Query 012478
Match_columns 462
No_of_seqs 232 out of 1628
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 03:03:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012478.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012478hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11320 prpB 2-methylisocitra 100.0 6.2E-74 1.3E-78 572.3 34.9 286 75-364 3-291 (292)
2 TIGR02317 prpB methylisocitrat 100.0 6E-74 1.3E-78 570.8 34.2 281 78-363 2-284 (285)
3 COG2513 PrpB PEP phosphonomuta 100.0 2.5E-74 5.5E-79 568.9 29.9 282 76-362 5-288 (289)
4 TIGR02319 CPEP_Pphonmut carbox 100.0 2.4E-73 5.3E-78 568.4 34.6 286 76-365 3-293 (294)
5 TIGR02321 Pphn_pyruv_hyd phosp 100.0 1.2E-70 2.7E-75 548.3 34.1 282 76-363 2-290 (290)
6 PRK15063 isocitrate lyase; Pro 100.0 3.4E-69 7.4E-74 557.1 31.1 289 40-331 4-367 (428)
7 TIGR02320 PEP_mutase phosphoen 100.0 9.2E-63 2E-67 490.8 32.0 265 81-353 1-285 (285)
8 PF13714 PEP_mutase: Phosphoen 100.0 1.5E-62 3.2E-67 478.3 27.5 235 81-329 1-238 (238)
9 cd00377 ICL_PEPM Members of th 100.0 5.9E-59 1.3E-63 453.3 29.5 240 81-326 1-242 (243)
10 KOG1260 Isocitrate lyase [Ener 100.0 1.2E-50 2.5E-55 415.7 13.6 400 46-459 9-474 (492)
11 TIGR01346 isocit_lyase isocitr 100.0 7.9E-47 1.7E-51 397.2 25.1 276 47-330 3-468 (527)
12 COG2224 AceA Isocitrate lyase 100.0 9.5E-46 2.1E-50 377.0 22.3 286 42-330 6-372 (433)
13 PLN02892 isocitrate lyase 100.0 2E-43 4.3E-48 373.2 26.3 285 44-330 21-490 (570)
14 PF00463 ICL: Isocitrate lyase 100.0 1E-40 2.2E-45 350.1 23.5 277 46-330 3-467 (526)
15 cd06556 ICL_KPHMT Members of t 100.0 1.6E-40 3.4E-45 324.3 22.7 180 80-285 3-199 (240)
16 PRK06498 isocitrate lyase; Pro 100.0 7.3E-39 1.6E-43 333.5 25.4 279 51-329 16-470 (531)
17 cd06557 KPHMT-like Ketopantoat 100.0 2.8E-36 6E-41 296.6 20.9 178 79-281 2-197 (254)
18 PRK00311 panB 3-methyl-2-oxobu 100.0 1.2E-35 2.7E-40 293.4 21.8 179 78-281 4-200 (264)
19 TIGR00222 panB 3-methyl-2-oxob 100.0 1.6E-30 3.5E-35 256.6 25.5 233 78-337 4-259 (263)
20 PLN02424 ketopantoate hydroxym 100.0 1.1E-29 2.5E-34 256.5 18.8 234 77-338 23-287 (332)
21 PF02548 Pantoate_transf: Keto 99.9 3.4E-26 7.3E-31 225.4 14.1 180 78-281 5-201 (261)
22 COG0413 PanB Ketopantoate hydr 99.9 1.1E-24 2.4E-29 213.1 17.0 234 78-338 4-261 (268)
23 KOG2949 Ketopantoate hydroxyme 99.8 4.6E-18 9.9E-23 164.4 14.6 182 75-280 24-223 (306)
24 PF09370 TIM-br_sig_trns: TIM- 98.1 8.5E-05 1.9E-09 74.4 15.3 164 78-261 4-178 (268)
25 cd00958 DhnA Class I fructose- 98.0 0.0013 2.8E-08 63.6 20.9 138 164-316 75-220 (235)
26 PRK08185 hypothetical protein; 98.0 0.0023 5.1E-08 64.9 23.2 215 80-326 4-244 (283)
27 TIGR01859 fruc_bis_ald_ fructo 97.9 0.0057 1.2E-07 61.9 24.2 212 79-326 6-246 (282)
28 TIGR01037 pyrD_sub1_fam dihydr 97.9 0.0035 7.6E-08 62.9 22.1 205 90-316 14-269 (300)
29 PRK06801 hypothetical protein; 97.9 0.0039 8.5E-08 63.3 22.5 217 79-326 8-249 (286)
30 TIGR01949 AroFGH_arch predicte 97.8 0.00098 2.1E-08 65.9 15.8 134 167-316 92-233 (258)
31 cd00952 CHBPH_aldolase Trans-o 97.8 0.00076 1.7E-08 68.6 15.4 126 160-302 24-159 (309)
32 TIGR00343 pyridoxal 5'-phospha 97.8 0.0036 7.7E-08 63.6 19.7 186 80-315 4-233 (287)
33 cd02810 DHOD_DHPD_FMN Dihydroo 97.7 0.0077 1.7E-07 59.9 21.9 164 133-315 80-277 (289)
34 PRK04180 pyridoxal biosynthesi 97.7 0.0013 2.7E-08 67.0 16.0 186 79-314 10-238 (293)
35 PRK07259 dihydroorotate dehydr 97.7 0.0085 1.8E-07 60.2 21.8 200 94-315 19-268 (301)
36 cd00954 NAL N-Acetylneuraminic 97.7 0.0014 3.1E-08 65.6 16.1 123 163-302 19-152 (288)
37 cd04727 pdxS PdxS is a subunit 97.7 0.0047 1E-07 62.7 19.4 183 81-315 3-230 (283)
38 PRK07998 gatY putative fructos 97.7 0.028 6E-07 57.2 25.1 213 79-326 8-245 (283)
39 PRK13398 3-deoxy-7-phosphohept 97.7 0.0013 2.7E-08 66.1 14.9 140 76-217 78-262 (266)
40 PRK12738 kbaY tagatose-bisphos 97.6 0.024 5.2E-07 57.7 24.1 217 78-326 7-248 (286)
41 cd00947 TBP_aldolase_IIB Tagat 97.6 0.035 7.6E-07 56.3 25.0 216 80-326 4-242 (276)
42 PRK06806 fructose-bisphosphate 97.6 0.039 8.4E-07 55.9 25.3 212 79-325 8-245 (281)
43 PRK09195 gatY tagatose-bisphos 97.6 0.024 5.1E-07 57.7 23.6 217 79-326 8-248 (284)
44 PRK07315 fructose-bisphosphate 97.6 0.032 7E-07 56.8 24.7 214 79-328 8-250 (293)
45 PRK12857 fructose-1,6-bisphosp 97.6 0.028 6E-07 57.2 23.8 217 79-326 8-248 (284)
46 TIGR02313 HpaI-NOT-DapA 2,4-di 97.6 0.0022 4.9E-08 64.7 15.9 123 163-302 19-151 (294)
47 cd00945 Aldolase_Class_I Class 97.6 0.011 2.4E-07 54.1 18.9 173 104-310 21-201 (201)
48 TIGR01858 tag_bisphos_ald clas 97.5 0.04 8.7E-07 56.0 23.6 213 79-326 6-246 (282)
49 cd04740 DHOD_1B_like Dihydroor 97.5 0.032 6.8E-07 55.9 22.7 187 107-315 31-265 (296)
50 PRK12737 gatY tagatose-bisphos 97.5 0.037 8E-07 56.3 23.2 213 79-326 8-248 (284)
51 TIGR00683 nanA N-acetylneurami 97.5 0.0029 6.2E-08 63.8 15.1 124 163-302 19-152 (290)
52 PRK08673 3-deoxy-7-phosphohept 97.5 0.0026 5.7E-08 65.9 15.0 157 56-219 128-330 (335)
53 PRK13585 1-(5-phosphoribosyl)- 97.5 0.0057 1.2E-07 59.2 16.6 179 98-316 33-228 (241)
54 TIGR00167 cbbA ketose-bisphosp 97.5 0.036 7.7E-07 56.5 22.9 218 79-326 8-252 (288)
55 PRK04147 N-acetylneuraminate l 97.5 0.0023 4.9E-08 64.3 14.1 123 163-302 22-154 (293)
56 cd04732 HisA HisA. Phosphorib 97.5 0.0075 1.6E-07 57.8 16.8 177 98-315 30-224 (234)
57 PRK00748 1-(5-phosphoribosyl)- 97.5 0.0034 7.4E-08 60.2 14.4 183 97-315 30-225 (233)
58 PLN02417 dihydrodipicolinate s 97.5 0.0029 6.2E-08 63.4 14.3 126 160-302 17-149 (280)
59 PRK08610 fructose-bisphosphate 97.5 0.044 9.5E-07 55.9 22.9 214 79-326 8-249 (286)
60 cd00951 KDGDH 5-dehydro-4-deox 97.4 0.0042 9.1E-08 62.5 15.1 119 163-302 19-146 (289)
61 cd00945 Aldolase_Class_I Class 97.4 0.0035 7.6E-08 57.3 13.4 130 153-311 1-150 (201)
62 TIGR00737 nifR3_yhdG putative 97.4 0.0063 1.4E-07 61.9 16.5 198 93-315 15-227 (319)
63 cd00408 DHDPS-like Dihydrodipi 97.4 0.0056 1.2E-07 60.6 15.4 123 163-302 16-147 (281)
64 TIGR00674 dapA dihydrodipicoli 97.4 0.0044 9.6E-08 61.9 14.5 123 163-302 17-148 (285)
65 TIGR00007 phosphoribosylformim 97.4 0.0083 1.8E-07 57.7 15.7 178 98-315 29-223 (230)
66 PRK03170 dihydrodipicolinate s 97.4 0.0055 1.2E-07 61.4 14.9 123 163-302 20-151 (292)
67 COG0329 DapA Dihydrodipicolina 97.3 0.0067 1.5E-07 61.7 15.6 125 160-302 20-154 (299)
68 TIGR03249 KdgD 5-dehydro-4-deo 97.3 0.0057 1.2E-07 61.6 15.0 119 163-302 24-151 (296)
69 TIGR00742 yjbN tRNA dihydrouri 97.3 0.0074 1.6E-07 62.0 15.9 197 95-316 10-229 (318)
70 cd00953 KDG_aldolase KDG (2-ke 97.3 0.0058 1.3E-07 61.2 14.7 124 160-303 15-146 (279)
71 cd04731 HisF The cyclase subun 97.3 0.0043 9.4E-08 60.3 13.4 177 101-317 32-230 (243)
72 PRK13399 fructose-1,6-bisphosp 97.3 0.25 5.5E-06 51.7 26.4 224 79-326 8-293 (347)
73 PRK07709 fructose-bisphosphate 97.3 0.097 2.1E-06 53.4 22.7 213 80-326 9-249 (285)
74 TIGR01361 DAHP_synth_Bsub phos 97.2 0.0065 1.4E-07 60.8 13.9 153 56-215 60-258 (260)
75 cd00950 DHDPS Dihydrodipicolin 97.2 0.0085 1.8E-07 59.6 14.6 124 163-302 19-150 (284)
76 PRK13396 3-deoxy-7-phosphohept 97.2 0.0075 1.6E-07 63.0 14.6 161 54-221 134-341 (352)
77 PRK03620 5-dehydro-4-deoxygluc 97.2 0.0093 2E-07 60.4 14.9 119 163-302 26-153 (303)
78 cd00331 IGPS Indole-3-glycerol 97.2 0.02 4.4E-07 54.7 16.1 165 100-315 35-206 (217)
79 PF00701 DHDPS: Dihydrodipicol 97.2 0.0064 1.4E-07 60.7 13.1 97 163-273 20-120 (289)
80 PRK05286 dihydroorotate dehydr 97.2 0.053 1.1E-06 56.1 20.0 198 102-315 75-323 (344)
81 PRK13397 3-deoxy-7-phosphohept 97.1 0.0082 1.8E-07 60.1 13.3 150 56-212 50-245 (250)
82 PF01116 F_bP_aldolase: Fructo 97.1 0.017 3.8E-07 58.7 15.6 212 81-326 9-251 (287)
83 PRK07565 dihydroorotate dehydr 97.1 0.06 1.3E-06 55.3 19.4 182 125-328 79-286 (334)
84 PRK00278 trpC indole-3-glycero 97.1 0.022 4.7E-07 56.9 15.6 167 99-316 73-246 (260)
85 TIGR03572 WbuZ glycosyl amidat 97.0 0.018 3.9E-07 55.6 14.5 172 98-313 31-230 (232)
86 PRK05835 fructose-bisphosphate 97.0 0.29 6.3E-06 50.5 23.7 218 78-326 6-271 (307)
87 TIGR00736 nifR3_rel_arch TIM-b 97.0 0.047 1E-06 54.0 17.2 200 95-313 3-223 (231)
88 PRK10415 tRNA-dihydrouridine s 97.0 0.041 8.9E-07 56.5 17.3 201 90-315 12-229 (321)
89 PRK12595 bifunctional 3-deoxy- 97.0 0.023 5E-07 59.5 15.5 155 56-217 153-353 (360)
90 cd04739 DHOD_like Dihydroorota 97.0 0.053 1.2E-06 55.7 17.8 178 133-329 82-285 (325)
91 cd04740 DHOD_1B_like Dihydroor 96.9 0.093 2E-06 52.5 18.8 156 99-274 105-276 (296)
92 COG0042 tRNA-dihydrouridine sy 96.9 0.031 6.7E-07 57.6 15.3 210 87-315 10-233 (323)
93 CHL00162 thiG thiamin biosynth 96.9 0.016 3.5E-07 58.2 12.6 167 25-219 67-242 (267)
94 cd04738 DHOD_2_like Dihydrooro 96.9 0.18 3.8E-06 51.8 20.6 168 134-315 113-314 (327)
95 PRK11815 tRNA-dihydrouridine s 96.9 0.025 5.3E-07 58.4 14.4 200 90-315 13-238 (333)
96 PRK07084 fructose-bisphosphate 96.8 0.81 1.8E-05 47.6 25.7 217 79-326 14-284 (321)
97 cd02801 DUS_like_FMN Dihydrour 96.8 0.058 1.3E-06 51.5 15.4 196 95-315 9-218 (231)
98 PRK05198 2-dehydro-3-deoxyphos 96.8 0.062 1.3E-06 54.2 16.1 151 59-215 54-258 (264)
99 PRK10550 tRNA-dihydrouridine s 96.7 0.03 6.5E-07 57.4 13.3 227 94-350 9-254 (312)
100 TIGR01521 FruBisAldo_II_B fruc 96.6 0.93 2E-05 47.6 23.9 224 79-326 6-291 (347)
101 PRK05437 isopentenyl pyrophosp 96.6 0.4 8.8E-06 50.0 21.3 216 99-357 80-331 (352)
102 PRK10128 2-keto-3-deoxy-L-rham 96.6 0.45 9.7E-06 48.1 20.9 88 79-184 7-96 (267)
103 cd02803 OYE_like_FMN_family Ol 96.6 0.049 1.1E-06 55.0 14.3 140 167-315 143-316 (327)
104 cd02809 alpha_hydroxyacid_oxid 96.6 0.31 6.6E-06 49.4 19.9 200 99-357 84-297 (299)
105 PLN02424 ketopantoate hydroxym 96.6 0.024 5.2E-07 58.8 11.9 140 169-315 46-207 (332)
106 PF05690 ThiG: Thiazole biosyn 96.6 0.02 4.2E-07 57.0 10.7 174 18-219 52-228 (247)
107 PRK12457 2-dehydro-3-deoxyphos 96.6 0.11 2.5E-06 52.8 16.3 149 59-213 60-264 (281)
108 TIGR01362 KDO8P_synth 3-deoxy- 96.5 0.13 2.8E-06 51.8 16.3 150 59-214 46-249 (258)
109 cd02940 DHPD_FMN Dihydropyrimi 96.5 0.14 3E-06 51.9 16.5 124 125-259 70-199 (299)
110 cd00453 FTBP_aldolase_II Fruct 96.5 1.4 3E-05 46.2 24.0 228 80-327 4-289 (340)
111 PRK02083 imidazole glycerol ph 96.5 0.16 3.4E-06 50.0 16.4 176 101-315 35-232 (253)
112 cd02801 DUS_like_FMN Dihydrour 96.4 0.086 1.9E-06 50.3 14.1 94 93-187 60-160 (231)
113 PRK14024 phosphoribosyl isomer 96.4 0.22 4.9E-06 48.9 17.2 173 98-314 33-226 (241)
114 TIGR00735 hisF imidazoleglycer 96.4 0.2 4.3E-06 49.5 16.9 175 98-314 31-233 (254)
115 cd08205 RuBisCO_IV_RLP Ribulos 96.4 0.058 1.3E-06 56.6 13.6 109 142-262 121-232 (367)
116 PF01207 Dus: Dihydrouridine s 96.4 0.0063 1.4E-07 62.0 6.3 148 151-314 54-217 (309)
117 PLN03033 2-dehydro-3-deoxyphos 96.4 0.19 4.1E-06 51.4 16.5 151 59-215 60-269 (290)
118 cd02930 DCR_FMN 2,4-dienoyl-Co 96.4 0.083 1.8E-06 54.7 14.4 152 167-333 139-324 (353)
119 PRK07259 dihydroorotate dehydr 96.3 0.076 1.6E-06 53.4 13.6 153 101-274 109-279 (301)
120 TIGR02151 IPP_isom_2 isopenten 96.3 0.59 1.3E-05 48.3 20.4 188 98-318 72-291 (333)
121 PRK09196 fructose-1,6-bisphosp 96.3 1.8 3.9E-05 45.5 25.0 224 79-326 8-293 (347)
122 cd02932 OYE_YqiM_FMN Old yello 96.3 0.11 2.3E-06 53.3 14.8 139 167-314 156-324 (336)
123 cd02811 IDI-2_FMN Isopentenyl- 96.3 0.7 1.5E-05 47.6 20.6 217 99-357 72-324 (326)
124 cd08210 RLP_RrRLP Ribulose bis 96.3 0.23 4.9E-06 52.3 17.2 159 141-312 116-286 (364)
125 cd02940 DHPD_FMN Dihydropyrimi 96.3 0.1 2.3E-06 52.7 14.2 142 100-259 117-280 (299)
126 TIGR00262 trpA tryptophan synt 96.2 0.65 1.4E-05 46.4 19.5 173 102-316 30-233 (256)
127 PRK12331 oxaloacetate decarbox 96.2 0.32 6.9E-06 52.5 18.2 289 100-421 30-344 (448)
128 PRK00208 thiG thiazole synthas 96.2 0.078 1.7E-06 53.1 12.5 173 19-219 53-228 (250)
129 cd00564 TMP_TenI Thiamine mono 96.2 0.12 2.6E-06 47.2 13.0 130 136-315 42-183 (196)
130 cd02810 DHOD_DHPD_FMN Dihydroo 96.1 0.11 2.4E-06 51.6 13.3 82 101-187 116-198 (289)
131 cd00946 FBP_aldolase_IIA Class 96.0 2.5 5.5E-05 44.4 23.3 227 80-327 7-292 (345)
132 cd04728 ThiG Thiazole synthase 96.0 0.11 2.4E-06 52.0 12.6 173 19-219 53-228 (248)
133 PRK09197 fructose-bisphosphate 96.0 1.7 3.8E-05 45.7 21.8 227 80-327 12-296 (350)
134 TIGR00222 panB 3-methyl-2-oxob 96.0 0.28 6E-06 49.6 15.4 147 170-324 27-193 (263)
135 PRK14041 oxaloacetate decarbox 96.0 0.45 9.7E-06 51.7 18.0 246 100-383 29-296 (467)
136 PRK07226 fructose-bisphosphate 95.9 2.1 4.5E-05 42.8 22.4 166 150-331 73-253 (267)
137 cd04734 OYE_like_3_FMN Old yel 95.9 0.84 1.8E-05 47.3 18.9 151 167-332 143-332 (343)
138 PRK12581 oxaloacetate decarbox 95.9 1.1 2.3E-05 48.9 20.3 254 101-382 40-308 (468)
139 PRK12330 oxaloacetate decarbox 95.8 1.2 2.6E-05 48.9 20.7 258 80-366 11-285 (499)
140 PRK14042 pyruvate carboxylase 95.8 1.3 2.9E-05 49.5 21.4 250 101-382 31-296 (596)
141 PRK08318 dihydropyrimidine deh 95.8 0.35 7.7E-06 51.1 16.3 190 125-328 70-300 (420)
142 cd03174 DRE_TIM_metallolyase D 95.8 0.2 4.3E-06 48.7 13.4 208 102-330 25-244 (265)
143 TIGR00737 nifR3_yhdG putative 95.8 0.19 4.2E-06 51.2 13.8 160 92-274 67-238 (319)
144 PF02548 Pantoate_transf: Keto 95.8 0.075 1.6E-06 53.6 10.6 107 169-282 27-136 (261)
145 PRK10558 alpha-dehydro-beta-de 95.8 1.6 3.5E-05 43.7 20.0 88 79-184 8-97 (256)
146 COG5564 Predicted TIM-barrel e 95.8 0.07 1.5E-06 52.8 10.0 164 78-261 10-184 (276)
147 cd02911 arch_FMN Archeal FMN-b 95.8 0.62 1.3E-05 45.9 16.8 197 93-311 7-221 (233)
148 PLN02591 tryptophan synthase 95.8 0.83 1.8E-05 45.7 17.7 173 103-315 23-223 (250)
149 PRK00043 thiE thiamine-phospha 95.7 1.3 2.8E-05 41.6 18.1 153 104-315 29-193 (212)
150 PRK08318 dihydropyrimidine deh 95.7 0.2 4.4E-06 52.9 13.7 160 101-274 118-299 (420)
151 PRK04302 triosephosphate isome 95.6 0.31 6.7E-06 47.2 13.8 140 146-316 52-208 (223)
152 cd04741 DHOD_1A_like Dihydroor 95.6 3.2 6.8E-05 42.1 22.2 117 125-259 66-192 (294)
153 cd04733 OYE_like_2_FMN Old yel 95.5 0.45 9.7E-06 49.0 15.2 139 166-314 150-326 (338)
154 PRK01130 N-acetylmannosamine-6 95.5 1.1 2.4E-05 43.0 16.8 141 140-315 46-207 (221)
155 cd06557 KPHMT-like Ketopantoat 95.4 0.075 1.6E-06 53.3 9.1 137 170-313 24-181 (254)
156 PRK12999 pyruvate carboxylase; 95.4 0.82 1.8E-05 54.7 19.0 251 102-382 561-833 (1146)
157 TIGR01037 pyrD_sub1_fam dihydr 95.4 0.57 1.2E-05 47.1 15.2 79 102-186 109-190 (300)
158 PRK09282 pyruvate carboxylase 95.4 0.77 1.7E-05 51.3 17.5 270 81-385 11-299 (592)
159 TIGR01520 FruBisAldo_II_A fruc 95.4 4.5 9.8E-05 42.8 22.1 231 78-327 12-304 (357)
160 PRK01033 imidazole glycerol ph 95.3 0.6 1.3E-05 46.4 15.0 178 98-315 31-231 (258)
161 PF03932 CutC: CutC family; I 95.3 2.8 6E-05 40.9 18.9 177 94-307 5-196 (201)
162 cd04730 NPD_like 2-Nitropropan 95.2 0.67 1.4E-05 44.4 14.6 171 93-317 10-192 (236)
163 PRK00311 panB 3-methyl-2-oxobu 95.1 0.097 2.1E-06 52.8 8.8 136 170-312 27-183 (264)
164 cd04722 TIM_phosphate_binding 95.1 1.5 3.3E-05 39.2 15.5 171 101-310 17-199 (200)
165 cd04728 ThiG Thiazole synthase 95.0 1.1 2.3E-05 45.2 15.3 129 160-315 71-209 (248)
166 TIGR00126 deoC deoxyribose-pho 95.0 0.56 1.2E-05 45.9 13.2 142 150-307 55-201 (211)
167 PRK05692 hydroxymethylglutaryl 94.9 2.2 4.7E-05 43.4 17.8 134 102-257 85-228 (287)
168 PF01791 DeoC: DeoC/LacD famil 94.9 0.53 1.1E-05 45.8 13.0 145 104-276 27-189 (236)
169 cd02931 ER_like_FMN Enoate red 94.9 0.75 1.6E-05 48.4 15.0 150 169-333 154-353 (382)
170 PRK14040 oxaloacetate decarbox 94.9 2.8 6.1E-05 47.0 20.0 250 101-383 32-298 (593)
171 PLN02858 fructose-bisphosphate 94.8 3.3 7.2E-05 50.7 21.9 212 81-323 1106-1344(1378)
172 TIGR03151 enACPred_II putative 94.8 1.8 3.9E-05 44.3 17.1 183 80-317 3-197 (307)
173 TIGR00736 nifR3_rel_arch TIM-b 94.8 0.39 8.4E-06 47.6 11.8 101 134-259 119-219 (231)
174 TIGR01108 oadA oxaloacetate de 94.7 1.9 4.2E-05 48.1 18.3 252 100-383 25-292 (582)
175 cd02932 OYE_YqiM_FMN Old yello 94.7 1.1 2.3E-05 46.1 15.3 86 100-186 158-262 (336)
176 cd04729 NanE N-acetylmannosami 94.6 1 2.3E-05 43.2 14.1 144 141-316 51-212 (219)
177 PF04131 NanE: Putative N-acet 94.6 0.45 9.7E-06 46.1 11.3 159 101-316 4-179 (192)
178 CHL00200 trpA tryptophan synth 94.6 2.5 5.4E-05 42.6 17.1 176 102-316 35-237 (263)
179 cd04733 OYE_like_2_FMN Old yel 94.6 2.1 4.6E-05 44.1 17.0 88 100-188 153-259 (338)
180 TIGR03239 GarL 2-dehydro-3-deo 94.6 5.6 0.00012 39.7 20.3 87 80-184 2-90 (249)
181 cd06556 ICL_KPHMT Members of t 94.5 0.15 3.2E-06 50.7 8.2 87 171-262 25-111 (240)
182 PF00682 HMGL-like: HMGL-like 94.5 0.43 9.3E-06 46.0 11.2 152 102-274 20-174 (237)
183 COG2022 ThiG Uncharacterized e 94.4 0.2 4.2E-06 50.1 8.6 173 19-219 60-235 (262)
184 PF05690 ThiG: Thiazole biosyn 94.4 1.4 3E-05 44.2 14.4 141 160-326 71-225 (247)
185 cd02803 OYE_like_FMN_family Ol 94.3 2.3 5E-05 43.0 16.4 159 100-271 145-324 (327)
186 cd02809 alpha_hydroxyacid_oxid 94.2 0.25 5.5E-06 49.9 9.3 91 79-184 162-255 (299)
187 PRK15452 putative protease; Pr 94.2 3.3 7.2E-05 44.8 18.1 146 96-276 10-157 (443)
188 cd02933 OYE_like_FMN Old yello 94.2 1.4 3E-05 45.7 14.8 150 167-332 154-331 (338)
189 cd04723 HisA_HisF Phosphoribos 94.2 2.5 5.4E-05 41.4 15.8 171 98-315 36-223 (233)
190 TIGR01163 rpe ribulose-phospha 94.2 1.9 4.1E-05 40.4 14.5 170 101-315 16-198 (210)
191 PRK11572 copper homeostasis pr 94.2 7.1 0.00015 39.4 19.3 177 94-308 6-196 (248)
192 PRK05848 nicotinate-nucleotide 94.2 0.98 2.1E-05 45.9 13.3 145 78-262 107-259 (273)
193 cd00959 DeoC 2-deoxyribose-5-p 94.1 1.9 4.2E-05 41.2 14.5 139 153-307 57-200 (203)
194 cd03316 MR_like Mandelate race 94.0 1.1 2.4E-05 45.9 13.6 114 150-281 126-244 (357)
195 TIGR00693 thiE thiamine-phosph 94.0 2.4 5.2E-05 39.6 14.8 132 135-315 42-185 (196)
196 PRK13111 trpA tryptophan synth 94.0 3.7 8E-05 41.3 16.9 175 102-318 32-236 (258)
197 cd04739 DHOD_like Dihydroorota 94.0 1.7 3.7E-05 44.7 14.8 154 100-274 116-283 (325)
198 TIGR01740 pyrF orotidine 5'-ph 93.9 4.2 9.1E-05 39.2 16.7 147 141-315 41-201 (213)
199 PRK00208 thiG thiazole synthas 93.9 2.7 5.8E-05 42.4 15.5 129 160-315 71-209 (250)
200 PRK06852 aldolase; Validated 93.9 4.5 9.7E-05 41.9 17.6 203 93-331 55-289 (304)
201 cd02911 arch_FMN Archeal FMN-b 93.8 0.96 2.1E-05 44.6 12.2 97 134-260 124-220 (233)
202 cd03315 MLE_like Muconate lact 93.8 4.4 9.6E-05 39.9 16.9 133 151-314 75-214 (265)
203 PRK09250 fructose-bisphosphate 93.8 4.7 0.0001 42.5 17.7 145 95-271 89-248 (348)
204 TIGR01305 GMP_reduct_1 guanosi 93.7 0.35 7.5E-06 50.6 9.3 91 88-185 149-241 (343)
205 PRK06512 thiamine-phosphate py 93.7 2.9 6.3E-05 40.9 15.3 130 136-314 57-196 (221)
206 PRK09490 metH B12-dependent me 93.7 0.68 1.5E-05 55.7 12.8 128 134-275 253-423 (1229)
207 TIGR01304 IMP_DH_rel_2 IMP deh 93.7 1.9 4.1E-05 45.7 14.8 135 100-261 146-285 (369)
208 cd04735 OYE_like_4_FMN Old yel 93.7 2.5 5.4E-05 43.9 15.5 155 167-332 146-330 (353)
209 PRK07695 transcriptional regul 93.6 5.3 0.00011 37.8 16.5 132 133-315 38-182 (201)
210 COG0826 Collagenase and relate 93.6 4.6 0.0001 42.4 17.4 145 98-276 15-160 (347)
211 KOG2335 tRNA-dihydrouridine sy 93.6 1.6 3.5E-05 46.0 13.9 208 76-313 7-236 (358)
212 PRK05286 dihydroorotate dehydr 93.6 0.71 1.5E-05 47.9 11.4 141 101-259 159-317 (344)
213 PRK14017 galactonate dehydrata 93.6 2.1 4.6E-05 44.7 14.9 133 160-312 121-260 (382)
214 cd07937 DRE_TIM_PC_TC_5S Pyruv 93.5 3.1 6.6E-05 41.8 15.5 207 101-330 26-246 (275)
215 cd03321 mandelate_racemase Man 93.5 1.5 3.2E-05 45.4 13.6 135 151-315 131-272 (355)
216 cd00381 IMPDH IMPDH: The catal 93.5 5.4 0.00012 41.2 17.5 171 93-313 42-229 (325)
217 PRK05692 hydroxymethylglutaryl 93.5 3.6 7.8E-05 41.8 16.0 204 102-330 32-259 (287)
218 TIGR02311 HpaI 2,4-dihydroxyhe 93.5 8.7 0.00019 38.2 18.4 87 80-184 2-90 (249)
219 PRK08649 inosine 5-monophospha 93.4 1.3 2.9E-05 46.7 13.2 71 99-184 144-214 (368)
220 COG2513 PrpB PEP phosphonomuta 93.4 2 4.4E-05 44.1 13.9 132 100-263 97-237 (289)
221 PF04131 NanE: Putative N-acet 93.4 0.85 1.8E-05 44.2 10.7 91 77-184 81-172 (192)
222 PRK07807 inosine 5-monophospha 93.4 0.34 7.5E-06 52.7 9.0 98 80-184 258-358 (479)
223 PRK07565 dihydroorotate dehydr 93.4 2.6 5.6E-05 43.4 14.9 81 100-187 118-199 (334)
224 PRK13587 1-(5-phosphoribosyl)- 93.3 3.4 7.3E-05 40.7 15.1 174 100-315 35-226 (234)
225 PRK10415 tRNA-dihydrouridine s 93.3 1.7 3.7E-05 44.7 13.5 152 101-273 82-239 (321)
226 PLN02746 hydroxymethylglutaryl 93.3 7.4 0.00016 40.9 18.2 138 97-257 122-270 (347)
227 TIGR01769 GGGP geranylgeranylg 93.3 1.6 3.5E-05 42.5 12.6 172 102-310 17-205 (205)
228 PRK08195 4-hyroxy-2-oxovalerat 93.2 2.7 5.8E-05 43.8 14.9 145 102-274 31-181 (337)
229 COG0826 Collagenase and relate 93.2 1.9 4.1E-05 45.2 13.8 143 169-325 17-159 (347)
230 cd04741 DHOD_1A_like Dihydroor 93.2 1.5 3.3E-05 44.4 12.8 149 109-274 119-289 (294)
231 PRK11858 aksA trans-homoaconit 93.2 10 0.00023 39.9 19.4 156 79-257 56-217 (378)
232 COG0434 SgcQ Predicted TIM-bar 93.1 1.8 3.9E-05 43.6 12.7 161 101-283 39-211 (263)
233 COG0413 PanB Ketopantoate hydr 93.0 0.73 1.6E-05 46.6 10.0 101 169-274 26-129 (268)
234 TIGR01302 IMP_dehydrog inosine 93.0 0.31 6.6E-06 52.4 7.9 125 167-310 163-293 (450)
235 TIGR02082 metH 5-methyltetrahy 93.0 1.2 2.7E-05 53.4 13.4 128 134-275 237-407 (1178)
236 PF03932 CutC: CutC family; I 92.9 0.5 1.1E-05 46.0 8.5 129 170-312 12-149 (201)
237 PF03437 BtpA: BtpA family; I 92.9 2.8 6E-05 42.3 14.0 161 101-283 34-206 (254)
238 PRK13125 trpA tryptophan synth 92.9 5.9 0.00013 39.0 16.1 143 140-315 64-219 (244)
239 cd04729 NanE N-acetylmannosami 92.8 1.1 2.3E-05 43.1 10.6 91 81-184 115-205 (219)
240 PRK11613 folP dihydropteroate 92.7 6 0.00013 40.5 16.2 104 161-282 34-138 (282)
241 cd00381 IMPDH IMPDH: The catal 92.7 1 2.3E-05 46.4 10.9 99 79-184 124-225 (325)
242 PF01729 QRPTase_C: Quinolinat 92.7 1.2 2.5E-05 42.2 10.3 145 78-262 5-157 (169)
243 PRK13523 NADPH dehydrogenase N 92.7 6.8 0.00015 40.8 16.9 135 168-314 145-309 (337)
244 PRK01130 N-acetylmannosamine-6 92.6 1.1 2.3E-05 43.1 10.3 95 78-185 107-202 (221)
245 PF02581 TMP-TENI: Thiamine mo 92.6 5.7 0.00012 37.1 14.9 125 135-309 41-176 (180)
246 PRK07028 bifunctional hexulose 92.6 14 0.0003 39.4 19.5 143 138-316 44-196 (430)
247 PRK02615 thiamine-phosphate py 92.6 4.6 0.0001 42.4 15.6 132 134-315 185-327 (347)
248 PRK11572 copper homeostasis pr 92.5 2.2 4.8E-05 42.9 12.6 129 171-313 14-151 (248)
249 cd04724 Tryptophan_synthase_al 92.5 12 0.00026 36.9 18.2 175 102-317 20-222 (242)
250 cd03329 MR_like_4 Mandelate ra 92.4 4.7 0.0001 41.9 15.5 101 161-281 141-244 (368)
251 PRK08255 salicylyl-CoA 5-hydro 92.4 2.5 5.4E-05 48.4 14.5 139 167-315 553-722 (765)
252 PRK13523 NADPH dehydrogenase N 92.4 6.1 0.00013 41.1 16.2 156 100-275 146-322 (337)
253 cd04824 eu_ALAD_PBGS_cysteine_ 92.4 4.6 0.0001 42.0 14.9 171 92-285 41-271 (320)
254 TIGR01306 GMP_reduct_2 guanosi 92.3 0.63 1.4E-05 48.3 8.8 85 88-185 136-227 (321)
255 PLN02495 oxidoreductase, actin 92.3 4.4 9.6E-05 43.1 15.2 119 125-259 84-213 (385)
256 PLN02274 inosine-5'-monophosph 92.3 0.61 1.3E-05 51.1 9.1 94 79-184 278-379 (505)
257 TIGR02151 IPP_isom_2 isopenten 92.3 5.2 0.00011 41.4 15.4 78 101-186 133-211 (333)
258 COG2022 ThiG Uncharacterized e 92.2 6.8 0.00015 39.5 15.3 128 160-313 78-214 (262)
259 cd04725 OMP_decarboxylase_like 92.2 8 0.00017 37.5 15.8 146 141-315 41-205 (216)
260 TIGR01302 IMP_dehydrog inosine 92.2 0.76 1.6E-05 49.4 9.6 98 80-184 255-355 (450)
261 cd03325 D-galactonate_dehydrat 92.2 3.7 8.1E-05 42.4 14.3 116 151-281 113-231 (352)
262 PF00478 IMPDH: IMP dehydrogen 92.2 2.8 6.1E-05 44.2 13.4 132 150-312 37-179 (352)
263 TIGR01303 IMP_DH_rel_1 IMP deh 92.2 0.74 1.6E-05 50.1 9.5 99 79-184 255-356 (475)
264 cd04736 MDH_FMN Mandelate dehy 92.1 0.6 1.3E-05 49.2 8.4 93 77-186 227-319 (361)
265 TIGR03151 enACPred_II putative 92.1 0.81 1.8E-05 46.9 9.2 90 79-184 100-189 (307)
266 cd07945 DRE_TIM_CMS Leptospira 92.0 6.3 0.00014 39.9 15.4 133 101-257 79-220 (280)
267 cd04737 LOX_like_FMN L-Lactate 91.9 0.83 1.8E-05 47.9 9.2 84 88-186 221-306 (351)
268 cd07948 DRE_TIM_HCS Saccharomy 91.9 10 0.00022 38.0 16.6 143 91-257 66-213 (262)
269 PF13714 PEP_mutase: Phosphoen 91.9 1.6 3.5E-05 43.3 10.8 127 100-262 89-221 (238)
270 PF01207 Dus: Dihydrouridine s 91.9 1.1 2.4E-05 45.8 9.8 147 92-259 58-212 (309)
271 TIGR00035 asp_race aspartate r 91.8 1.6 3.5E-05 42.4 10.6 101 201-310 12-123 (229)
272 TIGR00640 acid_CoA_mut_C methy 91.8 0.7 1.5E-05 41.8 7.5 82 239-325 42-127 (132)
273 TIGR02127 pyrF_sub2 orotidine 91.8 6.2 0.00013 39.8 14.9 109 149-278 85-211 (261)
274 cd02930 DCR_FMN 2,4-dienoyl-Co 91.8 6.7 0.00015 40.7 15.6 86 100-185 141-244 (353)
275 cd04747 OYE_like_5_FMN Old yel 91.8 3.9 8.6E-05 43.0 14.0 153 167-333 146-346 (361)
276 cd07944 DRE_TIM_HOA_like 4-hyd 91.7 14 0.0003 37.1 17.2 131 95-257 81-212 (266)
277 TIGR02660 nifV_homocitr homoci 91.7 16 0.00034 38.3 18.3 153 79-257 53-214 (365)
278 KOG1260 Isocitrate lyase [Ener 91.7 0.27 5.9E-06 52.8 5.3 90 239-331 336-440 (492)
279 cd03327 MR_like_2 Mandelate ra 91.6 2.7 5.9E-05 43.3 12.5 116 150-281 108-226 (341)
280 PF01729 QRPTase_C: Quinolinat 91.6 0.58 1.3E-05 44.2 6.9 89 211-313 66-158 (169)
281 PRK09485 mmuM homocysteine met 91.5 1.6 3.6E-05 44.4 10.7 43 244-286 144-190 (304)
282 PRK08385 nicotinate-nucleotide 91.5 1.6 3.5E-05 44.4 10.6 90 211-312 169-261 (278)
283 TIGR00259 thylakoid_BtpA membr 91.5 2.2 4.7E-05 43.1 11.3 159 101-282 33-205 (257)
284 PRK06843 inosine 5-monophospha 91.5 1.2 2.5E-05 47.8 9.9 99 79-184 183-284 (404)
285 PRK06096 molybdenum transport 91.5 0.88 1.9E-05 46.5 8.6 125 167-311 136-265 (284)
286 cd04738 DHOD_2_like Dihydrooro 91.4 3.6 7.8E-05 42.3 13.1 155 101-273 150-325 (327)
287 PLN02746 hydroxymethylglutaryl 91.4 3 6.5E-05 43.8 12.6 207 102-329 74-300 (347)
288 PRK06559 nicotinate-nucleotide 91.4 1.1 2.4E-05 46.0 9.2 74 224-311 197-270 (290)
289 PTZ00314 inosine-5'-monophosph 91.3 0.99 2.1E-05 49.3 9.4 94 79-184 271-372 (495)
290 cd03332 LMO_FMN L-Lactate 2-mo 91.3 1.1 2.5E-05 47.5 9.5 92 78-184 245-336 (383)
291 PRK11840 bifunctional sulfur c 91.3 3.6 7.9E-05 43.0 12.9 173 19-219 127-302 (326)
292 cd02811 IDI-2_FMN Isopentenyl- 91.2 6.3 0.00014 40.7 14.7 78 101-186 132-210 (326)
293 PRK10550 tRNA-dihydrouridine s 91.2 5.2 0.00011 41.2 14.0 151 101-271 80-237 (312)
294 TIGR03128 RuMP_HxlA 3-hexulose 91.2 6.8 0.00015 36.9 13.9 142 141-316 42-192 (206)
295 COG0157 NadC Nicotinate-nucleo 91.2 1.3 2.7E-05 45.3 9.3 65 243-311 198-263 (280)
296 cd03323 D-glucarate_dehydratas 91.1 5.6 0.00012 42.1 14.5 98 163-283 168-267 (395)
297 cd04724 Tryptophan_synthase_al 91.1 3.9 8.5E-05 40.3 12.5 104 159-273 8-123 (242)
298 PRK08227 autoinducer 2 aldolas 91.0 6.3 0.00014 40.0 14.1 163 150-331 74-248 (264)
299 cd03319 L-Ala-DL-Glu_epimerase 91.0 6.9 0.00015 39.6 14.5 131 151-313 124-261 (316)
300 COG3836 HpcH 2,4-dihydroxyhept 91.0 16 0.00034 37.0 16.4 203 80-326 7-254 (255)
301 cd07943 DRE_TIM_HOA 4-hydroxy- 91.0 11 0.00024 37.4 15.6 146 102-275 28-179 (263)
302 PF00478 IMPDH: IMP dehydrogen 90.7 0.8 1.7E-05 48.2 7.7 83 90-184 151-239 (352)
303 COG0352 ThiE Thiamine monophos 90.7 15 0.00032 36.2 15.8 146 150-315 7-191 (211)
304 cd07941 DRE_TIM_LeuA3 Desulfob 90.6 7.5 0.00016 39.0 14.3 155 169-329 82-248 (273)
305 COG2876 AroA 3-deoxy-D-arabino 90.6 1.3 2.9E-05 45.1 8.7 134 78-213 98-276 (286)
306 PRK11858 aksA trans-homoaconit 90.6 5.1 0.00011 42.2 13.5 267 102-409 32-309 (378)
307 TIGR01496 DHPS dihydropteroate 90.5 12 0.00026 37.4 15.6 102 163-282 21-123 (257)
308 TIGR03247 glucar-dehydr glucar 90.5 3.6 7.9E-05 44.3 12.6 98 163-283 180-285 (441)
309 PRK09389 (R)-citramalate synth 90.5 5.7 0.00012 43.5 14.2 200 102-329 30-239 (488)
310 TIGR01303 IMP_DH_rel_1 IMP deh 90.5 5.2 0.00011 43.7 13.8 65 103-187 231-296 (475)
311 cd03328 MR_like_3 Mandelate ra 90.4 5.4 0.00012 41.3 13.4 110 150-282 125-240 (352)
312 TIGR02708 L_lactate_ox L-lacta 90.4 1.8 3.9E-05 45.8 10.0 91 80-185 219-312 (367)
313 TIGR03217 4OH_2_O_val_ald 4-hy 90.3 12 0.00026 38.9 15.8 145 102-275 30-181 (333)
314 cd03326 MR_like_1 Mandelate ra 90.3 4.8 0.0001 42.5 13.1 98 163-281 160-260 (385)
315 cd00331 IGPS Indole-3-glycerol 90.3 0.93 2E-05 43.3 7.2 100 224-330 10-119 (217)
316 PRK08195 4-hyroxy-2-oxovalerat 90.3 12 0.00026 38.9 15.8 132 93-256 85-217 (337)
317 PRK15452 putative protease; Pr 90.2 7.1 0.00015 42.3 14.5 140 169-322 14-153 (443)
318 TIGR00742 yjbN tRNA dihydrouri 90.2 11 0.00023 39.1 15.2 159 101-274 72-239 (318)
319 cd07948 DRE_TIM_HCS Saccharomy 90.1 8.7 0.00019 38.6 14.1 148 103-275 29-179 (262)
320 cd04730 NPD_like 2-Nitropropan 90.1 2.5 5.3E-05 40.5 9.9 95 81-188 94-188 (236)
321 PRK07107 inosine 5-monophospha 90.1 1.2 2.7E-05 48.7 8.7 88 91-184 287-380 (502)
322 PRK06978 nicotinate-nucleotide 90.1 1.5 3.3E-05 45.1 8.8 64 243-312 215-279 (294)
323 PLN02334 ribulose-phosphate 3- 90.0 4.3 9.4E-05 39.4 11.6 67 245-316 130-208 (229)
324 PRK05848 nicotinate-nucleotide 90.0 2 4.3E-05 43.7 9.5 77 224-312 182-259 (273)
325 PRK10605 N-ethylmaleimide redu 89.9 9 0.0002 40.2 14.6 149 100-274 163-337 (362)
326 TIGR01334 modD putative molybd 89.9 1.5 3.3E-05 44.7 8.6 66 243-311 198-264 (277)
327 PRK15052 D-tagatose-1,6-bispho 89.9 33 0.00071 37.2 23.4 207 104-323 33-294 (421)
328 PRK05458 guanosine 5'-monophos 89.9 1.5 3.3E-05 45.6 8.8 85 88-185 139-230 (326)
329 TIGR03217 4OH_2_O_val_ald 4-hy 89.8 14 0.00031 38.4 15.9 132 92-257 83-217 (333)
330 PLN02489 homocysteine S-methyl 89.8 3.6 7.7E-05 42.8 11.4 45 242-286 169-217 (335)
331 PLN02535 glycolate oxidase 89.7 1.6 3.5E-05 46.1 9.0 95 76-187 213-309 (364)
332 PRK10128 2-keto-3-deoxy-L-rham 89.7 3.1 6.7E-05 42.1 10.7 83 170-276 31-113 (267)
333 cd00564 TMP_TenI Thiamine mono 89.7 3.3 7.2E-05 37.7 10.1 96 78-188 85-181 (196)
334 PRK15458 tagatose 6-phosphate 89.6 34 0.00075 37.1 25.5 207 104-323 36-299 (426)
335 TIGR03239 GarL 2-dehydro-3-deo 89.6 2.3 4.9E-05 42.5 9.5 83 170-276 25-107 (249)
336 TIGR02660 nifV_homocitr homoci 89.5 12 0.00026 39.2 15.2 267 102-409 29-306 (365)
337 TIGR02320 PEP_mutase phosphoen 89.5 26 0.00056 35.9 17.2 85 102-186 98-190 (285)
338 PRK06543 nicotinate-nucleotide 89.4 1.8 4E-05 44.2 8.8 64 243-311 203-266 (281)
339 PRK00125 pyrF orotidine 5'-pho 89.4 14 0.00031 37.7 15.1 169 103-304 45-235 (278)
340 PLN03228 methylthioalkylmalate 89.4 5.5 0.00012 43.9 13.0 274 102-409 112-412 (503)
341 PRK10558 alpha-dehydro-beta-de 89.2 3.2 7E-05 41.6 10.3 84 169-276 31-114 (256)
342 PRK05096 guanosine 5'-monophos 89.2 2 4.3E-05 45.2 9.0 84 90-185 153-242 (346)
343 TIGR02311 HpaI 2,4-dihydroxyhe 89.1 3.2 6.8E-05 41.3 10.1 84 169-276 24-107 (249)
344 TIGR03849 arch_ComA phosphosul 89.1 2.8 6E-05 42.0 9.6 120 138-276 42-184 (237)
345 COG3010 NanE Putative N-acetyl 89.0 8.3 0.00018 38.3 12.5 110 79-215 117-226 (229)
346 PF03328 HpcH_HpaI: HpcH/HpaI 89.0 4.7 0.0001 38.8 10.9 132 169-315 12-155 (221)
347 PLN02274 inosine-5'-monophosph 89.0 0.68 1.5E-05 50.7 5.8 65 240-310 247-317 (505)
348 cd02922 FCB2_FMN Flavocytochro 88.9 2.8 6.1E-05 43.8 10.0 94 80-185 204-300 (344)
349 cd02933 OYE_like_FMN Old yello 88.9 22 0.00047 37.0 16.4 151 100-273 156-329 (338)
350 PRK11197 lldD L-lactate dehydr 88.8 2.6 5.6E-05 44.8 9.7 82 88-184 245-328 (381)
351 TIGR01334 modD putative molybd 88.6 8.4 0.00018 39.3 12.9 144 80-263 111-266 (277)
352 PRK02506 dihydroorotate dehydr 88.6 7 0.00015 40.0 12.5 158 100-274 109-287 (310)
353 PRK08649 inosine 5-monophospha 88.5 2.4 5.1E-05 44.8 9.2 99 78-184 176-284 (368)
354 PRK00507 deoxyribose-phosphate 88.4 20 0.00043 35.3 14.9 143 150-309 59-207 (221)
355 PRK05437 isopentenyl pyrophosp 88.4 13 0.00029 38.8 14.5 83 96-186 134-218 (352)
356 TIGR02090 LEU1_arch isopropylm 88.3 8.4 0.00018 40.4 13.0 200 102-329 28-237 (363)
357 CHL00162 thiG thiamin biosynth 88.2 32 0.0007 35.1 16.4 128 160-313 79-221 (267)
358 PRK07896 nicotinate-nucleotide 88.2 2.7 5.9E-05 43.1 9.1 65 245-312 211-276 (289)
359 COG0269 SgbH 3-hexulose-6-phos 88.2 22 0.00048 35.3 14.9 144 140-316 45-198 (217)
360 TIGR01235 pyruv_carbox pyruvat 88.1 13 0.00028 44.9 15.9 204 153-381 609-830 (1143)
361 COG1794 RacX Aspartate racemas 88.1 2.3 5E-05 42.3 8.2 109 192-309 3-122 (230)
362 cd03322 rpsA The starvation se 88.0 17 0.00036 37.8 15.0 91 163-282 126-219 (361)
363 PRK02714 O-succinylbenzoate sy 88.0 10 0.00022 38.9 13.2 111 150-283 109-223 (320)
364 PRK05567 inosine 5'-monophosph 88.0 2.7 5.9E-05 45.6 9.5 88 89-184 270-359 (486)
365 TIGR02708 L_lactate_ox L-lacta 87.9 4.3 9.2E-05 43.0 10.6 94 141-260 219-312 (367)
366 TIGR01304 IMP_DH_rel_2 IMP deh 87.9 2.9 6.3E-05 44.3 9.4 97 80-184 179-283 (369)
367 PF00490 ALAD: Delta-aminolevu 87.9 8.4 0.00018 40.2 12.4 170 92-285 47-275 (324)
368 PRK05458 guanosine 5'-monophos 87.8 0.83 1.8E-05 47.5 5.2 67 240-312 96-170 (326)
369 PF02219 MTHFR: Methylenetetra 87.8 32 0.0007 34.6 17.8 202 80-302 1-219 (287)
370 PF00290 Trp_syntA: Tryptophan 87.8 3.6 7.8E-05 41.6 9.6 196 81-319 1-235 (259)
371 PRK05105 O-succinylbenzoate sy 87.8 6.1 0.00013 40.6 11.5 101 160-282 112-214 (322)
372 PRK06106 nicotinate-nucleotide 87.7 2.3 4.9E-05 43.5 8.2 61 245-311 206-267 (281)
373 COG1830 FbaB DhnA-type fructos 87.7 11 0.00023 38.5 12.7 174 103-314 50-241 (265)
374 cd04726 KGPDC_HPS 3-Keto-L-gul 87.7 22 0.00048 33.1 14.3 140 139-315 41-191 (202)
375 cd00452 KDPG_aldolase KDPG and 87.6 6.1 0.00013 37.2 10.6 67 243-314 107-175 (190)
376 PRK05567 inosine 5'-monophosph 87.6 12 0.00025 40.8 14.0 127 99-262 230-362 (486)
377 cd07944 DRE_TIM_HOA_like 4-hyd 87.6 16 0.00035 36.6 14.1 148 102-275 26-176 (266)
378 cd03324 rTSbeta_L-fuconate_deh 87.4 7.3 0.00016 41.7 12.2 98 163-281 196-298 (415)
379 cd04732 HisA HisA. Phosphorib 87.4 6.2 0.00014 37.8 10.7 122 166-310 30-166 (234)
380 PRK05742 nicotinate-nucleotide 87.4 4.2 9.2E-05 41.4 9.9 76 222-312 187-263 (277)
381 PLN02495 oxidoreductase, actin 87.3 15 0.00033 39.2 14.3 215 93-332 120-364 (385)
382 PRK05581 ribulose-phosphate 3- 87.3 13 0.00028 35.2 12.7 27 288-315 177-203 (220)
383 PLN02716 nicotinate-nucleotide 87.3 4.1 8.9E-05 42.2 9.8 62 245-311 215-291 (308)
384 cd04734 OYE_like_3_FMN Old yel 87.0 24 0.00051 36.7 15.3 158 100-273 145-330 (343)
385 PRK12858 tagatose 1,6-diphosph 86.9 19 0.00041 37.8 14.6 149 96-259 106-275 (340)
386 PRK11815 tRNA-dihydrouridine s 86.9 9.8 0.00021 39.4 12.4 88 100-187 81-173 (333)
387 PRK07534 methionine synthase I 86.8 43 0.00093 35.0 18.3 147 107-273 56-225 (336)
388 cd02929 TMADH_HD_FMN Trimethyl 86.8 16 0.00035 38.4 14.1 151 167-333 152-337 (370)
389 CHL00200 trpA tryptophan synth 86.8 19 0.00041 36.3 14.1 108 152-272 16-137 (263)
390 PRK09016 quinolinate phosphori 86.7 3.1 6.8E-05 42.8 8.6 63 244-311 219-281 (296)
391 cd02812 PcrB_like PcrB_like pr 86.7 24 0.00052 34.9 14.4 184 98-316 14-210 (219)
392 PRK13753 dihydropteroate synth 86.6 15 0.00032 37.6 13.3 104 161-283 21-125 (279)
393 PRK00915 2-isopropylmalate syn 86.4 11 0.00024 41.3 13.2 108 133-257 113-225 (513)
394 PRK03512 thiamine-phosphate py 86.4 34 0.00073 33.3 15.2 133 133-314 43-190 (211)
395 PLN02979 glycolate oxidase 86.3 3.7 8.1E-05 43.5 9.0 94 76-184 213-306 (366)
396 cd02931 ER_like_FMN Enoate red 86.2 25 0.00054 37.1 15.2 157 100-273 154-350 (382)
397 PTZ00314 inosine-5'-monophosph 86.2 8.6 0.00019 42.2 12.1 117 166-313 241-376 (495)
398 COG4948 L-alanine-DL-glutamate 86.1 15 0.00033 38.1 13.4 120 163-307 143-266 (372)
399 PF03060 NMO: Nitronate monoox 86.1 3.4 7.3E-05 42.6 8.5 93 78-184 126-218 (330)
400 COG0821 gcpE 1-hydroxy-2-methy 86.0 21 0.00045 37.8 14.0 146 104-289 44-206 (361)
401 TIGR00612 ispG_gcpE 1-hydroxy- 85.9 21 0.00046 37.6 14.1 146 103-288 41-203 (346)
402 PRK13957 indole-3-glycerol-pho 85.9 42 0.0009 33.9 16.6 169 97-316 61-236 (247)
403 PF01070 FMN_dh: FMN-dependent 85.9 5.2 0.00011 42.0 9.9 94 78-186 217-310 (356)
404 PRK10605 N-ethylmaleimide redu 85.8 28 0.00061 36.5 15.3 147 167-332 161-338 (362)
405 PRK00915 2-isopropylmalate syn 85.8 19 0.0004 39.7 14.5 273 102-409 32-320 (513)
406 cd04737 LOX_like_FMN L-Lactate 85.8 4.5 9.7E-05 42.6 9.3 100 244-357 233-346 (351)
407 PRK08999 hypothetical protein; 85.7 13 0.00027 37.5 12.3 129 128-307 166-305 (312)
408 PF00977 His_biosynth: Histidi 85.7 14 0.0003 36.1 12.2 175 97-314 29-224 (229)
409 cd02922 FCB2_FMN Flavocytochro 85.5 20 0.00044 37.5 14.0 101 243-357 224-341 (344)
410 PRK00366 ispG 4-hydroxy-3-meth 85.5 26 0.00056 37.2 14.6 147 103-288 49-212 (360)
411 TIGR00973 leuA_bact 2-isopropy 85.4 14 0.00031 40.4 13.3 108 133-257 110-222 (494)
412 PRK13384 delta-aminolevulinic 85.4 25 0.00054 36.8 14.2 168 92-285 51-274 (322)
413 cd03174 DRE_TIM_metallolyase D 85.3 36 0.00079 32.9 14.9 158 78-257 54-219 (265)
414 cd08207 RLP_NonPhot Ribulose b 85.3 30 0.00064 37.3 15.3 127 142-281 134-264 (406)
415 PLN03228 methylthioalkylmalate 85.2 13 0.00028 41.1 12.9 109 133-258 202-316 (503)
416 PLN02493 probable peroxisomal 85.1 4 8.6E-05 43.3 8.6 93 77-184 215-307 (367)
417 PRK07896 nicotinate-nucleotide 85.1 20 0.00043 36.9 13.4 146 78-263 125-277 (289)
418 PRK13111 trpA tryptophan synth 85.1 19 0.00041 36.2 13.1 110 152-273 13-136 (258)
419 PRK00230 orotidine 5'-phosphat 85.0 41 0.00088 33.0 16.2 145 142-315 46-212 (230)
420 PRK09140 2-dehydro-3-deoxy-6-p 85.0 24 0.00053 34.2 13.4 143 151-315 13-184 (206)
421 cd03318 MLE Muconate Lactonizi 85.0 30 0.00066 35.7 15.0 100 161-281 140-243 (365)
422 cd00739 DHPS DHPS subgroup of 85.0 33 0.00071 34.4 14.7 103 163-282 22-125 (257)
423 PRK08645 bifunctional homocyst 84.9 45 0.00098 37.5 17.2 158 107-289 54-234 (612)
424 PRK07534 methionine synthase I 84.8 10 0.00022 39.6 11.3 148 163-314 43-213 (336)
425 PF02679 ComA: (2R)-phospho-3- 84.8 1.9 4.2E-05 43.2 5.8 117 137-276 54-196 (244)
426 TIGR02810 agaZ_gatZ D-tagatose 84.6 65 0.0014 35.0 21.5 209 103-323 31-295 (420)
427 PRK07107 inosine 5-monophospha 84.6 6.2 0.00013 43.4 10.1 125 167-312 182-314 (502)
428 TIGR02090 LEU1_arch isopropylm 84.6 56 0.0012 34.3 17.8 154 78-257 51-213 (363)
429 TIGR03586 PseI pseudaminic aci 84.6 36 0.00078 35.6 15.2 124 36-162 33-174 (327)
430 cd04722 TIM_phosphate_binding 84.5 27 0.00059 31.0 12.7 127 165-312 12-145 (200)
431 COG0113 HemB Delta-aminolevuli 84.4 22 0.00047 37.2 13.2 46 239-285 232-278 (330)
432 cd08209 RLP_DK-MTP-1-P-enolase 84.3 34 0.00075 36.7 15.2 119 142-273 115-238 (391)
433 cd08213 RuBisCO_large_III Ribu 84.3 37 0.00079 36.7 15.5 119 141-273 121-245 (412)
434 PLN02321 2-isopropylmalate syn 84.1 16 0.00035 41.4 13.3 274 101-408 113-412 (632)
435 PRK06843 inosine 5-monophospha 84.1 2.1 4.6E-05 45.8 6.1 66 240-311 152-223 (404)
436 cd07940 DRE_TIM_IPMS 2-isoprop 84.1 14 0.00031 36.7 11.7 200 102-329 26-242 (268)
437 TIGR01927 menC_gamma/gm+ o-suc 84.0 13 0.00029 37.8 11.7 101 162-283 110-212 (307)
438 PLN02898 HMP-P kinase/thiamin- 84.0 42 0.00091 36.5 16.1 142 152-314 294-479 (502)
439 COG0646 MetH Methionine syntha 83.9 16 0.00035 37.9 12.1 162 163-330 51-244 (311)
440 PLN02321 2-isopropylmalate syn 83.8 16 0.00034 41.5 13.0 108 133-257 203-316 (632)
441 PRK09283 delta-aminolevulinic 83.8 12 0.00026 39.1 11.2 168 92-285 49-273 (323)
442 COG0269 SgbH 3-hexulose-6-phos 83.8 4.9 0.00011 39.8 8.0 92 209-312 45-139 (217)
443 PRK05500 bifunctional orotidin 83.7 37 0.00081 37.3 15.5 153 149-330 87-263 (477)
444 cd04735 OYE_like_4_FMN Old yel 83.7 29 0.00063 36.1 14.2 85 100-187 148-257 (353)
445 cd00377 ICL_PEPM Members of th 83.6 8.1 0.00017 38.3 9.6 84 171-261 22-105 (243)
446 PF01680 SOR_SNZ: SOR/SNZ fami 83.5 12 0.00026 36.5 10.2 129 81-257 9-142 (208)
447 cd08148 RuBisCO_large Ribulose 83.5 40 0.00087 35.9 15.2 119 142-274 118-242 (366)
448 TIGR03128 RuMP_HxlA 3-hexulose 83.4 35 0.00076 32.1 13.5 121 98-259 63-185 (206)
449 PRK00278 trpC indole-3-glycero 83.4 3.9 8.5E-05 40.9 7.4 115 224-345 49-173 (260)
450 TIGR00973 leuA_bact 2-isopropy 83.4 23 0.00049 38.9 13.8 150 102-274 29-183 (494)
451 cd07938 DRE_TIM_HMGL 3-hydroxy 83.1 30 0.00064 34.9 13.6 153 102-274 26-186 (274)
452 PLN02826 dihydroorotate dehydr 83.1 17 0.00038 39.0 12.5 128 134-274 240-387 (409)
453 COG0159 TrpA Tryptophan syntha 83.0 36 0.00078 34.8 14.0 125 131-278 74-230 (265)
454 cd00384 ALAD_PBGS Porphobilino 82.9 14 0.0003 38.5 11.1 168 92-285 41-265 (314)
455 PRK10200 putative racemase; Pr 82.7 16 0.00034 35.9 11.1 99 202-309 13-122 (230)
456 PRK07695 transcriptional regul 82.7 9.8 0.00021 36.0 9.5 95 78-188 86-180 (201)
457 COG0167 PyrD Dihydroorotate de 82.6 20 0.00044 37.2 12.3 138 103-259 116-269 (310)
458 PRK00043 thiE thiamine-phospha 82.5 10 0.00023 35.5 9.6 95 79-188 95-191 (212)
459 TIGR01306 GMP_reduct_2 guanosi 82.4 24 0.00052 36.8 12.9 141 134-310 67-227 (321)
460 TIGR03569 NeuB_NnaB N-acetylne 82.3 49 0.0011 34.6 15.1 217 77-352 77-318 (329)
461 PRK08508 biotin synthase; Prov 82.3 34 0.00074 34.4 13.6 126 105-257 52-183 (279)
462 PF01180 DHO_dh: Dihydroorotat 82.2 34 0.00073 34.4 13.6 188 124-330 69-293 (295)
463 KOG1606 Stationary phase-induc 82.0 3.9 8.5E-05 40.7 6.5 197 79-314 14-242 (296)
464 PRK09389 (R)-citramalate synth 81.9 20 0.00044 39.2 12.7 131 104-257 81-215 (488)
465 PLN02591 tryptophan synthase 81.9 39 0.00084 34.0 13.8 174 158-351 9-210 (250)
466 TIGR03326 rubisco_III ribulose 81.9 45 0.00098 36.0 15.0 118 142-273 135-258 (412)
467 PRK04452 acetyl-CoA decarbonyl 81.8 48 0.001 34.7 14.8 36 239-275 277-312 (319)
468 PRK01033 imidazole glycerol ph 81.8 27 0.00059 34.7 12.6 145 78-260 63-226 (258)
469 PRK06256 biotin synthase; Vali 81.7 47 0.001 33.9 14.6 155 92-261 145-301 (336)
470 PRK12858 tagatose 1,6-diphosph 81.7 27 0.00059 36.7 13.0 143 167-320 108-286 (340)
471 PRK02901 O-succinylbenzoate sy 81.6 23 0.0005 36.8 12.4 139 150-315 78-219 (327)
472 PLN02980 2-oxoglutarate decarb 81.6 13 0.00029 46.4 12.4 103 160-282 1087-1190(1655)
473 PRK08072 nicotinate-nucleotide 81.6 11 0.00024 38.5 9.8 62 245-311 200-261 (277)
474 PRK05718 keto-hydroxyglutarate 81.5 47 0.001 32.5 13.9 130 143-314 10-140 (212)
475 TIGR02317 prpB methylisocitrat 81.5 5.3 0.00012 40.9 7.6 133 172-311 27-182 (285)
476 TIGR01305 GMP_reduct_1 guanosi 81.4 62 0.0013 34.3 15.4 145 132-310 77-241 (343)
477 TIGR01949 AroFGH_arch predicte 81.3 25 0.00054 34.8 12.1 123 102-259 96-226 (258)
478 COG0434 SgcQ Predicted TIM-bar 81.3 2 4.3E-05 43.3 4.3 48 239-287 33-95 (263)
479 TIGR02082 metH 5-methyltetrahy 81.3 63 0.0014 39.4 17.4 90 169-275 152-248 (1178)
480 PRK07428 nicotinate-nucleotide 81.2 7.5 0.00016 39.9 8.6 62 245-312 208-273 (288)
481 cd00429 RPE Ribulose-5-phospha 81.2 47 0.001 30.9 15.7 166 102-315 18-199 (211)
482 PRK11320 prpB 2-methylisocitra 80.9 6.1 0.00013 40.6 7.8 133 172-311 31-187 (292)
483 COG0119 LeuA Isopropylmalate/h 80.8 18 0.00038 39.0 11.6 107 133-257 110-220 (409)
484 cd07940 DRE_TIM_IPMS 2-isoprop 80.8 31 0.00068 34.3 12.7 108 133-257 107-218 (268)
485 cd07939 DRE_TIM_NifV Streptomy 80.7 62 0.0013 32.0 18.6 153 79-257 50-211 (259)
486 cd08209 RLP_DK-MTP-1-P-enolase 80.6 69 0.0015 34.4 15.7 184 125-332 161-371 (391)
487 cd07938 DRE_TIM_HMGL 3-hydroxy 80.4 25 0.00054 35.5 11.9 132 101-257 78-222 (274)
488 COG2875 CobM Precorrin-4 methy 80.3 30 0.00064 35.0 12.0 116 203-332 60-182 (254)
489 cd03320 OSBS o-Succinylbenzoat 80.2 22 0.00047 35.2 11.3 122 166-311 85-207 (263)
490 TIGR03332 salvage_mtnW 2,3-dik 80.1 77 0.0017 34.2 16.0 186 125-332 176-387 (407)
491 cd04726 KGPDC_HPS 3-Keto-L-gul 80.1 8.8 0.00019 35.8 8.1 77 93-186 110-187 (202)
492 cd00959 DeoC 2-deoxyribose-5-p 80.1 57 0.0012 31.2 13.8 77 102-187 75-153 (203)
493 PRK15072 bifunctional D-altron 80.1 39 0.00086 35.8 13.8 110 163-281 127-261 (404)
494 CHL00040 rbcL ribulose-1,5-bis 79.9 49 0.0011 36.4 14.7 128 142-281 158-292 (475)
495 PRK06015 keto-hydroxyglutarate 79.8 32 0.00068 33.6 11.9 124 163-326 14-143 (201)
496 PF00016 RuBisCO_large: Ribulo 79.7 41 0.00089 35.0 13.4 123 140-274 3-133 (309)
497 PF03102 NeuB: NeuB family; I 79.6 9.9 0.00021 38.0 8.6 179 36-257 12-198 (241)
498 cd04823 ALAD_PBGS_aspartate_ri 79.6 22 0.00047 37.2 11.3 170 92-285 44-270 (320)
499 cd08212 RuBisCO_large_I Ribulo 79.6 51 0.0011 36.1 14.6 128 142-281 136-269 (450)
500 PRK15129 L-Ala-D/L-Glu epimera 79.4 52 0.0011 33.7 14.0 79 160-262 126-204 (321)
No 1
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=100.00 E-value=6.2e-74 Score=572.30 Aligned_cols=286 Identities=36% Similarity=0.557 Sum_probs=269.8
Q ss_pred CchHHHHHHHHhCCCceEecccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEE
Q 012478 75 LSPAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVI 154 (462)
Q Consensus 75 ~~~a~~LR~ll~~~~~iv~p~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVI 154 (462)
|.++++||++|++++++++||+||++|||++|++||+++|+||+++|++++|+||.+++|++||++++++|++++++|||
T Consensus 3 ~~~~~~lr~ll~~~~~l~~p~~~Da~SAri~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~~iPvi 82 (292)
T PRK11320 3 HSAGARFRAALAAEKPLQIVGTINAYHALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDACDLPLL 82 (292)
T ss_pred CCHHHHHHHHHcCCCcEEecCCCCHHHHHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhccCCCEE
Confidence 45577899999999999999999999999999999999999999998778999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchh
Q 012478 155 GDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSR 234 (462)
Q Consensus 155 aD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~ 234 (462)
||+|+|||++.|++++|++|+++||+|||||||++||+|||+.||+|+|.+||++||+||++|++ ++||+|+||||++
T Consensus 83 aD~d~GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~--~~d~~IiARTDa~ 160 (292)
T PRK11320 83 VDIDTGFGGAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDART--DPDFVIMARTDAL 160 (292)
T ss_pred EECCCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhcc--CCCeEEEEecCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999987 5899999999999
Q ss_pred hcccHHHHHHHHHHhHhcCCcEEEecCCCCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcCCCEEeccchHH
Q 012478 235 QALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLI 314 (462)
Q Consensus 235 ~~~gldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~ll 314 (462)
...++||||+|+++|.+||||+||+|++++.++++++++.++ +|+++|++++ +++|.++.+||++|||++|+||++++
T Consensus 161 ~~~g~deAI~Ra~aY~eAGAD~ifi~~~~~~~~i~~~~~~~~-~Pl~~n~~~~-~~~p~~s~~~L~~lGv~~v~~~~~~~ 238 (292)
T PRK11320 161 AVEGLDAAIERAQAYVEAGADMIFPEAMTELEMYRRFADAVK-VPILANITEF-GATPLFTTEELASAGVAMVLYPLSAF 238 (292)
T ss_pred cccCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHhcC-CCEEEEeccC-CCCCCCCHHHHHHcCCcEEEEChHHH
Confidence 888999999999999999999999999999999999999997 6999999986 67899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcC-CC-CCCCCCCCHHHHHHhcCcccHH-HHHHhhccc
Q 012478 315 GVSVRAMQDALTAIKGG-RI-PSPGSMPSFQEIKETLGFNTYY-EEEKRYATS 364 (462)
Q Consensus 315 ~aa~~Am~~~l~~l~~g-~~-~~~~~~~s~~e~~~lvg~~~~~-~~e~~y~~~ 364 (462)
++++++|+++++.|++. .. ...+.+++|+|+++++||++|. .+|++|...
T Consensus 239 ~aa~~a~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 291 (292)
T PRK11320 239 RAMNKAAENVYEAIRRDGTQKAVVDTMQTREELYEYLGYHAYEQKLDALFAQK 291 (292)
T ss_pred HHHHHHHHHHHHHHHHcCCcccchhccCCHHHHHHhcCcHHHHHHHHHHhccC
Confidence 99999999999999864 33 3456688999999999999999 788888653
No 2
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=100.00 E-value=6e-74 Score=570.81 Aligned_cols=281 Identities=38% Similarity=0.641 Sum_probs=267.9
Q ss_pred HHHHHHHHhCCCceEecccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeC
Q 012478 78 AKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDG 157 (462)
Q Consensus 78 a~~LR~ll~~~~~iv~p~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~ 157 (462)
+++||+||++++++++||+||++||+++|++||+++|+||+++|+ ++|+||.+++|++||++++++|++++++|||||+
T Consensus 2 ~~~lr~l~~~~~~l~~p~~~Da~SAri~e~aGf~Ai~~sg~~~a~-~lG~pD~g~lt~~e~~~~~~~I~~~~~iPviaD~ 80 (285)
T TIGR02317 2 GKAFRAALAKEDILQIPGAINAMAALLAERAGFEAIYLSGAAVAA-SLGLPDLGITTLDEVAEDARRITRVTDLPLLVDA 80 (285)
T ss_pred hHHHHHHHhCCCcEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHH-hCCCCCCCCCCHHHHHHHHHHHHhccCCCEEEEC
Confidence 578999999999999999999999999999999999999999997 7999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcc
Q 012478 158 DNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQAL 237 (462)
Q Consensus 158 DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~ 237 (462)
|+|||++.|++++|++|+++||+|||||||++||+|||+.||+|+|.+||++||+||++|+. ++||+|+||||++...
T Consensus 81 d~GyG~~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~--~~d~~IiARTDa~~~~ 158 (285)
T TIGR02317 81 DTGFGEAFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKR--DEDFVIIARTDARAVE 158 (285)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhcc--CCCEEEEEEcCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999987 4799999999999888
Q ss_pred cHHHHHHHHHHhHhcCCcEEEecCCCCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcCCCEEeccchHHHHH
Q 012478 238 SLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVS 317 (462)
Q Consensus 238 gldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~ll~aa 317 (462)
++||||+|+++|.+||||+||+|++.+.+++++++++++ +|+++|++++ +++|.++.+||++|||++|+||+++++++
T Consensus 159 g~deAI~Ra~ay~~AGAD~vfi~g~~~~e~i~~~~~~i~-~Pl~~n~~~~-~~~p~~s~~eL~~lGv~~v~~~~~~~~aa 236 (285)
T TIGR02317 159 GLDAAIERAKAYVEAGADMIFPEALTSLEEFRQFAKAVK-VPLLANMTEF-GKTPLFTADELREAGYKMVIYPVTAFRAM 236 (285)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhcC-CCEEEEeccC-CCCCCCCHHHHHHcCCcEEEEchHHHHHH
Confidence 999999999999999999999999999999999999998 6999999986 67899999999999999999999999999
Q ss_pred HHHHHHHHHHHHc-CCC-CCCCCCCCHHHHHHhcCcccHHHHHHhhcc
Q 012478 318 VRAMQDALTAIKG-GRI-PSPGSMPSFQEIKETLGFNTYYEEEKRYAT 363 (462)
Q Consensus 318 ~~Am~~~l~~l~~-g~~-~~~~~~~s~~e~~~lvg~~~~~~~e~~y~~ 363 (462)
+++|++++..|++ |.. ...+.+.+|+||++++||++|.++|++|..
T Consensus 237 ~~a~~~~~~~l~~~g~~~~~~~~~~~~~e~~~~~g~~~~~~~~~~~~~ 284 (285)
T TIGR02317 237 NKAAEAVYNEIKEHGTQKGSLDDMQTRKELYELIGYYDYEKKDDSIFK 284 (285)
T ss_pred HHHHHHHHHHHHHcCCcccccccCCCHHHHHHHcChHHHHHHHHHHhc
Confidence 9999999999986 443 345678899999999999999999999964
No 3
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.5e-74 Score=568.87 Aligned_cols=282 Identities=39% Similarity=0.619 Sum_probs=271.3
Q ss_pred chHHHHHHHHhCCCceEecccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEE
Q 012478 76 SPAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIG 155 (462)
Q Consensus 76 ~~a~~LR~ll~~~~~iv~p~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIa 155 (462)
+++++||++|++++++++||+||++||++++++||+++|+||+++++ ++|+||.+.+|++|+++++++|++++++||+|
T Consensus 5 ~~~~~fR~l~~~~~~~~~pg~~d~~sA~la~~aGF~al~~sg~~vA~-slG~pD~~~~t~~e~~~~vrrI~~a~~lPv~v 83 (289)
T COG2513 5 EPGAAFRALHASGDPLVLPGAWDAGSALLAERAGFKALYLSGAGVAA-SLGLPDLGITTLDEVLADARRITDAVDLPVLV 83 (289)
T ss_pred cHHHHHHHHHhCCCCEEecCCcCHHHHHHHHHcCCeEEEeccHHHHH-hcCCCccccccHHHHHHHHHHHHhhcCCceEE
Confidence 47889999999999999999999999999999999999999999986 79999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhh
Q 012478 156 DGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQ 235 (462)
Q Consensus 156 D~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~ 235 (462)
|+|+|||++.|+++||++++++|++|||||||++||||||..||+|+|.+||++||+||++++++ ++|+|+||||++.
T Consensus 84 D~dtGfG~~~nvartV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~--~~fvi~ARTda~~ 161 (289)
T COG2513 84 DIDTGFGEALNVARTVRELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRD--PDFVIIARTDALL 161 (289)
T ss_pred eccCCCCcHHHHHHHHHHHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccC--CCeEEEeehHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999985 8999999999999
Q ss_pred cccHHHHHHHHHHhHhcCCcEEEecCCCCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 012478 236 ALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (462)
Q Consensus 236 ~~gldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~ll~ 315 (462)
..++|+||+|+++|.|||||+||+|++.+.+++++|+++++ +|+++||+++ |+||.+|.++|+++||++||||++.++
T Consensus 162 ~~~ld~AI~Ra~AY~eAGAD~if~~al~~~e~i~~f~~av~-~pl~~N~t~~-g~tp~~~~~~L~~~Gv~~V~~~~~~~r 239 (289)
T COG2513 162 VEGLDDAIERAQAYVEAGADAIFPEALTDLEEIRAFAEAVP-VPLPANITEF-GKTPLLTVAELAELGVKRVSYGLTAFR 239 (289)
T ss_pred hccHHHHHHHHHHHHHcCCcEEccccCCCHHHHHHHHHhcC-CCeeeEeecc-CCCCCcCHHHHHhcCceEEEECcHHHH
Confidence 99999999999999999999999999999999999999998 8999999998 789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCC--CCCCCCCHHHHHHhcCcccHHHHHHhhc
Q 012478 316 VSVRAMQDALTAIKGGRIP--SPGSMPSFQEIKETLGFNTYYEEEKRYA 362 (462)
Q Consensus 316 aa~~Am~~~l~~l~~g~~~--~~~~~~s~~e~~~lvg~~~~~~~e~~y~ 362 (462)
++++|++++++.|++++.. ..+.|.+.+|++++++|.+|.+.+.+|.
T Consensus 240 aa~~a~~~~~~~i~~~gt~~~~~d~m~~r~~l~~~~~y~~~~~~~~~~~ 288 (289)
T COG2513 240 AALKAAEQAAREIRREGTQANVLDKMQTRKELYDLINYYDYEAKDDELF 288 (289)
T ss_pred HHHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHHhhcHHHHHHHHHhhc
Confidence 9999999999999975432 4578889999999999999999999885
No 4
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=100.00 E-value=2.4e-73 Score=568.37 Aligned_cols=286 Identities=40% Similarity=0.666 Sum_probs=269.5
Q ss_pred chHHHHHHHHhCCCceEecccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEE
Q 012478 76 SPAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIG 155 (462)
Q Consensus 76 ~~a~~LR~ll~~~~~iv~p~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIa 155 (462)
.+++.||++|++++++++||+||++|||++|++||+++|+||++++++++|+||.+.++++||++++++|++++++||+|
T Consensus 3 ~~~~~~r~l~~~~~~l~~p~v~Da~SArl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~~lPv~a 82 (294)
T TIGR02319 3 TKARTFRELMNAPEILVVPSAYDALSAKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLAVDVPVIM 82 (294)
T ss_pred cHHHHHHHHhcCCCcEEeecCcCHHHHHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhccCCCEEE
Confidence 45789999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhh
Q 012478 156 DGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQ 235 (462)
Q Consensus 156 D~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~ 235 (462)
|+|+|||++.|++++|++|+++||+|||||||++||+|||+.||+|+|.+|+++||+||++|+.+ +||+||||||++.
T Consensus 83 D~dtGyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~--~d~~I~ARTDa~~ 160 (294)
T TIGR02319 83 DADAGYGNAMSVWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEARED--EDFTIIARTDARE 160 (294)
T ss_pred ECCCCCCCcHHHHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccC--CCeEEEEEecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999975 7999999999998
Q ss_pred cccHHHHHHHHHHhHhcCCcEEEecCCCCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 012478 236 ALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (462)
Q Consensus 236 ~~gldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~ll~ 315 (462)
..++||+|+|+++|.+||||+||+|++.+++++++++++++ .|+++||+.+ +++|.++.+||++|||++|+||+++++
T Consensus 161 ~~g~deaI~Ra~aY~eAGAD~ifi~~~~~~~ei~~~~~~~~-~P~~~nv~~~-~~~p~~s~~eL~~lG~~~v~~~~~~~~ 238 (294)
T TIGR02319 161 SFGLDEAIRRSREYVAAGADCIFLEAMLDVEEMKRVRDEID-APLLANMVEG-GKTPWLTTKELESIGYNLAIYPLSGWM 238 (294)
T ss_pred cCCHHHHHHHHHHHHHhCCCEEEecCCCCHHHHHHHHHhcC-CCeeEEEEec-CCCCCCCHHHHHHcCCcEEEEcHHHHH
Confidence 88999999999999999999999999999999999999997 4888999986 779999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHc-CCCC-CCCCC---CCHHHHHHhcCcccHHHHHHhhcccc
Q 012478 316 VSVRAMQDALTAIKG-GRIP-SPGSM---PSFQEIKETLGFNTYYEEEKRYATSM 365 (462)
Q Consensus 316 aa~~Am~~~l~~l~~-g~~~-~~~~~---~s~~e~~~lvg~~~~~~~e~~y~~~~ 365 (462)
+++.||++++.+|++ |... ..+.+ .+|+||++++||++|+++|++|.+..
T Consensus 239 aa~~a~~~~~~~l~~~G~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~e~~~~~~~ 293 (294)
T TIGR02319 239 AAASVLRKLFTELREAGTTQKFWDDMGLKMSFAELFEVFEYSKISELEARFVRDQ 293 (294)
T ss_pred HHHHHHHHHHHHHHHcCCcccccccccccCCHHHHHHHhChHHHHHHHHhhcccC
Confidence 999999999999985 4332 23333 79999999999999999999998643
No 5
>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase. This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.
Probab=100.00 E-value=1.2e-70 Score=548.34 Aligned_cols=282 Identities=32% Similarity=0.486 Sum_probs=262.0
Q ss_pred chHHHHHHHHhCCCceEecccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEE
Q 012478 76 SPAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIG 155 (462)
Q Consensus 76 ~~a~~LR~ll~~~~~iv~p~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIa 155 (462)
.++++||++|++++++++|||||++||+++|++||+++|+||+++|++ +|+||.++++++||++++++|++++++||+|
T Consensus 2 ~~~~~lr~~l~~~~~~~~pg~~D~lSAri~e~aGf~ai~~ss~~va~s-lG~pD~g~l~~~e~~~~~~~I~~~~~lPv~a 80 (290)
T TIGR02321 2 TKNQALRAALDSGRLFTAMAAHNPLVAKLAEQAGFGGIWGSGFELSAS-YAVPDANILSMSTHLEMMRAIASTVSIPLIA 80 (290)
T ss_pred ChHHHHHHHHhCCCCEEeccccCHHHHHHHHHcCCCEEEECHHHHHHH-CCCCCcccCCHHHHHHHHHHHHhccCCCEEE
Confidence 457799999999999999999999999999999999999999999976 8999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCC-CC-CcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecch
Q 012478 156 DGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHT-RG-RKVVSREEAVMRIKAAVDARKESGSDIVIVARTDS 233 (462)
Q Consensus 156 D~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~-~g-k~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA 233 (462)
|+|+|||++.|++++|++|+++||+|||||||++||+|||. .| ++|+|.+||++||+||++++. ++||+||||||+
T Consensus 81 D~d~GyG~~~~v~~tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~--~~d~~I~ARTDa 158 (290)
T TIGR02321 81 DIDTGFGNAVNVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARA--DRDFVVIARVEA 158 (290)
T ss_pred ECCCCCCCcHHHHHHHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHhCC--CCCEEEEEEecc
Confidence 99999999989999999999999999999999999999997 56 789999999999999999975 589999999999
Q ss_pred h-hcccHHHHHHHHHHhHhcCCcEEEecC-CCCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcC-CCEEecc
Q 012478 234 R-QALSLEESLRRSRAFADAGADVLFIDA-LASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELG-FKLVAYP 310 (462)
Q Consensus 234 ~-~~~gldeAI~RakAy~eAGAD~Ifie~-~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lG-v~~V~yp 310 (462)
+ ...++||||+|+++|.+||||+||+|+ +.++++++++++.++. |+++++++ +++|.++.+||++|| |++||||
T Consensus 159 ~~~~~g~deAI~Ra~aY~eAGAD~ifv~~~~~~~~ei~~~~~~~~~-p~pv~~~~--~~~p~~~~~~l~~lg~~~~v~~g 235 (290)
T TIGR02321 159 LIAGLGQQEAVRRGQAYEEAGADAILIHSRQKTPDEILAFVKSWPG-KVPLVLVP--TAYPQLTEADIAALSKVGIVIYG 235 (290)
T ss_pred ccccCCHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHhcCC-CCCeEEec--CCCCCCCHHHHHHhcCCcEEEEC
Confidence 8 567899999999999999999999998 5999999999999873 56666665 568999999999999 9999999
Q ss_pred chHHHHHHHHHHHHHHHHHc-CCC-CCCCCCCCHHHHHHhcCcccHHHHHHhhcc
Q 012478 311 LSLIGVSVRAMQDALTAIKG-GRI-PSPGSMPSFQEIKETLGFNTYYEEEKRYAT 363 (462)
Q Consensus 311 ~~ll~aa~~Am~~~l~~l~~-g~~-~~~~~~~s~~e~~~lvg~~~~~~~e~~y~~ 363 (462)
++++++++++|+++++.|++ |.. ...+.|.+|+||++++||++|.++|++|.+
T Consensus 236 ~~~~~aa~~a~~~~~~~i~~~g~~~~~~~~~~~~~e~~~l~g~~~~~~~e~~~~~ 290 (290)
T TIGR02321 236 NHAIRAAVGAVREVFARIRRDGGIREVDAALPSVKEIIELQGDERMRAVEARYLK 290 (290)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCcccccccCCCHHHHHHHhChHHHHHHHHHhcC
Confidence 99999999999999999986 443 345678899999999999999999999964
No 6
>PRK15063 isocitrate lyase; Provisional
Probab=100.00 E-value=3.4e-69 Score=557.14 Aligned_cols=289 Identities=26% Similarity=0.358 Sum_probs=269.3
Q ss_pred eccchhhhhhccc-CCCCceeeccccc-------CCCccccc--cCchHHHHHHHHhCCCceEecccCChHHHHHHHHhC
Q 012478 40 NKTNTNTLLLNTA-TNPGTINRTRVYR-------KNSTGVEA--CLSPAKSLRQILELPGVHQGPACFDALSAKLVEKSG 109 (462)
Q Consensus 40 ~~~~~~~~~~~~~-~~Pr~~~~~R~y~-------rgs~~~~~--a~~~a~~LR~ll~~~~~iv~p~ayDalSArl~e~aG 109 (462)
+++++...+++|| ++|||+||+|+|+ |||+.++| +...+++||++|++++++.+|||||+++|++++++|
T Consensus 4 ~~~~~~~~~~~~w~~~~r~~~i~r~y~a~~v~~lrgs~~~~~~~a~~~a~kLr~lL~~~~~~~~~Ga~d~~~A~q~~~aG 83 (428)
T PRK15063 4 TRTQQIEELEKDWATNPRWKGITRPYSAEDVVRLRGSVQIEHTLARRGAEKLWELLHGEPYVNALGALTGNQAVQQVKAG 83 (428)
T ss_pred cHHHHHHHHHHHhccCCccccCcCCCCHHHHHHHcCCCCCCCchHHHHHHHHHHHHhCCCcEEecCCCCHHHHHHHHHhC
Confidence 3455556667777 9999999999998 99999999 788899999999999999999999999999999999
Q ss_pred CcEEEeccHHHHh----hhccCCCCCCCCHHHHHHHHHHHHhhcC------------------CcEEEeCCCCCCCHHHH
Q 012478 110 FSFCFTSGFSISA----ARLALPDTGFISYGEMVDQGQLITQAVS------------------IPVIGDGDNGYGNAMNV 167 (462)
Q Consensus 110 fdaI~vSG~avSa----s~lG~PD~g~vsl~Eml~~~~~I~ra~~------------------iPVIaD~DtGyG~~~nv 167 (462)
|++||+|||++|+ +.+|+||.+++++++|++.+++|++++. +|||||+|+|||++.||
T Consensus 84 f~AIy~SG~~vAa~~~~s~~g~PD~~l~p~~~v~~~v~~I~~a~~~~d~~~~~~~~~~~~d~~~PIiADaDtGfGg~~nv 163 (428)
T PRK15063 84 LKAIYLSGWQVAADANLAGQMYPDQSLYPANSVPAVVKRINNALRRADQIQWSEGDKGYIDYFAPIVADAEAGFGGVLNA 163 (428)
T ss_pred CCEEEECHHHHhcCcccccCCCCCcccCCHHHHHHHHHHHHHHHHHhhhHhhhhcccccccCCCCeEEECCCCCCCcHHH
Confidence 9999999999997 4689999999999999999999998863 99999999999999999
Q ss_pred HHHHHHHHHhCccEEEeCCCCC-CCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhc----------
Q 012478 168 KRTVKGYIKAGFAGIILEDQVS-PKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQA---------- 236 (462)
Q Consensus 168 ~rtVk~l~~AGaaGI~IEDq~~-PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~---------- 236 (462)
++++|+|+++||+|||||||+. ||||||++||.|+|.+||++||+||+.|++.+|.+++||||||++++
T Consensus 164 ~~~vk~~ieAGaAGIhiEDQ~~~~KkCGH~~GK~Lvp~~e~i~kL~AAr~A~d~~g~~~vIiARTDA~aa~li~s~~d~r 243 (428)
T PRK15063 164 FELMKAMIEAGAAGVHFEDQLASEKKCGHMGGKVLVPTQEAIRKLVAARLAADVMGVPTLVIARTDAEAADLLTSDVDER 243 (428)
T ss_pred HHHHHHHHHcCCeEEEEeCCCCCccccCCCCCCeeecHHHHHHHHHHHHHHHHhcCCCeEEEEECCcccccccccccccc
Confidence 9999999999999999999996 89999999999999999999999999999988999999999999764
Q ss_pred ------------------ccHHHHHHHHHHhHhcCCcEEEecC-CCCHHHHHHHHHhCCCCceeeeeeecCCCCCCCC--
Q 012478 237 ------------------LSLEESLRRSRAFADAGADVLFIDA-LASKEEMKAFCEISPLVPKMANMLEGGGKTPILN-- 295 (462)
Q Consensus 237 ------------------~gldeAI~RakAy~eAGAD~Ifie~-~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls-- 295 (462)
.++|+||+|+++|++ |||+||+|. +++.+++++|++.++ .+.|.|++.. +++|.++
T Consensus 244 D~~fi~g~r~~eg~y~~~~Gld~AI~Ra~AYa~-GAD~iw~Et~~~d~ee~~~fa~~v~-~~~P~~~lay-n~sPsfnW~ 320 (428)
T PRK15063 244 DRPFITGERTAEGFYRVKAGIEQAIARGLAYAP-YADLIWCETSTPDLEEARRFAEAIH-AKFPGKLLAY-NCSPSFNWK 320 (428)
T ss_pred ccccccCCCccccccccccCHHHHHHHHHHHhc-CCCEEEeCCCCCCHHHHHHHHHhhc-ccCccceeec-CCCCCcccc
Confidence 589999999999999 999999995 899999999999986 3457788886 7899999
Q ss_pred -----------HHHHHhcCCCEEeccchHHHHHHHHHHHHHHHHHcC
Q 012478 296 -----------PLELEELGFKLVAYPLSLIGVSVRAMQDALTAIKGG 331 (462)
Q Consensus 296 -----------~~eL~~lGv~~V~yp~~ll~aa~~Am~~~l~~l~~g 331 (462)
.+||++|||+.++||++.++++..+|.+.++.+++.
T Consensus 321 ~~~~~~~~~~f~~eL~~~Gy~~~~~~la~~ha~~~a~~~~a~~~~~~ 367 (428)
T PRK15063 321 KNLDDATIAKFQRELGAMGYKFQFITLAGFHSLNYSMFDLAHGYARE 367 (428)
T ss_pred cccCHHHHHHHHHHHHHcCceEEEechHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999864
No 7
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=100.00 E-value=9.2e-63 Score=490.76 Aligned_cols=265 Identities=26% Similarity=0.361 Sum_probs=243.4
Q ss_pred HHHHHhCCCceEecccCChHHHHHHHHh---------CCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCC
Q 012478 81 LRQILELPGVHQGPACFDALSAKLVEKS---------GFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSI 151 (462)
Q Consensus 81 LR~ll~~~~~iv~p~ayDalSArl~e~a---------GfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~i 151 (462)
||++|++++++++||+||++||+++|++ ||+++|+||+++|+ ++|+||.+.+|++||++++++|++++++
T Consensus 1 lr~~l~~~~~l~~p~~~D~~SA~~~e~~~~~~~~~~~Gf~ai~~ss~~~a~-s~G~pD~~~~~~~e~~~~~~~I~~a~~~ 79 (285)
T TIGR02320 1 LRQLLHSKPLERLMEAHNGLSALIAEEARVEVGGESLGFDGIWSSSLTDST-SRGVPDIEEASWTQRLDVVEFMFDVTTK 79 (285)
T ss_pred ChHHhcCCCCEEEecCcCHHHHHHHHHhhhcccCcCCCcCEEEechHHHHH-HCCCCCcCcCCHHHHHHHHHHHHhhcCC
Confidence 6899999999999999999999999999 99999999999985 5999999999999999999999999999
Q ss_pred cEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCC---cccCHHHHHHHHHHHHHHHHhhCCCeEEE
Q 012478 152 PVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGR---KVVSREEAVMRIKAAVDARKESGSDIVIV 228 (462)
Q Consensus 152 PVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk---~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIi 228 (462)
||++|+|+| |++.++.++|++|+++||+||+||||++||+|||.+++ .++|.+|+++||+|+++++. +++|+|+
T Consensus 80 Pv~~D~d~G-g~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~--~~~~~Ii 156 (285)
T TIGR02320 80 PIILDGDTG-GNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQT--TEDFMII 156 (285)
T ss_pred CEEEecCCC-CCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhcc--CCCeEEE
Confidence 999999999 99999999999999999999999999999999999887 79999999999999999976 5799999
Q ss_pred Eecchhh-cccHHHHHHHHHHhHhcCCcEEEecC-CCCHHHHHHHHHhCCC----CceeeeeeecCCCCCCCCHHHHHhc
Q 012478 229 ARTDSRQ-ALSLEESLRRSRAFADAGADVLFIDA-LASKEEMKAFCEISPL----VPKMANMLEGGGKTPILNPLELEEL 302 (462)
Q Consensus 229 ARTDA~~-~~gldeAI~RakAy~eAGAD~Ifie~-~~s~eei~~i~~~v~~----vP~~~N~l~~~g~tP~ls~~eL~~l 302 (462)
||||++. ..+++|+|+|+++|.+||||+||+++ +.+.++++++++.++. +|++ ++. +.+|.++.+||+++
T Consensus 157 ARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~~~~~~~ei~~~~~~~~~~~p~~pl~--~~~--~~~~~~~~~eL~~l 232 (285)
T TIGR02320 157 ARVESLILGKGMEDALKRAEAYAEAGADGIMIHSRKKDPDEILEFARRFRNHYPRTPLV--IVP--TSYYTTPTDEFRDA 232 (285)
T ss_pred EecccccccCCHHHHHHHHHHHHHcCCCEEEecCCCCCHHHHHHHHHHhhhhCCCCCEE--Eec--CCCCCCCHHHHHHc
Confidence 9999974 57899999999999999999999997 6999999999998752 3544 333 45678899999999
Q ss_pred CCCEEeccchHHHHHHHHHHHHHHHHHc-CCCC-CCCCCCCHHHHHHhcCccc
Q 012478 303 GFKLVAYPLSLIGVSVRAMQDALTAIKG-GRIP-SPGSMPSFQEIKETLGFNT 353 (462)
Q Consensus 303 Gv~~V~yp~~ll~aa~~Am~~~l~~l~~-g~~~-~~~~~~s~~e~~~lvg~~~ 353 (462)
||++||||++++++++++|+++++++++ |... ..+.+.+|+|+++++||++
T Consensus 233 G~~~v~~~~~~~~aa~~a~~~~~~~~~~~g~~~~~~~~~~~~~e~~~~~~~~~ 285 (285)
T TIGR02320 233 GISVVIYANHLLRAAYAAMQQVAERILEHGRLVEVEDKCAPIKEIFRLIPGTE 285 (285)
T ss_pred CCCEEEEhHHHHHHHHHHHHHHHHHHHHcCCccccccccCCHHHHHHhcCCCC
Confidence 9999999999999999999999999986 4433 4556799999999999975
No 8
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=100.00 E-value=1.5e-62 Score=478.28 Aligned_cols=235 Identities=46% Similarity=0.677 Sum_probs=209.0
Q ss_pred HHHHHhCCCceEecccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCC
Q 012478 81 LRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNG 160 (462)
Q Consensus 81 LR~ll~~~~~iv~p~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtG 160 (462)
||+||++++++++||+||++|||++|++||+++|+||+++|++ +|+||.+.+|++||++++++|++++++||+||+|+|
T Consensus 1 fr~L~~~~~~l~~p~~~D~~SAr~~e~~Gf~ai~~sg~~~a~s-~G~pD~~~lt~~e~~~~~~~I~~~~~iPv~vD~d~G 79 (238)
T PF13714_consen 1 FRQLHEPGKPLVLPNVWDALSARLAERAGFDAIATSGAGVAAS-LGYPDGGLLTLTEMLAAVRRIARAVSIPVIVDADTG 79 (238)
T ss_dssp HHHHHHSSSSEEEEEESSHHHHHHHHHTT-SEEEEHHHHHHHH-TTS-SSS-S-HHHHHHHHHHHHHHSSSEEEEE-TTT
T ss_pred ChhhhcCCCcEEeCCCcCHHHHHHHHHcCCCEEEechHHHHHH-cCCCCCCCCCHHHHHHHHHHHHhhhcCcEEEEcccc
Confidence 7898888899999999999999999999999999999999975 599999999999999999999999999999999999
Q ss_pred CCC-HHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhh--cc
Q 012478 161 YGN-AMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQ--AL 237 (462)
Q Consensus 161 yG~-~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~--~~ 237 (462)
||+ +.|++++|++|+++|++||||||| +||| .+++++|.+||++||+|+++|+++ ++|+|+||||++. ..
T Consensus 80 yG~~~~~v~~tv~~~~~aG~agi~IEDq----~~~~-~~~~l~~~ee~~~kI~Aa~~a~~~--~~~~I~ARTDa~~~~~~ 152 (238)
T PF13714_consen 80 YGNDPENVARTVRELERAGAAGINIEDQ----RCGH-GGKQLVSPEEMVAKIRAAVDARRD--PDFVIIARTDAFLRAEE 152 (238)
T ss_dssp SSSSHHHHHHHHHHHHHCT-SEEEEESB----STTT-STT-B--HHHHHHHHHHHHHHHSS--TTSEEEEEECHHCHHHH
T ss_pred cCchhHHHHHHHHHHHHcCCcEEEeecc----ccCC-CCCceeCHHHHHHHHHHHHHhccC--CeEEEEEeccccccCCC
Confidence 999 999999999999999999999999 8999 889999999999999999999985 5699999999974 78
Q ss_pred cHHHHHHHHHHhHhcCCcEEEecCCCCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcCCCEEeccchHHHHH
Q 012478 238 SLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVS 317 (462)
Q Consensus 238 gldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~ll~aa 317 (462)
++||+|+|+++|.+||||+||++++.+.+++++++++++ +| +|++.. +. .++.+||++|||++|+||+++++++
T Consensus 153 ~~deaI~R~~aY~eAGAD~ifi~~~~~~~~i~~~~~~~~-~P--l~v~~~-~~--~~~~~eL~~lGv~~v~~~~~~~~aa 226 (238)
T PF13714_consen 153 GLDEAIERAKAYAEAGADMIFIPGLQSEEEIERIVKAVD-GP--LNVNPG-PG--TLSAEELAELGVKRVSYGNSLLRAA 226 (238)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEETTSSSHHHHHHHHHHHS-SE--EEEETT-SS--SS-HHHHHHTTESEEEETSHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhcC-CC--EEEEcC-CC--CCCHHHHHHCCCcEEEEcHHHHHHH
Confidence 999999999999999999999999999999999999985 45 566553 22 3799999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 012478 318 VRAMQDALTAIK 329 (462)
Q Consensus 318 ~~Am~~~l~~l~ 329 (462)
+++|++++++|+
T Consensus 227 ~~a~~~~~~~il 238 (238)
T PF13714_consen 227 MKAMRDAAEAIL 238 (238)
T ss_dssp HHHHHHHHHHH-
T ss_pred HHHHHHHHHhcC
Confidence 999999999874
No 9
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=100.00 E-value=5.9e-59 Score=453.29 Aligned_cols=240 Identities=47% Similarity=0.743 Sum_probs=226.4
Q ss_pred HHHHHhCCCceEecccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCC
Q 012478 81 LRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNG 160 (462)
Q Consensus 81 LR~ll~~~~~iv~p~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtG 160 (462)
||++|++++++++|||||++||++++++||+++|+||++++++ +|+||++.++++||+++++.|++++++||++|+|+|
T Consensus 1 ~r~l~~~~~~i~~~~~~D~~sA~~~e~~G~~ai~~s~~~~~~s-~G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G 79 (243)
T cd00377 1 LRALLESGGPLVLPGAWDALSARLAERAGFKAIYTSGAGVAAS-LGLPDGGLLTLDEVLAAVRRIARAVDLPVIADADTG 79 (243)
T ss_pred ChhHHhCCCcEEecCCCCHHHHHHHHHcCCCEEEeccHHHHHh-cCCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCC
Confidence 6899999999999999999999999999999999999999865 699999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhc--cc
Q 012478 161 YGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQA--LS 238 (462)
Q Consensus 161 yG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~--~g 238 (462)
||+..++.+++++++++|++|||||||.+||+|||++++.++|.+|+++||+|++++++.+ ++|+|+||||++.. .+
T Consensus 80 ~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~-~~~~IiARTDa~~~~~~~ 158 (243)
T cd00377 80 YGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDL-PDFVIIARTDALLAGEEG 158 (243)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhcc-CCeEEEEEcCchhccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999865 79999999999876 79
Q ss_pred HHHHHHHHHHhHhcCCcEEEecCCCCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcCCCEEeccchHHHHHH
Q 012478 239 LEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVSV 318 (462)
Q Consensus 239 ldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~ll~aa~ 318 (462)
++|+|+|+++|.+||||+||++++.+.+++++++++.+ .|+++|+.++ ++ .++.+||+++||++|+||++++++++
T Consensus 159 ~~eai~Ra~ay~~AGAD~v~v~~~~~~~~~~~~~~~~~-~Pl~~~~~~~-~~--~~~~~~l~~lG~~~v~~~~~~~~~a~ 234 (243)
T cd00377 159 LDEAIERAKAYAEAGADGIFVEGLKDPEEIRAFAEAPD-VPLNVNMTPG-GN--LLTVAELAELGVRRVSYGLALLRAAA 234 (243)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHhcCC-CCEEEEecCC-CC--CCCHHHHHHCCCeEEEEChHHHHHHH
Confidence 99999999999999999999999999999999999976 5877776654 22 47999999999999999999999999
Q ss_pred HHHHHHHH
Q 012478 319 RAMQDALT 326 (462)
Q Consensus 319 ~Am~~~l~ 326 (462)
.+|+++++
T Consensus 235 ~a~~~~~~ 242 (243)
T cd00377 235 KAMREAAR 242 (243)
T ss_pred HHHHHHHh
Confidence 99999865
No 10
>KOG1260 consensus Isocitrate lyase [Energy production and conversion]
Probab=100.00 E-value=1.2e-50 Score=415.66 Aligned_cols=400 Identities=36% Similarity=0.459 Sum_probs=335.1
Q ss_pred hhhhcccCCCCceeeccccc-------CCCcccc-c-cCchHHHHHHHH---hCCCceE-ecccCChHHHHHHHHhCCcE
Q 012478 46 TLLLNTATNPGTINRTRVYR-------KNSTGVE-A-CLSPAKSLRQIL---ELPGVHQ-GPACFDALSAKLVEKSGFSF 112 (462)
Q Consensus 46 ~~~~~~~~~Pr~~~~~R~y~-------rgs~~~~-~-a~~~a~~LR~ll---~~~~~iv-~p~ayDalSArl~e~aGfda 112 (462)
.+.+.||.++||.+|+|+|+ |||.... | +...+.+|.++| ++.+.+. .+|++|+.+|..+.++|+++
T Consensus 9 ~~iekww~ss~~~~ikr~ysasdv~~~~~s~~~~vypss~~a~kl~~llr~~~n~gtvs~t~Ga~dpvq~sq~~r~gl~~ 88 (492)
T KOG1260|consen 9 EEIEKWWCSSSFSRIKRNYTASDVAVLRGSSPASVYPSSRMARKLFRLLREHHNEGTVSDTLGAKDPVQASQMARAGLSA 88 (492)
T ss_pred HHHHHHhccCCcccccCCCchhhhhhcCCCCCcccchhhhhHHHHHHHHHHhccCCcccccccccCchhHHHHHHhcCCe
Confidence 46788999999999999998 9999887 4 666777888877 4444444 89999999999999999999
Q ss_pred EEeccHHHHhhhccC--CCCCCCCHHHHHHHHHHHHhh-----------c------C---CcEEEeCCCCCCCHHHHHHH
Q 012478 113 CFTSGFSISAARLAL--PDTGFISYGEMVDQGQLITQA-----------V------S---IPVIGDGDNGYGNAMNVKRT 170 (462)
Q Consensus 113 I~vSG~avSas~lG~--PD~g~vsl~Eml~~~~~I~ra-----------~------~---iPVIaD~DtGyG~~~nv~rt 170 (462)
+|+|||+++++..|- ||...++++...+.+.+|-+. . . +|||+|+|+|||+++||+++
T Consensus 89 iyiSG~~cs~~~~~~~~pD~adyP~dtvP~~v~rif~~q~~h~r~q~~~~~i~~~~~dyl~PIIaDad~G~G~atnv~k~ 168 (492)
T KOG1260|consen 89 IYISGWQCSATLSGKLGPDRADYPYDTVPESVERIFKSQLIHDRKQIEAGSIKAEESDYLIPIIADADAGFGGATNVFKT 168 (492)
T ss_pred EEeechhhhhhhccCCCCccccCCCcCCHHHHHHHHHHhhhcchhhhhhccccccccccccceeecCCCCCchHHHHHHH
Confidence 999999999877665 999999998777776666432 1 1 89999999999999999999
Q ss_pred HHHHHHhCccEEEeCCCCC-CCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHh
Q 012478 171 VKGYIKAGFAGIILEDQVS-PKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAF 249 (462)
Q Consensus 171 Vk~l~~AGaaGI~IEDq~~-PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy 249 (462)
+|.|+++||||||||||+. .|+|||+.|+.|||.+|++.||.|++.+++.+|.|++|+||||+++. .|.+-+-+++..
