d~~~-------------------fi~nal~Pa~v~~ 294 (344)
T 1hh2_P 245 DPIGACIGEGGSRIAAILKELKGEKLDVLKW-----------SDDPKQ-------------------LIANALAPATVIE 294 (344)
T ss_dssp CHHHHHHCTTSTTHHHHHHHTTTCEEEEEEC-----------CSSHHH-------------------HHHHHTCSSCCSE
T ss_pred cccceeeccCCcEeHHHHHHhCCCeeeEEec-----------CCCHHH-------------------HHHHhcCccEEEE
Confidence 458999999999999999998 777765221 111100 0001000000000
Q ss_pred CCCCCCCCceEEEEEEeCCceeeeecCCchHHHHHHhhcCceEEEecC
Q 012477 131 DEDSDGGHQVTAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKD 178 (462)
Q Consensus 131 ~~~~~~~~~~~~~l~ip~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~ 178 (462)
. .......-...+.||....+..|||+|.+++-....||.+|.|...
T Consensus 295 v-~~~d~~~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s~ 341 (344)
T 1hh2_P 295 V-EILDKENKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKPI 341 (344)
T ss_dssp E-EEEETTTTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEEC
T ss_pred E-EEEcCCCCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceeec
Confidence 0 0001123478899999999999999999999999999999999765
No 85
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=92.82 E-value=0.019 Score=60.97 Aligned_cols=62 Identities=29% Similarity=0.378 Sum_probs=0.0
Q ss_pred eEEEEEecCCccceeecCCCchHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcC-HHHHHHHHHHHHHHH
Q 012477 370 FTTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGD-LDLAKDALIQVMTRL 442 (462)
Q Consensus 370 ~t~~i~Vp~~~~g~IIGk~G~~I~~I~~~sga~I~i~~~~~~P~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~l 442 (462)
....+.||.+.++.|||+||.+|+.|.++||+.|.|. .+..|.|.+. .+.+++|..+|...+
T Consensus 560 ~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~-----------~dg~v~I~~~~~~~~~~a~~~i~~i~ 622 (723)
T 3cdi_A 560 RIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIE-----------DDGTVKIAATDGEKAKHAIRRIEEIT 622 (723)
T ss_dssp --------------------------------------------------------------------------
T ss_pred eEEEEEECHHHhcccccccceeeeeeehhhCceEEec-----------CCccEEEecCCHHHHHHHHHHHHHHh
Confidence 4567889999999999999999999999999999883 2356777775 467788877776544
No 86
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=90.85 E-value=0.014 Score=62.42 Aligned_cols=61 Identities=23% Similarity=0.273 Sum_probs=20.8
Q ss_pred EEEEEecCCccceeecCCCchHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcC-HHHHHHHHHHHHHHH
Q 012477 371 TTRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGD-LDLAKDALIQVMTRL 442 (462)
Q Consensus 371 t~~i~Vp~~~~g~IIGk~G~~I~~I~~~sga~I~i~~~~~~P~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~l 442 (462)
...+.||.+.+|.+||++|.+||.|.+.||+.|.|.. +..|.|+.. .+..+.|..+|....
T Consensus 599 ~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~-----------dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 599 IITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED-----------DGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp CCCC------------------CTTCCCCCSCC-------------------CCCBSSHHHHCC---------
T ss_pred eEEEEEChHHeehcccccceeeehhhHhhCCEEEecC-----------CceEEEecCCHHHHHHHHHHHHHhc
Confidence 3468899999999999999999999999999999842 356778775 566677766665543
No 87
>3ul0_C Nuclear CAP-binding protein subunit 1; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 2.00A {Mus musculus} PDB: 3ukz_C
Probab=78.62 E-value=2 Score=23.26 Aligned_cols=23 Identities=48% Similarity=0.772 Sum_probs=13.2
Q ss_pred CccCCCCCCCCCCCCCC-CCccccCC
Q 012477 6 NSYGKRSHSQTDYADHG-PNKRRYTG 30 (462)
Q Consensus 6 ~~~~~r~~~~~~~~~~~-~~~~~~~~ 30 (462)
.|+.+|.|++.. +.| ..||++.+
T Consensus 1 gsmsrrrhsden--dggq~hkrr~ts 24 (26)
T 3ul0_C 1 GSMSRRRHSDEN--DGGQPHKRRKTS 24 (26)
T ss_dssp --CCCCCCTTSC--SSCCCSCCCCCC
T ss_pred Cccccccccccc--CCCCcccccccc
Confidence 367888898443 333 56666654
No 88
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=74.15 E-value=1.3 Score=37.17 Aligned_cols=30 Identities=20% Similarity=-0.016 Sum_probs=25.6
Q ss_pred EEEEEeeCCccceeecCCchHHHHHHHHhC
Q 012477 44 VYRYLCPIRKIGSIIGRGGEIVKQLRIDTK 73 (462)
Q Consensus 44 ~~~ilvp~~~~g~IIGk~G~~Ik~i~~~tg 73 (462)
++.+-+..+..|.||||.|.+++.|+--+.