T Consensus 169 ~K~fIeaGaAGIhleDq~~~~k~cgh~sGr~VVPt~ehv~Rl~a~R~~~Dim~sd~iivARTDs~a~-~l~tS~iDpRDh 247 (492)
T KOG1260|consen 169 VKGFIEAGAAGIHLEDQACGEKKCGHMSGRVVVPTEEHVRRLKAARLAADIMGADTIIVARTDSRAA-SLLTSLIDPRDH 247 (492)
T ss_pred HHHHHHcccceeeeehhhcccccccccCCcEEecHHHHHHHHHHHHHHHHHhCCCeEEEEeccchhh-hhhhccCCchhh
Confidence 9999999999999999995 68999999999999999999999999999999999999999999854 445555568888
Q ss_pred HhcCCcEEEecCCCCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcCCCEEeccchHHHHHHHHHHHHHHHHH
Q 012478 250 ADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVSVRAMQDALTAIK 329 (462)
Q Consensus 250 ~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~ll~aa~~Am~~~l~~l~ 329 (462)
..+|++..=++. +.++++.++..-+.+|.+-|+.+.+++.|.+...++.+.+++.+-|+.+.......+|...|-.++
T Consensus 248 ~~i~g~~~~~~s--~~~emk~~~~~~~~~~k~~~~w~~~~kl~~f~ea~~~e~~~~~~~~~~~ei~~~~i~fdw~lpr~k 325 (492)
T KOG1260|consen 248 AFIGGATLSNDS--SLEEMKDFCNVGPLVAKLENMWESGAKLPTFNEAVLEEITYREVKYLASEIGVSEIFFDWELPRTK 325 (492)
T ss_pred hhhhccccchhh--HHHHHHhhcccchhhHHHHHhhhhccccccccHHHHhhhhhhhhhhhHhhhhhhhhhccccccccc
Confidence 888888776665 678999999877778999999998899999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCHHHHHHhcCcccHHHHHHhhcccc------------------cccc------c-ccccCCCCCCCCCC
Q 012478 330 GGRIPSPGSMPSFQEIKETLGFNTYYEEEKRYATSM------------------RRLS------S-ENVTSNSYDTQPMA 384 (462)
Q Consensus 330 ~g~~~~~~~~~s~~e~~~lvg~~~~~~~e~~y~~~~------------------~~~~------~-~~~~~~~~~~~~~~ 384 (462)
+|.....+. ....+|.+.++|.-|. .+..|.++. .+.+ + .-..+..|.+|..+
T Consensus 326 eG~y~~~gs-a~q~~I~rai~fApy~-d~~w~et~~pd~~eakeFsegv~~~~pd~m~ay~~sPsfn~~~a~~~~~Q~~~ 403 (492)
T KOG1260|consen 326 EGRYRFKGS-AIQEEIGRAIAFAPYA-DLIWMETSYPDRQEAKEFSEGVKKQYPDSMLAYNFSPSFNWKKAGFSDEQLVA 403 (492)
T ss_pred CceecCCCc-hHHHHHHHHHccCchh-hhhhhhcCCCCHHHHHHHHHHhhhcChhhHhhhcCCCCCCcccccCCHHHHHh
Confidence 998877666 5678888888888773 233332211 1111 1 12233566677777
Q ss_pred cchhhhhcCCCCCCeeEeeCccccccCCCCCCCCCCCccceeEEEEEEecCCCceeeccccc-----ccccchhccccCC
Q 012478 385 QDDTARRGQSSQDPIVEVITPEVYTNSGAGGSRDAFSGIWSRTLRVKITGRDGFEKLDVRIP-----AGFLDGITNVVPG 459 (462)
Q Consensus 385 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 459 (462)
-+|..++ .+-+++||||..|+ ..++||.-+|++-++.+|.|+||+||+||++| +++.+|+.+++-+
T Consensus 404 f~~~l~~----~G~~~q~itla~~~-----~~~~a~~d~~~~~k~dGi~~y~~~E~~dv~~hq~~~~~eyfd~l~~lvqg 474 (492)
T KOG1260|consen 404 FDDDLGK----MGFILQVITLAGLH-----ANRNAFVDLSNIFKKDGIKGYDGREKTDVKKHQEPSGTEYFDGLSRLVQG 474 (492)
T ss_pred hhhhHhh----cCeEEEEeehhHhc-----ccchhHHHHHHHHHhcccccccccchhhhhhhhhhhhHHHHHHHHHHHhc
Confidence 7777777 78899999999998 89999999999999999999999999999997 4567888777654
No 11
>TIGR01346 isocit_lyase isocitrate lyase. Isocitrate lyase and malate synthase are the enzymes of the glyoxylate shunt, a pathway associated with the TCA cycle.
Probab=100.00 E-value=7.9e-47 Score=397.16 Aligned_cols=276 Identities=28% Similarity=0.343 Sum_probs=241.7
Q ss_pred hhhcccC-CCCceeeccccc-------CCCccccc--cCchHHHHHHHHhCC----CceEecccCChHHHHHHHHhCCcE
Q 012478 47 LLLNTAT-NPGTINRTRVYR-------KNSTGVEA--CLSPAKSLRQILELP----GVHQGPACFDALSAKLVEKSGFSF 112 (462)
Q Consensus 47 ~~~~~~~-~Pr~~~~~R~y~-------rgs~~~~~--a~~~a~~LR~ll~~~----~~iv~p~ayDalSArl~e~aGfda 112 (462)
.+++||. +|||+||+|||+ |||+.+++ +...+++||++|++. .++..+||||+.+|.+++++ |++
T Consensus 3 ~i~~~w~~~pR~~~i~RpYta~dVv~lRGs~~~~~~~s~~~a~kLw~ll~~~~~~~~~~~tlGAld~~qa~q~~ka-l~a 81 (527)
T TIGR01346 3 EIQKWWDTNPRWNGTTRPYTARDVADLRGSVIPEHYLSRRMAEKLWRALTQHGDNKTYSNTFGALDPVQASQMAKY-LDA 81 (527)
T ss_pred hhhhhhccCccccCCcCCCCHHHHHHHcCCCCCccChHHHHHHHHHHHHHHhhhcCCceeeccccCHHHHHHHHHH-hhh
Confidence 4677885 999999999998 99999665 888999999999864 78999999999999999999 999
Q ss_pred EEeccHHHHhhh----ccCCCCCCCCHHHHHHHHHHHHhh---------------------------cCCcEEEeCCCCC
Q 012478 113 CFTSGFSISAAR----LALPDTGFISYGEMVDQGQLITQA---------------------------VSIPVIGDGDNGY 161 (462)
Q Consensus 113 I~vSG~avSas~----lG~PD~g~vsl~Eml~~~~~I~ra---------------------------~~iPVIaD~DtGy 161 (462)
||+|||++|++. .++||.+.+++++++..+++|.++ ..+|||||+|+||
T Consensus 82 IY~SGwq~Sa~~~~~~e~~PD~s~yp~~tVp~~V~~i~~aq~~hDr~q~~~~~~~~~~~r~~~~~~D~~iPIiaD~DtGy 161 (527)
T TIGR01346 82 IYLSGWQCSSTANTSNEPGPDLADYPADTVPNKVEHLFNAQLFHDRKQREARDTSVDNERSKTPYIDYLVPIVADGDAGF 161 (527)
T ss_pred eehhHHHHHhhhcccCCCCCCcccccccccHHHHHHHHHHHHHHHHHHHHhccccchhhhccccccccccceEEECCCCC
Confidence 999999999753 399999999999999999999776 5699999999999
Q ss_pred CCHHHHHHHHHHHHHhCccEEEeCCCCC-CCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhh-----
Q 012478 162 GNAMNVKRTVKGYIKAGFAGIILEDQVS-PKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQ----- 235 (462)
Q Consensus 162 G~~~nv~rtVk~l~~AGaaGI~IEDq~~-PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~----- 235 (462)
|++.+++++|++|+++||+|||||||.. ||+|||++||+|+|++|+++||+||+.+++.+|.+|+||||||+.+
T Consensus 162 G~~~~v~~~vk~~ieaGAaGI~IEDq~~~~KkcGh~~gk~Lvp~~e~v~RI~AAr~Aad~~g~d~vI~ARTDA~~A~Lit 241 (527)
T TIGR01346 162 GGATAVFKLQKAFIERGAAGVHWEDQLSSEKKCGHMAGKVLIPVQEHVNRLVAARLAADIMGVPTLVVARTDAEAATLIT 241 (527)
T ss_pred CCcHHHHHHHHHHHHcCCeEEEEEcCCCcccccCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEEecCcccccccc
Confidence 9999999999999999999999999984 9999999999999999999999999999998899999999999911
Q ss_pred --------------------------------------------------------------------------------
Q 012478 236 -------------------------------------------------------------------------------- 235 (462)
Q Consensus 236 -------------------------------------------------------------------------------- 235 (462)
T Consensus 242 S~iD~rDh~fI~G~tn~~~~~l~~~l~~a~a~~~~Gad~~~~e~~W~~~a~l~tf~eav~~~i~~~~~~~~~~~~~~~~~ 321 (527)
T TIGR01346 242 SDVDERDHPFITGATNPNLKPLADVLARAMASGKSGADLQAVEDEWMAMADLKLFSDCVVDGIKALNVSEKGRRLGEWMQ 321 (527)
T ss_pred ccCCcccchhhcCCCCCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCccHHHHHHHHHhhccccchHHHHHHHHh
Confidence
Q ss_pred -----------------------------------------cccHHHHHHHHHHhHhcCCcEEEecC-CCCHHHHHHHHH
Q 012478 236 -----------------------------------------ALSLEESLRRSRAFADAGADVLFIDA-LASKEEMKAFCE 273 (462)
Q Consensus 236 -----------------------------------------~~gldeAI~RakAy~eAGAD~Ifie~-~~s~eei~~i~~ 273 (462)
..|++.||.|+.+|+- .||+|++|. .++.+++++|++
T Consensus 322 ~~~~~~~~s~~~~r~~A~~~~~~~~~fdwd~~Rt~EG~Y~~k~G~~~aI~R~~a~AP-yaDliW~ET~~Pdl~~A~~Fa~ 400 (527)
T TIGR01346 322 QTNTGNVLSYYQAKELAEKLGISNLFWDWDLPRTREGFYRVKGGLEPAIARAKAFAP-YADLIWMETSTPDLELAKKFAE 400 (527)
T ss_pred hcccccccchHHHHHHHHHhcCCCCcccCCCCcCCCcceeecCChHHHHHHHHhcCc-cccEEEecCCCCCHHHHHHHHH
Confidence 0146788999999976 799999997 588999999987
Q ss_pred hC----CCCceeeeeeecCCCCCCCC-------------HHHHHhcCCCEEeccchHHHHHHHHHHHHHHHHHc
Q 012478 274 IS----PLVPKMANMLEGGGKTPILN-------------PLELEELGFKLVAYPLSLIGVSVRAMQDALTAIKG 330 (462)
Q Consensus 274 ~v----~~vP~~~N~l~~~g~tP~ls-------------~~eL~~lGv~~V~yp~~ll~aa~~Am~~~l~~l~~ 330 (462)
.+ |+..+..|. +|.+. ..||.+|||+.-.+.+..+.....+|.+..+..++
T Consensus 401 ~v~~~~P~k~LaYN~------SPSFNW~~~~~d~~~~~F~~~L~~lGy~~QfITLaG~H~~~~~~~~lA~~y~~ 468 (527)
T TIGR01346 401 GVKSKFPDQLLAYNL------SPSFNWSAHMEDDEIAKFIQELGDLGYKWQFITLAGFHSLALGMFDFAYDFAQ 468 (527)
T ss_pred HHHHHCCCCeEEecC------CCCccccccCCHHHHHHHHHHHHhcCceEEEEehHhhhhhHHHHHHHHHHHHH
Confidence 54 443344443 44442 57899999999999999999888888888888864
No 12
>COG2224 AceA Isocitrate lyase [Energy production and conversion]
Probab=100.00 E-value=9.5e-46 Score=377.03 Aligned_cols=286 Identities=26% Similarity=0.363 Sum_probs=249.3
Q ss_pred cchhhhhhcccCCCCceeeccccc-------CCCccccc--cCchHHHHHHHHhC---CCceEecccCChHHHHHHHHhC
Q 012478 42 TNTNTLLLNTATNPGTINRTRVYR-------KNSTGVEA--CLSPAKSLRQILEL---PGVHQGPACFDALSAKLVEKSG 109 (462)
Q Consensus 42 ~~~~~~~~~~~~~Pr~~~~~R~y~-------rgs~~~~~--a~~~a~~LR~ll~~---~~~iv~p~ayDalSArl~e~aG 109 (462)
.....++++||++|||+||+|+|+ |||++++| +...+.+||++|++ +..+...||||+..|..+.++|
T Consensus 6 e~~~~~~~~w~~~~rw~~I~R~YsA~dVv~lrgs~~~~~~~a~~~A~kl~~ll~e~~~~~~~~tlGal~g~qa~Q~~kag 85 (433)
T COG2224 6 EQEEALEQEWWEDPRWKGIKRPYSAEDVVKLRGSVPIEYTLARLGAAKLWELLHELFKEKYVNTLGALTGGQAVQMAKAG 85 (433)
T ss_pred HHHHHHHHhhccCCCcccCCCCccHHHHHHHhCCCCcCccHHHHHHHHHHHHHHHhccccchhccccCCHHHHHHHHHhh
Confidence 456788999999999999999998 99999999 77789999999988 7788999999999999999999
Q ss_pred CcEEEeccHHHHh--hhc--cCCCCCCCCHHHHHHHHHHHHhh--------------------cC--CcEEEeCCCCCCC
Q 012478 110 FSFCFTSGFSISA--ARL--ALPDTGFISYGEMVDQGQLITQA--------------------VS--IPVIGDGDNGYGN 163 (462)
Q Consensus 110 fdaI~vSG~avSa--s~l--G~PD~g~vsl~Eml~~~~~I~ra--------------------~~--iPVIaD~DtGyG~ 163 (462)
.++||+|||.+++ +.. -+||..+++++.+...+++|.++ ++ +|||||+|.|||+
T Consensus 86 l~aiYlSGWqvaa~~n~~~~~~PDqs~Yp~~sVP~~V~rI~~al~~aD~~q~~~~~~~~~~~~~Dy~~PIiADadaGfGg 165 (433)
T COG2224 86 IKAIYLSGWQVAADANLAGEMYPDQSLYPANSVPDVVKRINNALRRADQIQWSEGKGPGDRQAVDYFLPIVADAEAGFGG 165 (433)
T ss_pred hheEEeccceeeccccccCCCCCCcccCccccccHHHHHHHHHHHHHHHHHHHhccccccccccccccceeeccccCCCc
Confidence 9999999999983 233 48999999999999999988653 12 7999999999999
Q ss_pred HHHHHHHHHHHHHhCccEEEeCCCC-CCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhc------
Q 012478 164 AMNVKRTVKGYIKAGFAGIILEDQV-SPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQA------ 236 (462)
Q Consensus 164 ~~nv~rtVk~l~~AGaaGI~IEDq~-~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~------ 236 (462)
+.|+++..|+|+|+||+|||||||. ..|+|||++||.|||.+|++.||.|++-+.+.+|.+.+|+||||+.++
T Consensus 166 ~~~~~~L~K~~IEaGaagiH~EDQ~a~~KkCGH~gGkVlVPt~e~i~rL~AaRla~Dvmgv~tvlvARTDa~aA~Lits~ 245 (433)
T COG2224 166 PLNAFELMKAMIEAGAAGVHFEDQLASEKKCGHLGGKVLVPTQEAIRRLNAARLAADVMGVPTILVARTDAEAADLITSD 245 (433)
T ss_pred hHHHHHHHHHHHHhCCceeehhhhcccccccccCCCeEeccHHHHHHHHHHHHHHHHHhCCCceEEEecchhhccccccc
Confidence 9999999999999999999999998 689999999999999999999999999999999999999999999752
Q ss_pred ----------------------ccHHHHHHHHHHhHhcCCcEEEecC-CCCHHHHHHHHHhCCCCceeeeeeecCCCCCC
Q 012478 237 ----------------------LSLEESLRRSRAFADAGADVLFIDA-LASKEEMKAFCEISPLVPKMANMLEGGGKTPI 293 (462)
Q Consensus 237 ----------------------~gldeAI~RakAy~eAGAD~Ifie~-~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ 293 (462)
.+++.+|+|+.+|+--| |+|++|. .++.+++++|++.+..+ .|--|+.. +.+|.
T Consensus 246 ~D~~d~~fi~~~Rt~eG~y~~k~Gie~aI~r~lA~Apya-Dl~W~ET~~Pdle~ak~Fae~Ih~~-~P~~~LaY-N~SPS 322 (433)
T COG2224 246 VDPSDGEFITGERTSEGFYRTKGGIEQAIARGLAYAPYA-DLLWCETSTPDLEEARQFAEAIHAK-YPGKLLAY-NCSPS 322 (433)
T ss_pred CCcccCCccCCCcCCCceeeecCchHHHHHHHHhcCccc-ceEEEecCCCCHHHHHHHHHHHHHh-CCcceeee-cCCCC
Confidence 26899999999999987 9999985 58899999999875421 12223332 34554
Q ss_pred CC-------------HHHHHhcCCCEEeccchHHHHHHHHHHHHHHHHHc
Q 012478 294 LN-------------PLELEELGFKLVAYPLSLIGVSVRAMQDALTAIKG 330 (462)
Q Consensus 294 ls-------------~~eL~~lGv~~V~yp~~ll~aa~~Am~~~l~~l~~ 330 (462)
+. ..||.++||+.-.++...+.....+|.+.....+.
T Consensus 323 FNW~~~~~de~i~~Fq~el~~mG~~fqfITlag~H~~~~s~~elA~~y~~ 372 (433)
T COG2224 323 FNWKKNLDDETIAKFQQELGKMGYKFQFITLAGFHSLNYSMFELARAYAQ 372 (433)
T ss_pred cCcccccCHHHHHHHHHHHHhheeeEEEEechhhhhhhhhHHHHHHHHHH
Confidence 42 47899999999988888899888999888887765
No 13
>PLN02892 isocitrate lyase
Probab=100.00 E-value=2e-43 Score=373.21 Aligned_cols=285 Identities=22% Similarity=0.272 Sum_probs=241.1
Q ss_pred hhhhhhcccCCCCceeeccccc-------CCCccccc-cCchHHHHHHHHhCC----CceEecccCChHHHHHHHHhCCc
Q 012478 44 TNTLLLNTATNPGTINRTRVYR-------KNSTGVEA-CLSPAKSLRQILELP----GVHQGPACFDALSAKLVEKSGFS 111 (462)
Q Consensus 44 ~~~~~~~~~~~Pr~~~~~R~y~-------rgs~~~~~-a~~~a~~LR~ll~~~----~~iv~p~ayDalSArl~e~aGfd 111 (462)
....+++||.+|||+||+|||+ |||++++| +...+++||++|++. .++...||.|+..|..+.+ |.+
T Consensus 21 ~v~~ie~~w~~pR~~~ikRpYta~dV~~lRGs~~~~y~s~~~A~kLw~lL~~~~~~~~~~~t~Galdp~Q~~Qm~k-~l~ 99 (570)
T PLN02892 21 EVAEVEAWWRSERFKLTRRPYSARDVAALRGTLKQSYASNEMAKKLWRTLKTHQANGTASRTFGALDPVQVAQMAK-HLD 99 (570)
T ss_pred HHHHHHHhhcChhhcCCcCCCCHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHhhccCCceeeccCCcHHHHHHHHc-cCc
Confidence 3455789999999999999998 99999999 888899999999865 6889999999999999888 999
Q ss_pred EEEeccHHHHhhh----ccCCCCCCCCHHHHHHHHHHHHhh-------------------------cC--CcEEEeCCCC
Q 012478 112 FCFTSGFSISAAR----LALPDTGFISYGEMVDQGQLITQA-------------------------VS--IPVIGDGDNG 160 (462)
Q Consensus 112 aI~vSG~avSas~----lG~PD~g~vsl~Eml~~~~~I~ra-------------------------~~--iPVIaD~DtG 160 (462)
+||+|||++|++. --+||..+++++.+...+++|.++ .+ +|||||+|+|
T Consensus 100 ~iYvSGWq~ss~a~t~~e~~PD~adYP~~tVP~~V~ri~~Aq~~hDr~q~~~r~~~~~~~r~~~~~~Dyl~PIiADaEtG 179 (570)
T PLN02892 100 TIYVSGWQCSSTATSTNEPGPDLADYPMDTVPNKVEHLFFAQLYHDRKQREARMSMSREERARTPYVDYLKPIIADGDTG 179 (570)
T ss_pred eEEechhhhcCccccCCCCCCCcccCccccccHHHHHHHHHHHHHHHHHHHHHhccCHHHhcCCCccccccceeeecCCC
Confidence 9999999998752 368999999999999998888542 23 8999999999
Q ss_pred CCCHHHHHHHHHHHHHhCccEEEeCCCC-CCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcc--
Q 012478 161 YGNAMNVKRTVKGYIKAGFAGIILEDQV-SPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQAL-- 237 (462)
Q Consensus 161 yG~~~nv~rtVk~l~~AGaaGI~IEDq~-~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~-- 237 (462)
||+..+++++|++|+++||+|||||||. +||+|||++||.|+|.+++++||+|++.+.+.+|++|+|+||||+.++.
T Consensus 180 yG~~~~~~~~vk~~ieaGAaGIhIEDQ~~~~KkCGh~~gk~Lvp~~e~v~RI~AAR~aad~~G~d~vI~ARTDA~~a~Li 259 (570)
T PLN02892 180 FGGTTATVKLCKLFVERGAAGVHIEDQSSVTKKCGHMGGKVLVATSEHINRLVAARLQFDVMGVETVLVARTDAVAATLI 259 (570)
T ss_pred CCccHHHHHHHHHHHHcCCeEEEEECCCCcccccCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhcccc
Confidence 9999998999999999999999999998 7999999999999999999999999999999899999999999996320
Q ss_pred --------------------------------------------------------------------------------
Q 012478 238 -------------------------------------------------------------------------------- 237 (462)
Q Consensus 238 -------------------------------------------------------------------------------- 237 (462)
T Consensus 260 ts~iD~RDh~FI~Gat~~~~~~~~l~~~~~~a~~~g~~g~~l~~~e~~W~~~a~l~tf~eav~~~i~~~~~~~~~~~~~~ 339 (570)
T PLN02892 260 QSNIDARDHQFILGATNPALRGKPLATLLAEAMAAGKSGAELQAIEDEWLAQAQLMTFSEAVADAIKSMNISENEKRRRL 339 (570)
T ss_pred hhhhccccccceeeecCCccccCCHHHHHHHHHHcCCChhHHHHHHHHHHHHcCCccHHHHHHHHHHhcccccchhHHHH
Confidence
Q ss_pred ----------------------------------------------cHHHHHHHHHHhHhcCCcEEEecC-CCCHHHHHH
Q 012478 238 ----------------------------------------------SLEESLRRSRAFADAGADVLFIDA-LASKEEMKA 270 (462)
Q Consensus 238 ----------------------------------------------gldeAI~RakAy~eAGAD~Ifie~-~~s~eei~~ 270 (462)
|++-+|.|+.+|+- +||+|++|. .++.+++++
T Consensus 340 ~~~~~~~~~~~s~~e~r~lA~~~~~~~v~fdwd~~Rt~EG~Y~~k~G~~~aI~R~~A~AP-yaDliW~ET~~Pdl~~A~~ 418 (570)
T PLN02892 340 NEWMASVPKCLSNEQARRIAAKLGVANVFWDWDLPRTREGFYRFRGSVKACIVRGRAFAP-YADLIWMETASPDLAEATK 418 (570)
T ss_pred HHHHhhccccCCHHHHHHHHHHhCCCCCcccCCCCcCcccceeeCCChHHHHHHHHhccc-ccCEEEecCCCCCHHHHHH
Confidence 24557899999965 899999997 588899999
Q ss_pred HHHh----CCCCceeeeeeecCC-CCCCCC-------HHHHHhcCCCEEeccchHHHHHHHHHHHHHHHHHc
Q 012478 271 FCEI----SPLVPKMANMLEGGG-KTPILN-------PLELEELGFKLVAYPLSLIGVSVRAMQDALTAIKG 330 (462)
Q Consensus 271 i~~~----v~~vP~~~N~l~~~g-~tP~ls-------~~eL~~lGv~~V~yp~~ll~aa~~Am~~~l~~l~~ 330 (462)
|++. +|...+..|..+.-. +...++ ..||.+|||..-.+.+..+.....+|.+..+.+++
T Consensus 419 Fa~~V~~~~P~k~LaYNlSPSFNW~~~g~~d~~i~~F~~dLaklGy~~QfITLaG~H~~~~~~~~lA~~~~~ 490 (570)
T PLN02892 419 FAEGVKAKHPEIMLAYNLSPSFNWDASGMTDEQMAEFIPRLARLGYCWQFITLAGFHANALVVDTFARDYAR 490 (570)
T ss_pred HHHHHHHhCCCCeeeecCCCCcCCCCCCCCHHHHHHHHHHHHhcCceEEEEchHhhhhhHHHHHHHHHHHHH
Confidence 9875 454444555432100 111122 37899999999999999999888888888887764
No 14
>PF00463 ICL: Isocitrate lyase family; InterPro: IPR000918 Isocitrate lyase (4.1.3.1 from EC) [, ] is an enzyme that catalyzes the conversion of isocitrate to succinate and glyoxylate. This is the first step in the glyoxylate bypass, an alternative to the tricarboxylic acid cycle in bacteria, fungi and plants. A cysteine, a histidine and a glutamate or aspartate have been found to be important for the enzyme's catalytic activity. Only one cysteine residue is conserved between the sequences of the fungal, plant and bacterial enzymes; it is located in the middle of a conserved hexapeptide. Other enzymes also belong to this family including carboxyvinyl-carboxyphosphonate phosphorylmutase (2.7.8.23 from EC) which catalyses the conversion of 1-carboxyvinyl carboxyphosphonate to 3-(hydrohydroxyphosphoryl) pyruvate carbon dioxide, and phosphoenolpyruvate mutase (5.4.2.9 from EC), which is involved in the biosynthesis of phosphinothricin tripeptide antiobiotics. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1IGW_D 3P0X_B 3EOL_B 3E5B_B 3OQ8_D 3LG3_A 3I4E_D 1F8I_B 1F8M_D 1F61_A ....
Probab=100.00 E-value=1e-40 Score=350.10 Aligned_cols=277 Identities=27% Similarity=0.356 Sum_probs=209.3
Q ss_pred hhhhcccCCCCceeeccccc-------CCCccccc-cCchHHHHHHHHhCC----CceEecccCChHHHHHHHHhCCcEE
Q 012478 46 TLLLNTATNPGTINRTRVYR-------KNSTGVEA-CLSPAKSLRQILELP----GVHQGPACFDALSAKLVEKSGFSFC 113 (462)
Q Consensus 46 ~~~~~~~~~Pr~~~~~R~y~-------rgs~~~~~-a~~~a~~LR~ll~~~----~~iv~p~ayDalSArl~e~aGfdaI 113 (462)
..+++||++|||+||+|+|+ |||+++.| +...+++|+++|++. .+...-|+.|+.....+. +|+++|
T Consensus 3 ~~i~~ww~~pR~~~i~R~Yta~dV~~~Rgs~~~~y~s~~~a~kLw~ll~~~~~~~~~~~t~g~~~p~~~~q~~-~~l~~i 81 (526)
T PF00463_consen 3 EEIEKWWASPRWKGIKRPYTAEDVVKLRGSLPIEYPSSIQAKKLWKLLEEHFKNGYVSHTGGATDPQQVQQMA-KGLEAI 81 (526)
T ss_dssp HHHHHHHTSGGGTT---SS-HHHHHHHTTSS---HHHHHHHHHHHHHHHHTSSSSSEEEEBBSSHHHHHHHHH-CT-SSE
T ss_pred HHHHHHhcCccccCCCCCCCHHHHHHhccCCCCCChHHHHHHHHHHHHHhhhhcCCcceecccccHHHHHHHH-hcCCeE
Confidence 46788999999999999998 99999888 888999999999863 467788999999988886 599999
Q ss_pred EeccHHHHhhh----ccCCCCCCCCHHHHHHHHHHHHhh-------------------------cC--CcEEEeCCCCCC
Q 012478 114 FTSGFSISAAR----LALPDTGFISYGEMVDQGQLITQA-------------------------VS--IPVIGDGDNGYG 162 (462)
Q Consensus 114 ~vSG~avSas~----lG~PD~g~vsl~Eml~~~~~I~ra-------------------------~~--iPVIaD~DtGyG 162 (462)
|+|||++|+.. --+||.++++++.+...+++|.++ ++ .|||||+|+|||
T Consensus 82 YvSGWq~ss~~s~~~e~~PD~s~YP~~tVP~~V~ri~~aq~~~D~~q~~~~~~~~~~~r~~~~~~Dyl~PIIADad~GfG 161 (526)
T PF00463_consen 82 YVSGWQCSSDASTSNEPYPDQSDYPYDTVPNKVERIFNAQLRHDRKQWEERLSMTKEERAKTPYIDYLRPIIADADAGFG 161 (526)
T ss_dssp EE-HHHHHHHS-TT-S--SSSS-S-TTHHHHHHHHHHHHHHHHHHHHHHCTCSTTSTTHTTS--S-SS--EEEE-TTTSS
T ss_pred EeeceeeecccccCCCCCCcccccccccccHHHHHHHHHHHHHHHHHHHhcccccchhhcccCcccceeeeeeccccCCC
Confidence 99999998532 358999999999999999998653 12 899999999999
Q ss_pred CHHHHHHHHHHHHHhCccEEEeCCCC-CCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhc-----
Q 012478 163 NAMNVKRTVKGYIKAGFAGIILEDQV-SPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQA----- 236 (462)
Q Consensus 163 ~~~nv~rtVk~l~~AGaaGI~IEDq~-~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~----- 236 (462)
++.++++++|.|+|+||+|||||||. ..|||||++||.|||.+|++.||.|++.+.+.||.+.+|+||||+.++
T Consensus 162 G~~~v~kL~K~fiEaGaAgiH~EDQ~~~~KKCGH~~GKVlVPt~e~i~rL~AaRl~~Dimg~~~liiARTDa~~A~Lits 241 (526)
T PF00463_consen 162 GLTAVMKLTKLFIEAGAAGIHFEDQLSGEKKCGHMGGKVLVPTSEHINRLVAARLQADIMGVPTLIIARTDAEAATLITS 241 (526)
T ss_dssp SHHHHHHHHHHHHHHT-SEEEEESB-GGG-B-STTSBEEE--HHHHHHHHHHHHHHHHHHT---EEEEEE-TTTEEEES-
T ss_pred CHHHHHHHHHHHHhcCCceechhhccccccceeccCCcEEecHHHHHHHHHHHHHHHHHhCCCcEEEEeechhhhccccc
Confidence 99999999999999999999999998 589999999999999999999999999999999999999999999631
Q ss_pred --------------------------------------------------------------------------------
Q 012478 237 -------------------------------------------------------------------------------- 236 (462)
Q Consensus 237 -------------------------------------------------------------------------------- 236 (462)
T Consensus 242 ~iD~rDh~fi~G~~~~~~~pl~~~l~~ae~~G~~g~ei~~~E~~W~~~A~L~TFdEAV~~~i~~~~~~~k~~~~~~~~~~ 321 (526)
T PF00463_consen 242 DIDPRDHPFILGATNPEVKPLAEVLAEAEAAGASGAEIQAIEDEWYKKAGLMTFDEAVEDAIKASEYSNKKSRIEEYLSK 321 (526)
T ss_dssp TTSCCCGGGEEEEE-TTS--HHHHHHHHHHS---SHHHHHHHHHHHHHS-EE-SHHHHHHHHHTSS-S-HHHHHHHHHHH
T ss_pred CccccccchhcCCCCCCCccHHHHHHHHHHcCCChHHHHHHHHHHHHcCCeeEHHHHHHHHHHhccccchHHHHHHHHHH
Confidence
Q ss_pred -----------------------------------------ccHHHHHHHHHHhHhcCCcEEEecC-CCCHHHHHHHHHh
Q 012478 237 -----------------------------------------LSLEESLRRSRAFADAGADVLFIDA-LASKEEMKAFCEI 274 (462)
Q Consensus 237 -----------------------------------------~gldeAI~RakAy~eAGAD~Ifie~-~~s~eei~~i~~~ 274 (462)
.+++-+|.|+.+|+ -.||+|++|. .++.+++++|++.
T Consensus 322 ~~~~~~~S~~eaR~lAk~l~g~~vfFDWD~pRt~EG~Y~~k~g~~~aI~Ra~A~a-PyADllW~ET~~Pd~~~a~~Fa~~ 400 (526)
T PF00463_consen 322 VKGKSFLSLREARALAKELLGKDVFFDWDAPRTREGYYRFKGGTEAAIARALAFA-PYADLLWMETKTPDLAQAKEFAEG 400 (526)
T ss_dssp HTT--HH---HHHHHHHHHHSS--GBBTTTCE-TTS-EEE--SHHHHHHHHHHHG-GG-SEEEE--SS--HHHHHHHHHH
T ss_pred ccccCcccHHHHHHHHHHhcCCCceEecccccChhhchhcCCChHHHHHHHHhhC-cccCeeeEecCCCCHHHHHHHHHH
Confidence 03677899999886 6799999996 4788899988865
Q ss_pred ----CCCCceeeeeeecCCCCCCCC-------------HHHHHhcCCCEEeccchHHHHHHHHHHHHHHHHHc
Q 012478 275 ----SPLVPKMANMLEGGGKTPILN-------------PLELEELGFKLVAYPLSLIGVSVRAMQDALTAIKG 330 (462)
Q Consensus 275 ----v~~vP~~~N~l~~~g~tP~ls-------------~~eL~~lGv~~V~yp~~ll~aa~~Am~~~l~~l~~ 330 (462)
+|..-+..|.. |.+. ..+|.++||..-.+++..+.....+|.+..+..+.
T Consensus 401 V~~~~P~k~LaYNlS------PSFNW~~~~~~~ei~~F~~dLak~G~~~QfItLaG~H~~~~~~~~lAk~y~~ 467 (526)
T PF00463_consen 401 VHAVYPGKKLAYNLS------PSFNWDAAGSDDEIKSFQWDLAKLGYVWQFITLAGFHSLALSMFELAKDYKK 467 (526)
T ss_dssp HHHHSTT-EEEEEE-------SSSTHHHHS-HHHHHHHHHHHHHTTEEEEEETTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCCcceEEecCC------cccchhhhhhhhHHHHHHHHHHhhhHheeeeeHHHHHHhHHHHHHHHHHHHH
Confidence 45433455543 4331 36899999999999999999999999988888865
No 15
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=100.00 E-value=1.6e-40 Score=324.26 Aligned_cols=180 Identities=17% Similarity=0.163 Sum_probs=162.6
Q ss_pred HHHHHHhCCCceEecccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcC-CcEEEeCC
Q 012478 80 SLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVS-IPVIGDGD 158 (462)
Q Consensus 80 ~LR~ll~~~~~iv~p~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~-iPVIaD~D 158 (462)
.|++++++++++++|||||++||++++++|||+||+||++.+ +.+|+||++.+|++||++|+++|++++. +|||+|+|
T Consensus 3 ~~~~~~~~~~~i~~~~ayD~~sA~i~e~aG~dai~v~~s~~a-~~~G~pD~~~vtl~em~~~~~~I~r~~~~~pviaD~~ 81 (240)
T cd06556 3 LLQKYKQEKERFATLTAYDYSMAKQFADAGLNVMLVGDSQGM-TVAGYDDTLPYPVNDVPYHVRAVRRGAPLALIVADLP 81 (240)
T ss_pred hHHHHHhCCCeEEEecCCCHHHHHHHHHcCCCEEEEChHHHH-HhcCCCCCCCcCHHHHHHHHHHHHhhCCCCCEEEeCC
Confidence 467777778999999999999999999999999999998886 5799999999999999999999999996 79999999
Q ss_pred CCCCCH-HHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhh--
Q 012478 159 NGYGNA-MNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQ-- 235 (462)
Q Consensus 159 tGyG~~-~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~-- 235 (462)
+|||+. +++.+++++|+++||+|||||||. +++++|++++++. |+|+||||+..
T Consensus 82 ~G~g~~~~~~~~~~~~l~~aGa~gv~iED~~-----------------~~~~~i~ai~~a~------i~ViaRtd~~pq~ 138 (240)
T cd06556 82 FGAYGAPTAAFELAKTFMRAGAAGVKIEGGE-----------------WHIETLQMLTAAA------VPVIAHTGLTPQS 138 (240)
T ss_pred CCCCcCHHHHHHHHHHHHHcCCcEEEEcCcH-----------------HHHHHHHHHHHcC------CeEEEEeCCchhh
Confidence 999864 899999999999999999999983 6888999988762 89999999842
Q ss_pred -------------cccHHHHHHHHHHhHhcCCcEEEecCCCCHHHHHHHHHhCCCCceeeeee
Q 012478 236 -------------ALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANML 285 (462)
Q Consensus 236 -------------~~gldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~l 285 (462)
..+++++|+||++|++||||+||+|++ +.+++++|+++++ +|+..|..
T Consensus 139 ~~~~gg~~~~~~~~~~~~~ai~Ra~ay~~AGAd~i~~e~~-~~e~~~~i~~~~~-~P~~~~ga 199 (240)
T cd06556 139 VNTSGGDEGQYRGDEAGEQLIADALAYAPAGADLIVMECV-PVELAKQITEALA-IPLAGIGA 199 (240)
T ss_pred hhccCCceeeccCHHHHHHHHHHHHHHHHcCCCEEEEcCC-CHHHHHHHHHhCC-CCEEEEec
Confidence 246899999999999999999999999 8899999999986 67766644
No 16
>PRK06498 isocitrate lyase; Provisional
Probab=100.00 E-value=7.3e-39 Score=333.50 Aligned_cols=279 Identities=23% Similarity=0.241 Sum_probs=223.5
Q ss_pred ccCCCCceeeccccc---C--CCccccc--cCchHHHHHHHHhC-----CCceEecccCChHHHHHHHHh---CC-----
Q 012478 51 TATNPGTINRTRVYR---K--NSTGVEA--CLSPAKSLRQILEL-----PGVHQGPACFDALSAKLVEKS---GF----- 110 (462)
Q Consensus 51 ~~~~Pr~~~~~R~y~---r--gs~~~~~--a~~~a~~LR~ll~~-----~~~iv~p~ayDalSArl~e~a---Gf----- 110 (462)
...+|||+||.--+. | |++.+++ +...+++||++++. ...+...|||++..|...-++ ||
T Consensus 16 ~~~~~~w~~i~~e~v~rlr~q~~~~~~~~iA~~~a~~~~~~m~~yd~d~~~y~~slGa~~g~~a~Q~~~a~k~~~~~t~~ 95 (531)
T PRK06498 16 EKQGSTWNAINPESAARMRLQNRFKTGLDIAKYTAKIMRADMAAYDADSSKYTQSLGCWHGFIAQQKMISIKKHFGTTKR 95 (531)
T ss_pred hhcCCCCCCCCHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHhhcccchhhhhhhcCCcHHHHHHHHHHHHhccCCCcc
Confidence 345899999944333 6 9999998 89999999999987 557889999999999888888 99
Q ss_pred cEEEeccHHHHhhh--c-cCCCCCCCCHHHHHHHHHHHHhh---------------------------------------
Q 012478 111 SFCFTSGFSISAAR--L-ALPDTGFISYGEMVDQGQLITQA--------------------------------------- 148 (462)
Q Consensus 111 daI~vSG~avSas~--l-G~PD~g~vsl~Eml~~~~~I~ra--------------------------------------- 148 (462)
++||+|||.+|+.. . -+||..+++.+.+...+++|-.+
T Consensus 96 ~~iYlSGW~vAa~~n~~g~~PDqS~yp~~sVP~lv~~i~~~l~~AD~~~~~~lf~~~~~a~~~g~~~~~~~~~~~~d~~~ 175 (531)
T PRK06498 96 RYLYLSGWMVAALRSEFGPLPDQSMHEKTSVPALIEELYTFLRQADARELNDLFRELDAAREAGDKAKEAAIQAKIDNFE 175 (531)
T ss_pred ceEEehhhHHHhhhhccCCCCCcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhhcccccc
Confidence 99999999998743 2 48999999988777766666221
Q ss_pred -cCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCC-CCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCC-Ce
Q 012478 149 -VSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVS-PKGCGHTRGRKVVSREEAVMRIKAAVDARKESGS-DI 225 (462)
Q Consensus 149 -~~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~-PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~-d~ 225 (462)
.-+|||||+|+|||+++|+++++|+|+++||+|||||||++ ||+|||++||.|||.+||+.||+||+.|++++|. ||
T Consensus 176 ~~~iPIIADaDtGfG~~~nv~r~vk~~ieAGAAgIhIEDQv~~~KkCGHl~GK~lVp~ee~i~KI~AAr~A~d~~G~~D~ 255 (531)
T PRK06498 176 THVVPIIADIDAGFGNEEATYLLAKKMIEAGACCIQIENQVSDEKQCGHQDGKVTVPHEDFLAKIRAVRYAFLELGVDDG 255 (531)
T ss_pred ccccceEEEcCCCCCcHHHHHHHHHHHHHhCCeEEEEecCCCCCCCCCCCCCCEeccHHHHHHHHHHHHHHHHhcCCCCE
Confidence 12899999999999999999999999999999999999996 8999999999999999999999999999998875 69
Q ss_pred EEEEecchhhcc--------------------------------------------------------------cHHHHH
Q 012478 226 VIVARTDSRQAL--------------------------------------------------------------SLEESL 243 (462)
Q Consensus 226 vIiARTDA~~~~--------------------------------------------------------------gldeAI 243 (462)
+||||||++++. +.|.+|
T Consensus 256 vIIARTDA~~A~L~~~Id~~~~~g~~~~~~~~w~~~~~i~~~~~~~~~~~i~~~~~~~~~~Rt~eG~Y~~k~gtg~~~~I 335 (531)
T PRK06498 256 VIVARTDSLGAGLTQQIAVSQEPGDLGDQYNSFLDCEEIDAADLGNGDVVIKRDGKLLRPKRLPSGLFQFREGTGEDRCV 335 (531)
T ss_pred EEEEecchhhcCCccccccccccchhhHHHHhhhhhcccCHHHhcccchhHhhcccccCCCCCcccceeecCCCchHHHH
Confidence 999999997542 345599
Q ss_pred HHHHHhHhcCCcEEEecC-CCCHHHHHHHHHh----CCCCceeeeeeecCCCCCCC------------------------
Q 012478 244 RRSRAFADAGADVLFIDA-LASKEEMKAFCEI----SPLVPKMANMLEGGGKTPIL------------------------ 294 (462)
Q Consensus 244 ~RakAy~eAGAD~Ifie~-~~s~eei~~i~~~----v~~vP~~~N~l~~~g~tP~l------------------------ 294 (462)
.||.+...-|||+|++|. .|+.+++++|++. +|...+..|..+.-.-+-.|
T Consensus 336 ~r~i~a~apyADLlW~ET~~P~~~qa~~fa~~Ir~~~P~~~LaYN~SPSFNW~~~~r~q~~~~~~~~G~~~~~~~~~~lm 415 (531)
T PRK06498 336 LDCITSLQNGADLLWIETEKPHVAQIAGMVNRIREVVPNAKLVYNNSPSFNWTLNFRQQVYDAWKAEGKDVSAYDRAKLM 415 (531)
T ss_pred HHHHHhhcCcCcEEEecCCCCCHHHHHHHHHHHHHHCCCCeEEecCCCCcchhhhHHHHHHHHHHHhcccccccchhhhc
Confidence 999964589999999997 4788899988865 45433444433210000001
Q ss_pred ------------C-------HHHHHh-cCCCEEeccchHHHHHHHHHHHHHHHHH
Q 012478 295 ------------N-------PLELEE-LGFKLVAYPLSLIGVSVRAMQDALTAIK 329 (462)
Q Consensus 295 ------------s-------~~eL~~-lGv~~V~yp~~ll~aa~~Am~~~l~~l~ 329 (462)
+ ..||.+ +||..-.+.+..+.....+|.+..+...
T Consensus 416 ~~~~d~~~l~~~~d~~i~~Fq~dla~~~G~~~qfITLag~Ht~als~~~LAk~y~ 470 (531)
T PRK06498 416 SAEYDDTELAAEADEKIRTFQADAAREAGIFHHLITLPTYHTAALSTDNLAKGYF 470 (531)
T ss_pred cccccccccccCCHHHHHHHHHHHHHhCCceEEEeccHhHHHhHHHHHHHHHHHh
Confidence 1 135666 8888888888888777777777766643
No 17
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=100.00 E-value=2.8e-36 Score=296.62 Aligned_cols=178 Identities=21% Similarity=0.274 Sum_probs=155.8
Q ss_pred HHHHHHHhCCCceEecccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCc-EEEeC
Q 012478 79 KSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIP-VIGDG 157 (462)
Q Consensus 79 ~~LR~ll~~~~~iv~p~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iP-VIaD~ 157 (462)
+.||++|++++++++|||||++||++++++|||+|+++ .+++++.+|+||++.+|++||++|+++|+++++.| |++|+
T Consensus 2 ~~lr~l~~~~~~l~~~~ayD~~sA~l~e~aG~d~i~vG-ds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~~p~viaD~ 80 (254)
T cd06557 2 PDLQKMKKAGEKIVMLTAYDYPTAKLADEAGVDVILVG-DSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAPRALVVADM 80 (254)
T ss_pred hhHHHHHhCCCcEEEEeCCCHHHHHHHHHcCCCEEEEC-HHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCeEEEeC
Confidence 46999999999999999999999999999999999965 34445679999999999999999999999999999 99999
Q ss_pred CCC-CCC-HHHHHHH-HHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHH--------------h
Q 012478 158 DNG-YGN-AMNVKRT-VKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARK--------------E 220 (462)
Q Consensus 158 DtG-yG~-~~nv~rt-Vk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~--------------~ 220 (462)
++| |++ ++++.++ ++.++++||+||||||+ +|+++||+++++++. .
T Consensus 81 ~fg~y~~~~~~av~~a~r~~~~aGa~aVkiEd~-----------------~~~~~~I~al~~agipV~gHiGL~pq~~~~ 143 (254)
T cd06557 81 PFGSYQTSPEQALRNAARLMKEAGADAVKLEGG-----------------AEVAETIRALVDAGIPVMGHIGLTPQSVNQ 143 (254)
T ss_pred CCCcccCCHHHHHHHHHHHHHHhCCeEEEEcCc-----------------HHHHHHHHHHHHcCCCeeccccccceeeec
Confidence 975 886 7665555 66666699999999998 489999999998873 1
Q ss_pred hCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEecCCCCHHHHHHHHHhCCCCcee
Q 012478 221 SGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKM 281 (462)
Q Consensus 221 ~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~ 281 (462)
+ ++|++++|||+. .+++|+||++|++||||+||+|++++ +++++++++++ +|+.
T Consensus 144 ~-gg~~~~grt~~~----a~~~i~ra~a~~~AGA~~i~lE~v~~-~~~~~i~~~v~-iP~i 197 (254)
T cd06557 144 L-GGYKVQGKTEEE----AERLLEDALALEEAGAFALVLECVPA-ELAKEITEALS-IPTI 197 (254)
T ss_pred c-CCceeccCCHHH----HHHHHHHHHHHHHCCCCEEEEcCCCH-HHHHHHHHhCC-CCEE
Confidence 2 478999999985 48999999999999999999999986 79999999987 6753
No 18
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=100.00 E-value=1.2e-35 Score=293.40 Aligned_cols=179 Identities=20% Similarity=0.253 Sum_probs=155.4
Q ss_pred HHHHHHHHhCCCceEecccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCc-EEEe
Q 012478 78 AKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIP-VIGD 156 (462)
Q Consensus 78 a~~LR~ll~~~~~iv~p~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iP-VIaD 156 (462)
..+||+++++++++++|||||++||++++++|||+|+++ .+++++.+|+||++.+|++||++|+++|+++++.| |++|
T Consensus 4 ~~~lr~~~~~g~~i~~~tayD~~sArl~e~aG~d~i~vG-ds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~vvaD 82 (264)
T PRK00311 4 ISDLQKMKQEGEKIVMLTAYDYPFAKLFDEAGVDVILVG-DSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRALVVAD 82 (264)
T ss_pred HHHHHHHHhCCCCEEEEeCCCHHHHHHHHHcCCCEEEEC-HHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCcEEEe
Confidence 568999999999999999999999999999999999976 33334579999999999999999999999999975 9999
Q ss_pred CCCC-CC-CHHH-HHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHH--------------
Q 012478 157 GDNG-YG-NAMN-VKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARK-------------- 219 (462)
Q Consensus 157 ~DtG-yG-~~~n-v~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~-------------- 219 (462)
+++| |+ ++++ +.++++.++++||+||||||+ +++++||+++++++.
T Consensus 83 ~pfg~y~~~~~~av~~a~r~~~~aGa~aVkiEdg-----------------~~~~~~I~al~~agIpV~gHiGL~pq~~~ 145 (264)
T PRK00311 83 MPFGSYQASPEQALRNAGRLMKEAGAHAVKLEGG-----------------EEVAETIKRLVERGIPVMGHLGLTPQSVN 145 (264)
T ss_pred CCCCCccCCHHHHHHHHHHHHHHhCCeEEEEcCc-----------------HHHHHHHHHHHHCCCCEeeeecccceeec
Confidence 9975 84 6776 555577777799999999997 378999999998861
Q ss_pred hhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEecCCCCHHHHHHHHHhCCCCcee
Q 012478 220 ESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKM 281 (462)
Q Consensus 220 ~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~ 281 (462)
.+ ++|++++|||+. .+++|+||++|++||||+||+|++++ +++++++++++ +|+.
T Consensus 146 ~~-gg~~i~grt~~~----a~~~i~ra~a~~eAGA~~i~lE~v~~-~~~~~i~~~l~-iP~i 200 (264)
T PRK00311 146 VL-GGYKVQGRDEEA----AEKLLEDAKALEEAGAFALVLECVPA-ELAKEITEALS-IPTI 200 (264)
T ss_pred cc-CCeeeecCCHHH----HHHHHHHHHHHHHCCCCEEEEcCCCH-HHHHHHHHhCC-CCEE
Confidence 12 479999999986 48999999999999999999999977 89999999987 6763
No 19
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=99.98 E-value=1.6e-30 Score=256.61 Aligned_cols=233 Identities=14% Similarity=0.154 Sum_probs=170.5
Q ss_pred HHHHHHHHhCCCceEecccCChHHHHHHHHhCCcEEEec-cHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCC-cEEE
Q 012478 78 AKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSI-PVIG 155 (462)
Q Consensus 78 a~~LR~ll~~~~~iv~p~ayDalSArl~e~aGfdaI~vS-G~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~i-PVIa 155 (462)
...|+++++++++++||||||+.||++++++|||+|++| ++++ ..+|+||+..+|++||++|+++|+|++.. .||+
T Consensus 4 ~~~~~~~~~~g~~i~m~tayD~~sA~i~~~aG~d~ilvGdSlgm--~~lG~~~t~~vtldem~~h~~aV~rg~~~~~vv~ 81 (263)
T TIGR00222 4 TLSLLQKKKQEEKIVAITAYDYSFAKLFADAGVDVILVGDSLGM--VVLGHDSTLPVTVADMIYHTAAVKRGAPNCLIVT 81 (263)
T ss_pred HHHHHHHHhCCCcEEEEeccCHHHHHHHHHcCCCEEEECccHhH--HhcCCCCCCCcCHHHHHHHHHHHHhhCCCceEEe
Confidence 457999999999999999999999999999999999999 4444 47999999999999999999999999874 4778
Q ss_pred eCCCC-CCCHHHHHHHHHHHHH-hCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHH-------------h
Q 012478 156 DGDNG-YGNAMNVKRTVKGYIK-AGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARK-------------E 220 (462)
Q Consensus 156 D~DtG-yG~~~nv~rtVk~l~~-AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~-------------~ 220 (462)
|+|+| |++++.+.+++.++++ +||+||||||+. +++++|++++++.. .
T Consensus 82 DmPf~sy~~~e~a~~na~rl~~eaGa~aVkiEgg~-----------------~~~~~i~~l~~~gIpV~gHiGltPq~a~ 144 (263)
T TIGR00222 82 DLPFMSYATPEQALKNAARVMQETGANAVKLEGGE-----------------WLVETVQMLTERGVPVVGHLGLTPQSVN 144 (263)
T ss_pred CCCcCCCCCHHHHHHHHHHHHHHhCCeEEEEcCcH-----------------hHHHHHHHHHHCCCCEEEecCCCceeEe
Confidence 99996 8888888888777666 999999999972 34455555444320 0
Q ss_pred hCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEecCCCCHHHHHHHHHhCCCCceeeeeee-cCCCC-CCCCHHH
Q 012478 221 SGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLE-GGGKT-PILNPLE 298 (462)
Q Consensus 221 ~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~l~-~~g~t-P~ls~~e 298 (462)
...+|++++||++.+ +++|+||++|++||||+||+|+++ .+.+++|+++++ +| +|=+. +++.- ..|-..|
T Consensus 145 ~~ggy~~qgrt~~~a----~~~i~~A~a~e~AGA~~ivlE~vp-~~~a~~It~~l~-iP--~iGIGaG~~~dGQvlV~~D 216 (263)
T TIGR00222 145 ILGGYKVQGKDEEAA----KKLLEDALALEEAGAQLLVLECVP-VELAAKITEALA-IP--VIGIGAGNVCDGQILVMHD 216 (263)
T ss_pred ecCCeeecCCCHHHH----HHHHHHHHHHHHcCCCEEEEcCCc-HHHHHHHHHhCC-CC--EEeeccCCCCCceeeeHHh
Confidence 124688888887754 789999999999999999999999 489999999987 55 33231 11110 1122344
Q ss_pred HHhcCCC----EEeccchHHHHHHHHHHHHHHHHHcCCCCCCC
Q 012478 299 LEELGFK----LVAYPLSLIGVSVRAMQDALTAIKGGRIPSPG 337 (462)
Q Consensus 299 L~~lGv~----~V~yp~~ll~aa~~Am~~~l~~l~~g~~~~~~ 337 (462)
|--+.-. .+--=..+......|+++..++.++|.+|.+.
T Consensus 217 ~lG~~~~~~pkf~k~y~~~~~~~~~a~~~y~~~V~~g~fP~~~ 259 (263)
T TIGR00222 217 ALGITVGHIPKFAKNYLAETETIRAAVRQYMAEVRSGVFPGEE 259 (263)
T ss_pred hcCCCCCCCCCchHHHhhHHHHHHHHHHHHHHHHhCCCCCCCc
Confidence 4333111 11100112334556677777777777776543
No 20
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=99.97 E-value=1.1e-29 Score=256.46 Aligned_cols=234 Identities=18% Similarity=0.218 Sum_probs=170.2
Q ss_pred hHHHHHHHHhCCCceEecccCChHHHHHHHHhCCcEEEec-cHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEE
Q 012478 77 PAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIG 155 (462)
Q Consensus 77 ~a~~LR~ll~~~~~iv~p~ayDalSArl~e~aGfdaI~vS-G~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIa 155 (462)
....|+++++++++|+|++|||+.||++++++|+|+|+++ |+++ .++||+|+..+|++||+.|++.|+|++..|+++
T Consensus 23 ti~~l~~~k~~g~kivmlTAyD~~sA~i~d~aGvD~ILVGDSlgm--v~lG~~~T~~Vtld~mi~H~~aV~Rga~~a~vV 100 (332)
T PLN02424 23 TLRTLRQKYRRGEPITMVTAYDYPSAVHVDSAGIDVCLVGDSAAM--VVHGHDTTLPITLDEMLVHCRAVARGANRPLLV 100 (332)
T ss_pred CHHHHHHHHhCCCcEEEEecCCHHHHHHHHHcCCCEEEECCcHHH--HhcCCCCCCCcCHHHHHHHHHHHhccCCCCEEE
Confidence 3568999999999999999999999999999999999999 5554 479999999999999999999999999988766
Q ss_pred -eCCCC-CC-CHHHHHHHHHHHH-HhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHH------------
Q 012478 156 -DGDNG-YG-NAMNVKRTVKGYI-KAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARK------------ 219 (462)
Q Consensus 156 -D~DtG-yG-~~~nv~rtVk~l~-~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~------------ 219 (462)
|+|+| |+ +++.+.+++.+++ ++||+||||||+. .+.++.|++++++..
T Consensus 101 aDmPfgSY~~s~e~av~nA~rl~~eaGa~aVKlEGg~----------------~~~~~~I~~l~~~GIPV~gHiGLtPQs 164 (332)
T PLN02424 101 GDLPFGSYESSTDQAVESAVRMLKEGGMDAVKLEGGS----------------PSRVTAAKAIVEAGIAVMGHVGLTPQA 164 (332)
T ss_pred eCCCCCCCCCCHHHHHHHHHHHHHHhCCcEEEECCCc----------------HHHHHHHHHHHHcCCCEEEeeccccee
Confidence 99999 97 6788888888775 6999999999982 123344444442210
Q ss_pred --hhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEecCCCCHHHHHHHHHhCCCCceeeeeeecCCCC-CCCCH
Q 012478 220 --ESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKT-PILNP 296 (462)
Q Consensus 220 --~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~l~~~g~t-P~ls~ 296 (462)
.+ .+|.+++||+.. .++.|+||++|++||||+||+|++++. .+++|++.++ +|+. -+=.++++- -.|-.
T Consensus 165 ~~~l-GGykvqGr~~~~----a~~li~dA~ale~AGAf~ivLE~Vp~~-la~~It~~l~-IPtI-GIGAG~~cDGQVLV~ 236 (332)
T PLN02424 165 ISVL-GGFRPQGRTAES----AVKVVETALALQEAGCFAVVLECVPAP-VAAAITSALQ-IPTI-GIGAGPFCSGQVLVY 236 (332)
T ss_pred ehhh-cCccccCCCHHH----HHHHHHHHHHHHHcCCcEEEEcCCcHH-HHHHHHHhCC-CCEE-eecCCCCCCceeEeH
Confidence 01 245555555442 478999999999999999999999985 9999999987 6764 221111110 01223
Q ss_pred HHHHhcCCCEE-----eccch------HHHHHHHHHHHHHHHHHcCCCCCCCC
Q 012478 297 LELEELGFKLV-----AYPLS------LIGVSVRAMQDALTAIKGGRIPSPGS 338 (462)
Q Consensus 297 ~eL~~lGv~~V-----~yp~~------ll~aa~~Am~~~l~~l~~g~~~~~~~ 338 (462)
.|+- |+.-= ..|-. +......|+++...+.++|.++....
T Consensus 237 ~D~L--G~~~~p~h~~~~PkFvk~y~~~~~~~~~A~~~y~~eVk~g~FP~~eh 287 (332)
T PLN02424 237 HDLL--GMMQHPHHAKVTPKFCKQYAKVGEVINKALAEYKEEVENGAFPGPAH 287 (332)
T ss_pred Hhhc--CCCCCccccCCCCchHHHHHhHHHHHHHHHHHHHHHHhCCCCCCccc
Confidence 3332 22100 12222 33445677777778888888876543
No 21
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=99.94 E-value=3.4e-26 Score=225.37 Aligned_cols=180 Identities=19% Similarity=0.281 Sum_probs=135.5
Q ss_pred HHHHHHHHhCCCceEecccCChHHHHHHHHhCCcEEEec-cHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcC-CcEEE
Q 012478 78 AKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVS-IPVIG 155 (462)
Q Consensus 78 a~~LR~ll~~~~~iv~p~ayDalSArl~e~aGfdaI~vS-G~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~-iPVIa 155 (462)
...|+++++++++|++.+|||+.+|++++++|+|.|+++ |+++. .+|++++..+|++||++|++.++|++. .+||+
T Consensus 5 ~~~l~~~k~~g~ki~~lTaYD~~~A~~~d~agvD~iLVGDSlgmv--~~G~~sT~~vtld~mi~h~~aV~Rga~~~~vv~ 82 (261)
T PF02548_consen 5 VSDLRKMKQKGEKIVMLTAYDYPSARIADEAGVDIILVGDSLGMV--VLGYDSTLPVTLDEMIYHTKAVRRGAPNAFVVA 82 (261)
T ss_dssp HHHHHHHHHHT--EEEEE--SHHHHHHHHHTT-SEEEE-TTHHHH--TT--SSSTT--HHHHHHHHHHHHHH-TSSEEEE
T ss_pred HHHHHHHHhCCCcEEEEecccHHHHHHHHHcCCCEEEeCCcHHHh--eeCCCCCcCcCHHHHHHHHHHHHhcCCCceEEe
Confidence 568999999999999999999999999999999999999 88875 799999999999999999999999985 88999
Q ss_pred eCCCC-C-CCHHHHHHHHHHHHH-hCccEEEeCCCCC------------CCCCCCCCCCcccCHHHHHHHHHHHHHHHHh
Q 012478 156 DGDNG-Y-GNAMNVKRTVKGYIK-AGFAGIILEDQVS------------PKGCGHTRGRKVVSREEAVMRIKAAVDARKE 220 (462)
Q Consensus 156 D~DtG-y-G~~~nv~rtVk~l~~-AGaaGI~IEDq~~------------PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~ 220 (462)
|+|+| | .+.+.+.+++.++++ +||++|+||+... .+.|||.+ |+|+.. ..
T Consensus 83 DmPf~sy~~s~e~av~nA~rl~ke~GadaVKlEGg~~~~~~i~~l~~~GIPV~gHiG---LtPQ~~--~~---------- 147 (261)
T PF02548_consen 83 DMPFGSYQASPEQAVRNAGRLMKEAGADAVKLEGGAEIAETIKALVDAGIPVMGHIG---LTPQSV--HQ---------- 147 (261)
T ss_dssp E--TTSSTSSHHHHHHHHHHHHHTTT-SEEEEEBSGGGHHHHHHHHHTT--EEEEEE---S-GGGH--HH----------
T ss_pred cCCcccccCCHHHHHHHHHHHHHhcCCCEEEeccchhHHHHHHHHHHCCCcEEEEec---Cchhhe--ec----------
Confidence 99999 7 578777777777776 9999999998742 36777776 666541 12
Q ss_pred hCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEecCCCCHHHHHHHHHhCCCCcee
Q 012478 221 SGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKM 281 (462)
Q Consensus 221 ~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~ 281 (462)
+ ++|.+++||...+ .+.++.|+++++|||++|++|+++. +..++++++++ +|+.
T Consensus 148 ~-GGyr~qGk~~~~a----~~l~~~A~ale~AGaf~ivlE~vp~-~la~~It~~l~-IPtI 201 (261)
T PF02548_consen 148 L-GGYRVQGKTAEEA----EKLLEDAKALEEAGAFAIVLECVPA-ELAKAITEALS-IPTI 201 (261)
T ss_dssp H-TSS--CSTSHHHH----HHHHHHHHHHHHHT-SEEEEESBBH-HHHHHHHHHSS-S-EE
T ss_pred c-CCceEEecCHHHH----HHHHHHHHHHHHcCccEEeeecCHH-HHHHHHHHhCC-CCEE
Confidence 2 4899999997654 6788999999999999999999986 68888889887 6764
No 22
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=99.92 E-value=1.1e-24 Score=213.14 Aligned_cols=234 Identities=18% Similarity=0.241 Sum_probs=175.4
Q ss_pred HHHHHHHHhCCCceEecccCChHHHHHHHHhCCcEEEec-cHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcC-CcEEE
Q 012478 78 AKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVS-IPVIG 155 (462)
Q Consensus 78 a~~LR~ll~~~~~iv~p~ayDalSArl~e~aGfdaI~vS-G~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~-iPVIa 155 (462)
..+|+++.+++++++++++||+.+|++++++|+|.|+++ |+++. .+|++++-.+|+++|+.|++.++|++. ..|++
T Consensus 4 ~~~~~~~k~~~~ki~~lTAYD~~~A~~~d~agvd~lLVGDSlgmv--v~G~~sTl~Vsl~~mi~ht~aV~Rga~~~~vv~ 81 (268)
T COG0413 4 TRTLIKMKQEGEKIVMLTAYDYPFAKLFDQAGVDVLLVGDSLGMV--VLGYDSTLPVTLEDMIYHTKAVRRGAPNAFVVA 81 (268)
T ss_pred HHHHHHHHhcCCceEEEeccccHHHhhhhhcCCcEEEEeccHHHH--HcCCCCcceecHHHHHHHHHHHHhcCCCeeEEe
Confidence 467999999999999999999999999999999999999 88875 699999999999999999999999885 88999
Q ss_pred eCCCC-CC-CHHHHHHHHHHHH-HhCccEEEeCCCCC------------CCCCCCCCCCcccCHHHHHHHHHHHHHHHHh
Q 012478 156 DGDNG-YG-NAMNVKRTVKGYI-KAGFAGIILEDQVS------------PKGCGHTRGRKVVSREEAVMRIKAAVDARKE 220 (462)
Q Consensus 156 D~DtG-yG-~~~nv~rtVk~l~-~AGaaGI~IEDq~~------------PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~ 220 (462)
|+|+| |. ++++..++..++. ++||.+|+||++.+ .+.|||.+ |+|+.. ..
T Consensus 82 DmPF~sy~~s~~~a~~nA~r~~ke~gA~aVKlEGG~~~~~~i~~L~~~gIPV~gHiG---LtPQ~v--~~---------- 146 (268)
T COG0413 82 DLPFGSYEVSPEQALKNAARLMKEAGADAVKLEGGEEMAETIKRLTERGIPVMGHIG---LTPQSV--NW---------- 146 (268)
T ss_pred CCCCcccCCCHHHHHHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHHHcCCceEEEec---CChhhh--hc----------
Confidence 99999 87 6776666654555 59999999999832 47899988 888752 22
Q ss_pred hCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEecCCCCHHHHHHHHHhCCCCceeeeeeecCCCCC-CCCHHHH
Q 012478 221 SGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTP-ILNPLEL 299 (462)
Q Consensus 221 ~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP-~ls~~eL 299 (462)
+ ++|.+++|++..+ ++.++.|++.++|||++|++|+++. +..++|++.++ +|++ -+=.+++.-- .|=.+|+
T Consensus 147 ~-GGykvqGr~~~~a----~~l~~dA~ale~AGaf~ivlE~Vp~-~lA~~IT~~ls-iPtI-GIGAG~~cDGQvLV~~D~ 218 (268)
T COG0413 147 L-GGYKVQGRTEESA----EKLLEDAKALEEAGAFALVLECVPA-ELAKEITEKLS-IPTI-GIGAGPGCDGQVLVMHDM 218 (268)
T ss_pred c-CCeeeecCCHHHH----HHHHHHHHHHHhcCceEEEEeccHH-HHHHHHHhcCC-CCEE-eecCCCCCCceEEEeeec
Confidence 2 5899999998654 6778899999999999999999986 68888998876 5643 2212111100 0111111
Q ss_pred HhcCCCEEeccc------hHHHHHHHHHHHHHHHHHcCCCCCCCC
Q 012478 300 EELGFKLVAYPL------SLIGVSVRAMQDALTAIKGGRIPSPGS 338 (462)
Q Consensus 300 ~~lGv~~V~yp~------~ll~aa~~Am~~~l~~l~~g~~~~~~~ 338 (462)
||...=-.|- .+-.....|+++.....+.|.+|....
T Consensus 219 --lGl~~~~~PkFvK~y~~l~~~i~~A~~~Y~~eV~~g~FP~~~H 261 (268)
T COG0413 219 --LGLSGGHKPKFVKRYADLGEEIRAAVKQYAAEVKSGTFPEEEH 261 (268)
T ss_pred --cccCCCCCCcHHHHHhcchHHHHHHHHHHHHHHhcCCCCCccc
Confidence 1211100111 122345567777777778887765543
No 23
>KOG2949 consensus Ketopantoate hydroxymethyltransferase [Coenzyme transport and metabolism]
Probab=99.77 E-value=4.6e-18 Score=164.35 Aligned_cols=182 Identities=17% Similarity=0.200 Sum_probs=148.6
Q ss_pred CchHHHHHHHHhCCCceEecccCChHHHHHHHHhCCcEEEec-cHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCc-
Q 012478 75 LSPAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIP- 152 (462)
Q Consensus 75 ~~~a~~LR~ll~~~~~iv~p~ayDalSArl~e~aGfdaI~vS-G~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iP- 152 (462)
....+.||+.+..++++.+.++||+.+|+++..+|+|.++++ |++|. ++|+-.+-.++++||+.|++.++|+..-|
T Consensus 24 ~~Ti~~lRqk~~~g~p~t~~TAYD~~~a~~~~~ag~dv~LVGDSl~Mt--~~GhdtTlpiSl~e~~yH~~sV~Rga~~~l 101 (306)
T KOG2949|consen 24 RVTITTLRQKHRAGEPITMVTAYDYPSAVHFDTAGIDVCLVGDSLAMT--VHGHDTTLPISLEEMLYHCRSVARGAKRPL 101 (306)
T ss_pred eeeHHHHHHHHhcCCceEEEEecccchhhhhhhcCCcEEEeccchhhe--eeccccceeeeHHHHHHHHHHHHccCCCce
Confidence 344678999999999999999999999999999999999999 88875 69998899999999999999999998755
Q ss_pred EEEeCCCC-CCC-H-HHHHHHHHHHHHhCccEEEeCCCCC-------------CCCCCCCCCCcccCHHHHHHHHHHHHH
Q 012478 153 VIGDGDNG-YGN-A-MNVKRTVKGYIKAGFAGIILEDQVS-------------PKGCGHTRGRKVVSREEAVMRIKAAVD 216 (462)
Q Consensus 153 VIaD~DtG-yG~-~-~nv~rtVk~l~~AGaaGI~IEDq~~-------------PKrCGH~~gk~Lvp~ee~~~kI~AA~~ 216 (462)
|++|+|+| |-+ - ..+..+++-|.++|+..|+||.+.. .+..||.+ |.|+...
T Consensus 102 lv~DlPFgtyeS~~sda~knAv~vmk~~g~~~vK~EgGs~~~~~~~~~l~ergipV~gHvG---LTPQ~v~--------- 169 (306)
T KOG2949|consen 102 LVGDLPFGTYESSWSDAVKNAVRVMKEGGMDAVKLEGGSNSRITAAKRLVERGIPVMGHVG---LTPQAVS--------- 169 (306)
T ss_pred EEEecCcccccccHHHHHHHHHHHHHhcCCceEEEccCcHHHHHHHHHHHHcCCceeeecc---CChhhhh---------
Confidence 78999999 633 3 4566667777789999999999852 25667765 5555311
Q ss_pred HHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEecCCCCHHHHHHHHHhCCCCce
Q 012478 217 ARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPK 280 (462)
Q Consensus 217 Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~ 280 (462)
.+ ++|.+++|.-+.+ .+.+|-|.+++++||+.|++||++. ...+.+...++ +|+
T Consensus 170 ---~l-GGyk~QGr~~~~a----~~l~EtAmqLqk~Gc~svvlECvP~-~~A~~iTs~ls-iPT 223 (306)
T KOG2949|consen 170 ---VL-GGYKPQGRNIASA----VKLVETAMQLQKAGCFSVVLECVPP-PVAAAITSALS-IPT 223 (306)
T ss_pred ---hc-cCcCccchhHHHH----HHHHHHHHHHHhcccceEeeecCCh-HHHHHHHhccC-Ccc
Confidence 23 4899999876543 5778899999999999999999986 36677777776 565
No 24
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=98.11 E-value=8.5e-05 Score=74.44 Aligned_cols=164 Identities=22% Similarity=0.260 Sum_probs=94.4
Q ss_pred HHHHHHHHhCCCceEecccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCC-CCCCHH----HHHHHHHHHHhhc-CC
Q 012478 78 AKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDT-GFISYG----EMVDQGQLITQAV-SI 151 (462)
Q Consensus 78 a~~LR~ll~~~~~iv~p~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~-g~vsl~----Eml~~~~~I~ra~-~i 151 (462)
-++||+.++++++++.-++--++||+.+|+.|.|.|.+=..+-- -+.|.+.. +++++. -+++.++.|.-.+ +.
T Consensus 4 l~~l~~~i~~~~pIig~gaGtGlsAk~ae~gGaDlI~~ynsGrf-R~~G~~SlagllpygnaN~iv~em~~eiLp~v~~t 82 (268)
T PF09370_consen 4 LDRLRAQIKAGKPIIGAGAGTGLSAKCAEKGGADLILIYNSGRF-RMAGRGSLAGLLPYGNANEIVMEMAREILPVVKDT 82 (268)
T ss_dssp HHHHHHHHHTT--EEEEEESSHHHHHHHHHTT-SEEEE-HHHHH-HHTT--GGGGGBTEEEHHHHHHHHHHHHGGG-SSS
T ss_pred HHHHHHHHhCCCceEEEeeccchhhHHHHhcCCCEEEEecchhH-hhCCCcchhhhhcccCHhHHHHHHHHhhhhhccCC
Confidence 36899999999999999999999999999999998887644432 23466665 556653 2455566666555 48
Q ss_pred cEEEeCCCCCCCH-HHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHH----HHHHHHHHHHHHHhhCCCeE
Q 012478 152 PVIGDGDNGYGNA-MNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREE----AVMRIKAAVDARKESGSDIV 226 (462)
Q Consensus 152 PVIaD~DtGyG~~-~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee----~~~kI~AA~~Ar~~~g~d~v 226 (462)
||++=.=. .+| .++.+-.+++.+.|.+||+= +| ..|+.+|+--...|| +-.-|..++.|++ .|++
T Consensus 83 PViaGv~a--tDP~~~~~~fl~~lk~~Gf~GV~N----fP-TvgliDG~fR~~LEe~Gmgy~~EVemi~~A~~---~gl~ 152 (268)
T PF09370_consen 83 PVIAGVCA--TDPFRDMDRFLDELKELGFSGVQN----FP-TVGLIDGQFRQNLEETGMGYDREVEMIRKAHE---KGLF 152 (268)
T ss_dssp -EEEEE-T--T-TT--HHHHHHHHHHHT-SEEEE-----S--GGG--HHHHHHHHHTT--HHHHHHHHHHHHH---TT-E
T ss_pred CEEEEecC--cCCCCcHHHHHHHHHHhCCceEEE----CC-cceeeccHHHHHHHhcCCCHHHHHHHHHHHHH---CCCe
Confidence 88875422 144 57888899999999999963 33 245555421111111 2333444555554 2565
Q ss_pred EEEecchhhcccHHHHHHHHHHhHhcCCcEEEecC
Q 012478 227 IVARTDSRQALSLEESLRRSRAFADAGADVLFIDA 261 (462)
Q Consensus 227 IiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~ 261 (462)
=++=.-. .+.|+++.+||||+|+++.
T Consensus 153 T~~yvf~---------~e~A~~M~~AGaDiiv~H~ 178 (268)
T PF09370_consen 153 TTAYVFN---------EEQARAMAEAGADIIVAHM 178 (268)
T ss_dssp E--EE-S---------HHHHHHHHHHT-SEEEEE-
T ss_pred eeeeecC---------HHHHHHHHHcCCCEEEecC
Confidence 5544321 2368889999999999984
No 25
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=98.00 E-value=0.0013 Score=63.56 Aligned_cols=138 Identities=17% Similarity=0.168 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhh--cccHHH
Q 012478 164 AMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQ--ALSLEE 241 (462)
Q Consensus 164 ~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~--~~glde 241 (462)
.......+++..++||.+|.+.... |. .+.++..+.+++++++.++.|..++|....+... .....+
T Consensus 75 ~~~~~~~v~~a~~~Ga~~v~~~~~~-----~~------~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~ 143 (235)
T cd00958 75 DKVLVASVEDAVRLGADAVGVTVYV-----GS------EEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPD 143 (235)
T ss_pred chhhhcCHHHHHHCCCCEEEEEEec-----CC------chHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHH
Confidence 3444556888899999999887653 11 1246778888888887776677777755443211 001246
Q ss_pred HHHH-HHHhHhcCCcEEEecCCCCHHHHHHHHHhCCCCceeeeeeecCCCCCCC-----CHHHHHhcCCCEEeccchHHH
Q 012478 242 SLRR-SRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPIL-----NPLELEELGFKLVAYPLSLIG 315 (462)
Q Consensus 242 AI~R-akAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~l-----s~~eL~~lGv~~V~yp~~ll~ 315 (462)
.+++ ++.+.++|||.|.+....+.+.++++++..+ +|+ ++.++-+.... ..+++.+.|++.++++..++.
T Consensus 144 ~i~~~~~~a~~~GaD~Ik~~~~~~~~~~~~i~~~~~-~pv---v~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~ 219 (235)
T cd00958 144 LIAYAARIGAELGADIVKTKYTGDAESFKEVVEGCP-VPV---VIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQ 219 (235)
T ss_pred HHHHHHHHHHHHCCCEEEecCCCCHHHHHHHHhcCC-CCE---EEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhhhc
Confidence 6777 8999999999999976667889999998765 453 23332121110 167889999999999988874
Q ss_pred H
Q 012478 316 V 316 (462)
Q Consensus 316 a 316 (462)
.
T Consensus 220 ~ 220 (235)
T cd00958 220 R 220 (235)
T ss_pred C
Confidence 3
No 26
>PRK08185 hypothetical protein; Provisional
Probab=97.99 E-value=0.0023 Score=64.89 Aligned_cols=215 Identities=16% Similarity=0.188 Sum_probs=140.5
Q ss_pred HHHHHHhCCCceEecccCChHHHHH----HHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEE
Q 012478 80 SLRQILELPGVHQGPACFDALSAKL----VEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIG 155 (462)
Q Consensus 80 ~LR~ll~~~~~iv~p~ayDalSArl----~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIa 155 (462)
-|....+.+-.+.+.|+||.-+++. +|+.+.+.|+..+-+.. ...| . ++...++.+++..++||.+
T Consensus 4 ~L~~A~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~-~~~~--------~-~~~~~~~~~a~~~~vPV~l 73 (283)
T PRK08185 4 LLKVAKEHQFAVGAFNVADSCFLRAVVEEAEANNAPAIIAIHPNEL-DFLG--------D-NFFAYVRERAKRSPVPFVI 73 (283)
T ss_pred HHHHHHHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCcchh-hhcc--------H-HHHHHHHHHHHHCCCCEEE
Confidence 4555555666688999999999865 46679998887754432 1122 2 3677788888888999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCC----eEEEEec
Q 012478 156 DGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSD----IVIVART 231 (462)
Q Consensus 156 D~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d----~vIiART 231 (462)
=.|+|. + .+.+++.+++|...|.|... | .|.+|-+++-+.+++-.+..|.. +=+++-.
T Consensus 74 HLDHg~-~----~e~i~~ai~~Gf~SVM~D~S-------~------l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~ 135 (283)
T PRK08185 74 HLDHGA-T----IEDVMRAIRCGFTSVMIDGS-------L------LPYEENVALTKEVVELAHKVGVSVEGELGTIGNT 135 (283)
T ss_pred ECCCCC-C----HHHHHHHHHcCCCEEEEeCC-------C------CCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCc
Confidence 999995 3 34456667899999999443 3 36777777777777555543311 1111111
Q ss_pred chhhcccHHH----HHHHHHHhHhc-CCcEEEe-----cCC--------CCHHHHHHHHHhCCCCceeeeeeecCCCCCC
Q 012478 232 DSRQALSLEE----SLRRSRAFADA-GADVLFI-----DAL--------ASKEEMKAFCEISPLVPKMANMLEGGGKTPI 293 (462)
Q Consensus 232 DA~~~~glde----AI~RakAy~eA-GAD~Ifi-----e~~--------~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ 293 (462)
+.....+.++ -.+.|+.|.+. |+|++.+ +++ -+.+.++++.+.++ +|+ ++.|+..+|.
T Consensus 136 e~~~~~~~~~~~~t~peea~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~~-iPL---VlHGgsg~~~ 211 (283)
T PRK08185 136 GTSIEGGVSEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERVD-IPL---VLHGGSANPD 211 (283)
T ss_pred ccccccccccccCCCHHHHHHHHHhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhhC-CCE---EEECCCCCCH
Confidence 1000000000 23456777776 9999999 554 14688888888775 665 3455333443
Q ss_pred CCHHHHHhcCCCEEeccchHHHHHHHHHHHHHH
Q 012478 294 LNPLELEELGFKLVAYPLSLIGVSVRAMQDALT 326 (462)
Q Consensus 294 ls~~eL~~lGv~~V~yp~~ll~aa~~Am~~~l~ 326 (462)
=...+.-++|++-|-+...+..+..+++++.+.
T Consensus 212 e~~~~ai~~GI~KiNi~T~l~~a~~~~~~~~~~ 244 (283)
T PRK08185 212 AEIAESVQLGVGKINISSDMKYAFFKKVREILS 244 (283)
T ss_pred HHHHHHHHCCCeEEEeChHHHHHHHHHHHHHHH
Confidence 334445578999999999999999999988764
No 27
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=97.90 E-value=0.0057 Score=61.87 Aligned_cols=212 Identities=17% Similarity=0.178 Sum_probs=142.3
Q ss_pred HHHHHHHhCCCceEecccCChHHHHH----HHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcC-CcE
Q 012478 79 KSLRQILELPGVHQGPACFDALSAKL----VEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVS-IPV 153 (462)
Q Consensus 79 ~~LR~ll~~~~~iv~p~ayDalSArl----~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~-iPV 153 (462)
+-|+...+.+-.+.+.|+||.-+++. +|+.+.+.|+.-+-... .+- -++..+...++.+++..+ +||
T Consensus 6 ~~l~~A~~~~yav~Afn~~n~e~~~avi~aAe~~~~PvIl~~~~~~~----~~~----~~~~~~~~~~~~~a~~~~~vpv 77 (282)
T TIGR01859 6 EILQKAKKEGYAVGAFNFNNLEWTQAILEAAEEENSPVIIQVSEGAI----KYM----GGYKMAVAMVKTLIERMSIVPV 77 (282)
T ss_pred HHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHhCCCEEEEcCcchh----hcc----CcHHHHHHHHHHHHHHCCCCeE
Confidence 44556566666788999999988865 46679999986643321 111 015678888888998888 999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecch
Q 012478 154 IGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDS 233 (462)
Q Consensus 154 IaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA 233 (462)
+.-.|.|. + .+.+++.+++|+..|+|... | .|.+|.+++.+.+++-.+..|. -|-+....
T Consensus 78 ~lhlDH~~-~----~e~i~~ai~~Gf~sVmid~s-------~------l~~~eni~~t~~v~~~a~~~gv--~Ve~ElG~ 137 (282)
T TIGR01859 78 ALHLDHGS-S----YESCIKAIKAGFSSVMIDGS-------H------LPFEENLALTKKVVEIAHAKGV--SVEAELGT 137 (282)
T ss_pred EEECCCCC-C----HHHHHHHHHcCCCEEEECCC-------C------CCHHHHHHHHHHHHHHHHHcCC--EEEEeeCC
Confidence 99999984 3 34566777899999999554 2 2567777777777766554332 22222111
Q ss_pred ------------hhcccHHHHHHHHHHhHh-cCCcEEEe-----cCC------CCHHHHHHHHHhCCCCceeeeeeecCC
Q 012478 234 ------------RQALSLEESLRRSRAFAD-AGADVLFI-----DAL------ASKEEMKAFCEISPLVPKMANMLEGGG 289 (462)
Q Consensus 234 ------------~~~~gldeAI~RakAy~e-AGAD~Ifi-----e~~------~s~eei~~i~~~v~~vP~~~N~l~~~g 289 (462)
...++. +.++.+.+ .|+|.|.+ ++. -+.+.++++++.++ +|+. +.|+.
T Consensus 138 ~gg~ed~~~g~~~~~t~~----eea~~f~~~tgvD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~-iPlv---~hGgS 209 (282)
T TIGR01859 138 LGGIEDGVDEKEAELADP----DEAEQFVKETGVDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTN-IPLV---LHGAS 209 (282)
T ss_pred CcCccccccccccccCCH----HHHHHHHHHHCcCEEeeccCccccccCCCCccCHHHHHHHHHHhC-CCEE---EECCC
Confidence 111233 45666775 89999985 211 25688899998875 5652 33321
Q ss_pred CCCCCCHHHHHhcCCCEEeccchHHHHHHHHHHHHHH
Q 012478 290 KTPILNPLELEELGFKLVAYPLSLIGVSVRAMQDALT 326 (462)
Q Consensus 290 ~tP~ls~~eL~~lGv~~V~yp~~ll~aa~~Am~~~l~ 326 (462)
..|.-...++-+.|++-|-+...+..+...++++.+.
T Consensus 210 Gi~~e~i~~~i~~Gi~kiNv~T~l~~a~~~~~~~~~~ 246 (282)
T TIGR01859 210 GIPEEQIKKAIKLGIAKINIDTDCRIAFTAAIRKVLT 246 (282)
T ss_pred CCCHHHHHHHHHcCCCEEEECcHHHHHHHHHHHHHHH
Confidence 2333345666789999999999999999999988764
No 28
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=97.88 E-value=0.0035 Score=62.90 Aligned_cols=205 Identities=17% Similarity=0.199 Sum_probs=122.5
Q ss_pred ceEecccCC--hHHHHHHHHhCCcEEEeccHHHHh-----------------hhccCCCCCCCCHHHHHHHHHHHHhhcC
Q 012478 90 VHQGPACFD--ALSAKLVEKSGFSFCFTSGFSISA-----------------ARLALPDTGFISYGEMVDQGQLITQAVS 150 (462)
Q Consensus 90 ~iv~p~ayD--alSArl~e~aGfdaI~vSG~avSa-----------------s~lG~PD~g~vsl~Eml~~~~~I~ra~~ 150 (462)
.+..||.+| .-..+.+.+.||.++.+.+..... .+.|++.. ..+..+++.+...+..+
T Consensus 14 i~~aag~~~~~~~~~~~~~~~G~g~iv~kt~~~~~~~gn~~pr~~~~~~~~~n~~gl~~~---g~~~~~~~~~~~~~~~~ 90 (300)
T TIGR01037 14 LILASGIMGSGVESLRRIDRSGAGAVVTKSIGLEPRPGYRNPTIVETPCGMLNAIGLQNP---GVEAFLEELKPVREEFP 90 (300)
T ss_pred CEeCCcCCCCCHHHHHHHHHcCCcEEEeCccccccccCCCCCeEEecccHHhhhccCCCc---CHHHHHHHHHHHhccCC
Confidence 445566544 344565667799988885432211 12455442 45666666655555556
Q ss_pred CcEEEeCCCCCC-CHHHHHHHHHHHHHhC--ccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEE
Q 012478 151 IPVIGDGDNGYG-NAMNVKRTVKGYIKAG--FAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVI 227 (462)
Q Consensus 151 iPVIaD~DtGyG-~~~nv~rtVk~l~~AG--aaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vI 227 (462)
.||++-. +| ++....+.++.++++| +++|-|-=.. |...|. +..-.-..+...+-+++++++. ++-|
T Consensus 91 ~pl~~qi---~g~~~~~~~~~a~~~~~~~~~~d~ielN~~c-P~~~~~-g~~l~~~~~~~~eiv~~vr~~~-----~~pv 160 (300)
T TIGR01037 91 TPLIASV---YGSSVEEFAEVAEKLEKAPPYVDAYELNLSC-PHVKGG-GIAIGQDPELSADVVKAVKDKT-----DVPV 160 (300)
T ss_pred CcEEEEe---ecCCHHHHHHHHHHHHhccCccCEEEEECCC-CCCCCC-ccccccCHHHHHHHHHHHHHhc-----CCCE
Confidence 8999887 34 5678889999998874 9999886432 322221 1112234455555555555442 4556
Q ss_pred EEecchhhcccHHHHHHHHHHhHhcCCcEEEec----CC----C-------------C--------HHHHHHHHHhCCCC
Q 012478 228 VARTDSRQALSLEESLRRSRAFADAGADVLFID----AL----A-------------S--------KEEMKAFCEISPLV 278 (462)
Q Consensus 228 iARTDA~~~~gldeAI~RakAy~eAGAD~Ifie----~~----~-------------s--------~eei~~i~~~v~~v 278 (462)
..|.- ..+++.++-++++.++|+|+|.+. +. . + .+.+.++.+.++ +
T Consensus 161 ~vKi~----~~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~-i 235 (300)
T TIGR01037 161 FAKLS----PNVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVD-I 235 (300)
T ss_pred EEECC----CChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCC-C
Confidence 66653 245778888999999999999874 21 0 0 145566666664 5
Q ss_pred ceeeeeeecCCCCCCCCHHHHHhcCCCEEeccchHHHH
Q 012478 279 PKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGV 316 (462)
Q Consensus 279 P~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~ll~a 316 (462)
|+..| ||-.-.-+..++-+.|...|.++..++.-
T Consensus 236 pvi~~----GGI~s~~da~~~l~~GAd~V~igr~~l~~ 269 (300)
T TIGR01037 236 PIIGV----GGITSFEDALEFLMAGASAVQVGTAVYYR 269 (300)
T ss_pred CEEEE----CCCCCHHHHHHHHHcCCCceeecHHHhcC
Confidence 66543 34221123455556899998888776643
No 29
>PRK06801 hypothetical protein; Provisional
Probab=97.88 E-value=0.0039 Score=63.31 Aligned_cols=217 Identities=17% Similarity=0.216 Sum_probs=144.0
Q ss_pred HHHHHHHhCCCceEecccCChHHHHH----HHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEE
Q 012478 79 KSLRQILELPGVHQGPACFDALSAKL----VEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVI 154 (462)
Q Consensus 79 ~~LR~ll~~~~~iv~p~ayDalSArl----~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVI 154 (462)
+-|....+++-.+-+.|+||.-+++. +|+.+.+.|+..+-+.. . ..+++.+...++.+++..++||.
T Consensus 8 ~~l~~A~~~~yaV~Afn~~n~e~~~avi~AAe~~~~PvIl~~~~~~~----~-----~~~~~~~~~~~~~~a~~~~vpV~ 78 (286)
T PRK06801 8 NGLAHARKHGYALGAFNVLDSHFLRALFAAAKQERSPFIINIAEVHF----K-----YISLESLVEAVKFEAARHDIPVV 78 (286)
T ss_pred HHHHHHHHCCceEEEEeeCCHHHHHHHHHHHHHHCCCEEEEeCcchh----h-----cCCHHHHHHHHHHHHHHCCCCEE
Confidence 34555555565688889999999865 45668898886653321 1 25578889999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCe----EEEEe
Q 012478 155 GDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDI----VIVAR 230 (462)
Q Consensus 155 aD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~----vIiAR 230 (462)
+=.|+|. + ...+++.+++|+..|++ |.. | .|.+|-+++-+.+++-.+..|.+. =-++.
T Consensus 79 lHlDH~~-~----~e~i~~Ai~~GftSVm~-D~S------~------l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg 140 (286)
T PRK06801 79 LNLDHGL-H----FEAVVRALRLGFSSVMF-DGS------T------LEYEENVRQTREVVKMCHAVGVSVEAELGAVGG 140 (286)
T ss_pred EECCCCC-C----HHHHHHHHHhCCcEEEE-cCC------C------CCHHHHHHHHHHHHHHHHHcCCeEEeecCcccC
Confidence 9999985 3 34456777899999999 442 2 366777777777776665443221 01222
Q ss_pred cchh---hccc--HHHHHHHHHHhH-hcCCcEEEec-----C------CCCHHHHHHHHHhCCCCceeeeeeecCCCCCC
Q 012478 231 TDSR---QALS--LEESLRRSRAFA-DAGADVLFID-----A------LASKEEMKAFCEISPLVPKMANMLEGGGKTPI 293 (462)
Q Consensus 231 TDA~---~~~g--ldeAI~RakAy~-eAGAD~Ifie-----~------~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ 293 (462)
.|.. ...+ .---.+.|+.|. +.|+|.+-+. + .-+.+.++++.+.++ +|+ ++.|+...|.
T Consensus 141 ~e~~v~~~~~~~~~~T~pe~a~~f~~~tgvD~LAvaiGt~Hg~y~~~~~l~~e~l~~i~~~~~-~PL---VlHGGSgi~~ 216 (286)
T PRK06801 141 DEGGALYGEADSAKFTDPQLARDFVDRTGIDALAVAIGNAHGKYKGEPKLDFARLAAIHQQTG-LPL---VLHGGSGISD 216 (286)
T ss_pred CCCCcccCCcccccCCCHHHHHHHHHHHCcCEEEeccCCCCCCCCCCCCCCHHHHHHHHHhcC-CCE---EEECCCCCCH
Confidence 2210 0000 000124566666 7999999871 1 135678888888775 565 3454333443
Q ss_pred CCHHHHHhcCCCEEeccchHHHHHHHHHHHHHH
Q 012478 294 LNPLELEELGFKLVAYPLSLIGVSVRAMQDALT 326 (462)
Q Consensus 294 ls~~eL~~lGv~~V~yp~~ll~aa~~Am~~~l~ 326 (462)
-...++-++|++-|-+...+..+...++++.+.
T Consensus 217 e~~~~~i~~Gi~KINv~T~~~~a~~~~~~~~~~ 249 (286)
T PRK06801 217 ADFRRAIELGIHKINFYTGMSQAALAAVEQRMT 249 (286)
T ss_pred HHHHHHHHcCCcEEEehhHHHHHHHHHHHHHHH
Confidence 345666789999999999999999998888763
No 30
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=97.76 E-value=0.00098 Score=65.85 Aligned_cols=134 Identities=16% Similarity=0.182 Sum_probs=91.4
Q ss_pred HHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhh-cccHHHHHHH
Q 012478 167 VKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQ-ALSLEESLRR 245 (462)
Q Consensus 167 v~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~-~~gldeAI~R 245 (462)
....+++..+.||++|++.+.. |.. ...++++.++++++..++.|..++|+.-.|... ...-.+.+++
T Consensus 92 ~~~~v~~al~~Ga~~v~~~~~~-----g~~------~~~~~~~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~ 160 (258)
T TIGR01949 92 IVTTVEDAIRMGADAVSIHVNV-----GSD------TEWEQIRDLGMIAEICDDWGVPLLAMMYPRGPHIDDRDPELVAH 160 (258)
T ss_pred eeeeHHHHHHCCCCEEEEEEec-----CCc------hHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccccccHHHHHH
Confidence 4456889999999999999874 221 235677788888888776676777744332211 0111356777
Q ss_pred -HHHhHhcCCcEEEecCCCCHHHHHHHHHhCCCCceeeeeeecCCCC-CC-----CCHHHHHhcCCCEEeccchHHHH
Q 012478 246 -SRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKT-PI-----LNPLELEELGFKLVAYPLSLIGV 316 (462)
Q Consensus 246 -akAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~l~~~g~t-P~-----ls~~eL~~lGv~~V~yp~~ll~a 316 (462)
++.+.++|||.|......+.+.++++++..+ +|+. + .| |-+ .. -..+++.+.|+..++.+..++.+
T Consensus 161 ~~~~a~~~GADyikt~~~~~~~~l~~~~~~~~-iPVv--a-~G-Gi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~ 233 (258)
T TIGR01949 161 AARLGAELGADIVKTPYTGDIDSFRDVVKGCP-APVV--V-AG-GPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQH 233 (258)
T ss_pred HHHHHHHHCCCEEeccCCCCHHHHHHHHHhCC-CcEE--E-ec-CCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcC
Confidence 6899999999999987667889999988654 4542 2 23 322 11 12567779999999998887754
No 31
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=97.76 E-value=0.00076 Score=68.56 Aligned_cols=126 Identities=18% Similarity=0.191 Sum_probs=88.2
Q ss_pred CCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccH
Q 012478 160 GYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSL 239 (462)
Q Consensus 160 GyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gl 239 (462)
|-=|.....+.++.+++.|+.||.+ ||+++.-..++.+|..+-+++++++.. .++-|++-+-+ .+.
T Consensus 24 g~iD~~~l~~lv~~li~~Gv~Gi~v--------~GstGE~~~Lt~eEr~~v~~~~~~~~~---grvpvi~Gv~~---~~t 89 (309)
T cd00952 24 DTVDLDETARLVERLIAAGVDGILT--------MGTFGECATLTWEEKQAFVATVVETVA---GRVPVFVGATT---LNT 89 (309)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEE--------CcccccchhCCHHHHHHHHHHHHHHhC---CCCCEEEEecc---CCH
Confidence 4335678899999999999999998 666777778899999999888888753 45656655432 357
Q ss_pred HHHHHHHHHhHhcCCcEEEecCC----CCHHHHHH----HHHhCCCCcee-eeeeecCCCC-CCCCHHHHHhc
Q 012478 240 EESLRRSRAFADAGADVLFIDAL----ASKEEMKA----FCEISPLVPKM-ANMLEGGGKT-PILNPLELEEL 302 (462)
Q Consensus 240 deAI~RakAy~eAGAD~Ifie~~----~s~eei~~----i~~~v~~vP~~-~N~l~~~g~t-P~ls~~eL~~l 302 (462)
++++++++.++++|||++++-.+ .+.+++.+ +++..+.+|++ .|. +..+ -.++++.+.+|
T Consensus 90 ~~ai~~a~~A~~~Gad~vlv~~P~y~~~~~~~l~~yf~~va~a~~~lPv~iYn~---P~~tg~~l~~~~l~~L 159 (309)
T cd00952 90 RDTIARTRALLDLGADGTMLGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAIYAN---PEAFKFDFPRAAWAEL 159 (309)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCcCCCCCHHHHHHHHHHHHHhCCCCcEEEEcC---chhcCCCCCHHHHHHH
Confidence 99999999999999999988644 35555544 44554335653 332 2211 14667666666
No 32
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=97.75 E-value=0.0036 Score=63.59 Aligned_cols=186 Identities=21% Similarity=0.183 Sum_probs=119.8
Q ss_pred HHHHHHhCCCceEecccCChHHHHHHHHhCCcEEEec---cHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEe
Q 012478 80 SLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTS---GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGD 156 (462)
Q Consensus 80 ~LR~ll~~~~~iv~p~ayDalSArl~e~aGfdaI~vS---G~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD 156 (462)
-|-++++.| +..-+-++-+|+++|++|.=++..= -+-+- .+ |-+..-.=...++.|.+++++|||+=
T Consensus 4 ~~a~~~kgg---vimdv~~~eqa~iae~aga~avm~le~~p~d~r------~~-ggv~R~~~p~~I~~I~~~V~iPVig~ 73 (287)
T TIGR00343 4 GLAQMLKGG---VIMDVVNPEQAKIAEEAGAVAVMALERVPADIR------AS-GGVARMSDPKMIKEIMDAVSIPVMAK 73 (287)
T ss_pred hHHHHhcCC---eEEEeCCHHHHHHHHHcCceEEEeeccCchhhH------hc-CCeeecCCHHHHHHHHHhCCCCEEEE
Confidence 366777654 4567788999999999998777652 11110 11 22222223457788889999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhc
Q 012478 157 GDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQA 236 (462)
Q Consensus 157 ~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~ 236 (462)
.--|| ..-++.++++|++-| |.+ ..+.|.+++...++.- . +..+++=+.
T Consensus 74 ~kigh------~~Ea~~L~~~GvDiI---DeT----------e~lrPade~~~~~K~~------f--~vpfmad~~---- 122 (287)
T TIGR00343 74 VRIGH------FVEAQILEALGVDYI---DES----------EVLTPADWTFHIDKKK------F--KVPFVCGAR---- 122 (287)
T ss_pred eeccH------HHHHHHHHHcCCCEE---Ecc----------CCCCcHHHHHHHHHHH------c--CCCEEccCC----
Confidence 88888 666789999999999 643 2355677777776432 1 223332221
Q ss_pred ccHHHHHHHHHHhHhcCCcEEEecC----------------------------------------CCCHHHHHHHHHhCC
Q 012478 237 LSLEESLRRSRAFADAGADVLFIDA----------------------------------------LASKEEMKAFCEISP 276 (462)
Q Consensus 237 ~gldeAI~RakAy~eAGAD~Ifie~----------------------------------------~~s~eei~~i~~~v~ 276 (462)
.++||++|. ++|||+|=--+ -...+.++++++...
T Consensus 123 -~l~EAlrai----~~GadmI~Tt~e~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~~a~~~~~~~elLkei~~~~~ 197 (287)
T TIGR00343 123 -DLGEALRRI----NEGAAMIRTKGEAGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAAVAKELRVPVELLLEVLKLGK 197 (287)
T ss_pred -CHHHHHHHH----HCCCCEEeccccCCCccHHHHHHHHHHHHHHHHHHhcccchhHHhhhhcccCCCHHHHHHHHHhCC
Confidence 357777764 58999886431 023455666666544
Q ss_pred CCceeeeeeecCCC-CCCCCHHHHHhcCCCEEeccchHHH
Q 012478 277 LVPKMANMLEGGGK-TPILNPLELEELGFKLVAYPLSLIG 315 (462)
Q Consensus 277 ~vP~~~N~l~~~g~-tP~ls~~eL~~lGv~~V~yp~~ll~ 315 (462)
+|+ +|.-+| |- || -....+.++|+.-|..+...+.
T Consensus 198 -iPV-V~fAiG-GI~TP-edAa~~melGAdGVaVGSaI~k 233 (287)
T TIGR00343 198 -LPV-VNFAAG-GVATP-ADAALMMQLGADGVFVGSGIFK 233 (287)
T ss_pred -CCE-EEeccC-CCCCH-HHHHHHHHcCCCEEEEhHHhhc
Confidence 563 465665 43 44 2456788899999999988763
No 33
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=97.74 E-value=0.0077 Score=59.88 Aligned_cols=164 Identities=18% Similarity=0.156 Sum_probs=100.8
Q ss_pred CCHHHHHHHHHHHHhh-cCCcEEEeCCCCCC-CHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCC-Cc-ccCHHHHH
Q 012478 133 ISYGEMVDQGQLITQA-VSIPVIGDGDNGYG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRG-RK-VVSREEAV 208 (462)
Q Consensus 133 vsl~Eml~~~~~I~ra-~~iPVIaD~DtGyG-~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~g-k~-Lvp~ee~~ 208 (462)
...+++++..+...+. .+.||++-+ .| ++....+.++.++++|+++|-|-=. |-|... +. +...+...
T Consensus 80 ~g~~~~~~~i~~~~~~~~~~pvi~si---~g~~~~~~~~~a~~~~~~G~d~ielN~~-----cP~~~~~~~~~~~~~~~~ 151 (289)
T cd02810 80 LGLDVWLQDIAKAKKEFPGQPLIASV---GGSSKEDYVELARKIERAGAKALELNLS-----CPNVGGGRQLGQDPEAVA 151 (289)
T ss_pred cCHHHHHHHHHHHHhccCCCeEEEEe---ccCCHHHHHHHHHHHHHhCCCEEEEEcC-----CCCCCCCcccccCHHHHH
Confidence 3467777777666555 579999886 23 5678888999999999999988544 444321 22 22344444
Q ss_pred HHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEecCCC-------------------------
Q 012478 209 MRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALA------------------------- 263 (462)
Q Consensus 209 ~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~~~------------------------- 263 (462)
+-|++++++. +..+.+--++. .+.++.++-++++.++|||.|.+.+..
T Consensus 152 eiv~~vr~~~---~~pv~vKl~~~----~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~ 224 (289)
T cd02810 152 NLLKAVKAAV---DIPLLVKLSPY----FDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAP 224 (289)
T ss_pred HHHHHHHHcc---CCCEEEEeCCC----CCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHH
Confidence 4555555442 22344443443 245788899999999999999975320
Q ss_pred ----CHHHHHHHHHhCC-CCceeeeeeecCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 012478 264 ----SKEEMKAFCEISP-LVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (462)
Q Consensus 264 ----s~eei~~i~~~v~-~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~ll~ 315 (462)
..+.++++.+.++ .+|+..+ ||-+-.-...++-++|+..|..+..++.
T Consensus 225 ~~~~~~~~v~~i~~~~~~~ipiia~----GGI~~~~da~~~l~~GAd~V~vg~a~~~ 277 (289)
T cd02810 225 IRPLALRWVARLAARLQLDIPIIGV----GGIDSGEDVLEMLMAGASAVQVATALMW 277 (289)
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEE----CCCCCHHHHHHHHHcCccHheEcHHHHh
Confidence 1334566666664 3555432 3432222456666788888877665554
No 34
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=97.72 E-value=0.0013 Score=66.95 Aligned_cols=186 Identities=23% Similarity=0.215 Sum_probs=120.8
Q ss_pred HHHHHHHhCCCceEecccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCC----CCCCHHHHHHHHHHHHhhcCCcEE
Q 012478 79 KSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDT----GFISYGEMVDQGQLITQAVSIPVI 154 (462)
Q Consensus 79 ~~LR~ll~~~~~iv~p~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~----g~vsl~Eml~~~~~I~ra~~iPVI 154 (462)
.-|-++++.+ ++.-+-++-.|+++|++|++++.+- .|.|.- |-+.+-.=.+.++.|.+++++|||
T Consensus 10 ~g~a~m~kgg---vimdv~~~~~a~iae~~g~~~v~~~--------~~~psd~~~~gg~~Rm~~p~~I~aIk~~V~iPVi 78 (293)
T PRK04180 10 RGFAEMLKGG---VIMDVVNAEQAKIAEEAGAVAVMAL--------ERVPADIRAAGGVARMADPKMIEEIMDAVSIPVM 78 (293)
T ss_pred HHHHHHhcCC---eEEEeCCHHHHHHHHHhChHHHHHc--------cCCCchHhhcCCeeecCCHHHHHHHHHhCCCCeE
Confidence 3577778655 4567788999999999999876541 233321 122222234456688889999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchh
Q 012478 155 GDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSR 234 (462)
Q Consensus 155 aD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~ 234 (462)
+=.--|| ..-++.++++|++-| |.+ ..+.|.+++...++.- . +..+++=+.
T Consensus 79 gk~Righ------~~Ea~~L~~~GvDiI---D~T----------e~lrpad~~~~~~K~~------f--~~~fmad~~-- 129 (293)
T PRK04180 79 AKARIGH------FVEAQILEALGVDYI---DES----------EVLTPADEEYHIDKWD------F--TVPFVCGAR-- 129 (293)
T ss_pred EeehhhH------HHHHHHHHHcCCCEE---ecc----------CCCCchHHHHHHHHHH------c--CCCEEccCC--
Confidence 9888888 666789999999999 543 1355667776666432 1 233333222
Q ss_pred hcccHHHHHHHHHHhHhcCCcEEEec---------------------------------------CCCCHHHHHHHHHhC
Q 012478 235 QALSLEESLRRSRAFADAGADVLFID---------------------------------------ALASKEEMKAFCEIS 275 (462)
Q Consensus 235 ~~~gldeAI~RakAy~eAGAD~Ifie---------------------------------------~~~s~eei~~i~~~v 275 (462)
.++||++|. ++|||+|=-- .-.+.+.++++++..
T Consensus 130 ---~l~EAlrai----~~GadmI~Ttge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~ 202 (293)
T PRK04180 130 ---NLGEALRRI----AEGAAMIRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELG 202 (293)
T ss_pred ---CHHHHHHHH----HCCCCeeeccCCCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhC
Confidence 356766664 5899988654 112445667777765
Q ss_pred CCCceeeeeeecCCCCCCCCHHHHHhcCCCEEeccchHH
Q 012478 276 PLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLI 314 (462)
Q Consensus 276 ~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~ll 314 (462)
. +|+ +|+.+++=.+| -...++.++|+.-|..+...+
T Consensus 203 ~-iPV-V~~AeGGI~TP-edaa~vme~GAdgVaVGSaI~ 238 (293)
T PRK04180 203 R-LPV-VNFAAGGIATP-ADAALMMQLGADGVFVGSGIF 238 (293)
T ss_pred C-CCE-EEEEeCCCCCH-HHHHHHHHhCCCEEEEcHHhh
Confidence 4 563 46666532244 245678889999999988876
No 35
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=97.71 E-value=0.0085 Score=60.24 Aligned_cols=200 Identities=16% Similarity=0.202 Sum_probs=121.9
Q ss_pred cccCCh--HHHHHHHHhCCcEEEeccHHHHhhhccCCCC---------------CCCCHHHHHHHHHHHHhhcCCcEEEe
Q 012478 94 PACFDA--LSAKLVEKSGFSFCFTSGFSISAARLALPDT---------------GFISYGEMVDQGQLITQAVSIPVIGD 156 (462)
Q Consensus 94 p~ayDa--lSArl~e~aGfdaI~vSG~avSas~lG~PD~---------------g~vsl~Eml~~~~~I~ra~~iPVIaD 156 (462)
.|.+|. -..+.+.++||-++-+.+...- -..|.|.- .....+++++..+...+..+.||++-
T Consensus 19 ag~~~~~~~~~~~~~~~g~g~v~~kti~~~-~~~g~~~pr~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~~~~p~i~s 97 (301)
T PRK07259 19 SGTFGFGGEYARFYDLNGLGAIVTKSTTLE-PREGNPTPRIAETPGGMLNAIGLQNPGVDAFIEEELPWLEEFDTPIIAN 97 (301)
T ss_pred CcCCCCCHHHHHHhhhcCCcEEEeCCCCCC-CCCCCCCCcEEecCCceeecCCCCCcCHHHHHHHHHHHHhccCCcEEEE
Confidence 344553 3355567889988888875543 23455531 11335667766666545557999998
Q ss_pred CCCCCCCHHHHHHHHHHHHHhC-ccEEEeCCCCCCCCCCCCC--CCcc-cCHHHHHHHHHHHHHHHHhhCCCeEEEEecc
Q 012478 157 GDNGYGNAMNVKRTVKGYIKAG-FAGIILEDQVSPKGCGHTR--GRKV-VSREEAVMRIKAAVDARKESGSDIVIVARTD 232 (462)
Q Consensus 157 ~DtGyG~~~nv~rtVk~l~~AG-aaGI~IEDq~~PKrCGH~~--gk~L-vp~ee~~~kI~AA~~Ar~~~g~d~vIiARTD 232 (462)
+ .|+ ++....+.++++.++| +++|-|-=. |-|.. |..+ -..+...+-|++++++. ++-|..|.-
T Consensus 98 i-~g~-~~~~~~~~a~~~~~aG~~D~iElN~~-----cP~~~~gg~~~~~~~~~~~eiv~~vr~~~-----~~pv~vKl~ 165 (301)
T PRK07259 98 V-AGS-TEEEYAEVAEKLSKAPNVDAIELNIS-----CPNVKHGGMAFGTDPELAYEVVKAVKEVV-----KVPVIVKLT 165 (301)
T ss_pred e-ccC-CHHHHHHHHHHHhccCCcCEEEEECC-----CCCCCCCccccccCHHHHHHHHHHHHHhc-----CCCEEEEcC
Confidence 7 232 4678888999999999 999988543 33321 2222 24454555555555442 455666643
Q ss_pred hhhcccHHHHHHHHHHhHhcCCcEEEec----CC-------------------------CCHHHHHHHHHhCCCCceeee
Q 012478 233 SRQALSLEESLRRSRAFADAGADVLFID----AL-------------------------ASKEEMKAFCEISPLVPKMAN 283 (462)
Q Consensus 233 A~~~~gldeAI~RakAy~eAGAD~Ifie----~~-------------------------~s~eei~~i~~~v~~vP~~~N 283 (462)
. .+++.++-++.++++|||.|.+. +. ...+.++++.+.++ +|+..|
T Consensus 166 ~----~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~-ipvi~~ 240 (301)
T PRK07259 166 P----NVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVD-IPIIGM 240 (301)
T ss_pred C----CchhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCC-CCEEEE
Confidence 2 34577788889999999988641 11 02356677777664 666543
Q ss_pred eeecCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 012478 284 MLEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (462)
Q Consensus 284 ~l~~~g~tP~ls~~eL~~lGv~~V~yp~~ll~ 315 (462)
||-.-.-...++-+.|...|..+..++.
T Consensus 241 ----GGI~~~~da~~~l~aGAd~V~igr~ll~ 268 (301)
T PRK07259 241 ----GGISSAEDAIEFIMAGASAVQVGTANFY 268 (301)
T ss_pred ----CCCCCHHHHHHHHHcCCCceeEcHHHhc
Confidence 3432223456666789998888777665
No 36
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=97.70 E-value=0.0014 Score=65.58 Aligned_cols=123 Identities=24% Similarity=0.256 Sum_probs=85.6
Q ss_pred CHHHHHHHHHHHHHh-CccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHH
Q 012478 163 NAMNVKRTVKGYIKA-GFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEE 241 (462)
Q Consensus 163 ~~~nv~rtVk~l~~A-GaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~glde 241 (462)
|.....+.++.+++. |+.||.+ ||+++.-...+.+|-.+-+++++++.. ..+-|++=+-+ .+.+|
T Consensus 19 D~~~~~~~i~~l~~~~Gv~gi~~--------~GstGE~~~Lt~~Er~~~~~~~~~~~~---~~~~viagv~~---~~~~~ 84 (288)
T cd00954 19 NEDVLRAIVDYLIEKQGVDGLYV--------NGSTGEGFLLSVEERKQIAEIVAEAAK---GKVTLIAHVGS---LNLKE 84 (288)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEE--------CcCCcCcccCCHHHHHHHHHHHHHHhC---CCCeEEeccCC---CCHHH
Confidence 567788999999999 9999988 677776678889998888888888754 35666664432 35789
Q ss_pred HHHHHHHhHhcCCcEEEecCC----CCHHHHHH----HHHhCCCCceee-eeeecCCCC-CCCCHHHHHhc
Q 012478 242 SLRRSRAFADAGADVLFIDAL----ASKEEMKA----FCEISPLVPKMA-NMLEGGGKT-PILNPLELEEL 302 (462)
Q Consensus 242 AI~RakAy~eAGAD~Ifie~~----~s~eei~~----i~~~v~~vP~~~-N~l~~~g~t-P~ls~~eL~~l 302 (462)
+++.++.++++|||++++-.+ .+.+++.+ +++.+|.+|+++ |. +..+ -.++++.+.+|
T Consensus 85 ai~~a~~a~~~Gad~v~~~~P~y~~~~~~~i~~~~~~v~~a~~~lpi~iYn~---P~~tg~~l~~~~~~~L 152 (288)
T cd00954 85 SQELAKHAEELGYDAISAITPFYYKFSFEEIKDYYREIIAAAASLPMIIYHI---PALTGVNLTLEQFLEL 152 (288)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCEEEEeC---ccccCCCCCHHHHHHH
Confidence 999999999999999986433 35555555 445553356543 32 2211 24666655554
No 37
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=97.69 E-value=0.0047 Score=62.68 Aligned_cols=183 Identities=22% Similarity=0.206 Sum_probs=121.3
Q ss_pred HHHHHhCCCceEecccCChHHHHHHHHhCCcEEEe-----ccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEE
Q 012478 81 LRQILELPGVHQGPACFDALSAKLVEKSGFSFCFT-----SGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIG 155 (462)
Q Consensus 81 LR~ll~~~~~iv~p~ayDalSArl~e~aGfdaI~v-----SG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIa 155 (462)
|-++|+.+ ++..+-+.-+|+++|++|.=++.+ +-.- -.+.+-.-.=+.+++.|.+.+++|||+
T Consensus 3 ~~~~~~~g---~~~~v~~~~qa~~ae~aga~~v~~~~~~~~~~~---------~~~~v~R~~~~~~I~~Ik~~V~iPVIG 70 (283)
T cd04727 3 FAQMLKGG---VIMDVTNAEQARIAEEAGAVAVMALERVPADIR---------AAGGVARMADPKMIKEIMDAVSIPVMA 70 (283)
T ss_pred HHHHhcCC---eEEEeCCHHHHHHHHHcCceEEeeeccCchhhh---------hcCCeeecCCHHHHHHHHHhCCCCeEE
Confidence 45667654 456788999999999999888776 2111 011222222345778888899999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhh
Q 012478 156 DGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQ 235 (462)
Q Consensus 156 D~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~ 235 (462)
=.--|| ++-++.++++|++-| |.+. .+-|.+++...|+.- -+..++|=+..
T Consensus 71 i~K~~~------~~Ea~~L~eaGvDiI---DaT~----------r~rP~~~~~~~iK~~--------~~~l~MAD~st-- 121 (283)
T cd04727 71 KVRIGH------FVEAQILEALGVDMI---DESE----------VLTPADEEHHIDKHK--------FKVPFVCGARN-- 121 (283)
T ss_pred eeehhH------HHHHHHHHHcCCCEE---eccC----------CCCcHHHHHHHHHHH--------cCCcEEccCCC--
Confidence 888887 677889999999999 6431 234567787777532 14566654433
Q ss_pred cccHHHHHHHHHHhHhcCCcEEEecC---------------------------------------CCCHHHHHHHHHhCC
Q 012478 236 ALSLEESLRRSRAFADAGADVLFIDA---------------------------------------LASKEEMKAFCEISP 276 (462)
Q Consensus 236 ~~gldeAI~RakAy~eAGAD~Ifie~---------------------------------------~~s~eei~~i~~~v~ 276 (462)
++|++++ .++|||+|=-.. -.+.+.++++++.++
T Consensus 122 ---leEal~a----~~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~~ 194 (283)
T cd04727 122 ---LGEALRR----ISEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLGR 194 (283)
T ss_pred ---HHHHHHH----HHCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhcC
Confidence 4665555 569999986432 024466788877765
Q ss_pred CCceeeeeeecCCC-CCCCCHHHHHhcCCCEEeccchHHH
Q 012478 277 LVPKMANMLEGGGK-TPILNPLELEELGFKLVAYPLSLIG 315 (462)
Q Consensus 277 ~vP~~~N~l~~~g~-tP~ls~~eL~~lGv~~V~yp~~ll~ 315 (462)
+|+ +|+-++ |- +| -...++.++|+.-|..+..++.
T Consensus 195 -iPV-V~iAeG-GI~Tp-ena~~v~e~GAdgVaVGSAI~~ 230 (283)
T cd04727 195 -LPV-VNFAAG-GVATP-ADAALMMQLGADGVFVGSGIFK 230 (283)
T ss_pred -CCe-EEEEeC-CCCCH-HHHHHHHHcCCCEEEEcHHhhc
Confidence 564 233444 43 43 2457788899999999988764
No 38
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=97.69 E-value=0.028 Score=57.21 Aligned_cols=213 Identities=21% Similarity=0.253 Sum_probs=141.2
Q ss_pred HHHHHHHhCCCceEecccCChHHHHH----HHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEE
Q 012478 79 KSLRQILELPGVHQGPACFDALSAKL----VEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVI 154 (462)
Q Consensus 79 ~~LR~ll~~~~~iv~p~ayDalSArl----~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVI 154 (462)
+-|....+++-.+.+.|+|+.-+++. +|+.+.+.|+..+-... ....++.+...++..++..++||.
T Consensus 8 ~ll~~A~~~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIl~~~~~~~---------~~~g~~~~~~~~~~~A~~~~vPV~ 78 (283)
T PRK07998 8 ILLDRIQEKHVLAGAFNTTNLETTISILNAIERSGLPNFIQIAPTNA---------QLSGYDYIYEIVKRHADKMDVPVS 78 (283)
T ss_pred HHHHHHHHCCCEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECcHhHH---------hhCCHHHHHHHHHHHHHHCCCCEE
Confidence 34555555665688889999998854 46678898887643321 123466677788888888999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCe-EEEEec--
Q 012478 155 GDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDI-VIVART-- 231 (462)
Q Consensus 155 aD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~-vIiART-- 231 (462)
+=.|.|. + .+.+++.+++|...|.| |.. | .|.+|-++.-+.+++-+...|... .=+++.
T Consensus 79 lHLDH~~-~----~e~i~~Ai~~GftSVM~-DgS------~------l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg 140 (283)
T PRK07998 79 LHLDHGK-T----FEDVKQAVRAGFTSVMI-DGA------A------LPFEENIAFTKEAVDFAKSYGVPVEAELGAILG 140 (283)
T ss_pred EECcCCC-C----HHHHHHHHHcCCCEEEE-eCC------C------CCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCC
Confidence 9999984 3 33444556889999999 553 2 467888888888887776544211 011221
Q ss_pred --chh-h----cccHHHHHHHHHHhH-hcCCcEEEec-----CC-----CCHHHHHHHHHhCCCCceeeeeeecCCCCCC
Q 012478 232 --DSR-Q----ALSLEESLRRSRAFA-DAGADVLFID-----AL-----ASKEEMKAFCEISPLVPKMANMLEGGGKTPI 293 (462)
Q Consensus 232 --DA~-~----~~gldeAI~RakAy~-eAGAD~Ifie-----~~-----~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ 293 (462)
|.. . -...++ ++.|. +.|+|++-+- |+ -+.+.++++.+.++ +|+ ++.|+..+|.
T Consensus 141 ~ed~~~~~~~~~T~pe~----a~~Fv~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~~~-vPL---VlHGgSG~~~ 212 (283)
T PRK07998 141 KEDDHVSEADCKTEPEK----VKDFVERTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAEVSP-VPL---VIHGGSGIPP 212 (283)
T ss_pred ccccccccccccCCHHH----HHHHHHHhCcCeeehhccccccCCCCCCcCHHHHHHHHhhCC-CCE---EEeCCCCCCH
Confidence 110 0 123344 45555 6899987642 21 14588889988875 665 3555433443
Q ss_pred CCHHHHHhcCCCEEeccchHHHHHHHHHHHHHH
Q 012478 294 LNPLELEELGFKLVAYPLSLIGVSVRAMQDALT 326 (462)
Q Consensus 294 ls~~eL~~lGv~~V~yp~~ll~aa~~Am~~~l~ 326 (462)
-...+.-+.|++-|-+...+..+...++++.+.
T Consensus 213 e~~~~ai~~Gi~KiNi~Tel~~a~~~~~~~~l~ 245 (283)
T PRK07998 213 EILRSFVNYKVAKVNIASDLRKAFITTVGKAYV 245 (283)
T ss_pred HHHHHHHHcCCcEEEECHHHHHHHHHHHHHHHH
Confidence 334445578999999999999999999988864
No 39
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=97.66 E-value=0.0013 Score=66.14 Aligned_cols=140 Identities=16% Similarity=0.178 Sum_probs=103.6
Q ss_pred chHHHHHHHHhCCCceEecccCChHHHHHHHHhCCcEEEeccHHHHh-------hhccCCC---CCC-CCHHHHHHHHHH
Q 012478 76 SPAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISA-------ARLALPD---TGF-ISYGEMVDQGQL 144 (462)
Q Consensus 76 ~~a~~LR~ll~~~~~iv~p~ayDalSArl~e~aGfdaI~vSG~avSa-------s~lG~PD---~g~-vsl~Eml~~~~~ 144 (462)
+.-+.|++..++-+..++-.++|..++..+++. .+.+.+++.-+.. +.+|.|= .+. .+++|++..++.
T Consensus 78 ~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~-vd~~kIga~~~~n~~LL~~~a~~gkPV~lk~G~~~s~~e~~~A~e~ 156 (266)
T PRK13398 78 EGLKILKEVGDKYNLPVVTEVMDTRDVEEVADY-ADMLQIGSRNMQNFELLKEVGKTKKPILLKRGMSATLEEWLYAAEY 156 (266)
T ss_pred HHHHHHHHHHHHcCCCEEEeeCChhhHHHHHHh-CCEEEECcccccCHHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHH
Confidence 445678888888888888899999999999998 9999999755443 2345553 243 488888887766
Q ss_pred HHh----------------------------------hcCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCC
Q 012478 145 ITQ----------------------------------AVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSP 190 (462)
Q Consensus 145 I~r----------------------------------a~~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~P 190 (462)
|.. ..++||++|.+++-|....+....+.-+.+||.|+.||=-..|
T Consensus 157 i~~~Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~~lk~~~~~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~~p 236 (266)
T PRK13398 157 IMSEGNENVVLCERGIRTFETYTRNTLDLAAVAVIKELSHLPIIVDPSHATGRRELVIPMAKAAIAAGADGLMIEVHPEP 236 (266)
T ss_pred HHhcCCCeEEEEECCCCCCCCCCHHHHHHHHHHHHHhccCCCEEEeCCCcccchhhHHHHHHHHHHcCCCEEEEeccCCc
Confidence 642 1468999999999887777777888888999999999977655
Q ss_pred CCCCCCCCCcccCHHHHHHHHHHHHHH
Q 012478 191 KGCGHTRGRKVVSREEAVMRIKAAVDA 217 (462)
Q Consensus 191 KrCGH~~gk~Lvp~ee~~~kI~AA~~A 217 (462)
.+-. .+++.-++++|+..-++.++..
T Consensus 237 d~a~-~D~~~sl~p~~l~~l~~~i~~~ 262 (266)
T PRK13398 237 EKAL-SDARQTLNFEEMKELVDELKPM 262 (266)
T ss_pred cccC-CchhhcCCHHHHHHHHHHHHHH
Confidence 4433 4566677777776666555544
No 40
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=97.65 E-value=0.024 Score=57.72 Aligned_cols=217 Identities=16% Similarity=0.154 Sum_probs=143.6
Q ss_pred HHHHHHHHhCCCceEecccCChHHHHH----HHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcE
Q 012478 78 AKSLRQILELPGVHQGPACFDALSAKL----VEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPV 153 (462)
Q Consensus 78 a~~LR~ll~~~~~iv~p~ayDalSArl----~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPV 153 (462)
.+-|+...+++-.+.+.|+|+.-+++. +|+.+-+.|+..+-+.. ..+.++.+...++.+++..++||
T Consensus 7 k~iL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~---------~~~~~~~~~~~~~~~a~~~~VPV 77 (286)
T PRK12738 7 KYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTF---------KHIALEEIYALCSAYSTTYNMPL 77 (286)
T ss_pred HHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcCcchh---------hhCCHHHHHHHHHHHHHHCCCCE
Confidence 345666666666788999999999865 46678998886543211 12456677778888888889999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCC----CeEEEE
Q 012478 154 IGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGS----DIVIVA 229 (462)
Q Consensus 154 IaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~----d~vIiA 229 (462)
.+=.|+|. + .+.+++.+++|...|.| |.. | .|.||=+++-+.+++-++..|. ++=-++
T Consensus 78 alHLDHg~-~----~e~i~~ai~~GFtSVM~-DgS------~------lp~eeNi~~T~evv~~Ah~~gv~VEaElG~ig 139 (286)
T PRK12738 78 ALHLDHHE-S----LDDIRRKVHAGVRSAMI-DGS------H------FPFAENVKLVKSVVDFCHSQDCSVEAELGRLG 139 (286)
T ss_pred EEECCCCC-C----HHHHHHHHHcCCCeEee-cCC------C------CCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeC
Confidence 99999995 3 44556677899999999 542 2 3567777777777766654331 111122
Q ss_pred ecchh---hc-cc-HHHHHHHHHHhHh-cCCcEEEec-----CC------CCHHHHHHHHHhCCCCceeeeeeecCCCCC
Q 012478 230 RTDSR---QA-LS-LEESLRRSRAFAD-AGADVLFID-----AL------ASKEEMKAFCEISPLVPKMANMLEGGGKTP 292 (462)
Q Consensus 230 RTDA~---~~-~g-ldeAI~RakAy~e-AGAD~Ifie-----~~------~s~eei~~i~~~v~~vP~~~N~l~~~g~tP 292 (462)
..+.. .. .. +. --+.|+.|.+ .|+|++-+- |. -+-+.+++|.+.++ +|+ ++.|+..+|
T Consensus 140 g~ed~~~~~~~~~~~T-~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~~-vPL---VLHGgSG~~ 214 (286)
T PRK12738 140 GVEDDMSVDAESAFLT-DPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVD-VPL---VLHGASDVP 214 (286)
T ss_pred CccCCcccccchhcCC-CHHHHHHHHHHhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHhC-CCE---EEeCCCCCC
Confidence 21111 00 00 00 1345666764 699988652 22 24578888888874 675 566643344
Q ss_pred CCCHHHHHhcCCCEEeccchHHHHHHHHHHHHHH
Q 012478 293 ILNPLELEELGFKLVAYPLSLIGVSVRAMQDALT 326 (462)
Q Consensus 293 ~ls~~eL~~lGv~~V~yp~~ll~aa~~Am~~~l~ 326 (462)
.-.+.+.-++|++-|-+..-+..+..+++++.+.
T Consensus 215 ~e~~~kai~~GI~KiNi~T~l~~a~~~~~~~~~~ 248 (286)
T PRK12738 215 DEFVRRTIELGVTKVNVATELKIAFAGAVKAWFA 248 (286)
T ss_pred HHHHHHHHHcCCeEEEeCcHHHHHHHHHHHHHHH
Confidence 3334445578999999999999999999998864
No 41
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=97.64 E-value=0.035 Score=56.27 Aligned_cols=216 Identities=19% Similarity=0.217 Sum_probs=140.0
Q ss_pred HHHHHHhCCCceEecccCChHHHHH----HHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEE
Q 012478 80 SLRQILELPGVHQGPACFDALSAKL----VEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIG 155 (462)
Q Consensus 80 ~LR~ll~~~~~iv~p~ayDalSArl----~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIa 155 (462)
-|....+.+-.+.+.|+||.-+++. +|+.+.+.|+-.+-+.. ...+++.+...++.+++..++||.+
T Consensus 4 lL~~A~~~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIi~~~~~~~---------~~~~~~~~~~~~~~~a~~~~VPV~l 74 (276)
T cd00947 4 LLKKAREGGYAVGAFNINNLETLKAILEAAEETRSPVILQISEGAI---------KYAGLELLVAMVKAAAERASVPVAL 74 (276)
T ss_pred HHHHHHHCCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcCcchh---------hhCCHHHHHHHHHHHHHHCCCCEEE
Confidence 3455555565688999999999865 46678998886643321 1233677888888888888999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCC----CeEEEE-e
Q 012478 156 DGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGS----DIVIVA-R 230 (462)
Q Consensus 156 D~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~----d~vIiA-R 230 (462)
=.|+|. +. +.+++.+++|...|.| |.. | .|.+|=+++-+.+++-.+..|. ++=-++ -
T Consensus 75 HLDH~~-~~----~~i~~ai~~GftSVMi-D~S------~------l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~ 136 (276)
T cd00947 75 HLDHGS-SF----ELIKRAIRAGFSSVMI-DGS------H------LPFEENVAKTKEVVELAHAYGVSVEAELGRIGGE 136 (276)
T ss_pred ECCCCC-CH----HHHHHHHHhCCCEEEe-CCC------C------CCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCc
Confidence 999994 43 3444567899999999 432 2 4677777776666666654331 111111 1
Q ss_pred cchhhc-ccHHHHHHHHHHhHh-cCCcEEEe-----cCC-------CCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCH
Q 012478 231 TDSRQA-LSLEESLRRSRAFAD-AGADVLFI-----DAL-------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNP 296 (462)
Q Consensus 231 TDA~~~-~gldeAI~RakAy~e-AGAD~Ifi-----e~~-------~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~ 296 (462)
.|.... ..+---.+.|+.|.+ .|+|++-+ ++. -+.+.++++.+.++ +|+ ++.|+..+|.-..
T Consensus 137 e~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~~-vPL---VlHGgSG~~~e~~ 212 (276)
T cd00947 137 EDGVVGDEGLLTDPEEAEEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERVN-VPL---VLHGGSGIPDEQI 212 (276)
T ss_pred cCCcccccccCCCHHHHHHHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHhC-CCE---EEeCCCCCCHHHH
Confidence 111000 000001345777775 59998873 332 24578888888875 665 4565333332234
Q ss_pred HHHHhcCCCEEeccchHHHHHHHHHHHHHH
Q 012478 297 LELEELGFKLVAYPLSLIGVSVRAMQDALT 326 (462)
Q Consensus 297 ~eL~~lGv~~V~yp~~ll~aa~~Am~~~l~ 326 (462)
.++-+.|++-|-+...+..+.+.++++.+.
T Consensus 213 ~~ai~~Gi~KiNi~T~l~~a~~~~~~~~~~ 242 (276)
T cd00947 213 RKAIKLGVCKININTDLRLAFTAALREYLA 242 (276)
T ss_pred HHHHHcCCeEEEeChHHHHHHHHHHHHHHH
Confidence 445578999999999999999999988864
No 42
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=97.64 E-value=0.039 Score=55.95 Aligned_cols=212 Identities=14% Similarity=0.167 Sum_probs=134.9
Q ss_pred HHHHHHHhCCCceEecccCChHHHHH----HHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEE
Q 012478 79 KSLRQILELPGVHQGPACFDALSAKL----VEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVI 154 (462)
Q Consensus 79 ~~LR~ll~~~~~iv~p~ayDalSArl----~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVI 154 (462)
+-|....+.+-.+-+.|+||.-+++. +|+.+-+.|+..+-.. .-+ .+++.+...++..++..++||.
T Consensus 8 ~~l~~A~~~~yaV~Afn~~n~e~~~avi~aAe~~~~Pvii~~~~~~----~~~-----~~~~~~~~~~~~~a~~~~vpv~ 78 (281)
T PRK06806 8 ELLKKANQENYGVGAFSVANMEMVMGAIKAAEELNSPIILQIAEVR----LNH-----SPLHLIGPLMVAAAKQAKVPVA 78 (281)
T ss_pred HHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcch----hcc-----CChHHHHHHHHHHHHHCCCCEE
Confidence 34555555665688999999999865 4667888888664321 112 3455555566677778899999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCC----CeEEEEe
Q 012478 155 GDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGS----DIVIVAR 230 (462)
Q Consensus 155 aD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~----d~vIiAR 230 (462)
+=.|+|. + .+.+++.+++|+..|+|-+.. .|.+|.++.-+.+++-.+..|. +..-++.
T Consensus 79 lHlDH~~-~----~e~i~~Al~~G~tsVm~d~s~-------------~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~ 140 (281)
T PRK06806 79 VHFDHGM-T----FEKIKEALEIGFTSVMFDGSH-------------LPLEENIQKTKEIVELAKQYGATVEAEIGRVGG 140 (281)
T ss_pred EECCCCC-C----HHHHHHHHHcCCCEEEEcCCC-------------CCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECC
Confidence 9999985 3 345667778999999996542 2456766666666666554331 2233332
Q ss_pred cchh------hcccHHHHHHHHHHhH-hcCCcEEEe-----------cCCCCHHHHHHHHHhCCCCceeeeeeecCCCCC
Q 012478 231 TDSR------QALSLEESLRRSRAFA-DAGADVLFI-----------DALASKEEMKAFCEISPLVPKMANMLEGGGKTP 292 (462)
Q Consensus 231 TDA~------~~~gldeAI~RakAy~-eAGAD~Ifi-----------e~~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP 292 (462)
.|.. ..+..+ .++.+. +.|+|.+-+ ...-+.+.++++.+.++ +|+. +.|+...|
T Consensus 141 ~d~~~~~~g~s~t~~e----ea~~f~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~-iPlV---~hG~SGI~ 212 (281)
T PRK06806 141 SEDGSEDIEMLLTSTT----EAKRFAEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVH-IPLV---LHGGSGIS 212 (281)
T ss_pred ccCCcccccceeCCHH----HHHHHHHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcC-CCEE---EECCCCCC
Confidence 2211 112333 466665 469999977 11236788999998875 5643 33311223
Q ss_pred CCCHHHHHhcCCCEEeccchHHHHHHHHHHHHH
Q 012478 293 ILNPLELEELGFKLVAYPLSLIGVSVRAMQDAL 325 (462)
Q Consensus 293 ~ls~~eL~~lGv~~V~yp~~ll~aa~~Am~~~l 325 (462)
.-...++.+.|+.-|-+...+..+...++++.+
T Consensus 213 ~e~~~~~i~~G~~kinv~T~i~~a~~~a~~~~~ 245 (281)
T PRK06806 213 PEDFKKCIQHGIRKINVATATFNSVITAVNNLV 245 (281)
T ss_pred HHHHHHHHHcCCcEEEEhHHHHHHHHHHHHHHH
Confidence 234566788999999998888876665555544
No 43
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=97.63 E-value=0.024 Score=57.73 Aligned_cols=217 Identities=12% Similarity=0.132 Sum_probs=142.1
Q ss_pred HHHHHHHhCCCceEecccCChHHHHH----HHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEE
Q 012478 79 KSLRQILELPGVHQGPACFDALSAKL----VEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVI 154 (462)
Q Consensus 79 ~~LR~ll~~~~~iv~p~ayDalSArl----~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVI 154 (462)
+-|....+.+-.+.+.|+|+.-+++. +|+.+.+.|+..+-.. +.+ ..++.+...++.+++..++||.
T Consensus 8 ~il~~A~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~----~~~-----~g~~~~~~~~~~~A~~~~VPV~ 78 (284)
T PRK09195 8 QMLNNAQRGGYAVPAFNIHNLETMQVVVETAAELHSPVIIAGTPGT----FSY-----AGTEYLLAIVSAAAKQYHHPLA 78 (284)
T ss_pred HHHHHHHHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcChhH----Hhh-----CCHHHHHHHHHHHHHHCCCCEE
Confidence 44566666666688899999999865 4667889888665332 122 3355677888888888899999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCC----CeEEEEe
Q 012478 155 GDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGS----DIVIVAR 230 (462)
Q Consensus 155 aD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~----d~vIiAR 230 (462)
+=.|+|. + .+.+++.+++|...|.| |.. | .|.||=+++-+.+++-++..|. ++=-++.
T Consensus 79 lHLDHg~-~----~e~i~~Ai~~GftSVM~-DgS------~------l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg 140 (284)
T PRK09195 79 LHLDHHE-K----FDDIAQKVRSGVRSVMI-DGS------H------LPFAQNISLVKEVVDFCHRFDVSVEAELGRLGG 140 (284)
T ss_pred EECCCCC-C----HHHHHHHHHcCCCEEEe-CCC------C------CCHHHHHHHHHHHHHHHHHcCCEEEEEEecccC
Confidence 9999996 3 35566777899999999 542 3 3567777776666666654321 1111222
Q ss_pred cchh-hcccHH---HHHHHHHHhHh-cCCcEEEe-----cCC------CCHHHHHHHHHhCCCCceeeeeeecCCCCCCC
Q 012478 231 TDSR-QALSLE---ESLRRSRAFAD-AGADVLFI-----DAL------ASKEEMKAFCEISPLVPKMANMLEGGGKTPIL 294 (462)
Q Consensus 231 TDA~-~~~gld---eAI~RakAy~e-AGAD~Ifi-----e~~------~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~l 294 (462)
.+.. ....-+ --.+.|+.|.+ .|+|++-+ +|+ -+.+.+++|.+.++ +|+ ++.|+..+|.-
T Consensus 141 ~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~-vPL---VLHGgSG~~~e 216 (284)
T PRK09195 141 QEDDLQVDEADALYTDPAQAREFVEATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWVN-IPL---VLHGASGLPTK 216 (284)
T ss_pred cccCcccccccccCCCHHHHHHHHHHHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHhC-CCe---EEecCCCCCHH
Confidence 1111 000000 01345667775 79998764 333 25678888888775 675 46654334433
Q ss_pred CHHHHHhcCCCEEeccchHHHHHHHHHHHHHH
Q 012478 295 NPLELEELGFKLVAYPLSLIGVSVRAMQDALT 326 (462)
Q Consensus 295 s~~eL~~lGv~~V~yp~~ll~aa~~Am~~~l~ 326 (462)
...+.-++|++-|-+..-+..+...++++.+.
T Consensus 217 ~~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~~~ 248 (284)
T PRK09195 217 DIQQTIKLGICKVNVATELKIAFSQALKNYLT 248 (284)
T ss_pred HHHHHHHcCCeEEEeCcHHHHHHHHHHHHHHH
Confidence 34445578999999999999999999988764
No 44
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=97.62 E-value=0.032 Score=56.83 Aligned_cols=214 Identities=17% Similarity=0.206 Sum_probs=137.9
Q ss_pred HHHHHHHhCCCceEecccCChHHHHH----HHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhc--CCc
Q 012478 79 KSLRQILELPGVHQGPACFDALSAKL----VEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV--SIP 152 (462)
Q Consensus 79 ~~LR~ll~~~~~iv~p~ayDalSArl----~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~--~iP 152 (462)
+-|....+.+-.+.+.|+|+.-+++. +|+.+.+.|+..+-+.. ..+| .++.+...++.+++.. ++|
T Consensus 8 ~~l~~A~~~~yav~AfN~~n~e~~~avi~aAe~~~sPvIlq~s~~~~-~~~~-------~~~~~~~~~~~~a~~~~~~vP 79 (293)
T PRK07315 8 KFVQAARDNGYAVGGFNTNNLEWTQAILRAAEAKKAPVLIQTSMGAA-KYMG-------GYKVCKNLIENLVESMGITVP 79 (293)
T ss_pred HHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHH-hhcC-------cHHHHHHHHHHHHHHcCCCCc
Confidence 34555555565688999999999854 56678998887653321 1112 1445667777777777 789
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecc
Q 012478 153 VIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTD 232 (462)
Q Consensus 153 VIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTD 232 (462)
|.+=.|+| + .+.+++.+++|+..|+|-.. | .|.+|-++.-+.+++-.+..| ..+-+-..
T Consensus 80 V~lHLDH~--~----~~~i~~ai~~GftSVm~d~S-------~------l~~eEni~~t~~v~~~a~~~g--v~vE~ElG 138 (293)
T PRK07315 80 VAIHLDHG--H----YEDALECIEVGYTSIMFDGS-------H------LPVEENLKLAKEVVEKAHAKG--ISVEAEVG 138 (293)
T ss_pred EEEECCCC--C----HHHHHHHHHcCCCEEEEcCC-------C------CCHHHHHHHHHHHHHHHHHcC--CEEEEecC
Confidence 99999998 5 33556777899999999544 2 356777777777776555322 22211111
Q ss_pred hh----------hc-ccHHHHHHHHHHhHhcCCcEEEec--CC----------CCHHHHHHHHHhCCCCceeeeeeecCC
Q 012478 233 SR----------QA-LSLEESLRRSRAFADAGADVLFID--AL----------ASKEEMKAFCEISPLVPKMANMLEGGG 289 (462)
Q Consensus 233 A~----------~~-~gldeAI~RakAy~eAGAD~Ifie--~~----------~s~eei~~i~~~v~~vP~~~N~l~~~g 289 (462)
.. .. .+.+ .|+.+.+.|+|+|-+- .+ -+.+.++++.+.++.+|+ ++.|+.
T Consensus 139 ~i~g~ed~~~g~s~~t~pe----ea~~f~~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~~iPl---VlhGGS 211 (293)
T PRK07315 139 TIGGEEDGIIGKGELAPIE----DAKAMVETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVPGFPI---VLHGGS 211 (293)
T ss_pred cccCcCccccCccCCCCHH----HHHHHHHcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhccCCCE---EEECCC
Confidence 11 01 2334 5666778999988653 11 246788899888744665 344432
Q ss_pred CCCCCCHHHHHhcCCCEEeccchHHHHHHHHHHHHHHHH
Q 012478 290 KTPILNPLELEELGFKLVAYPLSLIGVSVRAMQDALTAI 328 (462)
Q Consensus 290 ~tP~ls~~eL~~lGv~~V~yp~~ll~aa~~Am~~~l~~l 328 (462)
..|.-...++-+.|++-|-+...+..+...++++.+..+
T Consensus 212 Gi~~e~~~~~i~~Gi~KiNv~T~i~~~~~~~~~~~~~~~ 250 (293)
T PRK07315 212 GIPDDQIQEAIKLGVAKVNVNTECQIAFANATRKFARDY 250 (293)
T ss_pred CCCHHHHHHHHHcCCCEEEEccHHHHHHHHHHHHHHHhc
Confidence 233334556678899999999988887777777766544
No 45
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=97.61 E-value=0.028 Score=57.21 Aligned_cols=217 Identities=16% Similarity=0.197 Sum_probs=140.8
Q ss_pred HHHHHHHhCCCceEecccCChHHHHH----HHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEE
Q 012478 79 KSLRQILELPGVHQGPACFDALSAKL----VEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVI 154 (462)
Q Consensus 79 ~~LR~ll~~~~~iv~p~ayDalSArl----~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVI 154 (462)
+-|....+.+-.+.+.|+||.-+++. +|+.+.+.|+..+-+.. .. ..++.+...++.+++..++||.
T Consensus 8 ~iL~~A~~~~yaV~AfNv~n~e~~~avi~AAee~~sPvIlq~~~~~~-~~--------~g~~~~~~~~~~~A~~~~VPVa 78 (284)
T PRK12857 8 ELLKKAEKGGYAVGAFNCNNMEIVQAIVAAAEAEKSPVIIQASQGAI-KY--------AGIEYISAMVRTAAEKASVPVA 78 (284)
T ss_pred HHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHHhCCCEEEEechhHh-hh--------CCHHHHHHHHHHHHHHCCCCEE
Confidence 44555555565688999999999854 46678888886643321 11 2355667778888888899999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCC----CeEEEEe
Q 012478 155 GDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGS----DIVIVAR 230 (462)
Q Consensus 155 aD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~----d~vIiAR 230 (462)
+=.|+|. +. +.+++.+++|...|.| |.. | .|.||=+++-+.+++-++..|. ++=-++.
T Consensus 79 lHLDH~~-~~----e~i~~ai~~GftSVM~-DgS------~------lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg 140 (284)
T PRK12857 79 LHLDHGT-DF----EQVMKCIRNGFTSVMI-DGS------K------LPLEENIALTKKVVEIAHAVGVSVEAELGKIGG 140 (284)
T ss_pred EECCCCC-CH----HHHHHHHHcCCCeEEE-eCC------C------CCHHHHHHHHHHHHHHHHHcCCEEEEEeeecCC
Confidence 9999995 33 3456777789999999 542 3 3677777777777766653321 1111222
Q ss_pred cchh-hc---ccHHHHHHHHHHhH-hcCCcEEEe-----cCC------CCHHHHHHHHHhCCCCceeeeeeecCCCCCCC
Q 012478 231 TDSR-QA---LSLEESLRRSRAFA-DAGADVLFI-----DAL------ASKEEMKAFCEISPLVPKMANMLEGGGKTPIL 294 (462)
Q Consensus 231 TDA~-~~---~gldeAI~RakAy~-eAGAD~Ifi-----e~~------~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~l 294 (462)
.+.. .. ..+---.+.|+.|. +.|+|++-+ +|. -+.+.++++.+.++ +|+ ++.|+..+|.-
T Consensus 141 ~e~~~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~~~-vPL---VlHGgSG~~~e 216 (284)
T PRK12857 141 TEDDITVDEREAAMTDPEEARRFVEETGVDALAIAIGTAHGPYKGEPKLDFDRLAKIKELVN-IPI---VLHGSSGVPDE 216 (284)
T ss_pred ccCCCCcccchhhcCCHHHHHHHHHHHCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhC-CCE---EEeCCCCCCHH
Confidence 1111 00 00000134566775 569998864 232 24678888888775 665 56664334433
Q ss_pred CHHHHHhcCCCEEeccchHHHHHHHHHHHHHH
Q 012478 295 NPLELEELGFKLVAYPLSLIGVSVRAMQDALT 326 (462)
Q Consensus 295 s~~eL~~lGv~~V~yp~~ll~aa~~Am~~~l~ 326 (462)
...+.-++|++-|-+...+..+...++++.+.
T Consensus 217 ~~~~ai~~Gi~KiNi~T~~~~a~~~~~~~~~~ 248 (284)
T PRK12857 217 AIRKAISLGVRKVNIDTNIREAFVARLREVLE 248 (284)
T ss_pred HHHHHHHcCCeEEEeCcHHHHHHHHHHHHHHH
Confidence 34445578999999999999999999988864
No 46
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=97.60 E-value=0.0022 Score=64.68 Aligned_cols=123 Identities=20% Similarity=0.304 Sum_probs=85.7
Q ss_pred CHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHH
Q 012478 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (462)
Q Consensus 163 ~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeA 242 (462)
|.....+.++.+++.|++||.+ ||+++.-...+.+|-.+-++.++++.. ..+-|++-+-+ .+.+|+
T Consensus 19 D~~~l~~lv~~~~~~Gv~gi~v--------~GstGE~~~Ls~~Er~~l~~~~~~~~~---g~~pvi~gv~~---~~t~~a 84 (294)
T TIGR02313 19 DEEALRELIEFQIEGGSHAISV--------GGTSGEPGSLTLEERKQAIENAIDQIA---GRIPFAPGTGA---LNHDET 84 (294)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE--------CccCcccccCCHHHHHHHHHHHHHHhC---CCCcEEEECCc---chHHHH
Confidence 5678889999999999999998 556666678899999888888887653 35655655433 467999
Q ss_pred HHHHHHhHhcCCcEEEecCC----CCHHHHHH----HHHhCCCCcee-eeeeecCCCC-CCCCHHHHHhc
Q 012478 243 LRRSRAFADAGADVLFIDAL----ASKEEMKA----FCEISPLVPKM-ANMLEGGGKT-PILNPLELEEL 302 (462)
Q Consensus 243 I~RakAy~eAGAD~Ifie~~----~s~eei~~----i~~~v~~vP~~-~N~l~~~g~t-P~ls~~eL~~l 302 (462)
|+.++.++++|||++++-.+ ++.+++.+ +++..|.+|++ .|. ++.+ -.++++.+.+|
T Consensus 85 i~~a~~A~~~Gad~v~v~pP~y~~~~~~~l~~~f~~ia~a~~~lpv~iYn~---P~~tg~~l~~~~l~~L 151 (294)
T TIGR02313 85 LELTKFAEEAGADAAMVIVPYYNKPNQEALYDHFAEVADAVPDFPIIIYNI---PGRAAQEIAPKTMARL 151 (294)
T ss_pred HHHHHHHHHcCCCEEEEcCccCCCCCHHHHHHHHHHHHHhccCCCEEEEeC---chhcCcCCCHHHHHHH
Confidence 99999999999999988654 34455444 45555345653 332 2222 24566655544
No 47
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=97.58 E-value=0.011 Score=54.09 Aligned_cols=173 Identities=21% Similarity=0.175 Sum_probs=103.7
Q ss_pred HHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCC--CCCHHHHHHHHHHHHHhCccE
Q 012478 104 LVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNG--YGNAMNVKRTVKGYIKAGFAG 181 (462)
Q Consensus 104 l~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtG--yG~~~nv~rtVk~l~~AGaaG 181 (462)
.+.+.|++++.+.| +++..+........+||++=...+ +.......+.++.++++||++
T Consensus 21 ~~~~~gv~gi~~~g-------------------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~Gad~ 81 (201)
T cd00945 21 EAIEYGFAAVCVNP-------------------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDLGADE 81 (201)
T ss_pred HHHHhCCcEEEECH-------------------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHcCCCE
Confidence 44457999998887 555555444333258888654443 323678899999999999999
Q ss_pred EEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEecC
Q 012478 182 IILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDA 261 (462)
Q Consensus 182 I~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~ 261 (462)
|.+.--.+ +... + ..+++.+.++++.++. +.+..+++--+.... ...++..+.++...++|+|+|=...
T Consensus 82 i~v~~~~~---~~~~-~----~~~~~~~~~~~i~~~~-~~~~pv~iy~~p~~~--~~~~~~~~~~~~~~~~g~~~iK~~~ 150 (201)
T cd00945 82 IDVVINIG---SLKE-G----DWEEVLEEIAAVVEAA-DGGLPLKVILETRGL--KTADEIAKAARIAAEAGADFIKTST 150 (201)
T ss_pred EEEeccHH---HHhC-C----CHHHHHHHHHHHHHHh-cCCceEEEEEECCCC--CCHHHHHHHHHHHHHhCCCEEEeCC
Confidence 99954321 1000 0 2567777777777764 212344444432221 2456666677777899999997543
Q ss_pred C-----CCHHHHHHHHHhCC-CCceeeeeeecCCCCCCCCHHHHHhcCCCEEecc
Q 012478 262 L-----ASKEEMKAFCEISP-LVPKMANMLEGGGKTPILNPLELEELGFKLVAYP 310 (462)
Q Consensus 262 ~-----~s~eei~~i~~~v~-~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp 310 (462)
- .+.+.++++.+.++ ..|. +..+|....-...+...+|...++++
T Consensus 151 ~~~~~~~~~~~~~~i~~~~~~~~~v----~~~gg~~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 151 GFGGGGATVEDVKLMKEAVGGRVGV----KAAGGIKTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred CCCCCCCCHHHHHHHHHhcccCCcE----EEECCCCCHHHHHHHHHhccceeecC
Confidence 2 27788888888764 1232 22223210013466666787777653
No 48
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=97.52 E-value=0.04 Score=56.01 Aligned_cols=213 Identities=13% Similarity=0.127 Sum_probs=142.3
Q ss_pred HHHHHHHhCCCceEecccCChHHHHH----HHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEE
Q 012478 79 KSLRQILELPGVHQGPACFDALSAKL----VEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVI 154 (462)
Q Consensus 79 ~~LR~ll~~~~~iv~p~ayDalSArl----~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVI 154 (462)
+-|....+.+-.+.+.|+||.-+++. +|+.+.+.|+.-+-+. ..+ ..++.+...++.+++..++||.
T Consensus 6 ~ll~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~----~~~-----~~~~~~~~~~~~~a~~~~VPVa 76 (282)
T TIGR01858 6 YMLQDAQAGGYAVPAFNIHNLETIQAVVETAAEMRSPVILAGTPGT----FKH-----AGTEYIVALCSAASTTYNMPLA 76 (282)
T ss_pred HHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCccH----Hhh-----CCHHHHHHHHHHHHHHCCCCEE
Confidence 34555566666688899999999865 4667899888664332 122 3466677888888888899999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCC----CeEEEEe
Q 012478 155 GDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGS----DIVIVAR 230 (462)
Q Consensus 155 aD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~----d~vIiAR 230 (462)
+=.|.|. + .+.+++.+++|...|.+... | .|.||=++.-+.+++-++..|. ++=-++.
T Consensus 77 lHLDHg~-~----~e~i~~ai~~GFtSVM~DgS-------~------lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg 138 (282)
T TIGR01858 77 LHLDHHE-S----LDDIRQKVHAGVRSAMIDGS-------H------FPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGG 138 (282)
T ss_pred EECCCCC-C----HHHHHHHHHcCCCEEeecCC-------C------CCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCC
Confidence 9999995 3 35567778899999999443 2 3567777777777766654331 1111222
Q ss_pred cchh-h-------cccHHHHHHHHHHhH-hcCCcEEEe-----cCC------CCHHHHHHHHHhCCCCceeeeeeecCCC
Q 012478 231 TDSR-Q-------ALSLEESLRRSRAFA-DAGADVLFI-----DAL------ASKEEMKAFCEISPLVPKMANMLEGGGK 290 (462)
Q Consensus 231 TDA~-~-------~~gldeAI~RakAy~-eAGAD~Ifi-----e~~------~s~eei~~i~~~v~~vP~~~N~l~~~g~ 290 (462)
++.. . -.+.+ .|+.|. +.|+|++-+ +|. -+.+.+++|.+.++ +|+ ++.|+..
T Consensus 139 ~e~~~~~~~~~~~~T~pe----ea~~Fv~~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~~-iPL---VlHGgSG 210 (282)
T TIGR01858 139 VEDDLSVDEEDALYTDPQ----EAKEFVEATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVVD-VPL---VLHGASD 210 (282)
T ss_pred ccCCCccccchhccCCHH----HHHHHHHHHCcCEEecccCccccCcCCCCccCHHHHHHHHHHhC-CCe---EEecCCC
Confidence 1111 0 01223 455555 589998864 332 24678888888875 675 4565433
Q ss_pred CCCCCHHHHHhcCCCEEeccchHHHHHHHHHHHHHH
Q 012478 291 TPILNPLELEELGFKLVAYPLSLIGVSVRAMQDALT 326 (462)
Q Consensus 291 tP~ls~~eL~~lGv~~V~yp~~ll~aa~~Am~~~l~ 326 (462)
.|.-.....-++|++-|-+...+..+..+++++.+.
T Consensus 211 ~~~e~~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~~~ 246 (282)
T TIGR01858 211 VPDEDVRRTIELGICKVNVATELKIAFSGAVKAYFA 246 (282)
T ss_pred CCHHHHHHHHHcCCeEEEeCcHHHHHHHHHHHHHHH
Confidence 333233444578999999999999999999988864
No 49
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=97.52 E-value=0.032 Score=55.87 Aligned_cols=187 Identities=18% Similarity=0.206 Sum_probs=112.1
Q ss_pred HhC-CcEEEeccHHHHhhhccCCCC---------------CCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHH
Q 012478 107 KSG-FSFCFTSGFSISAARLALPDT---------------GFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRT 170 (462)
Q Consensus 107 ~aG-fdaI~vSG~avSas~lG~PD~---------------g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rt 170 (462)
+.| |.++.+.+...- ...|.|.- .....+++++..+...+..+.||++-.= | .+.....+.
T Consensus 31 ~~g~~g~v~~~ti~~~-~~~~~~~p~~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~~~~p~ivsi~-g-~~~~~~~~~ 107 (296)
T cd04740 31 DLGKLGAIVTKSITLE-PREGNPPPRVVETPGGMLNAIGLQNPGVEAFLEELLPWLREFGTPVIASIA-G-STVEEFVEV 107 (296)
T ss_pred hcCCceEEEECCcCCC-CCCCCCCCeEEecCcceeeecCCCCcCHHHHHHHHHHHhhcCCCcEEEEEe-c-CCHHHHHHH
Confidence 445 888877764432 22344321 1133567777776655556789998762 2 246778888
Q ss_pred HHHHHHhCccEEEeCCCCCCCCCCCCC--CCcc-cCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHH
Q 012478 171 VKGYIKAGFAGIILEDQVSPKGCGHTR--GRKV-VSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSR 247 (462)
Q Consensus 171 Vk~l~~AGaaGI~IEDq~~PKrCGH~~--gk~L-vp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~Rak 247 (462)
++.++++|+++|-|-=. |-|.. |..+ .+.+...+-+++++++. ++-|..|.- ...++..+-++
T Consensus 108 a~~~~~~G~d~iElN~~-----cP~~~~~g~~~~~~~~~~~eiv~~vr~~~-----~~Pv~vKl~----~~~~~~~~~a~ 173 (296)
T cd04740 108 AEKLADAGADAIELNIS-----CPNVKGGGMAFGTDPEAVAEIVKAVKKAT-----DVPVIVKLT----PNVTDIVEIAR 173 (296)
T ss_pred HHHHHHcCCCEEEEECC-----CCCCCCCcccccCCHHHHHHHHHHHHhcc-----CCCEEEEeC----CCchhHHHHHH
Confidence 99999999999988533 33322 2222 34455555555555442 344555532 12356777788
Q ss_pred HhHhcCCcEEEecC--------C---------------------CCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHH
Q 012478 248 AFADAGADVLFIDA--------L---------------------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLE 298 (462)
Q Consensus 248 Ay~eAGAD~Ifie~--------~---------------------~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~e 298 (462)
+..++|||.|.+.. . ...+.++++.+.++ +|+..| ||-+-.-+..+
T Consensus 174 ~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~-ipii~~----GGI~~~~da~~ 248 (296)
T cd04740 174 AAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVE-IPIIGV----GGIASGEDALE 248 (296)
T ss_pred HHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcC-CCEEEE----CCCCCHHHHHH
Confidence 89999999876521 0 01256666666654 565543 34322235566
Q ss_pred HHhcCCCEEeccchHHH
Q 012478 299 LEELGFKLVAYPLSLIG 315 (462)
Q Consensus 299 L~~lGv~~V~yp~~ll~ 315 (462)
+-++|.+.|..+..++.
T Consensus 249 ~l~~GAd~V~igra~l~ 265 (296)
T cd04740 249 FLMAGASAVQVGTANFV 265 (296)
T ss_pred HHHcCCCEEEEchhhhc
Confidence 66789999998877665
No 50
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=97.51 E-value=0.037 Score=56.29 Aligned_cols=213 Identities=15% Similarity=0.160 Sum_probs=140.3
Q ss_pred HHHHHHHhCCCceEecccCChHHHHH----HHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEE
Q 012478 79 KSLRQILELPGVHQGPACFDALSAKL----VEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVI 154 (462)
Q Consensus 79 ~~LR~ll~~~~~iv~p~ayDalSArl----~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVI 154 (462)
+-|....+.+-.+-+.|+||.-+++. +|+.+.+.|...+-... . ...++.+...++.+++..++||.
T Consensus 8 ~~l~~A~~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~----~-----~~g~~~~~~~~~~~a~~~~VPVa 78 (284)
T PRK12737 8 NMLKKAQAEGYAVPAFNIHNLETLQVVVETAAELRSPVILAGTPGTF----S-----YAGTDYIVAIAEVAARKYNIPLA 78 (284)
T ss_pred HHHHHHHHcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCccHH----h-----hCCHHHHHHHHHHHHHHCCCCEE
Confidence 34555555555688889999999865 46678998886543321 1 12345567778888888899999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCC----CeEEEEe
Q 012478 155 GDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGS----DIVIVAR 230 (462)
Q Consensus 155 aD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~----d~vIiAR 230 (462)
+=.|+|. + .+.+++.+++|...|.| |.. | .|.+|=+++-+.+++-++..|. ++=-++.
T Consensus 79 lHLDH~~-~----~e~i~~ai~~GftSVMi-DgS------~------lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg 140 (284)
T PRK12737 79 LHLDHHE-D----LDDIKKKVRAGIRSVMI-DGS------H------LSFEENIAIVKEVVEFCHRYDASVEAELGRLGG 140 (284)
T ss_pred EECCCCC-C----HHHHHHHHHcCCCeEEe-cCC------C------CCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccC
Confidence 9999995 3 34567778899999999 542 3 3678877777777777664331 1111222
Q ss_pred cchh----h----cccHHHHHHHHHHhH-hcCCcEEEe-----cCC------CCHHHHHHHHHhCCCCceeeeeeecCCC
Q 012478 231 TDSR----Q----ALSLEESLRRSRAFA-DAGADVLFI-----DAL------ASKEEMKAFCEISPLVPKMANMLEGGGK 290 (462)
Q Consensus 231 TDA~----~----~~gldeAI~RakAy~-eAGAD~Ifi-----e~~------~s~eei~~i~~~v~~vP~~~N~l~~~g~ 290 (462)
++.. . -.+. +.|+.|. +.|+|++-+ +|+ -+.+.+++|.+.++ +|+ ++.|+..
T Consensus 141 ~e~~~~~~~~~~~~T~p----eeA~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~-iPL---VlHGgSG 212 (284)
T PRK12737 141 QEDDLVVDEKDAMYTNP----DAAAEFVERTGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKVS-IPL---VLHGASG 212 (284)
T ss_pred ccCCcccccccccCCCH----HHHHHHHHHhCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhC-CCE---EEeCCCC
Confidence 2111 0 0122 3466666 489998864 333 15677888888775 665 5665433
Q ss_pred CCCCCHHHHHhcCCCEEeccchHHHHHHHHHHHHHH
Q 012478 291 TPILNPLELEELGFKLVAYPLSLIGVSVRAMQDALT 326 (462)
Q Consensus 291 tP~ls~~eL~~lGv~~V~yp~~ll~aa~~Am~~~l~ 326 (462)
+|.-...+.-++|++-|-+...+..+...++++.+.
T Consensus 213 ~~~e~~~kai~~Gi~KiNi~T~l~~a~~~~~~~~~~ 248 (284)
T PRK12737 213 VPDEDVKKAISLGICKVNVATELKIAFSDAVKKYFY 248 (284)
T ss_pred CCHHHHHHHHHCCCeEEEeCcHHHHHHHHHHHHHHH
Confidence 443334445578999999999999999999988864
No 51
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=97.50 E-value=0.0029 Score=63.80 Aligned_cols=124 Identities=19% Similarity=0.209 Sum_probs=84.0
Q ss_pred CHHHHHHHHHHHHHhC-ccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHH
Q 012478 163 NAMNVKRTVKGYIKAG-FAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEE 241 (462)
Q Consensus 163 ~~~nv~rtVk~l~~AG-aaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~glde 241 (462)
|.....+.++.+++.| +.||.+ ||+++.-...+.+|..+-++++++... ..+-|++-+- ..+.++
T Consensus 19 D~~~~~~~i~~~i~~G~v~gi~~--------~GstGE~~~Lt~eEr~~~~~~~~~~~~---~~~pvi~gv~---~~~t~~ 84 (290)
T TIGR00683 19 NEKGLRQIIRHNIDKMKVDGLYV--------GGSTGENFMLSTEEKKEIFRIAKDEAK---DQIALIAQVG---SVNLKE 84 (290)
T ss_pred CHHHHHHHHHHHHhCCCcCEEEE--------CCcccccccCCHHHHHHHHHHHHHHhC---CCCcEEEecC---CCCHHH
Confidence 5667888999999999 999988 556666667789998888888887653 3454444432 235789
Q ss_pred HHHHHHHhHhcCCcEEEecCC----CCHHHHHHHHH----hCCCCceeeeeeecCCCC-CCCCHHHHHhc
Q 012478 242 SLRRSRAFADAGADVLFIDAL----ASKEEMKAFCE----ISPLVPKMANMLEGGGKT-PILNPLELEEL 302 (462)
Q Consensus 242 AI~RakAy~eAGAD~Ifie~~----~s~eei~~i~~----~v~~vP~~~N~l~~~g~t-P~ls~~eL~~l 302 (462)
++++++.+.++|||+|++-.+ .+.+++..+.+ ..+.+|++ +-..|+.+ -.++.+.+.++
T Consensus 85 ~i~la~~a~~~Gad~v~v~~P~y~~~~~~~i~~yf~~v~~~~~~lpv~--lYn~P~~tg~~l~~~~i~~L 152 (290)
T TIGR00683 85 AVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETGGLNMI--VYSIPFLTGVNMGIEQFGEL 152 (290)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcCCCCCHHHHHHHHHHHHhhCCCCCEE--EEeCccccccCcCHHHHHHH
Confidence 999999999999999988443 35566655443 33335543 22222222 24676666665
No 52
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=97.50 E-value=0.0026 Score=65.95 Aligned_cols=157 Identities=19% Similarity=0.194 Sum_probs=111.8
Q ss_pred Cceeeccccc-CCCccccccCchHHHHHHHHhCCCceEecccCChHHHHHHHHhCCcEEEeccHHHHh-------hhccC
Q 012478 56 GTINRTRVYR-KNSTGVEACLSPAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISA-------ARLAL 127 (462)
Q Consensus 56 r~~~~~R~y~-rgs~~~~~a~~~a~~LR~ll~~~~~iv~p~ayDalSArl~e~aGfdaI~vSG~avSa-------s~lG~ 127 (462)
-||.++.||+ +|-- ...-+.|++..++-+..++-.++|.-++.++.+. .|.+.+++.-+.+ +.+|.
T Consensus 128 ~fKpRTsp~sf~G~g-----~~gL~~L~~~~~~~Gl~v~tev~d~~~~~~l~~~-vd~lqIgAr~~~N~~LL~~va~~~k 201 (335)
T PRK08673 128 AFKPRTSPYSFQGLG-----EEGLKLLAEAREETGLPIVTEVMDPRDVELVAEY-VDILQIGARNMQNFDLLKEVGKTNK 201 (335)
T ss_pred EecCCCCCccccccc-----HHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHh-CCeEEECcccccCHHHHHHHHcCCC
Confidence 3566667775 3321 2334566666667778888899999999999988 9999999765543 23466
Q ss_pred CC---CCC-CCHHHHHHHHHHHHh----------------------------------hcCCcEEEeCCCCCCCHHHHHH
Q 012478 128 PD---TGF-ISYGEMVDQGQLITQ----------------------------------AVSIPVIGDGDNGYGNAMNVKR 169 (462)
Q Consensus 128 PD---~g~-vsl~Eml~~~~~I~r----------------------------------a~~iPVIaD~DtGyG~~~nv~r 169 (462)
|= .+. .+++|++..++.|.. .+.+|||+|.+++-|...-+..
T Consensus 202 PViLk~G~~~ti~E~l~A~e~i~~~GN~~viL~erG~~tf~~~~~~~ldl~ai~~lk~~~~lPVi~d~sH~~G~~~~v~~ 281 (335)
T PRK08673 202 PVLLKRGMSATIEEWLMAAEYILAEGNPNVILCERGIRTFETATRNTLDLSAVPVIKKLTHLPVIVDPSHATGKRDLVEP 281 (335)
T ss_pred cEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCcChhhhhHHHHHHHHHhcCCCEEEeCCCCCccccchHH
Confidence 53 243 488999888777742 1468999999999887666666
Q ss_pred HHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHH
Q 012478 170 TVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARK 219 (462)
Q Consensus 170 tVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~ 219 (462)
..+..+.+||+|+.||=-..|.+-- .+++.-++++++..-++.++....
T Consensus 282 ~a~AAvA~GAdGliIE~H~~pd~al-sD~~~sl~p~e~~~lv~~i~~i~~ 330 (335)
T PRK08673 282 LALAAVAAGADGLIVEVHPDPEKAL-SDGPQSLTPEEFEELMKKLRAIAE 330 (335)
T ss_pred HHHHHHHhCCCEEEEEecCCcccCC-CcchhcCCHHHHHHHHHHHHHHHH
Confidence 6777888999999999877665543 566677777777666665555444
No 53
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.50 E-value=0.0057 Score=59.22 Aligned_cols=179 Identities=20% Similarity=0.224 Sum_probs=103.3
Q ss_pred ChH-HHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHH
Q 012478 98 DAL-SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIK 176 (462)
Q Consensus 98 Dal-SArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~ 176 (462)
|++ .|+.+.+.|++.+++--...+ ..++. +....++.|++.+++|++++ .|.-+. +.++.+.+
T Consensus 33 ~~~e~a~~~~~~G~~~l~i~dl~~~--~~~~~--------~~~~~i~~i~~~~~~~l~v~--GGi~~~----~~~~~~~~ 96 (241)
T PRK13585 33 DPVEVAKRWVDAGAETLHLVDLDGA--FEGER--------KNAEAIEKIIEAVGVPVQLG--GGIRSA----EDAASLLD 96 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEEechhh--hcCCc--------ccHHHHHHHHHHcCCcEEEc--CCcCCH----HHHHHHHH
Confidence 443 346667789999887743321 12332 23456677888889999994 333343 33456667
Q ss_pred hCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEec---chhhcccH-----HHHHHHHHH
Q 012478 177 AGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVART---DSRQALSL-----EESLRRSRA 248 (462)
Q Consensus 177 AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiART---DA~~~~gl-----deAI~RakA 248 (462)
+||++|+|--... -.+ +.+.++ ++. .+.+-++++-. .-....+. .+.++.++.
T Consensus 97 ~Ga~~v~iGs~~~------------~~~-~~~~~i---~~~---~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~ 157 (241)
T PRK13585 97 LGVDRVILGTAAV------------ENP-EIVREL---SEE---FGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKR 157 (241)
T ss_pred cCCCEEEEChHHh------------hCh-HHHHHH---HHH---hCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHH
Confidence 9999999933211 111 222232 222 22222222110 00000111 145677888
Q ss_pred hHhcCCcEEEecCCC--------CHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcCCCEEeccchHHHH
Q 012478 249 FADAGADVLFIDALA--------SKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGV 316 (462)
Q Consensus 249 y~eAGAD~Ifie~~~--------s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~ll~a 316 (462)
+.++|++.|++..+. +.+.++++++.++ +|+.++ ||-...-...++.++|+..|+.+..++..
T Consensus 158 ~~~~G~~~i~~~~~~~~g~~~g~~~~~i~~i~~~~~-iPvia~----GGI~~~~di~~~~~~Ga~gv~vgsa~~~~ 228 (241)
T PRK13585 158 FEELGAGSILFTNVDVEGLLEGVNTEPVKELVDSVD-IPVIAS----GGVTTLDDLRALKEAGAAGVVVGSALYKG 228 (241)
T ss_pred HHHcCCCEEEEEeecCCCCcCCCCHHHHHHHHHhCC-CCEEEe----CCCCCHHHHHHHHHcCCCEEEEEHHHhcC
Confidence 899999999986552 3467889988875 565533 34331124566789999999998876553
No 54
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=97.50 E-value=0.036 Score=56.51 Aligned_cols=218 Identities=17% Similarity=0.182 Sum_probs=140.4
Q ss_pred HHHHHHHhCCCceEecccCChHHHHH----HHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhc--CCc
Q 012478 79 KSLRQILELPGVHQGPACFDALSAKL----VEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV--SIP 152 (462)
Q Consensus 79 ~~LR~ll~~~~~iv~p~ayDalSArl----~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~--~iP 152 (462)
+-|....+.+--+.+.+|||.-+++. +|+.+.+.|+..+-+.. .+ +..++.+...++..+... ++|
T Consensus 8 ~iL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~~~~~~----~~----~~g~~~~~~~~~~~a~~~~~~VP 79 (288)
T TIGR00167 8 ELLQDAKEEGYAIPAFNINNLETINAVLEAAAEEKSPVIIQFSNGAA----KY----IAGLGAISAMVKAMSEAYPYGVP 79 (288)
T ss_pred HHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEECCcchh----hc----cCCHHHHHHHHHHHHHhccCCCc
Confidence 34555555565688999999999854 56679998886643321 11 023777888888888888 899
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCC----CeEEE
Q 012478 153 VIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGS----DIVIV 228 (462)
Q Consensus 153 VIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~----d~vIi 228 (462)
|.+=.|+|. + .+.+++.+++|...|.| |.. | .|.+|=+++-+.+++-++..|. ++=.+
T Consensus 80 V~lHLDHg~-~----~e~i~~ai~~GftSVMi-DgS------~------lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~v 141 (288)
T TIGR00167 80 VALHLDHGA-S----EEDCAQAVKAGFSSVMI-DGS------H------EPFEENIELTKKVVERAHKMGVSVEAELGTL 141 (288)
T ss_pred EEEECCCCC-C----HHHHHHHHHcCCCEEEe-cCC------C------CCHHHHHHHHHHHHHHHHHcCCEEEEEEeec
Confidence 999999996 3 34456667899999999 542 3 3677777776666666654321 12122
Q ss_pred Eecchh-h-c--ccHHHHHHHHHHhHh-cCCcEEEec-----C-----CC--CHHHHHHHHHhCCCCceeeeeeecCCCC
Q 012478 229 ARTDSR-Q-A--LSLEESLRRSRAFAD-AGADVLFID-----A-----LA--SKEEMKAFCEISPLVPKMANMLEGGGKT 291 (462)
Q Consensus 229 ARTDA~-~-~--~gldeAI~RakAy~e-AGAD~Ifie-----~-----~~--s~eei~~i~~~v~~vP~~~N~l~~~g~t 291 (462)
+..+.. . . ..+---.+.|+.|.+ .|+|++-+- + +. +.+.+++|.+.++ +|+ ++.|+..+
T Consensus 142 gg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~~v~-vPL---VlHGgSG~ 217 (288)
T TIGR00167 142 GGEEDGVSVADESALYTDPEEAKEFVKLTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKYVN-LPL---VLHGGSGI 217 (288)
T ss_pred cCccCCcccccccccCCCHHHHHHHHhccCCcEEeeccCccccccCCCCCccCHHHHHHHHHHhC-CCE---EEeCCCCC
Confidence 222111 0 0 000001246777875 699988652 2 22 5678888888875 675 35553333
Q ss_pred CCCCHHHHHhcCCCEEeccchHHHHHHHHHHHHHH
Q 012478 292 PILNPLELEELGFKLVAYPLSLIGVSVRAMQDALT 326 (462)
Q Consensus 292 P~ls~~eL~~lGv~~V~yp~~ll~aa~~Am~~~l~ 326 (462)
|.-...++-+.|++-|-+...+..+.+.++++.+.
T Consensus 218 ~~e~~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~~~ 252 (288)
T TIGR00167 218 PDEEIKKAISLGVVKVNIDTELQIAFAAAVRNYYA 252 (288)
T ss_pred CHHHHHHHHHcCCeEEEcChHHHHHHHHHHHHHHH
Confidence 32223444578999999999999999999988864
No 55
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=97.48 E-value=0.0023 Score=64.35 Aligned_cols=123 Identities=20% Similarity=0.236 Sum_probs=85.7
Q ss_pred CHHHHHHHHHHHHH-hCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHH
Q 012478 163 NAMNVKRTVKGYIK-AGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEE 241 (462)
Q Consensus 163 ~~~nv~rtVk~l~~-AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~glde 241 (462)
+.....+.++.+++ .|+.||.+ ||+++.-..++.+|..+-++.++++.. ..+-|++=+-+ .+.++
T Consensus 22 D~~~~~~li~~l~~~~Gv~gi~v--------~GstGE~~~Ls~eEr~~~~~~~~~~~~---~~~~viagvg~---~~t~~ 87 (293)
T PRK04147 22 DEQGLRRLVRFNIEKQGIDGLYV--------GGSTGEAFLLSTEEKKQVLEIVAEEAK---GKVKLIAQVGS---VNTAE 87 (293)
T ss_pred CHHHHHHHHHHHHhcCCCCEEEE--------CCCccccccCCHHHHHHHHHHHHHHhC---CCCCEEecCCC---CCHHH
Confidence 56778899999999 99999998 667776677888998888888887753 35666665432 46799
Q ss_pred HHHHHHHhHhcCCcEEEecCC----CCHHHHHH----HHHhCCCCcee-eeeeecCCCCCCCCHHHHHhc
Q 012478 242 SLRRSRAFADAGADVLFIDAL----ASKEEMKA----FCEISPLVPKM-ANMLEGGGKTPILNPLELEEL 302 (462)
Q Consensus 242 AI~RakAy~eAGAD~Ifie~~----~s~eei~~----i~~~v~~vP~~-~N~l~~~g~tP~ls~~eL~~l 302 (462)
+|+.++.+.++|||++++-.+ .+.+++.+ +++.++ .|++ .|. +... .-.++++.+.+|
T Consensus 88 ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~l~~~f~~va~a~~-lPv~iYn~-P~~t-g~~l~~~~l~~L 154 (293)
T PRK04147 88 AQELAKYATELGYDAISAVTPFYYPFSFEEICDYYREIIDSAD-NPMIVYNI-PALT-GVNLSLDQFNEL 154 (293)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcCCCCCHHHHHHHHHHHHHhCC-CCEEEEeC-chhh-ccCCCHHHHHHH
Confidence 999999999999999987543 34455444 445544 4643 342 2101 124677666666
No 56
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=97.46 E-value=0.0075 Score=57.84 Aligned_cols=177 Identities=21% Similarity=0.291 Sum_probs=104.4
Q ss_pred ChH-HHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHH
Q 012478 98 DAL-SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIK 176 (462)
Q Consensus 98 Dal-SArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~ 176 (462)
|+. -|+.+++.|++.+++....- ..-|.+ ...+.+++|++.+++||+++.. ..+. +.++++.+
T Consensus 30 dp~~~a~~~~~~g~d~l~v~dl~~--~~~~~~--------~~~~~i~~i~~~~~~pv~~~Gg--I~~~----e~~~~~~~ 93 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDG--AKGGEP--------VNLELIEEIVKAVGIPVQVGGG--IRSL----EDIERLLD 93 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCc--cccCCC--------CCHHHHHHHHHhcCCCEEEeCC--cCCH----HHHHHHHH
Confidence 443 45777789999999985431 111222 2255667788888999999732 3343 33456667
Q ss_pred hCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchh---------hcccHHHHHHHHH
Q 012478 177 AGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSR---------QALSLEESLRRSR 247 (462)
Q Consensus 177 AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~---------~~~gldeAI~Rak 247 (462)
+||+.|.|-... +-++ +++.++.. ..+.+-++.+ .|.. ....-.+.++.++
T Consensus 94 ~Gad~vvigs~~------------l~dp-~~~~~i~~------~~g~~~i~~s-id~~~~~~~~~~~~~~~~~~~~~~~~ 153 (234)
T cd04732 94 LGVSRVIIGTAA------------VKNP-ELVKELLK------EYGGERIVVG-LDAKDGKVATKGWLETSEVSLEELAK 153 (234)
T ss_pred cCCCEEEECchH------------HhCh-HHHHHHHH------HcCCceEEEE-EEeeCCEEEECCCeeecCCCHHHHHH
Confidence 999999885442 1122 23333222 1222222221 1110 0001124577899
Q ss_pred HhHhcCCcEEEecCCC--------CHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 012478 248 AFADAGADVLFIDALA--------SKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (462)
Q Consensus 248 Ay~eAGAD~Ifie~~~--------s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~ll~ 315 (462)
.+.++||+.+.+..+. +.+.++++++.++ +|+.+| ||-...=...++.+.|+.-|+.+..++.
T Consensus 154 ~~~~~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~~~-ipvi~~----GGi~~~~di~~~~~~Ga~gv~vg~~~~~ 224 (234)
T cd04732 154 RFEELGVKAIIYTDISRDGTLSGPNFELYKELAAATG-IPVIAS----GGVSSLDDIKALKELGVAGVIVGKALYE 224 (234)
T ss_pred HHHHcCCCEEEEEeecCCCccCCCCHHHHHHHHHhcC-CCEEEe----cCCCCHHHHHHHHHCCCCEEEEeHHHHc
Confidence 9999999999887652 4578888888765 676543 3422111356777889999999876654
No 57
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=97.45 E-value=0.0034 Score=60.25 Aligned_cols=183 Identities=22% Similarity=0.293 Sum_probs=103.8
Q ss_pred CChHH-HHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHH
Q 012478 97 FDALS-AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYI 175 (462)
Q Consensus 97 yDalS-Arl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~ 175 (462)
.|+.. |+..++.|++.+++.... .+..|.+ ..++.++.|++.+++||+++ .|..+..++ +++.
T Consensus 30 ~~~~~~a~~~~~~g~~~i~v~dld--~~~~g~~--------~~~~~i~~i~~~~~~pv~~~--GGI~~~ed~----~~~~ 93 (233)
T PRK00748 30 DDPVAQAKAWEDQGAKWLHLVDLD--GAKAGKP--------VNLELIEAIVKAVDIPVQVG--GGIRSLETV----EALL 93 (233)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCC--ccccCCc--------ccHHHHHHHHHHCCCCEEEc--CCcCCHHHH----HHHH
Confidence 35554 677888999999998642 1112332 22566777888889999994 444554444 4666
Q ss_pred HhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCe---EEEEecchhhcccHHHHHHHHHHhHhc
Q 012478 176 KAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDI---VIVARTDSRQALSLEESLRRSRAFADA 252 (462)
Q Consensus 176 ~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~---vIiARTDA~~~~gldeAI~RakAy~eA 252 (462)
++||.+|.+--.. .+..+.+.++......+.....|+ .+ .+.......-...++.++.+.++
T Consensus 94 ~~Ga~~vilg~~~-------------l~~~~~l~ei~~~~~~~i~vsid~k~~~v--~~~g~~~~~~~~~~e~~~~~~~~ 158 (233)
T PRK00748 94 DAGVSRVIIGTAA-------------VKNPELVKEACKKFPGKIVVGLDARDGKV--ATDGWLETSGVTAEDLAKRFEDA 158 (233)
T ss_pred HcCCCEEEECchH-------------HhCHHHHHHHHHHhCCCceeeeeccCCEE--EEccCeecCCCCHHHHHHHHHhc
Confidence 6899999772221 111122333222110000000111 01 01111000112346678889999
Q ss_pred CCcEEEecCC--------CCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcC-CCEEeccchHHH
Q 012478 253 GADVLFIDAL--------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELG-FKLVAYPLSLIG 315 (462)
Q Consensus 253 GAD~Ifie~~--------~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lG-v~~V~yp~~ll~ 315 (462)
||+.|++... .+.+.++++++.++ +|+.+| ||-...-+.+++.+.| +.-|+.+..++.
T Consensus 159 g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~~~-ipvia~----GGi~~~~di~~~~~~g~~~gv~vg~a~~~ 225 (233)
T PRK00748 159 GVKAIIYTDISRDGTLSGPNVEATRELAAAVP-IPVIAS----GGVSSLDDIKALKGLGAVEGVIVGRALYE 225 (233)
T ss_pred CCCEEEEeeecCcCCcCCCCHHHHHHHHHhCC-CCEEEe----CCCCCHHHHHHHHHcCCccEEEEEHHHHc
Confidence 9998888755 34688899998776 676543 3432222456678888 999998876543
No 58
>PLN02417 dihydrodipicolinate synthase
Probab=97.45 E-value=0.0029 Score=63.45 Aligned_cols=126 Identities=21% Similarity=0.224 Sum_probs=85.4
Q ss_pred CCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccH
Q 012478 160 GYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSL 239 (462)
Q Consensus 160 GyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gl 239 (462)
|-=|.....+.++.+++.|+.||.+ ||+++.-...+.+|..+-++.+++... ..+-|++=+-+ .+.
T Consensus 17 g~iD~~~~~~~i~~l~~~Gv~Gi~~--------~GstGE~~~ls~~Er~~~~~~~~~~~~---~~~pvi~gv~~---~~t 82 (280)
T PLN02417 17 GRFDLEAYDSLVNMQIENGAEGLIV--------GGTTGEGQLMSWDEHIMLIGHTVNCFG---GKIKVIGNTGS---NST 82 (280)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEE--------CccCcchhhCCHHHHHHHHHHHHHHhC---CCCcEEEECCC---ccH
Confidence 3335677889999999999999998 566666677888998888887777643 35666655433 357
Q ss_pred HHHHHHHHHhHhcCCcEEEecCC----CCHHHHHHHHHhCCC-Cce-eeeeeecCCCC-CCCCHHHHHhc
Q 012478 240 EESLRRSRAFADAGADVLFIDAL----ASKEEMKAFCEISPL-VPK-MANMLEGGGKT-PILNPLELEEL 302 (462)
Q Consensus 240 deAI~RakAy~eAGAD~Ifie~~----~s~eei~~i~~~v~~-vP~-~~N~l~~~g~t-P~ls~~eL~~l 302 (462)
+++++.++.+.++|||++++..+ ++.+++.++-+.+.. .|+ +.|. |..+ -.++++.+.++
T Consensus 83 ~~~i~~a~~a~~~Gadav~~~~P~y~~~~~~~i~~~f~~va~~~pi~lYn~---P~~tg~~l~~~~l~~l 149 (280)
T PLN02417 83 REAIHATEQGFAVGMHAALHINPYYGKTSQEGLIKHFETVLDMGPTIIYNV---PGRTGQDIPPEVIFKI 149 (280)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCccCCCCHHHHHHHHHHHHhhCCEEEEEC---hhHhCcCCCHHHHHHH
Confidence 89999999999999999988644 355666554433211 154 3443 2111 24666666655
No 59
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=97.45 E-value=0.044 Score=55.86 Aligned_cols=214 Identities=17% Similarity=0.170 Sum_probs=137.9
Q ss_pred HHHHHHHhCCCceEecccCChHHHHH----HHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcC--Cc
Q 012478 79 KSLRQILELPGVHQGPACFDALSAKL----VEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVS--IP 152 (462)
Q Consensus 79 ~~LR~ll~~~~~iv~p~ayDalSArl----~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~--iP 152 (462)
+-|....+++-.+.+.|+||.-+++. +|+.+.+.|+..+-+.. .+.. ++..+...++.+++..+ +|
T Consensus 8 ~lL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~----~~~~----~~~~~~~~~~~~A~~~~~~vP 79 (286)
T PRK08610 8 EMLIDAKENGYAVGQYNLNNLEFTQAILEASQEENAPVILGVSEGAA----RYMS----GFYTVVKMVEGLMHDLNITIP 79 (286)
T ss_pred HHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHH----hhcC----cHHHHHHHHHHHHHHcCCCCC
Confidence 34555555565688999999999854 46679998886653321 1210 24446677777777665 89
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCC----CeEEE
Q 012478 153 VIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGS----DIVIV 228 (462)
Q Consensus 153 VIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~----d~vIi 228 (462)
|.+=.|.|. + .+.+++.+++|...|.|... | .|.||=+++-+.+++-++..|. ++=.+
T Consensus 80 V~lHLDHg~-~----~e~i~~ai~~GftSVM~DgS-------~------l~~eeNi~~T~~vve~Ah~~gv~VEaElG~v 141 (286)
T PRK08610 80 VAIHLDHGS-S----FEKCKEAIDAGFTSVMIDAS-------H------SPFEENVATTKKVVEYAHEKGVSVEAELGTV 141 (286)
T ss_pred EEEECCCCC-C----HHHHHHHHHcCCCEEEEeCC-------C------CCHHHHHHHHHHHHHHHHHcCCEEEEEEecc
Confidence 999999996 4 34445677899999999433 3 3567777776666666653321 11112
Q ss_pred Eecchh--h----cccHHHHHHHHHHhH-hcCCcEEEe-----cCCC------CHHHHHHHHHhCCCCceeeeeeecCCC
Q 012478 229 ARTDSR--Q----ALSLEESLRRSRAFA-DAGADVLFI-----DALA------SKEEMKAFCEISPLVPKMANMLEGGGK 290 (462)
Q Consensus 229 ARTDA~--~----~~gldeAI~RakAy~-eAGAD~Ifi-----e~~~------s~eei~~i~~~v~~vP~~~N~l~~~g~ 290 (462)
+..+.. . -.+. +.|+.|. +-|+|++-+ +|.. +.+.++++.+.++ +|+ ++.|+..
T Consensus 142 gg~ed~~~~~~~~yT~p----eea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~~-vPL---VLHGgSG 213 (286)
T PRK08610 142 GGQEDDVVADGIIYADP----KECQELVEKTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLSTG-LPL---VLHGGTG 213 (286)
T ss_pred CCccCCCCCcccccCCH----HHHHHHHHHHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHHC-CCE---EEeCCCC
Confidence 221111 0 0133 3466666 469998764 2321 5678888888774 675 5665433
Q ss_pred CCCCCHHHHHhcCCCEEeccchHHHHHHHHHHHHHH
Q 012478 291 TPILNPLELEELGFKLVAYPLSLIGVSVRAMQDALT 326 (462)
Q Consensus 291 tP~ls~~eL~~lGv~~V~yp~~ll~aa~~Am~~~l~ 326 (462)
+|.-...++-+.|++-|-+...+..+...++++.+.
T Consensus 214 ~~~e~~~~ai~~GI~KiNi~T~l~~a~~~~~~~~~~ 249 (286)
T PRK08610 214 IPTKDIQKAIPFGTAKINVNTENQIASAKAVRDVLN 249 (286)
T ss_pred CCHHHHHHHHHCCCeEEEeccHHHHHHHHHHHHHHH
Confidence 443334455578999999999999999999998864
No 60
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=97.42 E-value=0.0042 Score=62.47 Aligned_cols=119 Identities=18% Similarity=0.219 Sum_probs=83.6
Q ss_pred CHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHH
Q 012478 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (462)
Q Consensus 163 ~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeA 242 (462)
|.....+.++.+++.|++||.+ ||+++.-...+.+|..+-++.++++.. .++-|++-+- . +.+++
T Consensus 19 D~~~l~~l~~~l~~~Gv~gi~v--------~GstGE~~~Ls~eEr~~l~~~~~~~~~---~~~pvi~gv~---~-~t~~~ 83 (289)
T cd00951 19 DEDAYRAHVEWLLSYGAAALFA--------AGGTGEFFSLTPDEYAQVVRAAVEETA---GRVPVLAGAG---Y-GTATA 83 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE--------CcCCcCcccCCHHHHHHHHHHHHHHhC---CCCCEEEecC---C-CHHHH
Confidence 5677889999999999999998 566666678899998888888887753 3455555442 2 56899
Q ss_pred HHHHHHhHhcCCcEEEecCC----CCHHHHHHHH----HhCCCCce-eeeeeecCCCCCCCCHHHHHhc
Q 012478 243 LRRSRAFADAGADVLFIDAL----ASKEEMKAFC----EISPLVPK-MANMLEGGGKTPILNPLELEEL 302 (462)
Q Consensus 243 I~RakAy~eAGAD~Ifie~~----~s~eei~~i~----~~v~~vP~-~~N~l~~~g~tP~ls~~eL~~l 302 (462)
++.++.++++|||++++-.+ .+.+++.+.. +..+ +|+ +.| ..+. .++++.+.+|
T Consensus 84 i~~a~~a~~~Gad~v~~~pP~y~~~~~~~i~~~f~~v~~~~~-~pi~lYn---~~g~--~l~~~~l~~L 146 (289)
T cd00951 84 IAYAQAAEKAGADGILLLPPYLTEAPQEGLYAHVEAVCKSTD-LGVIVYN---RANA--VLTADSLARL 146 (289)
T ss_pred HHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCC-CCEEEEe---CCCC--CCCHHHHHHH
Confidence 99999999999999987533 3556655544 4333 564 344 1221 3677666665
No 61
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=97.42 E-value=0.0035 Score=57.32 Aligned_cols=130 Identities=17% Similarity=0.106 Sum_probs=83.9
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCC-CeEEEEec
Q 012478 153 VIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGS-DIVIVART 231 (462)
Q Consensus 153 VIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~-d~vIiART 231 (462)
++++.|+|+.+..+..+.++.+++.|+.||.+-. ++++. +++.. +. ...|++.+
T Consensus 1 ~~~~~~~~~~d~~~~~~~~~~~~~~gv~gi~~~g-------------------~~i~~---~~~~~---~~~~~~v~~~v 55 (201)
T cd00945 1 IDLTLLHPDATLEDIAKLCDEAIEYGFAAVCVNP-------------------GYVRL---AADAL---AGSDVPVIVVV 55 (201)
T ss_pred CcccccCCCCCHHHHHHHHHHHHHhCCcEEEECH-------------------HHHHH---HHHHh---CCCCCeEEEEe
Confidence 3577899999999999999999999999998843 22333 33322 22 46667776
Q ss_pred chhh-cccHHHHHHHHHHhHhcCCcEEEecCC----CC------HHHHHHHHHhC-CCCceeeeeeecCCCCCCCCHHH-
Q 012478 232 DSRQ-ALSLEESLRRSRAFADAGADVLFIDAL----AS------KEEMKAFCEIS-PLVPKMANMLEGGGKTPILNPLE- 298 (462)
Q Consensus 232 DA~~-~~gldeAI~RakAy~eAGAD~Ifie~~----~s------~eei~~i~~~v-~~vP~~~N~l~~~g~tP~ls~~e- 298 (462)
.+.. ....+++++.++.+.++|||++.+... .+ .+.++++++.. ..+|+++-... +.+ ++.++
T Consensus 56 ~~~~~~~~~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p--~~~--~~~~~~ 131 (201)
T cd00945 56 GFPTGLTTTEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILET--RGL--KTADEI 131 (201)
T ss_pred cCCCCCCcHHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEEC--CCC--CCHHHH
Confidence 6532 123789999999999999999988543 23 34555666664 23566544332 222 23333
Q ss_pred ------HHhcCCCEEeccc
Q 012478 299 ------LEELGFKLVAYPL 311 (462)
Q Consensus 299 ------L~~lGv~~V~yp~ 311 (462)
+++.|+..+-...
T Consensus 132 ~~~~~~~~~~g~~~iK~~~ 150 (201)
T cd00945 132 AKAARIAAEAGADFIKTST 150 (201)
T ss_pred HHHHHHHHHhCCCEEEeCC
Confidence 2456777775543
No 62
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=97.42 E-value=0.0063 Score=61.89 Aligned_cols=198 Identities=16% Similarity=0.134 Sum_probs=116.9
Q ss_pred ecccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHh--hcCCcEEEeCCCCCC-CHHHHHH
Q 012478 93 GPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQ--AVSIPVIGDGDNGYG-NAMNVKR 169 (462)
Q Consensus 93 ~p~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~r--a~~iPVIaD~DtGyG-~~~nv~r 169 (462)
|.++-|...-+++.+.|.+.+|+-- - ++..+-+.. .. ...... ..+.|+++-+ +| ++....+
T Consensus 15 m~~~t~~~fR~l~~~~g~~~~~tem-i-~~~~l~~~~------~~----~~~~~~~~~~~~p~i~ql---~g~~~~~~~~ 79 (319)
T TIGR00737 15 MAGVTDSPFRRLVAEYGAGLTVCEM-V-SSEAIVYDS------QR----TMRLLDIAEDETPISVQL---FGSDPDTMAE 79 (319)
T ss_pred CCCCCcHHHHHHHHHHCCCEEEECC-E-EEhhhhcCC------HH----HHHHhhcCCccceEEEEE---eCCCHHHHHH
Confidence 4489999999999999988777531 1 111111111 01 111111 2258888775 34 5788999
Q ss_pred HHHHHHHhCccEEEeCCCC-CCCCCCCCCCCccc-CHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHH
Q 012478 170 TVKGYIKAGFAGIILEDQV-SPKGCGHTRGRKVV-SREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSR 247 (462)
Q Consensus 170 tVk~l~~AGaaGI~IEDq~-~PKrCGH~~gk~Lv-p~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~Rak 247 (462)
+++.+.++|++||.|--.. .+|++.+-+|..+. .++.+.+-+++++++. ++-|..+.-.-......+.++-++
T Consensus 80 aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~-----~~pv~vKir~g~~~~~~~~~~~a~ 154 (319)
T TIGR00737 80 AAKINEELGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAV-----DIPVTVKIRIGWDDAHINAVEAAR 154 (319)
T ss_pred HHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhc-----CCCEEEEEEcccCCCcchHHHHHH
Confidence 9999999999999996553 23444444454444 3444444444444332 344444432111111234677788
Q ss_pred HhHhcCCcEEEecCC---------CCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHH-hcCCCEEeccchHHH
Q 012478 248 AFADAGADVLFIDAL---------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELE-ELGFKLVAYPLSLIG 315 (462)
Q Consensus 248 Ay~eAGAD~Ifie~~---------~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~-~lGv~~V~yp~~ll~ 315 (462)
.+.++|+|.|.+++. ...+.++++.+.++ +|+..| ||-.-.-+.+++. ..|+..|.++-.++.
T Consensus 155 ~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~-ipvi~n----GgI~~~~da~~~l~~~gad~VmigR~~l~ 227 (319)
T TIGR00737 155 IAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVR-IPVIGN----GDIFSPEDAKAMLETTGCDGVMIGRGALG 227 (319)
T ss_pred HHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcCC-CcEEEe----CCCCCHHHHHHHHHhhCCCEEEEChhhhh
Confidence 899999999998753 23566777777776 677655 3322112344444 678999999877664
No 63
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=97.39 E-value=0.0056 Score=60.59 Aligned_cols=123 Identities=26% Similarity=0.359 Sum_probs=84.1
Q ss_pred CHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHH
Q 012478 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (462)
Q Consensus 163 ~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeA 242 (462)
|.....+.++.+++.|+.||.+ ||+++.-...+.+|..+-++.++++.. .++-|++-+-+ ...+|+
T Consensus 16 D~~~~~~~i~~l~~~Gv~gi~~--------~GstGE~~~ls~~Er~~l~~~~~~~~~---~~~~vi~gv~~---~~~~~~ 81 (281)
T cd00408 16 DLDALRRLVEFLIEAGVDGLVV--------LGTTGEAPTLTDEERKEVIEAVVEAVA---GRVPVIAGVGA---NSTREA 81 (281)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE--------CCCCcccccCCHHHHHHHHHHHHHHhC---CCCeEEEecCC---ccHHHH
Confidence 5677888999999999999988 566676678888998888888887753 34555555422 356899
Q ss_pred HHHHHHhHhcCCcEEEecCC----CCHHHHHHHH----HhCCCCceeeeeeecCCCC-CCCCHHHHHhc
Q 012478 243 LRRSRAFADAGADVLFIDAL----ASKEEMKAFC----EISPLVPKMANMLEGGGKT-PILNPLELEEL 302 (462)
Q Consensus 243 I~RakAy~eAGAD~Ifie~~----~s~eei~~i~----~~v~~vP~~~N~l~~~g~t-P~ls~~eL~~l 302 (462)
++.++.++++|||++++-.+ .+.+++.++. +..+ +|+++=-. +..+ -.++++.+.+|
T Consensus 82 i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~-~pi~iYn~--P~~tg~~l~~~~~~~L 147 (281)
T cd00408 82 IELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADASD-LPVILYNI--PGRTGVDLSPETIARL 147 (281)
T ss_pred HHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCC-CCEEEEEC--ccccCCCCCHHHHHHH
Confidence 99999999999999988543 3445555443 3332 56532211 2211 24677666665
No 64
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=97.37 E-value=0.0044 Score=61.95 Aligned_cols=123 Identities=22% Similarity=0.294 Sum_probs=83.5
Q ss_pred CHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHH
Q 012478 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (462)
Q Consensus 163 ~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeA 242 (462)
|.....+.++.+++.|+.||.+ ||+++.-...+.+|-.+-++.++++.. ...-|++=+- ....+++
T Consensus 17 D~~~~~~~i~~l~~~Gv~Gi~~--------~GstGE~~~Ls~~Er~~~~~~~~~~~~---~~~~vi~gv~---~~s~~~~ 82 (285)
T TIGR00674 17 DFAALEKLIDFQIENGTDAIVV--------VGTTGESPTLSHEEHKKVIEFVVDLVN---GRVPVIAGTG---SNATEEA 82 (285)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE--------CccCcccccCCHHHHHHHHHHHHHHhC---CCCeEEEeCC---CccHHHH
Confidence 5567888899999999999988 566776678889988888888877653 3454554442 2357999
Q ss_pred HHHHHHhHhcCCcEEEecCC----CCHHHHHHHH----HhCCCCcee-eeeeecCCCCCCCCHHHHHhc
Q 012478 243 LRRSRAFADAGADVLFIDAL----ASKEEMKAFC----EISPLVPKM-ANMLEGGGKTPILNPLELEEL 302 (462)
Q Consensus 243 I~RakAy~eAGAD~Ifie~~----~s~eei~~i~----~~v~~vP~~-~N~l~~~g~tP~ls~~eL~~l 302 (462)
|++++.++++|||+|++-.+ .+.+++.++. +..+ +|++ .|.-...| + .++++.+.+|
T Consensus 83 i~~a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~~-~pi~lYn~P~~tg-~-~l~~~~l~~L 148 (285)
T TIGR00674 83 ISLTKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEVD-LPIILYNVPSRTG-V-SLYPETVKRL 148 (285)
T ss_pred HHHHHHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcCC-CCEEEEECcHHhc-C-CCCHHHHHHH
Confidence 99999999999999987543 3556665543 4443 4543 33211111 1 4566665555
No 65
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=97.36 E-value=0.0083 Score=57.70 Aligned_cols=178 Identities=20% Similarity=0.262 Sum_probs=100.9
Q ss_pred ChHH-HHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHH
Q 012478 98 DALS-AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIK 176 (462)
Q Consensus 98 DalS-Arl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~ 176 (462)
|+.. |+..++.|++.+++-... ++..|.+. . .+..+.+++.+++||.++. |..+.+++ +.+.+
T Consensus 29 dp~~~a~~~~~~g~~~l~v~dl~--~~~~g~~~----~----~~~i~~i~~~~~~pi~~gg--GI~~~ed~----~~~~~ 92 (230)
T TIGR00007 29 DPVEAAKKWEEEGAERIHVVDLD--GAKEGGPV----N----LPVIKKIVRETGVPVQVGG--GIRSLEDV----EKLLD 92 (230)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCC--ccccCCCC----c----HHHHHHHHHhcCCCEEEeC--CcCCHHHH----HHHHH
Confidence 5444 467788999999984322 11113221 1 3456677777789999964 55554444 56667
Q ss_pred hCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEE---EecchhhcccH-----HHHHHHHHH
Q 012478 177 AGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIV---ARTDSRQALSL-----EESLRRSRA 248 (462)
Q Consensus 177 AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIi---ARTDA~~~~gl-----deAI~RakA 248 (462)
+||+.|.+=.-. +-+.+. ++.+.+. .|.+-++. .|-.-....+. ...++.++.
T Consensus 93 ~Ga~~vvlgs~~------------l~d~~~----~~~~~~~---~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~ 153 (230)
T TIGR00007 93 LGVDRVIIGTAA------------VENPDL----VKELLKE---YGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKR 153 (230)
T ss_pred cCCCEEEEChHH------------hhCHHH----HHHHHHH---hCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHH
Confidence 999999773322 111222 2222222 22222221 12110000111 234678899
Q ss_pred hHhcCCcEEEecCC--------CCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 012478 249 FADAGADVLFIDAL--------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (462)
Q Consensus 249 y~eAGAD~Ifie~~--------~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~ll~ 315 (462)
|.+.||+.+.+..+ .+.+.++++++.++ +|+.++ +|-...-+.+++.+.|+..|+.+..++.
T Consensus 154 ~~~~g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~~~-ipvia~----GGi~~~~di~~~~~~Gadgv~ig~a~~~ 223 (230)
T TIGR00007 154 LEELGLEGIIYTDISRDGTLSGPNFELTKELVKAVN-VPVIAS----GGVSSIDDLIALKKLGVYGVIVGKALYE 223 (230)
T ss_pred HHhCCCCEEEEEeecCCCCcCCCCHHHHHHHHHhCC-CCEEEe----CCCCCHHHHHHHHHCCCCEEEEeHHHHc
Confidence 99999998776644 34577888888754 565543 3432222456677899999999887654
No 66
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=97.35 E-value=0.0055 Score=61.35 Aligned_cols=123 Identities=23% Similarity=0.308 Sum_probs=83.9
Q ss_pred CHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHH
Q 012478 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (462)
Q Consensus 163 ~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeA 242 (462)
|.....+.++.+++.|+.||.+ ||+++.-...+.+|-.+-++.++++.. +++-|++=+-+ .+.+++
T Consensus 20 D~~~l~~~i~~l~~~Gv~gi~~--------~Gs~GE~~~ls~~Er~~~~~~~~~~~~---~~~~vi~gv~~---~~~~~~ 85 (292)
T PRK03170 20 DFAALRKLVDYLIANGTDGLVV--------VGTTGESPTLTHEEHEELIRAVVEAVN---GRVPVIAGTGS---NSTAEA 85 (292)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE--------CCcCCccccCCHHHHHHHHHHHHHHhC---CCCcEEeecCC---chHHHH
Confidence 5567888899999999999998 566666677888888888888877653 34555544322 357999
Q ss_pred HHHHHHhHhcCCcEEEecCC----CCHHHHHHHH----HhCCCCcee-eeeeecCCCCCCCCHHHHHhc
Q 012478 243 LRRSRAFADAGADVLFIDAL----ASKEEMKAFC----EISPLVPKM-ANMLEGGGKTPILNPLELEEL 302 (462)
Q Consensus 243 I~RakAy~eAGAD~Ifie~~----~s~eei~~i~----~~v~~vP~~-~N~l~~~g~tP~ls~~eL~~l 302 (462)
+++++.+.++|||++++-.+ .+.+++.++. +..+ .|++ .|. ....+ -.++.+.+.++
T Consensus 86 i~~a~~a~~~G~d~v~~~pP~~~~~~~~~i~~~~~~ia~~~~-~pv~lYn~-P~~~g-~~l~~~~~~~L 151 (292)
T PRK03170 86 IELTKFAEKAGADGALVVTPYYNKPTQEGLYQHFKAIAEATD-LPIILYNV-PGRTG-VDILPETVARL 151 (292)
T ss_pred HHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCC-CCEEEEEC-ccccC-CCCCHHHHHHH
Confidence 99999999999999988433 3556655544 3343 4543 332 11111 24677776666
No 67
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.34 E-value=0.0067 Score=61.68 Aligned_cols=125 Identities=26% Similarity=0.347 Sum_probs=88.2
Q ss_pred CCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccH
Q 012478 160 GYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSL 239 (462)
Q Consensus 160 GyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gl 239 (462)
|-=|.....+.++.+++.|++||.+ ||+++.-...+.+|..+-++.++++.. ...-|++=+-+ ...
T Consensus 20 g~vD~~a~~~lv~~li~~Gv~gi~~--------~GttGE~~~Ls~eEr~~v~~~~v~~~~---grvpviaG~g~---~~t 85 (299)
T COG0329 20 GSVDEEALRRLVEFLIAAGVDGLVV--------LGTTGESPTLTLEERKEVLEAVVEAVG---GRVPVIAGVGS---NST 85 (299)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEE--------CCCCccchhcCHHHHHHHHHHHHHHHC---CCCcEEEecCC---CcH
Confidence 4346678889999999999999998 667777778899999988899888864 23435555433 357
Q ss_pred HHHHHHHHHhHhcCCcEEEecCC----CCHH----HHHHHHHhCCCCcee-eeeeecCCCC-CCCCHHHHHhc
Q 012478 240 EESLRRSRAFADAGADVLFIDAL----ASKE----EMKAFCEISPLVPKM-ANMLEGGGKT-PILNPLELEEL 302 (462)
Q Consensus 240 deAI~RakAy~eAGAD~Ifie~~----~s~e----ei~~i~~~v~~vP~~-~N~l~~~g~t-P~ls~~eL~~l 302 (462)
+|+|+.++.++++|||+|++-.+ ++.+ ..++++++.. +|++ .|. |+.+ ..++++.+.++
T Consensus 86 ~eai~lak~a~~~Gad~il~v~PyY~k~~~~gl~~hf~~ia~a~~-lPvilYN~---P~~tg~~l~~e~i~~l 154 (299)
T COG0329 86 AEAIELAKHAEKLGADGILVVPPYYNKPSQEGLYAHFKAIAEAVD-LPVILYNI---PSRTGVDLSPETIARL 154 (299)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCcCCChHHHHHHHHHHHHhcC-CCEEEEeC---ccccCCCCCHHHHHHH
Confidence 99999999999999999987543 2323 4455566663 5653 342 2222 35666666655
No 68
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=97.34 E-value=0.0057 Score=61.64 Aligned_cols=119 Identities=18% Similarity=0.252 Sum_probs=84.4
Q ss_pred CHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHH
Q 012478 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (462)
Q Consensus 163 ~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeA 242 (462)
|.....+.++.+++.|++||.+ ||+++.-..++.+|..+-++.++++.. ..+-|++-+- . ..+|+
T Consensus 24 D~~~l~~li~~l~~~Gv~gi~v--------~GstGE~~~Lt~eEr~~v~~~~~~~~~---g~~pvi~gv~---~-~t~~a 88 (296)
T TIGR03249 24 DEAAYRENIEWLLGYGLEALFA--------AGGTGEFFSLTPAEYEQVVEIAVSTAK---GKVPVYTGVG---G-NTSDA 88 (296)
T ss_pred CHHHHHHHHHHHHhcCCCEEEE--------CCCCcCcccCCHHHHHHHHHHHHHHhC---CCCcEEEecC---c-cHHHH
Confidence 5677889999999999999998 566776778899999888888887753 3555565553 1 47999
Q ss_pred HHHHHHhHhcCCcEEEecCC----CCHHHHHH----HHHhCCCCce-eeeeeecCCCCCCCCHHHHHhc
Q 012478 243 LRRSRAFADAGADVLFIDAL----ASKEEMKA----FCEISPLVPK-MANMLEGGGKTPILNPLELEEL 302 (462)
Q Consensus 243 I~RakAy~eAGAD~Ifie~~----~s~eei~~----i~~~v~~vP~-~~N~l~~~g~tP~ls~~eL~~l 302 (462)
|++++.+.++|||++++-.+ .+.+++.+ +++..+ +|+ +.| ..| . .++++.+.+|
T Consensus 89 i~~a~~a~~~Gadav~~~pP~y~~~s~~~i~~~f~~v~~a~~-~pvilYn---~~g-~-~l~~~~~~~L 151 (296)
T TIGR03249 89 IEIARLAEKAGADGYLLLPPYLINGEQEGLYAHVEAVCESTD-LGVIVYQ---RDN-A-VLNADTLERL 151 (296)
T ss_pred HHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHhccC-CCEEEEe---CCC-C-CCCHHHHHHH
Confidence 99999999999999987543 35555544 444443 464 445 112 1 4666666655
No 69
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=97.34 E-value=0.0074 Score=62.01 Aligned_cols=197 Identities=14% Similarity=0.061 Sum_probs=120.6
Q ss_pred ccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHh-hcCCcEEEeCCCCCC-CHHHHHHHHH
Q 012478 95 ACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQ-AVSIPVIGDGDNGYG-NAMNVKRTVK 172 (462)
Q Consensus 95 ~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~r-a~~iPVIaD~DtGyG-~~~nv~rtVk 172 (462)
|.=|...=+++.+.|...++.|-+-.+.. +-+.+. .++ +.. -...|+++-+ +| ++....++++
T Consensus 10 g~Td~~fR~l~~~~g~~~~~~TEMv~a~~-l~~~~~-----~~~------l~~~~~e~p~~vQl---~g~~p~~~~~aA~ 74 (318)
T TIGR00742 10 DWTDRHFRYFLRLLSKHTLLYTEMITAKA-IIHGDK-----KDI------LKFSPEESPVALQL---GGSDPNDLAKCAK 74 (318)
T ss_pred CCcCHHHHHHHHHhCCCCEEEeCCEEEhh-hhccCH-----HHH------cccCCCCCcEEEEE---ccCCHHHHHHHHH
Confidence 77777777788888874344443221111 111110 011 111 1247888765 34 5788899999
Q ss_pred HHHHhCccEEEeCCCCC-CCCCCCCCCCccc-CHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhH
Q 012478 173 GYIKAGFAGIILEDQVS-PKGCGHTRGRKVV-SREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFA 250 (462)
Q Consensus 173 ~l~~AGaaGI~IEDq~~-PKrCGH~~gk~Lv-p~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~ 250 (462)
.+.+.|+++|.|-=+.. +|.+....|-.|. .++...+-+++++++. +..+-|--|.--......+++++-++.+.
T Consensus 75 ~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~---~~PVsvKiR~g~~~~~~~~~~~~~~~~l~ 151 (318)
T TIGR00742 75 IAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAV---NIPVTVKHRIGIDPLDSYEFLCDFVEIVS 151 (318)
T ss_pred HHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHh---CCCeEEEEecCCCCcchHHHHHHHHHHHH
Confidence 99999999999977752 3333322233343 4555555555555543 34566666652211234578889999999
Q ss_pred hcCCcEEEecCCC-----------------CHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhc--CCCEEeccc
Q 012478 251 DAGADVLFIDALA-----------------SKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEEL--GFKLVAYPL 311 (462)
Q Consensus 251 eAGAD~Ifie~~~-----------------s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~l--Gv~~V~yp~ 311 (462)
++|||+|-+++-+ +.+.+.++.+.++.+|+..| |+ ..+.++..++ |+..|..+-
T Consensus 152 ~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~~ipVi~N----Gd---I~s~~da~~~l~g~dgVMigR 224 (318)
T TIGR00742 152 GKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFPHLTIEIN----GG---IKNSEQIKQHLSHVDGVMVGR 224 (318)
T ss_pred HcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCCCCcEEEE----CC---cCCHHHHHHHHhCCCEEEECH
Confidence 9999999999853 23567777777755787766 23 3466665544 899888877
Q ss_pred hHHHH
Q 012478 312 SLIGV 316 (462)
Q Consensus 312 ~ll~a 316 (462)
.++.-
T Consensus 225 gal~n 229 (318)
T TIGR00742 225 EAYEN 229 (318)
T ss_pred HHHhC
Confidence 76653
No 70
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=97.33 E-value=0.0058 Score=61.22 Aligned_cols=124 Identities=20% Similarity=0.168 Sum_probs=83.5
Q ss_pred CCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccH
Q 012478 160 GYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSL 239 (462)
Q Consensus 160 GyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gl 239 (462)
|-=+.....+.++.+++.|+.||.+ ||+++.-...+.+|-.+-++.++++. + . + ++-+- ....