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~~ 63 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLLF 63 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHHH
Confidence 456677889999999999999999997664
No 89
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=69.22 E-value=1.7 Score=33.19 Aligned_cols=28 Identities=11% Similarity=0.242 Sum_probs=23.9
Q ss_pred EEEEEeeCCccceeecCCchHHHHHHHH
Q 012477 44 VYRYLCPIRKIGSIIGRGGEIVKQLRID 71 (462)
Q Consensus 44 ~~~ilvp~~~~g~IIGk~G~~Ik~i~~~ 71 (462)
..++.|....-|.|||++|..|++|+.+
T Consensus 36 ~i~I~I~tarPg~vIGkkG~~Ie~L~~~ 63 (92)
T 1wh9_A 36 RTEIIILATRTQNVLGEKGRRIRELTAV 63 (92)
T ss_dssp CEEEEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCcHHHHHHHHH
Confidence 4578888889999999999999888765
No 90
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=66.15 E-value=5 Score=21.97 Aligned_cols=23 Identities=39% Similarity=0.459 Sum_probs=11.2
Q ss_pred CCccCCCCCCCCCCCCCCCCcccc
Q 012477 5 RNSYGKRSHSQTDYADHGPNKRRY 28 (462)
Q Consensus 5 ~~~~~~r~~~~~~~~~~~~~~~~~ 28 (462)
|+...||+++ ||++++-..||++
T Consensus 4 rrrrrkrkre-wdddddppkkrrr 26 (28)
T 3ukx_C 4 RRRRRKRKRE-WDDDDDPPKKRRR 26 (28)
T ss_dssp --CCCCCCCC-CCCSSSCCSCCCC
T ss_pred hHHHHHhhcc-cccCCCchhhhhc
Confidence 4445566655 6665554444443
No 91
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=62.39 E-value=2.9 Score=35.07 Aligned_cols=65 Identities=11% Similarity=-0.040 Sum_probs=41.6
Q ss_pred EEEEEEeCCceeeeecCCchHHHHHHhhcCceEEEecCCCCCCcCCCCCceEEEEcCHHHHHHHHHHHHHHHhc
Q 012477 141 TAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASRLHD 214 (462)
Q Consensus 141 ~~~l~ip~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~l~~ 214 (462)
++.+-+.....|.||||.|.|++.|+--+..-+ .+.. ...=.+-+.|-.+.-.+.+..+...+.+
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~~~~v--n~~~-------~~~V~LDve~YRerReetL~~lA~~~A~ 98 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLLFNWI--HPTY-------GYSIRLEISTFLQNQEKVMDTQLQSVIM 98 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHHHHHH--HHHH-------SCEEEEEETTHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHHHHHh--hhcC-------CceEEEEhHHhHHHHHHHHHHHHHHHHH
Confidence 466778889999999999999999985442211 1110 0011233456577777777777666655
No 92
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=60.30 E-value=2.5 Score=32.22 Aligned_cols=28 Identities=21% Similarity=0.465 Sum_probs=23.5
Q ss_pred EEEEEecCCccceeecCCCchHHHHHHh
Q 012477 371 TTRLLVPTSRIGCLIGKGGSIITEMRRL 398 (462)
Q Consensus 371 t~~i~Vp~~~~g~IIGk~G~~I~~I~~~ 398 (462)
..++.|-...-|.|||++|..|++|+..