T Consensus 15 g~iD~~~~~~li~~l~~~Gv~Gl~~--------~GstGE~~~Lt~eEr~~l~~~~~~~~---~-~-v-i~gvg---~~~~ 77 (279)
T cd00953 15 NKIDKEKFKKHCENLISKGIDYVFV--------AGTTGLGPSLSFQEKLELLKAYSDIT---D-K-V-IFQVG---SLNL 77 (279)
T ss_pred CCcCHHHHHHHHHHHHHcCCcEEEE--------cccCCCcccCCHHHHHHHHHHHHHHc---C-C-E-EEEeC---cCCH
Confidence 4336678899999999999999998 67777777889999888888887764 2 2 3 33332 2467
Q ss_pred HHHHHHHHHhHhcCCcEEEecCC-----CCHHHHHHHHHhCC-CCcee-eeeeecCCCC-CCCCHHHHHhcC
Q 012478 240 EESLRRSRAFADAGADVLFIDAL-----ASKEEMKAFCEISP-LVPKM-ANMLEGGGKT-PILNPLELEELG 303 (462)
Q Consensus 240 deAI~RakAy~eAGAD~Ifie~~-----~s~eei~~i~~~v~-~vP~~-~N~l~~~g~t-P~ls~~eL~~lG 303 (462)
+++|++++.++++|||++++-.+ ++.+++.+.-+.+. .+|++ .|. +..+ -.++++.+.+|-
T Consensus 78 ~~ai~~a~~a~~~Gad~v~v~~P~y~~~~~~~~i~~yf~~v~~~lpv~iYn~---P~~tg~~l~~~~l~~L~ 146 (279)
T cd00953 78 EESIELARAAKSFGIYAIASLPPYYFPGIPEEWLIKYFTDISSPYPTFIYNY---PKATGYDINARMAKEIK 146 (279)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcCCCCCCHHHHHHHHHHHHhcCCEEEEeC---ccccCCCCCHHHHHHHH
Confidence 99999999999999999987322 25566655443321 24543 332 2222 246666666553
No 71
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=97.32 E-value=0.0043 Score=60.31 Aligned_cols=177 Identities=18% Similarity=0.190 Sum_probs=101.7
Q ss_pred HHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHHhCcc
Q 012478 101 SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFA 180 (462)
Q Consensus 101 SArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaa 180 (462)
-|+.++++|++.+++....-. ..+. ...++.++.|++.+++||+++.. ..+..++ +.+.+.|++
T Consensus 32 ~a~~~~~~G~~~i~i~d~~~~--~~~~--------~~~~~~i~~i~~~~~~pv~~~GG--I~s~~d~----~~~l~~G~~ 95 (243)
T cd04731 32 LAKRYNEQGADELVFLDITAS--SEGR--------ETMLDVVERVAEEVFIPLTVGGG--IRSLEDA----RRLLRAGAD 95 (243)
T ss_pred HHHHHHHCCCCEEEEEcCCcc--cccC--------cccHHHHHHHHHhCCCCEEEeCC--CCCHHHH----HHHHHcCCc
Confidence 457788899998888853321 0111 11346677788888999998743 3344344 455568999
Q ss_pred EEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCC-eE--EEEe----------cchhhcccHHHHHHHHH
Q 012478 181 GIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSD-IV--IVAR----------TDSRQALSLEESLRRSR 247 (462)
Q Consensus 181 GI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d-~v--IiAR----------TDA~~~~gldeAI~Rak 247 (462)
++.+--.. + -.+ ++..+|.... +.+ ++ |-.| |+........++++.++
T Consensus 96 ~v~ig~~~------~------~~p-~~~~~i~~~~------~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~ 156 (243)
T cd04731 96 KVSINSAA------V------ENP-ELIREIAKRF------GSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAK 156 (243)
T ss_pred eEEECchh------h------hCh-HHHHHHHHHc------CCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHH
Confidence 99773221 1 122 3344442221 112 11 1111 11111112345678889
Q ss_pred HhHhcCCcEEEecCCCC--------HHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhc-CCCEEeccchHHHHH
Q 012478 248 AFADAGADVLFIDALAS--------KEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEEL-GFKLVAYPLSLIGVS 317 (462)
Q Consensus 248 Ay~eAGAD~Ifie~~~s--------~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~l-Gv~~V~yp~~ll~aa 317 (462)
.+.++|+|.|.+.++.. .+.++++.+.++ +|+.++ ||-...-..+++.+. |+..|+.+..++..-
T Consensus 157 ~l~~~G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~-~pvia~----GGi~~~~di~~~l~~~g~dgv~vg~al~~~~ 230 (243)
T cd04731 157 EVEELGAGEILLTSMDRDGTKKGYDLELIRAVSSAVN-IPVIAS----GGAGKPEHFVEAFEEGGADAALAASIFHFGE 230 (243)
T ss_pred HHHHCCCCEEEEeccCCCCCCCCCCHHHHHHHHhhCC-CCEEEe----CCCCCHHHHHHHHHhCCCCEEEEeHHHHcCC
Confidence 99999999998876643 467888887764 676544 342211234555566 899998877665543
No 72
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=97.27 E-value=0.25 Score=51.74 Aligned_cols=224 Identities=13% Similarity=0.160 Sum_probs=145.4
Q ss_pred HHHHHHHhCCCceEecccCChHHHHHH----HHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhc-CCcE
Q 012478 79 KSLRQILELPGVHQGPACFDALSAKLV----EKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV-SIPV 153 (462)
Q Consensus 79 ~~LR~ll~~~~~iv~p~ayDalSArl~----e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~-~iPV 153 (462)
+-|....+.+-.+.+.|+|+.-+++.+ |+.+.+.|+..+-+.. ....++.+...++.+++.. ++||
T Consensus 8 ~lL~~A~~~~yaV~AfN~~n~e~~~avi~AAEe~~sPvIlq~s~~~~---------~~~g~~~~~~~v~~~ae~~~~VPV 78 (347)
T PRK13399 8 QLLDHAAENGYGVPAFNVNNMEQILAIMEAAEATDSPVILQASRGAR---------KYAGDAMLRHMVLAAAEMYPDIPI 78 (347)
T ss_pred HHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEECCcchh---------hhCCHHHHHHHHHHHHHhcCCCcE
Confidence 345555555656889999999998654 6678998887754321 1133555777777777777 4999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCC-CCCcccCHHHHHHHHHHHHHHHHhhCC----CeEEE
Q 012478 154 IGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHT-RGRKVVSREEAVMRIKAAVDARKESGS----DIVIV 228 (462)
Q Consensus 154 IaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~-~gk~Lvp~ee~~~kI~AA~~Ar~~~g~----d~vIi 228 (462)
.+=.|+|. +. +.+++.+++|...|.|... |. .+|.-.|.+|=+++-+.+++.++..|. ++=.+
T Consensus 79 aLHLDHg~-~~----e~i~~Ai~~GFtSVMiDgS-------~l~~~~~~~~~eeNI~~Trevve~Ah~~GvsVEaELG~i 146 (347)
T PRK13399 79 CLHQDHGN-SP----ATCQSAIRSGFTSVMMDGS-------LLADGKTPASYDYNVDVTRRVTEMAHAVGVSVEGELGCL 146 (347)
T ss_pred EEECCCCC-CH----HHHHHHHhcCCCEEEEeCC-------CCCCCCCccCHHHHHHHHHHHHHHHHHcCCeEEEEeeec
Confidence 99999996 33 3456777899999999443 43 255567889888888888877764331 11112
Q ss_pred Eec--------chhhcc-----c-HHHHHHHHHHhHh-cCCcEEEe-----cCC-----------CCHHHHHHHHHhCCC
Q 012478 229 ART--------DSRQAL-----S-LEESLRRSRAFAD-AGADVLFI-----DAL-----------ASKEEMKAFCEISPL 277 (462)
Q Consensus 229 ART--------DA~~~~-----g-ldeAI~RakAy~e-AGAD~Ifi-----e~~-----------~s~eei~~i~~~v~~ 277 (462)
+.. |..... . +----+.|+.|.+ .|+|++-+ +++ -+.+.+++|.+.++.
T Consensus 147 gg~e~~~~g~ed~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~~ 226 (347)
T PRK13399 147 GSLETGEAGEEDGVGAEGKLSHDQMLTDPDQAVDFVQRTGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLPN 226 (347)
T ss_pred cCcccccccccCCccccccccccccCCCHHHHHHHHHHHCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcCC
Confidence 221 110000 0 0001345666664 69998753 332 124578888888754
Q ss_pred CceeeeeeecCCCCC------------------CCCHHHHH---hcCCCEEeccchHHHHHHHHHHHHHH
Q 012478 278 VPKMANMLEGGGKTP------------------ILNPLELE---ELGFKLVAYPLSLIGVSVRAMQDALT 326 (462)
Q Consensus 278 vP~~~N~l~~~g~tP------------------~ls~~eL~---~lGv~~V~yp~~ll~aa~~Am~~~l~ 326 (462)
+|+ ++.|+..+| .++.++++ ++|++-|-+..-+..+.+.++++.+.
T Consensus 227 vPL---VLHGgSGvp~~~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KINi~Tdl~~a~~~~~~~~~~ 293 (347)
T PRK13399 227 THL---VMHGSSSVPQELQEIINAYGGKMKETYGVPVEEIQRGIKHGVRKVNIDTDIRLAMTGAIRKVLA 293 (347)
T ss_pred CCE---EEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCeEEEeChHHHHHHHHHHHHHHH
Confidence 675 456543344 23455555 68999999999999999999988864
No 73
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=97.26 E-value=0.097 Score=53.36 Aligned_cols=213 Identities=17% Similarity=0.175 Sum_probs=138.1
Q ss_pred HHHHHHhCCCceEecccCChHHHHH----HHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcC--CcE
Q 012478 80 SLRQILELPGVHQGPACFDALSAKL----VEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVS--IPV 153 (462)
Q Consensus 80 ~LR~ll~~~~~iv~p~ayDalSArl----~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~--iPV 153 (462)
-|....+.+-.+-+.|+||.-+++. +|+.+.+.|+..+-+.. .+ ..+++.+...++.+++..+ +||
T Consensus 9 lL~~A~~~~yAV~AfN~~n~e~~~avi~AAe~~~sPvIiq~~~~~~----~~----~~~~~~~~~~~~~~a~~~~~~VPV 80 (285)
T PRK07709 9 MLNKALEGKYAVGQFNMNNLEWTQAILAAAEEEKSPVILGVSEGAA----RH----MTGFKTVVAMVKALIEEMNITVPV 80 (285)
T ss_pred HHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCcchh----hh----cCCHHHHHHHHHHHHHHcCCCCcE
Confidence 4555555555688889999999854 46678998886643321 11 0235556677777777655 899
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCC----CeEEEE
Q 012478 154 IGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGS----DIVIVA 229 (462)
Q Consensus 154 IaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~----d~vIiA 229 (462)
.+=.|.|. + .+.+++.+++|...|.| |.. | .|.+|=+++-+.+++-++..|. ++=-++
T Consensus 81 ~lHLDHg~-~----~e~i~~ai~~GftSVM~-DgS------~------lp~eeNi~~Trevv~~Ah~~gv~VEaElG~ig 142 (285)
T PRK07709 81 AIHLDHGS-S----FEKCKEAIDAGFTSVMI-DAS------H------HPFEENVETTKKVVEYAHARNVSVEAELGTVG 142 (285)
T ss_pred EEECCCCC-C----HHHHHHHHHcCCCEEEE-eCC------C------CCHHHHHHHHHHHHHHHHHcCCEEEEEEeccC
Confidence 99999995 3 34445777899999999 442 3 3677777777777766654331 111122
Q ss_pred ecchh-h-----cccHHHHHHHHHHhHh-cCCcEEEe-----cCC------CCHHHHHHHHHhCCCCceeeeeeecCCCC
Q 012478 230 RTDSR-Q-----ALSLEESLRRSRAFAD-AGADVLFI-----DAL------ASKEEMKAFCEISPLVPKMANMLEGGGKT 291 (462)
Q Consensus 230 RTDA~-~-----~~gldeAI~RakAy~e-AGAD~Ifi-----e~~------~s~eei~~i~~~v~~vP~~~N~l~~~g~t 291 (462)
..+.. . -.+. +.|+.|.+ .|+|++-+ +|. -+.+.+++|.+.++ +|+ ++.|+..+
T Consensus 143 g~ed~~~~~~~~yT~p----eeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~~-iPL---VLHGgSG~ 214 (285)
T PRK07709 143 GQEDDVIAEGVIYADP----AECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTG-VPL---VLHGGTGI 214 (285)
T ss_pred CccCCcccccccCCCH----HHHHHHHHHhCCCEEEEeecccccCcCCCCccCHHHHHHHHHHHC-CCE---EEeCCCCC
Confidence 22110 0 0123 45666664 79999875 332 24678888888774 675 56654333
Q ss_pred CCCCHHHHHhcCCCEEeccchHHHHHHHHHHHHHH
Q 012478 292 PILNPLELEELGFKLVAYPLSLIGVSVRAMQDALT 326 (462)
Q Consensus 292 P~ls~~eL~~lGv~~V~yp~~ll~aa~~Am~~~l~ 326 (462)
|.-....+-++|++-|-+..-+..+..+++++.+.
T Consensus 215 ~~e~~~~ai~~Gi~KiNi~T~l~~a~~~~~~~~~~ 249 (285)
T PRK07709 215 PTADIEKAISLGTSKINVNTENQIEFTKAVREVLN 249 (285)
T ss_pred CHHHHHHHHHcCCeEEEeChHHHHHHHHHHHHHHH
Confidence 33334445578999999999999999999988864
No 74
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=97.24 E-value=0.0065 Score=60.78 Aligned_cols=153 Identities=18% Similarity=0.199 Sum_probs=108.0
Q ss_pred Cceeeccccc-CCCccccccCchHHHHHHHHhCCCceEecccCChHHHHHHHHhCCcEEEeccHHHHh-------hhccC
Q 012478 56 GTINRTRVYR-KNSTGVEACLSPAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISA-------ARLAL 127 (462)
Q Consensus 56 r~~~~~R~y~-rgs~~~~~a~~~a~~LR~ll~~~~~iv~p~ayDalSArl~e~aGfdaI~vSG~avSa-------s~lG~ 127 (462)
.||.++++|+ ||-- ...-+.|++..++-+..++-.+||.-++..+++. .|++.++|.-+.. +..|.
T Consensus 60 ~~KpRtsp~s~~g~g-----~~gl~~l~~~~~~~Gl~~~t~~~d~~~~~~l~~~-~d~lkI~s~~~~n~~LL~~~a~~gk 133 (260)
T TIGR01361 60 AFKPRTSPYSFQGLG-----EEGLKLLRRAADEHGLPVVTEVMDPRDVEIVAEY-ADILQIGARNMQNFELLKEVGKQGK 133 (260)
T ss_pred eecCCCCCccccccH-----HHHHHHHHHHHHHhCCCEEEeeCChhhHHHHHhh-CCEEEECcccccCHHHHHHHhcCCC
Confidence 5677777776 3321 3445678888888888889999999999999998 9999999765543 23466
Q ss_pred CC---CCCC-CHHHHHHHHHHHHh----------------------------------hcCCcEEEeCCCCCCCHHHHHH
Q 012478 128 PD---TGFI-SYGEMVDQGQLITQ----------------------------------AVSIPVIGDGDNGYGNAMNVKR 169 (462)
Q Consensus 128 PD---~g~v-sl~Eml~~~~~I~r----------------------------------a~~iPVIaD~DtGyG~~~nv~r 169 (462)
|= +|.- +++|+...++.|.+ ..++||+.|.++.-|..+-+..
T Consensus 134 PVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~~~pV~~ds~Hs~G~r~~~~~ 213 (260)
T TIGR01361 134 PVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCERGIRTFEKATRNTLDLSAVPVLKKETHLPIIVDPSHAAGRRDLVIP 213 (260)
T ss_pred cEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhhCCCEEEcCCCCCCccchHHH
Confidence 53 3444 89999888777743 1368999999997675555555
Q ss_pred HHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHH
Q 012478 170 TVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAV 215 (462)
Q Consensus 170 tVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~ 215 (462)
..+..+.+||.|+.||=-..|.+-- .+++.-++++|+..-++.++
T Consensus 214 ~~~aAva~Ga~gl~iE~H~t~d~a~-~D~~~sl~p~~l~~lv~~i~ 258 (260)
T TIGR01361 214 LAKAAIAAGADGLMIEVHPDPEKAL-SDSKQQLTPEEFKRLVKELR 258 (260)
T ss_pred HHHHHHHcCCCEEEEEeCCCccccC-CcchhcCCHHHHHHHHHHHh
Confidence 5666778999999999766553321 45566677777766655443
No 75
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=97.23 E-value=0.0085 Score=59.60 Aligned_cols=124 Identities=23% Similarity=0.328 Sum_probs=82.8
Q ss_pred CHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHH
Q 012478 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (462)
Q Consensus 163 ~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeA 242 (462)
|.....+.++.++++|+.||-+ ||+++.-...+.+|..+-++.++++.. .++.|++=+- ....+|+
T Consensus 19 D~~~~~~~i~~l~~~Gv~gl~v--------~GstGE~~~lt~~Er~~l~~~~~~~~~---~~~~vi~gv~---~~~~~~~ 84 (284)
T cd00950 19 DFDALERLIEFQIENGTDGLVV--------CGTTGESPTLSDEEHEAVIEAVVEAVN---GRVPVIAGTG---SNNTAEA 84 (284)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE--------CCCCcchhhCCHHHHHHHHHHHHHHhC---CCCcEEeccC---CccHHHH
Confidence 5567888899999999999998 556665567888888888888877653 3555554432 2357899
Q ss_pred HHHHHHhHhcCCcEEEecCC----CCHHHHHHHHHhC---CCCcee-eeeeecCCCCCCCCHHHHHhc
Q 012478 243 LRRSRAFADAGADVLFIDAL----ASKEEMKAFCEIS---PLVPKM-ANMLEGGGKTPILNPLELEEL 302 (462)
Q Consensus 243 I~RakAy~eAGAD~Ifie~~----~s~eei~~i~~~v---~~vP~~-~N~l~~~g~tP~ls~~eL~~l 302 (462)
+++++.++++|||.|++-.+ .+.+++.++.+.+ ...|++ .|. .... .-.++++.+.++
T Consensus 85 ~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~~~~pi~lYn~-P~~~-g~~ls~~~~~~L 150 (284)
T cd00950 85 IELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEATDLPVILYNV-PGRT-GVNIEPETVLRL 150 (284)
T ss_pred HHHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhcCCCCEEEEEC-hhHh-CCCCCHHHHHHH
Confidence 99999999999999887543 3556665544332 125653 332 1101 124676666655
No 76
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=97.22 E-value=0.0075 Score=63.04 Aligned_cols=161 Identities=16% Similarity=0.154 Sum_probs=114.7
Q ss_pred CCCceeeccccc-CCCccccccCchHHHHHHHHhCCCceEecccCChHHHHHHHHhCCcEEEeccHHHHhh-------hc
Q 012478 54 NPGTINRTRVYR-KNSTGVEACLSPAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAA-------RL 125 (462)
Q Consensus 54 ~Pr~~~~~R~y~-rgs~~~~~a~~~a~~LR~ll~~~~~iv~p~ayDalSArl~e~aGfdaI~vSG~avSas-------~l 125 (462)
-.-|+.+++||+ +| + ....-+.|++..++-+..++-.+||.-++.++.+. .|++.+++.-+.+. ..
T Consensus 134 ~g~~kpRtsp~sf~G-~----g~~gl~~L~~~~~e~Gl~~~tev~d~~~v~~~~~~-~d~lqIga~~~~n~~LL~~va~t 207 (352)
T PRK13396 134 GGAYKPRTSPYAFQG-H----GESALELLAAAREATGLGIITEVMDAADLEKIAEV-ADVIQVGARNMQNFSLLKKVGAQ 207 (352)
T ss_pred eeeecCCCCCcccCC-c----hHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHhh-CCeEEECcccccCHHHHHHHHcc
Confidence 466777788886 44 1 23445667777777788888999999999999988 89999997665432 23
Q ss_pred cCCC---CCCC-CHHHHHHHHHHHHh-----------------------------------hcCCcEEEeCCCCCCCHHH
Q 012478 126 ALPD---TGFI-SYGEMVDQGQLITQ-----------------------------------AVSIPVIGDGDNGYGNAMN 166 (462)
Q Consensus 126 G~PD---~g~v-sl~Eml~~~~~I~r-----------------------------------a~~iPVIaD~DtGyG~~~n 166 (462)
|.|= .|.- +++|++..++.|.. .+++|||+|.=++-|....
T Consensus 208 ~kPVllk~G~~~t~ee~~~A~e~i~~~Gn~~viL~erG~rtf~s~y~~~~~dl~ai~~lk~~~~lPVi~DpsH~~G~sd~ 287 (352)
T PRK13396 208 DKPVLLKRGMAATIDEWLMAAEYILAAGNPNVILCERGIRTFDRQYTRNTLDLSVIPVLRSLTHLPIMIDPSHGTGKSEY 287 (352)
T ss_pred CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEecCCccCcCCCCCCCcCHHHHHHHHHhhCCCEEECCcccCCcHHH
Confidence 5553 2444 88999888877732 1368999999987665555
Q ss_pred HHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhh
Q 012478 167 VKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKES 221 (462)
Q Consensus 167 v~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~ 221 (462)
+....+..+.+||+|+.||=-..|.+-- .++..-++++++.+-++.++.....+
T Consensus 288 ~~~~a~AAva~GAdGliIE~H~~pd~Al-sD~~qsl~p~~~~~l~~~i~~i~~~~ 341 (352)
T PRK13396 288 VPSMAMAAIAAGTDSLMIEVHPNPAKAL-SDGPQSLTPDRFDRLMQELAVIGKTV 341 (352)
T ss_pred HHHHHHHHHhhCCCeEEEEecCCcccCC-ChhhhcCCHHHHHHHHHHHHHHHHHh
Confidence 6667778889999999999876665432 26666677777766666665554433
No 77
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=97.21 E-value=0.0093 Score=60.44 Aligned_cols=119 Identities=18% Similarity=0.266 Sum_probs=83.5
Q ss_pred CHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHH
Q 012478 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (462)
Q Consensus 163 ~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeA 242 (462)
|.....+.++.+++.|++||.+ ||+++.-...+.+|-.+-+++++++.. ..+-|++-+. . +.+++
T Consensus 26 D~~~l~~li~~l~~~Gv~Gi~~--------~GstGE~~~Lt~eEr~~~~~~~~~~~~---~~~pvi~gv~---~-~t~~~ 90 (303)
T PRK03620 26 DEAAYREHLEWLAPYGAAALFA--------AGGTGEFFSLTPDEYSQVVRAAVETTA---GRVPVIAGAG---G-GTAQA 90 (303)
T ss_pred CHHHHHHHHHHHHHcCCCEEEE--------CcCCcCcccCCHHHHHHHHHHHHHHhC---CCCcEEEecC---C-CHHHH
Confidence 5577889999999999999998 566666677889998888888877653 3555555442 2 57899
Q ss_pred HHHHHHhHhcCCcEEEecCC----CCHHHHHH----HHHhCCCCce-eeeeeecCCCCCCCCHHHHHhc
Q 012478 243 LRRSRAFADAGADVLFIDAL----ASKEEMKA----FCEISPLVPK-MANMLEGGGKTPILNPLELEEL 302 (462)
Q Consensus 243 I~RakAy~eAGAD~Ifie~~----~s~eei~~----i~~~v~~vP~-~~N~l~~~g~tP~ls~~eL~~l 302 (462)
++.++.++++|||++++-.+ .+.+++.. +++..+ +|+ +.| .++ . .++++.+.+|
T Consensus 91 i~~~~~a~~~Gadav~~~pP~y~~~~~~~i~~~f~~va~~~~-lpi~lYn---~~g-~-~l~~~~l~~L 153 (303)
T PRK03620 91 IEYAQAAERAGADGILLLPPYLTEAPQEGLAAHVEAVCKSTD-LGVIVYN---RDN-A-VLTADTLARL 153 (303)
T ss_pred HHHHHHHHHhCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCC-CCEEEEc---CCC-C-CCCHHHHHHH
Confidence 99999999999999987543 35555544 444443 564 444 222 2 3666666555
No 78
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=97.17 E-value=0.02 Score=54.73 Aligned_cols=165 Identities=18% Similarity=0.131 Sum_probs=97.8
Q ss_pred HHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHHhCc
Q 012478 100 LSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGF 179 (462)
Q Consensus 100 lSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~AGa 179 (462)
-.|+..+++|+++|.+--.-.+ ..|.+ +..+.|.+.+++||++- ||.-.. +.++.+.++||
T Consensus 35 ~~A~~~~~~GA~~l~v~~~~~~--~~g~~-----------~~~~~i~~~v~iPi~~~---~~i~~~---~~v~~~~~~Ga 95 (217)
T cd00331 35 EIAKAYEKAGAAAISVLTEPKY--FQGSL-----------EDLRAVREAVSLPVLRK---DFIIDP---YQIYEARAAGA 95 (217)
T ss_pred HHHHHHHHcCCCEEEEEeCccc--cCCCH-----------HHHHHHHHhcCCCEEEC---CeecCH---HHHHHHHHcCC
Confidence 4578888999999966532211 11222 34555656668999973 344322 25778889999
Q ss_pred cEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEe
Q 012478 180 AGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFI 259 (462)
Q Consensus 180 aGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifi 259 (462)
+||++ ++. .++.+++.+-++.+ ...|.+.++-..+ .+ +++...+.|+|.+.+
T Consensus 96 d~v~l-~~~------------~~~~~~~~~~~~~~----~~~g~~~~v~v~~-------~~----e~~~~~~~g~~~i~~ 147 (217)
T cd00331 96 DAVLL-IVA------------ALDDEQLKELYELA----RELGMEVLVEVHD-------EE----ELERALALGAKIIGI 147 (217)
T ss_pred CEEEE-eec------------cCCHHHHHHHHHHH----HHcCCeEEEEECC-------HH----HHHHHHHcCCCEEEE
Confidence 99998 332 22333332232322 3345555444432 22 366677899999977
Q ss_pred cCC------CCHHHHHHHHHhCC-CCceeeeeeecCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 012478 260 DAL------ASKEEMKAFCEISP-LVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (462)
Q Consensus 260 e~~------~s~eei~~i~~~v~-~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~ll~ 315 (462)
.+. .+.+.++++.+.++ .+|+ +..+|-...-...++.++|+.-|+.+..++.
T Consensus 148 t~~~~~~~~~~~~~~~~l~~~~~~~~pv----ia~gGI~s~edi~~~~~~Ga~gvivGsai~~ 206 (217)
T cd00331 148 NNRDLKTFEVDLNTTERLAPLIPKDVIL----VSESGISTPEDVKRLAEAGADAVLIGESLMR 206 (217)
T ss_pred eCCCccccCcCHHHHHHHHHhCCCCCEE----EEEcCCCCHHHHHHHHHcCCCEEEECHHHcC
Confidence 632 24466777777653 2333 2223432223567889999999999887664
No 79
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=97.17 E-value=0.0064 Score=60.70 Aligned_cols=97 Identities=26% Similarity=0.366 Sum_probs=71.7
Q ss_pred CHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHH
Q 012478 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (462)
Q Consensus 163 ~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeA 242 (462)
|.....+.++.+++.|+.|+.+ ||+++.-...+.+|..+-++.+++... .++.|++-+-+ .+.+++
T Consensus 20 d~~~~~~~i~~l~~~Gv~gl~~--------~GstGE~~~Lt~~Er~~l~~~~~~~~~---~~~~vi~gv~~---~st~~~ 85 (289)
T PF00701_consen 20 DEDALKRLIDFLIEAGVDGLVV--------LGSTGEFYSLTDEERKELLEIVVEAAA---GRVPVIAGVGA---NSTEEA 85 (289)
T ss_dssp -HHHHHHHHHHHHHTTSSEEEE--------SSTTTTGGGS-HHHHHHHHHHHHHHHT---TSSEEEEEEES---SSHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEE--------CCCCcccccCCHHHHHHHHHHHHHHcc---CceEEEecCcc---hhHHHH
Confidence 5567889999999999999999 556666667888888888888877653 46766766544 357999
Q ss_pred HHHHHHhHhcCCcEEEecCC----CCHHHHHHHHH
Q 012478 243 LRRSRAFADAGADVLFIDAL----ASKEEMKAFCE 273 (462)
Q Consensus 243 I~RakAy~eAGAD~Ifie~~----~s~eei~~i~~ 273 (462)
|++++.+.++|||++++-.+ .+.+++.++.+
T Consensus 86 i~~a~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~ 120 (289)
T PF00701_consen 86 IELARHAQDAGADAVLVIPPYYFKPSQEELIDYFR 120 (289)
T ss_dssp HHHHHHHHHTT-SEEEEEESTSSSCCHHHHHHHHH
T ss_pred HHHHHHHhhcCceEEEEeccccccchhhHHHHHHH
Confidence 99999999999999986433 46566555443
No 80
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=97.15 E-value=0.053 Score=56.15 Aligned_cols=198 Identities=15% Similarity=0.065 Sum_probs=108.5
Q ss_pred HHHHHHhCCcEEEeccHHHHhhhccCCC---------CC--------CCCHHHHHHHHHHHHhhcCCcEEEeCCCCC---
Q 012478 102 AKLVEKSGFSFCFTSGFSISAARLALPD---------TG--------FISYGEMVDQGQLITQAVSIPVIGDGDNGY--- 161 (462)
Q Consensus 102 Arl~e~aGfdaI~vSG~avSas~lG~PD---------~g--------~vsl~Eml~~~~~I~ra~~iPVIaD~DtGy--- 161 (462)
.+.+..+||-++-+.+...- ...|.|. .+ ....+.++++.+... .++|||+-+ .|.
T Consensus 75 ~~~~~~~G~Gavv~ktvt~~-p~~gn~~pr~~~~~~~~~~~N~~gl~n~g~~~~~~~l~~~~--~~~pvivsI-~~~~~~ 150 (344)
T PRK05286 75 IDALGALGFGFVEVGTVTPR-PQPGNPKPRLFRLPEDEALINRMGFNNDGADALAERLKKAY--RGIPLGINI-GKNKDT 150 (344)
T ss_pred HHHHHHcCCCEEEeCCcCCC-CCCCCCCCCEEecccccccccCCCCCCHhHHHHHHHHHHhc--CCCcEEEEE-ecCCCC
Confidence 34456677777777764431 1223331 11 122456666655533 679999998 332
Q ss_pred --C-CHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCC-cccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcc
Q 012478 162 --G-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGR-KVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQAL 237 (462)
Q Consensus 162 --G-~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk-~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~ 237 (462)
. ......+.++++.+ +|+++-|.=. |-|..+. ..-..+.+.+-+++++++......++-|..+.-.. .
T Consensus 151 ~~~~~~~d~~~~~~~~~~-~ad~lelN~s-----cP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~--~ 222 (344)
T PRK05286 151 PLEDAVDDYLICLEKLYP-YADYFTVNIS-----SPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPD--L 222 (344)
T ss_pred CcccCHHHHHHHHHHHHh-hCCEEEEEcc-----CCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCC--C
Confidence 1 34566666666654 6888877543 5554332 23344555555566665543100134455554321 2
Q ss_pred cHHHHHHHHHHhHhcCCcEEEecCCC--------------------------CHHHHHHHHHhCC-CCceeeeeeecCCC
Q 012478 238 SLEESLRRSRAFADAGADVLFIDALA--------------------------SKEEMKAFCEISP-LVPKMANMLEGGGK 290 (462)
Q Consensus 238 gldeAI~RakAy~eAGAD~Ifie~~~--------------------------s~eei~~i~~~v~-~vP~~~N~l~~~g~ 290 (462)
..++..+-+++..++|||.|.+.... +.+.+.++.+.++ .+|+..+ ||-
T Consensus 223 ~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~----GGI 298 (344)
T PRK05286 223 SDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGV----GGI 298 (344)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEE----CCC
Confidence 34578888999999999999986521 1235555656653 2554432 343
Q ss_pred CCCCCHHHHHhcCCCEEeccchHHH
Q 012478 291 TPILNPLELEELGFKLVAYPLSLIG 315 (462)
Q Consensus 291 tP~ls~~eL~~lGv~~V~yp~~ll~ 315 (462)
.-.-+..|+-..|...|..+..++.
T Consensus 299 ~s~eda~e~l~aGAd~V~v~~~~~~ 323 (344)
T PRK05286 299 DSAEDAYEKIRAGASLVQIYSGLIY 323 (344)
T ss_pred CCHHHHHHHHHcCCCHHHHHHHHHH
Confidence 2222345555578887766665543
No 81
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=97.13 E-value=0.0082 Score=60.05 Aligned_cols=150 Identities=12% Similarity=0.107 Sum_probs=106.8
Q ss_pred Cceeeccccc-CCCccccccCchHHHHHHHHhCCCceEecccCChHHHHHHHHhCCcEEEeccHHHHh-------hhccC
Q 012478 56 GTINRTRVYR-KNSTGVEACLSPAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISA-------ARLAL 127 (462)
Q Consensus 56 r~~~~~R~y~-rgs~~~~~a~~~a~~LR~ll~~~~~iv~p~ayDalSArl~e~aGfdaI~vSG~avSa-------s~lG~ 127 (462)
-|+.|++||+ ||- ..+.-+.|.+..++-+..++-.+||.-++..+.+ ..|++.+++.-+.. +..|.
T Consensus 50 ~~kpRts~~sf~G~-----G~~gl~~L~~~~~~~Gl~~~Tev~d~~~v~~~~e-~vdilqIgs~~~~n~~LL~~va~tgk 123 (250)
T PRK13397 50 AYKPRTSAASFQGL-----GLQGIRYLHEVCQEFGLLSVSEIMSERQLEEAYD-YLDVIQVGARNMQNFEFLKTLSHIDK 123 (250)
T ss_pred ccCCCCCCcccCCC-----CHHHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHh-cCCEEEECcccccCHHHHHHHHccCC
Confidence 3667778886 431 1234566777777777888889999999999988 69999999765433 23466
Q ss_pred CC---CC-CCCHHHHHHHHHHHHh----------------------------------hcCCcEEEeCCCCCCCHHHHHH
Q 012478 128 PD---TG-FISYGEMVDQGQLITQ----------------------------------AVSIPVIGDGDNGYGNAMNVKR 169 (462)
Q Consensus 128 PD---~g-~vsl~Eml~~~~~I~r----------------------------------a~~iPVIaD~DtGyG~~~nv~r 169 (462)
|= .| ..+++|+...++.|.. ..++|||+|.-+.-|...-|..
T Consensus 124 PVilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~~lPVivd~SHs~G~r~~v~~ 203 (250)
T PRK13397 124 PILFKRGLMATIEEYLGALSYLQDTGKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKTDLPIIVDVSHSTGRRDLLLP 203 (250)
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEccccCCCCCccccccCHHHHHHHHHHhCCCeEECCCCCCcccchHHH
Confidence 53 35 7889999888777743 1468999998876565555666
Q ss_pred HHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHH
Q 012478 170 TVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIK 212 (462)
Q Consensus 170 tVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~ 212 (462)
..+..+.+||+|+.||=...|.+- -.+|..-++.+++.+-++
T Consensus 204 ~a~AAvA~GAdGl~IE~H~~P~~A-~sD~~q~l~~~~l~~l~~ 245 (250)
T PRK13397 204 AAKIAKAVGANGIMMEVHPDPDHA-LSDAAQQIDYKQLEQLGQ 245 (250)
T ss_pred HHHHHHHhCCCEEEEEecCCcccc-cCchhhhCCHHHHHHHHH
Confidence 677778899999999987766543 345666777777655444
No 82
>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate. There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....
Probab=97.10 E-value=0.017 Score=58.67 Aligned_cols=212 Identities=18% Similarity=0.225 Sum_probs=136.9
Q ss_pred HHHHHhCCCceEecccCChHHHHH----HHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEe
Q 012478 81 LRQILELPGVHQGPACFDALSAKL----VEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGD 156 (462)
Q Consensus 81 LR~ll~~~~~iv~p~ayDalSArl----~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD 156 (462)
|++..+.+-.+.+.|+||.-+++. +|+.+-++|+..+-.... .. +++.+...++.+++..++||.+=
T Consensus 9 l~~A~~~~yAV~AfN~~n~e~~~avi~AAe~~~sPvIlq~~~~~~~-~~--------~~~~~~~~~~~~a~~~~vPValH 79 (287)
T PF01116_consen 9 LKKAKEGGYAVPAFNVYNLETARAVIEAAEELNSPVILQISPSEVK-YM--------GLEYLAAMVKAAAEEASVPVALH 79 (287)
T ss_dssp HHHHHHHT-BEEEEE-SSHHHHHHHHHHHHHTTS-EEEEEEHHHHH-HH--------HHHHHHHHHHHHHHHSTSEEEEE
T ss_pred HHHHHHCCCeEEEEeeCCHHHHHHHHHHHHHhCCCEEEEcchhhhh-hh--------hHHHHHHHHHHHHHHcCCCEEee
Confidence 444444555688889999998864 466799988877644331 11 67788888999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCC----CeEEEEec-
Q 012478 157 GDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGS----DIVIVART- 231 (462)
Q Consensus 157 ~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~----d~vIiART- 231 (462)
.|+|.. ...+++.+++|...|.| |.. -.|.+|=+..-+.+++-++..|. ++=.++..
T Consensus 80 LDH~~~-----~e~i~~ai~~GftSVM~-DgS------------~l~~eeNi~~T~~vv~~ah~~gv~VEaElG~i~g~e 141 (287)
T PF01116_consen 80 LDHGKD-----FEDIKRAIDAGFTSVMI-DGS------------ALPFEENIAITREVVEYAHAYGVSVEAELGHIGGKE 141 (287)
T ss_dssp EEEE-S-----HHHHHHHHHHTSSEEEE-E-T------------TS-HHHHHHHHHHHHHHHHHTT-EEEEEESBSSSSC
T ss_pred cccCCC-----HHHHHHHHHhCcccccc-cCC------------cCCHHHHHHHHHHHHHhhhhhCCEEEEEeeeeeccC
Confidence 999964 55666777889999999 543 24667777777777766664431 11011221
Q ss_pred chhhc--------ccHHHHHHHHHHh-HhcCCcEEEec-----C------CC--CHHHHHHHHHhCCCCceeeeeeecCC
Q 012478 232 DSRQA--------LSLEESLRRSRAF-ADAGADVLFID-----A------LA--SKEEMKAFCEISPLVPKMANMLEGGG 289 (462)
Q Consensus 232 DA~~~--------~gldeAI~RakAy-~eAGAD~Ifie-----~------~~--s~eei~~i~~~v~~vP~~~N~l~~~g 289 (462)
|.... .+.+ .|+.| .+.|+|++-+- | .+ +.+.+++|.+.++.+|+ ++.|+.
T Consensus 142 d~~~~~~~~~~~~TdP~----~a~~Fv~~TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~~~iPL---VlHGgS 214 (287)
T PF01116_consen 142 DGIESEEETESLYTDPE----EAKEFVEETGVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAVPDIPL---VLHGGS 214 (287)
T ss_dssp TTCSSSTT-TTCSSSHH----HHHHHHHHHTTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHHHTSEE---EESSCT
T ss_pred CCccccccccccccCHH----HHHHHHHHhCCCEEEEecCccccccCCCCCcccCHHHHHHHHHhcCCCCE---EEECCC
Confidence 11100 1334 45556 48999998652 1 12 36788888888833665 355543
Q ss_pred CCCCCCHHHHHhcCCCEEeccchHHHHHHHHHHHHHH
Q 012478 290 KTPILNPLELEELGFKLVAYPLSLIGVSVRAMQDALT 326 (462)
Q Consensus 290 ~tP~ls~~eL~~lGv~~V~yp~~ll~aa~~Am~~~l~ 326 (462)
..|.-...+.-++|++-|-+...+..+.+.++++.+.
T Consensus 215 G~~~e~~~~ai~~Gi~KiNi~T~~~~a~~~~~~~~~~ 251 (287)
T PF01116_consen 215 GLPDEQIRKAIKNGISKINIGTELRRAFTDALREYLA 251 (287)
T ss_dssp TS-HHHHHHHHHTTEEEEEESHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCceEEEEehHHHHHHHHHHHHHHH
Confidence 3343344556678999999999999999988887755
No 83
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=97.07 E-value=0.06 Score=55.27 Aligned_cols=182 Identities=16% Similarity=0.118 Sum_probs=109.1
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCH
Q 012478 125 LALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSR 204 (462)
Q Consensus 125 lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ 204 (462)
.|++. ...+++++..+.+.+..++||++-+ .| .+.....+.++.++++|+++|.|-=...|.+.+.. |.. +.
T Consensus 79 ~gl~n---~g~d~~~~~i~~~~~~~~~pvi~sI-~g-~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~-g~~--~~ 150 (334)
T PRK07565 79 PAKFY---VGPEEYLELIRRAKEAVDIPVIASL-NG-SSAGGWVDYARQIEQAGADALELNIYYLPTDPDIS-GAE--VE 150 (334)
T ss_pred hhccC---cCHHHHHHHHHHHHHhcCCcEEEEe-cc-CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCc-ccc--HH
Confidence 35554 5588889888888777789999998 33 24567778889999999999998543222211111 111 12
Q ss_pred HHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEecCCC-----CH--------------
Q 012478 205 EEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALA-----SK-------------- 265 (462)
Q Consensus 205 ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~~~-----s~-------------- 265 (462)
+.+.+-|++++++. ++-|+.+.-. .+++..+-++++.++|||+|.+.... +.
T Consensus 151 ~~~~eil~~v~~~~-----~iPV~vKl~p----~~~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~ 221 (334)
T PRK07565 151 QRYLDILRAVKSAV-----SIPVAVKLSP----YFSNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTP 221 (334)
T ss_pred HHHHHHHHHHHhcc-----CCcEEEEeCC----CchhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCc
Confidence 22444455554442 2334444211 23455666888899999999775321 11
Q ss_pred -------HHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcCCCEEeccchHHHHHHHHHHHHHHHH
Q 012478 266 -------EEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVSVRAMQDALTAI 328 (462)
Q Consensus 266 -------eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~ll~aa~~Am~~~l~~l 328 (462)
+.+.++.+.+. +|+..+ ||-.-..+..|.-.+|...|-.+..++.-....+++..+.|
T Consensus 222 ~~~~~al~~v~~~~~~~~-ipIig~----GGI~s~~Da~e~l~aGA~~V~v~t~~~~~g~~~~~~i~~~L 286 (334)
T PRK07565 222 AELRLPLRWIAILSGRVG-ADLAAT----TGVHDAEDVIKMLLAGADVVMIASALLRHGPDYIGTILRGL 286 (334)
T ss_pred hhhhHHHHHHHHHHhhcC-CCEEEE----CCCCCHHHHHHHHHcCCCceeeehHHhhhCcHHHHHHHHHH
Confidence 22334444443 565433 45443445667777999999999888875445555554444
No 84
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=97.06 E-value=0.022 Score=56.89 Aligned_cols=167 Identities=22% Similarity=0.182 Sum_probs=99.3
Q ss_pred hHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCC-CHHHHHHHHHHHHHh
Q 012478 99 ALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYG-NAMNVKRTVKGYIKA 177 (462)
Q Consensus 99 alSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG-~~~nv~rtVk~l~~A 177 (462)
.--|+..+++|+++|.+ +.-|+.-.=+ ++..+.|++.+++||+. -| |- ++. .+....++
T Consensus 73 ~~~A~~~~~~GA~aisv---------lte~~~f~g~----~~~l~~v~~~v~iPvl~-kd--fi~~~~----qi~~a~~~ 132 (260)
T PRK00278 73 VEIAKAYEAGGAACLSV---------LTDERFFQGS----LEYLRAARAAVSLPVLR-KD--FIIDPY----QIYEARAA 132 (260)
T ss_pred HHHHHHHHhCCCeEEEE---------ecccccCCCC----HHHHHHHHHhcCCCEEe-ee--ecCCHH----HHHHHHHc
Confidence 45678888899999844 2222221112 35556677778999997 23 43 333 35677789
Q ss_pred CccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEE
Q 012478 178 GFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVL 257 (462)
Q Consensus 178 GaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~I 257 (462)
||++|++-... .+.+ .++...+..+.+|-..++=-.+ .+|+ +...++|||.|
T Consensus 133 GAD~VlLi~~~-------------l~~~----~l~~li~~a~~lGl~~lvevh~-------~~E~----~~A~~~gadiI 184 (260)
T PRK00278 133 GADAILLIVAA-------------LDDE----QLKELLDYAHSLGLDVLVEVHD-------EEEL----ERALKLGAPLI 184 (260)
T ss_pred CCCEEEEEecc-------------CCHH----HHHHHHHHHHHcCCeEEEEeCC-------HHHH----HHHHHcCCCEE
Confidence 99999994432 1222 4444444455444333333222 2333 33558899999
Q ss_pred EecCC------CCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcCCCEEeccchHHHH
Q 012478 258 FIDAL------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGV 316 (462)
Q Consensus 258 fie~~------~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~ll~a 316 (462)
-+... .+.+...++.+.+|. ...-+.++|..+| -...++.++|+.-|+.+..++++
T Consensus 185 gin~rdl~~~~~d~~~~~~l~~~~p~--~~~vIaegGI~t~-ed~~~~~~~Gad~vlVGsaI~~~ 246 (260)
T PRK00278 185 GINNRNLKTFEVDLETTERLAPLIPS--DRLVVSESGIFTP-EDLKRLAKAGADAVLVGESLMRA 246 (260)
T ss_pred EECCCCcccccCCHHHHHHHHHhCCC--CCEEEEEeCCCCH-HHHHHHHHcCCCEEEECHHHcCC
Confidence 88751 345666777776642 1122335544333 24567888999999999987764
No 85
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=97.05 E-value=0.018 Score=55.61 Aligned_cols=172 Identities=15% Similarity=0.208 Sum_probs=100.5
Q ss_pred ChH-HHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHH
Q 012478 98 DAL-SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIK 176 (462)
Q Consensus 98 Dal-SArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~ 176 (462)
|+. .|+..++.|++.+++.-..-. ..+.+ . ..+..+.+++.+++||+++.. ..+...+ +.+.+
T Consensus 31 dp~~~a~~~~~~g~~~i~i~dl~~~--~~~~~----~----n~~~~~~i~~~~~~pv~~~gg--i~~~~d~----~~~~~ 94 (232)
T TIGR03572 31 DPVNAARIYNAKGADELIVLDIDAS--KRGRE----P----LFELISNLAEECFMPLTVGGG--IRSLEDA----KKLLS 94 (232)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCCc--ccCCC----C----CHHHHHHHHHhCCCCEEEECC--CCCHHHH----HHHHH
Confidence 444 357778899999988754321 11111 1 134566777778999998632 2233333 34567
Q ss_pred hCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhh---------------cccHHH
Q 012478 177 AGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQ---------------ALSLEE 241 (462)
Q Consensus 177 AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~---------------~~glde 241 (462)
+|+.+|.+--.. +-.+ +++.++ .+. .+... |+.-.|... .....+
T Consensus 95 ~G~~~vilg~~~------------l~~~-~~~~~~---~~~---~~~~~-i~vsld~~~~~~~~~~~v~~~~~~~~~~~~ 154 (232)
T TIGR03572 95 LGADKVSINTAA------------LENP-DLIEEA---ARR---FGSQC-VVVSIDVKKELDGSDYKVYSDNGRRATGRD 154 (232)
T ss_pred cCCCEEEEChhH------------hcCH-HHHHHH---HHH---cCCce-EEEEEEeccCCCCCcEEEEECCCcccCCCC
Confidence 899999773221 1122 233333 222 12222 222222211 011234
Q ss_pred HHHHHHHhHhcCCcEEEecCCCC--------HHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHH----HHhcCCCEEec
Q 012478 242 SLRRSRAFADAGADVLFIDALAS--------KEEMKAFCEISPLVPKMANMLEGGGKTPILNPLE----LEELGFKLVAY 309 (462)
Q Consensus 242 AI~RakAy~eAGAD~Ifie~~~s--------~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~e----L~~lGv~~V~y 309 (462)
.++-++.+.++|||.|.+.++.. .+.++++++.++ +|+.++ ||- -+.++ |.+.|+..|+.
T Consensus 155 ~~~~~~~~~~~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~~~~-ipvia~----GGi---~s~~di~~~l~~~gadgV~v 226 (232)
T TIGR03572 155 PVEWAREAEQLGAGEILLNSIDRDGTMKGYDLELIKTVSDAVS-IPVIAL----GGA---GSLDDLVEVALEAGASAVAA 226 (232)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCccCCcCCCCHHHHHHHHhhCC-CCEEEE----CCC---CCHHHHHHHHHHcCCCEEEE
Confidence 67889999999999999987532 578888888765 565543 342 25555 78899999998
Q ss_pred cchH
Q 012478 310 PLSL 313 (462)
Q Consensus 310 p~~l 313 (462)
+..+
T Consensus 227 g~a~ 230 (232)
T TIGR03572 227 ASLF 230 (232)
T ss_pred ehhh
Confidence 7654
No 86
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=97.03 E-value=0.29 Score=50.49 Aligned_cols=218 Identities=14% Similarity=0.122 Sum_probs=140.3
Q ss_pred HHHHHHHHhCCCceEecccCChHHHHH----HHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcC-Cc
Q 012478 78 AKSLRQILELPGVHQGPACFDALSAKL----VEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVS-IP 152 (462)
Q Consensus 78 a~~LR~ll~~~~~iv~p~ayDalSArl----~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~-iP 152 (462)
.+-|....+.+-.+-+.|+||.-+++. +|+.+-+.|+..+-+.. . ...++.+...++.+++..+ +|
T Consensus 6 k~lL~~A~~~~yaV~AfN~~n~e~~~avi~AAe~~~sPvIlq~s~~~~----~-----~~g~~~~~~~~~~~a~~~~~VP 76 (307)
T PRK05835 6 NEILLKAHKEGYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEGAI----K-----YMGIDMAVGMVKIMCERYPHIP 76 (307)
T ss_pred HHHHHHHHHCCceEEEEEECCHHHHHHHHHHHHHHCCCEEEEcCccHH----h-----hCChHHHHHHHHHHHHhcCCCe
Confidence 344566666666688899999998865 45668898887653321 1 2335567777788887775 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCC----CeEEE
Q 012478 153 VIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGS----DIVIV 228 (462)
Q Consensus 153 VIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~----d~vIi 228 (462)
|.+=.|+|. + .+.+++.+++|...|.+ |.. | .|.||=+++-+.+++-++..|. ++=.+
T Consensus 77 ValHLDHg~-~----~e~i~~ai~~GftSVM~-DgS------~------l~~eeNi~~T~~vve~Ah~~gv~VEaElG~v 138 (307)
T PRK05835 77 VALHLDHGT-T----FESCEKAVKAGFTSVMI-DAS------H------HAFEENLELTSKVVKMAHNAGVSVEAELGRL 138 (307)
T ss_pred EEEECCCCC-C----HHHHHHHHHcCCCEEEE-eCC------C------CCHHHHHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 999999995 3 44566778899999999 442 3 4567777777777766653321 11111
Q ss_pred Eec-chhhcccHH---HHHHHHHHhHh-cCCcEEEe-----cCC--------CCHHHHHHHHHhCCCCceeeeeeecCCC
Q 012478 229 ART-DSRQALSLE---ESLRRSRAFAD-AGADVLFI-----DAL--------ASKEEMKAFCEISPLVPKMANMLEGGGK 290 (462)
Q Consensus 229 ART-DA~~~~gld---eAI~RakAy~e-AGAD~Ifi-----e~~--------~s~eei~~i~~~v~~vP~~~N~l~~~g~ 290 (462)
+-. |......-+ --.+.|+.|.+ .|+|++-+ ++. -+.+.+++|.+.++ +|+ ++.|+..
T Consensus 139 gg~ed~~~~~~~~~~~TdPeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~~-iPL---VLHGgSG 214 (307)
T PRK05835 139 MGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLTN-IPL---VLHGASA 214 (307)
T ss_pred CCccCCcccccccccCCCHHHHHHHHHhhCCCEEEEccCccccccCCCCCCccCHHHHHHHHHHhC-CCE---EEeCCCC
Confidence 111 110000000 01345677774 69998754 222 13578888888775 675 5666444
Q ss_pred CCCC---------------------CHHHHHhcCCCEEeccchHHHHHHHHHHHHHH
Q 012478 291 TPIL---------------------NPLELEELGFKLVAYPLSLIGVSVRAMQDALT 326 (462)
Q Consensus 291 tP~l---------------------s~~eL~~lGv~~V~yp~~ll~aa~~Am~~~l~ 326 (462)
.|.- ...+.-++|++-|-+..-+..+...++++.+.
T Consensus 215 ip~e~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KiNi~T~l~~a~~~~~~~~~~ 271 (307)
T PRK05835 215 IPDDVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDTDLRIAFIAEVRKVAN 271 (307)
T ss_pred CchHHhhhhhhhccccccccCCCHHHHHHHHHcCceEEEeChHHHHHHHHHHHHHHH
Confidence 4532 33445678999999999999999999988864
No 87
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=97.01 E-value=0.047 Score=54.01 Aligned_cols=200 Identities=13% Similarity=0.084 Sum_probs=120.6
Q ss_pred ccCChHHHHHHHHhCCcEEEeccHHHH-----hh----hccC----CCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCC
Q 012478 95 ACFDALSAKLVEKSGFSFCFTSGFSIS-----AA----RLAL----PDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGY 161 (462)
Q Consensus 95 ~ayDalSArl~e~aGfdaI~vSG~avS-----as----~lG~----PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGy 161 (462)
|.-|+-.++-... .|..++++|+.+= |+ ..|- +|... +.+.+-.....+. ...|+++-+ |+
T Consensus 3 g~~d~~~~~~~~~-~~~~~~lgg~~~d~~t~~a~~~~~~rgr~ef~~~~e~-~~~~i~~e~~~~~--~~~~vivnv--~~ 76 (231)
T TIGR00736 3 GITDAEFCRKFKD-LFAIVTLGGYNADRATYKASRDIEKRGRKEFSFNLEE-FNSYIIEQIKKAE--SRALVSVNV--RF 76 (231)
T ss_pred CcchHHHHHhcCc-CcCEEEECCccCCHHHHHHHHHHHHcCCcccCcCccc-HHHHHHHHHHHHh--hcCCEEEEE--ec
Confidence 4445555544332 4778888876531 11 1243 33222 2233333344442 357999875 44
Q ss_pred CCHHHHHHHHHHHHHhCccEEEeCCCC-CCCCCCCCCCCccc-CHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccH
Q 012478 162 GNAMNVKRTVKGYIKAGFAGIILEDQV-SPKGCGHTRGRKVV-SREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSL 239 (462)
Q Consensus 162 G~~~nv~rtVk~l~~AGaaGI~IEDq~-~PKrCGH~~gk~Lv-p~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gl 239 (462)
.+++...+.++.+.+ ++++|-|-=.. .||.|.+-.|..|. +++.+.+-+++++. .+.++.+--|..- .-
T Consensus 77 ~~~ee~~~~a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~----~~~PVsvKiR~~~----~~ 147 (231)
T TIGR00736 77 VDLEEAYDVLLTIAE-HADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKE----LNKPIFVKIRGNC----IP 147 (231)
T ss_pred CCHHHHHHHHHHHhc-CCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHc----CCCcEEEEeCCCC----Cc
Confidence 577888888877765 89999886664 24455444455444 56655555555552 2456777777542 11
Q ss_pred HHHHHHHHHhHhcCCcEEEecCCC------CHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcCCCEEeccchH
Q 012478 240 EESLRRSRAFADAGADVLFIDALA------SKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSL 313 (462)
Q Consensus 240 deAI~RakAy~eAGAD~Ifie~~~------s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~l 313 (462)
++.++-+++.+++|||.|-|+... +.+.++++.+.++.+|+..| |+-.-.=+..|..+.|...|..+-.+
T Consensus 148 ~~~~~~a~~l~~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~ipIIgN----GgI~s~eda~e~l~~GAd~VmvgR~~ 223 (231)
T TIGR00736 148 LDELIDALNLVDDGFDGIHVDAMYPGKPYADMDLLKILSEEFNDKIIIGN----NSIDDIESAKEMLKAGADFVSVARAI 223 (231)
T ss_pred chHHHHHHHHHHcCCCEEEEeeCCCCCchhhHHHHHHHHHhcCCCcEEEE----CCcCCHHHHHHHHHhCCCeEEEcHhh
Confidence 356788999999999999998653 35678888888754677655 34322224455666788888776543
No 88
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=96.99 E-value=0.041 Score=56.48 Aligned_cols=201 Identities=14% Similarity=0.116 Sum_probs=118.4
Q ss_pred ceEec--ccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHH--hhcCCcEEEeCCCCCC-CH
Q 012478 90 VHQGP--ACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLIT--QAVSIPVIGDGDNGYG-NA 164 (462)
Q Consensus 90 ~iv~p--~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~--ra~~iPVIaD~DtGyG-~~ 164 (462)
.+.+| |+=|...-+++.+.|.+..|+-- +++..+-+. .+ ..+... .....|+++-+ +| ++
T Consensus 12 ~~lAPM~g~td~~fR~l~~~~g~~~~~tem--vs~~~~~~~-------~~---~~~~~~~~~~~~~~~~vQl---~g~~~ 76 (321)
T PRK10415 12 LIAAPMAGITDRPFRTLCYEMGAGLTVSEM--MSSNPQVWE-------SD---KSRLRMVHIDEPGIRTVQI---AGSDP 76 (321)
T ss_pred EEecCCCCCCcHHHHHHHHHHCCCEEEEcc--EEcchhhhc-------CH---hHHHHhccCccCCCEEEEE---eCCCH
Confidence 44555 89999999999999998766431 111001010 01 011111 11135666554 55 57
Q ss_pred HHHHHHHHHHHHhCccEEEeCCCCC-CCCCCCCCCCccc-CHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHH
Q 012478 165 MNVKRTVKGYIKAGFAGIILEDQVS-PKGCGHTRGRKVV-SREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (462)
Q Consensus 165 ~nv~rtVk~l~~AGaaGI~IEDq~~-PKrCGH~~gk~Lv-p~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeA 242 (462)
....++++.+.+.|+++|-|-=+.. +|.+.+..|-.+. .++...+-+++++++. +..+.+.-|..-. ...+++
T Consensus 77 ~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~---d~pv~vKiR~G~~--~~~~~~ 151 (321)
T PRK10415 77 KEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAV---DVPVTLKIRTGWA--PEHRNC 151 (321)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhc---CCceEEEEEcccc--CCcchH
Confidence 7888899888889999999977752 3444444454444 3444444444444442 2334444443211 122467
Q ss_pred HHHHHHhHhcCCcEEEecCC---------CCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHh-cCCCEEeccch
Q 012478 243 LRRSRAFADAGADVLFIDAL---------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEE-LGFKLVAYPLS 312 (462)
Q Consensus 243 I~RakAy~eAGAD~Ifie~~---------~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~-lGv~~V~yp~~ 312 (462)
++-++.+.++|+|.|.+++. .+.+.++++.+.++ +|+..| |+-.-.-+.+++.+ .|+..|.++-.
T Consensus 152 ~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~-iPVI~n----GgI~s~~da~~~l~~~gadgVmiGR~ 226 (321)
T PRK10415 152 VEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVS-IPVIAN----GDITDPLKARAVLDYTGADALMIGRA 226 (321)
T ss_pred HHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhcC-CcEEEe----CCCCCHHHHHHHHhccCCCEEEEChH
Confidence 78888999999999998864 23566777777775 677655 33221123355554 69999999877
Q ss_pred HHH
Q 012478 313 LIG 315 (462)
Q Consensus 313 ll~ 315 (462)
++.
T Consensus 227 ~l~ 229 (321)
T PRK10415 227 AQG 229 (321)
T ss_pred hhc
Confidence 664
No 89
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=96.98 E-value=0.023 Score=59.48 Aligned_cols=155 Identities=15% Similarity=0.149 Sum_probs=109.9
Q ss_pred Cceeeccccc-CCCccccccCchHHHHHHHHhCCCceEecccCChHHHHHHHHhCCcEEEeccHHHHh-------hhccC
Q 012478 56 GTINRTRVYR-KNSTGVEACLSPAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISA-------ARLAL 127 (462)
Q Consensus 56 r~~~~~R~y~-rgs~~~~~a~~~a~~LR~ll~~~~~iv~p~ayDalSArl~e~aGfdaI~vSG~avSa-------s~lG~ 127 (462)
-|+.++.||+ ||- ....-+.|++..++-+..++-.+||.-++..+.+. .|++.++|.-+.. +..|.
T Consensus 153 ~~kpRtsp~~f~g~-----~~e~l~~L~~~~~~~Gl~~~t~v~d~~~~~~l~~~-vd~lkI~s~~~~n~~LL~~~a~~gk 226 (360)
T PRK12595 153 AFKPRTSPYDFQGL-----GVEGLKILKQVADEYGLAVISEIVNPADVEVALDY-VDVIQIGARNMQNFELLKAAGRVNK 226 (360)
T ss_pred ccCCCCCCccccCC-----CHHHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHHh-CCeEEECcccccCHHHHHHHHccCC
Confidence 4556667775 221 23345567777777788888899999999999999 9999999866543 23466
Q ss_pred CC---CCC-CCHHHHHHHHHHHHh----------------------------------hcCCcEEEeCCCCCCCHHHHHH
Q 012478 128 PD---TGF-ISYGEMVDQGQLITQ----------------------------------AVSIPVIGDGDNGYGNAMNVKR 169 (462)
Q Consensus 128 PD---~g~-vsl~Eml~~~~~I~r----------------------------------a~~iPVIaD~DtGyG~~~nv~r 169 (462)
|= +|. .+++|+...+..|.. ..++||++|.++.-|....+..
T Consensus 227 PVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~erg~s~yp~~~~~~ldl~~i~~lk~~~~~PV~~d~~Hs~G~r~~~~~ 306 (360)
T PRK12595 227 PVLLKRGLSATIEEFIYAAEYIMSQGNGQIILCERGIRTYEKATRNTLDISAVPILKQETHLPVMVDVTHSTGRRDLLLP 306 (360)
T ss_pred cEEEeCCCCCCHHHHHHHHHHHHHCCCCCEEEECCccCCCCCCCCCCcCHHHHHHHHHHhCCCEEEeCCCCCcchhhHHH
Confidence 64 455 689999888777742 1468999999987676555655
Q ss_pred HHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHH
Q 012478 170 TVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDA 217 (462)
Q Consensus 170 tVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~A 217 (462)
..+..+.+||+|+.||=-..|.+-| .+++.-++++++..-++.++.-
T Consensus 307 ~a~aAva~GAdg~~iE~H~dp~~a~-~D~~~sl~p~el~~l~~~i~~~ 353 (360)
T PRK12595 307 TAKAALAIGADGVMAEVHPDPAVAL-SDSAQQMDIPEFDRFLDELKPL 353 (360)
T ss_pred HHHHHHHcCCCeEEEEecCCCCCCC-CchhhhCCHHHHHHHHHHHHHH
Confidence 6667778999999999766554444 3556667777766655555443
No 90
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=96.96 E-value=0.053 Score=55.69 Aligned_cols=178 Identities=17% Similarity=0.136 Sum_probs=103.7
Q ss_pred CCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHH
Q 012478 133 ISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIK 212 (462)
Q Consensus 133 vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~ 212 (462)
..++.+++..+...+..+.||++-. +| .+.....+.++.++++|+++|.|-=...|.+-+ ..|..+ .+...+-++
T Consensus 82 ~g~~~~~~~i~~~~~~~~~pvi~si-~g-~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~-~~g~~~--~~~~~eiv~ 156 (325)
T cd04739 82 LGPEEYLELIRRAKRAVSIPVIASL-NG-VSAGGWVDYARQIEEAGADALELNIYALPTDPD-ISGAEV--EQRYLDILR 156 (325)
T ss_pred cCHHHHHHHHHHHHhccCCeEEEEe-CC-CCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCC-cccchH--HHHHHHHHH
Confidence 3467777777766555579999998 44 245677888999999999999885542111111 111111 122334444
Q ss_pred HHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEecCCC-----C---------------------HH
Q 012478 213 AAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALA-----S---------------------KE 266 (462)
Q Consensus 213 AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~~~-----s---------------------~e 266 (462)
+++++. +.++++-=+- .+++..+-+++..++|||+|.+.... + .+
T Consensus 157 ~v~~~~---~iPv~vKl~p------~~~~~~~~a~~l~~~Gadgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~ 227 (325)
T cd04739 157 AVKSAV---TIPVAVKLSP------FFSALAHMAKQLDAAGADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLR 227 (325)
T ss_pred HHHhcc---CCCEEEEcCC------CccCHHHHHHHHHHcCCCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHH
Confidence 444442 2333333221 23456667788889999999876521 1 12
Q ss_pred HHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcCCCEEeccchHHHHHHHHHHHHHHHHH
Q 012478 267 EMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVSVRAMQDALTAIK 329 (462)
Q Consensus 267 ei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~ll~aa~~Am~~~l~~l~ 329 (462)
.+.++.+.+. +|+..+ ||-.-.-+..|.-.+|...|-.+..++......+.+..+.|.
T Consensus 228 ~v~~v~~~~~-ipIig~----GGI~s~~Da~e~l~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~ 285 (325)
T cd04739 228 WIAILSGRVK-ASLAAS----GGVHDAEDVVKYLLAGADVVMTTSALLRHGPDYIGTLLAGLE 285 (325)
T ss_pred HHHHHHcccC-CCEEEE----CCCCCHHHHHHHHHcCCCeeEEehhhhhcCchHHHHHHHHHH
Confidence 2344444443 555432 443333355566669999999998887755555555555553
No 91
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=96.92 E-value=0.093 Score=52.53 Aligned_cols=156 Identities=16% Similarity=0.112 Sum_probs=87.7
Q ss_pred hHHHHHHHHhCCcEEEec-cHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHHh
Q 012478 99 ALSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKA 177 (462)
Q Consensus 99 alSArl~e~aGfdaI~vS-G~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~A 177 (462)
.-.|+.++++|||+|=+- +.-.. -+.=+.-.-+.+.+.+.+++|.+.+++||++-+--. ..+..+.++.++++
T Consensus 105 ~~~a~~~~~~G~d~iElN~~cP~~---~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~~---~~~~~~~a~~~~~~ 178 (296)
T cd04740 105 VEVAEKLADAGADAIELNISCPNV---KGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTPN---VTDIVEIARAAEEA 178 (296)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCC---CCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCCC---chhHHHHHHHHHHc
Confidence 445677888999999775 21211 111011113456667778888888899999987432 23567778889999
Q ss_pred CccEEEeCCCCC----------C---CCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHH
Q 012478 178 GFAGIILEDQVS----------P---KGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLR 244 (462)
Q Consensus 178 GaaGI~IEDq~~----------P---KrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~ 244 (462)
|+++|.+-.... | ..+|...|..+.|. ...-|+.++++ .+.+++.++.... -+
T Consensus 179 G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~--~~~~i~~i~~~---~~ipii~~GGI~~---------~~ 244 (296)
T cd04740 179 GADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPI--ALRMVYQVYKA---VEIPIIGVGGIAS---------GE 244 (296)
T ss_pred CCCEEEEECCCcccccccccCceeecCCcceecCcccchH--HHHHHHHHHHh---cCCCEEEECCCCC---------HH
Confidence 999998743211 1 01233344444443 12233333322 2234444444322 13
Q ss_pred HHHHhHhcCCcEEEecC--CCCHHHHHHHHHh
Q 012478 245 RSRAFADAGADVLFIDA--LASKEEMKAFCEI 274 (462)
Q Consensus 245 RakAy~eAGAD~Ifie~--~~s~eei~~i~~~ 274 (462)
.+..+.++|||+|.+-. +.++..+.++.+.
T Consensus 245 da~~~l~~GAd~V~igra~l~~p~~~~~i~~~ 276 (296)
T cd04740 245 DALEFLMAGASAVQVGTANFVDPEAFKEIIEG 276 (296)
T ss_pred HHHHHHHcCCCEEEEchhhhcChHHHHHHHHH
Confidence 56667789999998732 2355555555544
No 92
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=96.88 E-value=0.031 Score=57.64 Aligned_cols=210 Identities=21% Similarity=0.141 Sum_probs=129.4
Q ss_pred CCCceEec--ccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCH
Q 012478 87 LPGVHQGP--ACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNA 164 (462)
Q Consensus 87 ~~~~iv~p--~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~ 164 (462)
.+..+++| |.-|...=+++.+.|...++.|=...+ -.+-+++-..+..-... ....|+++=+ +-+++
T Consensus 10 ~~~~~lAPM~gvtd~~fR~l~~~~ga~~~~~TEmv~~-~~~~~~~~~~~~~~~~~--------~~e~p~~vQl--~gsdp 78 (323)
T COG0042 10 RNRVILAPMAGVTDLPFRRLARELGAYDLLYTEMVSA-KALLHGRKKFLLLLDEL--------EEERPVAVQL--GGSDP 78 (323)
T ss_pred cCcEEEecCCCCccHHHHHHHHHhCCCceEEEccEEE-hhhccCCcchhhhcCcC--------CCCCCEEEEe--cCCCH
Confidence 34556655 889999999998877733333421111 11222222111100000 1235655543 22368
Q ss_pred HHHHHHHHHHHHhCccEEEeCCCC-CCCCCCCCCCCccc-CHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHH
Q 012478 165 MNVKRTVKGYIKAGFAGIILEDQV-SPKGCGHTRGRKVV-SREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (462)
Q Consensus 165 ~nv~rtVk~l~~AGaaGI~IEDq~-~PKrCGH~~gk~Lv-p~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeA 242 (462)
....++++...+.|+++|.|-=+. .||.+.+..|-.|. .++.+.+-|+|++++.. ..+.-|--|+--...+ -.+
T Consensus 79 ~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~--~iPVTVKiRlG~d~~~--~~~ 154 (323)
T COG0042 79 ELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVG--DIPVTVKIRLGWDDDD--ILA 154 (323)
T ss_pred HHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhC--CCCeEEEEecccCccc--ccH
Confidence 889999999999999999998887 46777766666654 66666666777776652 1356666664321111 136
Q ss_pred HHHHHHhHhcCCcEEEecCCC---------CHHHHHHHHHhCCCCceeeeeeecCC-CCCCCCHHHHHhcCCCEEeccch
Q 012478 243 LRRSRAFADAGADVLFIDALA---------SKEEMKAFCEISPLVPKMANMLEGGG-KTPILNPLELEELGFKLVAYPLS 312 (462)
Q Consensus 243 I~RakAy~eAGAD~Ifie~~~---------s~eei~~i~~~v~~vP~~~N~l~~~g-~tP~ls~~eL~~lGv~~V~yp~~ 312 (462)
.+=+++..++||+++.||+-+ +-+.+.++.+.++.+|+..| |+ +++.--.+-|+.-|+.-|..+-.
T Consensus 155 ~~ia~~~~~~g~~~ltVHgRtr~~~y~~~ad~~~I~~vk~~~~~ipvi~N----GdI~s~~~a~~~l~~tg~DgVMigRg 230 (323)
T COG0042 155 LEIARILEDAGADALTVHGRTRAQGYLGPADWDYIKELKEAVPSIPVIAN----GDIKSLEDAKEMLEYTGADGVMIGRG 230 (323)
T ss_pred HHHHHHHHhcCCCEEEEecccHHhcCCCccCHHHHHHHHHhCCCCeEEeC----CCcCCHHHHHHHHHhhCCCEEEEcHH
Confidence 677899999999999999864 67788899888876677766 22 22221223366678888877655
Q ss_pred HHH
Q 012478 313 LIG 315 (462)
Q Consensus 313 ll~ 315 (462)
.+.
T Consensus 231 a~~ 233 (323)
T COG0042 231 ALG 233 (323)
T ss_pred Hcc
Confidence 443
No 93
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=96.86 E-value=0.016 Score=58.18 Aligned_cols=167 Identities=19% Similarity=0.215 Sum_probs=106.1
Q ss_pred CCCccceeecceeeeeccchhh--hhhcccC------CCCceeecccccCCCccccccCchHHHHHHHHhCCCceEec-c
Q 012478 25 RPSSFLGINNNTISFNKTNTNT--LLLNTAT------NPGTINRTRVYRKNSTGVEACLSPAKSLRQILELPGVHQGP-A 95 (462)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~------~Pr~~~~~R~y~rgs~~~~~a~~~a~~LR~ll~~~~~iv~p-~ 95 (462)
++...-+.+|-+=-.+-+.+-. .+.+... .-.|-.+.-.--.-.+-++. ...-+.=+.|. +.++.++| +
T Consensus 67 ~~~~~~~LPNTaGc~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi~D~~~LlPD~-~etl~Aae~Lv-~eGF~VlPY~ 144 (267)
T CHL00162 67 DWNKLWLLPNTAGCQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVISDPKYLLPDP-IGTLKAAEFLV-KKGFTVLPYI 144 (267)
T ss_pred chhccEECCcCcCCCCHHHHHHHHHHHHHHhccccccCCCeEEEEEeCCCcccCCCh-HHHHHHHHHHH-HCCCEEeecC
Confidence 3455666677654443333221 1223333 45676665443222222321 11122333444 45577777 7
Q ss_pred cCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHH
Q 012478 96 CFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYI 175 (462)
Q Consensus 96 ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~ 175 (462)
.-|...|+-++++|+.+|.--|.-+. |-+|+.+ .+..+.|.+..++|||+| .|-|.+.++++ ..
T Consensus 145 ~~D~v~a~rLed~Gc~aVMPlgsPIG-Sg~Gl~n---------~~~l~~i~e~~~vpVivd--AGIgt~sDa~~----Am 208 (267)
T CHL00162 145 NADPMLAKHLEDIGCATVMPLGSPIG-SGQGLQN---------LLNLQIIIENAKIPVIID--AGIGTPSEASQ----AM 208 (267)
T ss_pred CCCHHHHHHHHHcCCeEEeeccCccc-CCCCCCC---------HHHHHHHHHcCCCcEEEe--CCcCCHHHHHH----HH
Confidence 77999999999999999988776664 4567654 245677888888999999 67778877774 44
Q ss_pred HhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHH
Q 012478 176 KAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARK 219 (462)
Q Consensus 176 ~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~ 219 (462)
+.|++||-+--... +. -++.+|+.-++.|++|.+
T Consensus 209 ElGaDgVL~nSaIa--kA--------~dP~~mA~a~~~AV~AGR 242 (267)
T CHL00162 209 ELGASGVLLNTAVA--QA--------KNPEQMAKAMKLAVQAGR 242 (267)
T ss_pred HcCCCEEeecceee--cC--------CCHHHHHHHHHHHHHHHH
Confidence 78999999866542 11 134789999999998876
No 94
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=96.86 E-value=0.18 Score=51.85 Aligned_cols=168 Identities=14% Similarity=0.112 Sum_probs=93.8
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEeCCCCCC------CHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCC-cccCHHH
Q 012478 134 SYGEMVDQGQLITQAVSIPVIGDGDNGYG------NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGR-KVVSREE 206 (462)
Q Consensus 134 sl~Eml~~~~~I~ra~~iPVIaD~DtGyG------~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk-~Lvp~ee 206 (462)
..+.+++..+.... .+.||++-+ .|.. ......+.++++.. +|++|-|.=. |-|..|. .....+.
T Consensus 113 g~~~~~~~l~~~~~-~~~plivsi-~g~~~~~~~~~~~d~~~~~~~~~~-~ad~ielN~s-----cP~~~g~~~~~~~~~ 184 (327)
T cd04738 113 GADAVAKRLKKRRP-RGGPLGVNI-GKNKDTPLEDAVEDYVIGVRKLGP-YADYLVVNVS-----SPNTPGLRDLQGKEA 184 (327)
T ss_pred cHHHHHHHHHHhcc-CCCeEEEEE-eCCCCCcccccHHHHHHHHHHHHh-hCCEEEEECC-----CCCCCccccccCHHH
Confidence 35666666655332 579999998 4432 12445555555543 4777766433 5454332 2445566
Q ss_pred HHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEecCCC-----------------------
Q 012478 207 AVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALA----------------------- 263 (462)
Q Consensus 207 ~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~~~----------------------- 263 (462)
+.+-+++++++...++.++-|..+.-.. ...++..+-+++..++|||.|.+....
T Consensus 185 ~~~iv~av~~~~~~~~~~~Pv~vKl~~~--~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~ 262 (327)
T cd04738 185 LRELLTAVKEERNKLGKKVPLLVKIAPD--LSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPL 262 (327)
T ss_pred HHHHHHHHHHHHhhcccCCCeEEEeCCC--CCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhh
Confidence 6666666666653222234445554221 234677788899999999999875421
Q ss_pred ---CHHHHHHHHHhCC-CCceeeeeeecCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 012478 264 ---SKEEMKAFCEISP-LVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (462)
Q Consensus 264 ---s~eei~~i~~~v~-~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~ll~ 315 (462)
..+.+.++.+.++ .+|+..+ ||-.-.-+..++-..|.+.|-.+..++.
T Consensus 263 ~~~~l~~v~~l~~~~~~~ipIi~~----GGI~t~~da~e~l~aGAd~V~vg~~~~~ 314 (327)
T cd04738 263 KERSTEVLRELYKLTGGKIPIIGV----GGISSGEDAYEKIRAGASLVQLYTGLVY 314 (327)
T ss_pred hHHHHHHHHHHHHHhCCCCcEEEE----CCCCCHHHHHHHHHcCCCHHhccHHHHh
Confidence 1345566666653 2454422 3432122345555678887777665544
No 95
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=96.85 E-value=0.025 Score=58.37 Aligned_cols=200 Identities=16% Similarity=0.049 Sum_probs=116.6
Q ss_pred ceEec--ccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHh-hcCCcEEEeCCCCCC-CHH
Q 012478 90 VHQGP--ACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQ-AVSIPVIGDGDNGYG-NAM 165 (462)
Q Consensus 90 ~iv~p--~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~r-a~~iPVIaD~DtGyG-~~~ 165 (462)
.+.+| |.=|...=+++.+.|...++.|-+-.+ .++--.. ...+ +.. ....|+++-+ +| ++.
T Consensus 13 ~~lAPM~g~td~~fR~~~~~~g~~~~~~temv~~---~~l~~~~---~~~~------l~~~~~e~p~~vQl---~g~~p~ 77 (333)
T PRK11815 13 FSVAPMMDWTDRHCRYFHRLLSRHALLYTEMVTT---GAIIHGD---RERL------LAFDPEEHPVALQL---GGSDPA 77 (333)
T ss_pred EEEeCCCCCcCHHHHHHHHHhCCCCEEEECCEEe---ccccccC---HHHH------hccCCCCCcEEEEE---eCCCHH
Confidence 44555 778888888888888744444432221 1111111 1111 111 2247888775 34 578
Q ss_pred HHHHHHHHHHHhCccEEEeCCCC-CCCCCCCCCCCccc-CHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHH
Q 012478 166 NVKRTVKGYIKAGFAGIILEDQV-SPKGCGHTRGRKVV-SREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESL 243 (462)
Q Consensus 166 nv~rtVk~l~~AGaaGI~IEDq~-~PKrCGH~~gk~Lv-p~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI 243 (462)
...++++.+.++|++||.|--+. .++.+....|-.+. .++...+-+++++++. +..+-+--|.-.......++++
T Consensus 78 ~~~~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v---~~pVsvKiR~g~~~~~t~~~~~ 154 (333)
T PRK11815 78 DLAEAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAV---SIPVTVKHRIGIDDQDSYEFLC 154 (333)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHc---CCceEEEEEeeeCCCcCHHHHH
Confidence 88899999999999999997664 23333322233333 4444444445554432 2233332243211112356788
Q ss_pred HHHHHhHhcCCcEEEecCCC-----------------CHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHH---HHhcC
Q 012478 244 RRSRAFADAGADVLFIDALA-----------------SKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLE---LEELG 303 (462)
Q Consensus 244 ~RakAy~eAGAD~Ifie~~~-----------------s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~e---L~~lG 303 (462)
+-++.+.++|+|+|.+++-. +.+.++++.+.++.+|+..| ||- .+.++ +.+ |
T Consensus 155 ~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~~~~~~~~~~~~i~~v~~~~~~iPVI~n----GgI---~s~eda~~~l~-~ 226 (333)
T PRK11815 155 DFVDTVAEAGCDTFIVHARKAWLKGLSPKENREIPPLDYDRVYRLKRDFPHLTIEIN----GGI---KTLEEAKEHLQ-H 226 (333)
T ss_pred HHHHHHHHhCCCEEEEcCCchhhcCCCccccccCCCcCHHHHHHHHHhCCCCeEEEE----CCc---CCHHHHHHHHh-c
Confidence 89999999999999998532 25677788777655777655 332 24444 333 6
Q ss_pred CCEEeccchHHH
Q 012478 304 FKLVAYPLSLIG 315 (462)
Q Consensus 304 v~~V~yp~~ll~ 315 (462)
+..|..+-.++.
T Consensus 227 aDgVmIGRa~l~ 238 (333)
T PRK11815 227 VDGVMIGRAAYH 238 (333)
T ss_pred CCEEEEcHHHHh
Confidence 888888776654
No 96
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=96.81 E-value=0.81 Score=47.58 Aligned_cols=217 Identities=14% Similarity=0.140 Sum_probs=140.2
Q ss_pred HHHHHHHhCCCceEecccCChHHHHHH----HHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhc--CCc
Q 012478 79 KSLRQILELPGVHQGPACFDALSAKLV----EKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV--SIP 152 (462)
Q Consensus 79 ~~LR~ll~~~~~iv~p~ayDalSArl~----e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~--~iP 152 (462)
.-|....+.+-.+-+.|+|+.-+++.+ |+.+.+.|+..+-+.. .|. +.-.+..+...++..++.. ++|
T Consensus 14 ~lL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIlq~s~~~~----~~~--g~~~~~~~~~~~~~~a~~a~~~VP 87 (321)
T PRK07084 14 EMFAKAVKGGYAIPAYNFNNMEQLQAIIQACVETKSPVILQVSKGAR----KYA--NATLLRYMAQGAVEYAKELGCPIP 87 (321)
T ss_pred HHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEechhHH----hhC--CchHHHHHHHHHHHHHHHcCCCCc
Confidence 345555555556888899999998654 5668888887654321 221 1112455666777777755 799
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCC----CeEEE
Q 012478 153 VIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGS----DIVIV 228 (462)
Q Consensus 153 VIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~----d~vIi 228 (462)
|.+=.|+|. + .+.+++.+++|...|.| |.. | .|.+|=++.-+.+++.++..|. ++=-+
T Consensus 88 V~lHLDHg~-~----~e~i~~ai~~GftSVMi-D~S------~------lp~eeNI~~T~evv~~Ah~~GvsVEaElG~i 149 (321)
T PRK07084 88 IVLHLDHGD-S----FELCKDCIDSGFSSVMI-DGS------H------LPYEENVALTKKVVEYAHQFDVTVEGELGVL 149 (321)
T ss_pred EEEECCCCC-C----HHHHHHHHHcCCCEEEe-eCC------C------CCHHHHHHHHHHHHHHHHHcCCeEEEEEeee
Confidence 999999984 3 33567778899999999 442 3 3667777777777766654331 11111
Q ss_pred Ee-cchhh-----cccHHHHHHHHHHhHh-cCCcEEEe-----cCC-----------CCHHHHHHHHHhCCCCceeeeee
Q 012478 229 AR-TDSRQ-----ALSLEESLRRSRAFAD-AGADVLFI-----DAL-----------ASKEEMKAFCEISPLVPKMANML 285 (462)
Q Consensus 229 AR-TDA~~-----~~gldeAI~RakAy~e-AGAD~Ifi-----e~~-----------~s~eei~~i~~~v~~vP~~~N~l 285 (462)
+- .|... -.+ -+.|+.|.+ .|+|++-+ ++. -+.+.+++|.+.++.+|+ ++
T Consensus 150 gg~ed~~~~~~~~~T~----peeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~~vPL---VL 222 (321)
T PRK07084 150 AGVEDEVSAEHHTYTQ----PEEVEDFVKKTGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIPGFPI---VL 222 (321)
T ss_pred cCccCCccCcccccCC----HHHHHHHHHHhCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcCCCCE---EE
Confidence 11 11100 012 345666664 69998764 232 145778888888754675 46
Q ss_pred ecCCCCC------------------CCCHHHHH---hcCCCEEeccchHHHHHHHHHHHHHH
Q 012478 286 EGGGKTP------------------ILNPLELE---ELGFKLVAYPLSLIGVSVRAMQDALT 326 (462)
Q Consensus 286 ~~~g~tP------------------~ls~~eL~---~lGv~~V~yp~~ll~aa~~Am~~~l~ 326 (462)
.|+..+| .++.++++ ++|++-|-+..-+..+...++++.+.
T Consensus 223 HGgSg~~~~~~~~~~~~g~~~~~~~Gi~~e~~~kai~~GI~KINi~Tdl~~a~~~~~~~~l~ 284 (321)
T PRK07084 223 HGSSSVPQEYVKTINEYGGKLKDAIGIPEEQLRKAAKSAVCKINIDSDGRLAMTAAIRKVFD 284 (321)
T ss_pred eCCCCCcHHHHHHHHHhcCccccCCCCCHHHHHHHHHcCCceeccchHHHHHHHHHHHHHHH
Confidence 6544344 56666665 57999999999999999999998864
No 97
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=96.78 E-value=0.058 Score=51.47 Aligned_cols=196 Identities=21% Similarity=0.197 Sum_probs=108.4
Q ss_pred ccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHH-hhcCCcEEEeCCCCCCCHHHHHHHHHH
Q 012478 95 ACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLIT-QAVSIPVIGDGDNGYGNAMNVKRTVKG 173 (462)
Q Consensus 95 ~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~-ra~~iPVIaD~DtGyG~~~nv~rtVk~ 173 (462)
++=|...=+++.+.|.+.+|+= +-.+...+.... .+ ..... ...+.|+++=+=. +++....+.++.
T Consensus 9 ~~~~~~fR~l~~~~~~~~~~t~-~~~~~~~~~~~~------~~----~~~~~~~~~~~p~~~qi~g--~~~~~~~~aa~~ 75 (231)
T cd02801 9 GVTDLPFRLLCRRYGADLVYTE-MISAKALLRGNR------KR----LRLLTRNPEERPLIVQLGG--SDPETLAEAAKI 75 (231)
T ss_pred CCcCHHHHHHHHHHCCCEEEec-CEEEhhhhhcCH------HH----HHhhccCccCCCEEEEEcC--CCHHHHHHHHHH
Confidence 5556666677778887777743 111111111111 00 01111 1235888877542 257888899999
Q ss_pred HHHhCccEEEeCCCCCCC--CC-CCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhH
Q 012478 174 YIKAGFAGIILEDQVSPK--GC-GHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFA 250 (462)
Q Consensus 174 l~~AGaaGI~IEDq~~PK--rC-GH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~ 250 (462)
+.++|++||.|--.. |. .. ++.++.-+-..+...+.|++.+++. +..+.+-.|.--. .. +++++-++.+.
T Consensus 76 ~~~aG~d~ieln~g~-p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~---~~~v~vk~r~~~~--~~-~~~~~~~~~l~ 148 (231)
T cd02801 76 VEELGADGIDLNMGC-PSPKVTKGGAGAALLKDPELVAEIVRAVREAV---PIPVTVKIRLGWD--DE-EETLELAKALE 148 (231)
T ss_pred HHhcCCCEEEEeCCC-CHHHHhCCCeeehhcCCHHHHHHHHHHHHHhc---CCCEEEEEeeccC--Cc-hHHHHHHHHHH
Confidence 999999999995431 10 00 1112222224455556666665442 2344444442111 01 57889999999
Q ss_pred hcCCcEEEecCC---------CCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhc-CCCEEeccchHHH
Q 012478 251 DAGADVLFIDAL---------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEEL-GFKLVAYPLSLIG 315 (462)
Q Consensus 251 eAGAD~Ifie~~---------~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~l-Gv~~V~yp~~ll~ 315 (462)
++|+|.|-+++. .+.+.++++.+... +|+.+| ||-.-.-+.+++.+. |+..|..+-.++.
T Consensus 149 ~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~-ipvi~~----Ggi~~~~d~~~~l~~~gad~V~igr~~l~ 218 (231)
T cd02801 149 DAGASALTVHGRTREQRYSGPADWDYIAEIKEAVS-IPVIAN----GDIFSLEDALRCLEQTGVDGVMIGRGALG 218 (231)
T ss_pred HhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCC-CeEEEe----CCCCCHHHHHHHHHhcCCCEEEEcHHhHh
Confidence 999999966543 24556667766554 676654 232111134555555 7999888775543
No 98
>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=96.78 E-value=0.062 Score=54.22 Aligned_cols=151 Identities=19% Similarity=0.231 Sum_probs=108.5
Q ss_pred eeccccc-CCCccccccCchHHHHHHHHhCCCceEecccCChHHHHHHHHhCCcEEEeccHHH-------HhhhccCCC-
Q 012478 59 NRTRVYR-KNSTGVEACLSPAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSI-------SAARLALPD- 129 (462)
Q Consensus 59 ~~~R~y~-rgs~~~~~a~~~a~~LR~ll~~~~~iv~p~ayDalSArl~e~aGfdaI~vSG~av-------Sas~lG~PD- 129 (462)
.|++||+ || +.++ +.-+-|++..++-+.-++-.++|.-.+..+.+. .|.+.++..-+ ++...|.|=
T Consensus 54 pRTSp~sFqG-~G~e---eGL~~L~~vk~~~GlpvvTeV~~~~~~~~v~~~-~DilQIgArn~rn~~LL~a~g~t~kpV~ 128 (264)
T PRK05198 54 NRSSIHSFRG-PGLE---EGLKILQEVKETFGVPVLTDVHEPEQAAPVAEV-VDVLQIPAFLCRQTDLLVAAAKTGKVVN 128 (264)
T ss_pred CCCCCCCCCC-CChH---HHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhh-CcEEEECchhcchHHHHHHHhccCCeEE
Confidence 6778886 44 2222 445677777777777788899999999999888 99999997332 222234432
Q ss_pred ---CCCCCHHHHHHHHHHHHhh-------------------------------cCCcEEEeCCCC-----------CCCH
Q 012478 130 ---TGFISYGEMVDQGQLITQA-------------------------------VSIPVIGDGDNG-----------YGNA 164 (462)
Q Consensus 130 ---~g~vsl~Eml~~~~~I~ra-------------------------------~~iPVIaD~DtG-----------yG~~ 164 (462)
...++.+||+..++.|... .++|||+|.=++ -|..
T Consensus 129 lKrG~~~t~~e~~~aaeyi~~~Gn~~vilcERG~tf~y~r~~~D~~~vp~~k~~~lPVi~DpSHsvq~pg~~~~~s~G~r 208 (264)
T PRK05198 129 IKKGQFLAPWDMKNVVDKVREAGNDKIILCERGTSFGYNNLVVDMRGLPIMRETGAPVIFDATHSVQLPGGQGGSSGGQR 208 (264)
T ss_pred ecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCCcCCCCeeechhhhHHHhhCCCCEEEeCCccccCCCCCCCCCCCcH
Confidence 3468999999998888542 358999999886 4566
Q ss_pred HHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHH
Q 012478 165 MNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAV 215 (462)
Q Consensus 165 ~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~ 215 (462)
.-|.-..+.-+.+||+|+.||=-..|. +.-.+|...++.+++.+-++.++
T Consensus 209 ~~v~~la~AAvA~GadGl~iEvHpdP~-~AlsDg~q~l~~~~~~~ll~~l~ 258 (264)
T PRK05198 209 EFVPVLARAAVAVGVAGLFIETHPDPD-NALSDGPNMLPLDKLEPLLEQLK 258 (264)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeCCCcc-ccCCCccccCCHHHHHHHHHHHH
Confidence 677888888899999999999765554 23456777777777665555444
No 99
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=96.67 E-value=0.03 Score=57.44 Aligned_cols=227 Identities=17% Similarity=0.177 Sum_probs=127.2
Q ss_pred cccCChHHHHHHHHhC-CcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHH-HhhcCCcEEEeCCCCCC-CHHHHHHH
Q 012478 94 PACFDALSAKLVEKSG-FSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLI-TQAVSIPVIGDGDNGYG-NAMNVKRT 170 (462)
Q Consensus 94 p~ayDalSArl~e~aG-fdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I-~ra~~iPVIaD~DtGyG-~~~nv~rt 170 (462)
-|.=|...=+++.+.| ++.+|+- +- ++..+-+++-....+.+++ ... ......|+++-+ +| ++....++
T Consensus 9 ag~td~~fR~l~~~~g~~~~~~te-mv-s~~~~~~~~~~~~~~~~~~---~~~~~~~~e~p~~vQl---~g~~p~~~~~a 80 (312)
T PRK10550 9 EGVLDSLVRELLTEVNDYDLCITE-FL-RVVDQLLPVKVFHRLCPEL---HNASRTPSGTLVRIQL---LGQYPQWLAEN 80 (312)
T ss_pred CCCcCHHHHHHHHHhCCCCEEEeC-CE-EechhcccchhHHHHhHHh---cccCCCCCCCcEEEEe---ccCCHHHHHHH
Confidence 3777888878888888 6766653 11 1100112111111111111 000 112247888776 45 57788889
Q ss_pred HHHHHHhCccEEEeCCCC-CCCCCCCCCCCccc-CHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHH
Q 012478 171 VKGYIKAGFAGIILEDQV-SPKGCGHTRGRKVV-SREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRA 248 (462)
Q Consensus 171 Vk~l~~AGaaGI~IEDq~-~PKrCGH~~gk~Lv-p~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakA 248 (462)
++.+.++|+++|.|-=+. .||....-.|-.|. .++...+-+++++++- +.++-|..|+-.- -...++.++-++.
T Consensus 81 A~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~---~~~~pVsvKiR~g-~~~~~~~~~~a~~ 156 (312)
T PRK10550 81 AARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAV---PAHLPVTVKVRLG-WDSGERKFEIADA 156 (312)
T ss_pred HHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhc---CCCcceEEEEECC-CCCchHHHHHHHH
Confidence 999999999999997664 23333222332333 3343444444444432 2245555554221 1123568899999
Q ss_pred hHhcCCcEEEecCCC----------CHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHH----HHhcCCCEEeccchHH
Q 012478 249 FADAGADVLFIDALA----------SKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLE----LEELGFKLVAYPLSLI 314 (462)
Q Consensus 249 y~eAGAD~Ifie~~~----------s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~e----L~~lGv~~V~yp~~ll 314 (462)
++++|+|.|-|++-. +.+.++++.+.+. +|+..| |+ ..+.++ |+.-|+..|.++-.++
T Consensus 157 l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~-iPVi~n----Gd---I~t~~da~~~l~~~g~DgVmiGRg~l 228 (312)
T PRK10550 157 VQQAGATELVVHGRTKEDGYRAEHINWQAIGEIRQRLT-IPVIAN----GE---IWDWQSAQQCMAITGCDAVMIGRGAL 228 (312)
T ss_pred HHhcCCCEEEECCCCCccCCCCCcccHHHHHHHHhhcC-CcEEEe----CC---cCCHHHHHHHHhccCCCEEEEcHHhH
Confidence 999999999998631 4566788888775 787766 23 224433 3456899998877655
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcC
Q 012478 315 GVSVRAMQDALTAIKGGRIPSPGSMPSFQEIKETLG 350 (462)
Q Consensus 315 ~aa~~Am~~~l~~l~~g~~~~~~~~~s~~e~~~lvg 350 (462)
.-- ..++++++|. + .++++|+.+++-
T Consensus 229 ~nP-----~lf~~~~~g~-~----~~~~~e~~~~~~ 254 (312)
T PRK10550 229 NIP-----NLSRVVKYNE-P----RMPWPEVVALLQ 254 (312)
T ss_pred hCc-----HHHHHhhcCC-C----CCCHHHHHHHHH
Confidence 432 2334444443 1 246777765443
No 100
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=96.62 E-value=0.93 Score=47.62 Aligned_cols=224 Identities=13% Similarity=0.127 Sum_probs=142.2
Q ss_pred HHHHHHHhCCCceEecccCChHHHHHH----HHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcC-CcE
Q 012478 79 KSLRQILELPGVHQGPACFDALSAKLV----EKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVS-IPV 153 (462)
Q Consensus 79 ~~LR~ll~~~~~iv~p~ayDalSArl~----e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~-iPV 153 (462)
+-|....+.+-.+-+.|||+.-+++.+ |+.+-+.|+..+-+.. .. +.++.+...++.+++..+ +||
T Consensus 6 ~iL~~A~~~~yAV~AfN~~n~e~~~aii~AAEe~~sPvIlq~s~~~~-~~--------~g~~~~~~~~~~~ae~~~~VPV 76 (347)
T TIGR01521 6 QLLDHAAEFGYGVPAFNVNNMEQMRAIMEAADKTDSPVILQASRGAR-SY--------AGAPFLRHLILAAIEEYPHIPV 76 (347)
T ss_pred HHHHHHHHcCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECCcchh-hh--------CCHHHHHHHHHHHHHhCCCCcE
Confidence 345555666666888999999998654 5668998887753321 11 235566777777877775 999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCC-CCcccCHHHHHHHHHHHHHHHHhhCC----CeEEE
Q 012478 154 IGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTR-GRKVVSREEAVMRIKAAVDARKESGS----DIVIV 228 (462)
Q Consensus 154 IaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~-gk~Lvp~ee~~~kI~AA~~Ar~~~g~----d~vIi 228 (462)
.+=.|+|. +. +.+++.+++|...|.|... |.. .+.-.|.+|=+++-+.+++-+...|. ++=.+
T Consensus 77 alHLDHg~-~~----e~i~~Ai~~GFtSVMiDgS-------~l~~~~~~~p~eENI~~Tkevve~Ah~~GvsVEaELG~i 144 (347)
T TIGR01521 77 VMHQDHGN-SP----ATCQRAIQLGFTSVMMDGS-------LREDAKTPADYDYNVRVTAEVVAFAHAVGASVEGELGCL 144 (347)
T ss_pred EEECCCCC-CH----HHHHHHHHcCCCEEeecCc-------CCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeec
Confidence 99999994 43 4456678899999999443 321 22346888888888888777764331 11111
Q ss_pred Eec--------chhhccc---HHH---HHHHHHHhHh-cCCcEEEe-----cCC-----------CCHHHHHHHHHhCCC
Q 012478 229 ART--------DSRQALS---LEE---SLRRSRAFAD-AGADVLFI-----DAL-----------ASKEEMKAFCEISPL 277 (462)
Q Consensus 229 ART--------DA~~~~g---lde---AI~RakAy~e-AGAD~Ifi-----e~~-----------~s~eei~~i~~~v~~ 277 (462)
+-. |...... .++ --+.|+.|.+ .|+|++-+ +++ -+.+.+++|.+.++.
T Consensus 145 gg~e~~~~g~~d~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v~~ 224 (347)
T TIGR01521 145 GSLETGMGEAEDGHGFEGVLDHSQLLTDPEEAADFVKKTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARLPD 224 (347)
T ss_pred ccccccccccccCcccccccchhhcCCCHHHHHHHHHHHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccCCC
Confidence 211 1100000 000 1245677774 69998753 332 134566777777744
Q ss_pred CceeeeeeecCCCCC------------------CCCHHHH---HhcCCCEEeccchHHHHHHHHHHHHHH
Q 012478 278 VPKMANMLEGGGKTP------------------ILNPLEL---EELGFKLVAYPLSLIGVSVRAMQDALT 326 (462)
Q Consensus 278 vP~~~N~l~~~g~tP------------------~ls~~eL---~~lGv~~V~yp~~ll~aa~~Am~~~l~ 326 (462)
+|+ ++.|+..+| .++.+++ -++|++-|-+...+..+.+.++++.+.
T Consensus 225 vPL---VLHGgSG~p~~~~~~~~~~~~~~~~~~g~p~e~i~~ai~~GI~KVNi~Tdl~~a~~~~~~~~~~ 291 (347)
T TIGR01521 225 THL---VMHGSSSVPQEWLDIINEYGGEIKETYGVPVEEIVEGIKYGVRKVNIDTDLRLASTAAFRRFAA 291 (347)
T ss_pred CCE---EEeCCCCCchHhhHHHHhhcccccccCCCCHHHHHHHHHCCCeeEEeChHHHHHHHHHHHHHHH
Confidence 665 456543344 2335555 468999999999999999999988764
No 101
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=96.61 E-value=0.4 Score=49.99 Aligned_cols=216 Identities=16% Similarity=0.147 Sum_probs=113.9
Q ss_pred hHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhc-CCcEEEeCCC----CCCCHHHHHHHHHH
Q 012478 99 ALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV-SIPVIGDGDN----GYGNAMNVKRTVKG 173 (462)
Q Consensus 99 alSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~-~iPVIaD~Dt----GyG~~~nv~rtVk~ 173 (462)
.--|+.++++|.. +.+++... ++-|- ++.+..+.+.+.+ +.|+++-.=. |+ ++..+.+.++.
T Consensus 80 ~~La~~a~~~G~~-~~~Gs~~~-----~~~~~------~~~~~~~~vr~~~p~~p~~aNl~~~~~~~~-~~~~~~~~~~~ 146 (352)
T PRK05437 80 RKLAEAAEELGIA-MGVGSQRA-----ALKDP------ELADSFSVVRKVAPDGLLFANLGAVQLYGY-GVEEAQRAVEM 146 (352)
T ss_pred HHHHHHHHHcCCC-eEecccHh-----hccCh------hhHHHHHHHHHHCCCceEEeecCccccCCC-CHHHHHHHHHh
Confidence 3446778888884 44454332 12121 2334444555555 7898875432 33 34556655544
Q ss_pred HHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcC
Q 012478 174 YIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAG 253 (462)
Q Consensus 174 l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAG 253 (462)
+ ++.+--||+.- +..+....+. .+.+.+++.|+++++.- +.+++|-..-. ++. .+-|+...++|
T Consensus 147 ~-~adal~l~l~~---~qe~~~p~g~--~~f~~~le~i~~i~~~~---~vPVivK~~g~-----g~s--~~~a~~l~~~G 210 (352)
T PRK05437 147 I-EADALQIHLNP---LQELVQPEGD--RDFRGWLDNIAEIVSAL---PVPVIVKEVGF-----GIS--KETAKRLADAG 210 (352)
T ss_pred c-CCCcEEEeCcc---chhhcCCCCc--ccHHHHHHHHHHHHHhh---CCCEEEEeCCC-----CCc--HHHHHHHHHcC
Confidence 4 45555555521 1111111111 12444567777776653 23444432211 111 45688889999
Q ss_pred CcEEEecCC---------------------------CCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcCCCE
Q 012478 254 ADVLFIDAL---------------------------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKL 306 (462)
Q Consensus 254 AD~Ifie~~---------------------------~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~ 306 (462)
+|+|.+.+. ++.+.+.++.+.+..+|+. ..||-.-..+..+.-.+|.+.
T Consensus 211 vd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~~ipvi----a~GGI~~~~dv~k~l~~GAd~ 286 (352)
T PRK05437 211 VKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLLPDLPII----ASGGIRNGLDIAKALALGADA 286 (352)
T ss_pred CCEEEECCCCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhcCCCeEE----EECCCCCHHHHHHHHHcCCCE
Confidence 999998552 1223344444443234443 334533345667788889999
Q ss_pred EeccchHHHHHH----HHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCcccHHHH
Q 012478 307 VAYPLSLIGVSV----RAMQDALTAIKGGRIPSPGSMPSFQEIKETLGFNTYYEE 357 (462)
Q Consensus 307 V~yp~~ll~aa~----~Am~~~l~~l~~g~~~~~~~~~s~~e~~~lvg~~~~~~~ 357 (462)
|.++..++.++. .++.+.++.++++ ++.+..++|.....++
T Consensus 287 v~ig~~~l~~~~~~g~~~v~~~i~~~~~e----------L~~~m~~~G~~~i~eL 331 (352)
T PRK05437 287 VGMAGPFLKAALEGGEEAVIELIEQWIEE----------LKIAMFLTGAKNIAEL 331 (352)
T ss_pred EEEhHHHHHHHHhccHHHHHHHHHHHHHH----------HHHHHHHhCCCCHHHh
Confidence 999999888753 3344455555432 3444455555555444
No 102
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=96.61 E-value=0.45 Score=48.10 Aligned_cols=88 Identities=14% Similarity=0.174 Sum_probs=64.8
Q ss_pred HHHHHHHhCCCceE--ecccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEe
Q 012478 79 KSLRQILELPGVHQ--GPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGD 156 (462)
Q Consensus 79 ~~LR~ll~~~~~iv--~p~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD 156 (462)
..|+++|+++++.+ .....++..+.++..+|||.+++=- -+ +.++++++.+.++.+. ..+++.+|=
T Consensus 7 n~lk~~L~~G~~~~G~~~~~~sp~~~E~~a~~GfD~v~iD~------EH-----g~~~~~~l~~~i~a~~-~~g~~~lVR 74 (267)
T PRK10128 7 NPFKEGLRKGEVQIGLWLSSTTSYMAEIAATSGYDWLLIDG------EH-----APNTIQDLYHQLQAIA-PYASQPVIR 74 (267)
T ss_pred hHHHHHHHcCCceEEEEecCCCcHHHHHHHHcCCCEEEEcc------cc-----CCCCHHHHHHHHHHHH-hcCCCeEEE
Confidence 35899999888653 3456678889999999999999742 12 3577888887777764 566666777
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCccEEEe
Q 012478 157 GDNGYGNAMNVKRTVKGYIKAGFAGIIL 184 (462)
Q Consensus 157 ~DtGyG~~~nv~rtVk~l~~AGaaGI~I 184 (462)
.+.+ ++ ..+++..++||.||.+
T Consensus 75 vp~~--~~----~~i~r~LD~GA~GIiv 96 (267)
T PRK10128 75 PVEG--SK----PLIKQVLDIGAQTLLI 96 (267)
T ss_pred CCCC--CH----HHHHHHhCCCCCeeEe
Confidence 7654 43 5567888999999987
No 103
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=96.61 E-value=0.049 Score=55.01 Aligned_cols=140 Identities=23% Similarity=0.279 Sum_probs=82.9
Q ss_pred HHHHHHHHHHhCccEEEeCCCC--------CC---CCCCCCCCCcccC-HHHHHHHHHHHHHHHHhhCCCeEEEEecchh
Q 012478 167 VKRTVKGYIKAGFAGIILEDQV--------SP---KGCGHTRGRKVVS-REEAVMRIKAAVDARKESGSDIVIVARTDSR 234 (462)
Q Consensus 167 v~rtVk~l~~AGaaGI~IEDq~--------~P---KrCGH~~gk~Lvp-~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~ 234 (462)
..+.+++++++|++||.|--.. .| +|...-+|- +.. .....+.|++++++ .|+++.|..|....
T Consensus 143 ~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs-~enr~r~~~eii~avr~~---~g~d~~i~vris~~ 218 (327)
T cd02803 143 FAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGS-LENRARFLLEIVAAVREA---VGPDFPVGVRLSAD 218 (327)
T ss_pred HHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCC-HHHHHHHHHHHHHHHHHH---cCCCceEEEEechh
Confidence 3455677888999999996541 12 333332332 211 22234455555544 36788888886542
Q ss_pred h----cccHHHHHHHHHHhHhcCCcEEEecCC-----------------CCHHHHHHHHHhCCCCceeeeeeecCCCCCC
Q 012478 235 Q----ALSLEESLRRSRAFADAGADVLFIDAL-----------------ASKEEMKAFCEISPLVPKMANMLEGGGKTPI 293 (462)
Q Consensus 235 ~----~~gldeAI~RakAy~eAGAD~Ifie~~-----------------~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ 293 (462)
. ....+++++-++.+.++|+|.|-+... ...+.++++.+.++ +|+..+ ++-.-.
T Consensus 219 ~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~-iPVi~~----Ggi~t~ 293 (327)
T cd02803 219 DFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVK-IPVIAV----GGIRDP 293 (327)
T ss_pred ccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCC-CCEEEe----CCCCCH
Confidence 1 235789999999999999999954321 12345666777664 676543 232211
Q ss_pred CCHHHHHhc-CCCEEeccchHHH
Q 012478 294 LNPLELEEL-GFKLVAYPLSLIG 315 (462)
Q Consensus 294 ls~~eL~~l-Gv~~V~yp~~ll~ 315 (462)
-..+++-+. |+..|.++-.++.
T Consensus 294 ~~a~~~l~~g~aD~V~igR~~la 316 (327)
T cd02803 294 EVAEEILAEGKADLVALGRALLA 316 (327)
T ss_pred HHHHHHHHCCCCCeeeecHHHHh
Confidence 234555565 6888888765553
No 104
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=96.60 E-value=0.31 Score=49.38 Aligned_cols=200 Identities=14% Similarity=0.122 Sum_probs=111.5
Q ss_pred hHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHHhC
Q 012478 99 ALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAG 178 (462)
Q Consensus 99 alSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~AG 178 (462)
..-|+.++++|...++.+ .. ..+++++.+. ..-|+.+-.= +..++....+.++.+++.|
T Consensus 84 ~~la~aa~~~g~~~~~~~-~~------------~~~~~~i~~~-------~~~~~~~ql~-~~~~~~~~~~~i~~~~~~g 142 (299)
T cd02809 84 LATARAAAAAGIPFTLST-VS------------TTSLEEVAAA-------APGPRWFQLY-VPRDREITEDLLRRAEAAG 142 (299)
T ss_pred HHHHHHHHHcCCCEEecC-CC------------cCCHHHHHHh-------cCCCeEEEEe-ecCCHHHHHHHHHHHHHcC
Confidence 367788888887544432 11 1245554322 2256666541 1125667777888888999
Q ss_pred ccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEE
Q 012478 179 FAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLF 258 (462)
Q Consensus 179 aaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~If 258 (462)
+.+|.|--.. -+.+.. ...+ .|+.++++- +..+++... .. .+.++..+++|||+|.
T Consensus 143 ~~~i~l~~~~-----p~~~~~---~~~~---~i~~l~~~~---~~pvivK~v------~s----~~~a~~a~~~G~d~I~ 198 (299)
T cd02809 143 YKALVLTVDT-----PVLGRR---LTWD---DLAWLRSQW---KGPLILKGI------LT----PEDALRAVDAGADGIV 198 (299)
T ss_pred CCEEEEecCC-----CCCCCC---CCHH---HHHHHHHhc---CCCEEEeec------CC----HHHHHHHHHCCCCEEE
Confidence 9998885442 221111 1112 344444332 223333321 12 3357888899999999
Q ss_pred ecC---------CCCHHHHHHHHHhCC-CCceeeeeeecCCCCCCCCHHHHHhcCCCEEeccchHHHHHH----HHHHHH
Q 012478 259 IDA---------LASKEEMKAFCEISP-LVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVSV----RAMQDA 324 (462)
Q Consensus 259 ie~---------~~s~eei~~i~~~v~-~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~ll~aa~----~Am~~~ 324 (462)
+.+ +++.+.+.++.+.++ .+|++.+ ||-.-..+..+.-.+|.+.|.++...+.... .++.+.
T Consensus 199 v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~----GGI~~~~d~~kal~lGAd~V~ig~~~l~~~~~~g~~~v~~~ 274 (299)
T cd02809 199 VSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLD----GGIRRGTDVLKALALGADAVLIGRPFLYGLAAGGEAGVAHV 274 (299)
T ss_pred EcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEe----CCCCCHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHH
Confidence 843 456677778877764 3565433 4433234555555799999999998776643 234444
Q ss_pred HHHHHcCCCCCCCCCCCHHHHHHhcCcccHHHH
Q 012478 325 LTAIKGGRIPSPGSMPSFQEIKETLGFNTYYEE 357 (462)
Q Consensus 325 l~~l~~g~~~~~~~~~s~~e~~~lvg~~~~~~~ 357 (462)
+..+++. ++....+.|+....++
T Consensus 275 i~~l~~e----------l~~~m~~~G~~~i~~l 297 (299)
T cd02809 275 LEILRDE----------LERAMALLGCASLADL 297 (299)
T ss_pred HHHHHHH----------HHHHHHHHCCCCHHHh
Confidence 4444432 3444455555554443
No 105
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=96.59 E-value=0.024 Score=58.84 Aligned_cols=140 Identities=17% Similarity=0.185 Sum_probs=94.5
Q ss_pred HHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchh-hcccHHHHHHHHH
Q 012478 169 RTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSR-QALSLEESLRRSR 247 (462)
Q Consensus 169 rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~-~~~gldeAI~Rak 247 (462)
-+.+.+.++|++.|-+-|...--.-||.++. -++.++|+...++++.+.. .-++++=-.-. ...+.+++++-|.
T Consensus 46 ~sA~i~d~aGvD~ILVGDSlgmv~lG~~~T~-~Vtld~mi~H~~aV~Rga~----~a~vVaDmPfgSY~~s~e~av~nA~ 120 (332)
T PLN02424 46 PSAVHVDSAGIDVCLVGDSAAMVVHGHDTTL-PITLDEMLVHCRAVARGAN----RPLLVGDLPFGSYESSTDQAVESAV 120 (332)
T ss_pred HHHHHHHHcCCCEEEECCcHHHHhcCCCCCC-CcCHHHHHHHHHHHhccCC----CCEEEeCCCCCCCCCCHHHHHHHHH
Confidence 3456788899999999998643345776643 4799999999999887753 34555432222 2246899999999
Q ss_pred Hh-HhcCCcEEEecCC-C-CHHHHHHHHHhCCCCcee---------eeeeec---CCCCCC------CCHHHHHhcCCCE
Q 012478 248 AF-ADAGADVLFIDAL-A-SKEEMKAFCEISPLVPKM---------ANMLEG---GGKTPI------LNPLELEELGFKL 306 (462)
Q Consensus 248 Ay-~eAGAD~Ifie~~-~-s~eei~~i~~~v~~vP~~---------~N~l~~---~g~tP~------ls~~eL~~lGv~~ 306 (462)
.+ .++||++|-+|+- . ..+.++++++. ++|++ +|.+.+ .|++.. -....|+++|...
T Consensus 121 rl~~eaGa~aVKlEGg~~~~~~~I~~l~~~--GIPV~gHiGLtPQs~~~lGGykvqGr~~~~a~~li~dA~ale~AGAf~ 198 (332)
T PLN02424 121 RMLKEGGMDAVKLEGGSPSRVTAAKAIVEA--GIAVMGHVGLTPQAISVLGGFRPQGRTAESAVKVVETALALQEAGCFA 198 (332)
T ss_pred HHHHHhCCcEEEECCCcHHHHHHHHHHHHc--CCCEEEeecccceeehhhcCccccCCCHHHHHHHHHHHHHHHHcCCcE
Confidence 98 5799999999986 2 23567777743 35655 334422 233321 0346788999988
Q ss_pred EeccchHHH
Q 012478 307 VAYPLSLIG 315 (462)
Q Consensus 307 V~yp~~ll~ 315 (462)
+.++...-.
T Consensus 199 ivLE~Vp~~ 207 (332)
T PLN02424 199 VVLECVPAP 207 (332)
T ss_pred EEEcCCcHH
Confidence 888775544
No 106
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=96.57 E-value=0.02 Score=57.03 Aligned_cols=174 Identities=16% Similarity=0.177 Sum_probs=100.2
Q ss_pred eccccCCCCCccceeecceeeeeccch--hhhhhcccCCCCceeecccccCCCccccccCchHHHHHHHHhCCCceEec-
Q 012478 18 CLFHSNSRPSSFLGINNNTISFNKTNT--NTLLLNTATNPGTINRTRVYRKNSTGVEACLSPAKSLRQILELPGVHQGP- 94 (462)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Pr~~~~~R~y~rgs~~~~~a~~~a~~LR~ll~~~~~iv~p- 94 (462)
.+|-..-+++.+-+++|-+=-.+-+.. ...+.+....-.|..+.-.--.-.+.++. ...-+.=+.|.+ .++.++|
T Consensus 52 ~~~~~~i~~~~~~lLPNTaGc~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~-~etl~Aae~Lv~-eGF~VlPY 129 (247)
T PF05690_consen 52 DNILDYIDRSGYTLLPNTAGCRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDP-IETLKAAEILVK-EGFVVLPY 129 (247)
T ss_dssp HHCCCCTTCCTSEEEEE-TT-SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-H-HHHHHHHHHHHH-TT-EEEEE
T ss_pred ccHHHHhcccCCEECCcCCCCCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCCh-hHHHHHHHHHHH-CCCEEeec
Confidence 345555666788889997654443332 23456666788897775544333333331 111223344444 4577777
Q ss_pred ccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHH
Q 012478 95 ACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGY 174 (462)
Q Consensus 95 ~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l 174 (462)
+.-|...|+-++++|+.++.--|.-+. |-+|+-+ .+..+.|.+..++|||+|+ |-|.+.++.. .
T Consensus 130 ~~~D~v~akrL~d~GcaavMPlgsPIG-Sg~Gi~n---------~~~l~~i~~~~~vPvIvDA--GiG~pSdaa~----A 193 (247)
T PF05690_consen 130 CTDDPVLAKRLEDAGCAAVMPLGSPIG-SGRGIQN---------PYNLRIIIERADVPVIVDA--GIGTPSDAAQ----A 193 (247)
T ss_dssp E-S-HHHHHHHHHTT-SEBEEBSSSTT-T---SST---------HHHHHHHHHHGSSSBEEES-----SHHHHHH----H
T ss_pred CCCCHHHHHHHHHCCCCEEEecccccc-cCcCCCC---------HHHHHHHHHhcCCcEEEeC--CCCCHHHHHH----H
Confidence 777899999999999999998776664 4456544 2456677777799999997 7888877763 3
Q ss_pred HHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHH
Q 012478 175 IKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARK 219 (462)
Q Consensus 175 ~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~ 219 (462)
.|.|++||.+.--+. + . -++-.|+.-.+.|++|.+
T Consensus 194 MElG~daVLvNTAiA--~----A----~dPv~MA~Af~~AV~AGR 228 (247)
T PF05690_consen 194 MELGADAVLVNTAIA--K----A----KDPVAMARAFKLAVEAGR 228 (247)
T ss_dssp HHTT-SEEEESHHHH--T----S----SSHHHHHHHHHHHHHHHH
T ss_pred HHcCCceeehhhHHh--c----c----CCHHHHHHHHHHHHHHHH
Confidence 478999999965431 0 1 123467777777777765
No 107
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=96.57 E-value=0.11 Score=52.78 Aligned_cols=149 Identities=18% Similarity=0.226 Sum_probs=105.5
Q ss_pred eeccccc-CCCccccccCchHHHHHHHHhCCCceEecccCChHHHHHHHHhCCcEEEeccHH-------HHhhhccCCC-
Q 012478 59 NRTRVYR-KNSTGVEACLSPAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFS-------ISAARLALPD- 129 (462)
Q Consensus 59 ~~~R~y~-rgs~~~~~a~~~a~~LR~ll~~~~~iv~p~ayDalSArl~e~aGfdaI~vSG~a-------vSas~lG~PD- 129 (462)
.++++|+ || +.++ ..-+-|++..++-+..++-.++|.-.+.++.+. .|.+.++.+- .++...|.|=
T Consensus 60 pRTSp~sFqG-~G~e---eGL~iL~~vk~~~GlpvvTeV~~~~~~~~~ae~-vDilQIgAr~~rntdLL~a~~~t~kpV~ 134 (281)
T PRK12457 60 NRSSIHSYRG-VGLD---EGLRIFEEVKARFGVPVITDVHEVEQAAPVAEV-ADVLQVPAFLARQTDLVVAIAKTGKPVN 134 (281)
T ss_pred CCCCCCCCCC-CCHH---HHHHHHHHHHHHHCCceEEEeCCHHHHHHHhhh-CeEEeeCchhhchHHHHHHHhccCCeEE
Confidence 4778887 44 2222 445667777777777788899999999999888 9999999733 2222334432
Q ss_pred ---CCCCCHHHHHHHHHHHHhh---------------------------------cCCcEEEeCCCC-----------CC
Q 012478 130 ---TGFISYGEMVDQGQLITQA---------------------------------VSIPVIGDGDNG-----------YG 162 (462)
Q Consensus 130 ---~g~vsl~Eml~~~~~I~ra---------------------------------~~iPVIaD~DtG-----------yG 162 (462)
...++.+||+..++.|... +++|||+|.=++ -|
T Consensus 135 lKrGqf~s~~e~~~aae~i~~~Gn~~vilcERG~~fgy~~~~~D~~~ip~mk~~~t~lPVi~DpSHsvq~p~~~g~~s~G 214 (281)
T PRK12457 135 IKKPQFMSPTQMKHVVSKCREAGNDRVILCERGSSFGYDNLVVDMLGFRQMKRTTGDLPVIFDVTHSLQCRDPLGAASGG 214 (281)
T ss_pred ecCCCcCCHHHHHHHHHHHHHcCCCeEEEEeCCCCCCCCCcccchHHHHHHHhhCCCCCEEEeCCccccCCCCCCCCCCC
Confidence 3458889999988877531 368999999886 45
Q ss_pred CHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHH
Q 012478 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKA 213 (462)
Q Consensus 163 ~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~A 213 (462)
.-.-|....+.-+.+||+|+.||=-..|. +.-.+|...++.+++.+-++.
T Consensus 215 ~re~v~~larAAvA~GaDGl~iEvHpdP~-~AlsDg~q~l~~~~~~~l~~~ 264 (281)
T PRK12457 215 RRRQVLDLARAGMAVGLAGLFLEAHPDPD-RARCDGPSALPLDQLEPFLSQ 264 (281)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEecCCcc-ccCCCcccccCHHHHHHHHHH
Confidence 56677888888999999999999765554 334567777777655444333
No 108
>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase. In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.
Probab=96.53 E-value=0.13 Score=51.82 Aligned_cols=150 Identities=19% Similarity=0.233 Sum_probs=105.5
Q ss_pred eeccccc-CCCccccccCchHHHHHHHHhCCCceEecccCChHHHHHHHHhCCcEEEeccHHH-------HhhhccCCC-
Q 012478 59 NRTRVYR-KNSTGVEACLSPAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSI-------SAARLALPD- 129 (462)
Q Consensus 59 ~~~R~y~-rgs~~~~~a~~~a~~LR~ll~~~~~iv~p~ayDalSArl~e~aGfdaI~vSG~av-------Sas~lG~PD- 129 (462)
.+++||+ || +.++ +.-+-|++..++-+.-++-.++|.-.+..+.+. .|.+.++..-+ ++...|.|=
T Consensus 46 pRTsp~sFqG-~G~e---eGL~iL~~vk~~~glpvvTeV~~~~~~~~vae~-vDilQIgArn~rn~~LL~a~g~t~kpV~ 120 (258)
T TIGR01362 46 NRSSIHSFRG-PGLE---EGLKILQKVKEEFGVPILTDVHESSQCEPVAEV-VDIIQIPAFLCRQTDLLVAAAKTGRIVN 120 (258)
T ss_pred CCCCCCCCCC-CCHH---HHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhh-CcEEEeCchhcchHHHHHHHhccCCeEE
Confidence 6678886 44 2222 445667777777677788899999999999887 99999997332 111224432
Q ss_pred ---CCCCCHHHHHHHHHHHHhh-------------------------------cCCcEEEeCCCC-----------CCCH
Q 012478 130 ---TGFISYGEMVDQGQLITQA-------------------------------VSIPVIGDGDNG-----------YGNA 164 (462)
Q Consensus 130 ---~g~vsl~Eml~~~~~I~ra-------------------------------~~iPVIaD~DtG-----------yG~~ 164 (462)
...++.+||+..++.|... .++|||+|.=++ -|..
T Consensus 121 lKrG~~~t~~e~l~aaeyi~~~Gn~~viLcERG~tf~y~r~~~D~~~ip~~k~~~~PVi~DpSHsvq~pg~~g~~s~G~r 200 (258)
T TIGR01362 121 VKKGQFLSPWDMKNVVEKVLSTGNKNILLCERGTSFGYNNLVVDMRSLPIMRELGCPVIFDATHSVQQPGGLGGASGGLR 200 (258)
T ss_pred ecCCCcCCHHHHHHHHHHHHHcCCCcEEEEeCCCCcCCCCcccchhhhHHHHhcCCCEEEeCCccccCCCCCCCCCCCcH
Confidence 3458899999988887531 268999999886 4566
Q ss_pred HHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHH
Q 012478 165 MNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAA 214 (462)
Q Consensus 165 ~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA 214 (462)
.-|....+.-+.+||+|+.||=-..|. ....+|...++.+++..-++.+
T Consensus 201 ~~v~~la~AAvA~GaDGl~iEvHpdP~-~AlsDg~q~l~~~~~~~ll~~l 249 (258)
T TIGR01362 201 EFVPTLARAAVAVGIDGLFMETHPDPK-NAKSDGPNMLPLSELEGLLEKL 249 (258)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCCcc-ccCCCccccCCHHHHHHHHHHH
Confidence 678888888999999999999766554 2345677777776655444433
No 109
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=96.48 E-value=0.14 Score=51.86 Aligned_cols=124 Identities=15% Similarity=0.092 Sum_probs=72.5
Q ss_pred ccCCCCCCCC---HHHHHHHHHHHHhhc-CCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCC-CCC
Q 012478 125 LALPDTGFIS---YGEMVDQGQLITQAV-SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHT-RGR 199 (462)
Q Consensus 125 lG~PD~g~vs---l~Eml~~~~~I~ra~-~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~-~gk 199 (462)
.|++-.+.++ ++..++..+.+.+.. +.|+|+-.=.+ .++....+.++.++++|+++|-|-=.. |-..+.. .|.
T Consensus 70 ~g~~n~e~~s~~~~~~~~~~~~~~~~~~~~~p~i~si~G~-~~~~~~~~~a~~~~~~gad~ielN~sC-P~~~~~~~~G~ 147 (299)
T cd02940 70 IGFNNIELISEKPLEYWLKEIRELKKDFPDKILIASIMCE-YNKEDWTELAKLVEEAGADALELNFSC-PHGMPERGMGA 147 (299)
T ss_pred ccccCCccccccCHHHHHHHHHHHHhhCCCCeEEEEecCC-CCHHHHHHHHHHHHhcCCCEEEEECCC-CCCCCCCCCch
Confidence 3554444333 556666666665554 58988876332 266788889999999999999885542 1111111 122
Q ss_pred cc-cCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEe
Q 012478 200 KV-VSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFI 259 (462)
Q Consensus 200 ~L-vp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifi 259 (462)
.+ ...+.+.+-+++++++. +.++.|--|-| +++..+-+++..++|||.|.+
T Consensus 148 ~l~~~~~~~~~iv~~v~~~~---~~Pv~vKl~~~------~~~~~~~a~~~~~~Gadgi~~ 199 (299)
T cd02940 148 AVGQDPELVEEICRWVREAV---KIPVIAKLTPN------ITDIREIARAAKEGGADGVSA 199 (299)
T ss_pred hhccCHHHHHHHHHHHHHhc---CCCeEEECCCC------chhHHHHHHHHHHcCCCEEEE
Confidence 22 23444444444444432 24555554432 345667788889999999873
No 110
>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II. This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=96.48 E-value=1.4 Score=46.17 Aligned_cols=228 Identities=11% Similarity=0.057 Sum_probs=141.7
Q ss_pred HHHHHHhCCCceEecccCChHHHH----HHHHhCCcEEEeccH-HHHhhhcc------CCCCCC-CCHHHHHHHHHHHHh
Q 012478 80 SLRQILELPGVHQGPACFDALSAK----LVEKSGFSFCFTSGF-SISAARLA------LPDTGF-ISYGEMVDQGQLITQ 147 (462)
Q Consensus 80 ~LR~ll~~~~~iv~p~ayDalSAr----l~e~aGfdaI~vSG~-avSas~lG------~PD~g~-vsl~Eml~~~~~I~r 147 (462)
-|....+++--+.+.+||+.-+++ .+|+.+.+.|+..+- +.. ...| .||... +.+..+...++.+++
T Consensus 4 ll~~A~~~~yAV~AfN~~n~e~~~Avi~aAee~~sPvIlq~s~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 82 (340)
T cd00453 4 VFQVAKENNFALPAVNCVGTDSINAVLETAAKVKAPVIVQFSNGGAS-FIAGKGVKSDVPQGAAILGAISGAHHVHQMAE 82 (340)
T ss_pred HHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchHH-HhCCCcccccccchhhhhhHHHHHHHHHHHHH
Confidence 455555666668899999999884 446678998887754 332 2334 356533 346677888888888
Q ss_pred hcCCcEEEeCCCCCCCHHHHHHHHHHHHHhC-----------ccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHH
Q 012478 148 AVSIPVIGDGDNGYGNAMNVKRTVKGYIKAG-----------FAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVD 216 (462)
Q Consensus 148 a~~iPVIaD~DtGyG~~~nv~rtVk~l~~AG-----------aaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~ 216 (462)
..++||.+=.|.|.-.. .+.+++.+++| ...|.| |.. | .|.||=++.-+.+++
T Consensus 83 ~~~VPV~lHLDH~~~~~---~e~i~~ai~~G~~~~~~~~~~~FsSVMi-DgS------~------l~~eeNi~~T~~vve 146 (340)
T cd00453 83 HYGVPVILHTDHCAKKL---LPWIDGLLDAGEKHFAATGKPLFSSHMI-DLS------E------ESLQENIEICSKYLE 146 (340)
T ss_pred HCCCCEEEEcCCCCCCC---HHHHHHHHHcCCccccccCCCCceeEEe-cCC------C------CCHHHHHHHHHHHHH
Confidence 88999999999995211 35677888999 899988 432 2 456776766666666
Q ss_pred HHHhhCC----CeEEEEe-cchhhcccHH-H----HHHHHHHhH-hcC----CcEEEe-----cCC-------CCHHHHH
Q 012478 217 ARKESGS----DIVIVAR-TDSRQALSLE-E----SLRRSRAFA-DAG----ADVLFI-----DAL-------ASKEEMK 269 (462)
Q Consensus 217 Ar~~~g~----d~vIiAR-TDA~~~~gld-e----AI~RakAy~-eAG----AD~Ifi-----e~~-------~s~eei~ 269 (462)
.+...|. ++=.++- .|.......+ + --+.|..|. +.| +|++-+ +++ -+.+.++
T Consensus 147 ~Ah~~gi~VEaElG~igG~ed~~~~~~~~~~~~yT~Peea~~Fv~~Tg~i~pvD~LAvsiGt~HG~Yk~g~p~L~~~~L~ 226 (340)
T cd00453 147 RMSKIGMTLEIELGCTGGEEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFTIAASFGNVHGVYKKGNVVLTPTILR 226 (340)
T ss_pred HHHHcCCEEEEEEEecCCccCCcccccccccccCCCHHHHHHHHHHhCCCCcceEEeeecCccccCCCCCCCccCHHHHH
Confidence 6554321 1111111 1110000000 0 134455666 578 886643 332 1456777
Q ss_pred HHHHhCC--------CCceeeeeeecCCCCCCCCHHHHHhcCCCEEeccchHHHHHHHHHHHHHHH
Q 012478 270 AFCEISP--------LVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVSVRAMQDALTA 327 (462)
Q Consensus 270 ~i~~~v~--------~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~ll~aa~~Am~~~l~~ 327 (462)
++.+.++ .+|+ ++.|+..+|.-...+.-+.|++-|-+...+..+.+.++++.+.+
T Consensus 227 ~i~~~~~~~~gl~~~~~pL---VlHGgSG~~~e~~~~ai~~Gi~KiNi~Te~~~A~~~~~~~~~~~ 289 (340)
T cd00453 227 DSQEYVSKKHNLPHNSLNF---VFHGGSGSTAQEIKDSVSYGVVKMNIDTDTQWATWEGVLNYYKA 289 (340)
T ss_pred HHHHHHHhhcccCCCCCce---EEeCCCCCCHHHHHHHHHcCCeEEEcccHHHHHHHHHHHHHHHh
Confidence 7777662 2443 34553333322334445789999999999999999999888753
No 111
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=96.46 E-value=0.16 Score=49.97 Aligned_cols=176 Identities=14% Similarity=0.156 Sum_probs=98.5
Q ss_pred HHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHHhCcc
Q 012478 101 SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFA 180 (462)
Q Consensus 101 SArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaa 180 (462)
-|+.+++.|++.+++....-+ ..+. ...++.++.|++.+++||+++.. ..+..+ ++++.++|+.
T Consensus 35 ~a~~~~~~G~~~i~i~dl~~~--~~~~--------~~~~~~i~~i~~~~~ipv~~~GG--i~s~~~----~~~~l~~Ga~ 98 (253)
T PRK02083 35 LAKRYNEEGADELVFLDITAS--SEGR--------DTMLDVVERVAEQVFIPLTVGGG--IRSVED----ARRLLRAGAD 98 (253)
T ss_pred HHHHHHHcCCCEEEEEeCCcc--cccC--------cchHHHHHHHHHhCCCCEEeeCC--CCCHHH----HHHHHHcCCC
Confidence 457778899999999875421 1111 13456677888888999998843 334433 3455668999
Q ss_pred EEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHH-HH--HhhC-------CCeEEEEecchhhcccHHHHHHHHHHhH
Q 012478 181 GIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVD-AR--KESG-------SDIVIVARTDSRQALSLEESLRRSRAFA 250 (462)
Q Consensus 181 GI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~-Ar--~~~g-------~d~vIiARTDA~~~~gldeAI~RakAy~ 250 (462)
+|.| +... +-.+ +++.+|....- .+ ..++ .++.|.-|.-... .. ...++-++.+.
T Consensus 99 ~Vii-gt~~-----------l~~p-~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~-~~-~~~~~~~~~~~ 163 (253)
T PRK02083 99 KVSI-NSAA-----------VANP-ELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKP-TG-LDAVEWAKEVE 163 (253)
T ss_pred EEEE-ChhH-----------hhCc-HHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCcee-cC-CCHHHHHHHHH
Confidence 9988 3320 1122 23344432210 00 0000 0111222211100 01 13456677788
Q ss_pred hcCCcEEEecCCC--------CHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHH---Hh-cCCCEEeccchHHH
Q 012478 251 DAGADVLFIDALA--------SKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLEL---EE-LGFKLVAYPLSLIG 315 (462)
Q Consensus 251 eAGAD~Ifie~~~--------s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL---~~-lGv~~V~yp~~ll~ 315 (462)
++|++.+.+..+. +.+.++++++.++ +|+.++ ||- .+.+++ .+ .|+.-|+.+..+..
T Consensus 164 ~~g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~~-ipvia~----GGv---~s~~d~~~~~~~~G~~gvivg~al~~ 232 (253)
T PRK02083 164 ELGAGEILLTSMDRDGTKNGYDLELTRAVSDAVN-VPVIAS----GGA---GNLEHFVEAFTEGGADAALAASIFHF 232 (253)
T ss_pred HcCCCEEEEcCCcCCCCCCCcCHHHHHHHHhhCC-CCEEEE----CCC---CCHHHHHHHHHhCCccEEeEhHHHHc
Confidence 9999998886543 3577888888765 676543 342 244444 44 49998988876554
No 112
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=96.44 E-value=0.086 Score=50.29 Aligned_cols=94 Identities=17% Similarity=0.141 Sum_probs=62.7
Q ss_pred ecccCChH----HHHHHHHhCCcEEEec-cHHHHhhhc-cCCCCCC-CCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHH
Q 012478 93 GPACFDAL----SAKLVEKSGFSFCFTS-GFSISAARL-ALPDTGF-ISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAM 165 (462)
Q Consensus 93 ~p~ayDal----SArl~e~aGfdaI~vS-G~avSas~l-G~PD~g~-vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~ 165 (462)
-.+..|.- .|+.++++|||+|-+- |.......- ++ ...+ -....+.+.++.|.+.+++||.+++-.|+....
T Consensus 60 qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~-G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~~ 138 (231)
T cd02801 60 QLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGA-GAALLKDPELVAEIVRAVREAVPIPVTVKIRLGWDDEE 138 (231)
T ss_pred EEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCe-eehhcCCHHHHHHHHHHHHHhcCCCEEEEEeeccCCch
Confidence 34555544 6788888999999775 322111110 11 0111 134556677778877777999999988875444
Q ss_pred HHHHHHHHHHHhCccEEEeCCC
Q 012478 166 NVKRTVKGYIKAGFAGIILEDQ 187 (462)
Q Consensus 166 nv~rtVk~l~~AGaaGI~IEDq 187 (462)
...+.++.+.++|++.|++-+.
T Consensus 139 ~~~~~~~~l~~~Gvd~i~v~~~ 160 (231)
T cd02801 139 ETLELAKALEDAGASALTVHGR 160 (231)
T ss_pred HHHHHHHHHHHhCCCEEEECCC
Confidence 6788889999999999999654
No 113
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=96.43 E-value=0.22 Score=48.87 Aligned_cols=173 Identities=14% Similarity=0.181 Sum_probs=103.9
Q ss_pred ChH-HHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHH
Q 012478 98 DAL-SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIK 176 (462)
Q Consensus 98 Dal-SArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~ 176 (462)
|+. .|+..++.|++.+++--+-- + .|.+ ...+..+.|++.+++||.++ .|..+. +-++++..
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~--~-~g~~--------~n~~~i~~i~~~~~~pv~vg--GGirs~----edv~~~l~ 95 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDA--A-FGRG--------SNRELLAEVVGKLDVKVELS--GGIRDD----ESLEAALA 95 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEeccc--c-CCCC--------ccHHHHHHHHHHcCCCEEEc--CCCCCH----HHHHHHHH
Confidence 544 35667789999999986441 1 2433 23467788888889999876 344453 44567778
Q ss_pred hCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEE--EEecchhhcc----cHHHHHHHHHHhH
Q 012478 177 AGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVI--VARTDSRQAL----SLEESLRRSRAFA 250 (462)
Q Consensus 177 AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vI--iARTDA~~~~----gldeAI~RakAy~ 250 (462)
+||.-+.+ +.. .+-+++ ++.++.... . ..+++ -.|....... ...+.++-++.+.
T Consensus 96 ~Ga~kvvi-Gs~-----------~l~~p~-l~~~i~~~~--~----~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~ 156 (241)
T PRK14024 96 TGCARVNI-GTA-----------ALENPE-WCARVIAEH--G----DRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLD 156 (241)
T ss_pred CCCCEEEE-Cch-----------HhCCHH-HHHHHHHHh--h----hhEEEEEEEeccEeccCCeeecCccHHHHHHHHH
Confidence 99998776 221 122333 333332211 1 11111 1111000001 1134567788899
Q ss_pred hcCCcEEEecCCC--------CHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhc------CCCEEeccchHH
Q 012478 251 DAGADVLFIDALA--------SKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEEL------GFKLVAYPLSLI 314 (462)
Q Consensus 251 eAGAD~Ifie~~~--------s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~l------Gv~~V~yp~~ll 314 (462)
++||+.+.++.+. +.+.++++++.++ +|+.+| ||- .+.+++.++ |+.-|+.+..++
T Consensus 157 ~~G~~~iiv~~~~~~g~~~G~d~~~i~~i~~~~~-ipvias----GGi---~s~~D~~~l~~~~~~GvdgV~igra~~ 226 (241)
T PRK14024 157 SAGCSRYVVTDVTKDGTLTGPNLELLREVCARTD-APVVAS----GGV---SSLDDLRALAELVPLGVEGAIVGKALY 226 (241)
T ss_pred hcCCCEEEEEeecCCCCccCCCHHHHHHHHhhCC-CCEEEe----CCC---CCHHHHHHHhhhccCCccEEEEeHHHH
Confidence 9999999998763 4688899988765 676654 342 366776553 999998876544
No 114
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=96.42 E-value=0.2 Score=49.48 Aligned_cols=175 Identities=17% Similarity=0.201 Sum_probs=100.9
Q ss_pred Ch-HHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHH
Q 012478 98 DA-LSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIK 176 (462)
Q Consensus 98 Da-lSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~ 176 (462)
|+ -.|+.+++.|++.+++...--+ + . .-...++.++.|++.+++||+++. |..+... ++++..
T Consensus 31 dp~~~a~~~~~~G~~~l~v~Dl~~~----~--~----~~~~n~~~i~~i~~~~~~pv~~~G--Gi~s~~d----~~~~~~ 94 (254)
T TIGR00735 31 DPVELAQRYDEEGADELVFLDITAS----S--E----GRTTMIDVVERTAETVFIPLTVGG--GIKSIED----VDKLLR 94 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCcc----c--c----cChhhHHHHHHHHHhcCCCEEEEC--CCCCHHH----HHHHHH
Confidence 55 4567888899999999854321 1 0 111346677888888899999883 3334333 346667
Q ss_pred hCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCe------------------EEEEecchhhccc
Q 012478 177 AGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDI------------------VIVARTDSRQALS 238 (462)
Q Consensus 177 AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~------------------vIiARTDA~~~~g 238 (462)
+||.+|.| +.. .+.++ +++.++.... |.+- .|.-|.-- ...
T Consensus 95 ~Ga~~viv-gt~-----------~~~~p-~~~~~~~~~~------~~~~iv~slD~~~g~~~~~~~~~v~i~gw~--~~~ 153 (254)
T TIGR00735 95 AGADKVSI-NTA-----------AVKNP-ELIYELADRF------GSQCIVVAIDAKRVYVNSYCWYEVYIYGGR--EST 153 (254)
T ss_pred cCCCEEEE-Chh-----------HhhCh-HHHHHHHHHc------CCCCEEEEEEeccCCCCCCccEEEEEeCCc--ccC
Confidence 89999987 321 01122 2333332211 1111 12112111 111
Q ss_pred HHHHHHHHHHhHhcCCcEEEecCCCC--------HHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcC-CCEEec
Q 012478 239 LEESLRRSRAFADAGADVLFIDALAS--------KEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELG-FKLVAY 309 (462)
Q Consensus 239 ldeAI~RakAy~eAGAD~Ifie~~~s--------~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lG-v~~V~y 309 (462)
-.+.++-++.+.++|+|.|.+..+.. .+.++++.+.++ +|+.++ ||-.-.-..+++.+.| +.-|+.
T Consensus 154 ~~~~~~~~~~l~~~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~~~-ipvia~----GGi~s~~di~~~~~~g~~dgv~~ 228 (254)
T TIGR00735 154 GLDAVEWAKEVEKLGAGEILLTSMDKDGTKSGYDLELTKAVSEAVK-IPVIAS----GGAGKPEHFYEAFTKGKADAALA 228 (254)
T ss_pred CCCHHHHHHHHHHcCCCEEEEeCcCcccCCCCCCHHHHHHHHHhCC-CCEEEe----CCCCCHHHHHHHHHcCCcceeeE
Confidence 23457788889999999998866532 467788888764 565543 3432112445666677 888877
Q ss_pred cchHH
Q 012478 310 PLSLI 314 (462)
Q Consensus 310 p~~ll 314 (462)
+..+.
T Consensus 229 g~a~~ 233 (254)
T TIGR00735 229 ASVFH 233 (254)
T ss_pred hHHHh
Confidence 66544
No 115
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=96.39 E-value=0.058 Score=56.57 Aligned_cols=109 Identities=18% Similarity=0.133 Sum_probs=75.2
Q ss_pred HHHHHhhcCCcEEEeCC--CCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHH
Q 012478 142 GQLITQAVSIPVIGDGD--NGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARK 219 (462)
Q Consensus 142 ~~~I~ra~~iPVIaD~D--tGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~ 219 (462)
+|++....+-|+++=+= .+-=++....+.+..+++.|+++|+. |. .++..+..|.+|-+..++.+++...
T Consensus 121 ~R~~~gv~~rPli~Ti~kp~~gld~~~la~~~~~l~~gGvD~Ikd-de-------~~ge~~~~~~eER~~~v~~av~~a~ 192 (367)
T cd08205 121 LRRLLGVHDRPLLGTIIKPSIGLSPEELAELAYELALGGIDLIKD-DE-------LLADQPYAPFEERVRACMEAVRRAN 192 (367)
T ss_pred HHHHhCCCCCCeeeeeeCCCCCCCHHHHHHHHHHHHhcCCCeeec-cc-------cccCcccCCHHHHHHHHHHHHHHHH
Confidence 56666666777765422 22126788999999999999999986 32 3455667788877777666665543
Q ss_pred -hhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEecCC
Q 012478 220 -ESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDAL 262 (462)
Q Consensus 220 -~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~~ 262 (462)
+.|...++++-..+ ..+|+++|++..+++|||++++--+
T Consensus 193 ~~TG~~~~y~~nit~----~~~e~i~~a~~a~~~Gad~vmv~~~ 232 (367)
T cd08205 193 EETGRKTLYAPNITG----DPDELRRRADRAVEAGANALLINPN 232 (367)
T ss_pred HhhCCcceEEEEcCC----CHHHHHHHHHHHHHcCCCEEEEecc
Confidence 33433444444332 2489999999999999999998654
No 116
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=96.39 E-value=0.0063 Score=62.01 Aligned_cols=148 Identities=24% Similarity=0.306 Sum_probs=89.0
Q ss_pred CcEEEeCCCCCC-CHHHHHHHHHHHHHhCccEEEeCCCC-CCCCCCCCCCCccc-CHHHHHHHHHHHHHHHHhhCCCeEE
Q 012478 151 IPVIGDGDNGYG-NAMNVKRTVKGYIKAGFAGIILEDQV-SPKGCGHTRGRKVV-SREEAVMRIKAAVDARKESGSDIVI 227 (462)
Q Consensus 151 iPVIaD~DtGyG-~~~nv~rtVk~l~~AGaaGI~IEDq~-~PKrCGH~~gk~Lv-p~ee~~~kI~AA~~Ar~~~g~d~vI 227 (462)
.|+++=+ +| ++....++++.+.+.|+++|.|-=+. .||.+.+..|-.|+ .++.+.+-|++++++. +..+-+
T Consensus 54 ~p~~~Ql---~g~~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~---~~pvsv 127 (309)
T PF01207_consen 54 RPLIVQL---FGNDPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAV---PIPVSV 127 (309)
T ss_dssp -TEEEEE---E-S-HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH----SSEEEE
T ss_pred cceeEEE---eeccHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhccc---ccceEE
Confidence 5777764 34 57889999998888899999997775 23333333444554 5565666666666553 234555
Q ss_pred EEecchhhcccHHHHHHHHHHhHhcCCcEEEecC---------CCCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHH
Q 012478 228 VARTDSRQALSLEESLRRSRAFADAGADVLFIDA---------LASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLE 298 (462)
Q Consensus 228 iARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~---------~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~e 298 (462)
--|+--. .+.++.++-++.+.++|++.|.||+ ..+-+.++++.+.++ +|+.+| |+ ..+.++
T Consensus 128 KiR~g~~--~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~-ipvi~N----Gd---I~s~~d 197 (309)
T PF01207_consen 128 KIRLGWD--DSPEETIEFARILEDAGVSAITVHGRTRKQRYKGPADWEAIAEIKEALP-IPVIAN----GD---IFSPED 197 (309)
T ss_dssp EEESECT----CHHHHHHHHHHHHTT--EEEEECS-TTCCCTS---HHHHHHCHHC-T-SEEEEE----SS-----SHHH
T ss_pred ecccccc--cchhHHHHHHHHhhhcccceEEEecCchhhcCCcccchHHHHHHhhccc-ceeEEc----Cc---cCCHHH
Confidence 5554221 2357789999999999999999998 456788899999887 788877 23 346655
Q ss_pred HHhc----CCCEEeccchHH
Q 012478 299 LEEL----GFKLVAYPLSLI 314 (462)
Q Consensus 299 L~~l----Gv~~V~yp~~ll 314 (462)
..++ |+.-|..+-.++
T Consensus 198 ~~~~~~~tg~dgvMigRgal 217 (309)
T PF01207_consen 198 AERMLEQTGADGVMIGRGAL 217 (309)
T ss_dssp HHHHCCCH-SSEEEESHHHC
T ss_pred HHHHHHhcCCcEEEEchhhh
Confidence 5443 888887765543
No 117
>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=96.37 E-value=0.19 Score=51.38 Aligned_cols=151 Identities=15% Similarity=0.144 Sum_probs=106.4
Q ss_pred eeccccc-CCCccccccCchHHHHHHHHhCCCceEecccCChHHHHHHHHhCCcEEEeccHHHHhh-------hccCC--
Q 012478 59 NRTRVYR-KNSTGVEACLSPAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAA-------RLALP-- 128 (462)
Q Consensus 59 ~~~R~y~-rgs~~~~~a~~~a~~LR~ll~~~~~iv~p~ayDalSArl~e~aGfdaI~vSG~avSas-------~lG~P-- 128 (462)
.++++|+ || +.++ +.-+-|++..++-+.-++-.++|.-.+..+.+. .|.+.++.+-+=.+ ..|.|
T Consensus 60 pRTSp~sFrG-~G~e---eGL~iL~~vk~~~glpvvTeV~~~~q~~~vae~-~DilQIgAr~~rqtdLL~a~~~tgkpV~ 134 (290)
T PLN03033 60 NRTSSKSFRG-PGMA---EGLKILEKVKVAYDLPIVTDVHESSQCEAVGKV-ADIIQIPAFLCRQTDLLVAAAKTGKIIN 134 (290)
T ss_pred CCCCCCCCCC-CCHH---HHHHHHHHHHHHHCCceEEeeCCHHHHHHHHhh-CcEEeeCcHHHHHHHHHHHHHccCCeEE
Confidence 5667886 44 2222 445677777777777788899999999999887 79999996544222 22433
Q ss_pred --CCCCCCHHHHHHHHHHHHhh-------------------------------cCCcEEEeCCCC---------------
Q 012478 129 --DTGFISYGEMVDQGQLITQA-------------------------------VSIPVIGDGDNG--------------- 160 (462)
Q Consensus 129 --D~g~vsl~Eml~~~~~I~ra-------------------------------~~iPVIaD~DtG--------------- 160 (462)
-....+.+||+..++.|... +++|||+|.=++
T Consensus 135 lKkGq~~t~~e~~~aaeki~~~GN~~viLcERG~tFgy~~lv~D~r~ip~mk~~~lPVI~DpSHsvQ~pg~~~~~~~g~~ 214 (290)
T PLN03033 135 IKKGQFCAPSVMRNSAEKVRLAGNPNVMVCERGTMFGYNDLIVDPRNLEWMREANCPVVADITHSLQQPAGKKLDGGGVA 214 (290)
T ss_pred eCCCCCCCHHHHHHHHHHHHHcCCCcEEEEeCCCCcCCCCcccchhhhHHHHhcCCCEEEeCCccccCCCcccccccCCC
Confidence 33568899999998887531 468999999884
Q ss_pred -CCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHH
Q 012478 161 -YGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAV 215 (462)
Q Consensus 161 -yG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~ 215 (462)
-|.-+-|.-..+..+.+|++|+.||=-..|.+ .-.+|...++.+++..-++.++
T Consensus 215 s~G~Re~V~~larAAvA~GaDGlfiEvHpdP~~-AlsDg~q~l~~~~l~~ll~~l~ 269 (290)
T PLN03033 215 SGGLRELIPCIARTAVAVGVDGIFMEVHDDPLS-APVDGPTQWPLRHLEELLEELI 269 (290)
T ss_pred CCCCHHHHHHHHHHHHHhCCCEEEEEecCCccc-cCCCcccCcCHHHHHHHHHHHH
Confidence 24556788888899999999999997655532 3446777777766554444443
No 118
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=96.36 E-value=0.083 Score=54.68 Aligned_cols=152 Identities=21% Similarity=0.220 Sum_probs=89.8
Q ss_pred HHHHHHHHHHhCccEEEeCCC-----------CCCCCCCCCCCCccc-CHHHHHHHHHHHHHHHHhhCCCeEEEEecchh
Q 012478 167 VKRTVKGYIKAGFAGIILEDQ-----------VSPKGCGHTRGRKVV-SREEAVMRIKAAVDARKESGSDIVIVARTDSR 234 (462)
Q Consensus 167 v~rtVk~l~~AGaaGI~IEDq-----------~~PKrCGH~~gk~Lv-p~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~ 234 (462)
..+.++...++|.+||.|-.. ...||...-+|- +. -.....+-|++++++ .|++|.|.-|....
T Consensus 139 f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGs-lenR~r~~~eiv~aIR~~---vG~d~~v~iRi~~~ 214 (353)
T cd02930 139 FARCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGS-FENRMRFPVEIVRAVRAA---VGEDFIIIYRLSML 214 (353)
T ss_pred HHHHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCC-HHHHhHHHHHHHHHHHHH---cCCCceEEEEeccc
Confidence 345567778899999999442 124555555553 22 123334444444443 47789888886542
Q ss_pred ----hcccHHHHHHHHHHhHhcCCcEEEec-----CC-C----------CHHHHHHHHHhCCCCceeeeeeecCCC-CCC
Q 012478 235 ----QALSLEESLRRSRAFADAGADVLFID-----AL-A----------SKEEMKAFCEISPLVPKMANMLEGGGK-TPI 293 (462)
Q Consensus 235 ----~~~gldeAI~RakAy~eAGAD~Ifie-----~~-~----------s~eei~~i~~~v~~vP~~~N~l~~~g~-tP~ 293 (462)
...+++|+++-++.++++|+|.|-+- .. + ..+.++++.+.++ +|+..| ++- +|
T Consensus 215 D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~-iPVi~~----G~i~~~- 288 (353)
T cd02930 215 DLVEGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVD-IPVIAS----NRINTP- 288 (353)
T ss_pred ccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCC-CCEEEc----CCCCCH-
Confidence 22478999999999999999999772 11 1 1233566666665 676643 121 12
Q ss_pred CCHHHHHhcC-CCEEeccchHHHHHHHHHHHHHHHHHcCCC
Q 012478 294 LNPLELEELG-FKLVAYPLSLIGVSVRAMQDALTAIKGGRI 333 (462)
Q Consensus 294 ls~~eL~~lG-v~~V~yp~~ll~aa~~Am~~~l~~l~~g~~ 333 (462)
-..+++-+-| +..|.++-.++. --+....+++|..
T Consensus 289 ~~a~~~i~~g~~D~V~~gR~~l~-----dP~~~~k~~~g~~ 324 (353)
T cd02930 289 EVAERLLADGDADMVSMARPFLA-----DPDFVAKAAAGRA 324 (353)
T ss_pred HHHHHHHHCCCCChhHhhHHHHH-----CccHHHHHHhCCc
Confidence 1344444444 777766554433 3355666777653
No 119
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=96.34 E-value=0.076 Score=53.45 Aligned_cols=153 Identities=15% Similarity=0.117 Sum_probs=86.9
Q ss_pred HHHHHHHhC-CcEEEec-cHHHHhhhcc-CCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHHh
Q 012478 101 SAKLVEKSG-FSFCFTS-GFSISAARLA-LPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKA 177 (462)
Q Consensus 101 SArl~e~aG-fdaI~vS-G~avSas~lG-~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~A 177 (462)
.|+.++++| ||+|=+- |.-. ...| +.. .-..+.+.+.++.|.+.+++||++-+-.. ..++.+.++.++++
T Consensus 109 ~a~~~~~aG~~D~iElN~~cP~--~~~gg~~~--~~~~~~~~eiv~~vr~~~~~pv~vKl~~~---~~~~~~~a~~l~~~ 181 (301)
T PRK07259 109 VAEKLSKAPNVDAIELNISCPN--VKHGGMAF--GTDPELAYEVVKAVKEVVKVPVIVKLTPN---VTDIVEIAKAAEEA 181 (301)
T ss_pred HHHHHhccCCcCEEEEECCCCC--CCCCcccc--ccCHHHHHHHHHHHHHhcCCCEEEEcCCC---chhHHHHHHHHHHc
Confidence 467778888 9999764 2111 1121 111 12456677778888888899999998632 34667788899999
Q ss_pred CccEEEeCCCCC----------C---CCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHH
Q 012478 178 GFAGIILEDQVS----------P---KGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLR 244 (462)
Q Consensus 178 GaaGI~IEDq~~----------P---KrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~ 244 (462)
|++||.+-.... | ..+|...|..+.|. ..+.++.++++ .+.+++.+++-.. -+
T Consensus 182 G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~--~l~~v~~i~~~---~~ipvi~~GGI~~---------~~ 247 (301)
T PRK07259 182 GADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPI--ALRMVYQVYQA---VDIPIIGMGGISS---------AE 247 (301)
T ss_pred CCCEEEEEccccccccccccCceeecCCcCccCCcCcccc--cHHHHHHHHHh---CCCCEEEECCCCC---------HH
Confidence 999998743210 1 12233344444443 23333333332 1234444444322 22
Q ss_pred HHHHhHhcCCcEEEecC--CCCHHHHHHHHHh
Q 012478 245 RSRAFADAGADVLFIDA--LASKEEMKAFCEI 274 (462)
Q Consensus 245 RakAy~eAGAD~Ifie~--~~s~eei~~i~~~ 274 (462)
.+..+.++|||+|.+-. +.+++.+.++.+.
T Consensus 248 da~~~l~aGAd~V~igr~ll~~P~~~~~i~~~ 279 (301)
T PRK07259 248 DAIEFIMAGASAVQVGTANFYDPYAFPKIIEG 279 (301)
T ss_pred HHHHHHHcCCCceeEcHHHhcCcHHHHHHHHH
Confidence 45666679999998732 2345566665554
No 120
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=96.33 E-value=0.59 Score=48.28 Aligned_cols=188 Identities=15% Similarity=0.167 Sum_probs=99.1
Q ss_pred ChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHh-hcCCcEEEeCCC---CCCCHHHHHHHHHH
Q 012478 98 DALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQ-AVSIPVIGDGDN---GYGNAMNVKRTVKG 173 (462)
Q Consensus 98 DalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~r-a~~iPVIaD~Dt---GyG~~~nv~rtVk~ 173 (462)
..--|+.++++|.... +++..+ ++.|-. .....+.+.+ ..++|+++-.-. ..++...+.+.+++
T Consensus 72 n~~La~~a~~~g~~~~-~Gs~~~-----~~~~~~------~~~~~~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~ 139 (333)
T TIGR02151 72 NRNLARAARELGIPMG-VGSQRA-----ALKDPE------TADTFEVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDM 139 (333)
T ss_pred HHHHHHHHHHcCCCeE-EcCchh-----hccChh------hHhHHHHHHHhCCCCcEEeecCchhhccccHHHHHHHHHH
Confidence 3344567778887544 444222 233311 2222233444 568999986522 11224456666655
Q ss_pred HHHhCccEEEeCC-CCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhc
Q 012478 174 YIKAGFAGIILED-QVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADA 252 (462)
Q Consensus 174 l~~AGaaGI~IED-q~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eA 252 (462)
+ ++.+-.+|+.- |......|+. +.+...+.|+++++.- +.+++|--. . .+ -..+-|+.+.++
T Consensus 140 i-~adal~i~ln~~q~~~~p~g~~------~f~~~le~i~~i~~~~---~vPVivK~~-g----~g--~~~~~a~~L~~a 202 (333)
T TIGR02151 140 I-EADALAIHLNVLQELVQPEGDR------NFKGWLEKIAEICSQL---SVPVIVKEV-G----FG--ISKEVAKLLADA 202 (333)
T ss_pred h-cCCCEEEcCcccccccCCCCCc------CHHHHHHHHHHHHHhc---CCCEEEEec-C----CC--CCHHHHHHHHHc
Confidence 4 67777777621 2111112221 2344567777777653 234443311 1 11 135678899999
Q ss_pred CCcEEEecCCC---------------------------CHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcCCC
Q 012478 253 GADVLFIDALA---------------------------SKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFK 305 (462)
Q Consensus 253 GAD~Ifie~~~---------------------------s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~ 305 (462)
|+|+|.+.+-. ..+.+.++.+....+|+. ..||-.-.......-.+|.+
T Consensus 203 Gvd~I~Vsg~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipVI----asGGI~~~~di~kaLalGAd 278 (333)
T TIGR02151 203 GVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRSDAPDAPII----ASGGLRTGLDVAKAIALGAD 278 (333)
T ss_pred CCCEEEECCCCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHhcCCCCeEE----EECCCCCHHHHHHHHHhCCC
Confidence 99999997631 112223333211123433 33453333456667779999
Q ss_pred EEeccchHHHHHH
Q 012478 306 LVAYPLSLIGVSV 318 (462)
Q Consensus 306 ~V~yp~~ll~aa~ 318 (462)
.|.++..++.+++
T Consensus 279 ~V~igr~~L~~~~ 291 (333)
T TIGR02151 279 AVGMARPFLKAAL 291 (333)
T ss_pred eehhhHHHHHHHH
Confidence 9999999888776
No 121
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=96.31 E-value=1.8 Score=45.52 Aligned_cols=224 Identities=15% Similarity=0.150 Sum_probs=141.6
Q ss_pred HHHHHHHhCCCceEecccCChHHHHH----HHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcC-CcE
Q 012478 79 KSLRQILELPGVHQGPACFDALSAKL----VEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVS-IPV 153 (462)
Q Consensus 79 ~~LR~ll~~~~~iv~p~ayDalSArl----~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~-iPV 153 (462)
+-|....+.+-.+-+.||||.-+++. +|+.+.+.|+.-+-+.. .+ ..++.+...++..++... +||
T Consensus 8 ~lL~~A~~~~yAVgAfN~~n~e~~~avi~AAee~~sPvIiq~s~~~~----~~-----~g~~~~~~~~~~~a~~~~~VPV 78 (347)
T PRK09196 8 QLLDHAAEHGYGVPAFNVNNLEQVQAIMEAADETDSPVILQASAGAR----KY-----AGEPFLRHLILAAVEEYPHIPV 78 (347)
T ss_pred HHHHHHHHcCceEEEeeeCCHHHHHHHHHHHHHhCCCEEEECCccHh----hh-----CCHHHHHHHHHHHHHhCCCCcE
Confidence 44555556666688999999999865 46678998887653321 12 224456666777776664 999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCC-CCCcccCHHHHHHHHHHHHHHHHhhCC----CeEEE
Q 012478 154 IGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHT-RGRKVVSREEAVMRIKAAVDARKESGS----DIVIV 228 (462)
Q Consensus 154 IaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~-~gk~Lvp~ee~~~kI~AA~~Ar~~~g~----d~vIi 228 (462)
.+=.|+|. +.+ .+++.+++|...|.|... |. +++.-.|.||=+++-+.+++.+...|. ++=-+
T Consensus 79 alHLDHg~-~~e----~i~~ai~~GftSVMiDgS-------~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~VEaELG~v 146 (347)
T PRK09196 79 VMHQDHGN-SPA----TCQRAIQLGFTSVMMDGS-------LKADGKTPASYEYNVDVTRKVVEMAHACGVSVEGELGCL 146 (347)
T ss_pred EEECCCCC-CHH----HHHHHHHcCCCEEEecCC-------CCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeec
Confidence 99999994 333 456677899999999443 33 234456888888888888877664331 11111
Q ss_pred Eec--------chhhccc---HH---HHHHHHHHhH-hcCCcEEEe-----cCC-----------CCHHHHHHHHHhCCC
Q 012478 229 ART--------DSRQALS---LE---ESLRRSRAFA-DAGADVLFI-----DAL-----------ASKEEMKAFCEISPL 277 (462)
Q Consensus 229 ART--------DA~~~~g---ld---eAI~RakAy~-eAGAD~Ifi-----e~~-----------~s~eei~~i~~~v~~ 277 (462)
+-. |...... .+ ---+.|+.|. +.|+|++-+ ++. -+.+.+++|.+.++.
T Consensus 147 gg~e~~~~g~~~~~~~~~~~~~~~~~T~PeeA~~Fv~~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~~ 226 (347)
T PRK09196 147 GSLETGMGGEEDGHGAEGKLSHDQLLTDPEEAADFVKKTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLPN 226 (347)
T ss_pred cCccccccccccCcccccccchhhcCCCHHHHHHHHHHhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCCC
Confidence 111 1100000 00 0134566677 479998753 332 134578888888754
Q ss_pred CceeeeeeecCCCCC------------------CCCHHHH---HhcCCCEEeccchHHHHHHHHHHHHHH
Q 012478 278 VPKMANMLEGGGKTP------------------ILNPLEL---EELGFKLVAYPLSLIGVSVRAMQDALT 326 (462)
Q Consensus 278 vP~~~N~l~~~g~tP------------------~ls~~eL---~~lGv~~V~yp~~ll~aa~~Am~~~l~ 326 (462)
+|+ ++.|+..+| .++.+++ -++|++-|-+..-+..+...++++.+.
T Consensus 227 vPL---VLHGgSG~~~~~~~~~~~~g~~~~~~~G~~~e~i~~ai~~GI~KINi~Tdl~~a~~~~i~~~~~ 293 (347)
T PRK09196 227 THL---VMHGSSSVPQELLDIINEYGGDMPETYGVPVEEIQEGIKHGVRKVNIDTDLRLAMTGAIRRFLA 293 (347)
T ss_pred CCE---EEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCceEEeChHHHHHHHHHHHHHHH
Confidence 675 456543332 1244554 578999999999999999999988864
No 122
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=96.31 E-value=0.11 Score=53.35 Aligned_cols=139 Identities=19% Similarity=0.213 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhCccEEEeCCCC--------CC---CCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchh-
Q 012478 167 VKRTVKGYIKAGFAGIILEDQV--------SP---KGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSR- 234 (462)
Q Consensus 167 v~rtVk~l~~AGaaGI~IEDq~--------~P---KrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~- 234 (462)
..+.+++..++|++||.|--.- .| +|-..-+|.-.-..+...+.|++++++ .|+||.|..|.-..
T Consensus 156 ~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~---vG~d~~v~vri~~~~ 232 (336)
T cd02932 156 FVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAV---WPEDKPLFVRISATD 232 (336)
T ss_pred HHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHH---cCCCceEEEEEcccc
Confidence 4455677788999999996431 12 222122232111233444555555544 46788888884421
Q ss_pred ---hcccHHHHHHHHHHhHhcCCcEEEecC----------C---CCHHHHHHHHHhCCCCceeeeeeecCCC-CCCCCHH
Q 012478 235 ---QALSLEESLRRSRAFADAGADVLFIDA----------L---ASKEEMKAFCEISPLVPKMANMLEGGGK-TPILNPL 297 (462)
Q Consensus 235 ---~~~gldeAI~RakAy~eAGAD~Ifie~----------~---~s~eei~~i~~~v~~vP~~~N~l~~~g~-tP~ls~~ 297 (462)
....++++++-+++++++|.|.|=+.. . ...+.++++.+.++ +|++.+ ++- +| -..+
T Consensus 233 ~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~-iPVi~~----G~i~t~-~~a~ 306 (336)
T cd02932 233 WVEGGWDLEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQEAG-IPVIAV----GLITDP-EQAE 306 (336)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhhCC-CCEEEe----CCCCCH-HHHH
Confidence 233589999999999999999876421 1 12356667777765 676543 222 22 1345
Q ss_pred HHHhcC-CCEEeccchHH
Q 012478 298 ELEELG-FKLVAYPLSLI 314 (462)
Q Consensus 298 eL~~lG-v~~V~yp~~ll 314 (462)
++-+.| ++.|.++-.++
T Consensus 307 ~~l~~g~aD~V~~gR~~i 324 (336)
T cd02932 307 AILESGRADLVALGRELL 324 (336)
T ss_pred HHHHcCCCCeehhhHHHH
Confidence 555556 77777765444
No 123
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=96.29 E-value=0.7 Score=47.60 Aligned_cols=217 Identities=17% Similarity=0.187 Sum_probs=113.2
Q ss_pred hHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcC-CcEEEeCCCCC--C-CHHHHHHHHHHH
Q 012478 99 ALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVS-IPVIGDGDNGY--G-NAMNVKRTVKGY 174 (462)
Q Consensus 99 alSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~-iPVIaD~DtGy--G-~~~nv~rtVk~l 174 (462)
.--|+.+.++|. +..+++.... +-.|+ .....+.+..... .|+++-.-... + +...+.+.++.+
T Consensus 72 ~~La~~a~~~g~-~~~~Gs~~~~---~~~~e--------~~~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~ 139 (326)
T cd02811 72 RNLAEAAEELGI-AMGVGSQRAA---LEDPE--------LAESFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMI 139 (326)
T ss_pred HHHHHHHHHcCC-CeEecCchhh---ccChh--------hhhHHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhc
Confidence 344566677776 3444443321 11222 2233344445554 88877654421 1 445566555444
Q ss_pred HHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCC
Q 012478 175 IKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGA 254 (462)
Q Consensus 175 ~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGA 254 (462)
++.+--+|+.- +.......+.. +.+.+++.|+++++.. +.++++-..- . ... .+-++.+.++|+
T Consensus 140 -~adalel~l~~---~q~~~~~~~~~--df~~~~~~i~~l~~~~---~vPVivK~~g--~-g~s----~~~a~~l~~~Gv 203 (326)
T cd02811 140 -EADALAIHLNP---LQEAVQPEGDR--DFRGWLERIEELVKAL---SVPVIVKEVG--F-GIS----RETAKRLADAGV 203 (326)
T ss_pred -CCCcEEEeCcc---hHhhcCCCCCc--CHHHHHHHHHHHHHhc---CCCEEEEecC--C-CCC----HHHHHHHHHcCC
Confidence 45555555521 00111111111 2344567787777653 2344433211 1 111 456888999999
Q ss_pred cEEEecCC-----------------------------CCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcCCC
Q 012478 255 DVLFIDAL-----------------------------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFK 305 (462)
Q Consensus 255 D~Ifie~~-----------------------------~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~ 305 (462)
|+|.+.+. ++.+.+.++.+.++.+|+.+ .||-.-..+....-.+|.+
T Consensus 204 d~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~~ipIia----sGGIr~~~dv~kal~lGAd 279 (326)
T cd02811 204 KAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALPDLPLIA----SGGIRNGLDIAKALALGAD 279 (326)
T ss_pred CEEEECCCCCCcccccccccccccccccccccccccccHHHHHHHHHHHcCCCcEEE----ECCCCCHHHHHHHHHhCCC
Confidence 99997552 22345555555553355443 3453333566677778999
Q ss_pred EEeccchHHHHHHHH---HHHHHHHHHcCCCCCCCCCCCHHHHHHhcCcccHHHH
Q 012478 306 LVAYPLSLIGVSVRA---MQDALTAIKGGRIPSPGSMPSFQEIKETLGFNTYYEE 357 (462)
Q Consensus 306 ~V~yp~~ll~aa~~A---m~~~l~~l~~g~~~~~~~~~s~~e~~~lvg~~~~~~~ 357 (462)
.|.++..++.+.+.+ +...+..+++. ++.+..+.|+....++
T Consensus 280 ~V~i~~~~L~~~~~g~~~~~~~i~~~~~e----------l~~~m~~~G~~si~el 324 (326)
T cd02811 280 LVGMAGPFLKAALEGEEAVIETIEQIIEE----------LRTAMFLTGAKNLAEL 324 (326)
T ss_pred EEEEcHHHHHHHhcCHHHHHHHHHHHHHH----------HHHHHHHhCCCCHHHh
Confidence 999999888877642 23344444332 3455555666655544
No 124
>cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R.rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate.
Probab=96.28 E-value=0.23 Score=52.27 Aligned_cols=159 Identities=18% Similarity=0.173 Sum_probs=98.1
Q ss_pred HHHHHHhhcCCcEEEeCCCCCC-CHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHH
Q 012478 141 QGQLITQAVSIPVIGDGDNGYG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARK 219 (462)
Q Consensus 141 ~~~~I~ra~~iPVIaD~DtGyG-~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~ 219 (462)
-+|++....+-||+.=+=---| ++.+..+.+..+...|++.|+. |. +++.++..|.+|=+..+..+++...
T Consensus 116 g~R~~lgv~~rPl~~tiiKP~GL~~~~~a~~~~~~~~gGvD~IKd-De-------~l~~~~~~p~~eRv~~v~~av~~a~ 187 (364)
T cd08210 116 GLRALLGIPERPLLCSALKPQGLSAAELAELAYAFALGGIDIIKD-DH-------GLADQPFAPFEERVKACQEAVAEAN 187 (364)
T ss_pred HHHHHhCCCCCceEEEEeccccCCHHHHHHHHHHHHhcCCCeeec-Cc-------cccCccCCCHHHHHHHHHHHHHHHH
Confidence 3566666677888766543335 6788999999999999999976 43 2445567777766666655554433
Q ss_pred -hhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEecCCCC-HHHHHHHHHhCCCCceeeeeeecCC---CCC-C
Q 012478 220 -ESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALAS-KEEMKAFCEISPLVPKMANMLEGGG---KTP-I 293 (462)
Q Consensus 220 -~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~~~s-~eei~~i~~~v~~vP~~~N~l~~~g---~tP-~ 293 (462)
+.|......+-.-+ ..+|+++|++..+++||+++++.-+.. ..-++.+++....+|+..-- .+.| ..| .
T Consensus 188 ~eTG~~~~y~~Nita----~~~em~~ra~~a~~~Ga~~vMv~~~~~G~~~~~~l~~~~~~l~i~aHr-a~~ga~~~~~~~ 262 (364)
T cd08210 188 AETGGRTLYAPNVTG----PPTQLLERARFAKEAGAGGVLIAPGLTGLDTFRELAEDFDFLPILAHP-AFAGAFVSSGDG 262 (364)
T ss_pred hhcCCcceEEEecCC----CHHHHHHHHHHHHHcCCCEEEeecccchHHHHHHHHhcCCCcEEEEcc-ccccccccCCCc
Confidence 34443444443322 257999999999999999999876543 34566666654313433210 0001 011 1
Q ss_pred CC----HHHHHh-cCCCEEeccch
Q 012478 294 LN----PLELEE-LGFKLVAYPLS 312 (462)
Q Consensus 294 ls----~~eL~~-lGv~~V~yp~~ 312 (462)
++ ...|.+ .|+..++|++.
T Consensus 263 is~~~~~~kl~RlaGad~~~~~~~ 286 (364)
T cd08210 263 ISHALLFGTLFRLAGADAVIFPNY 286 (364)
T ss_pred ccHHHHHHHHHHHhCCCEEEeCCC
Confidence 22 344444 78888888775
No 125
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=96.26 E-value=0.1 Score=52.72 Aligned_cols=142 Identities=19% Similarity=0.195 Sum_probs=84.3
Q ss_pred HHHHHHHHhCCcEEEec-cHHHHhhhccCCCCC---CCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHH
Q 012478 100 LSAKLVEKSGFSFCFTS-GFSISAARLALPDTG---FISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYI 175 (462)
Q Consensus 100 lSArl~e~aGfdaI~vS-G~avSas~lG~PD~g---~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~ 175 (462)
-.|+.++++|+++|=+- |.-.. -+....+ .-..+.+.+.++.+.+.+++||++=+--.+ .++.+.++.++
T Consensus 117 ~~a~~~~~~gad~ielN~sCP~~---~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~~~~---~~~~~~a~~~~ 190 (299)
T cd02940 117 ELAKLVEEAGADALELNFSCPHG---MPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLTPNI---TDIREIARAAK 190 (299)
T ss_pred HHHHHHHhcCCCEEEEECCCCCC---CCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEECCCCc---hhHHHHHHHHH
Confidence 34567777898887664 32211 0111111 123456666777777778899999986533 35677788889
Q ss_pred HhCccEEEeCCCC-----------CCC-------CCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcc
Q 012478 176 KAGFAGIILEDQV-----------SPK-------GCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQAL 237 (462)
Q Consensus 176 ~AGaaGI~IEDq~-----------~PK-------rCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~ 237 (462)
++||+||.+=... .|. ..|...|+.+-|.. .+.|..++++. ++++-|++-.+-..
T Consensus 191 ~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~sG~a~~p~~--l~~v~~~~~~~---~~~ipIig~GGI~~-- 263 (299)
T cd02940 191 EGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGYSGPAVKPIA--LRAVSQIARAP---EPGLPISGIGGIES-- 263 (299)
T ss_pred HcCCCEEEEecccccccccccccCCccccccCCCCcCcccCCCcchHH--HHHHHHHHHhc---CCCCcEEEECCCCC--
Confidence 9999999753211 011 23334566665542 33444443332 24688888766543
Q ss_pred cHHHHHHHHHHhHhcCCcEEEe
Q 012478 238 SLEESLRRSRAFADAGADVLFI 259 (462)
Q Consensus 238 gldeAI~RakAy~eAGAD~Ifi 259 (462)
.+ .+..|..+|||+|.+
T Consensus 264 -~~----da~~~l~aGA~~V~i 280 (299)
T cd02940 264 -WE----DAAEFLLLGASVVQV 280 (299)
T ss_pred -HH----HHHHHHHcCCChheE
Confidence 23 355566799999886
No 126
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=96.24 E-value=0.65 Score=46.38 Aligned_cols=173 Identities=18% Similarity=0.198 Sum_probs=103.6
Q ss_pred HHHHHHhCCcEEEec-cHHHHhhhccCCC------------CCCCCHHHHHHHHHHHHhh-cCCcEEEeCCCCCCCHH--
Q 012478 102 AKLVEKSGFSFCFTS-GFSISAARLALPD------------TGFISYGEMVDQGQLITQA-VSIPVIGDGDNGYGNAM-- 165 (462)
Q Consensus 102 Arl~e~aGfdaI~vS-G~avSas~lG~PD------------~g~vsl~Eml~~~~~I~ra-~~iPVIaD~DtGyG~~~-- 165 (462)
++.++++|+|.|=++ -+. -.+.| ..-+++++.++.++.|++. .++|++ =.+|-|+.
T Consensus 30 ~~~l~~~Gad~iElGiPfs-----DP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv---~m~Y~Npi~~ 101 (256)
T TIGR00262 30 IKTLIEAGADALELGVPFS-----DPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIG---LLTYYNLIFR 101 (256)
T ss_pred HHHHHHcCCCEEEECCCCC-----CCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEE---EEEeccHHhh
Confidence 355667899988776 221 11222 2347888999999999876 689986 33577862
Q ss_pred -HHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeE-EEEecchhhcccHHHHH
Q 012478 166 -NVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIV-IVARTDSRQALSLEESL 243 (462)
Q Consensus 166 -nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~v-IiARTDA~~~~gldeAI 243 (462)
.+.+-++.+.++|++||.|=|- |.+|..+-+.++++. |.+.+ +++=+-. .
T Consensus 102 ~G~e~f~~~~~~aGvdgviipDl---------------p~ee~~~~~~~~~~~----gl~~i~lv~P~T~---------~ 153 (256)
T TIGR00262 102 KGVEEFYAKCKEVGVDGVLVADL---------------PLEESGDLVEAAKKH----GVKPIFLVAPNAD---------D 153 (256)
T ss_pred hhHHHHHHHHHHcCCCEEEECCC---------------ChHHHHHHHHHHHHC----CCcEEEEECCCCC---------H
Confidence 3566688999999999999774 335544444333332 44443 3333221 3
Q ss_pred HHHHHhHhcCCcEEEe---cCCC---------CHHHHHHHHHhCCCCceeeeeeecCCC-CCCCCHHHHHhcCCCEEecc
Q 012478 244 RRSRAFADAGADVLFI---DALA---------SKEEMKAFCEISPLVPKMANMLEGGGK-TPILNPLELEELGFKLVAYP 310 (462)
Q Consensus 244 ~RakAy~eAGAD~Ifi---e~~~---------s~eei~~i~~~v~~vP~~~N~l~~~g~-tP~ls~~eL~~lGv~~V~yp 310 (462)
+|.+.+.+..-..|++ .+.. ..+.++++.+..+ .|+. +.+ |- +| -+..++.++|..-|+.|
T Consensus 154 eri~~i~~~~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~-~pi~---vgf-GI~~~-e~~~~~~~~GADgvVvG 227 (256)
T TIGR00262 154 ERLKQIAEKSQGFVYLVSRAGVTGARNRAASALNELVKRLKAYSA-KPVL---VGF-GISKP-EQVKQAIDAGADGVIVG 227 (256)
T ss_pred HHHHHHHHhCCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcC-CCEE---EeC-CCCCH-HHHHHHHHcCCCEEEEC
Confidence 4677777665545655 2221 1233444444332 3432 233 43 23 25677888999999999
Q ss_pred chHHHH
Q 012478 311 LSLIGV 316 (462)
Q Consensus 311 ~~ll~a 316 (462)
+.+++.
T Consensus 228 Saiv~~ 233 (256)
T TIGR00262 228 SAIVKI 233 (256)
T ss_pred HHHHHH
Confidence 987653
No 127
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=96.20 E-value=0.32 Score=52.55 Aligned_cols=289 Identities=19% Similarity=0.199 Sum_probs=151.2
Q ss_pred HHHHHHHHhCCcEEEeccHHHHhh--hccCCCCCCCCHHHHHHHHHHHHhh-cCCcEE--EeCCC--CCCC-HHH-HHHH
Q 012478 100 LSAKLVEKSGFSFCFTSGFSISAA--RLALPDTGFISYGEMVDQGQLITQA-VSIPVI--GDGDN--GYGN-AMN-VKRT 170 (462)
Q Consensus 100 lSArl~e~aGfdaI~vSG~avSas--~lG~PD~g~vsl~Eml~~~~~I~ra-~~iPVI--aD~Dt--GyG~-~~n-v~rt 170 (462)
--|..+.++||+.|=++|.+.-.+ +.-.|| -.|.+ +.+.+. .+.++. +-..+ ||.. +.+ +.+.
T Consensus 30 ~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~~e~-----p~e~l---~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~ 101 (448)
T PRK12331 30 PILEKLDNAGYHSLEMWGGATFDACLRFLNED-----PWERL---RKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESF 101 (448)
T ss_pred HHHHHHHHcCCCEEEecCCccchhhhccCCCC-----HHHHH---HHHHHhCCCCEEEEEeccccccccccCchhhHHHH
Confidence 445677889999998863221111 112233 23333 444443 345554 66655 6765 455 4556
Q ss_pred HHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCe-EEEEecchhhcccHHHHHHHHHHh
Q 012478 171 VKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDI-VIVARTDSRQALSLEESLRRSRAF 249 (462)
Q Consensus 171 Vk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~-vIiARTDA~~~~gldeAI~RakAy 249 (462)
+++..++|+.-|+|-|... + .+ .++.+++..++.|... +-+.=|++ ....++-.++.++.+
T Consensus 102 v~~A~~~Gvd~irif~~ln-----d--------~~----n~~~~v~~ak~~G~~v~~~i~~t~~-p~~~~~~~~~~a~~l 163 (448)
T PRK12331 102 VQKSVENGIDIIRIFDALN-----D--------VR----NLETAVKATKKAGGHAQVAISYTTS-PVHTIDYFVKLAKEM 163 (448)
T ss_pred HHHHHHCCCCEEEEEEecC-----c--------HH----HHHHHHHHHHHcCCeEEEEEEeecC-CCCCHHHHHHHHHHH
Confidence 8999999999999988742 1 11 2333333444334222 11333443 235677788899999
Q ss_pred HhcCCcEEEec---CCCCHHHHHHHHHhCCC-CceeeeeeecCCCCCCCCH---HHHHhcCCCEEeccchHH--HHHHHH
Q 012478 250 ADAGADVLFID---ALASKEEMKAFCEISPL-VPKMANMLEGGGKTPILNP---LELEELGFKLVAYPLSLI--GVSVRA 320 (462)
Q Consensus 250 ~eAGAD~Ifie---~~~s~eei~~i~~~v~~-vP~~~N~l~~~g~tP~ls~---~eL~~lGv~~V~yp~~ll--~aa~~A 320 (462)
.++|||.|.+- |+-+++++.++++.+.. +++++.+ +.+ .+..+.. -.--++|++.|-.....+ ++..-+
T Consensus 164 ~~~Gad~I~i~Dt~G~l~P~~v~~lv~alk~~~~~pi~~-H~H-nt~GlA~AN~laAieaGad~vD~sv~glg~gaGN~~ 241 (448)
T PRK12331 164 QEMGADSICIKDMAGILTPYVAYELVKRIKEAVTVPLEV-HTH-ATSGIAEMTYLKAIEAGADIIDTAISPFAGGTSQPA 241 (448)
T ss_pred HHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcCCeEEE-Eec-CCCCcHHHHHHHHHHcCCCEEEeeccccCCCcCCHh
Confidence 99999999985 45566777776654321 2334433 221 2333432 334578999886655544 566667
Q ss_pred HHHHHHHHHcCCCCCCCCCCCHHHHHHhcCcccHHHHHHhhccccc-ccccccccCCCCCCCCCCcchh----hhhcCCC
Q 012478 321 MQDALTAIKGGRIPSPGSMPSFQEIKETLGFNTYYEEEKRYATSMR-RLSSENVTSNSYDTQPMAQDDT----ARRGQSS 395 (462)
Q Consensus 321 m~~~l~~l~~g~~~~~~~~~s~~e~~~lvg~~~~~~~e~~y~~~~~-~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 395 (462)
+++.+..|+..+.. ..+.++.+.++-.+ +.++.++|..... .........++|..|--.---+ +-+.+.-
T Consensus 242 tE~lv~~L~~~g~~---tgidl~~L~~~~~~--~~~~r~~y~~~~~~~~~~~~~~~~v~~~~~PGG~~snl~~ql~~~g~ 316 (448)
T PRK12331 242 TESMVAALQDLGYD---TGLDLEELSEIAEY--FNPIRDHYREEGILNPKVKDVEPKTLIYQVPGGMLSNLLSQLKEQGA 316 (448)
T ss_pred HHHHHHHHHhcCCC---CCCCHHHHHHHHHH--HHHHHHHHHhhccCCcccccCCcCeeecCCCcchHhHHHHHHHHCCc
Confidence 77777777653222 12344555444332 4555566652110 0011233555666653322222 2233444
Q ss_pred CCCeeEee--CccccccCCCCCCCCCCC
Q 012478 396 QDPIVEVI--TPEVYTNSGAGGSRDAFS 421 (462)
Q Consensus 396 ~~~~~~~~--~~~~~~~~~~~~~~~~~~ 421 (462)
.|-.-||+ .|.|-...|---.=-|||
T Consensus 317 ~~~~~~v~~e~~~v~~~lG~~~~VTP~S 344 (448)
T PRK12331 317 EDKYEEVLKEVPKVRADLGYPPLVTPLS 344 (448)
T ss_pred HhHHHHHHHHHHHHHHHcCCCCeeCChh
Confidence 45444544 134444444333334444
No 128
>PRK00208 thiG thiazole synthase; Reviewed
Probab=96.19 E-value=0.078 Score=53.15 Aligned_cols=173 Identities=17% Similarity=0.193 Sum_probs=102.0
Q ss_pred ccccCCCCCccceeecceeeeeccch--hhhhhcccCCCCceeecccccCCCccccccCchHHHHHHHHhCCCceEe-cc
Q 012478 19 LFHSNSRPSSFLGINNNTISFNKTNT--NTLLLNTATNPGTINRTRVYRKNSTGVEACLSPAKSLRQILELPGVHQG-PA 95 (462)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Pr~~~~~R~y~rgs~~~~~a~~~a~~LR~ll~~~~~iv~-p~ 95 (462)
+|-..-.++.+-+++|.+=-.+-+.. ...+.+....-+|..+.-.--...+-.+. ...-++-++|.+ .+..++ .+
T Consensus 53 ~~~~~i~~~~~~~lpNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~-~~tv~aa~~L~~-~Gf~vlpyc 130 (250)
T PRK00208 53 NLLDLLPPLGVTLLPNTAGCRTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDP-IETLKAAEILVK-EGFVVLPYC 130 (250)
T ss_pred hHHhhccccCCEECCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCH-HHHHHHHHHHHH-CCCEEEEEe
Confidence 34444445677777886544333222 12344555566787665443211111111 122334455554 457788 58
Q ss_pred cCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHH
Q 012478 96 CFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYI 175 (462)
Q Consensus 96 ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~ 175 (462)
+=|...|+.++++|.++|..-|.-+. +-. +..+ .++ .+.|.+..++|||+|+ |.+.+.++++. .
T Consensus 131 ~~d~~~ak~l~~~G~~~vmPlg~pIG-sg~-----gi~~-~~~---i~~i~e~~~vpVIvea--GI~tpeda~~A----m 194 (250)
T PRK00208 131 TDDPVLAKRLEEAGCAAVMPLGAPIG-SGL-----GLLN-PYN---LRIIIEQADVPVIVDA--GIGTPSDAAQA----M 194 (250)
T ss_pred CCCHHHHHHHHHcCCCEeCCCCcCCC-CCC-----CCCC-HHH---HHHHHHhcCCeEEEeC--CCCCHHHHHHH----H
Confidence 88999999999999999954232221 112 3223 343 5555555689999995 78888887744 4
Q ss_pred HhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHH
Q 012478 176 KAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARK 219 (462)
Q Consensus 176 ~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~ 219 (462)
+.|++||.+--... .. -++..|+++++.++.+.+
T Consensus 195 elGAdgVlV~SAIt------ka----~dP~~ma~af~~Av~aGr 228 (250)
T PRK00208 195 ELGADAVLLNTAIA------VA----GDPVAMARAFKLAVEAGR 228 (250)
T ss_pred HcCCCEEEEChHhh------CC----CCHHHHHHHHHHHHHHHH
Confidence 58999999955431 11 135677788877777765
No 129
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=96.17 E-value=0.12 Score=47.23 Aligned_cols=130 Identities=22% Similarity=0.284 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHH
Q 012478 136 GEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAV 215 (462)
Q Consensus 136 ~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~ 215 (462)
.+.+..++.++...++++++.. -++.+.++|++|+|++.... +.. .+.++
T Consensus 42 ~~~~~~i~~~~~~~~~~l~~~~------------~~~~a~~~g~~~vh~~~~~~-------------~~~-~~~~~---- 91 (196)
T cd00564 42 LELARALRELCRKYGVPLIIND------------RVDLALAVGADGVHLGQDDL-------------PVA-EARAL---- 91 (196)
T ss_pred HHHHHHHHHHHHHhCCeEEEeC------------hHHHHHHcCCCEEecCcccC-------------CHH-HHHHH----
Confidence 3445555555555678888752 13456789999999987421 111 11111
Q ss_pred HHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEecC------------CCCHHHHHHHHHhCCCCceeee
Q 012478 216 DARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDA------------LASKEEMKAFCEISPLVPKMAN 283 (462)
Q Consensus 216 ~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~------------~~s~eei~~i~~~v~~vP~~~N 283 (462)
. +.+..+-..+. . .+.++.+.++|+|.|++.. ....+.++++++... +|+.
T Consensus 92 --~---~~~~~~g~~~~-----t----~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~pv~-- 154 (196)
T cd00564 92 --L---GPDLIIGVSTH-----S----LEEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVE-IPVV-- 154 (196)
T ss_pred --c---CCCCEEEeeCC-----C----HHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhCC-CCEE--
Confidence 1 22344443332 2 2356677889999998742 233567777776533 4433
Q ss_pred eeecCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 012478 284 MLEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (462)
Q Consensus 284 ~l~~~g~tP~ls~~eL~~lGv~~V~yp~~ll~ 315 (462)
+. ||-++ -+..++.++|+..+..+..++.
T Consensus 155 a~--GGi~~-~~i~~~~~~Ga~~i~~g~~i~~ 183 (196)
T cd00564 155 AI--GGITP-ENAAEVLAAGADGVAVISAITG 183 (196)
T ss_pred EE--CCCCH-HHHHHHHHcCCCEEEEehHhhc
Confidence 22 34443 3678999999999999887664
No 130
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=96.09 E-value=0.11 Score=51.60 Aligned_cols=82 Identities=13% Similarity=0.062 Sum_probs=57.6
Q ss_pred HHHHHHHhCCcEEEec-cHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHHhCc
Q 012478 101 SAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGF 179 (462)
Q Consensus 101 SArl~e~aGfdaI~vS-G~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~AGa 179 (462)
.|+.++++|+|+|-+. |.-.. .+..+ ..-..+.+.+.++.|.+.+++||++-+-.++ +..++.+.++.++++||
T Consensus 116 ~a~~~~~~G~d~ielN~~cP~~---~~~~~-~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~-~~~~~~~~a~~l~~~Ga 190 (289)
T cd02810 116 LARKIERAGAKALELNLSCPNV---GGGRQ-LGQDPEAVANLLKAVKAAVDIPLLVKLSPYF-DLEDIVELAKAAERAGA 190 (289)
T ss_pred HHHHHHHhCCCEEEEEcCCCCC---CCCcc-cccCHHHHHHHHHHHHHccCCCEEEEeCCCC-CHHHHHHHHHHHHHcCC
Confidence 4677778899998876 31111 11122 1234556667778887778999999998765 35567888899999999
Q ss_pred cEEEeCCC
Q 012478 180 AGIILEDQ 187 (462)
Q Consensus 180 aGI~IEDq 187 (462)
++|.+-..
T Consensus 191 d~i~~~~~ 198 (289)
T cd02810 191 DGLTAINT 198 (289)
T ss_pred CEEEEEcc
Confidence 99998644
No 131
>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases. The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=96.01 E-value=2.5 Score=44.40 Aligned_cols=227 Identities=11% Similarity=-0.026 Sum_probs=135.4
Q ss_pred HHHHHHhCCCceEecccCChHHHHH----HHHhCCcEEEeccHHHHhhhccCCCCC-------CCCHHHHHHHHHHHHhh
Q 012478 80 SLRQILELPGVHQGPACFDALSAKL----VEKSGFSFCFTSGFSISAARLALPDTG-------FISYGEMVDQGQLITQA 148 (462)
Q Consensus 80 ~LR~ll~~~~~iv~p~ayDalSArl----~e~aGfdaI~vSG~avSas~lG~PD~g-------~vsl~Eml~~~~~I~ra 148 (462)
-|....+.+-.+.+.|||+.-+++. +|+++.+.|..-+-+.. ..++..... ......+...++.+++.
T Consensus 7 iL~~A~~~~yAV~AfN~~n~e~~~avi~AAee~~sPvIiq~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~A~~ 85 (345)
T cd00946 7 LFDYAKENGFAIPAVNCTSSSTINAVLEAARDAKSPIIIQFSNGGA-AFYAGKGLKNEKQKASIAGAIAAAHHVRSMAEH 85 (345)
T ss_pred HHHHHHHCCceEEEEeeCCHHHHHHHHHHHHHhCCCEEEECCccHH-hhcCCccccccchhhhhhhHHHHHHHHHHHHHH
Confidence 4444455555688899999999865 46678998887754432 122322100 11122566777788888
Q ss_pred cCCcEEEeCCCCCCC----HHHHHH----HHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHh
Q 012478 149 VSIPVIGDGDNGYGN----AMNVKR----TVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKE 220 (462)
Q Consensus 149 ~~iPVIaD~DtGyG~----~~nv~r----tVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~ 220 (462)
.++||.+=.|+|.-. ...+.+ .+++..++|...|.| |.. | .|.+|=++.-+.+++-+..
T Consensus 86 ~~VPValHLDHg~~~~~~~~~~~~~a~~~~~~~a~~~GftSVMi-DgS------~------lp~eENI~~TkevVe~Ah~ 152 (345)
T cd00946 86 YGVPVVLHTDHCAKKLLPWFDGLLEADEEYFKQHGEPLFSSHML-DLS------E------EPLEENIEICKKYLERMAK 152 (345)
T ss_pred CCCCEEEECCCCCCccchhhHHHHHHHHHHHHHhccCCCceEEe-eCC------C------CCHHHHHHHHHHHHHHHHH
Confidence 899999999999641 223333 334555789999999 542 3 3677777777777666553
Q ss_pred hCC----CeEEEE-ecchhh---------cccHHHHHHHHHHhHhc-----CCcEEEe-----cCCC-------CHHHHH
Q 012478 221 SGS----DIVIVA-RTDSRQ---------ALSLEESLRRSRAFADA-----GADVLFI-----DALA-------SKEEMK 269 (462)
Q Consensus 221 ~g~----d~vIiA-RTDA~~---------~~gldeAI~RakAy~eA-----GAD~Ifi-----e~~~-------s~eei~ 269 (462)
.|. ++=.++ .-|... -.. -+.|+.|.+. |+|++-+ +|+- +.+.++
T Consensus 153 ~gvsVEaElG~igg~ed~~~~~~~~~~~~yTd----PeeA~~Fv~~t~~~tgvD~LAvaiGt~HG~Y~~~~p~L~~~~L~ 228 (345)
T cd00946 153 INMWLEMEIGITGGEEDGVDNSGVDNAELYTQ----PEDVWYVYEALSKISPNFSIAAAFGNVHGVYKPGNVKLQPEILG 228 (345)
T ss_pred cCCEEEEEecccCCcccCcccccccccccCCC----HHHHHHHHHHhccCCCceeeeeeccccccCCCCCCCccCHHHHH
Confidence 321 111111 111100 012 2356667664 8897653 3331 456777
Q ss_pred HH----HHhCC-----CCceeeeeeecCCCCCCCCHHHHHhcCCCEEeccchHHHHHHHHHHHHHHH
Q 012478 270 AF----CEISP-----LVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVSVRAMQDALTA 327 (462)
Q Consensus 270 ~i----~~~v~-----~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~ll~aa~~Am~~~l~~ 327 (462)
++ .+.++ .+|+ ++.|+..+|.-...+.-+.|++-|-+...+..+..+++++.+..
T Consensus 229 ~I~~~i~~~~~~~~~~~ipL---VLHGgSG~~~e~i~kai~~GI~KiNi~T~l~~a~~~~i~~~~~~ 292 (345)
T cd00946 229 EHQDYVREKLGLADDKPLYF---VFHGGSGSTKEEIREAISYGVVKMNIDTDTQWAYWEGVRNYYLK 292 (345)
T ss_pred HHHHHHHHhhccccCCCCCE---EEeCCCCCCHHHHHHHHHcCCeeEEeCcHHHHHHHHHHHHHHhh
Confidence 77 44442 1343 35553333322334445789999999999999999999998753
No 132
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=96.00 E-value=0.11 Score=51.99 Aligned_cols=173 Identities=17% Similarity=0.207 Sum_probs=104.0
Q ss_pred ccccCCCCCccceeecceeeeeccchh--hhhhcccCCCCceeecccccCCCccccccCchHHHHHHHHhCCCceEe-cc
Q 012478 19 LFHSNSRPSSFLGINNNTISFNKTNTN--TLLLNTATNPGTINRTRVYRKNSTGVEACLSPAKSLRQILELPGVHQG-PA 95 (462)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Pr~~~~~R~y~rgs~~~~~a~~~a~~LR~ll~~~~~iv~-p~ 95 (462)
+|-..-+++.+-+++|.+=-.+-+..- ..+...+..-+|..+.-.--...+-.+. ...-+.-++|.+ .+..++ .+
T Consensus 53 ~~~~~i~~~~~~~lpNTaG~~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~-~~tv~aa~~L~~-~Gf~vlpyc 130 (248)
T cd04728 53 SFLDLLDKSGYTLLPNTAGCRTAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDP-IETLKAAEILVK-EGFTVLPYC 130 (248)
T ss_pred hHHhhccccCCEECCCCCCCCCHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCH-HHHHHHHHHHHH-CCCEEEEEe
Confidence 333344566777888876544433322 2345556677787765443222222221 112334455554 457777 58
Q ss_pred cCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHH
Q 012478 96 CFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYI 175 (462)
Q Consensus 96 ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~ 175 (462)
+=|...|+.++++|.++|..-|.-+. + | .+..+ .+++ +.|.+..++|||+| .|.+.+.++.+. .
T Consensus 131 ~dd~~~ar~l~~~G~~~vmPlg~pIG-s--g---~Gi~~-~~~I---~~I~e~~~vpVI~e--gGI~tpeda~~A----m 194 (248)
T cd04728 131 TDDPVLAKRLEDAGCAAVMPLGSPIG-S--G---QGLLN-PYNL---RIIIERADVPVIVD--AGIGTPSDAAQA----M 194 (248)
T ss_pred CCCHHHHHHHHHcCCCEeCCCCcCCC-C--C---CCCCC-HHHH---HHHHHhCCCcEEEe--CCCCCHHHHHHH----H
Confidence 88999999999999999955232221 1 1 23223 4444 45555578999999 577788777744 4
Q ss_pred HhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHH
Q 012478 176 KAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARK 219 (462)
Q Consensus 176 ~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~ 219 (462)
+.|++||.+--.. +.. -++..|+.+++.++++.+
T Consensus 195 elGAdgVlV~SAI------t~a----~dP~~ma~af~~Av~aGr 228 (248)
T cd04728 195 ELGADAVLLNTAI------AKA----KDPVAMARAFKLAVEAGR 228 (248)
T ss_pred HcCCCEEEEChHh------cCC----CCHHHHHHHHHHHHHHHH
Confidence 5899999985543 111 135677888887777765
No 133
>PRK09197 fructose-bisphosphate aldolase; Provisional
Probab=95.99 E-value=1.7 Score=45.70 Aligned_cols=227 Identities=12% Similarity=0.024 Sum_probs=135.4
Q ss_pred HHHHHHhCCCceEecccCChHHHHHH----HHhCCcEEEeccHHHHhhhcc---CCCC----CCCCHHHHHHHHHHHHhh
Q 012478 80 SLRQILELPGVHQGPACFDALSAKLV----EKSGFSFCFTSGFSISAARLA---LPDT----GFISYGEMVDQGQLITQA 148 (462)
Q Consensus 80 ~LR~ll~~~~~iv~p~ayDalSArl~----e~aGfdaI~vSG~avSas~lG---~PD~----g~vsl~Eml~~~~~I~ra 148 (462)
-|....+++--+.+.|+|+.-+++.+ |+..-+.|+..+-+.. ..+| +.+. -......+...++.+++.
T Consensus 12 ~L~~A~~~~yAV~AfNv~n~e~~~avi~AAee~~sPVIlq~s~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~A~~ 90 (350)
T PRK09197 12 MFDRAKENGFALPAVNVVGTDSINAVLEGAAEAKSPVIIQFSNGGA-AFIAGKGVKDDGQGAAVLGAIAGAKHVHEVAEH 90 (350)
T ss_pred HHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHHCCCEEEEcChhhH-hhcCCccccccchhhhhhhHHHHHHHHHHHHHH
Confidence 34444445556888899999998754 5668898887754432 2223 3431 112233467778888888
Q ss_pred cCCcEEEeCCCCCCC-HHHHH-------HHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHh
Q 012478 149 VSIPVIGDGDNGYGN-AMNVK-------RTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKE 220 (462)
Q Consensus 149 ~~iPVIaD~DtGyG~-~~nv~-------rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~ 220 (462)
.++||.+=.|+|.-. ...+. +.++.-+++|...|.| |.. | .|.||=+++-+.+++.++.
T Consensus 91 ~~VPValHLDHg~~~~~~~i~~ai~~g~~~v~~a~~~gftSVMi-DgS------~------lpfEeNI~~TkevVe~Ah~ 157 (350)
T PRK09197 91 YGVPVILHTDHCAKKLLPWIDGLLDAGEKHFAAGGKPLFSSHMI-DLS------E------EPLEENIEICSKYLERMAK 157 (350)
T ss_pred CCCCEEEECCCCCCcchHHHHHHHHhhHHHHHhcCCCCceeEEe-eCC------C------CCHHHHHHHHHHHHHHHHH
Confidence 899999999999642 22222 2233333445999999 442 3 4667777777776666653
Q ss_pred hCC----CeEEEEe-cchh---h------cccHHHHHHHHHHhH-hcCC----cEEEe-----cCCC-------CHHHHH
Q 012478 221 SGS----DIVIVAR-TDSR---Q------ALSLEESLRRSRAFA-DAGA----DVLFI-----DALA-------SKEEMK 269 (462)
Q Consensus 221 ~g~----d~vIiAR-TDA~---~------~~gldeAI~RakAy~-eAGA----D~Ifi-----e~~~-------s~eei~ 269 (462)
.|. ++=-++. .|.. . -...+ .|+.|. +.|+ |++-+ ++.- +.+.++
T Consensus 158 ~GvsVEaELG~Igg~Ed~~~~~~~~~~~~~TdPe----eA~~Fv~~Tgv~~~~D~LAvaiGt~HG~Yk~~~p~Ld~e~L~ 233 (350)
T PRK09197 158 AGMTLEIELGVTGGEEDGVDNSHEDNSKLYTQPE----DVLYAYEALGKISGRFTIAASFGNVHGVYKPGNVKLRPEILK 233 (350)
T ss_pred cCCEEEEEEeccCCCcCCccccccccccccCCHH----HHHHHHHHhCCCCcceEEeeecccccCCcCCCCCccCHHHHH
Confidence 321 1111111 1110 0 01233 455565 4577 87654 2321 457788
Q ss_pred HHHHhCC--------CCceeeeeeecCCCCCCCCHHHHHhcCCCEEeccchHHHHHHHHHHHHHHH
Q 012478 270 AFCEISP--------LVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVSVRAMQDALTA 327 (462)
Q Consensus 270 ~i~~~v~--------~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~ll~aa~~Am~~~l~~ 327 (462)
+|.+.++ .+|+ ++.|+..+|.=...+.-++|++-|-+...+..+...++++.+..
T Consensus 234 ~I~~~v~~~~~~~~~~vPL---VLHGgSGipde~i~~ai~~GI~KINi~T~l~~a~~~~~~~~~~~ 296 (350)
T PRK09197 234 DSQEYVSKKFGLPAKPFDF---VFHGGSGSTLEEIREAVSYGVVKMNIDTDTQWAFWRGVLDYYFK 296 (350)
T ss_pred HHHHHHHHhhCCCCCCCCE---EEeCCCCCCHHHHHHHHHCCCeeEEeCcHHHHHHHHHHHHHHHh
Confidence 8877761 3564 35553333332344455789999999999999999999998753
No 134
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=95.96 E-value=0.28 Score=49.63 Aligned_cols=147 Identities=21% Similarity=0.242 Sum_probs=92.1
Q ss_pred HHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHh
Q 012478 170 TVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAF 249 (462)
Q Consensus 170 tVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy 249 (462)
+.+.+.++|+++|-.-|...--.-||.++. -++.+||+...++++++.. .-+|++----..-.+.|++++-+.++
T Consensus 27 sA~i~~~aG~d~ilvGdSlgm~~lG~~~t~-~vtldem~~h~~aV~rg~~----~~~vv~DmPf~sy~~~e~a~~na~rl 101 (263)
T TIGR00222 27 FAKLFADAGVDVILVGDSLGMVVLGHDSTL-PVTVADMIYHTAAVKRGAP----NCLIVTDLPFMSYATPEQALKNAARV 101 (263)
T ss_pred HHHHHHHcCCCEEEECccHhHHhcCCCCCC-CcCHHHHHHHHHHHHhhCC----CceEEeCCCcCCCCCHHHHHHHHHHH
Confidence 456778899999999887644455776643 4799999999999988753 23333221111111368888888887
Q ss_pred Hh-cCCcEEEecCCCCH-HHHHHHHHhCCCCcee---------eeeeec---CCCCCCC------CHHHHHhcCCCEEec
Q 012478 250 AD-AGADVLFIDALASK-EEMKAFCEISPLVPKM---------ANMLEG---GGKTPIL------NPLELEELGFKLVAY 309 (462)
Q Consensus 250 ~e-AGAD~Ifie~~~s~-eei~~i~~~v~~vP~~---------~N~l~~---~g~tP~l------s~~eL~~lGv~~V~y 309 (462)
.+ +|||+|-+|+-... +.++.+++. ++|++ +|...+ .|+++.- ....|+++|...+.+
T Consensus 102 ~~eaGa~aVkiEgg~~~~~~i~~l~~~--gIpV~gHiGltPq~a~~~ggy~~qgrt~~~a~~~i~~A~a~e~AGA~~ivl 179 (263)
T TIGR00222 102 MQETGANAVKLEGGEWLVETVQMLTER--GVPVVGHLGLTPQSVNILGGYKVQGKDEEAAKKLLEDALALEEAGAQLLVL 179 (263)
T ss_pred HHHhCCeEEEEcCcHhHHHHHHHHHHC--CCCEEEecCCCceeEeecCCeeecCCCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 76 99999999986332 345555443 35666 443211 1333210 146789999999988
Q ss_pred cchHHHHHHHHHHHH
Q 012478 310 PLSLIGVSVRAMQDA 324 (462)
Q Consensus 310 p~~ll~aa~~Am~~~ 324 (462)
+... ....+.+.+.
T Consensus 180 E~vp-~~~a~~It~~ 193 (263)
T TIGR00222 180 ECVP-VELAAKITEA 193 (263)
T ss_pred cCCc-HHHHHHHHHh
Confidence 7766 3333333333
No 135
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=95.96 E-value=0.45 Score=51.71 Aligned_cols=246 Identities=18% Similarity=0.183 Sum_probs=134.0
Q ss_pred HHHHHHHHhCCcEEEeccHHHHh--hhccCCCCCCCCHHHHHHHHHHHHhh-cCCcEEE--eCCC--CCCC-HHHHHHH-
Q 012478 100 LSAKLVEKSGFSFCFTSGFSISA--ARLALPDTGFISYGEMVDQGQLITQA-VSIPVIG--DGDN--GYGN-AMNVKRT- 170 (462)
Q Consensus 100 lSArl~e~aGfdaI~vSG~avSa--s~lG~PD~g~vsl~Eml~~~~~I~ra-~~iPVIa--D~Dt--GyG~-~~nv~rt- 170 (462)
.-|..+.++||+.|=++|.+.-. .++-.|| -.|.+ +.+.+. .+.++.+ =..+ ||-. +.+|.+.
T Consensus 29 ~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl~e~-----p~e~l---~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDvv~~f 100 (467)
T PRK14041 29 PALEAFDRMGFYSMEVWGGATFDVCVRFLNEN-----PWERL---KEIRKRLKNTKIQMLLRGQNLVGYRHYADDVVELF 100 (467)
T ss_pred HHHHHHHHcCCCEEEecCCccchhhhcccCCC-----HHHHH---HHHHHhCCCCEEEEEeccccccCcccccchhhHHH
Confidence 34567778899999775322110 1122344 23333 444333 2355543 6665 5643 4565544
Q ss_pred HHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEE---EecchhhcccHHHHHHHHH
Q 012478 171 VKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIV---ARTDSRQALSLEESLRRSR 247 (462)
Q Consensus 171 Vk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIi---ARTDA~~~~gldeAI~Rak 247 (462)
++...++|++.|+|-|... + ++.++.+++..++.|. .+. .=|.. ....++..++-++
T Consensus 101 v~~A~~~Gvd~irif~~ln----------------d-~~n~~~~i~~ak~~G~--~v~~~i~~t~~-p~~t~e~~~~~a~ 160 (467)
T PRK14041 101 VKKVAEYGLDIIRIFDALN----------------D-IRNLEKSIEVAKKHGA--HVQGAISYTVS-PVHTLEYYLEFAR 160 (467)
T ss_pred HHHHHHCCcCEEEEEEeCC----------------H-HHHHHHHHHHHHHCCC--EEEEEEEeccC-CCCCHHHHHHHHH
Confidence 8888999999999988642 1 2334444444444342 222 11222 2456788899999
Q ss_pred HhHhcCCcEEEec---CCCCHHHHHHHHHhCCC-CceeeeeeecCCCCCCCCH---HHHHhcCCCEEeccchHH--HHHH
Q 012478 248 AFADAGADVLFID---ALASKEEMKAFCEISPL-VPKMANMLEGGGKTPILNP---LELEELGFKLVAYPLSLI--GVSV 318 (462)
Q Consensus 248 Ay~eAGAD~Ifie---~~~s~eei~~i~~~v~~-vP~~~N~l~~~g~tP~ls~---~eL~~lGv~~V~yp~~ll--~aa~ 318 (462)
.+.++|||.|.+- |+-+++++.++++.+.. +++++.+ +.+ .+..+.. -.--+.|+++|-.....+ ++..
T Consensus 161 ~l~~~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~~~vpI~~-H~H-nt~GlA~AN~laAieaGad~vD~sv~~~g~gagN 238 (467)
T PRK14041 161 ELVDMGVDSICIKDMAGLLTPKRAYELVKALKKKFGVPVEV-HSH-CTTGLASLAYLAAVEAGADMFDTAISPFSMGTSQ 238 (467)
T ss_pred HHHHcCCCEEEECCccCCcCHHHHHHHHHHHHHhcCCceEE-Eec-CCCCcHHHHHHHHHHhCCCEEEeeccccCCCCCC
Confidence 9999999999884 45567777776654321 2233332 221 1333433 344578998876544433 5566
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCcccHH-HHHHhhcccccccccccccCCCCCCCCC
Q 012478 319 RAMQDALTAIKGGRIPSPGSMPSFQEIKETLGFNTYY-EEEKRYATSMRRLSSENVTSNSYDTQPM 383 (462)
Q Consensus 319 ~Am~~~l~~l~~g~~~~~~~~~s~~e~~~lvg~~~~~-~~e~~y~~~~~~~~~~~~~~~~~~~~~~ 383 (462)
-++++.+..|+..+.. ..+.++.+. .+.+|+ +..++|..-+... ......+|..|--
T Consensus 239 ~atE~lv~~L~~~g~~---tgiDl~~L~---~~~~~~~~vr~~y~~~~~~~--~~~~~~v~~~q~P 296 (467)
T PRK14041 239 PPFESMYYAFRENGKE---TDFDRKALK---FLVEYFTKVREKYSEYDVGM--KSPDSRILVSQIP 296 (467)
T ss_pred hhHHHHHHHHHhcCCC---CCcCHHHHH---HHHHHHHHHHHHHhhcCCCC--CCCCcCeeeCCCC
Confidence 6777777777653221 123344443 334444 4445665544332 3345556666543
No 136
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=95.93 E-value=2.1 Score=42.76 Aligned_cols=166 Identities=19% Similarity=0.215 Sum_probs=97.0
Q ss_pred CCcEEEeCC--CCCC---CHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCC
Q 012478 150 SIPVIGDGD--NGYG---NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSD 224 (462)
Q Consensus 150 ~iPVIaD~D--tGyG---~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d 224 (462)
++|+++-.+ ++|+ ........+++..+.||++|.+=... |. ...+++.+-++++++..++.|..
T Consensus 73 ~~~l~~~i~~~~~~~~~~~~~~~~~~ve~A~~~Gad~v~~~~~~-----g~------~~~~~~~~~~~~v~~~~~~~g~p 141 (267)
T PRK07226 73 DVGLIVHLSASTSLSPDPNDKVLVGTVEEAIKLGADAVSVHVNV-----GS------ETEAEMLEDLGEVAEECEEWGMP 141 (267)
T ss_pred CCcEEEEEcCCCCCCCCCCcceeeecHHHHHHcCCCEEEEEEec-----CC------hhHHHHHHHHHHHHHHHHHcCCc
Confidence 455665544 4554 11233445788899999999885442 11 01345666777777777666778
Q ss_pred eEEEEecchhh---cccHHHHHHHHHHhHhcCCcEEEecCCCCHHHHHHHHHhCCCCceeeeeeecCCCCC-CCC-----
Q 012478 225 IVIVARTDSRQ---ALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTP-ILN----- 295 (462)
Q Consensus 225 ~vIiARTDA~~---~~gldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP-~ls----- 295 (462)
++++...|... ....++...-++...++|||.|-..-..+.+.++++++..+ +|+. ..| |-.. .+.
T Consensus 142 l~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD~vKt~~~~~~~~l~~~~~~~~-ipV~---a~G-Gi~~~~~~~~l~~ 216 (267)
T PRK07226 142 LLAMMYPRGPGIKNEYDPEVVAHAARVAAELGADIVKTNYTGDPESFREVVEGCP-VPVV---IAG-GPKTDTDREFLEM 216 (267)
T ss_pred EEEEEecCCCccCCCccHHHHHHHHHHHHHHCCCEEeeCCCCCHHHHHHHHHhCC-CCEE---EEe-CCCCCCHHHHHHH
Confidence 88876443211 11223434446778899999998765456778888887544 4542 233 4221 111
Q ss_pred HHHHHhcCCCEEeccchHHHH-HHHHHHHHHHHHHcC
Q 012478 296 PLELEELGFKLVAYPLSLIGV-SVRAMQDALTAIKGG 331 (462)
Q Consensus 296 ~~eL~~lGv~~V~yp~~ll~a-a~~Am~~~l~~l~~g 331 (462)
..++.+.|..-++.+..++.. -..++-..+.++-.+
T Consensus 217 v~~~~~aGA~Gis~gr~i~~~~~p~~~~~~l~~~v~~ 253 (267)
T PRK07226 217 VRDAMEAGAAGVAVGRNVFQHEDPEAITRAISAVVHE 253 (267)
T ss_pred HHHHHHcCCcEEehhhhhhcCCCHHHHHHHHHHHHhC
Confidence 456678999988887776643 123333444444433
No 137
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=95.87 E-value=0.84 Score=47.30 Aligned_cols=151 Identities=18% Similarity=0.238 Sum_probs=85.5
Q ss_pred HHHHHHHHHHhCccEEEeCCCC--------CC---CCCCCCCCCcccCH-HHHHHHHHHHHHHHHhhCCCeEEEEecchh
Q 012478 167 VKRTVKGYIKAGFAGIILEDQV--------SP---KGCGHTRGRKVVSR-EEAVMRIKAAVDARKESGSDIVIVARTDSR 234 (462)
Q Consensus 167 v~rtVk~l~~AGaaGI~IEDq~--------~P---KrCGH~~gk~Lvp~-ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~ 234 (462)
..+++++..++|++||.|--.- .| ||-..-+| .+... .-..+-|++++++ .|.+|.|.-|-...
T Consensus 143 f~~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGG-slenR~r~~~eiv~~ir~~---vg~~~~v~iRl~~~ 218 (343)
T cd04734 143 FADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGG-SLENRMRFLLEVLAAVRAA---VGPDFIVGIRISGD 218 (343)
T ss_pred HHHHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCC-CHHHHhHHHHHHHHHHHHH---cCCCCeEEEEeehh
Confidence 3455677788999999997631 23 33333333 22222 2233333444333 36788888785542
Q ss_pred h----cccHHHHHHHHHHhHhcC-CcEEEecCCC--------------------CHHHHHHHHHhCCCCceeeeeeecCC
Q 012478 235 Q----ALSLEESLRRSRAFADAG-ADVLFIDALA--------------------SKEEMKAFCEISPLVPKMANMLEGGG 289 (462)
Q Consensus 235 ~----~~gldeAI~RakAy~eAG-AD~Ifie~~~--------------------s~eei~~i~~~v~~vP~~~N~l~~~g 289 (462)
. ...++|+++-++.++++| +|.|-|.+-. ..+.++++.+.+. +|+++| |+
T Consensus 219 ~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~-ipvi~~----G~ 293 (343)
T cd04734 219 EDTEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVD-LPVFHA----GR 293 (343)
T ss_pred hccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcC-CCEEee----CC
Confidence 1 135799999999999998 8998773210 1244556666664 676654 22
Q ss_pred -CCCCCCHHHHHhc-CCCEEeccchHHHHHHHHHHHHHHHHHcCC
Q 012478 290 -KTPILNPLELEEL-GFKLVAYPLSLIGVSVRAMQDALTAIKGGR 332 (462)
Q Consensus 290 -~tP~ls~~eL~~l-Gv~~V~yp~~ll~aa~~Am~~~l~~l~~g~ 332 (462)
.+|. ..+++-+- ++..|.++-.++.- -+....+++|+
T Consensus 294 i~~~~-~~~~~l~~~~~D~V~~gR~~lad-----P~l~~k~~~g~ 332 (343)
T cd04734 294 IRDPA-EAEQALAAGHADMVGMTRAHIAD-----PHLVAKAREGR 332 (343)
T ss_pred CCCHH-HHHHHHHcCCCCeeeecHHhHhC-----ccHHHHHHcCC
Confidence 1221 13443343 48888776655432 24455556554
No 138
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=95.86 E-value=1.1 Score=48.90 Aligned_cols=254 Identities=15% Similarity=0.118 Sum_probs=137.6
Q ss_pred HHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCC--CCCC-HHHHH-HHHHHHHH
Q 012478 101 SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDN--GYGN-AMNVK-RTVKGYIK 176 (462)
Q Consensus 101 SArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~Dt--GyG~-~~nv~-rtVk~l~~ 176 (462)
-|..++++||.++=+.|.+.-.+.+++-.. +--|.+..++.....+.+=.+.=+-+ ||-+ +.+|. ..+++..+
T Consensus 40 ia~~ld~~G~~siE~wGGAtfd~~~rfl~e---dpwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~fv~~a~~ 116 (468)
T PRK12581 40 VLTILDKIGYYSLECWGGATFDACIRFLNE---DPWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKFISLSAQ 116 (468)
T ss_pred HHHHHHhcCCCEEEecCCcchhhhhcccCC---CHHHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHHHHHHHHH
Confidence 457778899999988753322233455332 22445555554433332222222444 4554 44554 44888889
Q ss_pred hCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCe-EEEEecchhhcccHHHHHHHHHHhHhcCCc
Q 012478 177 AGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDI-VIVARTDSRQALSLEESLRRSRAFADAGAD 255 (462)
Q Consensus 177 AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~-vIiARTDA~~~~gldeAI~RakAy~eAGAD 255 (462)
.|++-+.|=|.. -+.+-+..-|++++++ |... +-+.=|++ ..+.++=.++-++.+.++|||
T Consensus 117 ~Gidi~Rifd~l-------------nd~~n~~~ai~~ak~~----G~~~~~~i~yt~s-p~~t~~y~~~~a~~l~~~Gad 178 (468)
T PRK12581 117 NGIDVFRIFDAL-------------NDPRNIQQALRAVKKT----GKEAQLCIAYTTS-PVHTLNYYLSLVKELVEMGAD 178 (468)
T ss_pred CCCCEEEEcccC-------------CCHHHHHHHHHHHHHc----CCEEEEEEEEEeC-CcCcHHHHHHHHHHHHHcCCC
Confidence 999999998852 2334444444444433 4321 22223332 234667778889999999999
Q ss_pred EEEec---CCCCHHHHHHHHHhCCCC-ceeeeeeecCCCCCCCCH---HHHHhcCCCEEeccchHH--HHHHHHHHHHHH
Q 012478 256 VLFID---ALASKEEMKAFCEISPLV-PKMANMLEGGGKTPILNP---LELEELGFKLVAYPLSLI--GVSVRAMQDALT 326 (462)
Q Consensus 256 ~Ifie---~~~s~eei~~i~~~v~~v-P~~~N~l~~~g~tP~ls~---~eL~~lGv~~V~yp~~ll--~aa~~Am~~~l~ 326 (462)
.|.+- |+-+++++.++++.+... .+++.+ +. -.+..+.. -.--+.|++.|=.....+ ++..-++++.+.