T Consensus 36 ~i~I~I~tarPg~vIGkkG~~Ie~L~~~ 63 (92)
T 1wh9_A 36 RTEIIILATRTQNVLGEKGRRIRELTAV 63 (92)
T ss_dssp CEEEEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCcHHHHHHHHH
Confidence 4667788888899999999999988754
No 93
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=56.35 E-value=28 Score=24.08 Aligned_cols=46 Identities=17% Similarity=0.280 Sum_probs=31.8
Q ss_pred hHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhh
Q 012477 391 IITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRAN 445 (462)
Q Consensus 391 ~I~~I~~~sga~I~i~~~~~~P~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~~ 445 (462)
.|++-++..|+- ...- +.++-.|.|+|-|++|.+-+..=.++|..+
T Consensus 22 mirqarkfagtv-tytl--------dgndleiritgvpeqvrkelakeaerlake 67 (85)
T 2kl8_A 22 MIRQARKFAGTV-TYTL--------DGNDLEIRITGVPEQVRKELAKEAERLAKE 67 (85)
T ss_dssp HHHHHTTTTCEE-EEEE--------CSSCEEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcceE-EEEe--------cCCeeEEEEecChHHHHHHHHHHHHHHHHh
Confidence 455555666653 2221 345668999999999999887777887765
No 94
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=50.37 E-value=19 Score=32.22 Aligned_cols=55 Identities=20% Similarity=0.294 Sum_probs=43.6
Q ss_pred EEEecCCccceeecCCCchHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHH
Q 012477 373 RLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQV 438 (462)
Q Consensus 373 ~i~Vp~~~~g~IIGk~G~~I~~I~~~sga~I~i~~~~~~P~~~~~~~~~v~I~G~~~~v~~A~~~I 438 (462)
-+.++...+..++|++++.++.|.+.+++.|.|- .+-.|-|.++......+...|
T Consensus 139 v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG-----------~NG~IWi~~~~~~~~~~~~ai 193 (229)
T 2ba0_A 139 IVAINPARVPRVIGKKGSMIKLLKSELDVQIVVG-----------QNGLIWVNGDRRKVSIAEEAI 193 (229)
T ss_dssp EEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEEC-----------TTSEEEEESCHHHHHHHHHHH
T ss_pred EEEECHHHhHHHhcCCchHHHHhcccCCeEEEEE-----------CCcEEEEeCCchhHHHHHHHH
Confidence 3578899999999999999999999999999983 234778999876554444444
No 95
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=46.47 E-value=28 Score=31.26 Aligned_cols=62 Identities=13% Similarity=0.251 Sum_probs=45.1
Q ss_pred EEEEecCCccceeecCCCchHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcC-HHHHHHHHHHHHHHHHhh
Q 012477 372 TRLLVPTSRIGCLIGKGGSIITEMRRLTKANIRILPKENLPKIASEDDEMVQISGD-LDLAKDALIQVMTRLRAN 445 (462)
Q Consensus 372 ~~i~Vp~~~~g~IIGk~G~~I~~I~~~sga~I~i~~~~~~P~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~l~~~ 445 (462)
.-+.++...+..++|++|+.+..|.+.+++.|.+-. +..|-|.+. +.....+...| ..++.+
T Consensus 150 ~vv~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~vG~-----------NG~IWi~~~~~~~~~~~~~ai-~~~e~~ 212 (235)
T 2z0s_A 150 KIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFVAR-----------NGRIHLECPNEDLEAIAVMAI-KIIDEE 212 (235)
T ss_dssp EEEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEEET-----------TTEEEEECSCHHHHHHHHHHH-HHHHHC
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEEeC-----------CCEEEEecCCHHHHHHHHHHH-HHHHhh
Confidence 346788999999999999999999999999999842 357888864 44444444444 334443
No 96
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=43.39 E-value=51 Score=25.80 Aligned_cols=47 Identities=21% Similarity=0.351 Sum_probs=34.0
Q ss_pred hHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhhh
Q 012477 391 IITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANL 446 (462)
Q Consensus 391 ~I~~I~~~sga~I~i~~~~~~P~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~~~ 446 (462)
.|++-|+..|+--.-. +.++-.|.|+|-|++|.+-+..=.++|..++
T Consensus 104 mirqarkfagtvtytl---------~gn~l~i~itgvpeqvrkelakeaerl~~ef 150 (170)
T 4hhu_A 104 MIRQARKFAGTVTYTL---------SGNRLVIVITGVPEQVRKELAKEAERLKAEF 150 (170)
T ss_dssp HHHHHHHTTCEEEEEE---------CSSEEEEEEESCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcceEEEEE---------eCCEEEEEEeCCcHHHHHHHHHHHHHHHHhc
Confidence 4677777777642221 2455679999999999998888888887763
No 97
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=41.16 E-value=7.9 Score=34.65 Aligned_cols=32 Identities=16% Similarity=0.235 Sum_probs=26.4
Q ss_pred EEEEeeCCccceeecCCchHHHHHHHHhCCeE
Q 012477 45 YRYLCPIRKIGSIIGRGGEIVKQLRIDTKSKI 76 (462)
Q Consensus 45 ~~ilvp~~~~g~IIGk~G~~Ik~i~~~tg~~I 76 (462)
+.+.+..+..|.+||++|+++..||--+...+
T Consensus 94 i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~v 125 (225)
T 3gku_A 94 MNVNLKGDDMGILIGKRGQTLDSLQYLVSLVV 125 (225)
T ss_dssp EEEEEECHHHHHCSTTHHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCccceeecCCCeEhHHHHHHHHHHH
Confidence 45556778899999999999999998876444
No 98
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=40.13 E-value=51 Score=25.80 Aligned_cols=47 Identities=21% Similarity=0.351 Sum_probs=33.9
Q ss_pred hHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHHHHHHHHHHHHHHHHhhh
Q 012477 391 IITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLDLAKDALIQVMTRLRANL 446 (462)
Q Consensus 391 ~I~~I~~~sga~I~i~~~~~~P~~~~~~~~~v~I~G~~~~v~~A~~~I~~~l~~~~ 446 (462)
.|++-|+..|+--.-. +.++-.|.|+|-|++|.+-+..=.++|..++
T Consensus 23 mirqarkfagtvtytl---------~gn~l~i~itgvpeqvrkelakeaerl~~ef 69 (170)
T 4hhu_A 23 MIRQARKFAGTVTYTL---------SGNRLVIVITGVPEQVRKELAKEAERLKAEF 69 (170)
T ss_dssp HHHHHHHTTCEEEEEE---------ETTEEEEEEESCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcceEEEEE---------eCCEEEEEEeCCcHHHHHHHHHHHHHHHHhc
Confidence 4667777777642221 2455679999999999998888888888763
No 99
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=35.32 E-value=11 Score=33.83 Aligned_cols=28 Identities=11% Similarity=0.298 Sum_probs=24.1
Q ss_pred EEEEeeCCccceeecCCchHHHHHHHHh
Q 012477 45 YRYLCPIRKIGSIIGRGGEIVKQLRIDT 72 (462)
Q Consensus 45 ~~ilvp~~~~g~IIGk~G~~Ik~i~~~t 72 (462)
.++.|....-|.|||++|..|++|+...
T Consensus 46 i~I~I~t~rPg~VIGkkG~~I~~L~~~l 73 (240)
T 3u5c_D 46 TEVIIRATRTQDVLGENGRRINELTLLV 73 (240)
T ss_dssp EEEEEEESCHHHHHTTTTCTHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHHH
Confidence 5778888899999999999999887653
No 100
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=35.31 E-value=15 Score=33.25 Aligned_cols=30 Identities=23% Similarity=0.103 Sum_probs=25.2
Q ss_pred eEEEEEeeCCccceeecCCchHHHHHHHHh
Q 012477 43 TVYRYLCPIRKIGSIIGRGGEIVKQLRIDT 72 (462)
Q Consensus 43 ~~~~ilvp~~~~g~IIGk~G~~Ik~i~~~t 72 (462)
-..++.|....-|.|||++|+.|++|+...
T Consensus 47 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~L 76 (243)
T 2xzm_C 47 TKTEIRIKATKPQQVIGVEGKKHKELTQFL 76 (243)
T ss_dssp SCEEEEEEESCHHHHHCSSSHHHHHHHHHH
T ss_pred CeEEEEEEcCCCceEECCCchHHHHHHHHH
Confidence 346788888999999999999999988753
No 101
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=35.18 E-value=14 Score=32.69 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=23.0
Q ss_pred EEEEeeCCccceeecCCchHHHHHHHH
Q 012477 45 YRYLCPIRKIGSIIGRGGEIVKQLRID 71 (462)
Q Consensus 45 ~~ilvp~~~~g~IIGk~G~~Ik~i~~~ 71 (462)
.++.|....-|.|||++|+.|++|+..
T Consensus 42 ~~I~I~t~rPg~vIG~~G~~I~~L~~~ 68 (210)
T 3j20_C 42 TKVIIFAANPGYVIGRGGRRIRELTRI 68 (210)
T ss_dssp CEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 467778888999999999999988765
No 102
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=34.04 E-value=14 Score=34.64 Aligned_cols=39 Identities=15% Similarity=0.405 Sum_probs=29.9
Q ss_pred CcceEEEEEecCCcc-ceeecCCCchHHHHHH--------hhCceEEE
Q 012477 367 LISFTTRLLVPTSRI-GCLIGKGGSIITEMRR--------LTKANIRI 405 (462)
Q Consensus 367 ~~~~t~~i~Vp~~~~-g~IIGk~G~~I~~I~~--------~sga~I~i 405 (462)
...+...+.|..+-+ +-|||++|+.|++|.. .+|++|.+
T Consensus 237 ~~~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l 284 (308)
T 3iev_A 237 MLVIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYL 284 (308)
T ss_dssp SEEEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred eEEEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEE
Confidence 346778888887655 8899999999998764 46776665
No 103
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=33.13 E-value=15 Score=33.03 Aligned_cols=28 Identities=25% Similarity=0.490 Sum_probs=23.6
Q ss_pred EEEEEecCCccceeecCCCchHHHHHHh
Q 012477 371 TTRLLVPTSRIGCLIGKGGSIITEMRRL 398 (462)
Q Consensus 371 t~~i~Vp~~~~g~IIGk~G~~I~~I~~~ 398 (462)
..++.|-...-|.|||++|+.|++|+..