T Consensus 179 ~I~IkDtaG~l~P~~v~~Lv~alk~~~~~pi~~-H~-Hnt~GlA~An~laAieAGad~vD~ai~g~g~gagN~~tE~lv~ 256 (468)
T PRK12581 179 SICIKDMAGILTPKAAKELVSGIKAMTNLPLIV-HT-HATSGISQMTYLAAVEAGADRIDTALSPFSEGTSQPATESMYL 256 (468)
T ss_pred EEEECCCCCCcCHHHHHHHHHHHHhccCCeEEE-Ee-CCCCccHHHHHHHHHHcCCCEEEeeccccCCCcCChhHHHHHH
Confidence 99985 456777887777654321 233332 22 12344433 344578988875544433 456666777777
Q ss_pred HHHcCCCCCCCCCCCHHHHHHhcCcccHHHHHHhhccccc-ccccccccCCCCCCCC
Q 012478 327 AIKGGRIPSPGSMPSFQEIKETLGFNTYYEEEKRYATSMR-RLSSENVTSNSYDTQP 382 (462)
Q Consensus 327 ~l~~g~~~~~~~~~s~~e~~~lvg~~~~~~~e~~y~~~~~-~~~~~~~~~~~~~~~~ 382 (462)
.|+..+... .+.++.+.++-.+ +.+..++|.+... ..........+|..|-
T Consensus 257 ~L~~~g~~t---giDl~~L~~~a~~--~~~vr~~y~~~~~~~~~~~~~d~~v~~hqi 308 (468)
T PRK12581 257 ALKEAGYDI---TLDETLLEQAANH--LRQARQKYLADGILDPSLLFPDPRTLQYQV 308 (468)
T ss_pred HHHhcCCCC---CcCHHHHHHHHHH--HHHHHHHhcccccCCCccCCCCcceeeCCC
Confidence 776532221 2334444443322 5666677765221 1111234555565553
No 139
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=95.84 E-value=1.2 Score=48.94 Aligned_cols=258 Identities=15% Similarity=0.146 Sum_probs=137.1
Q ss_pred HHHHHHhCCCceEecccCChH-HHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCC
Q 012478 80 SLRQILELPGVHQGPACFDAL-SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGD 158 (462)
Q Consensus 80 ~LR~ll~~~~~iv~p~ayDal-SArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~D 158 (462)
+||.-+++..... ....|-+ -|..++++||..|=+.|.+.--+.+.+-. .=+ -|.+...+.....+.+=...=+-
T Consensus 11 TLRDG~QSl~atr-~~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl~--Edp-werlr~lr~~~~nt~lqmL~Rg~ 86 (499)
T PRK12330 11 ALRDAHQSLMATR-MAMEDMVGACEDIDNAGYWSVECWGGATFDACIRFLN--EDP-WERLRTFRKLMPNSRLQMLLRGQ 86 (499)
T ss_pred CccchhhcccCcc-CCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccC--CCH-HHHHHHHHHhCCCCeEEEEEccc
Confidence 4555555432121 1233333 35677889999998875332212233322 112 23333333332222233334444
Q ss_pred C--CCCC-HHHHH-HHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCe-EEEEecch
Q 012478 159 N--GYGN-AMNVK-RTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDI-VIVARTDS 233 (462)
Q Consensus 159 t--GyG~-~~nv~-rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~-vIiARTDA 233 (462)
+ ||.+ +.++. .-+++..+.|++-++|=|... +.+-+..-|++++++ |... .-+.-|-+
T Consensus 87 N~vGy~~y~ddvv~~fv~~a~~~Gidi~RIfd~ln-------------dv~nl~~ai~~vk~a----g~~~~~~i~yt~s 149 (499)
T PRK12330 87 NLLGYRHYEDEVVDRFVEKSAENGMDVFRVFDALN-------------DPRNLEHAMKAVKKV----GKHAQGTICYTVS 149 (499)
T ss_pred ccCCccCcchhHHHHHHHHHHHcCCCEEEEEecCC-------------hHHHHHHHHHHHHHh----CCeEEEEEEEecC
Confidence 4 6776 45554 558999999999999988641 223333333333333 3221 11222222
Q ss_pred hhcccHHHHHHHHHHhHhcCCcEEEec---CCCCHHHHHHHHHhCCC-Cc--eeeeeeecCCCCCCCCH---HHHHhcCC
Q 012478 234 RQALSLEESLRRSRAFADAGADVLFID---ALASKEEMKAFCEISPL-VP--KMANMLEGGGKTPILNP---LELEELGF 304 (462)
Q Consensus 234 ~~~~gldeAI~RakAy~eAGAD~Ifie---~~~s~eei~~i~~~v~~-vP--~~~N~l~~~g~tP~ls~---~eL~~lGv 304 (462)
..+.++..++-++.+.++|||.|.+- |+-+++++.++++.+.. +| +++.+ +.+ .+..+.. -.--+.|+
T Consensus 150 -p~~t~e~~~~~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~~~~~ipI~~-H~H-nt~GlA~An~laAieAGa 226 (499)
T PRK12330 150 -PIHTVEGFVEQAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEACGEDTRINL-HCH-STTGVTLVSLMKAIEAGV 226 (499)
T ss_pred -CCCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHhCCCCCeEEE-EeC-CCCCcHHHHHHHHHHcCC
Confidence 24578888999999999999999885 45566777766654311 11 33443 221 2344433 33457899
Q ss_pred CEEeccchH--HHHHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCcccHHHHHHhhccccc
Q 012478 305 KLVAYPLSL--IGVSVRAMQDALTAIKGGRIPSPGSMPSFQEIKETLGFNTYYEEEKRYATSMR 366 (462)
Q Consensus 305 ~~V~yp~~l--l~aa~~Am~~~l~~l~~g~~~~~~~~~s~~e~~~lvg~~~~~~~e~~y~~~~~ 366 (462)
+.|=..... .++..-++++.+..|+..+.. ..+.++.+.++-. .|.+...+|..-..
T Consensus 227 d~vDtai~Glg~~aGn~atE~vv~~L~~~g~~---tgiDl~~L~~i~~--~~~~vr~~y~~~~~ 285 (499)
T PRK12330 227 DVVDTAISSMSLGPGHNPTESLVEMLEGTGYT---TKLDMDRLLKIRD--HFKKVRPKYKEFES 285 (499)
T ss_pred CEEEeecccccccccchhHHHHHHHHHhcCCC---CCCCHHHHHHHHH--HHHHHHHHHhcccc
Confidence 987665543 355566677777777653222 1234555544322 24455556655443
No 140
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=95.83 E-value=1.3 Score=49.49 Aligned_cols=250 Identities=18% Similarity=0.141 Sum_probs=139.3
Q ss_pred HHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCC--CCCC-HHHHHH-HHHHHHH
Q 012478 101 SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDN--GYGN-AMNVKR-TVKGYIK 176 (462)
Q Consensus 101 SArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~Dt--GyG~-~~nv~r-tVk~l~~ 176 (462)
-|..++++||..+=+.|.+.--+.+++-. -+--|++...+.....+.+=.+.=.-+ ||++ +.||.+ .+++..+
T Consensus 31 ia~~~d~~g~~siE~~gGatfd~~~rfl~---edpwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~v~~a~~ 107 (596)
T PRK14042 31 ICNKMDDVGFWAMEVWGGATFDACLRFLK---EDPWSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAFVKLAVN 107 (596)
T ss_pred HHHHHHhcCCCEEEeeCCcccceeecccC---CCHHHHHHHHHHhCCCCceEEEeccccccccccCChHHHHHHHHHHHH
Confidence 45667789999998884332112334422 233455555555443232333343444 7876 556555 5999999
Q ss_pred hCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEE--ecchhhcccHHHHHHHHHHhHhcCC
Q 012478 177 AGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVA--RTDSRQALSLEESLRRSRAFADAGA 254 (462)
Q Consensus 177 AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiA--RTDA~~~~gldeAI~RakAy~eAGA 254 (462)
.|++=+-|=|.. -+.+-+..-|++++++ |. .+..+ =|.+ ..+.++.-++-++.+.++||
T Consensus 108 ~Gidv~Rifd~l-------------nd~~n~~~~i~~~k~~----G~-~~~~~i~yt~s-p~~t~e~~~~~ak~l~~~Ga 168 (596)
T PRK14042 108 NGVDVFRVFDAL-------------NDARNLKVAIDAIKSH----KK-HAQGAICYTTS-PVHTLDNFLELGKKLAEMGC 168 (596)
T ss_pred cCCCEEEEcccC-------------cchHHHHHHHHHHHHc----CC-EEEEEEEecCC-CCCCHHHHHHHHHHHHHcCC
Confidence 999999998862 2233344444444443 32 22222 3333 25678888999999999999
Q ss_pred cEEEec---CCCCHHHHHHHHHhCCC-CceeeeeeecCCCCCCCCH---HHHHhcCCCEEeccchHH--HHHHHHHHHHH
Q 012478 255 DVLFID---ALASKEEMKAFCEISPL-VPKMANMLEGGGKTPILNP---LELEELGFKLVAYPLSLI--GVSVRAMQDAL 325 (462)
Q Consensus 255 D~Ifie---~~~s~eei~~i~~~v~~-vP~~~N~l~~~g~tP~ls~---~eL~~lGv~~V~yp~~ll--~aa~~Am~~~l 325 (462)
|.|.|- |+-+++++.++++.+.. +++++.+ +. -.+..+.. -.--++|+++|=.....+ ++..-+++..+
T Consensus 169 d~I~IkDtaG~l~P~~v~~lv~alk~~~~ipi~~-H~-Hnt~Gla~an~laAieaGad~iD~ai~glGg~tGn~~tE~lv 246 (596)
T PRK14042 169 DSIAIKDMAGLLTPTVTVELYAGLKQATGLPVHL-HS-HSTSGLASICHYEAVLAGCNHIDTAISSFSGGASHPPTEALV 246 (596)
T ss_pred CEEEeCCcccCCCHHHHHHHHHHHHhhcCCEEEE-Ee-CCCCCcHHHHHHHHHHhCCCEEEeccccccCCCCcHhHHHHH
Confidence 999985 45567777777655421 2344433 22 12444433 344578999886655544 34556666666
Q ss_pred HHHHcCCCCCCCCCCCHHHHHHhcCcccHHH-HHHhhcccccccccccccCCCCCCCC
Q 012478 326 TAIKGGRIPSPGSMPSFQEIKETLGFNTYYE-EEKRYATSMRRLSSENVTSNSYDTQP 382 (462)
Q Consensus 326 ~~l~~g~~~~~~~~~s~~e~~~lvg~~~~~~-~e~~y~~~~~~~~~~~~~~~~~~~~~ 382 (462)
..|...+.. ..+.++.+.+ +.+|++ ..++|...+... ......+|..|-
T Consensus 247 ~~L~~~g~~---tgidl~~l~~---~~~~~~~vr~~y~~~~~~~--~~~~~~v~~hq~ 296 (596)
T PRK14042 247 AALTDTPYD---TELDLNILLE---IDDYFKAVRKKYSQFESEA--QNIDPRVQLYQV 296 (596)
T ss_pred HHHHhcCCC---CCCCHHHHHH---HHHHHHHHHHHHhhcCCcc--ccCCcceeecCC
Confidence 666653222 1233333333 344444 455665543332 234455665553
No 141
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=95.83 E-value=0.35 Score=51.10 Aligned_cols=190 Identities=14% Similarity=0.110 Sum_probs=105.0
Q ss_pred ccCCCCCCCC---HHHHHHHHHHHHhhc-CCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCc
Q 012478 125 LALPDTGFIS---YGEMVDQGQLITQAV-SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRK 200 (462)
Q Consensus 125 lG~PD~g~vs---l~Eml~~~~~I~ra~-~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~ 200 (462)
.|++..+.++ +++.+...+++.... +.|||+-. +|..++....+.++.++++|+++|-|-=....+..+...|..
T Consensus 70 ~g~~n~~~~s~~~~~~~~~~~~~~~~~~~~~p~i~si-~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~ 148 (420)
T PRK08318 70 IGFNNIELITDRPLEVNLREIRRVKRDYPDRALIASI-MVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSA 148 (420)
T ss_pred ccccCcccccccCHHHHHHHHHHHHhhCCCceEEEEe-ccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCccc
Confidence 4555555433 455666666665444 58888776 343346778899999999999999885542111111111222
Q ss_pred c-cCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEe--------------------
Q 012478 201 V-VSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFI-------------------- 259 (462)
Q Consensus 201 L-vp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifi-------------------- 259 (462)
+ -..+.+.+-+++++++. ..++.+-=|-+ +++..+-+++.+++|||.|.+
T Consensus 149 ~~~~~~~~~~i~~~v~~~~---~~Pv~vKl~p~------~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~ 219 (420)
T PRK08318 149 VGQVPELVEMYTRWVKRGS---RLPVIVKLTPN------ITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPI 219 (420)
T ss_pred ccCCHHHHHHHHHHHHhcc---CCcEEEEcCCC------cccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCce
Confidence 2 23344444444444332 23455544432 234456678889999999882
Q ss_pred -cC------CC-------CHHHHHHHHHhCC--CCceeeeeeecCCCCCCCCHHHHHhcCCCEEeccchHHHHHHHHHHH
Q 012478 260 -DA------LA-------SKEEMKAFCEISP--LVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVSVRAMQD 323 (462)
Q Consensus 260 -e~------~~-------s~eei~~i~~~v~--~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~ll~aa~~Am~~ 323 (462)
++ +. +.+.+.++.+.++ .+|+..| ||-.-.-+..|+-..|...|-.+..++.--...+++
T Consensus 220 ~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~~~~~ipIig~----GGI~s~~da~e~i~aGA~~Vqi~ta~~~~gp~ii~~ 295 (420)
T PRK08318 220 VNGKSSHGGYCGPAVKPIALNMVAEIARDPETRGLPISGI----GGIETWRDAAEFILLGAGTVQVCTAAMQYGFRIVED 295 (420)
T ss_pred ecCCCCcccccchhhhHHHHHHHHHHHhccccCCCCEEee----cCcCCHHHHHHHHHhCCChheeeeeeccCCchhHHH
Confidence 10 10 1345556666552 3555432 443322345566668988888877776644444444
Q ss_pred HHHHH
Q 012478 324 ALTAI 328 (462)
Q Consensus 324 ~l~~l 328 (462)
....|
T Consensus 296 I~~~L 300 (420)
T PRK08318 296 MISGL 300 (420)
T ss_pred HHHHH
Confidence 44444
No 142
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=95.83 E-value=0.2 Score=48.66 Aligned_cols=208 Identities=22% Similarity=0.246 Sum_probs=118.6
Q ss_pred HHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhc-CCcEEEeCCCCCCCHHHHHHHHHHHHHhCcc
Q 012478 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV-SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFA 180 (462)
Q Consensus 102 Arl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~-~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaa 180 (462)
+..+.++|++.|=+++....- -+|- +.+-.+.++.+.+.. +.++.+...+| .+.++++.++|+.
T Consensus 25 ~~~L~~~GV~~IEvg~~~~~~---~~p~-----~~~~~~~i~~l~~~~~~~~~~~l~~~~-------~~~i~~a~~~g~~ 89 (265)
T cd03174 25 AEALDEAGVDSIEVGSGASPK---AVPQ-----MEDDWEVLRAIRKLVPNVKLQALVRNR-------EKGIERALEAGVD 89 (265)
T ss_pred HHHHHHcCCCEEEeccCcCcc---cccc-----CCCHHHHHHHHHhccCCcEEEEEccCc-------hhhHHHHHhCCcC
Confidence 345667899999998755321 1121 122333445555544 57888888776 5667888899999
Q ss_pred EEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhh-cccHHHHHHHHHHhHhcCCcEEEe
Q 012478 181 GIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQ-ALSLEESLRRSRAFADAGADVLFI 259 (462)
Q Consensus 181 GI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~-~~gldeAI~RakAy~eAGAD~Ifi 259 (462)
.|+|=+...+ -|...+--.+.++..+++..+.+..++.|..+.+.. +++.. ....++..+.++...++|||.|.+
T Consensus 90 ~i~i~~~~s~---~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~-~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l 165 (265)
T cd03174 90 EVRIFDSASE---THSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSL-EDAFGCKTDPEYVLEVAKALEEAGADEISL 165 (265)
T ss_pred EEEEEEecCH---HHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE-EeecCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 9999876532 222111112455666777666666665554433333 13322 256788888999999999999987
Q ss_pred c---CCCCHHHHHHHHHhCCC-Cc-eeeeeeecCCCCCCC---CHHHHHhcCCCEEeccchHH--HHHHHHHHHHHHHHH
Q 012478 260 D---ALASKEEMKAFCEISPL-VP-KMANMLEGGGKTPIL---NPLELEELGFKLVAYPLSLI--GVSVRAMQDALTAIK 329 (462)
Q Consensus 260 e---~~~s~eei~~i~~~v~~-vP-~~~N~l~~~g~tP~l---s~~eL~~lGv~~V~yp~~ll--~aa~~Am~~~l~~l~ 329 (462)
. +.-+++++.++.+.+.. +| .++.+ ... .+..+ +.-+--++|++.|--....+ ++...++++.+..|+
T Consensus 166 ~Dt~G~~~P~~v~~li~~l~~~~~~~~~~~-H~H-n~~gla~an~laA~~aG~~~id~s~~G~G~~~Gn~~~e~~~~~l~ 243 (265)
T cd03174 166 KDTVGLATPEEVAELVKALREALPDVPLGL-HTH-NTLGLAVANSLAALEAGADRVDGSVNGLGERAGNAATEDLVAALE 243 (265)
T ss_pred chhcCCcCHHHHHHHHHHHHHhCCCCeEEE-EeC-CCCChHHHHHHHHHHcCCCEEEeccccccccccCccHHHHHHHHH
Confidence 3 45677777777654321 22 33332 211 12222 22333456777765544444 344445555555554
Q ss_pred c
Q 012478 330 G 330 (462)
Q Consensus 330 ~ 330 (462)
.
T Consensus 244 ~ 244 (265)
T cd03174 244 G 244 (265)
T ss_pred h
Confidence 3
No 143
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=95.82 E-value=0.19 Score=51.16 Aligned_cols=160 Identities=16% Similarity=0.126 Sum_probs=89.3
Q ss_pred EecccCCh----HHHHHHHHhCCcEEEec-cHHHHhhhccCCCCCC--C-CHHHHHHHHHHHHhhcCCcEEEeCCCCCCC
Q 012478 92 QGPACFDA----LSAKLVEKSGFSFCFTS-GFSISAARLALPDTGF--I-SYGEMVDQGQLITQAVSIPVIGDGDNGYGN 163 (462)
Q Consensus 92 v~p~ayDa----lSArl~e~aGfdaI~vS-G~avSas~lG~PD~g~--v-sl~Eml~~~~~I~ra~~iPVIaD~DtGyG~ 163 (462)
+-.+..|+ -.|+.++++|||+|=+- |.-. .-+. -.-.|. + ..+-+.+.++.|.+.+++||++-+-.|+.+
T Consensus 67 ~ql~g~~~~~~~~aa~~~~~~G~d~IelN~gcP~-~~~~-~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~ 144 (319)
T TIGR00737 67 VQLFGSDPDTMAEAAKINEELGADIIDINMGCPV-PKIT-KKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDD 144 (319)
T ss_pred EEEeCCCHHHHHHHHHHHHhCCCCEEEEECCCCH-HHhc-CCCccchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCC
Confidence 33455555 34567778999999775 3221 1110 011121 1 345566777888888899999998777643
Q ss_pred -HHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHH
Q 012478 164 -AMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (462)
Q Consensus 164 -~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeA 242 (462)
.....+.++.++++|+++|.+-... +.+|+.+ . . ..+.++.++++. +.+++.++.. ..
T Consensus 145 ~~~~~~~~a~~l~~~G~d~i~vh~r~--~~~~~~~-~--~----~~~~i~~i~~~~---~ipvi~nGgI--~~------- 203 (319)
T TIGR00737 145 AHINAVEAARIAEDAGAQAVTLHGRT--RAQGYSG-E--A----NWDIIARVKQAV---RIPVIGNGDI--FS------- 203 (319)
T ss_pred CcchHHHHHHHHHHhCCCEEEEEccc--ccccCCC-c--h----hHHHHHHHHHcC---CCcEEEeCCC--CC-------
Confidence 2356678899999999999995432 2234322 1 1 122333333332 2344444443 22
Q ss_pred HHHHHHhH-hcCCcEEEec--CCCCHHHHHHHHHh
Q 012478 243 LRRSRAFA-DAGADVLFID--ALASKEEMKAFCEI 274 (462)
Q Consensus 243 I~RakAy~-eAGAD~Ifie--~~~s~eei~~i~~~ 274 (462)
.+.+..+. +.|||+|++- .+.++..+.++.+.
T Consensus 204 ~~da~~~l~~~gad~VmigR~~l~~P~l~~~~~~~ 238 (319)
T TIGR00737 204 PEDAKAMLETTGCDGVMIGRGALGNPWLFRQIEQY 238 (319)
T ss_pred HHHHHHHHHhhCCCEEEEChhhhhCChHHHHHHHH
Confidence 12344444 5799999983 23455555555543
No 144
>PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2.1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D.
Probab=95.80 E-value=0.075 Score=53.59 Aligned_cols=107 Identities=22% Similarity=0.245 Sum_probs=69.5
Q ss_pred HHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhh-cccHHHHHHHHH
Q 012478 169 RTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQ-ALSLEESLRRSR 247 (462)
Q Consensus 169 rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~-~~gldeAI~Rak 247 (462)
-+.+.+.++|++.|.+-|...--..||.. ..-++.++|+.-.+|.+.+.. .-+|++----.. ..+.++|++-|.
T Consensus 27 ~~A~~~d~agvD~iLVGDSlgmv~~G~~s-T~~vtld~mi~h~~aV~Rga~----~~~vv~DmPf~sy~~s~e~av~nA~ 101 (261)
T PF02548_consen 27 PSARIADEAGVDIILVGDSLGMVVLGYDS-TLPVTLDEMIYHTKAVRRGAP----NAFVVADMPFGSYQASPEQAVRNAG 101 (261)
T ss_dssp HHHHHHHHTT-SEEEE-TTHHHHTT--SS-STT--HHHHHHHHHHHHHH-T----SSEEEEE--TTSSTSSHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEeCCcHHHheeCCCC-CcCcCHHHHHHHHHHHHhcCC----CceEEecCCcccccCCHHHHHHHHH
Confidence 34567788999999999986433456644 234688999999988887763 455665422211 247899999999
Q ss_pred HhHh-cCCcEEEecCCC-CHHHHHHHHHhCCCCceee
Q 012478 248 AFAD-AGADVLFIDALA-SKEEMKAFCEISPLVPKMA 282 (462)
Q Consensus 248 Ay~e-AGAD~Ifie~~~-s~eei~~i~~~v~~vP~~~ 282 (462)
++.+ +|||+|-+|+-. ..+.++.++++ ++|++-
T Consensus 102 rl~ke~GadaVKlEGg~~~~~~i~~l~~~--GIPV~g 136 (261)
T PF02548_consen 102 RLMKEAGADAVKLEGGAEIAETIKALVDA--GIPVMG 136 (261)
T ss_dssp HHHHTTT-SEEEEEBSGGGHHHHHHHHHT--T--EEE
T ss_pred HHHHhcCCCEEEeccchhHHHHHHHHHHC--CCcEEE
Confidence 9988 999999999864 56788888876 356553
No 145
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=95.80 E-value=1.6 Score=43.73 Aligned_cols=88 Identities=11% Similarity=0.195 Sum_probs=63.3
Q ss_pred HHHHHHHhCCCceE--ecccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEe
Q 012478 79 KSLRQILELPGVHQ--GPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGD 156 (462)
Q Consensus 79 ~~LR~ll~~~~~iv--~p~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD 156 (462)
..|++.+.++++++ .....++..+.++..+|||.+++=- -+ +.++++++.+.++.+ +..+++.+|=
T Consensus 8 n~lk~~l~~g~~~~g~~~~~~sp~~~e~~a~~G~D~v~iD~------EH-----g~~~~~~~~~~i~a~-~~~g~~~lVR 75 (256)
T PRK10558 8 NKFKAALAAKQVQIGCWSALANPITTEVLGLAGFDWLVLDG------EH-----APNDVSTFIPQLMAL-KGSASAPVVR 75 (256)
T ss_pred HHHHHHHHcCCceEEEEEcCCCcHHHHHHHhcCCCEEEEcc------cc-----CCCCHHHHHHHHHHH-hhcCCCcEEE
Confidence 35899999888753 2356788999999999999999742 12 346777777766664 5567777777
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCccEEEe
Q 012478 157 GDNGYGNAMNVKRTVKGYIKAGFAGIIL 184 (462)
Q Consensus 157 ~DtGyG~~~nv~rtVk~l~~AGaaGI~I 184 (462)
.+.. ++ ..+++..++|+.||.+
T Consensus 76 vp~~--~~----~~i~r~LD~Ga~giiv 97 (256)
T PRK10558 76 VPTN--EP----VIIKRLLDIGFYNFLI 97 (256)
T ss_pred CCCC--CH----HHHHHHhCCCCCeeee
Confidence 7664 33 3446677899999976
No 146
>COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only]
Probab=95.80 E-value=0.07 Score=52.85 Aligned_cols=164 Identities=22% Similarity=0.313 Sum_probs=97.5
Q ss_pred HHHHHHHHhCCCceEecccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCC-CCCCHHH----HHHHHHHHHhh-cCC
Q 012478 78 AKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDT-GFISYGE----MVDQGQLITQA-VSI 151 (462)
Q Consensus 78 a~~LR~ll~~~~~iv~p~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~-g~vsl~E----ml~~~~~I~ra-~~i 151 (462)
-.+||..++++.+++--++--.++|+..|+-|.|.|++=+.+== -+.|++.. +++.+.. +++.++.+--. ...
T Consensus 10 ~~~~r~ti~~~s~iig~~~gTglsAkaeeagg~d~i~~~nsgr~-r~ag~~Sl~gLLa~~naN~~vld~a~e~lp~~r~t 88 (276)
T COG5564 10 VASFRYTIHKGSPIIGGGAGTGLSAKAEEAGGIDLIYIYNSGRY-RMAGRGSLAGLLAYGNANDIVLDMAREVLPVVRQT 88 (276)
T ss_pred HHHHHHhhcCCCcccccccccchhhhhhhcCCceEEEEecCccc-cccccchhhhhhhccCccHHHHHHHHhhCCccccC
Confidence 35799999999999999999999999999999998876522210 12367665 3555532 33333333111 134
Q ss_pred cEEEeCCCCCCCHH-HHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHH----HHHHHHHHHHHHHhhCCCeE
Q 012478 152 PVIGDGDNGYGNAM-NVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREE----AVMRIKAAVDARKESGSDIV 226 (462)
Q Consensus 152 PVIaD~DtGyG~~~-nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee----~~~kI~AA~~Ar~~~g~d~v 226 (462)
||.+-.- | -+|- ....-.+.+..+|..||+ -|| .||..+|.=-.+.|| +-..|.-.+.|-. .|+.
T Consensus 89 pv~aGv~-~-~DPf~~~~~~L~~L~~~gf~gV~----NFP-Tv~~iDG~~R~~lEetGmG~~~Evemlr~A~~---k~l~ 158 (276)
T COG5564 89 PVLAGVN-G-TDPFCRMVDFLKELKTAGFSGVQ----NFP-TVGLIDGRMRASLEETGMGYGLEVEMLREAHA---KDLL 158 (276)
T ss_pred cceeccc-C-CCcchhHHHHHHHHHhcCCcccc----cCC-eeEEecchhhhhHHHhCcchHHHHHHHHHHHh---cccc
Confidence 5543211 1 1342 333446788889999984 343 477777765555555 2223333333332 2444
Q ss_pred EEEecchhhcccHHHHHHHHHHhHhcCCcEEEecC
Q 012478 227 IVARTDSRQALSLEESLRRSRAFADAGADVLFIDA 261 (462)
Q Consensus 227 IiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~ 261 (462)
-.+-.+. .+.|++..+||||.|+.+.
T Consensus 159 t~~yV~s---------~~eAqa~~~aGadiiv~hm 184 (276)
T COG5564 159 TTPYVFS---------FEEAQAMTKAGADIIVAHM 184 (276)
T ss_pred ccceecC---------HHHHHHHHHcCcceeeecc
Confidence 3333332 2357788899999999863
No 147
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=95.79 E-value=0.62 Score=45.86 Aligned_cols=197 Identities=15% Similarity=0.141 Sum_probs=106.7
Q ss_pred ecccCChHHHHHHHHhCCcEEEeccHHH-----Hhh----hccCCCCCCC-CHHHHHHHHHHHHhhcCCcEEEeCCCCCC
Q 012478 93 GPACFDALSAKLVEKSGFSFCFTSGFSI-----SAA----RLALPDTGFI-SYGEMVDQGQLITQAVSIPVIGDGDNGYG 162 (462)
Q Consensus 93 ~p~ayDalSArl~e~aGfdaI~vSG~av-----Sas----~lG~PD~g~v-sl~Eml~~~~~I~ra~~iPVIaD~DtGyG 162 (462)
|-|.-|+-.++.+.+. |-+..++|+++ .++ .-|..-.-.- +++..-...+.+ +..+.|+++-. +|
T Consensus 7 Mag~td~~f~~~~~~~-~g~~~~Gg~~~d~~~~~aa~~~~~~~~~ef~~~~~~~~~~~~~~~~-~~~~~p~~vqi---~g 81 (233)
T cd02911 7 MAGITDGDFCRKRADH-AGLVFLGGYNLDERTIEAARKLVKRGRKEFLPDDPLEFIEGEIKAL-KDSNVLVGVNV---RS 81 (233)
T ss_pred cCCCcCHHHHHhhCcc-CCEEEEcccccCHHHHHHHHHHHhcCCccccccchHHHHHHHHHHh-hccCCeEEEEe---cC
Confidence 4588888888844332 44566665442 111 1132221111 222222223333 33467888876 34
Q ss_pred -CHHHHHHHHHHHHHhCccEEEeCCCC-CCCCCCCCCCCccc-CHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccH
Q 012478 163 -NAMNVKRTVKGYIKAGFAGIILEDQV-SPKGCGHTRGRKVV-SREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSL 239 (462)
Q Consensus 163 -~~~nv~rtVk~l~~AGaaGI~IEDq~-~PKrCGH~~gk~Lv-p~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gl 239 (462)
++....+.++.+.+ ++++|.|-=.. .+|.|.+..|..|. .++.+.+-+++++++ +..+.+--|..- .
T Consensus 82 ~~~~~~~~aa~~~~~-~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~----~~pVsvKir~g~----~- 151 (233)
T cd02911 82 SSLEPLLNAAALVAK-NAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKET----GVPVSVKIRAGV----D- 151 (233)
T ss_pred CCHHHHHHHHHHHhh-cCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhc----CCCEEEEEcCCc----C-
Confidence 57778888888876 56888886663 34445544454443 455555555555542 234444444321 1
Q ss_pred HHHHHHHHHhHhcCCcEEEecCCC-----CHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcCCCEEeccc
Q 012478 240 EESLRRSRAFADAGADVLFIDALA-----SKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPL 311 (462)
Q Consensus 240 deAI~RakAy~eAGAD~Ifie~~~-----s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~ 311 (462)
++.++-++.++++|+|+|-+.... +.+.++++. . .+|+..| |+-+-.-+..++-+.|...|.++-
T Consensus 152 ~~~~~la~~l~~aG~d~ihv~~~~~g~~ad~~~I~~i~--~-~ipVIgn----GgI~s~eda~~~l~~GaD~VmiGR 221 (233)
T cd02911 152 VDDEELARLIEKAGADIIHVDAMDPGNHADLKKIRDIS--T-ELFIIGN----NSVTTIESAKEMFSYGADMVSVAR 221 (233)
T ss_pred cCHHHHHHHHHHhCCCEEEECcCCCCCCCcHHHHHHhc--C-CCEEEEE----CCcCCHHHHHHHHHcCCCEEEEcC
Confidence 466778899999999988765532 334454443 2 3676655 332211234555556777776654
No 148
>PLN02591 tryptophan synthase
Probab=95.76 E-value=0.83 Score=45.75 Aligned_cols=173 Identities=16% Similarity=0.234 Sum_probs=106.5
Q ss_pred HHHHHhCCcEEEec-cHHHHhhhccCCCC------------CCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHH---H
Q 012478 103 KLVEKSGFSFCFTS-GFSISAARLALPDT------------GFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAM---N 166 (462)
Q Consensus 103 rl~e~aGfdaI~vS-G~avSas~lG~PD~------------g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~---n 166 (462)
+.+.++|+|.|=++ -+. -.+.|. .-+++++.++.++.+++..++|++ =.+|-|+. .
T Consensus 23 ~~l~~~Gad~iElGiPfS-----DP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~i---lm~Y~N~i~~~G 94 (250)
T PLN02591 23 RLLDACGADVIELGVPYS-----DPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIV---LFTYYNPILKRG 94 (250)
T ss_pred HHHHHCCCCEEEECCCCC-----CCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEE---EEecccHHHHhH
Confidence 44566788887765 211 112221 246788889999999877789987 35788862 4
Q ss_pred HHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEE-ecchhhcccHHHHHHH
Q 012478 167 VKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVA-RTDSRQALSLEESLRR 245 (462)
Q Consensus 167 v~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiA-RTDA~~~~gldeAI~R 245 (462)
+.+-++++.++|++|+.|=|= |.||..+-+.++.+. |-+++... =|-. -+|
T Consensus 95 ~~~F~~~~~~aGv~GviipDL---------------P~ee~~~~~~~~~~~----gl~~I~lv~Ptt~---------~~r 146 (250)
T PLN02591 95 IDKFMATIKEAGVHGLVVPDL---------------PLEETEALRAEAAKN----GIELVLLTTPTTP---------TER 146 (250)
T ss_pred HHHHHHHHHHcCCCEEEeCCC---------------CHHHHHHHHHHHHHc----CCeEEEEeCCCCC---------HHH
Confidence 566788899999999999773 456665554444333 44554443 3321 237
Q ss_pred HHHhHhcCCcEEEecC---CC-----CHHHHHHHH---HhCCCCceeeeeeecCCCCCCCCHHHHHhcCCCEEeccchHH
Q 012478 246 SRAFADAGADVLFIDA---LA-----SKEEMKAFC---EISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLI 314 (462)
Q Consensus 246 akAy~eAGAD~Ifie~---~~-----s~eei~~i~---~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~ll 314 (462)
.+++.+..-..|++-+ ++ ..+++..+. +....+|+++ .+|-++| =..+++.++|..-|+.++.++
T Consensus 147 i~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~v---GFGI~~~-e~v~~~~~~GADGvIVGSalV 222 (250)
T PLN02591 147 MKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVTDKPVAV---GFGISKP-EHAKQIAGWGADGVIVGSAMV 222 (250)
T ss_pred HHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCceEE---eCCCCCH-HHHHHHHhcCCCEEEECHHHH
Confidence 7777777777787633 11 123333332 2233466653 2322222 245778889999999999775
Q ss_pred H
Q 012478 315 G 315 (462)
Q Consensus 315 ~ 315 (462)
.
T Consensus 223 k 223 (250)
T PLN02591 223 K 223 (250)
T ss_pred H
Confidence 4
No 149
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=95.71 E-value=1.3 Score=41.57 Aligned_cols=153 Identities=21% Similarity=0.207 Sum_probs=85.8
Q ss_pred HHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEE
Q 012478 104 LVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGII 183 (462)
Q Consensus 104 l~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~ 183 (462)
.+.++|++.+.+ -.+|.....+.+.+...+.+++..++|++++ ..++.+.++|++|||
T Consensus 29 ~~~~~gv~~v~l----------r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~~a~~~gad~vh 86 (212)
T PRK00043 29 AALEGGVTLVQL----------REKGLDTRERLELARALKELCRRYGVPLIVN------------DRVDLALAVGADGVH 86 (212)
T ss_pred HHHhcCCCEEEE----------eCCCCCHHHHHHHHHHHHHHHHHhCCeEEEe------------ChHHHHHHcCCCEEe
Confidence 345568877643 2334222222233444445555678898885 134677789999999
Q ss_pred eCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEecCC-
Q 012478 184 LEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDAL- 262 (462)
Q Consensus 184 IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~~- 262 (462)
+..... +.. .+.++ .+.+..+-.-+ +..+ .+....+.|||.|++..+
T Consensus 87 ~~~~~~-------------~~~-~~~~~---------~~~~~~~g~~~-----~t~~----e~~~a~~~gaD~v~~~~~~ 134 (212)
T PRK00043 87 LGQDDL-------------PVA-DARAL---------LGPDAIIGLST-----HTLE----EAAAALAAGADYVGVGPIF 134 (212)
T ss_pred cCcccC-------------CHH-HHHHH---------cCCCCEEEEeC-----CCHH----HHHHHhHcCCCEEEECCcc
Confidence 954320 111 11111 12233332222 2223 355556799999986322
Q ss_pred -----------CCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 012478 263 -----------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (462)
Q Consensus 263 -----------~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~ll~ 315 (462)
...+.++++++.++.+|+. ..||-++ -+..++.+.|+..+..+..++.
T Consensus 135 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~----a~GGI~~-~~i~~~~~~Ga~gv~~gs~i~~ 193 (212)
T PRK00043 135 PTPTKKDAKAPQGLEGLREIRAAVGDIPIV----AIGGITP-ENAPEVLEAGADGVAVVSAITG 193 (212)
T ss_pred CCCCCCCCCCCCCHHHHHHHHHhcCCCCEE----EECCcCH-HHHHHHHHcCCCEEEEeHHhhc
Confidence 1156788888776534543 2235443 3567889999999999877664
No 150
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=95.67 E-value=0.2 Score=52.92 Aligned_cols=160 Identities=12% Similarity=0.089 Sum_probs=89.9
Q ss_pred HHHHHHHhCCcEEEec-cHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHHhCc
Q 012478 101 SAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGF 179 (462)
Q Consensus 101 SArl~e~aGfdaI~vS-G~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~AGa 179 (462)
.|+.++++|+|+|=+- |.-......|.-....-..+.+.+.++.+.+.+++||++=+--.+. ++...++.++++||
T Consensus 118 ~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~Pv~vKl~p~~~---~~~~~a~~~~~~Ga 194 (420)
T PRK08318 118 IAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSRLPVIVKLTPNIT---DIREPARAAKRGGA 194 (420)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccCCcEEEEcCCCcc---cHHHHHHHHHHCCC
Confidence 4577788898887764 3221000001101111234566667777777788999999864333 46677788899999
Q ss_pred cEEEeCCCCC-------------C-----CCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHH
Q 012478 180 AGIILEDQVS-------------P-----KGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEE 241 (462)
Q Consensus 180 aGI~IEDq~~-------------P-----KrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~glde 241 (462)
+||.+-.... | -..|...|+.+.|.. .+.|+.+.++.. ..++-|+|=.+-.. .+
T Consensus 195 dgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~--l~~v~~~~~~~~--~~~ipIig~GGI~s---~~- 266 (420)
T PRK08318 195 DAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIA--LNMVAEIARDPE--TRGLPISGIGGIET---WR- 266 (420)
T ss_pred CEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHH--HHHHHHHHhccc--cCCCCEEeecCcCC---HH-
Confidence 9999533321 1 123334566665543 344444433321 13678888665542 24
Q ss_pred HHHHHHHhHhcCCcEEEecC--C-CCHHHHHHHHHh
Q 012478 242 SLRRSRAFADAGADVLFIDA--L-ASKEEMKAFCEI 274 (462)
Q Consensus 242 AI~RakAy~eAGAD~Ifie~--~-~s~eei~~i~~~ 274 (462)
.+..|..||||+|.+-. + ...+.+.++.+.
T Consensus 267 ---da~e~i~aGA~~Vqi~ta~~~~gp~ii~~I~~~ 299 (420)
T PRK08318 267 ---DAAEFILLGAGTVQVCTAAMQYGFRIVEDMISG 299 (420)
T ss_pred ---HHHHHHHhCCChheeeeeeccCCchhHHHHHHH
Confidence 35556679999987632 1 133455555543
No 151
>PRK04302 triosephosphate isomerase; Provisional
Probab=95.63 E-value=0.31 Score=47.25 Aligned_cols=140 Identities=20% Similarity=0.192 Sum_probs=81.0
Q ss_pred HhhcCCcEEEe-CCC-CCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCC
Q 012478 146 TQAVSIPVIGD-GDN-GYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGS 223 (462)
Q Consensus 146 ~ra~~iPVIaD-~Dt-GyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~ 223 (462)
++.+++||++- .+. .+|- -.....++++.++|++||.|-|.. ...+.+|..++++++.+. |-
T Consensus 52 ~~~~~i~v~aq~~~~~~~G~-~tg~~~~~~l~~~G~~~vii~~se-----------r~~~~~e~~~~v~~a~~~----Gl 115 (223)
T PRK04302 52 AEEVDIPVYAQHVDPVEPGS-HTGHILPEAVKDAGAVGTLINHSE-----------RRLTLADIEAVVERAKKL----GL 115 (223)
T ss_pred HHhcCCeEEeccCCCCCCCC-chhhhHHHHHHHcCCCEEEEeccc-----------cccCHHHHHHHHHHHHHC----CC
Confidence 33357898862 222 2331 122344788888999999885431 124556766777666543 43
Q ss_pred CeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEecCC-----------CCHHHHHHHHHhCC----CCceeeeeeecC
Q 012478 224 DIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDAL-----------ASKEEMKAFCEISP----LVPKMANMLEGG 288 (462)
Q Consensus 224 d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~~-----------~s~eei~~i~~~v~----~vP~~~N~l~~~ 288 (462)
..++...+ .++++.+.+.|.|.|.++.. .+.+.+.++.+.+. .+|+ +.++
T Consensus 116 ~~I~~v~~-----------~~~~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pv----i~Gg 180 (223)
T PRK04302 116 ESVVCVNN-----------PETSAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKV----LCGA 180 (223)
T ss_pred eEEEEcCC-----------HHHHHHHhcCCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEE----EEEC
Confidence 44444333 23555667889999987542 23455655544332 2343 3333
Q ss_pred CCCCCCCHHHHHhcCCCEEeccchHHHH
Q 012478 289 GKTPILNPLELEELGFKLVAYPLSLIGV 316 (462)
Q Consensus 289 g~tP~ls~~eL~~lGv~~V~yp~~ll~a 316 (462)
|-.+.=..+++.+.|++-|+.+..++.+
T Consensus 181 gI~~~e~~~~~~~~gadGvlVGsa~l~~ 208 (223)
T PRK04302 181 GISTGEDVKAALELGADGVLLASGVVKA 208 (223)
T ss_pred CCCCHHHHHHHHcCCCCEEEEehHHhCC
Confidence 4322224566778999999999887754
No 152
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=95.56 E-value=3.2 Score=42.15 Aligned_cols=117 Identities=12% Similarity=0.099 Sum_probs=72.2
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHhh---cCCcEEEeCCCCCCCHHHHHHHHHHHHHh---CccEEEeCCCCCCCCCCCCCC
Q 012478 125 LALPDTGFISYGEMVDQGQLITQA---VSIPVIGDGDNGYGNAMNVKRTVKGYIKA---GFAGIILEDQVSPKGCGHTRG 198 (462)
Q Consensus 125 lG~PD~g~vsl~Eml~~~~~I~ra---~~iPVIaD~DtGyG~~~nv~rtVk~l~~A---GaaGI~IEDq~~PKrCGH~~g 198 (462)
.|++. ..++.++++.+...+. .+.||++-+ +| ++....+.++++++. |+++|-|-=. |-|..+
T Consensus 66 ~G~~n---~g~~~~~~~i~~~~~~~~~~~~pvivsi-~g--~~~~~~~~~~~~~~~~~~~ad~ielN~s-----CPn~~~ 134 (294)
T cd04741 66 LGLPN---LGLDYYLEYIRTISDGLPGSAKPFFISV-TG--SAEDIAAMYKKIAAHQKQFPLAMELNLS-----CPNVPG 134 (294)
T ss_pred ccCCC---cCHHHHHHHHHHHhhhccccCCeEEEEC-CC--CHHHHHHHHHHHHhhccccccEEEEECC-----CCCCCC
Confidence 35544 4477888887776543 468999988 33 377778888888875 7999887554 556533
Q ss_pred C-ccc-CHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhc--CCcEEEe
Q 012478 199 R-KVV-SREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADA--GADVLFI 259 (462)
Q Consensus 199 k-~Lv-p~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eA--GAD~Ifi 259 (462)
+ .+. +.+.+.+-+++++++.. .++.+-=|-+. +.++..+-|....++ |||.|.+
T Consensus 135 ~~~~~~~~~~~~~i~~~v~~~~~---iPv~vKl~p~~----~~~~~~~~a~~l~~~~~G~~gi~~ 192 (294)
T cd04741 135 KPPPAYDFDATLEYLTAVKAAYS---IPVGVKTPPYT----DPAQFDTLAEALNAFACPISFITA 192 (294)
T ss_pred cccccCCHHHHHHHHHHHHHhcC---CCEEEEeCCCC----CHHHHHHHHHHHhccccCCcEEEE
Confidence 3 232 45555555555555432 35555544332 234445556666777 9998873
No 153
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=95.49 E-value=0.45 Score=48.95 Aligned_cols=139 Identities=19% Similarity=0.228 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHhCccEEEeCCCC--------CC---CCCCCCCCCcccC-HHHHHHHHHHHHHHHHhhCCCeEEEEecch
Q 012478 166 NVKRTVKGYIKAGFAGIILEDQV--------SP---KGCGHTRGRKVVS-REEAVMRIKAAVDARKESGSDIVIVARTDS 233 (462)
Q Consensus 166 nv~rtVk~l~~AGaaGI~IEDq~--------~P---KrCGH~~gk~Lvp-~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA 233 (462)
+..+++++..++|.+||.|--.- .| ||-..-+| .|-. ..-.++.|++++++ .|+||.|..|.-.
T Consensus 150 ~~~~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGG-slenR~rf~~EiI~aIR~a---vG~d~~v~vris~ 225 (338)
T cd04733 150 RFAHAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGG-SLENRARLLLEIYDAIRAA---VGPGFPVGIKLNS 225 (338)
T ss_pred HHHHHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCC-CHHHHHHHHHHHHHHHHHH---cCCCCeEEEEEcH
Confidence 34456778888999999996542 23 33222233 2222 23344556666555 3678888888653
Q ss_pred h----hcccHHHHHHHHHHhHhcCCcEEEecCC-----C-----C----------HHHHHHHHHhCCCCceeeeeeecCC
Q 012478 234 R----QALSLEESLRRSRAFADAGADVLFIDAL-----A-----S----------KEEMKAFCEISPLVPKMANMLEGGG 289 (462)
Q Consensus 234 ~----~~~gldeAI~RakAy~eAGAD~Ifie~~-----~-----s----------~eei~~i~~~v~~vP~~~N~l~~~g 289 (462)
. .....+|+++-++.++++|+|.|=+.+- . . .+..+++.+.+. +|++++ ++
T Consensus 226 ~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~-iPVi~~----G~ 300 (338)
T cd04733 226 ADFQRGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTK-TPLMVT----GG 300 (338)
T ss_pred HHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHcC-CCEEEe----CC
Confidence 2 2346789999999999999999865321 0 0 244556666665 676654 12
Q ss_pred C-CCCCCHHHHHhcC-CCEEeccchHH
Q 012478 290 K-TPILNPLELEELG-FKLVAYPLSLI 314 (462)
Q Consensus 290 ~-tP~ls~~eL~~lG-v~~V~yp~~ll 314 (462)
- +| -..+++-+.| +..|.++-.++
T Consensus 301 i~t~-~~a~~~l~~g~aD~V~lgR~~i 326 (338)
T cd04733 301 FRTR-AAMEQALASGAVDGIGLARPLA 326 (338)
T ss_pred CCCH-HHHHHHHHcCCCCeeeeChHhh
Confidence 1 11 1233444444 78877765444
No 154
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=95.45 E-value=1.1 Score=43.02 Aligned_cols=141 Identities=22% Similarity=0.192 Sum_probs=80.1
Q ss_pred HHHHHHHhhcCCcEE---E-eC---CCC-CCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCc-ccCHHHHHHH
Q 012478 140 DQGQLITQAVSIPVI---G-DG---DNG-YGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRK-VVSREEAVMR 210 (462)
Q Consensus 140 ~~~~~I~ra~~iPVI---a-D~---DtG-yG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~-Lvp~ee~~~k 210 (462)
+..+.+.+.+++|++ - |. +.- ++ ..+.++.+.++||+.|.+ |-. +.. ++ .....+++++
T Consensus 46 ~~i~~i~~~~~~Pil~~~~~d~~~~~~~~~~----~~~~v~~a~~aGad~I~~-d~~------~~~-~p~~~~~~~~i~~ 113 (221)
T PRK01130 46 EDIKAIRAVVDVPIIGIIKRDYPDSEVYITP----TLKEVDALAAAGADIIAL-DAT------LRP-RPDGETLAELVKR 113 (221)
T ss_pred HHHHHHHHhCCCCEEEEEecCCCCCCceECC----CHHHHHHHHHcCCCEEEE-eCC------CCC-CCCCCCHHHHHHH
Confidence 344566666789987 2 31 111 12 234568888999997776 432 110 00 0122344444
Q ss_pred HHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEecC-----------CCCHHHHHHHHHhCCCCc
Q 012478 211 IKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDA-----------LASKEEMKAFCEISPLVP 279 (462)
Q Consensus 211 I~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~-----------~~s~eei~~i~~~v~~vP 279 (462)
+ ++. .++.++..+. . .++++...++|+|.|.+.. ....+.++++.+.+. +|
T Consensus 114 ~---~~~-----~~i~vi~~v~-----t----~ee~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~-iP 175 (221)
T PRK01130 114 I---KEY-----PGQLLMADCS-----T----LEEGLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVG-CP 175 (221)
T ss_pred H---HhC-----CCCeEEEeCC-----C----HHHHHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCC-CC
Confidence 3 221 2455555442 2 2356778899999997631 123567777777664 56
Q ss_pred eeeeeeecCCC-CCCCCHHHHHhcCCCEEeccchHHH
Q 012478 280 KMANMLEGGGK-TPILNPLELEELGFKLVAYPLSLIG 315 (462)
Q Consensus 280 ~~~N~l~~~g~-tP~ls~~eL~~lGv~~V~yp~~ll~ 315 (462)
+.+ .+|- +| -..+++.++|+.-|..+..++.
T Consensus 176 via----~GGI~t~-~~~~~~l~~GadgV~iGsai~~ 207 (221)
T PRK01130 176 VIA----EGRINTP-EQAKKALELGAHAVVVGGAITR 207 (221)
T ss_pred EEE----ECCCCCH-HHHHHHHHCCCCEEEEchHhcC
Confidence 542 2343 22 2457788899999999977654
No 155
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=95.45 E-value=0.075 Score=53.29 Aligned_cols=137 Identities=26% Similarity=0.285 Sum_probs=86.8
Q ss_pred HHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecc-hhhcccHHHHHHHHHH
Q 012478 170 TVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTD-SRQALSLEESLRRSRA 248 (462)
Q Consensus 170 tVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTD-A~~~~gldeAI~RakA 248 (462)
..+.++++|+++|-.-|...--..||.+. ..++.+||+..+++++++.. ..| |++=.. .....+.+++++++.+
T Consensus 24 sA~l~e~aG~d~i~vGds~~~~~lG~pDt-~~vtl~em~~~~~~V~r~~~---~p~-viaD~~fg~y~~~~~~av~~a~r 98 (254)
T cd06557 24 TAKLADEAGVDVILVGDSLGMVVLGYDST-LPVTLDEMIYHTRAVRRGAP---RAL-VVADMPFGSYQTSPEQALRNAAR 98 (254)
T ss_pred HHHHHHHcCCCEEEECHHHHHHHcCCCCC-CCcCHHHHHHHHHHHHhcCC---CCe-EEEeCCCCcccCCHHHHHHHHHH
Confidence 34677889999998766643233577543 47899999999999887753 234 444443 1123468999999776
Q ss_pred hHh-cCCcEEEecCCC-CHHHHHHHHHhCCCCcee---------eeeeec---CCCCCC------CCHHHHHhcCCCEEe
Q 012478 249 FAD-AGADVLFIDALA-SKEEMKAFCEISPLVPKM---------ANMLEG---GGKTPI------LNPLELEELGFKLVA 308 (462)
Q Consensus 249 y~e-AGAD~Ifie~~~-s~eei~~i~~~v~~vP~~---------~N~l~~---~g~tP~------ls~~eL~~lGv~~V~ 308 (462)
..+ +||++|.+|+-. ..+.++.++++ ++|++ .|.+.+ .|++.. -....|+++|...+.
T Consensus 99 ~~~~aGa~aVkiEd~~~~~~~I~al~~a--gipV~gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~AGA~~i~ 176 (254)
T cd06557 99 LMKEAGADAVKLEGGAEVAETIRALVDA--GIPVMGHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEEAGAFALV 176 (254)
T ss_pred HHHHhCCeEEEEcCcHHHHHHHHHHHHc--CCCeeccccccceeeeccCCceeccCCHHHHHHHHHHHHHHHHCCCCEEE
Confidence 666 999999999852 23445555543 23433 333311 122221 123568889999988
Q ss_pred ccchH
Q 012478 309 YPLSL 313 (462)
Q Consensus 309 yp~~l 313 (462)
.+...
T Consensus 177 lE~v~ 181 (254)
T cd06557 177 LECVP 181 (254)
T ss_pred EcCCC
Confidence 87654
No 156
>PRK12999 pyruvate carboxylase; Reviewed
Probab=95.44 E-value=0.82 Score=54.75 Aligned_cols=251 Identities=18% Similarity=0.164 Sum_probs=140.5
Q ss_pred HHHHHHh--CCcEEEecc-HHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCC--CCCC-HHHHHHH-HHHH
Q 012478 102 AKLVEKS--GFSFCFTSG-FSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDN--GYGN-AMNVKRT-VKGY 174 (462)
Q Consensus 102 Arl~e~a--GfdaI~vSG-~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~Dt--GyG~-~~nv~rt-Vk~l 174 (462)
|..++++ ||..|=++| ..+. +. ++-...=+ -|.+...+.....+.+-.+.-+-+ ||.+ +.++.+. ++..
T Consensus 561 a~~l~~~~~g~~siE~~ggatfd-~~--~r~l~e~p-~erl~~~r~~~~~~~~q~l~Rg~n~vgy~~yp~~v~~~~i~~a 636 (1146)
T PRK12999 561 APATARLLPNLFSLEMWGGATFD-VA--YRFLKEDP-WERLAELREAAPNVLFQMLLRGSNAVGYTNYPDNVVRAFVREA 636 (1146)
T ss_pred HHHHHHHhCCCCEEEeeCCcchh-hh--ccccCCCH-HHHHHHHHHhCCCCeEEEEecccccccccCCCchHHHHHHHHH
Confidence 4667788 999998884 3321 22 22222222 344444444333333445555555 5665 5666665 9999
Q ss_pred HHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCC-CeEEEEec----chh-hcccHHHHHHHHHH
Q 012478 175 IKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGS-DIVIVART----DSR-QALSLEESLRRSRA 248 (462)
Q Consensus 175 ~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~-d~vIiART----DA~-~~~gldeAI~RakA 248 (462)
.+.|++-++|=|.. . +. +.++.+.++.++.|. -.+-+.=| |+. ..+.++-.++-++.
T Consensus 637 ~~~Gid~~rifd~l--------n-----d~----~~~~~~i~~vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~ 699 (1146)
T PRK12999 637 AAAGIDVFRIFDSL--------N-----WV----ENMRVAIDAVRETGKIAEAAICYTGDILDPARAKYDLDYYVDLAKE 699 (1146)
T ss_pred HHcCCCEEEEeccC--------C-----hH----HHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHH
Confidence 99999999998853 1 12 334444444443332 12344445 543 34678888999999
Q ss_pred hHhcCCcEEEec---CCCCHHHHHHHHHhCCC-CceeeeeeecCCCCCCCC---HHHHHhcCCCEEeccchHH--HHHHH
Q 012478 249 FADAGADVLFID---ALASKEEMKAFCEISPL-VPKMANMLEGGGKTPILN---PLELEELGFKLVAYPLSLI--GVSVR 319 (462)
Q Consensus 249 y~eAGAD~Ifie---~~~s~eei~~i~~~v~~-vP~~~N~l~~~g~tP~ls---~~eL~~lGv~~V~yp~~ll--~aa~~ 319 (462)
+.++|||.|.+- |+-+++++.++.+.+.. +.+++.+ +.+ .+..+. .-.--++|++.|-.....+ ++..-
T Consensus 700 l~~~Ga~~i~ikDt~G~l~P~~~~~lv~~lk~~~~ipi~~-H~H-nt~Gla~an~laA~~aGad~vD~av~glg~~tgn~ 777 (1146)
T PRK12999 700 LEKAGAHILAIKDMAGLLKPAAAYELVSALKEEVDLPIHL-HTH-DTSGNGLATYLAAAEAGVDIVDVAVASMSGLTSQP 777 (1146)
T ss_pred HHHcCCCEEEECCccCCCCHHHHHHHHHHHHHHcCCeEEE-EeC-CCCchHHHHHHHHHHhCCCEEEecchhhcCCcCCH
Confidence 999999999884 45566677666654321 1233332 221 233333 3445678999988766655 45566
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCcccHHHHHHhhcccccccccccccCCCCCCCC
Q 012478 320 AMQDALTAIKGGRIPSPGSMPSFQEIKETLGFNTYYEEEKRYATSMRRLSSENVTSNSYDTQP 382 (462)
Q Consensus 320 Am~~~l~~l~~g~~~~~~~~~s~~e~~~lvg~~~~~~~e~~y~~~~~~~~~~~~~~~~~~~~~ 382 (462)
+++..+..|+..+.. ..+.++.+.++-.+ |.+....|...+..+. .....+|..|-
T Consensus 778 ~le~vv~~L~~~~~~---t~idl~~l~~~s~~--~~~~r~~y~~~~~~~~--~~~~~v~~~~~ 833 (1146)
T PRK12999 778 SLNSIVAALEGTERD---TGLDLDAIRKLSPY--WEAVRPYYAPFESGLK--SPTTEVYLHEM 833 (1146)
T ss_pred HHHHHHHHHHhcCCC---CCcCHHHHHHHHHH--HHHHHhHhhccCCCCC--CCCcCeEEecC
Confidence 677777777643222 12344444433322 4445556656555442 33445665553
No 157
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=95.38 E-value=0.57 Score=47.08 Aligned_cols=79 Identities=15% Similarity=0.057 Sum_probs=52.7
Q ss_pred HHHHHHhC--CcEEEec-cHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHHhC
Q 012478 102 AKLVEKSG--FSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAG 178 (462)
Q Consensus 102 Arl~e~aG--fdaI~vS-G~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~AG 178 (462)
|+.+++++ ++++=+- |.-.. -|+-+.-.-..+.+.+.++.|.+.+++||++-+.. +..+..+.++.++++|
T Consensus 109 a~~~~~~~~~~d~ielN~~cP~~---~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~~---~~~~~~~~a~~l~~~G 182 (300)
T TIGR01037 109 AEKLEKAPPYVDAYELNLSCPHV---KGGGIAIGQDPELSADVVKAVKDKTDVPVFAKLSP---NVTDITEIAKAAEEAG 182 (300)
T ss_pred HHHHHhccCccCEEEEECCCCCC---CCCccccccCHHHHHHHHHHHHHhcCCCEEEECCC---ChhhHHHHHHHHHHcC
Confidence 56666653 7877765 22211 13222222345667777888888889999999863 3346677888999999
Q ss_pred ccEEEeCC
Q 012478 179 FAGIILED 186 (462)
Q Consensus 179 aaGI~IED 186 (462)
+++|++-.
T Consensus 183 ~d~i~v~n 190 (300)
T TIGR01037 183 ADGLTLIN 190 (300)
T ss_pred CCEEEEEc
Confidence 99999853
No 158
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=95.37 E-value=0.77 Score=51.27 Aligned_cols=270 Identities=17% Similarity=0.173 Sum_probs=142.3
Q ss_pred HHHHHhCCCceEecccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhc-CCcEEEe--C
Q 012478 81 LRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV-SIPVIGD--G 157 (462)
Q Consensus 81 LR~ll~~~~~iv~p~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~-~iPVIaD--~ 157 (462)
||.-+++.....++...-..-|..+.++||+.|=++|.+...+.+.+ ++ ++-.+..+.+++.. +.++.+= .
T Consensus 11 lRDG~Qs~~atr~~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rf-----l~-edp~e~l~~l~~~~~~~~l~~l~Rg 84 (592)
T PRK09282 11 LRDAHQSLLATRMRTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRY-----LN-EDPWERLRKLKKALPNTPLQMLLRG 84 (592)
T ss_pred CCccccccCCccCCHHHHHHHHHHHHHcCCCEEEecCCccchhhccc-----CC-ccHHHHHHHHHHhCCCCEEEEEecc
Confidence 44444443222333333334566788899999988742221111111 11 12344555655553 4665544 4
Q ss_pred CC--CCCC-HHHHH-HHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEE---Ee
Q 012478 158 DN--GYGN-AMNVK-RTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIV---AR 230 (462)
Q Consensus 158 Dt--GyG~-~~nv~-rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIi---AR 230 (462)
.+ ||.+ +.++. ..+++..++|++-++|-|... +.+ .++.+++..++.| +.+. .=
T Consensus 85 ~N~~gy~~ypd~vv~~~v~~A~~~Gvd~irif~~ln-------------d~~----n~~~~i~~ak~~G--~~v~~~i~~ 145 (592)
T PRK09282 85 QNLVGYRHYPDDVVEKFVEKAAENGIDIFRIFDALN-------------DVR----NMEVAIKAAKKAG--AHVQGTISY 145 (592)
T ss_pred ccccccccccchhhHHHHHHHHHCCCCEEEEEEecC-------------hHH----HHHHHHHHHHHcC--CEEEEEEEe
Confidence 44 6665 45544 558888999999999988742 112 3333333333333 2222 22
Q ss_pred cchhhcccHHHHHHHHHHhHhcCCcEEEec---CCCCHHHHHHHHHhCCC-CceeeeeeecCCCCCCCC---HHHHHhcC
Q 012478 231 TDSRQALSLEESLRRSRAFADAGADVLFID---ALASKEEMKAFCEISPL-VPKMANMLEGGGKTPILN---PLELEELG 303 (462)
Q Consensus 231 TDA~~~~gldeAI~RakAy~eAGAD~Ifie---~~~s~eei~~i~~~v~~-vP~~~N~l~~~g~tP~ls---~~eL~~lG 303 (462)
|++ ..+.++..++-++.+.++|||.|.+- |.-.++++.++++.+.. +++++.+ +.+ .+..+. .-.--+.|
T Consensus 146 t~~-p~~t~~~~~~~a~~l~~~Gad~I~i~Dt~G~~~P~~~~~lv~~lk~~~~~pi~~-H~H-nt~Gla~An~laAv~aG 222 (592)
T PRK09282 146 TTS-PVHTIEKYVELAKELEEMGCDSICIKDMAGLLTPYAAYELVKALKEEVDLPVQL-HSH-CTSGLAPMTYLKAVEAG 222 (592)
T ss_pred ccC-CCCCHHHHHHHHHHHHHcCCCEEEECCcCCCcCHHHHHHHHHHHHHhCCCeEEE-EEc-CCCCcHHHHHHHHHHhC
Confidence 332 23568889999999999999999984 45567777777755321 2233332 211 133333 34455779
Q ss_pred CCEEeccchHH--HHHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCcccHHHHHHhhcccccccccccccCCCCCCC
Q 012478 304 FKLVAYPLSLI--GVSVRAMQDALTAIKGGRIPSPGSMPSFQEIKETLGFNTYYEEEKRYATSMRRLSSENVTSNSYDTQ 381 (462)
Q Consensus 304 v~~V~yp~~ll--~aa~~Am~~~l~~l~~g~~~~~~~~~s~~e~~~lvg~~~~~~~e~~y~~~~~~~~~~~~~~~~~~~~ 381 (462)
++.|=-....+ ++..-+++..+..|...+... ...++.+.++-.+ +.++-+.|..-+... ...+.++|.+|
T Consensus 223 ad~vD~ai~g~g~~agn~~~e~vv~~L~~~g~~~---~idl~~l~~~s~~--~~~~~~~y~~~~~~~--~~~~~~v~~~~ 295 (592)
T PRK09282 223 VDIIDTAISPLAFGTSQPPTESMVAALKGTPYDT---GLDLELLFEIAEY--FREVRKKYKQFESEF--TIVDTRVLIHQ 295 (592)
T ss_pred CCEEEeeccccCCCcCCHhHHHHHHHHHhCCCCC---ccCHHHHHHHHHH--HHHHHHHhhcCCCcc--ccCCccEEEEc
Confidence 88875544433 445556666666665432221 2234444333322 445556665433321 23455566655
Q ss_pred CCCc
Q 012478 382 PMAQ 385 (462)
Q Consensus 382 ~~~~ 385 (462)
-..-
T Consensus 296 ~pGg 299 (592)
T PRK09282 296 VPGG 299 (592)
T ss_pred CCCc
Confidence 4433
No 159
>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E. coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.
Probab=95.36 E-value=4.5 Score=42.75 Aligned_cols=231 Identities=10% Similarity=0.037 Sum_probs=135.5
Q ss_pred HHHHHHHH----hCCCceEecccCChHHHHHH----HHhCCcEEEeccHHHHhhhcc--C----CCCC-CCCHHHHHHHH
Q 012478 78 AKSLRQIL----ELPGVHQGPACFDALSAKLV----EKSGFSFCFTSGFSISAARLA--L----PDTG-FISYGEMVDQG 142 (462)
Q Consensus 78 a~~LR~ll----~~~~~iv~p~ayDalSArl~----e~aGfdaI~vSG~avSas~lG--~----PD~g-~vsl~Eml~~~ 142 (462)
...|+++| +++-.+.+.|+|+.-+++.+ |+..-+.|+..+-+...-..| + ||.. .+....+...+
T Consensus 12 ~~~~~~lL~~A~~~~yAVgAfNv~n~e~~~Avi~AAEe~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v 91 (357)
T TIGR01520 12 GDDVHKLFQYAKENNFAIPAINCTSSSTINAALEAAADVKSPIIIQFSNGGAAFIAGKGVKDEVPQGASILGAIAGAHHV 91 (357)
T ss_pred HHHHHHHHHHHHHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhcCCcccccccchhhhhhhHHHHHHHH
Confidence 34455554 34445788899999998754 566889888775433211112 3 4443 34555677788
Q ss_pred HHHHhhcCCcEEEeCCCCCCC-HHHHHHHHHH----HHHhC---ccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHH
Q 012478 143 QLITQAVSIPVIGDGDNGYGN-AMNVKRTVKG----YIKAG---FAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAA 214 (462)
Q Consensus 143 ~~I~ra~~iPVIaD~DtGyG~-~~nv~rtVk~----l~~AG---aaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA 214 (462)
+.+++..++||.+=.|+|.-- ...+.+.++. ++..| ...|.| |.. | .|.||=++.-+.+
T Consensus 92 ~~~Ae~a~VPValHLDHg~~~~~~~i~~ai~ag~~~~~~~g~~gftSVMi-DgS------~------lpfeENI~~Trev 158 (357)
T TIGR01520 92 HSIAEHYGVPVVLHTDHCAKKLLPWVDGLLEAGEKYFSAHGKPLFSSHMI-DLS------E------EPIEENIEICVKY 158 (357)
T ss_pred HHHHHHCCCCEEEECCCCCCcchHHHHHHHHhhhhhhhhcCCCCCceEEe-eCC------C------CCHHHHHHHHHHH
Confidence 888888899999999999532 1223333322 23344 999999 442 3 4567777776666
Q ss_pred HHHHHhhCC----CeEEE-Eecchhh---------cccHHHHHHHHHHhHh-----cCCcEEEe-----cCCC-------
Q 012478 215 VDARKESGS----DIVIV-ARTDSRQ---------ALSLEESLRRSRAFAD-----AGADVLFI-----DALA------- 263 (462)
Q Consensus 215 ~~Ar~~~g~----d~vIi-ARTDA~~---------~~gldeAI~RakAy~e-----AGAD~Ifi-----e~~~------- 263 (462)
++-+...|. ++=.+ +..|... -... +.|+.|.+ -|+|++-+ +++-
T Consensus 159 Ve~Ah~~GvsVEaELG~vgG~Ed~~~~~~~~~~~~yTdP----eeA~~Fv~~t~~~TgvD~LAvAiGT~HG~Yk~~~p~L 234 (357)
T TIGR01520 159 LKRMAKIKMWLEIEIGITGGEEDGVDNSHMDAEALYTQP----EDVYYAYEELSKISPNFSIAAAFGNVHGVYKPGNVKL 234 (357)
T ss_pred HHHHHHcCCEEEEEecccCCccCCcccccccccccCCCH----HHHHHHHHHhccCCCcceeeeeeccccCCcCCCCCcc
Confidence 666553221 01011 1111100 0122 34666654 28898753 3332
Q ss_pred CHHHHHHHH----HhCCCCc----eeeeeeecCCCCCCCCHHHHHhcCCCEEeccchHHHHHHHHHHHHHHH
Q 012478 264 SKEEMKAFC----EISPLVP----KMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVSVRAMQDALTA 327 (462)
Q Consensus 264 s~eei~~i~----~~v~~vP----~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~ll~aa~~Am~~~l~~ 327 (462)
+.+.+++|. +.++ +| .++ ++.|+...|.-...+.-++|++-|-+..-+..+...++++.+..
T Consensus 235 d~d~L~~I~~~~~~~~~-vP~~~~~pL-VLHGgSGi~~e~i~kai~~GI~KINi~Tdl~~A~~~a~~~~~~~ 304 (357)
T TIGR01520 235 TPDILADGQEYVSEKLG-LPAAKPLFF-VFHGGSGSTKQEIKEALSYGVVKMNIDTDTQWAYWEGILNYYKN 304 (357)
T ss_pred CHHHHHHHHHHHHHhcC-CCcCCCCcE-EEeCCCCCCHHHHHHHHHCCCeEEEeCcHHHHHHHHHHHHHHHh
Confidence 356677773 4443 45 222 45553323322234445789999999999999999999998753
No 160
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=95.32 E-value=0.6 Score=46.40 Aligned_cols=178 Identities=14% Similarity=0.212 Sum_probs=101.5
Q ss_pred ChHH-HHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHH
Q 012478 98 DALS-AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIK 176 (462)
Q Consensus 98 DalS-Arl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~ 176 (462)
|+.. |+..++.|++.+++.-..-+ ..+.+ ..++..+.|++.+++||+++. |..+... ++++..
T Consensus 31 dp~~~a~~~~~~g~~~l~i~Dl~~~--~~~~~--------~n~~~i~~i~~~~~~pv~~gG--Gi~s~~d----~~~l~~ 94 (258)
T PRK01033 31 DPINAVRIFNEKEVDELIVLDIDAS--KRGSE--------PNYELIENLASECFMPLCYGG--GIKTLEQ----AKKIFS 94 (258)
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCC--cCCCc--------ccHHHHHHHHHhCCCCEEECC--CCCCHHH----HHHHHH
Confidence 4443 57778899999999854321 11111 235566778887889999885 4444433 456667
Q ss_pred hCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeE---EEEecc-----hhh-----cccHHHHH
Q 012478 177 AGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIV---IVARTD-----SRQ-----ALSLEESL 243 (462)
Q Consensus 177 AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~v---IiARTD-----A~~-----~~gldeAI 243 (462)
+|+.+|.|- .. ++..-+++.++.... +.+-+ |-.|.. ... ...-...+
T Consensus 95 ~G~~~vvig-s~------------~~~~~~~~~~~~~~~------~~~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~ 155 (258)
T PRK01033 95 LGVEKVSIN-TA------------ALEDPDLITEAAERF------GSQSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPL 155 (258)
T ss_pred CCCCEEEEC-hH------------HhcCHHHHHHHHHHh------CCCcEEEEEEEecCCCCcEEEEEcCCeecCCCCHH
Confidence 899999883 21 111113333332221 11111 112211 000 00001235
Q ss_pred HHHHHhHhcCCcEEEecCCC--------CHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHH-hcCCCEEeccchHH
Q 012478 244 RRSRAFADAGADVLFIDALA--------SKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELE-ELGFKLVAYPLSLI 314 (462)
Q Consensus 244 ~RakAy~eAGAD~Ifie~~~--------s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~-~lGv~~V~yp~~ll 314 (462)
+-++.+.++|++.+.+..+. +.+.++++++.++ +|+.++ ||-...=+..+|. +.|+.-|+.+..+.
T Consensus 156 e~~~~~~~~g~~~ii~~~i~~~G~~~G~d~~~i~~~~~~~~-ipvIas----GGv~s~eD~~~l~~~~GvdgVivg~a~~ 230 (258)
T PRK01033 156 ELAKEYEALGAGEILLNSIDRDGTMKGYDLELLKSFRNALK-IPLIAL----GGAGSLDDIVEAILNLGADAAAAGSLFV 230 (258)
T ss_pred HHHHHHHHcCCCEEEEEccCCCCCcCCCCHHHHHHHHhhCC-CCEEEe----CCCCCHHHHHHHHHHCCCCEEEEcceee
Confidence 66777889999999988653 4678899988765 676543 3432212345555 78999999887665
Q ss_pred H
Q 012478 315 G 315 (462)
Q Consensus 315 ~ 315 (462)
+
T Consensus 231 ~ 231 (258)
T PRK01033 231 F 231 (258)
T ss_pred e
Confidence 5
No 161
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=95.27 E-value=2.8 Score=40.91 Aligned_cols=177 Identities=23% Similarity=0.263 Sum_probs=96.1
Q ss_pred cccCChHHHHHHHHhCCcEEEecc-HHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEe-----CCCCCCCH--H
Q 012478 94 PACFDALSAKLVEKSGFSFCFTSG-FSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGD-----GDNGYGNA--M 165 (462)
Q Consensus 94 p~ayDalSArl~e~aGfdaI~vSG-~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD-----~DtGyG~~--~ 165 (462)
.++.+.-+|+.+++.|+|-|=+-+ +. ..|+.|--.++..++ +..++||.+= .|+=|.+. .
T Consensus 5 vcv~s~~~a~~A~~~GAdRiELc~~l~---------~GGlTPS~g~i~~~~---~~~~ipv~vMIRpr~gdF~Ys~~E~~ 72 (201)
T PF03932_consen 5 VCVESLEDALAAEAGGADRIELCSNLE---------VGGLTPSLGLIRQAR---EAVDIPVHVMIRPRGGDFVYSDEEIE 72 (201)
T ss_dssp EEESSHHHHHHHHHTT-SEEEEEBTGG---------GT-B---HHHHHHHH---HHTTSEEEEE--SSSS-S---HHHHH
T ss_pred EEeCCHHHHHHHHHcCCCEEEECCCcc---------CCCcCcCHHHHHHHH---hhcCCceEEEECCCCCCccCCHHHHH
Confidence 368899999999999999886654 22 123333334444443 3677887653 33336543 3
Q ss_pred HHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEe-cchhhcccHHHHHH
Q 012478 166 NVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVAR-TDSRQALSLEESLR 244 (462)
Q Consensus 166 nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiAR-TDA~~~~gldeAI~ 244 (462)
...+.++.+.++|++|+.+== . ..+|. ++.+ .+++ .+++.. +-+ +..=| -|. ..+.+++++
T Consensus 73 ~M~~dI~~~~~~GadG~VfG~-L--~~dg~------iD~~-~~~~---Li~~a~--~~~-~tFHRAfD~--~~d~~~al~ 134 (201)
T PF03932_consen 73 IMKEDIRMLRELGADGFVFGA-L--TEDGE------IDEE-ALEE---LIEAAG--GMP-VTFHRAFDE--VPDPEEALE 134 (201)
T ss_dssp HHHHHHHHHHHTT-SEEEE---B--ETTSS------B-HH-HHHH---HHHHHT--TSE-EEE-GGGGG--SSTHHHHHH
T ss_pred HHHHHHHHHHHcCCCeeEEEe-E--CCCCC------cCHH-HHHH---HHHhcC--CCe-EEEeCcHHH--hCCHHHHHH
Confidence 455679999999999998821 1 11233 3433 3333 333332 112 23334 222 235677877
Q ss_pred HHHHhHhcCCcEEEecCC-----CCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHh-cCCCEE
Q 012478 245 RSRAFADAGADVLFIDAL-----ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEE-LGFKLV 307 (462)
Q Consensus 245 RakAy~eAGAD~Ifie~~-----~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~-lGv~~V 307 (462)
... +.|.+-|+-.+- ...+.++++++...+ -+.++.++|-++ -...+|.+ .|++-+
T Consensus 135 ~L~---~lG~~rVLTSGg~~~a~~g~~~L~~lv~~a~~---~i~Im~GgGv~~-~nv~~l~~~tg~~~~ 196 (201)
T PF03932_consen 135 QLI---ELGFDRVLTSGGAPTALEGIENLKELVEQAKG---RIEIMPGGGVRA-ENVPELVEETGVREI 196 (201)
T ss_dssp HHH---HHT-SEEEESTTSSSTTTCHHHHHHHHHHHTT---SSEEEEESS--T-TTHHHHHHHHT-SEE
T ss_pred HHH---hcCCCEEECCCCCCCHHHHHHHHHHHHHHcCC---CcEEEecCCCCH-HHHHHHHHhhCCeEE
Confidence 655 459999987653 456788888876432 245677767554 36677755 888765
No 162
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=95.24 E-value=0.67 Score=44.43 Aligned_cols=171 Identities=16% Similarity=0.150 Sum_probs=98.2
Q ss_pred ecccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCH-HHHHHHH
Q 012478 93 GPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNA-MNVKRTV 171 (462)
Q Consensus 93 ~p~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~-~nv~rtV 171 (462)
|.|.-|.-.++.+.++|. +|+=....++.++..+.++.+.+..+.|+.+= .-+.+. ....+.+
T Consensus 10 m~g~~~~~~~~~~~~~G~--------------ig~i~~~~~~~~~~~~~~~~i~~~~~~~~~v~--~i~~~~~~~~~~~~ 73 (236)
T cd04730 10 MAGVSTPELAAAVSNAGG--------------LGFIGAGYLTPEALRAEIRKIRALTDKPFGVN--LLVPSSNPDFEALL 73 (236)
T ss_pred CCCCCCHHHHHHHHhCCC--------------ccccCCCCCCHHHHHHHHHHHHHhcCCCeEEe--EecCCCCcCHHHHH
Confidence 346678888888888762 11113355678888888887765443343210 001111 1244566
Q ss_pred HHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHh
Q 012478 172 KGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFAD 251 (462)
Q Consensus 172 k~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~e 251 (462)
+.+.++|+++|+|-+.. + .+++++++ + .++.++.-.. . .++++++.+
T Consensus 74 ~~~~~~g~d~v~l~~~~--------------~-~~~~~~~~---~------~~i~~i~~v~-----~----~~~~~~~~~ 120 (236)
T cd04730 74 EVALEEGVPVVSFSFGP--------------P-AEVVERLK---A------AGIKVIPTVT-----S----VEEARKAEA 120 (236)
T ss_pred HHHHhCCCCEEEEcCCC--------------C-HHHHHHHH---H------cCCEEEEeCC-----C----HHHHHHHHH
Confidence 77888999999995431 1 23333322 1 1233332221 1 246677888
Q ss_pred cCCcEEEecCC-----------CCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcCCCEEeccchHHHHH
Q 012478 252 AGADVLFIDAL-----------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVS 317 (462)
Q Consensus 252 AGAD~Ifie~~-----------~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~ll~aa 317 (462)
+|||.|.+.+. ...+.++++.+.++ +|.++ .+|-++.-+..++.+.|..-|..+..++...
T Consensus 121 ~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~-~Pvi~----~GGI~~~~~v~~~l~~GadgV~vgS~l~~~~ 192 (236)
T cd04730 121 AGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVD-IPVIA----AGGIADGRGIAAALALGADGVQMGTRFLATE 192 (236)
T ss_pred cCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhC-CCEEE----ECCCCCHHHHHHHHHcCCcEEEEchhhhcCc
Confidence 99999987542 22456777766554 56543 2354332356777789999999988766543
No 163
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=95.14 E-value=0.097 Score=52.80 Aligned_cols=136 Identities=23% Similarity=0.258 Sum_probs=86.0
Q ss_pred HHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchh-hcccHHHHHHHHHH
Q 012478 170 TVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSR-QALSLEESLRRSRA 248 (462)
Q Consensus 170 tVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~-~~~gldeAI~RakA 248 (462)
+.+.++++|+++|-.-|...--..||.+ ...++.+||+..+++++++.. ..+ |++=..-- ...+.+++++++.+
T Consensus 27 sArl~e~aG~d~i~vGds~~~~~lG~~D-t~~vtl~em~~h~~~V~r~~~---~p~-vvaD~pfg~y~~~~~~av~~a~r 101 (264)
T PRK00311 27 FAKLFDEAGVDVILVGDSLGMVVLGYDS-TLPVTLDDMIYHTKAVARGAP---RAL-VVADMPFGSYQASPEQALRNAGR 101 (264)
T ss_pred HHHHHHHcCCCEEEECHHHHHHHcCCCC-CCCcCHHHHHHHHHHHHhcCC---CCc-EEEeCCCCCccCCHHHHHHHHHH
Confidence 4567788999999986664323367755 357899999999999887753 224 44444211 12456889999777
Q ss_pred hHh-cCCcEEEecCCCC-HHHHHHHHHhCCCCcee---------eeeeec---CCCCCC------CCHHHHHhcCCCEEe
Q 012478 249 FAD-AGADVLFIDALAS-KEEMKAFCEISPLVPKM---------ANMLEG---GGKTPI------LNPLELEELGFKLVA 308 (462)
Q Consensus 249 y~e-AGAD~Ifie~~~s-~eei~~i~~~v~~vP~~---------~N~l~~---~g~tP~------ls~~eL~~lGv~~V~ 308 (462)
..+ +||++|.+|+-.. .+.++.+++. ++|++ .|.+.+ .|++.. -....|+++|...+.
T Consensus 102 ~~~~aGa~aVkiEdg~~~~~~I~al~~a--gIpV~gHiGL~pq~~~~~gg~~i~grt~~~a~~~i~ra~a~~eAGA~~i~ 179 (264)
T PRK00311 102 LMKEAGAHAVKLEGGEEVAETIKRLVER--GIPVMGHLGLTPQSVNVLGGYKVQGRDEEAAEKLLEDAKALEEAGAFALV 179 (264)
T ss_pred HHHHhCCeEEEEcCcHHHHHHHHHHHHC--CCCEeeeecccceeecccCCeeeecCCHHHHHHHHHHHHHHHHCCCCEEE
Confidence 766 9999999998522 2345555543 35543 222210 133321 123568899999888
Q ss_pred ccch
Q 012478 309 YPLS 312 (462)
Q Consensus 309 yp~~ 312 (462)
.+..
T Consensus 180 lE~v 183 (264)
T PRK00311 180 LECV 183 (264)
T ss_pred EcCC
Confidence 8665
No 164
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=95.05 E-value=1.5 Score=39.20 Aligned_cols=171 Identities=18% Similarity=0.121 Sum_probs=89.7
Q ss_pred HHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHH-HHHHHHHHHHHhCc
Q 012478 101 SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAM-NVKRTVKGYIKAGF 179 (462)
Q Consensus 101 SArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~-nv~rtVk~l~~AGa 179 (462)
.++.+.+.|++++.+...... ..+. ..... .....+.+..++|++++.=.. +.. .....++.+.++|+
T Consensus 17 ~~~~~~~~G~~~v~~~~~~~~--~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~a~~~~~~g~ 85 (200)
T cd04722 17 LAKAAAEAGADAIIVGTRSSD--PEEA---ETDDK----EVLKEVAAETDLPLGVQLAIN--DAAAAVDIAAAAARAAGA 85 (200)
T ss_pred HHHHHHcCCCCEEEEeeEEEC--cccC---CCccc----cHHHHHHhhcCCcEEEEEccC--CchhhhhHHHHHHHHcCC
Confidence 345566778888777642211 1111 11110 335556666789998886332 222 22233678888999
Q ss_pred cEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEe
Q 012478 180 AGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFI 259 (462)
Q Consensus 180 aGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifi 259 (462)
++|+|-.. |++. .+...+.++++++.. +++.|..+...... .+++ .+.++|+|.|.+
T Consensus 86 d~v~l~~~-----~~~~-------~~~~~~~~~~i~~~~----~~~~v~~~~~~~~~--~~~~-----~~~~~g~d~i~~ 142 (200)
T cd04722 86 DGVEIHGA-----VGYL-------AREDLELIRELREAV----PDVKVVVKLSPTGE--LAAA-----AAEEAGVDEVGL 142 (200)
T ss_pred CEEEEecc-----CCcH-------HHHHHHHHHHHHHhc----CCceEEEEECCCCc--cchh-----hHHHcCCCEEEE
Confidence 99999665 2221 222333344444332 35666666544321 1111 167899999988
Q ss_pred cCCCC-----------HHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcCCCEEecc
Q 012478 260 DALAS-----------KEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYP 310 (462)
Q Consensus 260 e~~~s-----------~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp 310 (462)
..... ...++.+.+. ..+|+++ .+|-+..-+..++.+.|.+.|..+
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pi~~----~GGi~~~~~~~~~~~~Gad~v~vg 199 (200)
T cd04722 143 GNGGGGGGGRDAVPIADLLLILAKRG-SKVPVIA----GGGINDPEDAAEALALGADGVIVG 199 (200)
T ss_pred cCCcCCCCCccCchhHHHHHHHHHhc-CCCCEEE----ECCCCCHHHHHHHHHhCCCEEEec
Confidence 65311 1223333333 3355543 234332235677777898887765
No 165
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=94.96 E-value=1.1 Score=45.17 Aligned_cols=129 Identities=22% Similarity=0.234 Sum_probs=86.0
Q ss_pred CCCCHHHHHHHHHHHHHh-CccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEE-Eecchhhcc
Q 012478 160 GYGNAMNVKRTVKGYIKA-GFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIV-ARTDSRQAL 237 (462)
Q Consensus 160 GyG~~~nv~rtVk~l~~A-GaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIi-ARTDA~~~~ 237 (462)
|--++..+.++.+...++ |-.=||||=- .+.+.|.| +..+.|+|+..-.+ .+|.++ -=+|.
T Consensus 71 G~~ta~eAv~~a~lare~~~~~~iKlEVi--------~d~~~Llp--d~~~tv~aa~~L~~---~Gf~vlpyc~dd---- 133 (248)
T cd04728 71 GCRTAEEAVRTARLAREALGTDWIKLEVI--------GDDKTLLP--DPIETLKAAEILVK---EGFTVLPYCTDD---- 133 (248)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEEEe--------cCcccccc--CHHHHHHHHHHHHH---CCCEEEEEeCCC----
Confidence 333666777777666664 6788888853 22344555 34667777776655 478877 44443
Q ss_pred cHHHHHHHHHHhHhcCCcEEEec--------CCCCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcCCCEEec
Q 012478 238 SLEESLRRSRAFADAGADVLFID--------ALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAY 309 (462)
Q Consensus 238 gldeAI~RakAy~eAGAD~Ifie--------~~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~y 309 (462)
+.-|++++++|+++|.+. ++.+.+.++.+.+.. .+|+++ +++=.+| -...+..++|+.-|..
T Consensus 134 -----~~~ar~l~~~G~~~vmPlg~pIGsg~Gi~~~~~I~~I~e~~-~vpVI~---egGI~tp-eda~~AmelGAdgVlV 203 (248)
T cd04728 134 -----PVLAKRLEDAGCAAVMPLGSPIGSGQGLLNPYNLRIIIERA-DVPVIV---DAGIGTP-SDAAQAMELGADAVLL 203 (248)
T ss_pred -----HHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhC-CCcEEE---eCCCCCH-HHHHHHHHcCCCEEEE
Confidence 346999999999999762 345788889888874 367543 3322333 2456678899999999
Q ss_pred cchHHH
Q 012478 310 PLSLIG 315 (462)
Q Consensus 310 p~~ll~ 315 (462)
+....+
T Consensus 204 ~SAIt~ 209 (248)
T cd04728 204 NTAIAK 209 (248)
T ss_pred ChHhcC
Confidence 887665
No 166
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=94.95 E-value=0.56 Score=45.85 Aligned_cols=142 Identities=20% Similarity=0.158 Sum_probs=83.8
Q ss_pred CCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEE
Q 012478 150 SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVA 229 (462)
Q Consensus 150 ~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiA 229 (462)
.+-.+++.|.|+.....-..-++..++.||+.|-+==.. |+.... ..+...+-|++++++.. |..+.+|-
T Consensus 55 ~v~tVigFP~G~~~~~~K~~E~~~Av~~GAdEiDvv~n~-----g~l~~g---~~~~v~~ei~~i~~~~~--g~~lKvIl 124 (211)
T TIGR00126 55 RICTVVGFPLGASTTDVKLYETKEAIKYGADEVDMVINI-----GALKDG---NEEVVYDDIRAVVEACA--GVLLKVII 124 (211)
T ss_pred eEEEEeCCCCCCCcHHHHHHHHHHHHHcCCCEEEeecch-----HhhhCC---cHHHHHHHHHHHHHHcC--CCeEEEEE
Confidence 344678999998776544444578888999998663222 222111 12566677777777664 44566654
Q ss_pred ecchhhcccHHHHHHHHHHhHhcCCcEE-----EecCCCCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcCC
Q 012478 230 RTDSRQALSLEESLRRSRAFADAGADVL-----FIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGF 304 (462)
Q Consensus 230 RTDA~~~~gldeAI~RakAy~eAGAD~I-----fie~~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv 304 (462)
-|..+.. ++.+.-++...++|||.| |..+-.+.++++.+.+.++. +.. +...||-...-...++-++|.
T Consensus 125 E~~~L~~---~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~~-~v~--IKaaGGirt~~~a~~~i~aGa 198 (211)
T TIGR00126 125 ETGLLTD---EEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTVGD-TIG--VKASGGVRTAEDAIAMIEAGA 198 (211)
T ss_pred ecCCCCH---HHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhcc-CCe--EEEeCCCCCHHHHHHHHHHhh
Confidence 4443321 555666788899999999 54445677787777776653 222 222223211123345556666
Q ss_pred CEE
Q 012478 305 KLV 307 (462)
Q Consensus 305 ~~V 307 (462)
.|+
T Consensus 199 ~ri 201 (211)
T TIGR00126 199 SRI 201 (211)
T ss_pred HHh
Confidence 554
No 167
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=94.91 E-value=2.2 Score=43.38 Aligned_cols=134 Identities=15% Similarity=0.064 Sum_probs=82.7
Q ss_pred HHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhh---cCCcEE------EeCCC-CCCCHHHHHHHH
Q 012478 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQA---VSIPVI------GDGDN-GYGNAMNVKRTV 171 (462)
Q Consensus 102 Arl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra---~~iPVI------aD~Dt-GyG~~~nv~rtV 171 (462)
-..+-++|.+.+-+.- .+|-. + ....-..+.+|.++.++.+.+. .++.+. ...++ |.-++..+.+.+
T Consensus 85 ie~A~~~g~~~v~i~~-~~s~~-~-~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~ 161 (287)
T PRK05692 85 LEAALAAGADEVAVFA-SASEA-F-SQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVA 161 (287)
T ss_pred HHHHHHcCCCEEEEEE-ecCHH-H-HHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHHH
Confidence 3556678999776662 11111 1 1111236788877766655443 345553 23333 344678899999
Q ss_pred HHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHh
Q 012478 172 KGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFAD 251 (462)
Q Consensus 172 k~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~e 251 (462)
+.+.++|+..|.|-|.+ |. ..+.++.+.++++++... +.++-+-...|- --++.-+.+..+
T Consensus 162 ~~~~~~G~d~i~l~DT~-----G~------~~P~~v~~lv~~l~~~~~--~~~i~~H~Hn~~------Gla~AN~laA~~ 222 (287)
T PRK05692 162 ERLFALGCYEISLGDTI-----GV------GTPGQVRAVLEAVLAEFP--AERLAGHFHDTY------GQALANIYASLE 222 (287)
T ss_pred HHHHHcCCcEEEecccc-----Cc------cCHHHHHHHHHHHHHhCC--CCeEEEEecCCC------CcHHHHHHHHHH
Confidence 99999999999999986 33 345667777777765532 123444444432 235667788889
Q ss_pred cCCcEE
Q 012478 252 AGADVL 257 (462)
Q Consensus 252 AGAD~I 257 (462)
||||.|
T Consensus 223 aG~~~i 228 (287)
T PRK05692 223 EGITVF 228 (287)
T ss_pred hCCCEE
Confidence 999975
No 168
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=94.90 E-value=0.53 Score=45.81 Aligned_cols=145 Identities=18% Similarity=0.175 Sum_probs=83.8
Q ss_pred HHHHhCCcEEEec-cHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHH-----HHHHHHHHHh
Q 012478 104 LVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNV-----KRTVKGYIKA 177 (462)
Q Consensus 104 l~e~aGfdaI~vS-G~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv-----~rtVk~l~~A 177 (462)
.+.+.||++|++. ++.-.+ ..-+... ...++++++.|.|......- ...++..++.
T Consensus 27 ~a~~~~~~av~v~p~~~~~~-~~~~~~~-----------------~~~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~~ 88 (236)
T PF01791_consen 27 EAIEYGFDAVCVTPGYVKPA-AELLAGS-----------------GVKVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIRL 88 (236)
T ss_dssp HHHHHTSSEEEEEGGGHHHH-HHHSTTS-----------------TSEEEEEESTTTSSSTHHHHTCEEEHHHHHHHHHT
T ss_pred HHHHhCCCEEEECHHHHHHH-HHHhhcc-----------------ccccceEEEeCCCCCccccccccchHHHHHHHHHc
Confidence 3445699999998 444321 1112111 12588999999997766555 6778999999
Q ss_pred CccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhc-----ccHHHHHHHHHHhHhc
Q 012478 178 GFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQA-----LSLEESLRRSRAFADA 252 (462)
Q Consensus 178 GaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~-----~gldeAI~RakAy~eA 252 (462)
||++|.+==.. |+.... ..+++.+.|+++++..+.. ++.++--...... ...+....=++...++
T Consensus 89 GAd~vd~vi~~-----~~~~~~---~~~~~~~~i~~v~~~~~~~--gl~vIlE~~l~~~~~~~~~~~~~I~~a~ria~e~ 158 (236)
T PF01791_consen 89 GADEVDVVINY-----GALGSG---NEDEVIEEIAAVVEECHKY--GLKVILEPYLRGEEVADEKKPDLIARAARIAAEL 158 (236)
T ss_dssp T-SEEEEEEEH-----HHHHTT---HHHHHHHHHHHHHHHHHTS--EEEEEEEECECHHHBSSTTHHHHHHHHHHHHHHT
T ss_pred CCceeeeeccc-----cccccc---cHHHHHHHHHHHHHHHhcC--CcEEEEEEecCchhhcccccHHHHHHHHHHHHHh
Confidence 99999773221 111100 1356778888888887754 3433333221111 1122344456777899
Q ss_pred CCcEEEecCC-------CCHHHHHHHHHhCC
Q 012478 253 GADVLFIDAL-------ASKEEMKAFCEISP 276 (462)
Q Consensus 253 GAD~Ifie~~-------~s~eei~~i~~~v~ 276 (462)
|||.|=..-. .+.+.++++++..+
T Consensus 159 GaD~vKt~tg~~~~~t~~~~~~~~~~~~~~~ 189 (236)
T PF01791_consen 159 GADFVKTSTGKPVGATPEDVELMRKAVEAAP 189 (236)
T ss_dssp T-SEEEEE-SSSSCSHHHHHHHHHHHHHTHS
T ss_pred CCCEEEecCCccccccHHHHHHHHHHHHhcC
Confidence 9999988665 34556666666544
No 169
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=94.90 E-value=0.75 Score=48.41 Aligned_cols=150 Identities=23% Similarity=0.290 Sum_probs=85.9
Q ss_pred HHHHHHHHhCccEEEeCCCC------------CCCCCCCCCCCcccCHHHH-HHHHHHHHHHHHhhCCCeEEEEecchh-
Q 012478 169 RTVKGYIKAGFAGIILEDQV------------SPKGCGHTRGRKVVSREEA-VMRIKAAVDARKESGSDIVIVARTDSR- 234 (462)
Q Consensus 169 rtVk~l~~AGaaGI~IEDq~------------~PKrCGH~~gk~Lvp~ee~-~~kI~AA~~Ar~~~g~d~vIiARTDA~- 234 (462)
+++++..+||.+||.|--.- ..||.-.-+| .+...-.+ .+-|++++++ .|++|.|-.|....
T Consensus 154 ~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGG-slenR~rf~~eii~~vr~~---~g~~f~v~vri~~~~ 229 (382)
T cd02931 154 ESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGG-SLENRLRFAIEIVEEIKAR---CGEDFPVSLRYSVKS 229 (382)
T ss_pred HHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCC-CHHHHhHHHHHHHHHHHHh---cCCCceEEEEEechh
Confidence 44566668999999886521 2355544444 23222222 2223333322 36788888885421
Q ss_pred -----------------hcccHHHHHHHHHHhHhcCCcEEEecCCC---------C--------HHHHHHHHHhCCCCce
Q 012478 235 -----------------QALSLEESLRRSRAFADAGADVLFIDALA---------S--------KEEMKAFCEISPLVPK 280 (462)
Q Consensus 235 -----------------~~~gldeAI~RakAy~eAGAD~Ifie~~~---------s--------~eei~~i~~~v~~vP~ 280 (462)
....++|+++-++.+.++|+|.|=+.+-. . .+.++.+.+.+. +|+
T Consensus 230 ~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~-~pv 308 (382)
T cd02931 230 YIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVVD-VPV 308 (382)
T ss_pred hccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCcccccccCCccCCcchhHHHHHHHHHHCC-CCE
Confidence 12357999999999999999999775311 0 134455556664 676
Q ss_pred eeeeeecCCC-CCCCCHHH-HHhcCCCEEeccchHHHHHHHHHHHHHHHHHcCCC
Q 012478 281 MANMLEGGGK-TPILNPLE-LEELGFKLVAYPLSLIGVSVRAMQDALTAIKGGRI 333 (462)
Q Consensus 281 ~~N~l~~~g~-tP~ls~~e-L~~lGv~~V~yp~~ll~aa~~Am~~~l~~l~~g~~ 333 (462)
++| |+- +|. ..++ |++-++.+|.++-.++. =-+..+.+++|+.
T Consensus 309 i~~----G~i~~~~-~~~~~l~~g~~D~V~~gR~~la-----dP~l~~k~~~g~~ 353 (382)
T cd02931 309 IMA----GRMEDPE-LASEAINEGIADMISLGRPLLA-----DPDVVNKIRRGRF 353 (382)
T ss_pred EEe----CCCCCHH-HHHHHHHcCCCCeeeechHhHh-----CccHHHHHHcCCc
Confidence 644 222 221 2333 44445899888765543 2355666777753
No 170
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=94.87 E-value=2.8 Score=46.97 Aligned_cols=250 Identities=19% Similarity=0.189 Sum_probs=135.8
Q ss_pred HHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhc-CCcEE--EeCC--CCCCC-HHHH-HHHHHH
Q 012478 101 SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV-SIPVI--GDGD--NGYGN-AMNV-KRTVKG 173 (462)
Q Consensus 101 SArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~-~iPVI--aD~D--tGyG~-~~nv-~rtVk~ 173 (462)
-|..+.++||+.|=+.|.+.- --++|-.+.-+++ ..+.+++.. +.|+. .-+- -||.. +.++ ..-++.
T Consensus 32 ia~~ld~~G~~siE~~GGatf--~~~~~~~~e~p~e----~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~v~~ 105 (593)
T PRK14040 32 IAAKLDKVGYWSLESWGGATF--DACIRFLGEDPWE----RLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVERFVER 105 (593)
T ss_pred HHHHHHHcCCCEEEecCCcch--hhhccccCCCHHH----HHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHHHHHH
Confidence 457788899999988643221 1245554443333 334444332 45543 3322 36665 5554 455888
Q ss_pred HHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCe-EEEEecchhhcccHHHHHHHHHHhHhc
Q 012478 174 YIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDI-VIVARTDSRQALSLEESLRRSRAFADA 252 (462)
Q Consensus 174 l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~-vIiARTDA~~~~gldeAI~RakAy~eA 252 (462)
..+.|++.++|-|.. . +. ..++.+++..++.|... ..+.=|+. ..+.++.-++-++.+.++
T Consensus 106 a~~~Gid~~rifd~l-----n--------d~----~~~~~ai~~ak~~G~~~~~~i~yt~~-p~~~~~~~~~~a~~l~~~ 167 (593)
T PRK14040 106 AVKNGMDVFRVFDAM-----N--------DP----RNLETALKAVRKVGAHAQGTLSYTTS-PVHTLQTWVDLAKQLEDM 167 (593)
T ss_pred HHhcCCCEEEEeeeC-----C--------cH----HHHHHHHHHHHHcCCeEEEEEEEeeC-CccCHHHHHHHHHHHHHc
Confidence 899999999999853 1 12 34444444444434221 11233332 234577788889999999
Q ss_pred CCcEEEec---CCCCHHHHHHHHHhCCC-CceeeeeeecCCCCCCCC---HHHHHhcCCCEEeccchHH--HHHHHHHHH
Q 012478 253 GADVLFID---ALASKEEMKAFCEISPL-VPKMANMLEGGGKTPILN---PLELEELGFKLVAYPLSLI--GVSVRAMQD 323 (462)
Q Consensus 253 GAD~Ifie---~~~s~eei~~i~~~v~~-vP~~~N~l~~~g~tP~ls---~~eL~~lGv~~V~yp~~ll--~aa~~Am~~ 323 (462)
|||.|.+- |+-.++++.++++.+.. +.+++.+ +.+ .+..+. .-.--++|++.|-.....+ ++...+++.
T Consensus 168 Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~~~~pi~~-H~H-nt~GlA~An~laAieAGa~~vD~ai~glG~~~Gn~~le~ 245 (593)
T PRK14040 168 GVDSLCIKDMAGLLKPYAAYELVSRIKKRVDVPLHL-HCH-ATTGLSTATLLKAIEAGIDGVDTAISSMSMTYGHSATET 245 (593)
T ss_pred CCCEEEECCCCCCcCHHHHHHHHHHHHHhcCCeEEE-EEC-CCCchHHHHHHHHHHcCCCEEEeccccccccccchhHHH
Confidence 99999884 45567777777765421 1233332 221 233333 2344578998886655544 456666677
Q ss_pred HHHHHHcCCCCCCCCCCCHHHHHHhcCcccHHHHHHhhcccccccccccccCCCCCCCCC
Q 012478 324 ALTAIKGGRIPSPGSMPSFQEIKETLGFNTYYEEEKRYATSMRRLSSENVTSNSYDTQPM 383 (462)
Q Consensus 324 ~l~~l~~g~~~~~~~~~s~~e~~~lvg~~~~~~~e~~y~~~~~~~~~~~~~~~~~~~~~~ 383 (462)
.+..|+..+... ...++.+.++-.+ |.++-+.|..-+..+ ......+|.+|-.
T Consensus 246 vv~~L~~~~~~~---gidl~~l~~is~~--~~~v~~~Y~~~~~~~--~~~~~~v~~~e~P 298 (593)
T PRK14040 246 LVATLEGTERDT---GLDILKLEEIAAY--FREVRKKYAKFEGQL--KGVDSRILVAQVP 298 (593)
T ss_pred HHHHHHhcCCCc---CCCHHHHHHHHHH--HHHHHHHhccCCccc--ccCcccEEEEcCC
Confidence 777676432221 1334444333322 445666776644332 2334455555543
No 171
>PLN02858 fructose-bisphosphate aldolase
Probab=94.84 E-value=3.3 Score=50.67 Aligned_cols=212 Identities=15% Similarity=0.137 Sum_probs=130.6
Q ss_pred HHHHHhCCCceEecccCChHHHHH----HHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEe
Q 012478 81 LRQILELPGVHQGPACFDALSAKL----VEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGD 156 (462)
Q Consensus 81 LR~ll~~~~~iv~p~ayDalSArl----~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD 156 (462)
|....+++--+-+.||||.-+++. +|+.+.++|..-+-... ...| ++ +...++..++..++||.+=
T Consensus 1106 l~~A~~~~yav~afn~~n~e~~~avi~aAe~~~sPvIl~~~~~~~-~~~~--------~~-~~~~~~~~a~~~~vpV~lH 1175 (1378)
T PLN02858 1106 LLNAEKGGYAVGAFNVYNLEGIEAVVAAAEAEKSPAILQVHPGAL-KQGG--------IP-LVSCCIAAAEQASVPITVH 1175 (1378)
T ss_pred HHHHHHCCcEEEEEEeCCHHHHHHHHHHHHHhCCCEEEECCccHH-hhcC--------HH-HHHHHHHHHHHCCCCEEEE
Confidence 333333444578899999999865 46678999887653321 1122 33 5556667777789999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCC----CeEEE-Eec
Q 012478 157 GDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGS----DIVIV-ART 231 (462)
Q Consensus 157 ~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~----d~vIi-ART 231 (462)
.|+|. +. +.+++.+++|...|.| |.. | .|.||=+++-+.+++-++..|. ++=-+ +-.
T Consensus 1176 LDHg~-~~----~~i~~ai~~Gf~SVM~-DgS------~------l~~eeNi~~t~~vv~~Ah~~gv~VEaElG~v~g~e 1237 (1378)
T PLN02858 1176 FDHGT-SK----HELLEALELGFDSVMV-DGS------H------LSFTENISYTKSISSLAHSKGLMVEAELGRLSGTE 1237 (1378)
T ss_pred CCCCC-CH----HHHHHHHHhCCCEEEE-eCC------C------CCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCcc
Confidence 99985 33 3456667799999999 542 3 3678877777777777664321 11111 111
Q ss_pred chhhcccHH---HHHHHHHHhHh-cCCcEEEe-----cCC-------CCHHHHHHHHHhCC--CCceeeeeeecCCCCCC
Q 012478 232 DSRQALSLE---ESLRRSRAFAD-AGADVLFI-----DAL-------ASKEEMKAFCEISP--LVPKMANMLEGGGKTPI 293 (462)
Q Consensus 232 DA~~~~gld---eAI~RakAy~e-AGAD~Ifi-----e~~-------~s~eei~~i~~~v~--~vP~~~N~l~~~g~tP~ 293 (462)
|.......+ --.+.|+.|.+ -|+|++-+ |+. -+.+.+++|.+.++ .+|+ +++|+..+|.