T Consensus 45 ~i~I~I~t~rPg~VIGkkG~~I~~L~~~ 72 (240)
T 3u5c_D 45 KTEVIIRATRTQDVLGENGRRINELTLL 72 (240)
T ss_dssp CEEEEEEESCHHHHHTTTTCTHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 4567787888899999999999988754
No 104
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=31.60 E-value=12 Score=33.45 Aligned_cols=29 Identities=10% Similarity=0.239 Sum_probs=24.9
Q ss_pred EEEEEeeCCccceeecCCchHHHHHHHHh
Q 012477 44 VYRYLCPIRKIGSIIGRGGEIVKQLRIDT 72 (462)
Q Consensus 44 ~~~ilvp~~~~g~IIGk~G~~Ik~i~~~t 72 (462)
..++.|....-|.|||++|+.|++|+...
T Consensus 45 ~i~I~I~tarPg~vIGkkG~~I~~L~~~l 73 (227)
T 3iz6_B 45 RTEIIIRATRTQNVLGEKGRRIRELTSVV 73 (227)
T ss_dssp EECCEEECTTHHHHHCSSSSHHHHHHHHH
T ss_pred cEEEEEEeCCCceEEcCCchhHHHHHHHH
Confidence 46788889999999999999999987653
No 105
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=31.44 E-value=73 Score=28.35 Aligned_cols=59 Identities=24% Similarity=0.311 Sum_probs=44.1
Q ss_pred EEEEEeCCceeeeecCCchHHHHHHhhcCceEEEecCCCCCCcCCCCCceEEEEcCHHHHHHHHHHHHHH
Q 012477 142 AKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDELVQISGEASVVKKALCQIASR 211 (462)
Q Consensus 142 ~~l~ip~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~r~v~I~G~~~~v~~A~~~I~~~ 211 (462)
+-+-++...+.+++|+++..++.|.+.+++.|-+-. ...|-|.+.......+...|...
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG~-----------NG~IWi~~~~~~~~~~~~ai~~~ 196 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQ-----------NGLIWVNGDRRKVSIAEEAIYLI 196 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEECT-----------TSEEEEESCHHHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEEEC-----------CcEEEEeCCchhHHHHHHHHHHH
Confidence 445778888889999999999999999999998833 34677898877555444444433
No 106
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=30.66 E-value=14 Score=32.53 Aligned_cols=36 Identities=28% Similarity=0.507 Sum_probs=26.9
Q ss_pred EEEEEecCCccceeecCCCchHHHHHH----hhC---ceEEEe
Q 012477 371 TTRLLVPTSRIGCLIGKGGSIITEMRR----LTK---ANIRIL 406 (462)
Q Consensus 371 t~~i~Vp~~~~g~IIGk~G~~I~~I~~----~sg---a~I~i~ 406 (462)
.+++.|-...-|.|||++|+.|++|+. .++ .+|.|.
T Consensus 41 ~~~I~I~t~rPg~vIG~~G~~I~~L~~~l~k~~~~~~v~I~i~ 83 (210)
T 3j20_C 41 GTKVIIFAANPGYVIGRGGRRIRELTRILEKQFGLENPQIEVE 83 (210)
T ss_dssp CCEEEEEESCHHHHHCSSSHHHHHHHHHHHHHSSCSSCEEEEE
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHHHHHHHhCCCceEEEEE
Confidence 355677777889999999999998765 455 455553
No 107
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=29.68 E-value=19 Score=32.55 Aligned_cols=29 Identities=17% Similarity=0.287 Sum_probs=24.6
Q ss_pred eEEEEEecCCccceeecCCCchHHHHHHh
Q 012477 370 FTTRLLVPTSRIGCLIGKGGSIITEMRRL 398 (462)
Q Consensus 370 ~t~~i~Vp~~~~g~IIGk~G~~I~~I~~~ 398 (462)
...++.|-...-|.|||++|..|++|+..
T Consensus 47 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 75 (243)
T 2xzm_C 47 TKTEIRIKATKPQQVIGVEGKKHKELTQF 75 (243)
T ss_dssp SCEEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred CeEEEEEEcCCCceEECCCchHHHHHHHH
Confidence 45677888888999999999999998865
No 108
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=28.53 E-value=12 Score=32.86 Aligned_cols=27 Identities=33% Similarity=0.428 Sum_probs=22.2
Q ss_pred EEEEeeCCccceeecCCchHHHHHHHH
Q 012477 45 YRYLCPIRKIGSIIGRGGEIVKQLRID 71 (462)
Q Consensus 45 ~~ilvp~~~~g~IIGk~G~~Ik~i~~~ 71 (462)
.++.|....-|.|||++|+.|++|+.+
T Consensus 63 i~I~I~~~rpg~viGk~G~~i~~L~~~ 89 (206)
T 3r8n_C 63 IRVTIHTARPGIVIGKKGEDVEKLRKV 89 (206)
T ss_dssp BCCEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred EEEEEEECCCCccccCcchHHHHHHHH
Confidence 456677788899999999999888754
No 109
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=28.03 E-value=15 Score=32.75 Aligned_cols=66 Identities=17% Similarity=0.224 Sum_probs=40.3
Q ss_pred EEEEEEeCCceeeeecCCchHHHHHHhhcCceEEEecCCCCCCcCCCCCc-eEEEEcCHHHHHHHHHHHHHHHhc
Q 012477 141 TAKLLVPSDQIGCVIGKGGQIVQNIRSETGAQIRILKDEHLPSCALRSDE-LVQISGEASVVKKALCQIASRLHD 214 (462)
Q Consensus 141 ~~~l~ip~~~~g~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~~r-~v~I~G~~~~v~~A~~~I~~~l~~ 214 (462)
.+.+.+.....+.+||+.|.+++.|+.-+..-++ .... ...+ .+-|.|-.+.-...+..+...+.+
T Consensus 93 ~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~vn--~~~~------~~~rv~LDi~~YR~rR~e~L~~lA~~~A~ 159 (225)
T 3gku_A 93 EMNVNLKGDDMGILIGKRGQTLDSLQYLVSLVVN--KSSS------DYIRVKLDTENYRERRKETLETLAKNIAY 159 (225)
T ss_dssp EEEEEEECHHHHHCSTTHHHHHHHHHHHHHHHHH--HTCS------SCCEEEEESTTHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCccceeecCCCeEhHHHHHHHHHHHH--hcCC------CceEEEEecchHHHHHHHHHHHHHHHHHH
Confidence 4566677788999999999999999977664432 2100 1111 233456566555555555555443
No 110
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=27.95 E-value=16 Score=32.68 Aligned_cols=29 Identities=21% Similarity=0.488 Sum_probs=24.1
Q ss_pred eEEEEEecCCccceeecCCCchHHHHHHh
Q 012477 370 FTTRLLVPTSRIGCLIGKGGSIITEMRRL 398 (462)
Q Consensus 370 ~t~~i~Vp~~~~g~IIGk~G~~I~~I~~~ 398 (462)
...++.|-...-|.|||++|+.|++|+..
T Consensus 44 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 72 (227)
T 3iz6_B 44 MRTEIIIRATRTQNVLGEKGRRIRELTSV 72 (227)
T ss_dssp TEECCEEECTTHHHHHCSSSSHHHHHHHH
T ss_pred CcEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 34667788888999999999999988754
No 111
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=27.59 E-value=14 Score=33.43 Aligned_cols=29 Identities=10% Similarity=0.234 Sum_probs=24.8
Q ss_pred EEEEEeeCCccceeecCCchHHHHHHHHh
Q 012477 44 VYRYLCPIRKIGSIIGRGGEIVKQLRIDT 72 (462)
Q Consensus 44 ~~~ilvp~~~~g~IIGk~G~~Ik~i~~~t 72 (462)
..++.|....-|.|||++|..|++|+...
T Consensus 45 ~i~I~I~tarPg~vIGkkG~~I~~L~~~L 73 (243)
T 2zkq_c 45 RTEIIILATRTQNVLGEKGRRIRELTAVV 73 (243)
T ss_dssp EECCEEEESCHHHHHCGGGHHHHHHHHHH
T ss_pred cEEEEEEeCCCceEEcCCchHHHHHHHHH
Confidence 45677888899999999999999988764
No 112
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=26.19 E-value=14 Score=33.08 Aligned_cols=27 Identities=33% Similarity=0.428 Sum_probs=22.4
Q ss_pred EEEEeeCCccceeecCCchHHHHHHHH
Q 012477 45 YRYLCPIRKIGSIIGRGGEIVKQLRID 71 (462)
Q Consensus 45 ~~ilvp~~~~g~IIGk~G~~Ik~i~~~ 71 (462)
.++.|....-|.|||++|+.|++|+.+
T Consensus 64 i~I~I~t~rPg~vIGkkG~~I~~L~~~ 90 (233)
T 3i1m_C 64 IRVTIHTARPGIVIGKKGEDVEKLRKV 90 (233)
T ss_dssp BCCEEEESCHHHHHCSTTHHHHHHHHH
T ss_pred EEEEEEECCCCccccCcchHHHHHHHH
Confidence 456677788899999999999888754
No 113
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=25.99 E-value=26 Score=32.71 Aligned_cols=37 Identities=14% Similarity=0.080 Sum_probs=27.8
Q ss_pred ceEEEEEeeCC-ccceeecCCchHHHHHHH--------HhCCeEEE
Q 012477 42 DTVYRYLCPIR-KIGSIIGRGGEIVKQLRI--------DTKSKIRI 78 (462)
Q Consensus 42 ~~~~~ilvp~~-~~g~IIGk~G~~Ik~i~~--------~tg~~I~v 78 (462)
.+...++|..+ +.+.|||++|+.||+|.. -++++|.+
T Consensus 239 ~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l 284 (308)
T 3iev_A 239 VIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYL 284 (308)
T ss_dssp EEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred EEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEE
Confidence 35666777776 567899999999997753 46777765
No 114
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=24.44 E-value=21 Score=32.20 Aligned_cols=27 Identities=37% Similarity=0.609 Sum_probs=22.3
Q ss_pred EEEEeeCCccceeecCCchHHHHHHHH
Q 012477 45 YRYLCPIRKIGSIIGRGGEIVKQLRID 71 (462)
Q Consensus 45 ~~ilvp~~~~g~IIGk~G~~Ik~i~~~ 71 (462)
.++.|....-|.|||++|+.|++|++.