T Consensus 1238 ~~~~~~~~~~~~T~p~~a~~Fv~~TgvD~LAvaiGt~HG~Y~~~~p~l~~~~l~~i~~~~~~~~vpL---VlHGgSG~~~ 1314 (1378)
T PLN02858 1238 DGLTVEEYEAKLTDVDQAKEFIDETGIDALAVCIGNVHGKYPASGPNLRLDLLKELRALSSKKGVLL---VLHGASGLPE 1314 (1378)
T ss_pred CCccccccccCCCCHHHHHHHHHhcCCcEEeeecccccccCCCCCCccCHHHHHHHHHHhcCCCCcE---EEeCCCCCCH
Confidence 210000000 01345677774 69998754 332 13567888888873 3564 3555333332
Q ss_pred CCHHHHHhcCCCEEeccchHHHHHHHHHHH
Q 012478 294 LNPLELEELGFKLVAYPLSLIGVSVRAMQD 323 (462)
Q Consensus 294 ls~~eL~~lGv~~V~yp~~ll~aa~~Am~~ 323 (462)
-...+.-+.|++-|-+...+..+.+.++++
T Consensus 1315 ~~~~~ai~~Gi~KiNi~T~~~~a~~~~~~~ 1344 (1378)
T PLN02858 1315 SLIKECIENGVRKFNVNTEVRTAYMEALSS 1344 (1378)
T ss_pred HHHHHHHHcCCeEEEeCHHHHHHHHHHHhC
Confidence 233444578999999999999888887763
No 172
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=94.81 E-value=1.8 Score=44.32 Aligned_cols=183 Identities=14% Similarity=0.121 Sum_probs=106.6
Q ss_pred HHHHHHhCCCceE---ecccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEe
Q 012478 80 SLRQILELPGVHQ---GPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGD 156 (462)
Q Consensus 80 ~LR~ll~~~~~iv---~p~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD 156 (462)
+|.+++.=.-|++ |.++-|+--|..+.++|. +++ +| .+..+.+++-+..+.+...++.|+=++
T Consensus 3 ~l~~~lgi~~Pii~apM~~~s~~~la~avs~aGg-------lG~----l~---~~~~~~~~l~~~i~~~~~~t~~pfgvn 68 (307)
T TIGR03151 3 RLCDLLGIEYPIFQGGMAWVATGSLAAAVSNAGG-------LGI----IG---AGNAPPDVVRKEIRKVKELTDKPFGVN 68 (307)
T ss_pred hhhHHhCCCCCEEcCCCCCCCCHHHHHHHHhCCC-------cce----ec---cccCCHHHHHHHHHHHHHhcCCCcEEe
Confidence 4566665444543 345666555555555652 221 11 123567888777787776666665443
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhc
Q 012478 157 GDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQA 236 (462)
Q Consensus 157 ~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~ 236 (462)
.-.- .+ ...+.++.+.+.|+..|-+- . |+ | +++++++++. +..|++-...
T Consensus 69 ~~~~--~~-~~~~~~~~~~~~~v~~v~~~-~------g~-------p-~~~i~~lk~~---------g~~v~~~v~s--- 118 (307)
T TIGR03151 69 IMLL--SP-FVDELVDLVIEEKVPVVTTG-A------GN-------P-GKYIPRLKEN---------GVKVIPVVAS--- 118 (307)
T ss_pred eecC--CC-CHHHHHHHHHhCCCCEEEEc-C------CC-------c-HHHHHHHHHc---------CCEEEEEcCC---
Confidence 3211 11 23455666778899988761 1 21 2 3466665432 3555553322
Q ss_pred ccHHHHHHHHHHhHhcCCcEEEecCC---------CCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcCCCEE
Q 012478 237 LSLEESLRRSRAFADAGADVLFIDAL---------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLV 307 (462)
Q Consensus 237 ~gldeAI~RakAy~eAGAD~Ifie~~---------~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V 307 (462)
++-++..+++|||.|.+++. .+.+.+.++.+.++ +|++++ ||-...-+..+..++|..-|
T Consensus 119 ------~~~a~~a~~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~-iPviaa----GGI~~~~~~~~al~~GA~gV 187 (307)
T TIGR03151 119 ------VALAKRMEKAGADAVIAEGMESGGHIGELTTMALVPQVVDAVS-IPVIAA----GGIADGRGMAAAFALGAEAV 187 (307)
T ss_pred ------HHHHHHHHHcCCCEEEEECcccCCCCCCCcHHHHHHHHHHHhC-CCEEEE----CCCCCHHHHHHHHHcCCCEe
Confidence 23467788999999999653 24677888888775 676543 34221123556667999999
Q ss_pred eccchHHHHH
Q 012478 308 AYPLSLIGVS 317 (462)
Q Consensus 308 ~yp~~ll~aa 317 (462)
.++..++...
T Consensus 188 ~iGt~f~~t~ 197 (307)
T TIGR03151 188 QMGTRFLCAK 197 (307)
T ss_pred ecchHHhccc
Confidence 9998766543
No 173
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=94.80 E-value=0.39 Score=47.63 Aligned_cols=101 Identities=14% Similarity=0.244 Sum_probs=64.1
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHH
Q 012478 134 SYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKA 213 (462)
Q Consensus 134 sl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~A 213 (462)
..+.+.+.++.+. ..++||.+=+--|+. ..+....++.++++|+++|+|. +-.| |++-. ..+.|+.
T Consensus 119 dp~~l~~iv~av~-~~~~PVsvKiR~~~~-~~~~~~~a~~l~~aGad~i~Vd-~~~~-------g~~~a----~~~~I~~ 184 (231)
T TIGR00736 119 NKELLKEFLTKMK-ELNKPIFVKIRGNCI-PLDELIDALNLVDDGFDGIHVD-AMYP-------GKPYA----DMDLLKI 184 (231)
T ss_pred CHHHHHHHHHHHH-cCCCcEEEEeCCCCC-cchHHHHHHHHHHcCCCEEEEe-eCCC-------CCchh----hHHHHHH
Confidence 3344555555555 348999999998864 3456678889999999999994 4321 11111 1234444
Q ss_pred HHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEe
Q 012478 214 AVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFI 259 (462)
Q Consensus 214 A~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifi 259 (462)
++++. .++.|+|--|-.. .+.+..+.++|||+|.+
T Consensus 185 i~~~~----~~ipIIgNGgI~s-------~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 185 LSEEF----NDKIIIGNNSIDD-------IESAKEMLKAGADFVSV 219 (231)
T ss_pred HHHhc----CCCcEEEECCcCC-------HHHHHHHHHhCCCeEEE
Confidence 44432 2477888776543 33566666789999987
No 174
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=94.73 E-value=1.9 Score=48.09 Aligned_cols=252 Identities=18% Similarity=0.160 Sum_probs=134.1
Q ss_pred HHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEE--EeCCC--CCCC-HHHHH-HHHHH
Q 012478 100 LSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVI--GDGDN--GYGN-AMNVK-RTVKG 173 (462)
Q Consensus 100 lSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVI--aD~Dt--GyG~-~~nv~-rtVk~ 173 (462)
--|..+.++||+.|=++|.+.-.+ .++-...= -.|.+..++... .+.++. +-+.+ ||-+ +.++. .-+++
T Consensus 25 ~ia~~L~~~Gv~~IE~~GGatfd~--~~~f~~e~-~~e~l~~l~~~~--~~~~l~~L~Rg~N~~G~~~ypddvv~~~v~~ 99 (582)
T TIGR01108 25 PIAEKLDDVGYWSLEVWGGATFDA--CIRFLNED-PWERLRELKKAL--PNTPLQMLLRGQNLLGYRHYADDVVERFVKK 99 (582)
T ss_pred HHHHHHHHcCCCEEEecCCccccc--ccccCCCC-HHHHHHHHHHhC--CCCEEEEEEccccccccccCchhhHHHHHHH
Confidence 345677889999998874222111 11111111 233443333322 234544 34555 6654 55544 45888
Q ss_pred HHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEE-EEecchhhcccHHHHHHHHHHhHhc
Q 012478 174 YIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVI-VARTDSRQALSLEESLRRSRAFADA 252 (462)
Q Consensus 174 l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vI-iARTDA~~~~gldeAI~RakAy~eA 252 (462)
..++|++-++|-|... +. ..++.+++..++.|..+.+ +.-|++- .+.++..++-++++.++
T Consensus 100 a~~~Gvd~irif~~ln-------------d~----~n~~~~i~~ak~~G~~v~~~i~~t~~p-~~~~~~~~~~~~~~~~~ 161 (582)
T TIGR01108 100 AVENGMDVFRIFDALN-------------DP----RNLQAAIQAAKKHGAHAQGTISYTTSP-VHTLETYLDLAEELLEM 161 (582)
T ss_pred HHHCCCCEEEEEEecC-------------cH----HHHHHHHHHHHHcCCEEEEEEEeccCC-CCCHHHHHHHHHHHHHc
Confidence 8999999999988642 11 2344444444443422211 1233321 25678889999999999
Q ss_pred CCcEEEec---CCCCHHHHHHHHHhCCC-CceeeeeeecCCCCCCCC---HHHHHhcCCCEEeccchHH--HHHHHHHHH
Q 012478 253 GADVLFID---ALASKEEMKAFCEISPL-VPKMANMLEGGGKTPILN---PLELEELGFKLVAYPLSLI--GVSVRAMQD 323 (462)
Q Consensus 253 GAD~Ifie---~~~s~eei~~i~~~v~~-vP~~~N~l~~~g~tP~ls---~~eL~~lGv~~V~yp~~ll--~aa~~Am~~ 323 (462)
|||.|.+- |+-+++++.++.+.+.. +|+++.+ +.+ .+..+. .-.--+.|++.|--....+ ++..-++++
T Consensus 162 Gad~I~i~Dt~G~~~P~~v~~lv~~lk~~~~~pi~~-H~H-nt~Gla~An~laAveaGa~~vd~ai~GlG~~tGn~~le~ 239 (582)
T TIGR01108 162 GVDSICIKDMAGILTPKAAYELVSALKKRFGLPVHL-HSH-ATTGMAEMALLKAIEAGADGIDTAISSMSGGTSHPPTET 239 (582)
T ss_pred CCCEEEECCCCCCcCHHHHHHHHHHHHHhCCCceEE-Eec-CCCCcHHHHHHHHHHhCCCEEEeccccccccccChhHHH
Confidence 99999884 45566777766654321 2333332 221 233343 2344577998876655544 455566666
Q ss_pred HHHHHHcCCCCCCCCCCCHHHHHHhcCcccHHHHHHhhcccccccccccccCCCCCCCCC
Q 012478 324 ALTAIKGGRIPSPGSMPSFQEIKETLGFNTYYEEEKRYATSMRRLSSENVTSNSYDTQPM 383 (462)
Q Consensus 324 ~l~~l~~g~~~~~~~~~s~~e~~~lvg~~~~~~~e~~y~~~~~~~~~~~~~~~~~~~~~~ 383 (462)
.+..|+..+.. ..+.++.+.++- +.+.+..+.|..-+... ......+|.+|-.
T Consensus 240 vv~~L~~~g~~---tgid~~~L~~l~--~~~~~v~~~Y~~~~~~~--~~~~~~v~~~e~p 292 (582)
T TIGR01108 240 MVAALRGTGYD---TGLDIELLLEIA--AYFREVRKKYSQFEGQL--KGPDSRILVAQVP 292 (582)
T ss_pred HHHHHHhcCCC---cccCHHHHHHHH--HHHHHHHHHhhcCCCcc--cCCCccEEEEcCC
Confidence 66666642222 123455555552 22555556675543322 2334455555543
No 175
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=94.73 E-value=1.1 Score=46.15 Aligned_cols=86 Identities=12% Similarity=0.067 Sum_probs=55.5
Q ss_pred HHHHHHHHhCCcEEEecc---HHHHhh----hccCCCCCCCCHH----HHHHHHHHHHhhc--CCcEEEeCC------CC
Q 012478 100 LSAKLVEKSGFSFCFTSG---FSISAA----RLALPDTGFISYG----EMVDQGQLITQAV--SIPVIGDGD------NG 160 (462)
Q Consensus 100 lSArl~e~aGfdaI~vSG---~avSas----~lG~PD~g~vsl~----Eml~~~~~I~ra~--~iPVIaD~D------tG 160 (462)
-.|+.+.++|||+|-+-+ +-+.-. ..-.-|.---+++ .+++.++.|.+++ +.||.+|+- .|
T Consensus 158 ~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g 237 (336)
T cd02932 158 AAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGG 237 (336)
T ss_pred HHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCCCC
Confidence 567888899999998863 222110 0111221112333 3456677777777 689999854 44
Q ss_pred CCCHHHHHHHHHHHHHhCccEEEeCC
Q 012478 161 YGNAMNVKRTVKGYIKAGFAGIILED 186 (462)
Q Consensus 161 yG~~~nv~rtVk~l~~AGaaGI~IED 186 (462)
+ +...+.+.++.++++|++-|++-.
T Consensus 238 ~-~~~e~~~ia~~Le~~gvd~iev~~ 262 (336)
T cd02932 238 W-DLEDSVELAKALKELGVDLIDVSS 262 (336)
T ss_pred C-CHHHHHHHHHHHHHcCCCEEEECC
Confidence 4 456778889999999999998743
No 176
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=94.61 E-value=1 Score=43.21 Aligned_cols=144 Identities=19% Similarity=0.166 Sum_probs=79.2
Q ss_pred HHHHHHhhcCCcEEE----eCCCC---CCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHH
Q 012478 141 QGQLITQAVSIPVIG----DGDNG---YGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKA 213 (462)
Q Consensus 141 ~~~~I~ra~~iPVIa----D~DtG---yG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~A 213 (462)
..+.|.+.+++|+++ |.|.. .|. -.+.++.+.++||+.|.+--.. ..... -...+++++ +
T Consensus 51 ~~~~i~~~~~iPil~~~~~~~~~~~~~ig~---~~~~~~~a~~aGad~I~~~~~~-----~~~p~--~~~~~~~i~---~ 117 (219)
T cd04729 51 DIRAIRARVDLPIIGLIKRDYPDSEVYITP---TIEEVDALAAAGADIIALDATD-----RPRPD--GETLAELIK---R 117 (219)
T ss_pred HHHHHHHhCCCCEEEEEecCCCCCCceeCC---CHHHHHHHHHcCCCEEEEeCCC-----CCCCC--CcCHHHHHH---H
Confidence 344555557899985 55431 121 1346688889999988873221 00000 012233333 3
Q ss_pred HHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEec--C---------CCCHHHHHHHHHhCCCCceee
Q 012478 214 AVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFID--A---------LASKEEMKAFCEISPLVPKMA 282 (462)
Q Consensus 214 A~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie--~---------~~s~eei~~i~~~v~~vP~~~ 282 (462)
+++. + ++.++.-.. ..+ ++.+..++|+|.|.+. + ..+.+.++++.+.+. +|+++
T Consensus 118 ~~~~----g-~~~iiv~v~-----t~~----ea~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~-ipvia 182 (219)
T cd04729 118 IHEE----Y-NCLLMADIS-----TLE----EALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKALG-IPVIA 182 (219)
T ss_pred HHHH----h-CCeEEEECC-----CHH----HHHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhcC-CCEEE
Confidence 3332 3 344443221 223 4577788999998653 1 133467777777663 56553
Q ss_pred eeeecCCCCCCCCHHHHHhcCCCEEeccchHHHH
Q 012478 283 NMLEGGGKTPILNPLELEELGFKLVAYPLSLIGV 316 (462)
Q Consensus 283 N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~ll~a 316 (462)
.+|-.-.-+.+++.++|+..|..+..+++.
T Consensus 183 ----~GGI~~~~~~~~~l~~GadgV~vGsal~~~ 212 (219)
T cd04729 183 ----EGRINSPEQAAKALELGADAVVVGSAITRP 212 (219)
T ss_pred ----eCCCCCHHHHHHHHHCCCCEEEEchHHhCh
Confidence 234321125577778999999999876654
No 177
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=94.61 E-value=0.45 Score=46.14 Aligned_cols=159 Identities=25% Similarity=0.288 Sum_probs=95.2
Q ss_pred HHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCH----HHHHHHHHHHHH
Q 012478 101 SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNA----MNVKRTVKGYIK 176 (462)
Q Consensus 101 SArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~----~nv~rtVk~l~~ 176 (462)
.|+.++..|..+|=+.| +++++.|...+++|||.=.-..|.+. .-..+-++.+.+
T Consensus 4 mA~Aa~~gGA~giR~~~---------------------~~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~ 62 (192)
T PF04131_consen 4 MAKAAEEGGAVGIRANG---------------------VEDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVDALAE 62 (192)
T ss_dssp HHHHHHHCT-SEEEEES---------------------HHHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHHHHHH
T ss_pred HHHHHHHCCceEEEcCC---------------------HHHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHHHHHH
Confidence 45566666666655443 24678888999999997655555431 235677889999
Q ss_pred hCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcE
Q 012478 177 AGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADV 256 (462)
Q Consensus 177 AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~ 256 (462)
+|++-|-| |-+. ..++ .+.++++.+|+.. + .+++|=+.. ++.++...++|+|+
T Consensus 63 aGadIIAl-DaT~-------R~Rp-~~l~~li~~i~~~-------~--~l~MADist---------~ee~~~A~~~G~D~ 115 (192)
T PF04131_consen 63 AGADIIAL-DATD-------RPRP-ETLEELIREIKEK-------Y--QLVMADIST---------LEEAINAAELGFDI 115 (192)
T ss_dssp CT-SEEEE-E-SS-------SS-S-S-HHHHHHHHHHC-------T--SEEEEE-SS---------HHHHHHHHHTT-SE
T ss_pred cCCCEEEE-ecCC-------CCCC-cCHHHHHHHHHHh-------C--cEEeeecCC---------HHHHHHHHHcCCCE
Confidence 99999999 5432 1234 6778888887532 2 788887654 44677888999999
Q ss_pred EEec------C----CCCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCH---HHHHhcCCCEEeccchHHHH
Q 012478 257 LFID------A----LASKEEMKAFCEISPLVPKMANMLEGGGKTPILNP---LELEELGFKLVAYPLSLIGV 316 (462)
Q Consensus 257 Ifie------~----~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~---~eL~~lGv~~V~yp~~ll~a 316 (462)
|=-- . .++.+.++++++. .+|+ +.|| +. .++ .+..++|..-|..|...-+.
T Consensus 116 I~TTLsGYT~~t~~~~pD~~lv~~l~~~--~~pv---IaEG--ri--~tpe~a~~al~~GA~aVVVGsAITrP 179 (192)
T PF04131_consen 116 IGTTLSGYTPYTKGDGPDFELVRELVQA--DVPV---IAEG--RI--HTPEQAAKALELGAHAVVVGSAITRP 179 (192)
T ss_dssp EE-TTTTSSTTSTTSSHHHHHHHHHHHT--TSEE---EEES--S----SHHHHHHHHHTT-SEEEE-HHHH-H
T ss_pred EEcccccCCCCCCCCCCCHHHHHHHHhC--CCcE---eecC--CC--CCHHHHHHHHhcCCeEEEECcccCCH
Confidence 8632 1 1456788888875 3553 3454 32 354 55678899999999876654
No 178
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=94.59 E-value=2.5 Score=42.65 Aligned_cols=176 Identities=16% Similarity=0.232 Sum_probs=104.5
Q ss_pred HHHHHHhCCcEEEec-cHHHHhhhccCCCC------------CCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHH---
Q 012478 102 AKLVEKSGFSFCFTS-GFSISAARLALPDT------------GFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAM--- 165 (462)
Q Consensus 102 Arl~e~aGfdaI~vS-G~avSas~lG~PD~------------g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~--- 165 (462)
++.+++.|+|.|=++ -+. -.+.|. .-+++++.++.++.+.+..++|++ =.+|.|+.
T Consensus 35 ~~~l~~~Gad~iElGiPfS-----DP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~v---lm~Y~N~i~~~ 106 (263)
T CHL00200 35 LKILDKKGADIIELGIPYS-----DPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIV---IFTYYNPVLHY 106 (263)
T ss_pred HHHHHHCCCCEEEECCCCC-----CCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEE---EEecccHHHHh
Confidence 455677899998776 211 112221 246788899999999877789976 35788873
Q ss_pred HHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHH
Q 012478 166 NVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRR 245 (462)
Q Consensus 166 nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~R 245 (462)
.+.+-++.+.++|++||.|=|- |.||..+-+.++++. |-+++...--... .+|
T Consensus 107 G~e~F~~~~~~aGvdgviipDL---------------P~ee~~~~~~~~~~~----gi~~I~lv~PtT~--------~er 159 (263)
T CHL00200 107 GINKFIKKISQAGVKGLIIPDL---------------PYEESDYLISVCNLY----NIELILLIAPTSS--------KSR 159 (263)
T ss_pred CHHHHHHHHHHcCCeEEEecCC---------------CHHHHHHHHHHHHHc----CCCEEEEECCCCC--------HHH
Confidence 3566789999999999999774 345544444444333 4444333322111 236
Q ss_pred HHHhHhcCCcEEEe---cCCC-----CHHHHHHHHHh---CCCCceeeeeeecCCCCCCCCHHHHHhcCCCEEeccchHH
Q 012478 246 SRAFADAGADVLFI---DALA-----SKEEMKAFCEI---SPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLI 314 (462)
Q Consensus 246 akAy~eAGAD~Ifi---e~~~-----s~eei~~i~~~---v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~ll 314 (462)
.+.+.+..-..||+ .+++ -.++++++.+. .-..|+. +.+|=++| =+.+++.+.|..-|+.|+.++
T Consensus 160 i~~i~~~a~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~~Pi~---vGFGI~~~-e~~~~~~~~GADGvVVGSalv 235 (263)
T CHL00200 160 IQKIARAAPGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTNKPII---LGFGISTS-EQIKQIKGWNINGIVIGSACV 235 (263)
T ss_pred HHHHHHhCCCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcCCCEE---EECCcCCH-HHHHHHHhcCCCEEEECHHHH
Confidence 77777666546665 2321 11334444432 2224544 23322222 245667889999999999886
Q ss_pred HH
Q 012478 315 GV 316 (462)
Q Consensus 315 ~a 316 (462)
..
T Consensus 236 ~~ 237 (263)
T CHL00200 236 QI 237 (263)
T ss_pred HH
Confidence 53
No 179
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=94.57 E-value=2.1 Score=44.06 Aligned_cols=88 Identities=19% Similarity=0.177 Sum_probs=57.5
Q ss_pred HHHHHHHHhCCcEEEecc---HHHHhhhcc----CCCCCCCCHHH----HHHHHHHHHhhc--CCcEEEeCC------CC
Q 012478 100 LSAKLVEKSGFSFCFTSG---FSISAARLA----LPDTGFISYGE----MVDQGQLITQAV--SIPVIGDGD------NG 160 (462)
Q Consensus 100 lSArl~e~aGfdaI~vSG---~avSas~lG----~PD~g~vsl~E----ml~~~~~I~ra~--~iPVIaD~D------tG 160 (462)
-.|+.+.++|||.|-+-+ +-+.-..-- .-|---=+++. +++.++.|.+++ +.||.+|+- .|
T Consensus 153 ~aA~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g 232 (338)
T cd04733 153 HAARLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGG 232 (338)
T ss_pred HHHHHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCC
Confidence 567889999999998763 333211001 11221114443 455667777776 489999984 45
Q ss_pred CCCHHHHHHHHHHHHHhCccEEEeCCCC
Q 012478 161 YGNAMNVKRTVKGYIKAGFAGIILEDQV 188 (462)
Q Consensus 161 yG~~~nv~rtVk~l~~AGaaGI~IEDq~ 188 (462)
+ +.....+.++.++++|++-|++-...
T Consensus 233 ~-~~eea~~ia~~Le~~Gvd~iev~~g~ 259 (338)
T cd04733 233 F-TEEDALEVVEALEEAGVDLVELSGGT 259 (338)
T ss_pred C-CHHHHHHHHHHHHHcCCCEEEecCCC
Confidence 4 45678888999999999999986553
No 180
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=94.57 E-value=5.6 Score=39.73 Aligned_cols=87 Identities=13% Similarity=0.133 Sum_probs=62.3
Q ss_pred HHHHHHhCCCceE--ecccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeC
Q 012478 80 SLRQILELPGVHQ--GPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDG 157 (462)
Q Consensus 80 ~LR~ll~~~~~iv--~p~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~ 157 (462)
.|++.|+++++.. .....++..+.++..+|||.+++=. -+ +.++++++.+.++.+ +..+++.+|=.
T Consensus 2 ~lk~~l~~g~~~~G~~~~~~sp~~~e~~a~~G~D~v~iD~------EH-----g~~~~~~~~~~~~a~-~~~g~~~~VRv 69 (249)
T TIGR03239 2 RFRQDLLARETLIGCWSALGNPITTEVLGLAGFDWLLLDG------EH-----APNDVLTFIPQLMAL-KGSASAPVVRP 69 (249)
T ss_pred hHHHHHHcCCceEEEEEcCCCcHHHHHHHhcCCCEEEEec------cc-----CCCCHHHHHHHHHHH-hhcCCCcEEEC
Confidence 4788888888743 3456678889999999999999742 12 356777777777664 45667777777
Q ss_pred CCCCCCHHHHHHHHHHHHHhCccEEEe
Q 012478 158 DNGYGNAMNVKRTVKGYIKAGFAGIIL 184 (462)
Q Consensus 158 DtGyG~~~nv~rtVk~l~~AGaaGI~I 184 (462)
+.. ++ ..+++..++|+.||.+
T Consensus 70 p~~--~~----~~i~r~LD~Ga~gIiv 90 (249)
T TIGR03239 70 PWN--EP----VIIKRLLDIGFYNFLI 90 (249)
T ss_pred CCC--CH----HHHHHHhcCCCCEEEe
Confidence 654 43 4456777899999976
No 181
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=94.52 E-value=0.15 Score=50.70 Aligned_cols=87 Identities=16% Similarity=0.143 Sum_probs=66.5
Q ss_pred HHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhH
Q 012478 171 VKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFA 250 (462)
Q Consensus 171 Vk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~ 250 (462)
.+.++++|+.+|.+-|...--.+|+.+. ..++.+|++..+++++++.. ...|++=-|.-.....+++++-++.|.
T Consensus 25 A~i~e~aG~dai~v~~s~~a~~~G~pD~-~~vtl~em~~~~~~I~r~~~----~~pviaD~~~G~g~~~~~~~~~~~~l~ 99 (240)
T cd06556 25 AKQFADAGLNVMLVGDSQGMTVAGYDDT-LPYPVNDVPYHVRAVRRGAP----LALIVADLPFGAYGAPTAAFELAKTFM 99 (240)
T ss_pred HHHHHHcCCCEEEEChHHHHHhcCCCCC-CCcCHHHHHHHHHHHHhhCC----CCCEEEeCCCCCCcCHHHHHHHHHHHH
Confidence 4677789999999988754344576553 56899999999999887752 345666555543335588999999999
Q ss_pred hcCCcEEEecCC
Q 012478 251 DAGADVLFIDAL 262 (462)
Q Consensus 251 eAGAD~Ifie~~ 262 (462)
++||++|-+|.-
T Consensus 100 ~aGa~gv~iED~ 111 (240)
T cd06556 100 RAGAAGVKIEGG 111 (240)
T ss_pred HcCCcEEEEcCc
Confidence 999999999984
No 182
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=94.51 E-value=0.43 Score=46.01 Aligned_cols=152 Identities=24% Similarity=0.309 Sum_probs=90.6
Q ss_pred HHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccE
Q 012478 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAG 181 (462)
Q Consensus 102 Arl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaG 181 (462)
++.+.++|++.|=++ +|-...-.++.+ ..+...... ..+.+-.. .....+.+.++.+.++|+..
T Consensus 20 ~~~L~~~Gv~~iEvg----------~~~~~~~~~~~v-~~~~~~~~~--~~~~~~~~---~~~~~i~~~~~~~~~~g~~~ 83 (237)
T PF00682_consen 20 AKALDEAGVDYIEVG----------FPFASEDDFEQV-RRLREALPN--ARLQALCR---ANEEDIERAVEAAKEAGIDI 83 (237)
T ss_dssp HHHHHHHTTSEEEEE----------HCTSSHHHHHHH-HHHHHHHHS--SEEEEEEE---SCHHHHHHHHHHHHHTTSSE
T ss_pred HHHHHHhCCCEEEEc----------ccccCHHHHHHh-hhhhhhhcc--cccceeee---ehHHHHHHHHHhhHhccCCE
Confidence 456778999998887 111111112222 222222222 33333222 34566777788888999999
Q ss_pred EEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEec-
Q 012478 182 IILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFID- 260 (462)
Q Consensus 182 I~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie- 260 (462)
+.+-....+. |...+--.+.+++++++..+++..++.|.+. .+.=+|+ .....++.++-+++..++|+|.|.+.
T Consensus 84 i~i~~~~s~~---~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v-~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~i~l~D 158 (237)
T PF00682_consen 84 IRIFISVSDL---HIRKNLNKSREEALERIEEAVKYAKELGYEV-AFGCEDA-SRTDPEELLELAEALAEAGADIIYLAD 158 (237)
T ss_dssp EEEEEETSHH---HHHHHTCSHHHHHHHHHHHHHHHHHHTTSEE-EEEETTT-GGSSHHHHHHHHHHHHHHT-SEEEEEE
T ss_pred EEecCcccHH---HHHHhhcCCHHHHHHHHHHHHHHHHhcCCce-EeCcccc-ccccHHHHHHHHHHHHHcCCeEEEeeC
Confidence 9998876431 2111223467888999988888888765444 2222343 33466888888999999999999875
Q ss_pred --CCCCHHHHHHHHHh
Q 012478 261 --ALASKEEMKAFCEI 274 (462)
Q Consensus 261 --~~~s~eei~~i~~~ 274 (462)
|.-+++++..+.+.
T Consensus 159 t~G~~~P~~v~~lv~~ 174 (237)
T PF00682_consen 159 TVGIMTPEDVAELVRA 174 (237)
T ss_dssp TTS-S-HHHHHHHHHH
T ss_pred ccCCcCHHHHHHHHHH
Confidence 34566666666543
No 183
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=94.44 E-value=0.2 Score=50.10 Aligned_cols=173 Identities=17% Similarity=0.189 Sum_probs=99.7
Q ss_pred ccccCCCCCccceeecceeeeeccc--hhhhhhcccCCCCceeecccccCCCccccccCchHHHHHHHHhCCCceEec-c
Q 012478 19 LFHSNSRPSSFLGINNNTISFNKTN--TNTLLLNTATNPGTINRTRVYRKNSTGVEACLSPAKSLRQILELPGVHQGP-A 95 (462)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~Pr~~~~~R~y~rgs~~~~~a~~~a~~LR~ll~~~~~iv~p-~ 95 (462)
+|-..-+|..+-+.+|-+=-.+-.. ....+.+.+-.-.|..+...-..-++-++- -..-+.-.. |-+.+..++| +
T Consensus 60 ~~l~~l~~~~~~~LPNTaGc~taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD~-~etl~Aae~-Lv~eGF~VlPY~ 137 (262)
T COG2022 60 GILDLLIPLGVTLLPNTAGCRTAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPDP-IETLKAAEQ-LVKEGFVVLPYT 137 (262)
T ss_pred hHHHHhhhcCcEeCCCccccCCHHHHHHHHHHHHHHccCCeEEEEEecCCcccCCCh-HHHHHHHHH-HHhCCCEEeecc
Confidence 4444556777778888654322211 122344555566777665444333333331 111222233 3345688888 5
Q ss_pred cCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHH
Q 012478 96 CFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYI 175 (462)
Q Consensus 96 ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~ 175 (462)
.=|..-||-++++|+.++.=-+.-+- |-+|.-. .+..+.|....++|||+|+ |-|.+.++.. ..
T Consensus 138 ~dD~v~arrLee~GcaavMPl~aPIG-Sg~G~~n---------~~~l~iiie~a~VPviVDA--GiG~pSdAa~----aM 201 (262)
T COG2022 138 TDDPVLARRLEEAGCAAVMPLGAPIG-SGLGLQN---------PYNLEIIIEEADVPVIVDA--GIGTPSDAAQ----AM 201 (262)
T ss_pred CCCHHHHHHHHhcCceEecccccccc-CCcCcCC---------HHHHHHHHHhCCCCEEEeC--CCCChhHHHH----HH
Confidence 56889999999999998876554443 3344422 2345566666799999996 5556655553 33
Q ss_pred HhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHH
Q 012478 176 KAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARK 219 (462)
Q Consensus 176 ~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~ 219 (462)
|.|++||.+.--+. + . -++--|++-.+.|++|.+
T Consensus 202 ElG~DaVL~NTAiA-----~-A----~DPv~MA~Af~~Av~AGr 235 (262)
T COG2022 202 ELGADAVLLNTAIA-----R-A----KDPVAMARAFALAVEAGR 235 (262)
T ss_pred hcccceeehhhHhh-----c-c----CChHHHHHHHHHHHHHhH
Confidence 68999999865431 0 1 122345666666666654
No 184
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=94.36 E-value=1.4 Score=44.23 Aligned_cols=141 Identities=21% Similarity=0.233 Sum_probs=88.4
Q ss_pred CCCCHHHHHHHHHHHHHh-CccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhccc
Q 012478 160 GYGNAMNVKRTVKGYIKA-GFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALS 238 (462)
Q Consensus 160 GyG~~~nv~rtVk~l~~A-GaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~g 238 (462)
|--++..+.++.+...++ |-.=||||=- .+.+.|.| +.++.++|+..-.+ .+|.|.--|-..
T Consensus 71 Gc~tA~EAv~~A~laRe~~~t~wIKLEVi--------~D~~~L~P--D~~etl~Aae~Lv~---eGF~VlPY~~~D---- 133 (247)
T PF05690_consen 71 GCRTAEEAVRTARLAREAFGTNWIKLEVI--------GDDKTLLP--DPIETLKAAEILVK---EGFVVLPYCTDD---- 133 (247)
T ss_dssp T-SSHHHHHHHHHHHHHTTS-SEEEE--B--------S-TTT--B---HHHHHHHHHHHHH---TT-EEEEEE-S-----
T ss_pred CCCCHHHHHHHHHHHHHHcCCCeEEEEEe--------CCCCCcCC--ChhHHHHHHHHHHH---CCCEEeecCCCC----
Confidence 333677777777777664 7888999853 34455666 34778888887766 479888775432
Q ss_pred HHHHHHHHHHhHhcCCcEEEecC--------CCCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcCCCEEecc
Q 012478 239 LEESLRRSRAFADAGADVLFIDA--------LASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYP 310 (462)
Q Consensus 239 ldeAI~RakAy~eAGAD~Ifie~--------~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp 310 (462)
.--|++++++||-+|++.+ +.+.+.++.+++.++ +|+++.. |=.+| -...+-.|||+.-|+.-
T Consensus 134 ----~v~akrL~d~GcaavMPlgsPIGSg~Gi~n~~~l~~i~~~~~-vPvIvDA---GiG~p-Sdaa~AMElG~daVLvN 204 (247)
T PF05690_consen 134 ----PVLAKRLEDAGCAAVMPLGSPIGSGRGIQNPYNLRIIIERAD-VPVIVDA---GIGTP-SDAAQAMELGADAVLVN 204 (247)
T ss_dssp ----HHHHHHHHHTT-SEBEEBSSSTTT---SSTHHHHHHHHHHGS-SSBEEES------SH-HHHHHHHHTT-SEEEES
T ss_pred ----HHHHHHHHHCCCCEEEecccccccCcCCCCHHHHHHHHHhcC-CcEEEeC---CCCCH-HHHHHHHHcCCceeehh
Confidence 2359999999999999874 568899999999885 7876542 21233 24578899999999986
Q ss_pred chHHH-----HHHHHHHHHHH
Q 012478 311 LSLIG-----VSVRAMQDALT 326 (462)
Q Consensus 311 ~~ll~-----aa~~Am~~~l~ 326 (462)
..... .+.+||+.+.+
T Consensus 205 TAiA~A~dPv~MA~Af~~AV~ 225 (247)
T PF05690_consen 205 TAIAKAKDPVAMARAFKLAVE 225 (247)
T ss_dssp HHHHTSSSHHHHHHHHHHHHH
T ss_pred hHHhccCCHHHHHHHHHHHHH
Confidence 65432 24445554433
No 185
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=94.31 E-value=2.3 Score=43.01 Aligned_cols=159 Identities=14% Similarity=0.046 Sum_probs=84.7
Q ss_pred HHHHHHHHhCCcEEEecc---HHHHhh----hccCCCCCCCCHH----HHHHHHHHHHhhc--CCcEEEeCCCCC----C
Q 012478 100 LSAKLVEKSGFSFCFTSG---FSISAA----RLALPDTGFISYG----EMVDQGQLITQAV--SIPVIGDGDNGY----G 162 (462)
Q Consensus 100 lSArl~e~aGfdaI~vSG---~avSas----~lG~PD~g~vsl~----Eml~~~~~I~ra~--~iPVIaD~DtGy----G 162 (462)
-.|+.++++|||+|-+-+ +-+.-. ..-..|.--=+++ -+++.++.|.+.+ +.||.+++.... |
T Consensus 145 ~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g 224 (327)
T cd02803 145 AAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGG 224 (327)
T ss_pred HHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCC
Confidence 467888999999997763 222110 0111221111233 2355667777766 689999887531 2
Q ss_pred -CHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHH
Q 012478 163 -NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEE 241 (462)
Q Consensus 163 -~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~glde 241 (462)
+.....+.++.++++|++.|++-........ +.....-.+.....+-++.+++.. +..++..++...
T Consensus 225 ~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~-~~~~~~~~~~~~~~~~~~~ir~~~---~iPVi~~Ggi~t-------- 292 (327)
T cd02803 225 LTLEEAIEIAKALEEAGVDALHVSGGSYESPP-PIIPPPYVPEGYFLELAEKIKKAV---KIPVIAVGGIRD-------- 292 (327)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCcccc-cccCCCCCCcchhHHHHHHHHHHC---CCCEEEeCCCCC--------
Confidence 3567888999999999999998655321100 000000001111222333333322 345666555432
Q ss_pred HHHHHHHhHhc-CCcEEEecC--CCCHHHHHHH
Q 012478 242 SLRRSRAFADA-GADVLFIDA--LASKEEMKAF 271 (462)
Q Consensus 242 AI~RakAy~eA-GAD~Ifie~--~~s~eei~~i 271 (462)
.+.++.+.++ |||+|.+-- +.+++..+++
T Consensus 293 -~~~a~~~l~~g~aD~V~igR~~ladP~l~~k~ 324 (327)
T cd02803 293 -PEVAEEILAEGKADLVALGRALLADPDLPNKA 324 (327)
T ss_pred -HHHHHHHHHCCCCCeeeecHHHHhCccHHHHH
Confidence 2245566666 799998732 3444444443
No 186
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=94.23 E-value=0.25 Score=49.94 Aligned_cols=91 Identities=19% Similarity=0.117 Sum_probs=58.8
Q ss_pred HHHHHHHhC-CCceEecccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhc--CCcEEE
Q 012478 79 KSLRQILEL-PGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV--SIPVIG 155 (462)
Q Consensus 79 ~~LR~ll~~-~~~iv~p~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~--~iPVIa 155 (462)
+.++++.+. +.++++-++...-.|+.++++|+++|.+++.+- . ..|.+..+++-+. .|++.. ++|||+
T Consensus 162 ~~i~~l~~~~~~pvivK~v~s~~~a~~a~~~G~d~I~v~~~gG---~--~~~~g~~~~~~l~----~i~~~~~~~ipvia 232 (299)
T cd02809 162 DDLAWLRSQWKGPLILKGILTPEDALRAVDAGADGIVVSNHGG---R--QLDGAPATIDALP----EIVAAVGGRIEVLL 232 (299)
T ss_pred HHHHHHHHhcCCCEEEeecCCHHHHHHHHHCCCCEEEEcCCCC---C--CCCCCcCHHHHHH----HHHHHhcCCCeEEE
Confidence 445555543 567888888888999999999999999986331 0 1244444444333 333333 599999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhCccEEEe
Q 012478 156 DGDNGYGNAMNVKRTVKGYIKAGFAGIIL 184 (462)
Q Consensus 156 D~DtGyG~~~nv~rtVk~l~~AGaaGI~I 184 (462)
|..- .+..++. +.+ ..||+||.|
T Consensus 233 ~GGI--~~~~d~~---kal-~lGAd~V~i 255 (299)
T cd02809 233 DGGI--RRGTDVL---KAL-ALGADAVLI 255 (299)
T ss_pred eCCC--CCHHHHH---HHH-HcCCCEEEE
Confidence 9543 3443443 344 589999998
No 187
>PRK15452 putative protease; Provisional
Probab=94.21 E-value=3.3 Score=44.80 Aligned_cols=146 Identities=11% Similarity=0.016 Sum_probs=92.7
Q ss_pred cCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCC--HHHHHHHHHH
Q 012478 96 CFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGN--AMNVKRTVKG 173 (462)
Q Consensus 96 ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~--~~nv~rtVk~ 173 (462)
|-|.-.++.+-++|+|+||+++-..++ . +.....+.+|+.+.++. ++..++.|.+=...=..+ ...+.+.++.
T Consensus 10 ag~~e~l~aAi~~GADaVY~G~~~~~~-R---~~~~~f~~edl~eav~~-ah~~g~kvyvt~n~i~~e~el~~~~~~l~~ 84 (443)
T PRK15452 10 AGTLKNMRYAFAYGADAVYAGQPRYSL-R---VRNNEFNHENLALGINE-AHALGKKFYVVVNIAPHNAKLKTFIRDLEP 84 (443)
T ss_pred CCCHHHHHHHHHCCCCEEEECCCccch-h---hhccCCCHHHHHHHHHH-HHHcCCEEEEEecCcCCHHHHHHHHHHHHH
Confidence 444455566668999999999644331 1 11245677776655544 344445554443332222 2467777888
Q ss_pred HHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcC
Q 012478 174 YIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAG 253 (462)
Q Consensus 174 l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAG 253 (462)
+.++|++||.+-|-- -+..+++ ..+++.|.+-|....-.. .-++.|.+.|
T Consensus 85 l~~~gvDgvIV~d~G---------------------~l~~~ke----~~p~l~ih~stqlni~N~-----~a~~f~~~lG 134 (443)
T PRK15452 85 VIAMKPDALIMSDPG---------------------LIMMVRE----HFPEMPIHLSVQANAVNW-----ATVKFWQQMG 134 (443)
T ss_pred HHhCCCCEEEEcCHH---------------------HHHHHHH----hCCCCeEEEEecccCCCH-----HHHHHHHHCC
Confidence 889999999997631 1222222 146888888887654322 2478889999
Q ss_pred CcEEEecCCCCHHHHHHHHHhCC
Q 012478 254 ADVLFIDALASKEEMKAFCEISP 276 (462)
Q Consensus 254 AD~Ifie~~~s~eei~~i~~~v~ 276 (462)
++-+.+.-=-+.+|++.+.+..+
T Consensus 135 ~~rvvLSrELsl~EI~~i~~~~~ 157 (443)
T PRK15452 135 LTRVILSRELSLEEIEEIRQQCP 157 (443)
T ss_pred CcEEEECCcCCHHHHHHHHhhCC
Confidence 99998866557899999986653
No 188
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=94.17 E-value=1.4 Score=45.72 Aligned_cols=150 Identities=19% Similarity=0.241 Sum_probs=84.6
Q ss_pred HHHHHHHHHHhCccEEEeCCCC-----------CCCCCCCCCCCcccCHHHHH-HHHHHHHHHHHhhCCCeEEEEecchh
Q 012478 167 VKRTVKGYIKAGFAGIILEDQV-----------SPKGCGHTRGRKVVSREEAV-MRIKAAVDARKESGSDIVIVARTDSR 234 (462)
Q Consensus 167 v~rtVk~l~~AGaaGI~IEDq~-----------~PKrCGH~~gk~Lvp~ee~~-~kI~AA~~Ar~~~g~d~vIiARTDA~ 234 (462)
..+++++..++|++||.|--.- .+||--.-+|- +.-.-.++ +-|++++++ .|.|+ |..|....
T Consensus 154 f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGs-lenR~rf~~eii~air~~---vg~d~-v~vRis~~ 228 (338)
T cd02933 154 FRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGS-IENRARFLLEVVDAVAEA---IGADR-VGIRLSPF 228 (338)
T ss_pred HHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCc-HHHhhhHHHHHHHHHHHH---hCCCc-eEEEECcc
Confidence 3456778888999999996442 13444333332 32222222 333333333 25564 66776442
Q ss_pred h-------cccHHHHHHHHHHhHhcCCcEEEe-cCC-------CCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHH-
Q 012478 235 Q-------ALSLEESLRRSRAFADAGADVLFI-DAL-------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLE- 298 (462)
Q Consensus 235 ~-------~~gldeAI~RakAy~eAGAD~Ifi-e~~-------~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~e- 298 (462)
. ...++|+++=++.+.++|+|.|=+ .+. ...+.++++.+.++ +|++++ |+-+|. ..++
T Consensus 229 ~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~~~-ipvi~~----G~i~~~-~a~~~ 302 (338)
T cd02933 229 GTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEPRVAGNPEDQPPDFLDFLRKAFK-GPLIAA----GGYDAE-SAEAA 302 (338)
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcccccchHHHHHHHHHcC-CCEEEE----CCCCHH-HHHHH
Confidence 1 236789999999999999999977 332 12345666666664 676543 233332 2333
Q ss_pred HHhcCCCEEeccchHHHHHHHHHHHHHHHHHcCC
Q 012478 299 LEELGFKLVAYPLSLIGVSVRAMQDALTAIKGGR 332 (462)
Q Consensus 299 L~~lGv~~V~yp~~ll~aa~~Am~~~l~~l~~g~ 332 (462)
|++-++.+|.++-.++.- -+....+++|.
T Consensus 303 l~~g~~D~V~~gR~~lad-----P~~~~k~~~g~ 331 (338)
T cd02933 303 LADGKADLVAFGRPFIAN-----PDLVERLKNGA 331 (338)
T ss_pred HHcCCCCEEEeCHhhhhC-----cCHHHHHhcCC
Confidence 334458888887654432 24445555553
No 189
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=94.17 E-value=2.5 Score=41.40 Aligned_cols=171 Identities=19% Similarity=0.242 Sum_probs=99.6
Q ss_pred ChH-HHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHH
Q 012478 98 DAL-SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIK 176 (462)
Q Consensus 98 Dal-SArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~ 176 (462)
|+. .|+..++.|++-+++--+-- . .|.+. .....++|++.+.+||.++. |..+ .+.++++..
T Consensus 36 dp~~~a~~~~~~g~~~l~i~DLd~--~-~~~~~--------n~~~i~~i~~~~~~~v~vgG--Gir~----~edv~~~l~ 98 (233)
T cd04723 36 DPLDVARAYKELGFRGLYIADLDA--I-MGRGD--------NDEAIRELAAAWPLGLWVDG--GIRS----LENAQEWLK 98 (233)
T ss_pred CHHHHHHHHHHCCCCEEEEEeCcc--c-cCCCc--------cHHHHHHHHHhCCCCEEEec--CcCC----HHHHHHHHH
Confidence 444 46777888999999985441 1 25443 35677888888899999885 4444 455678888
Q ss_pred hCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhh--------cccHHHHHHHHHH
Q 012478 177 AGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQ--------ALSLEESLRRSRA 248 (462)
Q Consensus 177 AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~--------~~gldeAI~RakA 248 (462)
+||.=|.| +.. .+.- +++.++ ....+.+ .|+.--|... ...+.+.+++
T Consensus 99 ~Ga~~vii-gt~------------~~~~-~~~~~~------~~~~~~~-~iivslD~~~~~~~~~~~~~~~~~~~~~--- 154 (233)
T cd04723 99 RGASRVIV-GTE------------TLPS-DDDEDR------LAALGEQ-RLVLSLDFRGGQLLKPTDFIGPEELLRR--- 154 (233)
T ss_pred cCCCeEEE-cce------------eccc-hHHHHH------HHhcCCC-CeEEEEeccCCeeccccCcCCHHHHHHH---
Confidence 99998887 321 1111 222221 1111211 2222223321 1235555554
Q ss_pred hHhcCCcEEEecCC--------CCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 012478 249 FADAGADVLFIDAL--------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (462)
Q Consensus 249 y~eAGAD~Ifie~~--------~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~ll~ 315 (462)
|.+. ++.+.+-.+ .+.+.++++++..+ +|+. .+||-...-..++|.++|+..|+.+..++.
T Consensus 155 ~~~~-~~~li~~di~~~G~~~g~~~~~~~~i~~~~~-ipvi----~~GGi~s~edi~~l~~~G~~~vivGsal~~ 223 (233)
T cd04723 155 LAKW-PEELIVLDIDRVGSGQGPDLELLERLAARAD-IPVI----AAGGVRSVEDLELLKKLGASGALVASALHD 223 (233)
T ss_pred HHHh-CCeEEEEEcCccccCCCcCHHHHHHHHHhcC-CCEE----EeCCCCCHHHHHHHHHcCCCEEEEehHHHc
Confidence 4455 665554433 45678889988754 4543 333433223567788999999999886543
No 190
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=94.17 E-value=1.9 Score=40.40 Aligned_cols=170 Identities=16% Similarity=0.191 Sum_probs=86.0
Q ss_pred HHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHHhCcc
Q 012478 101 SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFA 180 (462)
Q Consensus 101 SArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaa 180 (462)
.++.++++|+|.|-+. + +...-.|... + -++.++.|.+.++.|+.+|.=. | ++. +-++.+.++|++
T Consensus 16 ~~~~~~~~g~d~i~~~---~-~Dg~~~~~~~-~----~~~~v~~i~~~~~~~v~v~lm~-~-~~~---~~~~~~~~~gad 81 (210)
T TIGR01163 16 EVKAVEEAGADWIHVD---V-MDGHFVPNLT-F----GPPVLEALRKYTDLPIDVHLMV-E-NPD---RYIEDFAEAGAD 81 (210)
T ss_pred HHHHHHHcCCCEEEEc---C-CCCCCCCCcc-c----CHHHHHHHHhcCCCcEEEEeee-C-CHH---HHHHHHHHcCCC
Confidence 3466778899999875 1 1111123222 2 2345566665566776554321 2 332 346777899999
Q ss_pred EEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEec
Q 012478 181 GIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFID 260 (462)
Q Consensus 181 GI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie 260 (462)
||++=+.. .++....++.++.. +..+.+.--.+. . .++.++|. .++|.+.+-
T Consensus 82 gv~vh~~~---------------~~~~~~~~~~~~~~----g~~~~~~~~~~t----~----~e~~~~~~-~~~d~i~~~ 133 (210)
T TIGR01163 82 IITVHPEA---------------SEHIHRLLQLIKDL----GAKAGIVLNPAT----P----LEFLEYVL-PDVDLVLLM 133 (210)
T ss_pred EEEEccCC---------------chhHHHHHHHHHHc----CCcEEEEECCCC----C----HHHHHHHH-hhCCEEEEE
Confidence 98884321 12333333333322 334433311111 1 34556663 468987662
Q ss_pred CC------C--CH---HHHHHHHHhCCC--CceeeeeeecCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 012478 261 AL------A--SK---EEMKAFCEISPL--VPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (462)
Q Consensus 261 ~~------~--s~---eei~~i~~~v~~--vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~ll~ 315 (462)
+. . .. +.++++.+.+.. .+.+ ++..||-++ =+..++.+.|+..++.+..++.
T Consensus 134 ~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~--i~v~GGI~~-env~~l~~~gad~iivgsai~~ 198 (210)
T TIGR01163 134 SVNPGFGGQKFIPDTLEKIREVRKMIDENGLSIL--IEVDGGVND-DNARELAEAGADILVAGSAIFG 198 (210)
T ss_pred EEcCCCCcccccHHHHHHHHHHHHHHHhcCCCce--EEEECCcCH-HHHHHHHHcCCCEEEEChHHhC
Confidence 21 1 11 233334332211 0122 222335443 3456777889999999877764
No 191
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=94.16 E-value=7.1 Score=39.36 Aligned_cols=177 Identities=16% Similarity=0.177 Sum_probs=99.1
Q ss_pred cccCChHHHHHHHHhCCcEEEec-cHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEe-----CCCCCCCH--H
Q 012478 94 PACFDALSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGD-----GDNGYGNA--M 165 (462)
Q Consensus 94 p~ayDalSArl~e~aGfdaI~vS-G~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD-----~DtGyG~~--~ 165 (462)
.++.+.-+|..+++.|++-|=+- .+. -.|+.|--.++..+ .+.+++||.+= .|+=|.+. .
T Consensus 6 vcv~s~~~a~~A~~~GAdRiELc~~L~---------~GGlTPS~g~i~~~---~~~~~ipv~vMIRPR~gdF~Ys~~E~~ 73 (248)
T PRK11572 6 ICCYSMECALTAQQAGADRIELCAAPK---------EGGLTPSLGVLKSV---RERVTIPVHPIIRPRGGDFCYSDGEFA 73 (248)
T ss_pred EEECCHHHHHHHHHcCCCEEEEccCcC---------CCCcCCCHHHHHHH---HHhcCCCeEEEEecCCCCCCCCHHHHH
Confidence 47889999999999999988543 322 22333333333333 34557887652 24446654 3
Q ss_pred HHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEe-cchhhcccHHHHHH
Q 012478 166 NVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVAR-TDSRQALSLEESLR 244 (462)
Q Consensus 166 nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiAR-TDA~~~~gldeAI~ 244 (462)
...+.++.+.++|++||.+- -. ...--++.+-+ +..+++.. +-+ +..-| -|.. .+..+|++
T Consensus 74 ~M~~di~~~~~~GadGvV~G-~L--------~~dg~vD~~~~----~~Li~~a~--~~~-vTFHRAfD~~--~d~~~al~ 135 (248)
T PRK11572 74 AMLEDIATVRELGFPGLVTG-VL--------DVDGHVDMPRM----RKIMAAAG--PLA-VTFHRAFDMC--ANPLNALK 135 (248)
T ss_pred HHHHHHHHHHHcCCCEEEEe-eE--------CCCCCcCHHHH----HHHHHHhc--CCc-eEEechhhcc--CCHHHHHH
Confidence 45567999999999999882 11 11112454433 22333332 112 22333 2221 23445555
Q ss_pred HHHHhHhcCCcEEEecCCC-----CHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcCCCEEe
Q 012478 245 RSRAFADAGADVLFIDALA-----SKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVA 308 (462)
Q Consensus 245 RakAy~eAGAD~Ifie~~~-----s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~ 308 (462)
.. .+.|.|-|+-.+-. ..+.++++.+...+ .. ++.++|-++ -..++|.+.|++-+-
T Consensus 136 ~l---~~lG~~rILTSGg~~~a~~g~~~L~~lv~~a~~---~~-Im~GgGV~~-~Nv~~l~~tG~~~~H 196 (248)
T PRK11572 136 QL---ADLGVARILTSGQQQDAEQGLSLIMELIAASDG---PI-IMAGAGVRL-SNLHKFLDAGVREVH 196 (248)
T ss_pred HH---HHcCCCEEECCCCCCCHHHHHHHHHHHHHhcCC---CE-EEeCCCCCH-HHHHHHHHcCCCEEe
Confidence 54 45699999976643 24566666665442 22 677766543 245667677877553
No 192
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.16 E-value=0.98 Score=45.85 Aligned_cols=145 Identities=20% Similarity=0.190 Sum_probs=88.4
Q ss_pred HHHHHHHHhCCCceEecccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHH------HHHHHHHHHhhcC-
Q 012478 78 AKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGE------MVDQGQLITQAVS- 150 (462)
Q Consensus 78 a~~LR~ll~~~~~iv~p~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~E------ml~~~~~I~ra~~- 150 (462)
+.++.+..+.+...++.+=-.....|.+++. |++++|. . .-++|+.|.-++--+. +.+.++.+.+...
T Consensus 107 t~~~v~~~~~~~~~i~~TRKt~Pg~r~~~k~---Av~~GGg-~-~HR~gL~d~vlikdnHi~~~g~i~~~v~~~k~~~p~ 181 (273)
T PRK05848 107 TSRYVEALESHKVKLLDTRKTRPLLRIFEKY---SVRNGGA-S-NHRLGLDDCLMLKDTHLKHIKDLKEFIQHARKNIPF 181 (273)
T ss_pred HHHHHHHhcCCCeEEEecCCCCcchhHHHHH---HHHhCCC-c-cccCCchhhhCcCHHHHHHHCcHHHHHHHHHHhCCC
Confidence 4456665655555666666667777888775 7777774 3 2478999987765543 3334445544443
Q ss_pred -CcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEE
Q 012478 151 -IPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVA 229 (462)
Q Consensus 151 -iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiA 229 (462)
.+|.++.++ .++ ++...++|++.|.+ |.. ++++ |+.++...+...+...|.|
T Consensus 182 ~~~I~VEv~t----lee----a~~A~~~GaDiI~L-Dn~--------------~~e~----l~~~v~~~~~~~~~~~ieA 234 (273)
T PRK05848 182 TAKIEIECES----LEE----AKNAMNAGADIVMC-DNM--------------SVEE----IKEVVAYRNANYPHVLLEA 234 (273)
T ss_pred CceEEEEeCC----HHH----HHHHHHcCCCEEEE-CCC--------------CHHH----HHHHHHHhhccCCCeEEEE
Confidence 679998774 333 34566899999999 432 2333 3333332221123444433
Q ss_pred ecchhhcccHHHHHHHHHHhHhcCCcEEEecCC
Q 012478 230 RTDSRQALSLEESLRRSRAFADAGADVLFIDAL 262 (462)
Q Consensus 230 RTDA~~~~gldeAI~RakAy~eAGAD~Ifie~~ 262 (462)
- -++ ..+.+++|++.|+|+|.+-++
T Consensus 235 s------GgI--t~~ni~~ya~~GvD~IsvG~l 259 (273)
T PRK05848 235 S------GNI--TLENINAYAKSGVDAISSGSL 259 (273)
T ss_pred E------CCC--CHHHHHHHHHcCCCEEEeChh
Confidence 2 233 266899999999999998665
No 193
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=94.06 E-value=1.9 Score=41.16 Aligned_cols=139 Identities=20% Similarity=0.167 Sum_probs=78.8
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecc
Q 012478 153 VIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTD 232 (462)
Q Consensus 153 VIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTD 232 (462)
.+++.+.|..........++...+.||+.|-+==....-++|+ .+++.+-|.+++++.. |..++++--+.
T Consensus 57 ~~~~fp~g~~~~~~k~~eve~A~~~GAdevdvv~~~g~~~~~~--------~~~~~~ei~~v~~~~~--g~~lkvI~e~~ 126 (203)
T cd00959 57 TVIGFPLGATTTEVKVAEAREAIADGADEIDMVINIGALKSGD--------YEAVYEEIAAVVEACG--GAPLKVILETG 126 (203)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHcCCCEEEEeecHHHHhCCC--------HHHHHHHHHHHHHhcC--CCeEEEEEecC
Confidence 4456666654445556668899999999997633221111222 2567777888887765 44555543333
Q ss_pred hhhcccHHHHHHHHHHhHhcCCcEEEec-----CCCCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcCCCEE
Q 012478 233 SRQALSLEESLRRSRAFADAGADVLFID-----ALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLV 307 (462)
Q Consensus 233 A~~~~gldeAI~RakAy~eAGAD~Ifie-----~~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V 307 (462)
.. ..++...-++...|+|||.|=.. .-.+.+.++.+.+.+. .+.++- ..||-++ .-...++-++|..|+
T Consensus 127 ~l---~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~-~~v~ik-~aGGikt-~~~~l~~~~~g~~ri 200 (203)
T cd00959 127 LL---TDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVG-GRVGVK-AAGGIRT-LEDALAMIEAGATRI 200 (203)
T ss_pred CC---CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhC-CCceEE-EeCCCCC-HHHHHHHHHhChhhc
Confidence 33 23455555778889999998654 2345677777766654 222221 2232332 122345555665554
No 194
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=94.04 E-value=1.1 Score=45.92 Aligned_cols=114 Identities=19% Similarity=0.327 Sum_probs=75.8
Q ss_pred CCcEEEeCCCCCC--CHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEE
Q 012478 150 SIPVIGDGDNGYG--NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVI 227 (462)
Q Consensus 150 ~iPVIaD~DtGyG--~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vI 227 (462)
.+|+.+= .|++ .+..+.+.++++.++|..+++| ++||..... -..+..+++|++++++. |+++.|
T Consensus 126 ~v~~~~~--~~~~~~~~~~~~~~a~~~~~~Gf~~~Ki-------k~g~~~~~~-~~~~~d~~~v~~ir~~~---g~~~~l 192 (357)
T cd03316 126 RVRVYAS--GGGYDDSPEELAEEAKRAVAEGFTAVKL-------KVGGPDSGG-EDLREDLARVRAVREAV---GPDVDL 192 (357)
T ss_pred ceeeEEe--cCCCCCCHHHHHHHHHHHHHcCCCEEEE-------cCCCCCcch-HHHHHHHHHHHHHHHhh---CCCCEE
Confidence 3565442 3444 4677888888999999999999 244421000 01345577787777664 567766
Q ss_pred EEecchhhcccHHHHHHHHHHhHhcCCcEEEecCC---CCHHHHHHHHHhCCCCcee
Q 012478 228 VARTDSRQALSLEESLRRSRAFADAGADVLFIDAL---ASKEEMKAFCEISPLVPKM 281 (462)
Q Consensus 228 iARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~~---~s~eei~~i~~~v~~vP~~ 281 (462)
.. |+-....+++|++-++++.+.|. .|+|-+ .+.+.++++.+..+ +|+.
T Consensus 193 ~v--DaN~~~~~~~a~~~~~~l~~~~i--~~iEqP~~~~~~~~~~~l~~~~~-ipi~ 244 (357)
T cd03316 193 MV--DANGRWDLAEAIRLARALEEYDL--FWFEEPVPPDDLEGLARLRQATS-VPIA 244 (357)
T ss_pred EE--ECCCCCCHHHHHHHHHHhCccCC--CeEcCCCCccCHHHHHHHHHhCC-CCEE
Confidence 44 77667789999999999988764 567654 24677888888765 5654
No 195
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=94.01 E-value=2.4 Score=39.59 Aligned_cols=132 Identities=23% Similarity=0.239 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHH
Q 012478 135 YGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAA 214 (462)
Q Consensus 135 l~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA 214 (462)
+.+++..+..+++..+.|++++- .++...+.|++|||+.+... +.+..
T Consensus 42 ~~~~~~~l~~~~~~~~~~l~i~~------------~~~la~~~g~~GvHl~~~~~-------------~~~~~------- 89 (196)
T TIGR00693 42 RLALAEKLQELCRRYGVPFIVND------------RVDLALALGADGVHLGQDDL-------------PASEA------- 89 (196)
T ss_pred HHHHHHHHHHHHHHhCCeEEEEC------------HHHHHHHcCCCEEecCcccC-------------CHHHH-------
Confidence 34455666667777789999853 13455678999999965421 11111
Q ss_pred HHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEecCC------------CCHHHHHHHHHhCCCCceee
Q 012478 215 VDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDAL------------ASKEEMKAFCEISPLVPKMA 282 (462)
Q Consensus 215 ~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~~------------~s~eei~~i~~~v~~vP~~~ 282 (462)
+...+.+ .+++.+ .+..+| +....++|||.|++..+ ...+.++++++..+.+|+.
T Consensus 90 ---r~~~~~~-~~ig~s----~h~~~e----~~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~- 156 (196)
T TIGR00693 90 ---RALLGPD-KIIGVS----THNLEE----LAEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSIDIPIV- 156 (196)
T ss_pred ---HHhcCCC-CEEEEe----CCCHHH----HHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEE-
Confidence 1111223 334433 223344 33455789999985211 1457888887765545533
Q ss_pred eeeecCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 012478 283 NMLEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (462)
Q Consensus 283 N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~ll~ 315 (462)
..||-++ -+..++.++|+.-|..+..++.
T Consensus 157 ---a~GGI~~-~~~~~~~~~G~~gva~~~~i~~ 185 (196)
T TIGR00693 157 ---AIGGITL-ENAAEVLAAGADGVAVVSAIMQ 185 (196)
T ss_pred ---EECCcCH-HHHHHHHHcCCCEEEEhHHhhC
Confidence 2345443 3567788899999988776654
No 196
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=94.01 E-value=3.7 Score=41.27 Aligned_cols=175 Identities=22% Similarity=0.238 Sum_probs=106.0
Q ss_pred HHHHHHhCCcEEEec-cHHHHhhhccCCCC------------CCCCHHHHHHHHHHHH-hhcCCcEEEeCCCCCCCHH--
Q 012478 102 AKLVEKSGFSFCFTS-GFSISAARLALPDT------------GFISYGEMVDQGQLIT-QAVSIPVIGDGDNGYGNAM-- 165 (462)
Q Consensus 102 Arl~e~aGfdaI~vS-G~avSas~lG~PD~------------g~vsl~Eml~~~~~I~-ra~~iPVIaD~DtGyG~~~-- 165 (462)
++.+++.|+|.|=++ -+. -.+.|. .-+++++.++.++.++ +..++|+++- +|.|+.
T Consensus 32 ~~~l~~~Gad~iElGiPfS-----DP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm---~Y~N~i~~ 103 (258)
T PRK13111 32 IKALVEAGADIIELGIPFS-----DPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLM---TYYNPIFQ 103 (258)
T ss_pred HHHHHHCCCCEEEECCCCC-----CCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEE---ecccHHhh
Confidence 345667899998876 221 112221 2367888899999998 5567998854 687862
Q ss_pred -HHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEE-EEecchhhcccHHHHH
Q 012478 166 -NVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVI-VARTDSRQALSLEESL 243 (462)
Q Consensus 166 -nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vI-iARTDA~~~~gldeAI 243 (462)
.+.+.++++.++|++|+.|-|= |.||..+-+.++ ++.|-+.+. ++=|.. -
T Consensus 104 ~G~e~f~~~~~~aGvdGviipDL---------------p~ee~~~~~~~~----~~~gl~~I~lvap~t~---------~ 155 (258)
T PRK13111 104 YGVERFAADAAEAGVDGLIIPDL---------------PPEEAEELRAAA----KKHGLDLIFLVAPTTT---------D 155 (258)
T ss_pred cCHHHHHHHHHHcCCcEEEECCC---------------CHHHHHHHHHHH----HHcCCcEEEEeCCCCC---------H
Confidence 4567789999999999999662 445544333333 333555554 443332 2
Q ss_pred HHHHHhHhcCCcEEEecCC-----------CCH-HHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcCCCEEeccc
Q 012478 244 RRSRAFADAGADVLFIDAL-----------ASK-EEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPL 311 (462)
Q Consensus 244 ~RakAy~eAGAD~Ifie~~-----------~s~-eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~ 311 (462)
+|.+.+.+..-+.|++-+. ... +.++++.+.. .+|+++ .+|-++| -...++.++ ..-|+.++
T Consensus 156 eri~~i~~~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~-~~pv~v---GfGI~~~-e~v~~~~~~-ADGviVGS 229 (258)
T PRK13111 156 ERLKKIASHASGFVYYVSRAGVTGARSADAADLAELVARLKAHT-DLPVAV---GFGISTP-EQAAAIAAV-ADGVIVGS 229 (258)
T ss_pred HHHHHHHHhCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcC-CCcEEE---EcccCCH-HHHHHHHHh-CCEEEEcH
Confidence 3778888888888876321 112 3444554433 356542 3322232 245666665 89999999
Q ss_pred hHHHHHH
Q 012478 312 SLIGVSV 318 (462)
Q Consensus 312 ~ll~aa~ 318 (462)
.+.+..-
T Consensus 230 aiv~~~~ 236 (258)
T PRK13111 230 ALVKIIE 236 (258)
T ss_pred HHHHHHH
Confidence 8776543
No 197
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=93.95 E-value=1.7 Score=44.73 Aligned_cols=154 Identities=16% Similarity=0.127 Sum_probs=84.7
Q ss_pred HHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCH-HHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHHhC
Q 012478 100 LSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISY-GEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAG 178 (462)
Q Consensus 100 lSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl-~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~AG 178 (462)
--|+.++++|+|++=+--.+. ..-|+...... +.+.+.++.+++.+++||++=+--.+. ++...++.++++|
T Consensus 116 ~~a~~~~~~gad~iElN~s~~----~~~~~~~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p~~~---~~~~~a~~l~~~G 188 (325)
T cd04739 116 DYARQIEEAGADALELNIYAL----PTDPDISGAEVEQRYLDILRAVKSAVTIPVAVKLSPFFS---ALAHMAKQLDAAG 188 (325)
T ss_pred HHHHHHHhcCCCEEEEeCCCC----CCCCCcccchHHHHHHHHHHHHHhccCCCEEEEcCCCcc---CHHHHHHHHHHcC
Confidence 346777888999887652111 01122211222 334567788888889999998753333 5677778889999
Q ss_pred ccEEEeCCCCC-C---------CCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHH
Q 012478 179 FAGIILEDQVS-P---------KGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRA 248 (462)
Q Consensus 179 aaGI~IEDq~~-P---------KrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakA 248 (462)
|+||.+-.... + ..-+-..|..+.|.. .+-|+.+. +. .++-|+|=..-. .-++ +..
T Consensus 189 adgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~a--l~~v~~v~---~~--~~ipIig~GGI~---s~~D----a~e 254 (325)
T cd04739 189 ADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLP--LRWIAILS---GR--VKASLAASGGVH---DAED----VVK 254 (325)
T ss_pred CCeEEEEcCcCCCCccccccceecCCCcCCccchhHH--HHHHHHHH---cc--cCCCEEEECCCC---CHHH----HHH
Confidence 99999977641 1 001223344444432 22232222 21 245556543322 2343 444
Q ss_pred hHhcCCcEEEecCC---CCHHHHHHHHHh
Q 012478 249 FADAGADVLFIDAL---ASKEEMKAFCEI 274 (462)
Q Consensus 249 y~eAGAD~Ifie~~---~s~eei~~i~~~ 274 (462)
+..+|||+|.+-.. ...+.+.++.+.
T Consensus 255 ~l~aGA~~Vqv~ta~~~~gp~~~~~i~~~ 283 (325)
T cd04739 255 YLLAGADVVMTTSALLRHGPDYIGTLLAG 283 (325)
T ss_pred HHHcCCCeeEEehhhhhcCchHHHHHHHH
Confidence 55699999987421 123455555544
No 198
>TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein.
Probab=93.95 E-value=4.2 Score=39.18 Aligned_cols=147 Identities=18% Similarity=0.150 Sum_probs=90.3
Q ss_pred HHHHHHhhcCCcEEEeCCCCCCCH-HHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHH
Q 012478 141 QGQLITQAVSIPVIGDGDNGYGNA-MNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARK 219 (462)
Q Consensus 141 ~~~~I~ra~~iPVIaD~DtGyG~~-~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~ 219 (462)
.++.+.+. ..+|++|.=.+ +. ..+.+.++.+.++||+.+.+--.. | .+.|++++++.+
T Consensus 41 ~v~~l~~~-~~~v~lD~K~~--Dig~t~~~~~~~~~~~gad~vTvh~~~---------g---------~~~l~~~~~~~~ 99 (213)
T TIGR01740 41 IIDELAKL-NKLIFLDLKFA--DIPNTVKLQYESKIKQGADMVNVHGVA---------G---------SESVEAAKEAAS 99 (213)
T ss_pred HHHHHHHc-CCCEEEEEeec--chHHHHHHHHHHHHhcCCCEEEEcCCC---------C---------HHHHHHHHHHhh
Confidence 34444443 35899998664 32 345566777889999999984321 1 223555665554
Q ss_pred hhCCCeEEEEecchhhc----ccH-HHHHHHHHHhHhcCCcEEEecCCCCHHHHHHHHHhCCCCceeeeeeecC---CCC
Q 012478 220 ESGSDIVIVARTDSRQA----LSL-EESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGG---GKT 291 (462)
Q Consensus 220 ~~g~d~vIiARTDA~~~----~gl-deAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~l~~~---g~t 291 (462)
+.|+..++++.+-.... ..+ +..+++++.+.++|.+.++ .+.+++..+.+..+. +.-+++|= |..
T Consensus 100 ~~~~~v~~v~~lss~~~~~~~~~~~~~v~~~a~~~~~~g~~g~v----~~~~~~~~ir~~~~~---~~~vtPGI~~~g~~ 172 (213)
T TIGR01740 100 EGGRGLLAVTELTSMGSLDYGEDTMEKVLEYAKEAKAFGLDGPV----CSAEEAKEIRKFTGD---FLILTPGIRLQSKG 172 (213)
T ss_pred cCCCeEEEEEcCCCCChhhhCcCHHHHHHHHHHHhhhcCCeEEE----eCHHHHHHHHHhcCC---ceEEeCCcCCCCCC
Confidence 44566777776544321 223 6788899999999999875 345677776665431 11222210 100
Q ss_pred C-----CCCHHHHHhcCCCEEeccchHHH
Q 012478 292 P-----ILNPLELEELGFKLVAYPLSLIG 315 (462)
Q Consensus 292 P-----~ls~~eL~~lGv~~V~yp~~ll~ 315 (462)
+ ..+++++.+.|+..++.|..++.
T Consensus 173 ~~dq~~~~~~~~~~~~Gad~iVvGr~I~~ 201 (213)
T TIGR01740 173 ADDQQRVVTLEDAKEAGADVIIVGRGIYA 201 (213)
T ss_pred cCCccccCCHHHHHHcCCCEEEEChhhcC
Confidence 1 23568999999999998876664
No 199
>PRK00208 thiG thiazole synthase; Reviewed
Probab=93.92 E-value=2.7 Score=42.44 Aligned_cols=129 Identities=22% Similarity=0.219 Sum_probs=84.2
Q ss_pred CCCCHHHHHHHHHHHHH-hCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEE-Eecchhhcc
Q 012478 160 GYGNAMNVKRTVKGYIK-AGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIV-ARTDSRQAL 237 (462)
Q Consensus 160 GyG~~~nv~rtVk~l~~-AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIi-ARTDA~~~~ 237 (462)
|--++..+.++.+...+ .|-.=||||=-. +.+-+.| +..+.|+|+..-.+ .+|.++ -=+|.
T Consensus 71 G~~ta~eAv~~a~lare~~~~~~iKlEVi~--------d~~~llp--d~~~tv~aa~~L~~---~Gf~vlpyc~~d---- 133 (250)
T PRK00208 71 GCRTAEEAVRTARLAREALGTNWIKLEVIG--------DDKTLLP--DPIETLKAAEILVK---EGFVVLPYCTDD---- 133 (250)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCeEEEEEec--------CCCCCCc--CHHHHHHHHHHHHH---CCCEEEEEeCCC----
Confidence 43366677777666665 466888888532 2223333 44667777766654 478887 44444
Q ss_pred cHHHHHHHHHHhHhcCCcEEEec--------CCCCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcCCCEEec
Q 012478 238 SLEESLRRSRAFADAGADVLFID--------ALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAY 309 (462)
Q Consensus 238 gldeAI~RakAy~eAGAD~Ifie--------~~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~y 309 (462)
+.-|++++++|+|+|.+. ++.+.+.++.+.+.. .+|+++ +++=.+| -...+..++|+.-|..
T Consensus 134 -----~~~ak~l~~~G~~~vmPlg~pIGsg~gi~~~~~i~~i~e~~-~vpVIv---eaGI~tp-eda~~AmelGAdgVlV 203 (250)
T PRK00208 134 -----PVLAKRLEEAGCAAVMPLGAPIGSGLGLLNPYNLRIIIEQA-DVPVIV---DAGIGTP-SDAAQAMELGADAVLL 203 (250)
T ss_pred -----HHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHHHhc-CCeEEE---eCCCCCH-HHHHHHHHcCCCEEEE
Confidence 446999999999999762 345688888888874 466543 3322333 2456678899999999
Q ss_pred cchHHH
Q 012478 310 PLSLIG 315 (462)
Q Consensus 310 p~~ll~ 315 (462)
+....+
T Consensus 204 ~SAItk 209 (250)
T PRK00208 204 NTAIAV 209 (250)
T ss_pred ChHhhC
Confidence 887665
No 200
>PRK06852 aldolase; Validated
Probab=93.90 E-value=4.5 Score=41.88 Aligned_cols=203 Identities=14% Similarity=0.048 Sum_probs=118.8
Q ss_pred ecccCChH-HHHHHHHhCCcEEEec-cHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCC---CC----C
Q 012478 93 GPACFDAL-SAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNG---YG----N 163 (462)
Q Consensus 93 ~p~ayDal-SArl~e~aGfdaI~vS-G~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtG---yG----~ 163 (462)
++|.+|.- .-+.+.++|++++.+. |..- ...++. .++|+|+-.+.+ +. +
T Consensus 55 ~~gl~dp~~~i~~~~~~g~dav~~~~G~l~----~~~~~~------------------~~~~lIlkl~~~t~l~~~~~~~ 112 (304)
T PRK06852 55 AKDDADPEHLFRIASKAKIGVFATQLGLIA----RYGMDY------------------PDVPYLVKLNSKTNLVKTSQRD 112 (304)
T ss_pred CcccCCHHHHHHHHHhcCCCEEEeCHHHHH----hhcccc------------------CCCcEEEEECCCCCcCCcccCC
Confidence 34667776 4467777899999988 4331 112221 247777776664 22 2
Q ss_pred HH-HHHHHHHHHHHhC------ccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEE--EEecchh
Q 012478 164 AM-NVKRTVKGYIKAG------FAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVI--VARTDSR 234 (462)
Q Consensus 164 ~~-nv~rtVk~l~~AG------aaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vI--iARTDA~ 234 (462)
+. .+.-.|+..++.| |+||.+-=-. | +. ...++++.+..+++.+++.|-.+++ ..|-...
T Consensus 113 p~~~l~~sVeeAvrlG~~~~~~AdAV~v~v~~-----G---s~---~E~~ml~~l~~v~~ea~~~GlPll~~~yprG~~i 181 (304)
T PRK06852 113 PLSRQLLDVEQVVEFKENSGLNILGVGYTIYL-----G---SE---YESEMLSEAAQIIYEAHKHGLIAVLWIYPRGKAV 181 (304)
T ss_pred ccccceecHHHHHhcCCccCCCceEEEEEEec-----C---CH---HHHHHHHHHHHHHHHHHHhCCcEEEEeeccCccc
Confidence 22 3444588888888 5566552111 1 10 1256888888888888887766654 3554332
Q ss_pred hc-ccHHHHHHHHHHhHhcCCcEEEecCC-----CCHHHHHHHHHhCCCCceeeeeeecCCCCCCC---C-HHHH-HhcC
Q 012478 235 QA-LSLEESLRRSRAFADAGADVLFIDAL-----ASKEEMKAFCEISPLVPKMANMLEGGGKTPIL---N-PLEL-EELG 303 (462)
Q Consensus 235 ~~-~gldeAI~RakAy~eAGAD~Ifie~~-----~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~l---s-~~eL-~~lG 303 (462)
.. .+.+-.---++..+|.|||.|=+.-+ .+.+.++++++....+|++ +.||.++... . ..+. ++.|
T Consensus 182 ~~~~~~~~ia~aaRiaaELGADIVKv~y~~~~~~g~~e~f~~vv~~~g~vpVv---iaGG~k~~~~e~L~~v~~ai~~aG 258 (304)
T PRK06852 182 KDEKDPHLIAGAAGVAACLGADFVKVNYPKKEGANPAELFKEAVLAAGRTKVV---CAGGSSTDPEEFLKQLYEQIHISG 258 (304)
T ss_pred CCCccHHHHHHHHHHHHHHcCCEEEecCCCcCCCCCHHHHHHHHHhCCCCcEE---EeCCCCCCHHHHHHHHHHHHHHcC
Confidence 21 12222233357778999999998776 5678899998876225543 3554454211 0 1222 3378
Q ss_pred CCEEeccchHHHHHH---HHHHHHHHHHHcC
Q 012478 304 FKLVAYPLSLIGVSV---RAMQDALTAIKGG 331 (462)
Q Consensus 304 v~~V~yp~~ll~aa~---~Am~~~l~~l~~g 331 (462)
.+=+++|-..+..-. .+|-+++.+|-.+
T Consensus 259 a~Gv~~GRNIfQ~~~p~~~~~~~Ai~~IVH~ 289 (304)
T PRK06852 259 ASGNATGRNIHQKPLDEAVRMCNAIYAITVE 289 (304)
T ss_pred CceeeechhhhcCCCchHHHHHHHHHHHHhC
Confidence 888888777665521 4455666666543
No 201
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=93.84 E-value=0.96 Score=44.56 Aligned_cols=97 Identities=14% Similarity=0.252 Sum_probs=61.7
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHH
Q 012478 134 SYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKA 213 (462)
Q Consensus 134 sl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~A 213 (462)
..+.+.+.++.|.+ .++||.+=+-.|+- .+..+.++.++++|+++||+. +..+ | ..++. +.|+.
T Consensus 124 ~p~~l~eiv~avr~-~~~pVsvKir~g~~--~~~~~la~~l~~aG~d~ihv~-~~~~---g-----~~ad~----~~I~~ 187 (233)
T cd02911 124 DPERLSEFIKALKE-TGVPVSVKIRAGVD--VDDEELARLIEKAGADIIHVD-AMDP---G-----NHADL----KKIRD 187 (233)
T ss_pred CHHHHHHHHHHHHh-cCCCEEEEEcCCcC--cCHHHHHHHHHHhCCCEEEEC-cCCC---C-----CCCcH----HHHHH
Confidence 34566666777765 58999999998874 456677889999999999994 3221 1 01222 23333
Q ss_pred HHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEec
Q 012478 214 AVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFID 260 (462)
Q Consensus 214 A~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie 260 (462)
++ .++-|++--|-.. .+.++.+.+.|||+|++-
T Consensus 188 i~-------~~ipVIgnGgI~s-------~eda~~~l~~GaD~VmiG 220 (233)
T cd02911 188 IS-------TELFIIGNNSVTT-------IESAKEMFSYGADMVSVA 220 (233)
T ss_pred hc-------CCCEEEEECCcCC-------HHHHHHHHHcCCCEEEEc
Confidence 22 2355665544322 335666777899999983
No 202
>cd03315 MLE_like Muconate lactonizing enzyme (MLE) like subgroup of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and residues that can function as general acid/base catalysts, a Lys-X-Lys motif and another conserved lysine. Despite these conserved residues, the members of the MLE subgroup, like muconate lactonizing enzyme, o-succinylbenzoate synthase (OSBS) and N-acylamino acid racemase (NAAAR), catalyze different reactions.
Probab=93.81 E-value=4.4 Score=39.92 Aligned_cols=133 Identities=23% Similarity=0.327 Sum_probs=87.6
Q ss_pred CcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEe
Q 012478 151 IPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVAR 230 (462)
Q Consensus 151 iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiAR 230 (462)
+|+-+= .|++++....+.++++.+.|..++||- +|. +.++-+++|++++++. |+++.+ |
T Consensus 75 i~~~~~--~~~~~~~~~~~~~~~~~~~G~~~~KiK-------vg~-------~~~~d~~~v~~vr~~~---g~~~~l--~ 133 (265)
T cd03315 75 VRVAHM--LGLGEPAEVAEEARRALEAGFRTFKLK-------VGR-------DPARDVAVVAALREAV---GDDAEL--R 133 (265)
T ss_pred eEEEEE--ecCCCHHHHHHHHHHHHHCCCCEEEEe-------cCC-------CHHHHHHHHHHHHHhc---CCCCEE--E
Confidence 555432 244567777788888889999999993 232 1255678888887664 556655 7
Q ss_pred cchhhcccHHHHHHHHHHhHhcCCcEEEecCC---CCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHH---hc-C
Q 012478 231 TDSRQALSLEESLRRSRAFADAGADVLFIDAL---ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELE---EL-G 303 (462)
Q Consensus 231 TDA~~~~gldeAI~RakAy~eAGAD~Ifie~~---~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~---~l-G 303 (462)
-|+.....+++|++-++++.+.|.+. +|-+ .+.+.++++.+.++ +|+..+ +. ..+..++. +. +
T Consensus 134 vDan~~~~~~~a~~~~~~l~~~~i~~--iEeP~~~~d~~~~~~l~~~~~-ipia~d-----E~--~~~~~~~~~~i~~~~ 203 (265)
T cd03315 134 VDANRGWTPKQAIRALRALEDLGLDY--VEQPLPADDLEGRAALARATD-TPIMAD-----ES--AFTPHDAFRELALGA 203 (265)
T ss_pred EeCCCCcCHHHHHHHHHHHHhcCCCE--EECCCCcccHHHHHHHHhhCC-CCEEEC-----CC--CCCHHHHHHHHHhCC
Confidence 78877778999999999999987654 4543 34678888888765 565532 21 23444443 33 4
Q ss_pred CCEEeccchHH
Q 012478 304 FKLVAYPLSLI 314 (462)
Q Consensus 304 v~~V~yp~~ll 314 (462)
++.|..=....
T Consensus 204 ~d~v~~k~~~~ 214 (265)
T cd03315 204 ADAVNIKTAKT 214 (265)
T ss_pred CCEEEEecccc
Confidence 77776654433
No 203
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=93.80 E-value=4.7 Score=42.51 Aligned_cols=145 Identities=19% Similarity=0.197 Sum_probs=88.6
Q ss_pred ccCChH-HHHHHHHhCCcEEEec-cHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCC----CCCH--HH
Q 012478 95 ACFDAL-SAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNG----YGNA--MN 166 (462)
Q Consensus 95 ~ayDal-SArl~e~aGfdaI~vS-G~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtG----yG~~--~n 166 (462)
|.+|.- .-+++.++|++++.+. |..- .+.++. ..++|+|+-.+.+ +.++ ..
T Consensus 89 gl~dp~~~i~~a~~~g~dAv~~~~G~l~----~~~~~~-----------------~~~iplIlkln~~t~l~~~~~~~~~ 147 (348)
T PRK09250 89 LYFDPENIVKLAIEAGCNAVASTLGVLE----AVARKY-----------------AHKIPFILKLNHNELLSYPNTYDQA 147 (348)
T ss_pred cccCHHHHHHHHHhcCCCEEEeCHHHHH----hccccc-----------------cCCCCEEEEeCCCCCCCCCCCCccc
Confidence 455655 3366667899999888 4321 122221 1257788777765 3332 34
Q ss_pred HHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEE--Eecchhhccc-----H
Q 012478 167 VKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIV--ARTDSRQALS-----L 239 (462)
Q Consensus 167 v~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIi--ARTDA~~~~g-----l 239 (462)
+.-.|+...+.||+||.+-=-. | +. ...++++.+.++.+.+++.|-.+++. .|-....... .
T Consensus 148 l~~sVedAlrLGAdAV~~tvy~-----G---s~---~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~ 216 (348)
T PRK09250 148 LTASVEDALRLGAVAVGATIYF-----G---SE---ESRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAA 216 (348)
T ss_pred ceecHHHHHHCCCCEEEEEEec-----C---CH---HHHHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCcccccccH
Confidence 5566889999999999773221 1 10 12568888888888888877665552 3433222111 2
Q ss_pred HHHHHHHHHhHhcCCcEEEecCCCCHHHHHHH
Q 012478 240 EESLRRSRAFADAGADVLFIDALASKEEMKAF 271 (462)
Q Consensus 240 deAI~RakAy~eAGAD~Ifie~~~s~eei~~i 271 (462)
+-.---++..+|.|||.|=+.-+.+.+.+.++
T Consensus 217 d~Ia~AaRiaaELGADIVKv~yp~~~~~f~~v 248 (348)
T PRK09250 217 DLTGQANHLAATIGADIIKQKLPTNNGGYKAI 248 (348)
T ss_pred HHHHHHHHHHHHHcCCEEEecCCCChhhHHHh
Confidence 32333366677999999998877666666665
No 204
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=93.75 E-value=0.35 Score=50.60 Aligned_cols=91 Identities=14% Similarity=0.033 Sum_probs=59.8
Q ss_pred CCceEecc-cCChHHHHHHHHhCCcEEEec-cHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHH
Q 012478 88 PGVHQGPA-CFDALSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAM 165 (462)
Q Consensus 88 ~~~iv~p~-ayDalSArl~e~aGfdaI~vS-G~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~ 165 (462)
+++.++-| +-++-.|+.+.++|+|+|.+| |-+-.+. --.-|...++.-+.+..+...++..++|||+|.---+++
T Consensus 149 p~~~viaGNV~T~e~a~~Li~aGAD~ikVgiGpGSict-tR~~~Gvg~pqltAv~~~a~aa~~~~v~VIaDGGIr~~g-- 225 (343)
T TIGR01305 149 PEHTIMAGNVVTGEMVEELILSGADIVKVGIGPGSVCT-TRTKTGVGYPQLSAVIECADAAHGLKGHIISDGGCTCPG-- 225 (343)
T ss_pred CCCeEEEecccCHHHHHHHHHcCCCEEEEcccCCCccc-CceeCCCCcCHHHHHHHHHHHhccCCCeEEEcCCcCchh--
Confidence 44555555 999999999999999999999 5442221 112333334544555555565666689999995443332
Q ss_pred HHHHHHHHHHHhCccEEEeC
Q 012478 166 NVKRTVKGYIKAGFAGIILE 185 (462)
Q Consensus 166 nv~rtVk~l~~AGaaGI~IE 185 (462)
++. |.+ .+||++|.|-
T Consensus 226 DI~---KAL-A~GAd~VMlG 241 (343)
T TIGR01305 226 DVA---KAF-GAGADFVMLG 241 (343)
T ss_pred HHH---HHH-HcCCCEEEEC
Confidence 343 343 4899999994
No 205
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=93.73 E-value=2.9 Score=40.94 Aligned_cols=130 Identities=15% Similarity=0.226 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHH
Q 012478 136 GEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAV 215 (462)
Q Consensus 136 ~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~ 215 (462)
.++...++.+++..++|+|++-+ +....+.|++||||-... .+..
T Consensus 57 ~~~a~~l~~l~~~~gv~liINd~------------~dlA~~~~adGVHLg~~d-------------~~~~---------- 101 (221)
T PRK06512 57 QKQAEKLVPVIQEAGAAALIAGD------------SRIAGRVKADGLHIEGNL-------------AALA---------- 101 (221)
T ss_pred HHHHHHHHHHHHHhCCEEEEeCH------------HHHHHHhCCCEEEECccc-------------cCHH----------
Confidence 34455566667777899999821 334456899999995321 1111
Q ss_pred HHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEecCC----------CCHHHHHHHHHhCCCCceeeeee
Q 012478 216 DARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDAL----------ASKEEMKAFCEISPLVPKMANML 285 (462)
Q Consensus 216 ~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~~----------~s~eei~~i~~~v~~vP~~~N~l 285 (462)
++++.++++ .+++-+-. +..+++.+ ..+.|||.|.+-.+ ...+.++++++.+. +|+. .+
T Consensus 102 ~~r~~~~~~-~iiG~s~~---~s~~~a~~----A~~~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~~-iPvv--AI 170 (221)
T PRK06512 102 EAIEKHAPK-MIVGFGNL---RDRHGAME----IGELRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMIE-IPCI--VQ 170 (221)
T ss_pred HHHHhcCCC-CEEEecCC---CCHHHHHH----hhhcCCCEEEECCCCCCCCCCCCCCChHHHHHHHHhCC-CCEE--EE
Confidence 222223444 45665411 12233322 45799999987433 12456777777654 5643 22
Q ss_pred ecCCCCCCCCHHHHHhcCCCEEeccchHH
Q 012478 286 EGGGKTPILNPLELEELGFKLVAYPLSLI 314 (462)
Q Consensus 286 ~~~g~tP~ls~~eL~~lGv~~V~yp~~ll 314 (462)
||-++ -...++.+.|...|..-..++
T Consensus 171 --GGI~~-~n~~~~~~~GA~giAvisai~ 196 (221)
T PRK06512 171 --AGSDL-ASAVEVAETGAEFVALERAVF 196 (221)
T ss_pred --eCCCH-HHHHHHHHhCCCEEEEhHHhh
Confidence 34332 245778899988887655554
No 206
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=93.70 E-value=0.68 Score=55.68 Aligned_cols=128 Identities=22% Similarity=0.328 Sum_probs=89.6
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEeCCCC-------CC-CHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHH
Q 012478 134 SYGEMVDQGQLITQAVSIPVIGDGDNG-------YG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSRE 205 (462)
Q Consensus 134 sl~Eml~~~~~I~ra~~iPVIaD~DtG-------yG-~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~e 205 (462)
..++|..+++.+.+.++.||++=...| |- ++....+.++++.+.|. ++|=++ .||-++
T Consensus 253 GP~~m~~~l~~l~~~~~~pi~vyPNAGlP~~~~~yd~tPe~~a~~~~~~~~~G~--v~IIGG----CCGTtP-------- 318 (1229)
T PRK09490 253 GADELRPYVEELSRIADTYVSAHPNAGLPNAFGEYDETPEEMAAQIGEFAESGF--LNIVGG----CCGTTP-------- 318 (1229)
T ss_pred cHHHHHHHHHHHHHhcCCeEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHcCC--CCEEEe----cCCCCH--------
Confidence 467899999999888889998655555 33 57778888999998774 455577 488643
Q ss_pred HHHHHHHHHHHHHH---------------------hhCCCeEEEE-ecchhh---------cccHHHHHHHHHHhHhcCC
Q 012478 206 EAVMRIKAAVDARK---------------------ESGSDIVIVA-RTDSRQ---------ALSLEESLRRSRAFADAGA 254 (462)
Q Consensus 206 e~~~kI~AA~~Ar~---------------------~~g~d~vIiA-RTDA~~---------~~gldeAI~RakAy~eAGA 254 (462)
++++.|+.+++... ..+..|++|+ |+...+ ..++++++++|+...++||
T Consensus 319 eHI~ala~~l~~~~p~~~~~~~~~~~~S~~~~~~~~~~~~~~~IGER~N~~G~k~~~~~i~~~d~~~al~~A~~qve~GA 398 (1229)
T PRK09490 319 EHIAAIAEAVAGLPPRKLPEIPVACRLSGLEPLNIDDDSLFVNVGERTNVTGSAKFARLIKEEDYDEALDVARQQVENGA 398 (1229)
T ss_pred HHHHHHHHHHhcCCCCCCCCcCcceeeecceEEeecCCCcccccccccchhccHHHHHHHHcCCHHHHHHHHHHHHHCCC
Confidence 56666666554211 0012377777 777642 3578999999999999999
Q ss_pred cEEEecC----CCCHHHHHHHHHhC
Q 012478 255 DVLFIDA----LASKEEMKAFCEIS 275 (462)
Q Consensus 255 D~Ifie~----~~s~eei~~i~~~v 275 (462)
|+|=|-. +...++++++...+
T Consensus 399 ~iIDVn~g~~~id~~eem~rvv~~i 423 (1229)
T PRK09490 399 QIIDINMDEGMLDSEAAMVRFLNLI 423 (1229)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHH
Confidence 9986632 34567888887543
No 207
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=93.70 E-value=1.9 Score=45.66 Aligned_cols=135 Identities=21% Similarity=0.227 Sum_probs=71.8
Q ss_pred HHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHHhCc
Q 012478 100 LSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGF 179 (462)
Q Consensus 100 lSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~AGa 179 (462)
--+++++++|.|++.+.|--.+. .+...+ -.+.++.+. .+..++|||+ .+-.+ .+.++++.++||
T Consensus 146 e~a~~l~eAGad~I~ihgrt~~q-~~~sg~---~~p~~l~~~----i~~~~IPVI~---G~V~t----~e~A~~~~~aGa 210 (369)
T TIGR01304 146 EIAPIVVKAGADLLVIQGTLVSA-EHVSTS---GEPLNLKEF----IGELDVPVIA---GGVND----YTTALHLMRTGA 210 (369)
T ss_pred HHHHHHHHCCCCEEEEeccchhh-hccCCC---CCHHHHHHH----HHHCCCCEEE---eCCCC----HHHHHHHHHcCC
Confidence 45688899999999998644432 121111 124444333 3345899998 11123 333456667999
Q ss_pred cEEEeCCCCCCCCCCCCCCCcc---cCHHHHHHHHHHHHHH-HHhhCC-CeEEEEecchhhcccHHHHHHHHHHhHhcCC
Q 012478 180 AGIILEDQVSPKGCGHTRGRKV---VSREEAVMRIKAAVDA-RKESGS-DIVIVARTDSRQALSLEESLRRSRAFADAGA 254 (462)
Q Consensus 180 aGI~IEDq~~PKrCGH~~gk~L---vp~ee~~~kI~AA~~A-r~~~g~-d~vIiARTDA~~~~gldeAI~RakAy~eAGA 254 (462)
++|.+=-. .+|.....+ +|+.+.+..+.++++- .++.+. ..-|||=--- ..+ - ...+...+||
T Consensus 211 DgV~~G~g-----g~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI--~tg----~-di~kAlAlGA 278 (369)
T TIGR01304 211 AGVIVGPG-----GANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGI--ETS----G-DLVKAIACGA 278 (369)
T ss_pred CEEEECCC-----CCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCC--CCH----H-HHHHHHHcCC
Confidence 99983211 133332223 6766666666555432 223332 3555543211 112 1 2333445899
Q ss_pred cEEEecC
Q 012478 255 DVLFIDA 261 (462)
Q Consensus 255 D~Ifie~ 261 (462)
|++++-.
T Consensus 279 daV~iGt 285 (369)
T TIGR01304 279 DAVVLGS 285 (369)
T ss_pred CEeeeHH
Confidence 9999843
No 208
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=93.66 E-value=2.5 Score=43.95 Aligned_cols=155 Identities=26% Similarity=0.323 Sum_probs=85.4
Q ss_pred HHHHHHHHHHhCccEEEeCCCC-----------CCCCCCCCCCCcccCHHHH-HHHHHHHHHHHH-hhCCCeEEEEecch
Q 012478 167 VKRTVKGYIKAGFAGIILEDQV-----------SPKGCGHTRGRKVVSREEA-VMRIKAAVDARK-ESGSDIVIVARTDS 233 (462)
Q Consensus 167 v~rtVk~l~~AGaaGI~IEDq~-----------~PKrCGH~~gk~Lvp~ee~-~~kI~AA~~Ar~-~~g~d~vIiARTDA 233 (462)
..+.+++..++|++||.|--.- ..||...-+|- +-..-.+ .+-|++++++.. .++++|.|--|-..
T Consensus 146 f~~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGs-lenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~ 224 (353)
T cd04735 146 FGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGS-LENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSP 224 (353)
T ss_pred HHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCc-HHHHHHHHHHHHHHHHHHhccccCCCceEEEEECc
Confidence 3455677778999999886421 23444433342 2222222 223333333321 01168888888654
Q ss_pred h----hcccHHHHHHHHHHhHhcCCcEEEecCC---------C--CHHHHHHHHHhCC-CCceeeeeeecCCC-CCCCCH
Q 012478 234 R----QALSLEESLRRSRAFADAGADVLFIDAL---------A--SKEEMKAFCEISP-LVPKMANMLEGGGK-TPILNP 296 (462)
Q Consensus 234 ~----~~~gldeAI~RakAy~eAGAD~Ifie~~---------~--s~eei~~i~~~v~-~vP~~~N~l~~~g~-tP~ls~ 296 (462)
. ....++|.++-++.+.++|+|.|=+.+- . ..+.++.+.+.+. .+|+++| |+- +|. ..
T Consensus 225 ~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~----Ggi~t~e-~a 299 (353)
T cd04735 225 EEPEEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAV----GSINTPD-DA 299 (353)
T ss_pred ccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEE----CCCCCHH-HH
Confidence 2 1235789999999999999999977431 0 1234455555552 3566543 232 232 23
Q ss_pred HHHHhcCCCEEeccchHHHHHHHHHHHHHHHHHcCC
Q 012478 297 LELEELGFKLVAYPLSLIGVSVRAMQDALTAIKGGR 332 (462)
Q Consensus 297 ~eL~~lGv~~V~yp~~ll~aa~~Am~~~l~~l~~g~ 332 (462)
+++-+.|+..|.++-.++.- -+....+++|.
T Consensus 300 e~~l~~gaD~V~~gR~liad-----Pdl~~k~~~G~ 330 (353)
T cd04735 300 LEALETGADLVAIGRGLLVD-----PDWVEKIKEGR 330 (353)
T ss_pred HHHHHcCCChHHHhHHHHhC-----ccHHHHHHcCC
Confidence 44444488877665544332 35556666664
No 209
>PRK07695 transcriptional regulator TenI; Provisional
Probab=93.63 E-value=5.3 Score=37.84 Aligned_cols=132 Identities=18% Similarity=0.170 Sum_probs=79.6
Q ss_pred CCHHHHHHHHHHHHhhc--CCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHH
Q 012478 133 ISYGEMVDQGQLITQAV--SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMR 210 (462)
Q Consensus 133 vsl~Eml~~~~~I~ra~--~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~k 210 (462)
.+.+++...++.+.+.. ..++++.-+ +....+.|++|+|+.... .+.++
T Consensus 38 ~~~~~~~~~~~~l~~~~~~~~~liin~~------------~~la~~~~~~gvHl~~~~-------------~~~~~---- 88 (201)
T PRK07695 38 KSAKELYEGVESLLKKGVPASKLIINDR------------VDIALLLNIHRVQLGYRS-------------FSVRS---- 88 (201)
T ss_pred CCHHHHHHHHHHHHHhCCCCCeEEEECH------------HHHHHHcCCCEEEeCccc-------------CCHHH----
Confidence 67778888888776542 245777632 234456799999995431 11111
Q ss_pred HHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEecCC-----------CCHHHHHHHHHhCCCCc
Q 012478 211 IKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDAL-----------ASKEEMKAFCEISPLVP 279 (462)
Q Consensus 211 I~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~~-----------~s~eei~~i~~~v~~vP 279 (462)
+ ++.. ++..|-+.+. ..+ .++...++|||.|++..+ ...+.++++.+.++ +|
T Consensus 89 ---~---r~~~-~~~~ig~s~~-----s~e----~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~~-ip 151 (201)
T PRK07695 89 ---V---REKF-PYLHVGYSVH-----SLE----EAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDIARALS-IP 151 (201)
T ss_pred ---H---HHhC-CCCEEEEeCC-----CHH----HHHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhCC-CC
Confidence 1 1112 3555555332 233 466677899999986421 23467777777654 55
Q ss_pred eeeeeeecCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 012478 280 KMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (462)
Q Consensus 280 ~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~ll~ 315 (462)
+.+ .||-+| -+..++.+.|+..|..+..++.
T Consensus 152 via----~GGI~~-~~~~~~~~~Ga~gvav~s~i~~ 182 (201)
T PRK07695 152 VIA----IGGITP-ENTRDVLAAGVSGIAVMSGIFS 182 (201)
T ss_pred EEE----EcCCCH-HHHHHHHHcCCCEEEEEHHHhc
Confidence 542 235433 3578888999999988877764
No 210
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.61 E-value=4.6 Score=42.36 Aligned_cols=145 Identities=18% Similarity=0.171 Sum_probs=95.4
Q ss_pred ChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcC-CcEEEeCCCCCCCHHHHHHHHHHHHH
Q 012478 98 DALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVS-IPVIGDGDNGYGNAMNVKRTVKGYIK 176 (462)
Q Consensus 98 DalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~-iPVIaD~DtGyG~~~nv~rtVk~l~~ 176 (462)
+--..+.+-++|+|+||+|.-... ..+.+ ...+.+|+.+.++.....-. .-|.+-.=.==+....+.+.++.+.+
T Consensus 15 ~l~~l~~ai~~GADaVY~G~~~~~--~R~~a--~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~l~~l~e 90 (347)
T COG0826 15 NLEDLKAAIAAGADAVYIGEKEFG--LRRRA--LNFSVEDLAEAVELAHSAGKKVYVAVNTLLHNDELETLERYLDRLVE 90 (347)
T ss_pred CHHHHHHHHHcCCCEEEeCCcccc--ccccc--ccCCHHHHHHHHHHHHHcCCeEEEEeccccccchhhHHHHHHHHHHH
Confidence 334445666789999999965443 23444 56888887666665543322 22332221111233457889999999
Q ss_pred hCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcE
Q 012478 177 AGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADV 256 (462)
Q Consensus 177 AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~ 256 (462)
.|+++|.+-|=. -|..+ + +.+|++-|.+-|-+.... -+.++-|.+.|+.-
T Consensus 91 ~GvDaviv~Dpg---------------------~i~l~---~-e~~p~l~ih~S~q~~v~N-----~~~~~f~~~~G~~r 140 (347)
T COG0826 91 LGVDAVIVADPG---------------------LIMLA---R-ERGPDLPIHVSTQANVTN-----AETAKFWKELGAKR 140 (347)
T ss_pred cCCCEEEEcCHH---------------------HHHHH---H-HhCCCCcEEEeeeEecCC-----HHHHHHHHHcCCEE
Confidence 999999997731 11112 1 226888888877665422 23588899999888
Q ss_pred EEecCCCCHHHHHHHHHhCC
Q 012478 257 LFIDALASKEEMKAFCEISP 276 (462)
Q Consensus 257 Ifie~~~s~eei~~i~~~v~ 276 (462)
++++---+.++++++.+..|
T Consensus 141 vVl~rEls~~ei~~i~~~~~ 160 (347)
T COG0826 141 VVLPRELSLEEIKEIKEQTP 160 (347)
T ss_pred EEeCccCCHHHHHHHHHhCC
Confidence 88887788899999999875
No 211
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=93.60 E-value=1.6 Score=45.95 Aligned_cols=208 Identities=22% Similarity=0.210 Sum_probs=120.1
Q ss_pred chHHHHHHHHhCCCceEec--ccCChHHHHHHHHhCCcEEEeccHHHHhhhccC-CCC--CCCCHHHHHHHHHHHHhhcC
Q 012478 76 SPAKSLRQILELPGVHQGP--ACFDALSAKLVEKSGFSFCFTSGFSISAARLAL-PDT--GFISYGEMVDQGQLITQAVS 150 (462)
Q Consensus 76 ~~a~~LR~ll~~~~~iv~p--~ayDalSArl~e~aGfdaI~vSG~avSas~lG~-PD~--g~vsl~Eml~~~~~I~ra~~ 150 (462)
.+...|+.....+..+++| .-=+-..=+++...|.+.+|+== -.|.. +.. ++. ..++. ..-+
T Consensus 7 ~~~~~f~~~~~~~~ri~APMvd~S~l~fR~L~R~y~~~l~yTpM-i~a~~-fv~~ek~r~~~~st-----------~~~D 73 (358)
T KOG2335|consen 7 DPLAIFWSKQGRPKRIVAPMVDYSELAFRRLVRLYGADLLYTPM-IHAKT-FVHSEKYRDSELST-----------SPED 73 (358)
T ss_pred ChHHhhhhhcCCcccccCCcccccHHHHHHHHHHhCCceEechH-HHHHH-HhcCccchhhhccc-----------CCCC
Confidence 3445566555554445555 22233333555667888887541 11111 111 111 11111 1236
Q ss_pred CcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCC--CCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEE
Q 012478 151 IPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKG--CGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIV 228 (462)
Q Consensus 151 iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKr--CGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIi 228 (462)
-|+|+= +|-.++.+..++++....-+ +||.|.-+..+|. =||. |--|..--|.+..|--++.+. ++.+.-+-
T Consensus 74 ~PLIvQ--f~~ndp~~ll~Aa~lv~~y~-D~idlNcGCPq~~a~~g~y-Ga~L~~~~eLv~e~V~~v~~~--l~~pVs~K 147 (358)
T KOG2335|consen 74 RPLIVQ--FGGNDPENLLKAARLVQPYC-DGIDLNCGCPQKVAKRGGY-GAFLMDNPELVGEMVSAVRAN--LNVPVSVK 147 (358)
T ss_pred CceEEE--EcCCCHHHHHHHHHHhhhhc-CcccccCCCCHHHHhcCCc-cceeccCHHHHHHHHHHHHhh--cCCCeEEE
Confidence 999987 23225777777776665555 9999987754321 1333 334554445555554444443 34555555
Q ss_pred EecchhhcccHHHHHHHHHHhHhcCCcEEEecCC-----------CCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHH
Q 012478 229 ARTDSRQALSLEESLRRSRAFADAGADVLFIDAL-----------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPL 297 (462)
Q Consensus 229 ARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~~-----------~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~ 297 (462)
-|+- .++++.++-|+..++||++.+.|+|- -+-+.++.+.+.++.+|+++| |+ ..+.+
T Consensus 148 IRI~----~d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~ipviaN----Gn---I~~~~ 216 (358)
T KOG2335|consen 148 IRIF----VDLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVPDIPVIAN----GN---ILSLE 216 (358)
T ss_pred EEec----CcHHHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhCcCCcEEee----CC---cCcHH
Confidence 5543 57899999999999999999999974 245678888888887788877 23 23433
Q ss_pred H----HHhcCCCEEeccchH
Q 012478 298 E----LEELGFKLVAYPLSL 313 (462)
Q Consensus 298 e----L~~lGv~~V~yp~~l 313 (462)
| ++.-|+.-|-.+-.+
T Consensus 217 d~~~~~~~tG~dGVM~argl 236 (358)
T KOG2335|consen 217 DVERCLKYTGADGVMSARGL 236 (358)
T ss_pred HHHHHHHHhCCceEEecchh
Confidence 3 333677766554443
No 212
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=93.59 E-value=0.71 Score=47.88 Aligned_cols=141 Identities=16% Similarity=0.164 Sum_probs=79.8
Q ss_pred HHHHHHHhC--CcEEEec-cHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcC-----CcEEEeCCCCCCCHHHHHHHHH
Q 012478 101 SAKLVEKSG--FSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVS-----IPVIGDGDNGYGNAMNVKRTVK 172 (462)
Q Consensus 101 SArl~e~aG--fdaI~vS-G~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~-----iPVIaD~DtGyG~~~nv~rtVk 172 (462)
.++++++++ +|++-+- |.-.. -|..+ .-..+.+.+.+++|.+.++ +||++=+.-++ ...++.+.++
T Consensus 159 ~~~~~~~~~~~ad~lelN~scP~~---~g~~~--~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~-~~~~~~~ia~ 232 (344)
T PRK05286 159 YLICLEKLYPYADYFTVNISSPNT---PGLRD--LQYGEALDELLAALKEAQAELHGYVPLLVKIAPDL-SDEELDDIAD 232 (344)
T ss_pred HHHHHHHHHhhCCEEEEEccCCCC---CCccc--ccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCC-CHHHHHHHHH
Confidence 355666665 8887765 32211 12222 2233455566677777665 99999988653 3346788889
Q ss_pred HHHHhCccEEEeCCCCCC----------CCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHH
Q 012478 173 GYIKAGFAGIILEDQVSP----------KGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (462)
Q Consensus 173 ~l~~AGaaGI~IEDq~~P----------KrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeA 242 (462)
.++++||+||.+-..... ...|-..|.++.+.. .+-|+.+ ++..+.++-|++=..-. ..