T Consensus 64 i~I~I~tarPg~vIGkkG~~I~~L~~~ 90 (239)
T 2vqe_C 64 VAVTVHVAKPGVVIGRGGERIRVLREE 90 (239)
T ss_dssp BCCEEEESCGGGTSCSSSSHHHHHHHH
T ss_pred EEEEEEeCCCcceecCCchHHHHHHHH
Confidence 446667778899999999999988865
No 115
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=23.09 E-value=16 Score=32.09 Aligned_cols=34 Identities=29% Similarity=0.549 Sum_probs=25.0
Q ss_pred EEEEecCCccceeecCCCchHHHHHH----hhCceEEE
Q 012477 372 TRLLVPTSRIGCLIGKGGSIITEMRR----LTKANIRI 405 (462)
Q Consensus 372 ~~i~Vp~~~~g~IIGk~G~~I~~I~~----~sga~I~i 405 (462)
.++.|-...-|.|||++|+.|++|+. .++..+.|
T Consensus 63 i~I~I~~~rpg~viGk~G~~i~~L~~~l~k~~~~~v~I 100 (206)
T 3r8n_C 63 IRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQI 100 (206)
T ss_dssp BCCEEEESCHHHHHCSSSHHHHHHHHHHHHHHSSCBCC
T ss_pred EEEEEEECCCCccccCcchHHHHHHHHHHHHHCCceEE
Confidence 44666677789999999999998875 45554443
No 116
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=22.40 E-value=52 Score=28.03 Aligned_cols=47 Identities=11% Similarity=-0.028 Sum_probs=37.9
Q ss_pred EEEEecCCccceeecCCCc-hHHHHHHhhCceEEEecCCCCCCCCCCCCceEEEEcCHH
Q 012477 372 TRLLVPTSRIGCLIGKGGS-IITEMRRLTKANIRILPKENLPKIASEDDEMVQISGDLD 429 (462)
Q Consensus 372 ~~i~Vp~~~~g~IIGk~G~-~I~~I~~~sga~I~i~~~~~~P~~~~~~~~~v~I~G~~~ 429 (462)
.-+.|+..++..++|++|+ .++.|.+.+++.|.|-. +-.|=|.+...
T Consensus 93 ~l~~v~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG~-----------NG~IWi~~~~~ 140 (175)
T 2ja9_A 93 MIIDVNLNFARQLLFNNDFPLLKVLAAHTKFEVAIGL-----------NGKIWVKCEEL 140 (175)
T ss_dssp EEEECCHHHHHHHHHCTTCCHHHHHHTTCCCEEEEET-----------TTEEEEECSSH
T ss_pred EEEEEcHHHhhHHhcCCCcchHHhhhccCCeEEEEEC-----------CcEEEEecCCH
Confidence 3477999999999999898 89999999999999843 24677886543
No 117
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=22.31 E-value=22 Score=33.15 Aligned_cols=37 Identities=24% Similarity=0.384 Sum_probs=26.8
Q ss_pred ceEEEEEecCC-ccceeecCCCchHHHHH--------HhhCceEEE
Q 012477 369 SFTTRLLVPTS-RIGCLIGKGGSIITEMR--------RLTKANIRI 405 (462)
Q Consensus 369 ~~t~~i~Vp~~-~~g~IIGk~G~~I~~I~--------~~sga~I~i 405 (462)
.+...+.|..+ +.+.|||++|+.||+|. +..|++|.+
T Consensus 229 ~i~~~i~ve~~~~k~iiig~~g~~lk~i~~~ar~~~~~~~~~~v~l 274 (301)
T 1wf3_A 229 YIKAILYVERPSQKAIVIGEGGRKIKEIGQATRKQLEALLGKKVYL 274 (301)
T ss_dssp EEEEEEEESSHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTSEEEE
T ss_pred EEEEEEEEeeCCceEEEEeCCchHHHHHHHHHHHHHHHHHCCceEE
Confidence 45566677644 45899999999999775 456777665
No 118
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=21.93 E-value=18 Score=32.65 Aligned_cols=29 Identities=21% Similarity=0.424 Sum_probs=24.3
Q ss_pred eEEEEEecCCccceeecCCCchHHHHHHh
Q 012477 370 FTTRLLVPTSRIGCLIGKGGSIITEMRRL 398 (462)
Q Consensus 370 ~t~~i~Vp~~~~g~IIGk~G~~I~~I~~~ 398 (462)
...++.|-...-|.|||++|..|++|+..
T Consensus 44 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~ 72 (243)
T 2zkq_c 44 TRTEIIILATRTQNVLGEKGRRIRELTAV 72 (243)
T ss_dssp TEECCEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred CcEEEEEEeCCCceEEcCCchHHHHHHHH
Confidence 35667777888899999999999998865
No 119
>2vqe_C 30S ribosomal protein S3; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} PDB: 1gix_F* 1hnw_C* 1hnx_C* 1hnz_C* 1hr0_C 1ibk_C* 1ibl_C* 1ibm_C 1j5e_C 1jgo_F* 1jgp_F* 1jgq_F* 1ml5_F* 1n32_C* 1n33_C* 1n34_C 1n36_C 1xmo_C* 1xmq_C* 1xnq_C* ...
Probab=21.66 E-value=26 Score=31.53 Aligned_cols=27 Identities=30% Similarity=0.533 Sum_probs=21.4
Q ss_pred EEEEecCCccceeecCCCchHHHHHHh
Q 012477 372 TRLLVPTSRIGCLIGKGGSIITEMRRL 398 (462)
Q Consensus 372 ~~i~Vp~~~~g~IIGk~G~~I~~I~~~ 398 (462)
.++.|-...-|.|||++|+.|++|+..
T Consensus 64 i~I~I~tarPg~vIGkkG~~I~~L~~~ 90 (239)
T 2vqe_C 64 VAVTVHVAKPGVVIGRGGERIRVLREE 90 (239)
T ss_dssp BCCEEEESCGGGTSCSSSSHHHHHHHH
T ss_pred EEEEEEeCCCcceecCCchHHHHHHHH
Confidence 335566677899999999999988765
No 120
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=21.36 E-value=19 Score=32.35 Aligned_cols=27 Identities=33% Similarity=0.636 Sum_probs=21.8
Q ss_pred EEEEecCCccceeecCCCchHHHHHHh
Q 012477 372 TRLLVPTSRIGCLIGKGGSIITEMRRL 398 (462)
Q Consensus 372 ~~i~Vp~~~~g~IIGk~G~~I~~I~~~ 398 (462)
.+|.|-...-|.|||++|+.|++|+..
T Consensus 64 i~I~I~t~rPg~vIGkkG~~I~~L~~~ 90 (233)
T 3i1m_C 64 IRVTIHTARPGIVIGKKGEDVEKLRKV 90 (233)
T ss_dssp BCCEEEESCHHHHHCSTTHHHHHHHHH
T ss_pred EEEEEEECCCCccccCcchHHHHHHHH
Confidence 446666778899999999999988754
No 121
>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=20.77 E-value=19 Score=32.01 Aligned_cols=28 Identities=14% Similarity=0.145 Sum_probs=22.4
Q ss_pred EEEEeeCCccceeecCCchHHHHHHHHh
Q 012477 45 YRYLCPIRKIGSIIGRGGEIVKQLRIDT 72 (462)
Q Consensus 45 ~~ilvp~~~~g~IIGk~G~~Ik~i~~~t 72 (462)
.++.|....-+.|||++|+.|++|+++-
T Consensus 72 i~I~I~~~rPg~vIGk~g~~i~~L~~~l 99 (218)
T 3bbn_C 72 IQVIIHMGFPKLLIENRPQGVEDLKINV 99 (218)
T ss_dssp BCCEEEESCTTTTSCSSSCTTHHHHHHH
T ss_pred EEEEEEecCCCcEecCCcHHHHHHHHHH
Confidence 4456677778999999999999887653
No 122
>3bbn_C Ribosomal protein S3; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=20.04 E-value=25 Score=31.21 Aligned_cols=26 Identities=8% Similarity=0.084 Sum_probs=20.6
Q ss_pred EEEecCCccceeecCCCchHHHHHHh
Q 012477 373 RLLVPTSRIGCLIGKGGSIITEMRRL 398 (462)
Q Consensus 373 ~i~Vp~~~~g~IIGk~G~~I~~I~~~ 398 (462)
++.|-...-|.|||++|..|++|++.
T Consensus 73 ~I~I~~~rPg~vIGk~g~~i~~L~~~ 98 (218)
T 3bbn_C 73 QVIIHMGFPKLLIENRPQGVEDLKIN 98 (218)
T ss_dssp CCEEEESCTTTTSCSSSCTTHHHHHH
T ss_pred EEEEEecCCCcEecCCcHHHHHHHHH
Confidence 35556667789999999999988754
Done!