T Consensus 233 ~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~--l~~v~~l---~~~~~~~ipIig~GGI~---s~--- 301 (344)
T PRK05286 233 LALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERS--TEVIRRL---YKELGGRLPIIGVGGID---SA--- 301 (344)
T ss_pred HHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHH--HHHHHHH---HHHhCCCCCEEEECCCC---CH---
Confidence 999999999999775421 012222344433332 2222222 22223356666644332 22
Q ss_pred HHHHHHhHhcCCcEEEe
Q 012478 243 LRRSRAFADAGADVLFI 259 (462)
Q Consensus 243 I~RakAy~eAGAD~Ifi 259 (462)
+.+..+.++|||+|.+
T Consensus 302 -eda~e~l~aGAd~V~v 317 (344)
T PRK05286 302 -EDAYEKIRAGASLVQI 317 (344)
T ss_pred -HHHHHHHHcCCCHHHH
Confidence 3466666799998876
No 213
>PRK14017 galactonate dehydratase; Provisional
Probab=93.58 E-value=2.1 Score=44.75 Aligned_cols=133 Identities=16% Similarity=0.244 Sum_probs=84.9
Q ss_pred CCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccH
Q 012478 160 GYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSL 239 (462)
Q Consensus 160 GyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gl 239 (462)
|.++++.+.+.++++.+.|...+||-- .+|.+- .++ -.+.++-+++|++++++. |+++.| |.|+-...++
T Consensus 121 ~~~~~~~~~~~a~~~~~~Gf~~~KiKv--~~~~~~-~~~--~~~~~~d~~~i~avr~~~---g~~~~l--~vDaN~~w~~ 190 (382)
T PRK14017 121 GGDRPADVAEAARARVERGFTAVKMNG--TEELQY-IDS--PRKVDAAVARVAAVREAV---GPEIGI--GVDFHGRVHK 190 (382)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEcC--cCCccc-ccc--HHHHHHHHHHHHHHHHHh---CCCCeE--EEECCCCCCH
Confidence 334677777888888889999999942 111100 000 012344577888877664 567765 6788777889
Q ss_pred HHHHHHHHHhHhcCCcEEEecCC---CCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHH---HhcC-CCEEeccch
Q 012478 240 EESLRRSRAFADAGADVLFIDAL---ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLEL---EELG-FKLVAYPLS 312 (462)
Q Consensus 240 deAI~RakAy~eAGAD~Ifie~~---~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL---~~lG-v~~V~yp~~ 312 (462)
++|++.++++.+.| ..|+|-+ .+.+.++++.+..+ +|+.+. . -..+..++ -+.| ++.+..-..
T Consensus 191 ~~A~~~~~~l~~~~--~~~iEeP~~~~d~~~~~~L~~~~~-~pIa~d-----E--s~~~~~~~~~li~~~a~d~v~~d~~ 260 (382)
T PRK14017 191 PMAKVLAKELEPYR--PMFIEEPVLPENAEALPEIAAQTS-IPIATG-----E--RLFSRWDFKRVLEAGGVDIIQPDLS 260 (382)
T ss_pred HHHHHHHHhhcccC--CCeEECCCCcCCHHHHHHHHhcCC-CCEEeC-----C--ccCCHHHHHHHHHcCCCCeEecCcc
Confidence 99999999998865 4588865 35678888888765 675532 1 12344444 4444 666655443
No 214
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=93.54 E-value=3.1 Score=41.85 Aligned_cols=207 Identities=20% Similarity=0.236 Sum_probs=109.4
Q ss_pred HHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCC--CCCC-HHHH-HHHHHHHHH
Q 012478 101 SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDN--GYGN-AMNV-KRTVKGYIK 176 (462)
Q Consensus 101 SArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~Dt--GyG~-~~nv-~rtVk~l~~ 176 (462)
-|+.+.++||+.|=+++-+.-.+..++-... + .|.+..++.....+.+-.++=+.+ ||.. +.++ ...++...+
T Consensus 26 ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~--~-~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~di~~~~~ 102 (275)
T cd07937 26 IAEALDEAGFFSLEVWGGATFDVCMRFLNED--P-WERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVELFVEKAAK 102 (275)
T ss_pred HHHHHHHcCCCEEEccCCcchhhhccccCCC--H-HHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHHHHHHHHH
Confidence 4778889999999887422211223443221 1 233333332221122222233333 4432 3443 455788889
Q ss_pred hCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEE-EEecchhhcccHHHHHHHHHHhHhcCCc
Q 012478 177 AGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVI-VARTDSRQALSLEESLRRSRAFADAGAD 255 (462)
Q Consensus 177 AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vI-iARTDA~~~~gldeAI~RakAy~eAGAD 255 (462)
.|+..|+|-+... + ++++..+++..++.|..+.+ +.=+++ .....+..++-++...++|||
T Consensus 103 ~g~~~iri~~~~~-------------~----~~~~~~~i~~ak~~G~~v~~~i~~~~~-~~~~~~~~~~~~~~~~~~Ga~ 164 (275)
T cd07937 103 NGIDIFRIFDALN-------------D----VRNLEVAIKAVKKAGKHVEGAICYTGS-PVHTLEYYVKLAKELEDMGAD 164 (275)
T ss_pred cCCCEEEEeecCC-------------h----HHHHHHHHHHHHHCCCeEEEEEEecCC-CCCCHHHHHHHHHHHHHcCCC
Confidence 9999999976531 1 23444444444443422222 111233 224567888899999999999
Q ss_pred EEEec---CCCCHHHHHHHHHhCCC-CceeeeeeecCCCCCCCC---HHHHHhcCCCEEeccchHH--HHHHHHHHHHHH
Q 012478 256 VLFID---ALASKEEMKAFCEISPL-VPKMANMLEGGGKTPILN---PLELEELGFKLVAYPLSLI--GVSVRAMQDALT 326 (462)
Q Consensus 256 ~Ifie---~~~s~eei~~i~~~v~~-vP~~~N~l~~~g~tP~ls---~~eL~~lGv~~V~yp~~ll--~aa~~Am~~~l~ 326 (462)
.|.+- |.-+++++.++.+.+.. +|.++.+ ..+ .+..+. .-.--+.|++.|-.....+ ++...++++.+.
T Consensus 165 ~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~l~~-H~H-nd~GlA~aN~laA~~aGa~~vd~sv~GlG~~aGN~~~E~l~~ 242 (275)
T cd07937 165 SICIKDMAGLLTPYAAYELVKALKKEVGLPIHL-HTH-DTSGLAVATYLAAAEAGVDIVDTAISPLSGGTSQPSTESMVA 242 (275)
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHHhCCCeEEE-Eec-CCCChHHHHHHHHHHhCCCEEEEecccccCCcCChhHHHHHH
Confidence 99884 34566777766654321 2333332 211 122232 2233367998887655544 355566666666
Q ss_pred HHHc
Q 012478 327 AIKG 330 (462)
Q Consensus 327 ~l~~ 330 (462)
.|+.
T Consensus 243 ~L~~ 246 (275)
T cd07937 243 ALRG 246 (275)
T ss_pred HHHc
Confidence 6654
No 215
>cd03321 mandelate_racemase Mandelate racemase (MR) catalyzes the Mg2+-dependent 1,1-proton transfer reaction that interconverts the enantiomers of mandelic acid. MR is the first enzyme in the bacterial pathway that converts mandelic acid to benzoic acid and allows this pathway to utilize either enantiomer of mandelate. MR belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=93.52 E-value=1.5 Score=45.37 Aligned_cols=135 Identities=19% Similarity=0.297 Sum_probs=88.3
Q ss_pred CcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEe
Q 012478 151 IPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVAR 230 (462)
Q Consensus 151 iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiAR 230 (462)
+|+-+= .|++++....+.++++.+.|...+||- +|.. +.++-+++|++++++ .|+++.|.
T Consensus 131 v~~y~s--~~~~~~~~~~~~a~~~~~~Gf~~~KiK-------vg~~------~~~~d~~~v~air~~---~g~~~~l~-- 190 (355)
T cd03321 131 VQAYDS--HGLDGAKLATERAVTAAEEGFHAVKTK-------IGYP------TADEDLAVVRSIRQA---VGDGVGLM-- 190 (355)
T ss_pred eeEEEe--CCCChHHHHHHHHHHHHHhhhHHHhhh-------cCCC------ChHhHHHHHHHHHHh---hCCCCEEE--
Confidence 555432 355666677777788888899999982 3321 224446778887766 36677664
Q ss_pred cchhhcccHHHHHHHHHHhHhcCCcEEEecCC---CCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhc----C
Q 012478 231 TDSRQALSLEESLRRSRAFADAGADVLFIDAL---ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEEL----G 303 (462)
Q Consensus 231 TDA~~~~gldeAI~RakAy~eAGAD~Ifie~~---~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~l----G 303 (462)
.|+-...++++|++.++++.+.| ..|+|-+ .+.+.++++.+..+ +|+.+. .. ..+..++.++ +
T Consensus 191 vDaN~~~~~~~A~~~~~~l~~~~--i~~iEeP~~~~d~~~~~~l~~~~~-ipia~~-----E~--~~~~~~~~~~i~~~~ 260 (355)
T cd03321 191 VDYNQSLTVPEAIERGQALDQEG--LTWIEEPTLQHDYEGHARIASALR-TPVQMG-----EN--WLGPEEMFKALSAGA 260 (355)
T ss_pred EeCCCCcCHHHHHHHHHHHHcCC--CCEEECCCCCcCHHHHHHHHHhcC-CCEEEc-----CC--CcCHHHHHHHHHhCC
Confidence 58877788999999999999875 5677754 35678888988875 565421 11 2355555544 4
Q ss_pred CCEEeccchHHH
Q 012478 304 FKLVAYPLSLIG 315 (462)
Q Consensus 304 v~~V~yp~~ll~ 315 (462)
++.+..-....+
T Consensus 261 ~d~i~~~~~~~G 272 (355)
T cd03321 261 CDLVMPDLMKIG 272 (355)
T ss_pred CCeEecCHhhhC
Confidence 676665554443
No 216
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=93.48 E-value=5.4 Score=41.23 Aligned_cols=171 Identities=16% Similarity=0.159 Sum_probs=90.8
Q ss_pred ecccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHH
Q 012478 93 GPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVK 172 (462)
Q Consensus 93 ~p~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk 172 (462)
|.++-|.-.|..+.++|-=.+... ..+.++.....+.+. -++.+-.-.|. + .+....++
T Consensus 42 M~~vt~~~ma~ava~~GglGvi~~---------------~~~~~~~~~~i~~vk----~~l~v~~~~~~-~-~~~~~~~~ 100 (325)
T cd00381 42 MDTVTESEMAIAMARLGGIGVIHR---------------NMSIEEQAEEVRKVK----GRLLVGAAVGT-R-EDDKERAE 100 (325)
T ss_pred CCcCCcHHHHHHHHHCCCEEEEeC---------------CCCHHHHHHHHHHhc----cCceEEEecCC-C-hhHHHHHH
Confidence 346667777776666653222211 123466555555553 23333333343 2 34556677
Q ss_pred HHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhc
Q 012478 173 GYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADA 252 (462)
Q Consensus 173 ~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eA 252 (462)
.++++|+..|.| |-. .||. +...+.|+.++++ .++..|++=+ . ...+.++.+.++
T Consensus 101 ~l~eagv~~I~v-d~~----~G~~--------~~~~~~i~~ik~~----~p~v~Vi~G~-v-------~t~~~A~~l~~a 155 (325)
T cd00381 101 ALVEAGVDVIVI-DSA----HGHS--------VYVIEMIKFIKKK----YPNVDVIAGN-V-------VTAEAARDLIDA 155 (325)
T ss_pred HHHhcCCCEEEE-ECC----CCCc--------HHHHHHHHHHHHH----CCCceEEECC-C-------CCHHHHHHHHhc
Confidence 888899999988 322 1332 2344455555543 2456666511 1 114468888899
Q ss_pred CCcEEEec---------------CCCCHHHHHHHHHhCC--CCceeeeeeecCCCCCCCCHHHHHhcCCCEEeccchH
Q 012478 253 GADVLFID---------------ALASKEEMKAFCEISP--LVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSL 313 (462)
Q Consensus 253 GAD~Ifie---------------~~~s~eei~~i~~~v~--~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~l 313 (462)
|||+|.+. +.++...+..+.+... .+|++ ..||-...-.....-++|...|..+..+
T Consensus 156 GaD~I~vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVI----A~GGI~~~~di~kAla~GA~~VmiGt~f 229 (325)
T cd00381 156 GADGVKVGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVI----ADGGIRTSGDIVKALAAGADAVMLGSLL 229 (325)
T ss_pred CCCEEEECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEE----ecCCCCCHHHHHHHHHcCCCEEEecchh
Confidence 99999873 1122233334433322 25544 3334322223445556899988887643
No 217
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=93.48 E-value=3.6 Score=41.81 Aligned_cols=204 Identities=14% Similarity=0.107 Sum_probs=112.7
Q ss_pred HHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccE
Q 012478 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAG 181 (462)
Q Consensus 102 Arl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaG 181 (462)
|+.+.++|++.|=++++... --.|.... -.| .++.|.+..+..+.+=.. + .+-+++..++|+..
T Consensus 32 a~~L~~~Gv~~IEvgsf~~p---~~~p~~~d--~~e---~~~~l~~~~~~~~~~l~~----~----~~~ie~A~~~g~~~ 95 (287)
T PRK05692 32 IDRLSAAGLSYIEVASFVSP---KWVPQMAD--AAE---VMAGIQRRPGVTYAALTP----N----LKGLEAALAAGADE 95 (287)
T ss_pred HHHHHHcCCCEEEeCCCcCc---cccccccc--HHH---HHHhhhccCCCeEEEEec----C----HHHHHHHHHcCCCE
Confidence 45667889999998854311 01233221 133 334443322222211011 2 33345666889999
Q ss_pred EEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEE-ecch-----hhcccHHHHHHHHHHhHhcCCc
Q 012478 182 IILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVA-RTDS-----RQALSLEESLRRSRAFADAGAD 255 (462)
Q Consensus 182 I~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiA-RTDA-----~~~~gldeAI~RakAy~eAGAD 255 (462)
|+|-....+ .|...+-=.+.+|.+++++.+++..++.| +.+.+ =+.+ ......+..++-++.+.++|||
T Consensus 96 v~i~~~~s~---~~~~~n~~~~~~e~l~~~~~~v~~ak~~g--~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~d 170 (287)
T PRK05692 96 VAVFASASE---AFSQKNINCSIAESLERFEPVAEAAKQAG--VRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALGCY 170 (287)
T ss_pred EEEEEecCH---HHHHHHhCCCHHHHHHHHHHHHHHHHHcC--CEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCc
Confidence 999876542 12221222357888999998888877654 33321 1111 1123567888999999999999
Q ss_pred EEEec---CCCCHHHHHHHHHh----CCCCceeeeeeecCCCCCCCCH---HHHHhcCCCEEeccchHH--------HHH
Q 012478 256 VLFID---ALASKEEMKAFCEI----SPLVPKMANMLEGGGKTPILNP---LELEELGFKLVAYPLSLI--------GVS 317 (462)
Q Consensus 256 ~Ifie---~~~s~eei~~i~~~----v~~vP~~~N~l~~~g~tP~ls~---~eL~~lGv~~V~yp~~ll--------~aa 317 (462)
.|.+. |.-++.++.++.+. ++.+| +.+ ..+. +..+.. -.--+.|++.+--....+ ++.
T Consensus 171 ~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~--i~~-H~Hn-~~Gla~AN~laA~~aG~~~id~s~~GlGecpfa~g~aG 246 (287)
T PRK05692 171 EISLGDTIGVGTPGQVRAVLEAVLAEFPAER--LAG-HFHD-TYGQALANIYASLEEGITVFDASVGGLGGCPYAPGASG 246 (287)
T ss_pred EEEeccccCccCHHHHHHHHHHHHHhCCCCe--EEE-EecC-CCCcHHHHHHHHHHhCCCEEEEEccccCCCCCCCCccc
Confidence 99885 34566677666654 43233 322 2211 223322 334467888876655544 345
Q ss_pred HHHHHHHHHHHHc
Q 012478 318 VRAMQDALTAIKG 330 (462)
Q Consensus 318 ~~Am~~~l~~l~~ 330 (462)
..++++.+..|..
T Consensus 247 N~~~E~lv~~L~~ 259 (287)
T PRK05692 247 NVATEDVLYMLHG 259 (287)
T ss_pred cccHHHHHHHHHh
Confidence 5566666666654
No 218
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=93.47 E-value=8.7 Score=38.23 Aligned_cols=87 Identities=14% Similarity=0.193 Sum_probs=61.1
Q ss_pred HHHHHHhCCCceE--ecccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeC
Q 012478 80 SLRQILELPGVHQ--GPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDG 157 (462)
Q Consensus 80 ~LR~ll~~~~~iv--~p~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~ 157 (462)
+|+++|+++++++ .....+...+.++..+|||.+++=- .+. ..++.++...++.+ +..+..++|=.
T Consensus 2 ~lk~~l~~g~~~~g~~~~~~~p~~~e~~~~~g~D~v~iDl----------EH~-~~~~~~~~~~~~a~-~~~g~~~~VRv 69 (249)
T TIGR02311 2 QFKQALKEGQPQIGLWLGLADPYAAEICAGAGFDWLLIDG----------EHA-PNDVRTILSQLQAL-APYPSSPVVRP 69 (249)
T ss_pred hHHHHHHCCCceEEEEEeCCCcHHHHHHHhcCCCEEEEec----------cCC-CCCHHHHHHHHHHH-HhcCCCcEEEC
Confidence 4889999888743 3456677888888899999999652 221 14777777766554 34456777777
Q ss_pred CCCCCCHHHHHHHHHHHHHhCccEEEe
Q 012478 158 DNGYGNAMNVKRTVKGYIKAGFAGIIL 184 (462)
Q Consensus 158 DtGyG~~~nv~rtVk~l~~AGaaGI~I 184 (462)
+.. ++. .+++...+|+.||.+
T Consensus 70 ~~~--~~~----~i~~~Ld~Ga~gIiv 90 (249)
T TIGR02311 70 AIG--DPV----LIKQLLDIGAQTLLV 90 (249)
T ss_pred CCC--CHH----HHHHHhCCCCCEEEe
Confidence 654 332 567888999999987
No 219
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.45 E-value=1.3 Score=46.70 Aligned_cols=71 Identities=20% Similarity=0.230 Sum_probs=43.4
Q ss_pred hHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHHhC
Q 012478 99 ALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAG 178 (462)
Q Consensus 99 alSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~AG 178 (462)
.--+++++++|.|+|.+.+-... ..++.+.. .+.++....+ ..++|||+ .+ -.+ .+.++.++++|
T Consensus 144 ~e~a~~l~eaGvd~I~vhgrt~~-~~h~~~~~---~~~~i~~~ik----~~~ipVIa-G~--V~t----~e~A~~l~~aG 208 (368)
T PRK08649 144 QELAPTVVEAGVDLFVIQGTVVS-AEHVSKEG---EPLNLKEFIY----ELDVPVIV-GG--CVT----YTTALHLMRTG 208 (368)
T ss_pred HHHHHHHHHCCCCEEEEeccchh-hhccCCcC---CHHHHHHHHH----HCCCCEEE-eC--CCC----HHHHHHHHHcC
Confidence 35567888999999999763322 12444332 2344433333 35899998 11 122 33456677899
Q ss_pred ccEEEe
Q 012478 179 FAGIIL 184 (462)
Q Consensus 179 aaGI~I 184 (462)
|++|++
T Consensus 209 AD~V~V 214 (368)
T PRK08649 209 AAGVLV 214 (368)
T ss_pred CCEEEE
Confidence 999988
No 220
>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]
Probab=93.42 E-value=2 Score=44.10 Aligned_cols=132 Identities=18% Similarity=0.170 Sum_probs=85.9
Q ss_pred HHHHHHHHhCCcEEEeccHHHHhhhccC-CCCCCCCHHHHHHHHHHHHhhcC---CcEEEeCCC-CCCCHHHHHHHHHHH
Q 012478 100 LSAKLVEKSGFSFCFTSGFSISAARLAL-PDTGFISYGEMVDQGQLITQAVS---IPVIGDGDN-GYGNAMNVKRTVKGY 174 (462)
Q Consensus 100 lSArl~e~aGfdaI~vSG~avSas~lG~-PD~g~vsl~Eml~~~~~I~ra~~---iPVIaD~Dt-GyG~~~nv~rtVk~l 174 (462)
-+.+.++++|.-++-+=-.... -..|+ |...+++.+||++.++.+.++.. .-|++=.|. +-++...+.+-.+.|
T Consensus 97 rtV~~~~~aG~agi~iEDq~~p-k~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld~AI~Ra~AY 175 (289)
T COG2513 97 RTVRELEQAGAAGIHIEDQVGP-KRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGLDDAIERAQAY 175 (289)
T ss_pred HHHHHHHHcCcceeeeeecccc-hhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhccHHHHHHHHHHH
Confidence 4567888999988887632221 24566 77899999999999999988763 335555555 345555566666899
Q ss_pred HHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEE----EecchhhcccHHHHHHHHHHhH
Q 012478 175 IKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIV----ARTDSRQALSLEESLRRSRAFA 250 (462)
Q Consensus 175 ~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIi----ARTDA~~~~gldeAI~RakAy~ 250 (462)
++|||++|..|.-. +. |+..++..++. .++.+| ++|-.. ....++
T Consensus 176 ~eAGAD~if~~al~--------------~~-e~i~~f~~av~------~pl~~N~t~~g~tp~~----------~~~~L~ 224 (289)
T COG2513 176 VEAGADAIFPEALT--------------DL-EEIRAFAEAVP------VPLPANITEFGKTPLL----------TVAELA 224 (289)
T ss_pred HHcCCcEEccccCC--------------CH-HHHHHHHHhcC------CCeeeEeeccCCCCCc----------CHHHHH
Confidence 99999999998742 32 33344433332 234333 233111 246788
Q ss_pred hcCCcEEEecCCC
Q 012478 251 DAGADVLFIDALA 263 (462)
Q Consensus 251 eAGAD~Ifie~~~ 263 (462)
++|...|+.+...
T Consensus 225 ~~Gv~~V~~~~~~ 237 (289)
T COG2513 225 ELGVKRVSYGLTA 237 (289)
T ss_pred hcCceEEEECcHH
Confidence 9999999876543
No 221
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=93.40 E-value=0.85 Score=44.25 Aligned_cols=91 Identities=18% Similarity=0.109 Sum_probs=58.4
Q ss_pred hHHHHHHHHhCCCceEecccCChHHHHHHHHhCCcEEEeccHHHHhhhccC-CCCCCCCHHHHHHHHHHHHhhcCCcEEE
Q 012478 77 PAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLAL-PDTGFISYGEMVDQGQLITQAVSIPVIG 155 (462)
Q Consensus 77 ~a~~LR~ll~~~~~iv~p~ayDalSArl~e~aGfdaI~vSG~avSas~lG~-PD~g~vsl~Eml~~~~~I~ra~~iPVIa 155 (462)
-.+-+++.++.. .++|.-|.+.--|+.++++|||.|.++= .|| |++.. ..-=++.++++++. ++|||+
T Consensus 81 l~~li~~i~~~~-~l~MADist~ee~~~A~~~G~D~I~TTL-------sGYT~~t~~--~~pD~~lv~~l~~~-~~pvIa 149 (192)
T PF04131_consen 81 LEELIREIKEKY-QLVMADISTLEEAINAAELGFDIIGTTL-------SGYTPYTKG--DGPDFELVRELVQA-DVPVIA 149 (192)
T ss_dssp HHHHHHHHHHCT-SEEEEE-SSHHHHHHHHHTT-SEEE-TT-------TTSSTTSTT--SSHHHHHHHHHHHT-TSEEEE
T ss_pred HHHHHHHHHHhC-cEEeeecCCHHHHHHHHHcCCCEEEccc-------ccCCCCCCC--CCCCHHHHHHHHhC-CCcEee
Confidence 345566666666 8999999999999999999999998871 133 22222 11223445566665 899988
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhCccEEEe
Q 012478 156 DGDNGYGNAMNVKRTVKGYIKAGFAGIIL 184 (462)
Q Consensus 156 D~DtGyG~~~nv~rtVk~l~~AGaaGI~I 184 (462)
. .+|..++++. +..++||.+|.+
T Consensus 150 E--Gri~tpe~a~----~al~~GA~aVVV 172 (192)
T PF04131_consen 150 E--GRIHTPEQAA----KALELGAHAVVV 172 (192)
T ss_dssp E--SS--SHHHHH----HHHHTT-SEEEE
T ss_pred c--CCCCCHHHHH----HHHhcCCeEEEE
Confidence 6 4466776665 555799999988
No 222
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=93.36 E-value=0.34 Score=52.67 Aligned_cols=98 Identities=18% Similarity=0.237 Sum_probs=62.3
Q ss_pred HHHHHHhC-CCceEec-ccCChHHHHHHHHhCCcEEEec-cHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEe
Q 012478 80 SLRQILEL-PGVHQGP-ACFDALSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGD 156 (462)
Q Consensus 80 ~LR~ll~~-~~~iv~p-~ayDalSArl~e~aGfdaI~vS-G~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD 156 (462)
.++++.+. ++..++. ++-.+-.|+-+.++|+|+|-++ |-+-.++..++-..+ ++.=+.+..+...++..++|||+|
T Consensus 258 ~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~vgig~gsictt~~~~~~~-~p~~~av~~~~~~~~~~~~~via~ 336 (479)
T PRK07807 258 ALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKVGVGPGAMCTTRMMTGVG-RPQFSAVLECAAAARELGAHVWAD 336 (479)
T ss_pred HHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEEECccCCcccccccccCCc-hhHHHHHHHHHHHHHhcCCcEEec
Confidence 34444433 3455555 8999999999999999999977 443333334554433 233344555555566678999998
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCccEEEe
Q 012478 157 GDNGYGNAMNVKRTVKGYIKAGFAGIIL 184 (462)
Q Consensus 157 ~DtGyG~~~nv~rtVk~l~~AGaaGI~I 184 (462)
. |..++.++. |. ..+||++|.+
T Consensus 337 g--gi~~~~~~~---~a-l~~ga~~v~~ 358 (479)
T PRK07807 337 G--GVRHPRDVA---LA-LAAGASNVMI 358 (479)
T ss_pred C--CCCCHHHHH---HH-HHcCCCeeec
Confidence 4 333444443 33 3589999988
No 223
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=93.35 E-value=2.6 Score=43.39 Aligned_cols=81 Identities=22% Similarity=0.205 Sum_probs=52.8
Q ss_pred HHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCH-HHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHHhC
Q 012478 100 LSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISY-GEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAG 178 (462)
Q Consensus 100 lSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl-~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~AG 178 (462)
--|+.++++|++++-+--.+. .+.++...... +.+.+.++.|++.+++||++=+--++. ++.+.++.++++|
T Consensus 118 ~~a~~~~~agad~ielN~scp----p~~~~~~g~~~~~~~~eil~~v~~~~~iPV~vKl~p~~~---~~~~~a~~l~~~G 190 (334)
T PRK07565 118 DYARQIEQAGADALELNIYYL----PTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKLSPYFS---NLANMAKRLDAAG 190 (334)
T ss_pred HHHHHHHHcCCCEEEEeCCCC----CCCCCCccccHHHHHHHHHHHHHhccCCcEEEEeCCCch---hHHHHHHHHHHcC
Confidence 446777888999988742110 12222211223 235577788888889999998643333 4567778888999
Q ss_pred ccEEEeCCC
Q 012478 179 FAGIILEDQ 187 (462)
Q Consensus 179 aaGI~IEDq 187 (462)
++||.+-..
T Consensus 191 ~dgI~~~n~ 199 (334)
T PRK07565 191 ADGLVLFNR 199 (334)
T ss_pred CCeEEEECC
Confidence 999988554
No 224
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=93.31 E-value=3.4 Score=40.71 Aligned_cols=174 Identities=10% Similarity=0.072 Sum_probs=102.6
Q ss_pred HHHHHHHH-hCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHHhC
Q 012478 100 LSAKLVEK-SGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAG 178 (462)
Q Consensus 100 lSArl~e~-aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~AG 178 (462)
-.|+..++ .|++-+++--+-- +.-|.+ ...+..+.|++.+++||.++ .|.-+ .+.++++.++|
T Consensus 35 ~~a~~~~~~~Ga~~l~ivDLd~--a~~~~~--------~n~~~I~~i~~~~~~pi~vG--GGIrs----~e~v~~~l~~G 98 (234)
T PRK13587 35 ESIAYYSQFECVNRIHIVDLIG--AKAQHA--------REFDYIKSLRRLTTKDIEVG--GGIRT----KSQIMDYFAAG 98 (234)
T ss_pred HHHHHHHhccCCCEEEEEECcc--cccCCc--------chHHHHHHHHhhcCCeEEEc--CCcCC----HHHHHHHHHCC
Confidence 46677777 6999999985432 122443 23566788888888998776 33334 34466788899
Q ss_pred ccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhh----cccH-----HHHHHHHHHh
Q 012478 179 FAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQ----ALSL-----EESLRRSRAF 249 (462)
Q Consensus 179 aaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~----~~gl-----deAI~RakAy 249 (462)
|.=|.| +.. .+-++ +++.++ ....+ +=++++ -|... ..++ -+.++-++.+
T Consensus 99 a~kvvi-gt~-----------a~~~~-~~l~~~------~~~fg-~~ivvs-lD~~~g~v~~~gw~~~~~~~~~~~~~~~ 157 (234)
T PRK13587 99 INYCIV-GTK-----------GIQDT-DWLKEM------AHTFP-GRIYLS-VDAYGEDIKVNGWEEDTELNLFSFVRQL 157 (234)
T ss_pred CCEEEE-Cch-----------HhcCH-HHHHHH------HHHcC-CCEEEE-EEeeCCEEEecCCcccCCCCHHHHHHHH
Confidence 999987 321 12222 233332 22222 223333 44421 1111 1135567778
Q ss_pred HhcCCcEEEecCC--------CCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 012478 250 ADAGADVLFIDAL--------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (462)
Q Consensus 250 ~eAGAD~Ifie~~--------~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~ll~ 315 (462)
.+.|+..+.+-.+ .+.+.++++++..+ +|+. ..||-...-..+++.++|+..|+.+..+..
T Consensus 158 ~~~g~~~ii~tdi~~dGt~~G~~~~li~~l~~~~~-ipvi----~~GGi~s~edi~~l~~~G~~~vivG~a~~~ 226 (234)
T PRK13587 158 SDIPLGGIIYTDIAKDGKMSGPNFELTGQLVKATT-IPVI----ASGGIRHQQDIQRLASLNVHAAIIGKAAHQ 226 (234)
T ss_pred HHcCCCEEEEecccCcCCCCccCHHHHHHHHHhCC-CCEE----EeCCCCCHHHHHHHHHcCCCEEEEhHHHHh
Confidence 8899887776554 35677888888654 4543 233433223456677899999999887664
No 225
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=93.30 E-value=1.7 Score=44.67 Aligned_cols=152 Identities=16% Similarity=0.162 Sum_probs=86.8
Q ss_pred HHHHHHHhCCcEEEec-cHHHHh-hhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCC-HHHHHHHHHHHHHh
Q 012478 101 SAKLVEKSGFSFCFTS-GFSISA-ARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGN-AMNVKRTVKGYIKA 177 (462)
Q Consensus 101 SArl~e~aGfdaI~vS-G~avSa-s~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~-~~nv~rtVk~l~~A 177 (462)
.|+++++.||+.|=+- |.-..- ...|.=..-+-..+.+.+.++.+.+++++||.+=+-.||-. ..+..+.++.++++
T Consensus 82 aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~ 161 (321)
T PRK10415 82 AARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDC 161 (321)
T ss_pred HHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHh
Confidence 3566777899988765 322210 01121011112345566667777788899999988888764 34678888999999
Q ss_pred CccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhH-hcCCcE
Q 012478 178 GFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFA-DAGADV 256 (462)
Q Consensus 178 GaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~-eAGAD~ 256 (462)
|+++|.+.+...+. ...|+. +. +++.+|+. + .++-|++--|-... + .++.+. +.|||+
T Consensus 162 G~d~i~vh~rt~~~---~~~G~a--~~-~~i~~ik~---~-----~~iPVI~nGgI~s~---~----da~~~l~~~gadg 220 (321)
T PRK10415 162 GIQALTIHGRTRAC---LFNGEA--EY-DSIRAVKQ---K-----VSIPVIANGDITDP---L----KARAVLDYTGADA 220 (321)
T ss_pred CCCEEEEecCcccc---ccCCCc--Ch-HHHHHHHH---h-----cCCcEEEeCCCCCH---H----HHHHHHhccCCCE
Confidence 99999997754211 111211 22 34444432 2 23455555554332 2 233333 379999
Q ss_pred EEec--CCCCHHHHHHHHH
Q 012478 257 LFID--ALASKEEMKAFCE 273 (462)
Q Consensus 257 Ifie--~~~s~eei~~i~~ 273 (462)
|++- .+.++-.++++.+
T Consensus 221 VmiGR~~l~nP~if~~~~~ 239 (321)
T PRK10415 221 LMIGRAAQGRPWIFREIQH 239 (321)
T ss_pred EEEChHhhcCChHHHHHHH
Confidence 9984 3445555555544
No 226
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=93.27 E-value=7.4 Score=40.93 Aligned_cols=138 Identities=16% Similarity=0.051 Sum_probs=84.9
Q ss_pred CChHHHHHHHHhCCcEEEec-cHHHHhhhccCCCCCCCCHHHHHHHHHHHHh---hcCCcEEEeC------CC-CCCCHH
Q 012478 97 FDALSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQ---AVSIPVIGDG------DN-GYGNAM 165 (462)
Q Consensus 97 yDalSArl~e~aGfdaI~vS-G~avSas~lG~PD~g~vsl~Eml~~~~~I~r---a~~iPVIaD~------Dt-GyG~~~ 165 (462)
+..--...+-++|++.|.+. +..-. +-. -.-..+.+|.++.+..+.+ ..++.|.+-+ |+ |.-++.
T Consensus 122 ~n~~die~A~~~g~~~v~i~~s~Sd~---h~~-~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~ 197 (347)
T PLN02746 122 PNLKGFEAAIAAGAKEVAVFASASES---FSK-SNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPPS 197 (347)
T ss_pred CCHHHHHHHHHcCcCEEEEEEecCHH---HHH-HHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCCHH
Confidence 35555566667899876655 21111 111 1122678888886666544 3457774333 22 222567
Q ss_pred HHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHH
Q 012478 166 NVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRR 245 (462)
Q Consensus 166 nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~R 245 (462)
.+.+.++.+.++||.-|.|-|.+ |. ..+.++.+.++++++.... ..+-+-...| +.-++.-
T Consensus 198 ~l~~~~~~~~~~Gad~I~l~DT~-----G~------a~P~~v~~lv~~l~~~~~~--~~i~~H~Hnd------~GlA~AN 258 (347)
T PLN02746 198 KVAYVAKELYDMGCYEISLGDTI-----GV------GTPGTVVPMLEAVMAVVPV--DKLAVHFHDT------YGQALAN 258 (347)
T ss_pred HHHHHHHHHHHcCCCEEEecCCc-----CC------cCHHHHHHHHHHHHHhCCC--CeEEEEECCC------CChHHHH
Confidence 89999999999999999999986 43 3355677777777654210 1243444433 2345777
Q ss_pred HHHhHhcCCcEE
Q 012478 246 SRAFADAGADVL 257 (462)
Q Consensus 246 akAy~eAGAD~I 257 (462)
+.+..+|||+.+
T Consensus 259 ~lAA~~aGa~~v 270 (347)
T PLN02746 259 ILVSLQMGISTV 270 (347)
T ss_pred HHHHHHhCCCEE
Confidence 888899999975
No 227
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=93.27 E-value=1.6 Score=42.55 Aligned_cols=172 Identities=17% Similarity=0.155 Sum_probs=98.3
Q ss_pred HHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccE
Q 012478 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAG 181 (462)
Q Consensus 102 Arl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaG 181 (462)
|+.+.++|.|++++||. .| ++.+.|.+.+++|.+.+++||+.= + |+...+. -+|++
T Consensus 17 a~~v~~~gtDaI~VGGS------~g------vt~~~~~~~v~~ik~~~~lPvilf-p---~~~~~i~--------~~aD~ 72 (205)
T TIGR01769 17 AKNAKDAGTDAIMVGGS------LG------IVESNLDQTVKKIKKITNLPVILF-P---GNVNGLS--------RYADA 72 (205)
T ss_pred HHHHHhcCCCEEEEcCc------CC------CCHHHHHHHHHHHHhhcCCCEEEE-C---CCccccC--------cCCCE
Confidence 45677899999999973 22 477888888888888889999983 2 3333332 36777
Q ss_pred EEeCCCCCCCCCCCCCCCcccCH-HHHHHHHHHHHHHHHh-hCCCeEEEE------e-cchhh--cccHHHHHHHHHHhH
Q 012478 182 IILEDQVSPKGCGHTRGRKVVSR-EEAVMRIKAAVDARKE-SGSDIVIVA------R-TDSRQ--ALSLEESLRRSRAFA 250 (462)
Q Consensus 182 I~IEDq~~PKrCGH~~gk~Lvp~-ee~~~kI~AA~~Ar~~-~g~d~vIiA------R-TDA~~--~~gldeAI~RakAy~ 250 (462)
+.+=-=.. ..+-.=++-. -+.+..| ++-..+ ....++|+. + |++.. ....|++..-|.+.+
T Consensus 73 ~~~~slln-----s~~~~~i~g~~~~~~~~~---~~~~~e~ip~gYiv~~~~~~v~~v~~a~~ip~~~~e~~~~~a~aa~ 144 (205)
T TIGR01769 73 VFFMSLLN-----SADTYFIVGAQILGAITI---LKLNLEVIPMAYLIVGPGGAVGYVGKAREIPYNKPEIAAAYCLAAK 144 (205)
T ss_pred EEEEEeec-----CCCcchhhhHHHHHHHHH---HHcCCcccceEEEEECCCCceeeecCcccCCCCCHHHHHHHHHHHH
Confidence 76622110 0000001111 1111111 111111 112344431 1 22221 246788888899999
Q ss_pred hcCCcEEEecCC------CCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcCCCEEecc
Q 012478 251 DAGADVLFIDAL------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYP 310 (462)
Q Consensus 251 eAGAD~Ifie~~------~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp 310 (462)
..|++.||++.. .+.+.++++.+... +|+.+ ++|-.-.-..+++.+.|+..|+.|
T Consensus 145 ~~G~~~i~Le~~sGa~~~v~~e~i~~Vk~~~~-~Pv~v----GGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 145 YFGMKWVYLEAGSGASYPVNPETISLVKKASG-IPLIV----GGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred HcCCCEEEEEcCCCCCCCCCHHHHHHHHHhhC-CCEEE----eCCCCCHHHHHHHHHcCCCEEEeC
Confidence 999999999874 45778888888764 56542 334211123455556688888764
No 228
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=93.25 E-value=2.7 Score=43.76 Aligned_cols=145 Identities=15% Similarity=0.187 Sum_probs=81.9
Q ss_pred HHHHHHhCCcEEEec---cHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHHhC
Q 012478 102 AKLVEKSGFSFCFTS---GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAG 178 (462)
Q Consensus 102 Arl~e~aGfdaI~vS---G~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~AG 178 (462)
++.+.++|++.|=++ |++-+...+|.|- .+-.|++..++.... +..+.+=+..|+++. +-++...+.|
T Consensus 31 ~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~---~~~~e~i~~~~~~~~--~~~~~~ll~pg~~~~----~dl~~a~~~g 101 (337)
T PRK08195 31 ARALDAAGVPVIEVTHGDGLGGSSFNYGFGA---HTDEEYIEAAAEVVK--QAKIAALLLPGIGTV----DDLKMAYDAG 101 (337)
T ss_pred HHHHHHcCCCEEEeecCCCCCCccccCCCCC---CCHHHHHHHHHHhCC--CCEEEEEeccCcccH----HHHHHHHHcC
Confidence 456778999999886 3332211225443 334555555443322 233433334677764 3456777899
Q ss_pred ccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEE
Q 012478 179 FAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLF 258 (462)
Q Consensus 179 aaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~If 258 (462)
+..|.|-.. |.. .+...+-|+.+ ++.|.+..++ =.++ .....++.++-++.+.++|||+|+
T Consensus 102 vd~iri~~~-----~~e--------~~~~~~~i~~a----k~~G~~v~~~-l~~a-~~~~~e~l~~~a~~~~~~Ga~~i~ 162 (337)
T PRK08195 102 VRVVRVATH-----CTE--------ADVSEQHIGLA----RELGMDTVGF-LMMS-HMAPPEKLAEQAKLMESYGAQCVY 162 (337)
T ss_pred CCEEEEEEe-----cch--------HHHHHHHHHHH----HHCCCeEEEE-EEec-cCCCHHHHHHHHHHHHhCCCCEEE
Confidence 999998653 221 12222223222 2234333222 2233 224568888999999999999998
Q ss_pred ec---CCCCHHHHHHHHHh
Q 012478 259 ID---ALASKEEMKAFCEI 274 (462)
Q Consensus 259 ie---~~~s~eei~~i~~~ 274 (462)
+- |.-.++++.++.+.
T Consensus 163 i~DT~G~~~P~~v~~~v~~ 181 (337)
T PRK08195 163 VVDSAGALLPEDVRDRVRA 181 (337)
T ss_pred eCCCCCCCCHHHHHHHHHH
Confidence 74 34566777766654
No 229
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=93.23 E-value=1.9 Score=45.24 Aligned_cols=143 Identities=20% Similarity=0.182 Sum_probs=94.0
Q ss_pred HHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHH
Q 012478 169 RTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRA 248 (462)
Q Consensus 169 rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakA 248 (462)
+..+..+++||++|-+--+ .-|++... .-.+.+++.+-|+-|.++ |..+.|..-|=.. ...++...+-.+.
T Consensus 17 ~~l~~ai~~GADaVY~G~~---~~~~R~~a-~nfs~~~l~e~i~~ah~~----gkk~~V~~N~~~~-~~~~~~~~~~l~~ 87 (347)
T COG0826 17 EDLKAAIAAGADAVYIGEK---EFGLRRRA-LNFSVEDLAEAVELAHSA----GKKVYVAVNTLLH-NDELETLERYLDR 87 (347)
T ss_pred HHHHHHHHcCCCEEEeCCc---cccccccc-ccCCHHHHHHHHHHHHHc----CCeEEEEeccccc-cchhhHHHHHHHH
Confidence 3445677899999999544 23655444 456777755555444443 5556665554332 2345556667788
Q ss_pred hHhcCCcEEEecCCCCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcCCCEEeccchHHHHHHHHHHHHH
Q 012478 249 FADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVSVRAMQDAL 325 (462)
Q Consensus 249 y~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~ll~aa~~Am~~~l 325 (462)
+.++|+|+|.+ .++-.+.-+.+..|.+|+-+..... .+...+.+-+.++|++||+.|.-+-..-+..+.+-+
T Consensus 88 l~e~GvDaviv---~Dpg~i~l~~e~~p~l~ih~S~q~~--v~N~~~~~f~~~~G~~rvVl~rEls~~ei~~i~~~~ 159 (347)
T COG0826 88 LVELGVDAVIV---ADPGLIMLARERGPDLPIHVSTQAN--VTNAETAKFWKELGAKRVVLPRELSLEEIKEIKEQT 159 (347)
T ss_pred HHHcCCCEEEE---cCHHHHHHHHHhCCCCcEEEeeeEe--cCCHHHHHHHHHcCCEEEEeCccCCHHHHHHHHHhC
Confidence 89999999986 4566777777777777766554432 234457889999999999999877665555554443
No 230
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=93.21 E-value=1.5 Score=44.44 Aligned_cols=149 Identities=11% Similarity=0.003 Sum_probs=87.2
Q ss_pred CCcEEEec-cHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHHh--CccEEEeC
Q 012478 109 GFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKA--GFAGIILE 185 (462)
Q Consensus 109 GfdaI~vS-G~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~A--GaaGI~IE 185 (462)
|+|++=+- |.-.. -|..+.+ ...+.+.+.++.|.+.+++||++=+--++ +..++.+.++.+.++ |++||.+=
T Consensus 119 ~ad~ielN~sCPn~---~~~~~~~-~~~~~~~~i~~~v~~~~~iPv~vKl~p~~-~~~~~~~~a~~l~~~~~G~~gi~~~ 193 (294)
T cd04741 119 FPLAMELNLSCPNV---PGKPPPA-YDFDATLEYLTAVKAAYSIPVGVKTPPYT-DPAQFDTLAEALNAFACPISFITAT 193 (294)
T ss_pred cccEEEEECCCCCC---CCccccc-CCHHHHHHHHHHHHHhcCCCEEEEeCCCC-CHHHHHHHHHHHhccccCCcEEEEE
Confidence 68877664 32211 1332222 25677778888888888999999997765 556677888888888 99999852
Q ss_pred CCC-----------CCC---CCCC--CCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHh
Q 012478 186 DQV-----------SPK---GCGH--TRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAF 249 (462)
Q Consensus 186 Dq~-----------~PK---rCGH--~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy 249 (462)
... .|. ..++ ..|+.+-|.. .+.|+.+ ++..+.++-|+|-.+-.. -+ .+..|
T Consensus 194 Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~a--l~~v~~~---~~~~~~~ipIig~GGI~s---~~----da~e~ 261 (294)
T cd04741 194 NTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLA--LGNVRTF---RRLLPSEIQIIGVGGVLD---GR----GAFRM 261 (294)
T ss_pred ccCCccccccCCCCCcccCCCCCCCCcCchhhHHHH--HHHHHHH---HHhcCCCCCEEEeCCCCC---HH----HHHHH
Confidence 221 111 1221 2344444432 3333333 332333577887766543 23 35556
Q ss_pred HhcCCcEEEecC--C-CCHHHHHHHHHh
Q 012478 250 ADAGADVLFIDA--L-ASKEEMKAFCEI 274 (462)
Q Consensus 250 ~eAGAD~Ifie~--~-~s~eei~~i~~~ 274 (462)
..||||+|.+-. + .....++++.+.
T Consensus 262 l~aGA~~Vqv~ta~~~~gp~~~~~i~~~ 289 (294)
T cd04741 262 RLAGASAVQVGTALGKEGPKVFARIEKE 289 (294)
T ss_pred HHcCCCceeEchhhhhcCchHHHHHHHH
Confidence 679999998732 2 244555555543
No 231
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=93.20 E-value=10 Score=39.87 Aligned_cols=156 Identities=13% Similarity=0.013 Sum_probs=97.2
Q ss_pred HHHHHHHhCCC--ceEecccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHh---hcCCcE
Q 012478 79 KSLRQILELPG--VHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQ---AVSIPV 153 (462)
Q Consensus 79 ~~LR~ll~~~~--~iv~p~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~r---a~~iPV 153 (462)
+.++.+.+.+. .+.+++-..--....+.++|++.+.+.... |-.. ....-..+.+|+++.+....+ ..+..|
T Consensus 56 e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i~i~~~~-Sd~h--~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v 132 (378)
T PRK11858 56 EAIKAIAKLGLNASILALNRAVKSDIDASIDCGVDAVHIFIAT-SDIH--IKHKLKKTREEVLERMVEAVEYAKDHGLYV 132 (378)
T ss_pred HHHHHHHhcCCCeEEEEEcccCHHHHHHHHhCCcCEEEEEEcC-CHHH--HHHHhCCCHHHHHHHHHHHHHHHHHCCCeE
Confidence 45666655332 234444333444556667899987766211 1000 111122678888877665443 346788
Q ss_pred EEeCCCCCC-CHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecc
Q 012478 154 IGDGDNGYG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTD 232 (462)
Q Consensus 154 IaD~DtGyG-~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTD 232 (462)
.+.+++++- ++..+.+.++.+.++|+..|.|-|.. |. ..++++.+.|+++++.. +.++=+-...|
T Consensus 133 ~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~DT~-----G~------~~P~~v~~lv~~l~~~~---~~~l~~H~Hnd 198 (378)
T PRK11858 133 SFSAEDASRTDLDFLIEFAKAAEEAGADRVRFCDTV-----GI------LDPFTMYELVKELVEAV---DIPIEVHCHND 198 (378)
T ss_pred EEEeccCCCCCHHHHHHHHHHHHhCCCCEEEEeccC-----CC------CCHHHHHHHHHHHHHhc---CCeEEEEecCC
Confidence 889877654 67889999999999999999999985 43 34566777777666543 23444444444
Q ss_pred hhhcccHHHHHHHHHHhHhcCCcEE
Q 012478 233 SRQALSLEESLRRSRAFADAGADVL 257 (462)
Q Consensus 233 A~~~~gldeAI~RakAy~eAGAD~I 257 (462)
- .-|+.-+.+..+|||+.|
T Consensus 199 ~------GlA~AN~laAv~aGa~~v 217 (378)
T PRK11858 199 F------GMATANALAGIEAGAKQV 217 (378)
T ss_pred c------CHHHHHHHHHHHcCCCEE
Confidence 2 345666777788999975
No 232
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=93.11 E-value=1.8 Score=43.58 Aligned_cols=161 Identities=20% Similarity=0.221 Sum_probs=93.7
Q ss_pred HHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHHhCcc
Q 012478 101 SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFA 180 (462)
Q Consensus 101 SArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaa 180 (462)
-|+.+|+.|||++.+.-++-.- =++|.+..+..-|.-.+++|.+.+++||=+..= -| .......-....||.
T Consensus 39 dA~~leegG~DavivEN~gD~P---f~k~v~~~tvaaMa~iv~~v~r~v~iPvGvNVL---rN--d~vaA~~IA~a~gA~ 110 (263)
T COG0434 39 DAAALEEGGVDAVIVENYGDAP---FLKDVGPETVAAMAVIVREVVREVSIPVGVNVL---RN--DAVAALAIAYAVGAD 110 (263)
T ss_pred HHHHHHhCCCcEEEEeccCCCC---CCCCCChHHHHHHHHHHHHHHHhccccceeeee---cc--ccHHHHHHHHhcCCC
Confidence 3677889999999999766431 135778888888999999999999999722210 01 011111122235666
Q ss_pred EEEeCCCCC--CCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhh-----cccHHHHHHHHHHhHhcC
Q 012478 181 GIILEDQVS--PKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQ-----ALSLEESLRRSRAFADAG 253 (462)
Q Consensus 181 GI~IEDq~~--PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~-----~~gldeAI~RakAy~eAG 253 (462)
=|..+--+. ----|-+.|+. -.+.|. +..++.+..|.|-.+-.. ...++++++.+ .+..+
T Consensus 111 FIRVN~~tg~~~tdqGiieg~A-----~e~~r~------r~~L~~~v~vlADv~VKHa~~l~~~~~~~~v~dt--ver~~ 177 (263)
T COG0434 111 FIRVNVLTGAYATDQGIIEGNA-----AELARY------RARLGSRVKVLADVHVKHAVHLGNRSLEEAVKDT--VERGL 177 (263)
T ss_pred EEEEEeeeceEecccceecchH-----HHHHHH------HHhccCCcEEEeecchhcccccCCcCHHHHHHHH--HHccC
Confidence 554322110 00012222211 112222 223456777777655532 23566665543 24467
Q ss_pred CcEEEecCC-----CCHHHHHHHHHhCCCCceeee
Q 012478 254 ADVLFIDAL-----ASKEEMKAFCEISPLVPKMAN 283 (462)
Q Consensus 254 AD~Ifie~~-----~s~eei~~i~~~v~~vP~~~N 283 (462)
||+|.+-+. ++.++++.+.+..+ +|++++
T Consensus 178 aDaVI~tG~~TG~~~d~~el~~a~~~~~-~pvlvG 211 (263)
T COG0434 178 ADAVIVTGSRTGSPPDLEELKLAKEAVD-TPVLVG 211 (263)
T ss_pred CCEEEEecccCCCCCCHHHHHHHHhccC-CCEEEe
Confidence 899999864 67899999999887 677653
No 233
>COG0413 PanB Ketopantoate hydroxymethyltransferase [Coenzyme metabolism]
Probab=93.02 E-value=0.73 Score=46.62 Aligned_cols=101 Identities=21% Similarity=0.235 Sum_probs=69.4
Q ss_pred HHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchh-hcccHHHHHHHHH
Q 012478 169 RTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSR-QALSLEESLRRSR 247 (462)
Q Consensus 169 rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~-~~~gldeAI~Rak 247 (462)
...|.+.++|++.|.+-|...--.-||.. .--|+.++|+---+|.+++. +..+|++----. ...+.+++++-|.
T Consensus 26 ~~A~~~d~agvd~lLVGDSlgmvv~G~~s-Tl~Vsl~~mi~ht~aV~Rga----~~~~vv~DmPF~sy~~s~~~a~~nA~ 100 (268)
T COG0413 26 PFAKLFDQAGVDVLLVGDSLGMVVLGYDS-TLPVTLEDMIYHTKAVRRGA----PNAFVVADLPFGSYEVSPEQALKNAA 100 (268)
T ss_pred HHHhhhhhcCCcEEEEeccHHHHHcCCCC-cceecHHHHHHHHHHHHhcC----CCeeEEeCCCCcccCCCHHHHHHHHH
Confidence 45677888999999999986433345532 34578899988777777665 355555432111 1236799999988
Q ss_pred HhHh-cCCcEEEecCCCC-HHHHHHHHHh
Q 012478 248 AFAD-AGADVLFIDALAS-KEEMKAFCEI 274 (462)
Q Consensus 248 Ay~e-AGAD~Ifie~~~s-~eei~~i~~~ 274 (462)
++.+ +|||+|.+|+-.. .+.++++++.
T Consensus 101 r~~ke~gA~aVKlEGG~~~~~~i~~L~~~ 129 (268)
T COG0413 101 RLMKEAGADAVKLEGGEEMAETIKRLTER 129 (268)
T ss_pred HHHHHhCCCEEEEcCCHHHHHHHHHHHHc
Confidence 8877 9999999998532 3566666664
No 234
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=93.01 E-value=0.31 Score=52.38 Aligned_cols=125 Identities=22% Similarity=0.278 Sum_probs=77.3
Q ss_pred HHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHH
Q 012478 167 VKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRS 246 (462)
Q Consensus 167 v~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~Ra 246 (462)
+.+..+.|.+.+...+-+-|.. |+.-| +++.++..+.+.-. .+.++.+..++|-|..... ++.++|+
T Consensus 163 l~eal~~m~~~~~~~lpVVDe~-----G~lvG--iVT~~DIl~~~~~~-~~~~d~~g~l~V~aav~~~-----~~~~~r~ 229 (450)
T TIGR01302 163 LEEALKVLHEHRIEKLPVVDKN-----GELVG--LITMKDIVKRRKFP-HASKDENGRLIVGAAVGTR-----EFDKERA 229 (450)
T ss_pred HHHHHHHHHHcCCCeEEEEcCC-----CcEEE--EEEhHHhhhcccCC-cceEeCCCCEEEEEEecCc-----hhHHHHH
Confidence 4556677777777766665642 33322 67777776665321 1111112345665554432 4678999
Q ss_pred HHhHhcCCcEEEecCC-----CCHHHHHHHHHhCCCCceee-eeeecCCCCCCCCHHHHHhcCCCEEecc
Q 012478 247 RAFADAGADVLFIDAL-----ASKEEMKAFCEISPLVPKMA-NMLEGGGKTPILNPLELEELGFKLVAYP 310 (462)
Q Consensus 247 kAy~eAGAD~Ifie~~-----~s~eei~~i~~~v~~vP~~~-N~l~~~g~tP~ls~~eL~~lGv~~V~yp 310 (462)
.++.++|+|+|.+..- .-.+.++++.+.+|.+|+++ |++ ++ -....|.++|++.|..+
T Consensus 230 ~~L~~aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~-----t~-~~a~~l~~aGad~i~vg 293 (450)
T TIGR01302 230 EALVKAGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVA-----TA-EQAKALIDAGADGLRVG 293 (450)
T ss_pred HHHHHhCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCC-----CH-HHHHHHHHhCCCEEEEC
Confidence 9999999999999863 22356777777766666654 332 11 24568999999998654
No 235
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=92.98 E-value=1.2 Score=53.39 Aligned_cols=128 Identities=23% Similarity=0.345 Sum_probs=88.7
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEeCCCC-------CC-CHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHH
Q 012478 134 SYGEMVDQGQLITQAVSIPVIGDGDNG-------YG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSRE 205 (462)
Q Consensus 134 sl~Eml~~~~~I~ra~~iPVIaD~DtG-------yG-~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~e 205 (462)
..++|..+++.+...++.||++=...| |- ++....+.++++.+.| |++|=++ .||-++
T Consensus 237 gP~~m~~~l~~l~~~~~~pi~vyPNAGlP~~~~~yd~~p~~~a~~~~~~~~~g--gv~IIGG----CCGTtP-------- 302 (1178)
T TIGR02082 237 GPDEMRPHLKHLSEHAEAYVSCHPNAGLPNAFGEYDLTPDELAKALADFAAEG--GLNIVGG----CCGTTP-------- 302 (1178)
T ss_pred CHHHHHHHHHHHHHhcCceEEEEeCCCCCCCCCcccCCHHHHHHHHHHHHHhC--CCcEEEe----cCCCCH--------
Confidence 467999999999998889999854444 32 4667778888888752 3455577 488543
Q ss_pred HHHHHHHHHHHHHH---------------------hhCCCeEEEE-ecchhh---------cccHHHHHHHHHHhHhcCC
Q 012478 206 EAVMRIKAAVDARK---------------------ESGSDIVIVA-RTDSRQ---------ALSLEESLRRSRAFADAGA 254 (462)
Q Consensus 206 e~~~kI~AA~~Ar~---------------------~~g~d~vIiA-RTDA~~---------~~gldeAI~RakAy~eAGA 254 (462)
++++.|+.+++... ..+..|++|+ |+...+ ..++++++++|+...++||
T Consensus 303 eHI~ala~~l~~~~p~~~~~~~~~~~~s~~~~~~~~~~~~~~~IGEr~N~~G~k~~~~~i~~~d~~~a~~~A~~qve~GA 382 (1178)
T TIGR02082 303 DHIRAIAEAVKNIKPRQRPVLYEPSRLSGLEAITIAQDSNFVNIGERTNVAGSKKFRRLIIAEDYDEALDIAKQQVENGA 382 (1178)
T ss_pred HHHHHHHHHhhcCCCCCCCCcccceeecCceEEeecCCCceEEEeeccchhhhHHHHHHHHcCCHHHHHHHHHHHHHCCC
Confidence 55666666554211 0123478887 777642 3578999999999999999
Q ss_pred cEEEecC----CCCHHHHHHHHHhC
Q 012478 255 DVLFIDA----LASKEEMKAFCEIS 275 (462)
Q Consensus 255 D~Ifie~----~~s~eei~~i~~~v 275 (462)
|+|=|-+ +...++++++...+
T Consensus 383 ~iIDVn~~~~~vd~~eem~rvv~~i 407 (1178)
T TIGR02082 383 QILDINVDYGMLDGVAAMKRFLNLL 407 (1178)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHH
Confidence 9987643 34567888887543
No 236
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=92.95 E-value=0.5 Score=46.00 Aligned_cols=129 Identities=19% Similarity=0.159 Sum_probs=73.4
Q ss_pred HHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecch----hhcccHHHHHHH
Q 012478 170 TVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDS----RQALSLEESLRR 245 (462)
Q Consensus 170 tVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA----~~~~gldeAI~R 245 (462)
.++..++.||+=|-| |+++.---+.|.-..+.. +++. .+.+..++-|--. +....++...+.
T Consensus 12 ~a~~A~~~GAdRiEL--------c~~l~~GGlTPS~g~i~~---~~~~---~~ipv~vMIRpr~gdF~Ys~~E~~~M~~d 77 (201)
T PF03932_consen 12 DALAAEAGGADRIEL--------CSNLEVGGLTPSLGLIRQ---AREA---VDIPVHVMIRPRGGDFVYSDEEIEIMKED 77 (201)
T ss_dssp HHHHHHHTT-SEEEE--------EBTGGGT-B---HHHHHH---HHHH---TTSEEEEE--SSSS-S---HHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEE--------CCCccCCCcCcCHHHHHH---HHhh---cCCceEEEECCCCCCccCCHHHHHHHHHH
Confidence 345566899998887 433321226676554444 4443 2356777777532 234467889999
Q ss_pred HHHhHhcCCcEEEecCCC-----CHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcCCCEEeccch
Q 012478 246 SRAFADAGADVLFIDALA-----SKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLS 312 (462)
Q Consensus 246 akAy~eAGAD~Ifie~~~-----s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~ 312 (462)
.+.+.++|||.+++-.+. +.+.++++.+...+.|..+++--..-.-|.-..++|.++||++|+-...
T Consensus 78 I~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~~~~~tFHRAfD~~~d~~~al~~L~~lG~~rVLTSGg 149 (201)
T PF03932_consen 78 IRMLRELGADGFVFGALTEDGEIDEEALEELIEAAGGMPVTFHRAFDEVPDPEEALEQLIELGFDRVLTSGG 149 (201)
T ss_dssp HHHHHHTT-SEEEE--BETTSSB-HHHHHHHHHHHTTSEEEE-GGGGGSSTHHHHHHHHHHHT-SEEEESTT
T ss_pred HHHHHHcCCCeeEEEeECCCCCcCHHHHHHHHHhcCCCeEEEeCcHHHhCCHHHHHHHHHhcCCCEEECCCC
Confidence 999999999999987763 5678888887766566655542110111222468899999999987544
No 237
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=92.94 E-value=2.8 Score=42.29 Aligned_cols=161 Identities=20% Similarity=0.256 Sum_probs=91.3
Q ss_pred HHHHHHHhCCcEEEeccHHHHhhhccCCC-CCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHHhCc
Q 012478 101 SAKLVEKSGFSFCFTSGFSISAARLALPD-TGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGF 179 (462)
Q Consensus 101 SArl~e~aGfdaI~vSG~avSas~lG~PD-~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~AGa 179 (462)
-|+.+++.|+|+|++.=+.- ..|+- .+..+..-|-..++.|.+..++|+=+++-.. ++ ..+..-...+|+
T Consensus 34 ea~~l~~~GvDgiiveN~~D----~Py~~~~~~etvaaM~~i~~~v~~~~~~p~GVnvL~n--d~---~aalaiA~A~ga 104 (254)
T PF03437_consen 34 EAEALEEGGVDGIIVENMGD----VPYPKRVGPETVAAMARIAREVRREVSVPVGVNVLRN--DP---KAALAIAAATGA 104 (254)
T ss_pred HHHHHHHCCCCEEEEecCCC----CCccCCCCHHHHHHHHHHHHHHHHhCCCCEEeeeecC--CC---HHHHHHHHHhCC
Confidence 46788899999999884331 12221 2333444566667777777788864444331 11 112222334677
Q ss_pred cEEEeCCCCCCCCCCCCCC-CcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchh-----hcccHHHHHHHHHHhHhcC
Q 012478 180 AGIILEDQVSPKGCGHTRG-RKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSR-----QALSLEESLRRSRAFADAG 253 (462)
Q Consensus 180 aGI~IEDq~~PKrCGH~~g-k~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~-----~~~gldeAI~RakAy~eAG 253 (462)
+=|.+|-- ||+.-. .-++... +. .+...|+.++.+..|.|--... ...+++|+.+. +.+..+
T Consensus 105 ~FIRv~~~-----~g~~~~d~G~~~~~--a~---e~~r~R~~l~a~v~ilaDV~~kh~~~l~~~~~~~~~~~--a~~~~~ 172 (254)
T PF03437_consen 105 DFIRVNVF-----VGAYVTDEGIIEGC--AG---ELLRYRKRLGADVKILADVHVKHSSPLATRDLEEAAKD--AVERGG 172 (254)
T ss_pred CEEEecCE-----EceecccCcccccc--HH---HHHHHHHHcCCCeEEEeeechhhcccCCCCCHHHHHHH--HHHhcC
Confidence 77766532 332211 1122111 11 1223344556677777744432 22357776554 335589
Q ss_pred CcEEEecCC-----CCHHHHHHHHHhCCCCceeee
Q 012478 254 ADVLFIDAL-----ASKEEMKAFCEISPLVPKMAN 283 (462)
Q Consensus 254 AD~Ifie~~-----~s~eei~~i~~~v~~vP~~~N 283 (462)
||+|++-+. ++.++++++.+.++ +|++++
T Consensus 173 aDaviVtG~~TG~~~~~~~l~~vr~~~~-~PVlvG 206 (254)
T PF03437_consen 173 ADAVIVTGKATGEPPDPEKLKRVREAVP-VPVLVG 206 (254)
T ss_pred CCEEEECCcccCCCCCHHHHHHHHhcCC-CCEEEe
Confidence 999999875 47889999999887 787653
No 238
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=92.86 E-value=5.9 Score=39.00 Aligned_cols=143 Identities=13% Similarity=0.122 Sum_probs=81.7
Q ss_pred HHHHHHHhhcCCcEEEeCCCCCCCH--HHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHH
Q 012478 140 DQGQLITQAVSIPVIGDGDNGYGNA--MNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDA 217 (462)
Q Consensus 140 ~~~~~I~ra~~iPVIaD~DtGyG~~--~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~A 217 (462)
+.++.+++.+++|++. .+|-++ .+..+.++.+.++|++||.|=|-. +-..++..+-++.+
T Consensus 64 ~~v~~vr~~~~~Pl~l---M~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp------------~e~~~~~~~~~~~~--- 125 (244)
T PRK13125 64 PLLEEVRKDVSVPIIL---MTYLEDYVDSLDNFLNMARDVGADGVLFPDLL------------IDYPDDLEKYVEII--- 125 (244)
T ss_pred HHHHHHhccCCCCEEE---EEecchhhhCHHHHHHHHHHcCCCEEEECCCC------------CCcHHHHHHHHHHH---
Confidence 5677777778899731 134443 356677889999999999995531 00012322222333
Q ss_pred HHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEecCCC---------C-HHHHHHHHHhCCCCceeeeeeec
Q 012478 218 RKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALA---------S-KEEMKAFCEISPLVPKMANMLEG 287 (462)
Q Consensus 218 r~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~~~---------s-~eei~~i~~~v~~vP~~~N~l~~ 287 (462)
++.|-+..+....... ++|.+.+.+..-..+++ ++. + .+.++++.+..+..|+ ++.+
T Consensus 126 -~~~Gl~~~~~v~p~T~--------~e~l~~~~~~~~~~l~m-sv~~~~g~~~~~~~~~~i~~lr~~~~~~~i---~v~g 192 (244)
T PRK13125 126 -KNKGLKPVFFTSPKFP--------DLLIHRLSKLSPLFIYY-GLRPATGVPLPVSVERNIKRVRNLVGNKYL---VVGF 192 (244)
T ss_pred -HHcCCCEEEEECCCCC--------HHHHHHHHHhCCCEEEE-EeCCCCCCCchHHHHHHHHHHHHhcCCCCE---EEeC
Confidence 2335555554443221 34777788877777765 431 1 1244444444332332 2333
Q ss_pred CCC-CCCCCHHHHHhcCCCEEeccchHHH
Q 012478 288 GGK-TPILNPLELEELGFKLVAYPLSLIG 315 (462)
Q Consensus 288 ~g~-tP~ls~~eL~~lGv~~V~yp~~ll~ 315 (462)
|- ++ -+..++.+.|++.++.|..+++
T Consensus 193 -GI~~~-e~i~~~~~~gaD~vvvGSai~~ 219 (244)
T PRK13125 193 -GLDSP-EDARDALSAGADGVVVGTAFIE 219 (244)
T ss_pred -CcCCH-HHHHHHHHcCCCEEEECHHHHH
Confidence 43 33 2567778899999999988876
No 239
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=92.84 E-value=1.1 Score=43.15 Aligned_cols=91 Identities=15% Similarity=0.125 Sum_probs=58.1
Q ss_pred HHHHHhCCCceEecccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCC
Q 012478 81 LRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNG 160 (462)
Q Consensus 81 LR~ll~~~~~iv~p~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtG 160 (462)
++++.+.+...+++++++.--+..++++|++.+-++..+.. .....+.....+..+.+.+.+++||++.. |
T Consensus 115 i~~~~~~g~~~iiv~v~t~~ea~~a~~~G~d~i~~~~~g~t-------~~~~~~~~~~~~~l~~i~~~~~ipvia~G--G 185 (219)
T cd04729 115 IKRIHEEYNCLLMADISTLEEALNAAKLGFDIIGTTLSGYT-------EETAKTEDPDFELLKELRKALGIPVIAEG--R 185 (219)
T ss_pred HHHHHHHhCCeEEEECCCHHHHHHHHHcCCCEEEccCcccc-------ccccCCCCCCHHHHHHHHHhcCCCEEEeC--C
Confidence 33444444477788999998999999999998865422221 11101111123566677777789999853 5
Q ss_pred CCCHHHHHHHHHHHHHhCccEEEe
Q 012478 161 YGNAMNVKRTVKGYIKAGFAGIIL 184 (462)
Q Consensus 161 yG~~~nv~rtVk~l~~AGaaGI~I 184 (462)
..++.++ +++.++||+||.+
T Consensus 186 I~~~~~~----~~~l~~GadgV~v 205 (219)
T cd04729 186 INSPEQA----AKALELGADAVVV 205 (219)
T ss_pred CCCHHHH----HHHHHCCCCEEEE
Confidence 5565444 4666789999988
No 240
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=92.74 E-value=6 Score=40.48 Aligned_cols=104 Identities=22% Similarity=0.239 Sum_probs=64.1
Q ss_pred CCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHH
Q 012478 161 YGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLE 240 (462)
Q Consensus 161 yG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gld 240 (462)
|.+...+.+.++++++.||+-|=|-.+.. -.|-+.++.+|-.+|+.-++++.... .+..| --|....
T Consensus 34 ~~~~~~a~~~a~~~~~~GAdIIDIGgeST------rPg~~~v~~eeE~~Rv~pvI~~l~~~-~~~~I--SIDT~~~---- 100 (282)
T PRK11613 34 HNSLIDAVKHANLMINAGATIIDVGGEST------RPGAAEVSVEEELDRVIPVVEAIAQR-FEVWI--SVDTSKP---- 100 (282)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEECCCCC------CCCCCCCCHHHHHHHHHHHHHHHHhc-CCCeE--EEECCCH----
Confidence 55678888889999999999999966642 23445788888888888776665431 23333 3344432
Q ss_pred HHHHHHHHhHhcCCcEE-EecCCCCHHHHHHHHHhCCCCceee
Q 012478 241 ESLRRSRAFADAGADVL-FIDALASKEEMKAFCEISPLVPKMA 282 (462)
Q Consensus 241 eAI~RakAy~eAGAD~I-fie~~~s~eei~~i~~~v~~vP~~~ 282 (462)
+. +++..++|||+| =|.++.+. ++.++++... .|..+
T Consensus 101 ~v---a~~AL~~GadiINDI~g~~d~-~~~~~~a~~~-~~vVl 138 (282)
T PRK11613 101 EV---IRESAKAGAHIINDIRSLSEP-GALEAAAETG-LPVCL 138 (282)
T ss_pred HH---HHHHHHcCCCEEEECCCCCCH-HHHHHHHHcC-CCEEE
Confidence 22 334445799987 23466554 5444455442 34443
No 241
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=92.69 E-value=1 Score=46.42 Aligned_cols=99 Identities=15% Similarity=0.142 Sum_probs=58.2
Q ss_pred HHHHHHHhCC--CceEecccCChHHHHHHHHhCCcEEEec-cHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEE
Q 012478 79 KSLRQILELP--GVHQGPACFDALSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIG 155 (462)
Q Consensus 79 ~~LR~ll~~~--~~iv~p~ayDalSArl~e~aGfdaI~vS-G~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIa 155 (462)
+.++++.+.. -++++.++-+.-.|+.+.++|+|+|-++ |-+..+........+ .+.-..+..+...++..++|||+
T Consensus 124 ~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g-~p~~~~i~~v~~~~~~~~vpVIA 202 (325)
T cd00381 124 EMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGPGSICTTRIVTGVG-VPQATAVADVAAAARDYGVPVIA 202 (325)
T ss_pred HHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEECCCCCcCcccceeCCCC-CCHHHHHHHHHHHHhhcCCcEEe
Confidence 3455544433 2345578999999999999999999985 211111111111122 22223444455555666899997
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhCccEEEe
Q 012478 156 DGDNGYGNAMNVKRTVKGYIKAGFAGIIL 184 (462)
Q Consensus 156 D~DtGyG~~~nv~rtVk~l~~AGaaGI~I 184 (462)
| .|..+..++. +..++||++|.+
T Consensus 203 ~--GGI~~~~di~----kAla~GA~~Vmi 225 (325)
T cd00381 203 D--GGIRTSGDIV----KALAAGADAVML 225 (325)
T ss_pred c--CCCCCHHHHH----HHHHcCCCEEEe
Confidence 7 3444554444 333589999999
No 242
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=92.68 E-value=1.2 Score=42.20 Aligned_cols=145 Identities=20% Similarity=0.245 Sum_probs=84.2
Q ss_pred HHHHHHHHhCCCceEecccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHH------HHHHHHHhhcC-
Q 012478 78 AKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMV------DQGQLITQAVS- 150 (462)
Q Consensus 78 a~~LR~ll~~~~~iv~p~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml------~~~~~I~ra~~- 150 (462)
+.++.++.+.....++-+=-.....|.+++. |+++||... -++|+.|..++.=+.+. ..++++.+..+
T Consensus 5 t~~~v~~a~~~~~~i~~TRKt~Pg~r~l~~~---Av~~GGg~~--hR~gl~d~ili~~nHi~~~g~i~~av~~~~~~~~~ 79 (169)
T PF01729_consen 5 TRRMVDAAKGTKIRIADTRKTIPGLRPLEKY---AVLAGGGDN--HRLGLSDMILIKDNHIAFFGGIEEAVKAARQAAPE 79 (169)
T ss_dssp HHHHHHHTTTSSSEEEEGSGS-TTTHHHHHH---HHHHTTSBH--HHSSTTSSEEE-HHHHHHHSSHHHHHHHHHHHSTT
T ss_pred HHHHHHHhCCCCEEEeecCCCCcccCHHHHH---HHHhcCcee--EECCCCCcEEehHHHHHHhCCHHHHHHHHHHhCCC
Confidence 4566666665544555555556666777765 677776442 37899999887655432 23444444433
Q ss_pred C-cEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEE
Q 012478 151 I-PVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVA 229 (462)
Q Consensus 151 i-PVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiA 229 (462)
. +|.++.++ . +-+++..++|++.|.|+-- ++++ |+.+++..+..++...|.+
T Consensus 80 ~~~I~VEv~~----~----ee~~ea~~~g~d~I~lD~~---------------~~~~----~~~~v~~l~~~~~~v~ie~ 132 (169)
T PF01729_consen 80 KKKIEVEVEN----L----EEAEEALEAGADIIMLDNM---------------SPED----LKEAVEELRELNPRVKIEA 132 (169)
T ss_dssp TSEEEEEESS----H----HHHHHHHHTT-SEEEEES----------------CHHH----HHHHHHHHHHHTTTSEEEE
T ss_pred CceEEEEcCC----H----HHHHHHHHhCCCEEEecCc---------------CHHH----HHHHHHHHhhcCCcEEEEE
Confidence 4 49999886 2 2345667799999999432 2233 3333333333345544443
Q ss_pred ecchhhcccHHHHHHHHHHhHhcCCcEEEecCC
Q 012478 230 RTDSRQALSLEESLRRSRAFADAGADVLFIDAL 262 (462)
Q Consensus 230 RTDA~~~~gldeAI~RakAy~eAGAD~Ifie~~ 262 (462)
-- |+. +++...|++.|+|.|.+-++
T Consensus 133 SG------GI~--~~ni~~ya~~gvD~isvg~~ 157 (169)
T PF01729_consen 133 SG------GIT--LENIAEYAKTGVDVISVGSL 157 (169)
T ss_dssp ES------SSS--TTTHHHHHHTT-SEEEECHH
T ss_pred EC------CCC--HHHHHHHHhcCCCEEEcChh
Confidence 21 222 45789999999999998654
No 243
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=92.66 E-value=6.8 Score=40.75 Aligned_cols=135 Identities=18% Similarity=0.175 Sum_probs=73.4
Q ss_pred HHHHHHHHHhCccEEEeCCCC--------CC---CCCCCCCCCcccCHHHHH-HHHHHHHHHHHhhCCCeEEEEecchh-
Q 012478 168 KRTVKGYIKAGFAGIILEDQV--------SP---KGCGHTRGRKVVSREEAV-MRIKAAVDARKESGSDIVIVARTDSR- 234 (462)
Q Consensus 168 ~rtVk~l~~AGaaGI~IEDq~--------~P---KrCGH~~gk~Lvp~ee~~-~kI~AA~~Ar~~~g~d~vIiARTDA~- 234 (462)
.+.++...++|++||.|--.- .| ||...-+|- +-..-.++ +-|++++++. ++.|.-|.-..
T Consensus 145 ~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGs-lenR~Rf~~eii~~ir~~~-----~~~v~vRis~~d 218 (337)
T PRK13523 145 KQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGS-PENRYRFLREIIDAVKEVW-----DGPLFVRISASD 218 (337)
T ss_pred HHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCC-HHHHHHHHHHHHHHHHHhc-----CCCeEEEecccc
Confidence 345677778999999996552 12 555444442 33222222 2333333332 34455554431
Q ss_pred -h--cccHHHHHHHHHHhHhcCCcEEEecCCC------------CHHHHHHHHHhCCCCceeeeeeecCC-CCCCCCHHH
Q 012478 235 -Q--ALSLEESLRRSRAFADAGADVLFIDALA------------SKEEMKAFCEISPLVPKMANMLEGGG-KTPILNPLE 298 (462)
Q Consensus 235 -~--~~gldeAI~RakAy~eAGAD~Ifie~~~------------s~eei~~i~~~v~~vP~~~N~l~~~g-~tP~ls~~e 298 (462)
. ...++|+++=++.++++|+|.|-+.+-. ..+..+++.+.+. +|++.| ++ .+|. ..++
T Consensus 219 ~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~-ipVi~~----G~i~~~~-~a~~ 292 (337)
T PRK13523 219 YHPGGLTVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHAN-IATGAV----GLITSGA-QAEE 292 (337)
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhcC-CcEEEe----CCCCCHH-HHHH
Confidence 1 2357999999999999999999775421 1234455555554 565543 22 1221 1333
Q ss_pred HHh-cCCCEEeccchHH
Q 012478 299 LEE-LGFKLVAYPLSLI 314 (462)
Q Consensus 299 L~~-lGv~~V~yp~~ll 314 (462)
+-+ -++.+|.++-.++
T Consensus 293 ~l~~g~~D~V~~gR~~i 309 (337)
T PRK13523 293 ILQNNRADLIFIGRELL 309 (337)
T ss_pred HHHcCCCChHHhhHHHH
Confidence 333 3477776655443
No 244
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=92.62 E-value=1.1 Score=43.09 Aligned_cols=95 Identities=17% Similarity=0.160 Sum_probs=62.0
Q ss_pred HHHHHHHHhC-CCceEecccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEe
Q 012478 78 AKSLRQILEL-PGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGD 156 (462)
Q Consensus 78 a~~LR~ll~~-~~~iv~p~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD 156 (462)
...+.+..++ .+..+++++++.--++.++++|++.+.++..+.. +.+. .........++++...+++||++.
T Consensus 107 ~~~~i~~~~~~~~i~vi~~v~t~ee~~~a~~~G~d~i~~~~~g~t----~~~~---~~~~~~~~~i~~i~~~~~iPvia~ 179 (221)
T PRK01130 107 LAELVKRIKEYPGQLLMADCSTLEEGLAAQKLGFDFIGTTLSGYT----EETK---KPEEPDFALLKELLKAVGCPVIAE 179 (221)
T ss_pred HHHHHHHHHhCCCCeEEEeCCCHHHHHHHHHcCCCEEEcCCceee----cCCC---CCCCcCHHHHHHHHHhCCCCEEEE
Confidence 3445555555 6677788899888889999999999876532221 1111 111112456677777778999984
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCccEEEeC
Q 012478 157 GDNGYGNAMNVKRTVKGYIKAGFAGIILE 185 (462)
Q Consensus 157 ~DtGyG~~~nv~rtVk~l~~AGaaGI~IE 185 (462)
.|..++.++. ++.++||+||.+=
T Consensus 180 --GGI~t~~~~~----~~l~~GadgV~iG 202 (221)
T PRK01130 180 --GRINTPEQAK----KALELGAHAVVVG 202 (221)
T ss_pred --CCCCCHHHHH----HHHHCCCCEEEEc
Confidence 4555665544 5667899999883
No 245
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=92.61 E-value=5.7 Score=37.06 Aligned_cols=125 Identities=30% Similarity=0.396 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHH
Q 012478 135 YGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAA 214 (462)
Q Consensus 135 l~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA 214 (462)
+.+.+.....+++..+.|++++- . ++...+.|++|||+..... +..+.
T Consensus 41 ~~~~a~~l~~~~~~~~~~liin~-----~-------~~la~~~~~dGvHl~~~~~-------------~~~~~------- 88 (180)
T PF02581_consen 41 LLELARRLAELCQKYGVPLIIND-----R-------VDLALELGADGVHLGQSDL-------------PPAEA------- 88 (180)
T ss_dssp HHHHHHHHHHHHHHTTGCEEEES-------------HHHHHHCT-SEEEEBTTSS-------------SHHHH-------
T ss_pred HHHHHHHHHHHhhcceEEEEecC-----C-------HHHHHhcCCCEEEeccccc-------------chHHh-------
Confidence 34444455555666688999873 2 2344568999999965421 22221
Q ss_pred HHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEecCC-----------CCHHHHHHHHHhCCCCceeee
Q 012478 215 VDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDAL-----------ASKEEMKAFCEISPLVPKMAN 283 (462)
Q Consensus 215 ~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~~-----------~s~eei~~i~~~v~~vP~~~N 283 (462)
+..++++. +++.+ .+..+| ++...+.|||.+++-.+ ...+.++++++..+ +|+.
T Consensus 89 ---r~~~~~~~-~ig~S----~h~~~e----~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~-~pv~-- 153 (180)
T PF02581_consen 89 ---RKLLGPDK-IIGAS----CHSLEE----AREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARASP-IPVY-- 153 (180)
T ss_dssp ---HHHHTTTS-EEEEE----ESSHHH----HHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHTS-SCEE--
T ss_pred ---hhhcccce-EEEee----cCcHHH----HHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHHhCC-CCEE--
Confidence 11123444 44443 234454 45555899999998544 13678888888776 4543
Q ss_pred eeecCCCCCCCCHHHHHhcCCCEEec
Q 012478 284 MLEGGGKTPILNPLELEELGFKLVAY 309 (462)
Q Consensus 284 ~l~~~g~tP~ls~~eL~~lGv~~V~y 309 (462)
.-||-+| -+..++.++|+.-|..
T Consensus 154 --AlGGI~~-~~i~~l~~~Ga~gvAv 176 (180)
T PF02581_consen 154 --ALGGITP-ENIPELREAGADGVAV 176 (180)
T ss_dssp --EESS--T-TTHHHHHHTT-SEEEE
T ss_pred --EEcCCCH-HHHHHHHHcCCCEEEE
Confidence 2245554 4789999999987743
No 246
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=92.60 E-value=14 Score=39.39 Aligned_cols=143 Identities=15% Similarity=0.159 Sum_probs=81.6
Q ss_pred HHHHHHHHHhhcC-CcEEEeCCC-CCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHH
Q 012478 138 MVDQGQLITQAVS-IPVIGDGDN-GYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAV 215 (462)
Q Consensus 138 ml~~~~~I~ra~~-iPVIaD~Dt-GyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~ 215 (462)
-...++.|++... ..++.|+-. +-|+ .-++.+.++|+.+||+-++. + .+...+-++.++
T Consensus 44 ~~~~i~~l~~~~~~~~ii~D~kl~d~g~-----~~v~~a~~aGAdgV~v~g~~------~--------~~~~~~~i~~a~ 104 (430)
T PRK07028 44 GMNAIRTLRKNFPDHTIVADMKTMDTGA-----IEVEMAAKAGADIVCILGLA------D--------DSTIEDAVRAAR 104 (430)
T ss_pred hHHHHHHHHHHCCCCEEEEEeeeccchH-----HHHHHHHHcCCCEEEEecCC------C--------hHHHHHHHHHHH
Confidence 3567777777654 456777333 1121 25678889999999986542 0 011111222222
Q ss_pred HHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEecC--------CCCHHHHHHHHHhCCCCceeeeeeec
Q 012478 216 DARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDA--------LASKEEMKAFCEISPLVPKMANMLEG 287 (462)
Q Consensus 216 ~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~--------~~s~eei~~i~~~v~~vP~~~N~l~~ 287 (462)
+.|..+.+-.-+- ...+++++.+.++|+|.|.+.. ....+.++++.+.++ +|+.+ .
T Consensus 105 ----~~G~~~~~g~~s~-------~t~~e~~~~a~~~GaD~I~~~pg~~~~~~~~~~~~~l~~l~~~~~-iPI~a---~- 168 (430)
T PRK07028 105 ----KYGVRLMADLINV-------PDPVKRAVELEELGVDYINVHVGIDQQMLGKDPLELLKEVSEEVS-IPIAV---A- 168 (430)
T ss_pred ----HcCCEEEEEecCC-------CCHHHHHHHHHhcCCCEEEEEeccchhhcCCChHHHHHHHHhhCC-CcEEE---E-
Confidence 2343333311111 1124578888899999986532 122467777776654 45432 2
Q ss_pred CCCCCCCCHHHHHhcCCCEEeccchHHHH
Q 012478 288 GGKTPILNPLELEELGFKLVAYPLSLIGV 316 (462)
Q Consensus 288 ~g~tP~ls~~eL~~lGv~~V~yp~~ll~a 316 (462)
+|-++ -...++.+.|+..++.+..++.+
T Consensus 169 GGI~~-~n~~~~l~aGAdgv~vGsaI~~~ 196 (430)
T PRK07028 169 GGLDA-ETAAKAVAAGADIVIVGGNIIKS 196 (430)
T ss_pred CCCCH-HHHHHHHHcCCCEEEEChHHcCC
Confidence 34332 24677888999999999888754
No 247
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=92.56 E-value=4.6 Score=42.43 Aligned_cols=132 Identities=22% Similarity=0.221 Sum_probs=80.1
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHH
Q 012478 134 SYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKA 213 (462)
Q Consensus 134 sl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~A 213 (462)
.+.++......+++..++++|++-+ +....+.|++|||+..+. .|..+
T Consensus 185 ~~~~~a~~L~~l~~~~~~~lIIND~------------vdlAl~~~aDGVHLgq~d-------------l~~~~------- 232 (347)
T PRK02615 185 QRLEEAKKLKELCHRYGALFIVNDR------------VDIALAVDADGVHLGQED-------------LPLAV------- 232 (347)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEeCh------------HHHHHHcCCCEEEeChhh-------------cCHHH-------
Confidence 3445566667777777889888721 233445899999994331 12221
Q ss_pred HHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEecCC-----------CCHHHHHHHHHhCCCCceee
Q 012478 214 AVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDAL-----------ASKEEMKAFCEISPLVPKMA 282 (462)
Q Consensus 214 A~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~~-----------~s~eei~~i~~~v~~vP~~~ 282 (462)
++.-+|++ .+++++-. ..+| ++...+.|||.|++-.+ ...+.++.+++..+ +|.+
T Consensus 233 ---aR~llg~~-~iIG~S~H----s~~e----~~~A~~~GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~~-iPv~- 298 (347)
T PRK02615 233 ---ARQLLGPE-KIIGRSTT----NPEE----MAKAIAEGADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEAP-IPWF- 298 (347)
T ss_pred ---HHHhcCCC-CEEEEecC----CHHH----HHHHHHcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCC-CCEE-
Confidence 12223444 45666532 3343 44455789999986321 22577888877654 4533
Q ss_pred eeeecCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 012478 283 NMLEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (462)
Q Consensus 283 N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~ll~ 315 (462)
.-||-++ -+..++.+.|+..|.....++.
T Consensus 299 ---AiGGI~~-~ni~~l~~~Ga~gVAvisaI~~ 327 (347)
T PRK02615 299 ---AIGGIDK-SNIPEVLQAGAKRVAVVRAIMG 327 (347)
T ss_pred ---EECCCCH-HHHHHHHHcCCcEEEEeHHHhC
Confidence 2245443 3678899999999988777664
No 248
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=92.49 E-value=2.2 Score=42.92 Aligned_cols=129 Identities=11% Similarity=0.020 Sum_probs=82.2
Q ss_pred HHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecch----hhcccHHHHHHHH
Q 012478 171 VKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDS----RQALSLEESLRRS 246 (462)
Q Consensus 171 Vk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA----~~~~gldeAI~Ra 246 (462)
+...+++||+=|-|=+.. .---+.|.-..+.. +++.. +.+..++-|--. +....++...+.+
T Consensus 14 a~~A~~~GAdRiELc~~L--------~~GGlTPS~g~i~~---~~~~~---~ipv~vMIRPR~gdF~Ys~~E~~~M~~di 79 (248)
T PRK11572 14 ALTAQQAGADRIELCAAP--------KEGGLTPSLGVLKS---VRERV---TIPVHPIIRPRGGDFCYSDGEFAAMLEDI 79 (248)
T ss_pred HHHHHHcCCCEEEEccCc--------CCCCcCCCHHHHHH---HHHhc---CCCeEEEEecCCCCCCCCHHHHHHHHHHH
Confidence 445667899999884442 21125665444443 44332 346677777543 2234578889999
Q ss_pred HHhHhcCCcEEEecCC-----CCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcCCCEEeccchH
Q 012478 247 RAFADAGADVLFIDAL-----ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSL 313 (462)
Q Consensus 247 kAy~eAGAD~Ifie~~-----~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~l 313 (462)
+.+.++|||.+++-.+ -+.+.++++.+...+.|..+.+--.--.-|.-..++|.++||.+|+-....
T Consensus 80 ~~~~~~GadGvV~G~L~~dg~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~lG~~rILTSGg~ 151 (248)
T PRK11572 80 ATVRELGFPGLVTGVLDVDGHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLADLGVARILTSGQQ 151 (248)
T ss_pred HHHHHcCCCEEEEeeECCCCCcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHHcCCCEEECCCCC
Confidence 9999999999998655 357788888887655555544321101112225788999999999985543
No 249
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=92.46 E-value=12 Score=36.93 Aligned_cols=175 Identities=20% Similarity=0.241 Sum_probs=99.2
Q ss_pred HHHHHHhCCcEEEeccHHHHhhhccCCCCC------------CCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHH-H--
Q 012478 102 AKLVEKSGFSFCFTSGFSISAARLALPDTG------------FISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAM-N-- 166 (462)
Q Consensus 102 Arl~e~aGfdaI~vSG~avSas~lG~PD~g------------~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~-n-- 166 (462)
++.++++|+|++=++= -. +-.+-|.. .++++..++.++.+.+.+++|++. .+|-|+. .
T Consensus 20 ~~~l~~~Gad~iel~i-Pf---sdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~l---m~y~n~~~~~G 92 (242)
T cd04724 20 LKALVEAGADIIELGI-PF---SDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVL---MGYYNPILQYG 92 (242)
T ss_pred HHHHHHCCCCEEEECC-CC---CCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEE---EEecCHHHHhC
Confidence 4667778888887760 00 01222322 244667888888888777889653 1454541 1
Q ss_pred HHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEE-EEecchhhcccHHHHHHH
Q 012478 167 VKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVI-VARTDSRQALSLEESLRR 245 (462)
Q Consensus 167 v~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vI-iARTDA~~~~gldeAI~R 245 (462)
+.+.++.+.++|++||.+=|- |.||...-++.+++. |.+.++ ++-+-. .+|
T Consensus 93 ~~~fi~~~~~aG~~giiipDl---------------~~ee~~~~~~~~~~~----g~~~i~~i~P~T~---------~~~ 144 (242)
T cd04724 93 LERFLRDAKEAGVDGLIIPDL---------------PPEEAEEFREAAKEY----GLDLIFLVAPTTP---------DER 144 (242)
T ss_pred HHHHHHHHHHCCCcEEEECCC---------------CHHHHHHHHHHHHHc----CCcEEEEeCCCCC---------HHH
Confidence 456688999999999999774 234433333333333 443333 333211 346
Q ss_pred HHHhHhcCCcEEEecC---C---CC------HHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcCCCEEeccchH
Q 012478 246 SRAFADAGADVLFIDA---L---AS------KEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSL 313 (462)
Q Consensus 246 akAy~eAGAD~Ifie~---~---~s------~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~l 313 (462)
.+.+.+...|.|++-+ . ++ .+.++++.+. ..+|+.+ . +|-...-+.+++.++ +..++.|+.+
T Consensus 145 i~~i~~~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~-~~~pI~v---g-gGI~~~e~~~~~~~~-ADgvVvGSai 218 (242)
T cd04724 145 IKKIAELASGFIYYVSRTGVTGARTELPDDLKELIKRIRKY-TDLPIAV---G-FGISTPEQAAEVAKY-ADGVIVGSAL 218 (242)
T ss_pred HHHHHhhCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhc-CCCcEEE---E-ccCCCHHHHHHHHcc-CCEEEECHHH
Confidence 7777775667666522 1 11 1344445443 2345432 3 343221256788888 9999999876
Q ss_pred HHHH
Q 012478 314 IGVS 317 (462)
Q Consensus 314 l~aa 317 (462)
++..
T Consensus 219 v~~~ 222 (242)
T cd04724 219 VKII 222 (242)
T ss_pred HHHH
Confidence 6543
No 250
>cd03329 MR_like_4 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 4. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=92.45 E-value=4.7 Score=41.91 Aligned_cols=101 Identities=17% Similarity=0.196 Sum_probs=70.1
Q ss_pred CCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHH
Q 012478 161 YGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLE 240 (462)
Q Consensus 161 yG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gld 240 (462)
+.++....+.++++.+.|..++||- +|.. . ..++-+++|++++++. |+++.|. -|+-....++
T Consensus 141 ~~~~~~~~~~a~~~~~~Gf~~~Kik-------~~~~--~---~~~~di~~i~~vR~~~---G~~~~l~--vDan~~~~~~ 203 (368)
T cd03329 141 LESPEAYADFAEECKALGYRAIKLH-------PWGP--G---VVRRDLKACLAVREAV---GPDMRLM--HDGAHWYSRA 203 (368)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEe-------cCCc--h---hHHHHHHHHHHHHHHh---CCCCeEE--EECCCCcCHH
Confidence 3467777888888889999999992 1210 0 1244577888877663 6677664 3776777899
Q ss_pred HHHHHHHHhHhcCCcEEEecCCC---CHHHHHHHHHhCCCCcee
Q 012478 241 ESLRRSRAFADAGADVLFIDALA---SKEEMKAFCEISPLVPKM 281 (462)
Q Consensus 241 eAI~RakAy~eAGAD~Ifie~~~---s~eei~~i~~~v~~vP~~ 281 (462)
+|++.++++++.+ ..|+|-+- +.+.++++.+..+ +|+.
T Consensus 204 ~A~~~~~~l~~~~--l~~iEeP~~~~d~~~~~~l~~~~~-ipIa 244 (368)
T cd03329 204 DALRLGRALEELG--FFWYEDPLREASISSYRWLAEKLD-IPIL 244 (368)
T ss_pred HHHHHHHHhhhcC--CCeEeCCCCchhHHHHHHHHhcCC-CCEE
Confidence 9999999998875 55777653 4567777777654 5653
No 251
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=92.45 E-value=2.5 Score=48.38 Aligned_cols=139 Identities=14% Similarity=0.130 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhCccEEEeCCCC--------C---CCCCCCCCCCcccCH-HHHHHHHHHHHHHHHhhCCCeEEEEecchh
Q 012478 167 VKRTVKGYIKAGFAGIILEDQV--------S---PKGCGHTRGRKVVSR-EEAVMRIKAAVDARKESGSDIVIVARTDSR 234 (462)
Q Consensus 167 v~rtVk~l~~AGaaGI~IEDq~--------~---PKrCGH~~gk~Lvp~-ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~ 234 (462)
..+++++..++|++||.|--.- . .||...-+| .+-.. .-..+-|++++++ .|+||.|-.|..+.
T Consensus 553 f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGG-slenR~r~~~eiv~~ir~~---~~~~~~v~~ri~~~ 628 (765)
T PRK08255 553 FVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGG-SLENRLRYPLEVFRAVRAV---WPAEKPMSVRISAH 628 (765)
T ss_pred HHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCC-CHHHHhHHHHHHHHHHHHh---cCCCCeeEEEEccc
Confidence 3455677788999999996541 1 244433333 22111 1122223333332 25688888886542
Q ss_pred ----hcccHHHHHHHHHHhHhcCCcEEEecCCC-------------CHHHHHHHHHhCCCCceeeeeeecCCC-CCCCCH
Q 012478 235 ----QALSLEESLRRSRAFADAGADVLFIDALA-------------SKEEMKAFCEISPLVPKMANMLEGGGK-TPILNP 296 (462)
Q Consensus 235 ----~~~gldeAI~RakAy~eAGAD~Ifie~~~-------------s~eei~~i~~~v~~vP~~~N~l~~~g~-tP~ls~ 296 (462)
....++|+++-++.++++|+|.|-|.+-. ..+..+++.+.+. +|++.| |+- +|. ..
T Consensus 629 ~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~ik~~~~-~pv~~~----G~i~~~~-~a 702 (765)
T PRK08255 629 DWVEGGNTPDDAVEIARAFKAAGADLIDVSSGQVSKDEKPVYGRMYQTPFADRIRNEAG-IATIAV----GAISEAD-HV 702 (765)
T ss_pred cccCCCCCHHHHHHHHHHHHhcCCcEEEeCCCCCCcCCCCCcCccccHHHHHHHHHHcC-CEEEEe----CCCCCHH-HH
Confidence 12357999999999999999999885311 1233344555554 565543 221 221 12
Q ss_pred HH-HHhcCCCEEeccchHHH
Q 012478 297 LE-LEELGFKLVAYPLSLIG 315 (462)
Q Consensus 297 ~e-L~~lGv~~V~yp~~ll~ 315 (462)
++ |++-++.+|.++-.++.
T Consensus 703 ~~~l~~g~~D~v~~gR~~l~ 722 (765)
T PRK08255 703 NSIIAAGRADLCALARPHLA 722 (765)
T ss_pred HHHHHcCCcceeeEcHHHHh
Confidence 33 44445888887766554
No 252
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=92.43 E-value=6.1 Score=41.06 Aligned_cols=156 Identities=15% Similarity=0.054 Sum_probs=86.5
Q ss_pred HHHHHHHHhCCcEEEec---cHHHHhhhc----cCCCCCCCCHHH----HHHHHHHHHhhcCCcEEE-----eCCCCCC-
Q 012478 100 LSAKLVEKSGFSFCFTS---GFSISAARL----ALPDTGFISYGE----MVDQGQLITQAVSIPVIG-----DGDNGYG- 162 (462)
Q Consensus 100 lSArl~e~aGfdaI~vS---G~avSas~l----G~PD~g~vsl~E----ml~~~~~I~ra~~iPVIa-----D~DtGyG- 162 (462)
-.|+.+.++|||.|-+- |+-+.-..- =..|.--=+++. +++.++.|.++++.||.+ |...| |
T Consensus 146 ~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~-G~ 224 (337)
T PRK13523 146 QAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPG-GL 224 (337)
T ss_pred HHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCC-CC
Confidence 57788999999999876 444432111 122321113442 233455555555677665 22222 3
Q ss_pred CHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCC-CCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHH
Q 012478 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGH-TRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEE 241 (462)
Q Consensus 163 ~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH-~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~glde 241 (462)
+.++..+.++.++++|++.|+|-.....+.... ..|. .-+++++|+.++ +..++.+++-..
T Consensus 225 ~~~e~~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~----~~~~~~~ik~~~------~ipVi~~G~i~~-------- 286 (337)
T PRK13523 225 TVQDYVQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGY----QVPFAEHIREHA------NIATGAVGLITS-------- 286 (337)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccc----cHHHHHHHHhhc------CCcEEEeCCCCC--------
Confidence 357788899999999999999966543211111 1111 123444544331 234555565322
Q ss_pred HHHHHHHhHhcC-CcEEEec--CCCCHHHHHHHHHhC
Q 012478 242 SLRRSRAFADAG-ADVLFID--ALASKEEMKAFCEIS 275 (462)
Q Consensus 242 AI~RakAy~eAG-AD~Ifie--~~~s~eei~~i~~~v 275 (462)
.+.+..+.+.| ||+|.+- .+.+++..+++.+.+
T Consensus 287 -~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k~~~~~ 322 (337)
T PRK13523 287 -GAQAEEILQNNRADLIFIGRELLRNPYFPRIAAKEL 322 (337)
T ss_pred -HHHHHHHHHcCCCChHHhhHHHHhCccHHHHHHHHc
Confidence 12455566665 9999873 346667777776654
No 253
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=92.40 E-value=4.6 Score=42.00 Aligned_cols=171 Identities=16% Similarity=0.180 Sum_probs=103.0
Q ss_pred EecccCChHHHHHH------HHhCCcEEEeccHHHHhhhccCCC-C-CCCCHH---HHHHHHHHHHhhc-CCcEEEeC--
Q 012478 92 QGPACFDALSAKLV------EKSGFSFCFTSGFSISAARLALPD-T-GFISYG---EMVDQGQLITQAV-SIPVIGDG-- 157 (462)
Q Consensus 92 v~p~ayDalSArl~------e~aGfdaI~vSG~avSas~lG~PD-~-g~vsl~---Eml~~~~~I~ra~-~iPVIaD~-- 157 (462)
.|||.|=..--+++ .+.|.+++.+=|..- .-..| . +.-.++ =+.+.++.|.+.. ++-||+|.
T Consensus 41 smPG~~r~s~d~l~~~~~~~~~~Gi~~v~LFgv~~----~~~Kd~~~gs~a~~~~g~v~~air~iK~~~pdl~vi~Dvcl 116 (320)
T cd04824 41 SLPGINRYGVNRLEEFLRPLVAKGLRSVILFGVPL----KPGKDDRSGSAADDEDGPVIQAIKLIREEFPELLIACDVCL 116 (320)
T ss_pred CCCCceeeCHHHHHHHHHHHHHCCCCEEEEeCCCc----cccCCcCccccccCCCChHHHHHHHHHHhCCCcEEEEeeec
Confidence 46666644333333 346888887654310 00111 1 222222 1345567776665 47788884
Q ss_pred ----CCCC-------C---CHHH---HHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHh
Q 012478 158 ----DNGY-------G---NAMN---VKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKE 220 (462)
Q Consensus 158 ----DtGy-------G---~~~n---v~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~ 220 (462)
++|+ | |... ..+..-.+.+|||+-|-=-|- |+ .||.|++++.++
T Consensus 117 c~YT~hGHcGil~~~g~vdND~Tl~~L~k~Avs~A~AGADiVAPSdM--------MD-----------GrV~aIR~aLD~ 177 (320)
T cd04824 117 CEYTSHGHCGILYEDGTINNEASVKRLAEVALAYAKAGAHIVAPSDM--------MD-----------GRVRAIKQALIQ 177 (320)
T ss_pred cCCCCCCcceeECCCCcCcCHHHHHHHHHHHHHHHHhCCCEEecccc--------cc-----------cHHHHHHHHHHH
Confidence 2232 1 3333 334444566899987765543 33 366666666665
Q ss_pred hCC--CeEEEEecchhhc--------------------------ccHHHHHHHHHHhHhcCCcEEEe-cCCCCHHHHHHH
Q 012478 221 SGS--DIVIVARTDSRQA--------------------------LSLEESLRRSRAFADAGADVLFI-DALASKEEMKAF 271 (462)
Q Consensus 221 ~g~--d~vIiARTDA~~~--------------------------~gldeAI~RakAy~eAGAD~Ifi-e~~~s~eei~~i 271 (462)
.|- +.-|+.-+--++. ..-.||++.+..=.+-|||+|+| |+++..+.++++
T Consensus 178 ~G~~~~v~ImSYsaKyaS~fYGPFRdAa~Sap~~gDRksYQmdp~n~~eAlre~~~D~~EGAD~lMVKPal~YLDIi~~~ 257 (320)
T cd04824 178 AGLGNKVSVMSYSAKFASCLYGPFRDAACSAPSFGDRRCYQLPPGARGLALRAVERDVSEGADMIMVKPGTPYLDIVREA 257 (320)
T ss_pred CCCccCCeeeehHHHhhhhccchHHHHhcCCCCCCCccccCCCCcCHHHHHHHHHhhHHhCCCEEEEcCCchHHHHHHHH
Confidence 443 5677766533210 12578999999999999999999 788999999999
Q ss_pred HHhCCCCceeeeee
Q 012478 272 CEISPLVPKMANML 285 (462)
Q Consensus 272 ~~~v~~vP~~~N~l 285 (462)
.+.+|.+|+.+=.+
T Consensus 258 k~~~~~~PvaaYqV 271 (320)
T cd04824 258 KDKHPDLPLAVYHV 271 (320)
T ss_pred HHhccCCCEEEEEc
Confidence 99996678754433
No 254
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=92.34 E-value=0.63 Score=48.34 Aligned_cols=85 Identities=13% Similarity=0.117 Sum_probs=54.9
Q ss_pred CCc-eEecccCChHHHHHHHHhCCcEEEec-cHHHHh-h----hccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCC
Q 012478 88 PGV-HQGPACFDALSAKLVEKSGFSFCFTS-GFSISA-A----RLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNG 160 (462)
Q Consensus 88 ~~~-iv~p~ayDalSArl~e~aGfdaI~vS-G~avSa-s----~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtG 160 (462)
+.+ ++..++-+.-.|+.+.++|+++|.+| |.+-.+ + ..|.|+- .+..+..++.+.++|||+|.---
T Consensus 136 p~~~vi~GnV~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~-------~l~ai~ev~~a~~~pVIadGGIr 208 (321)
T TIGR01306 136 PDSFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGW-------QLAALRWCAKAARKPIIADGGIR 208 (321)
T ss_pred CCCEEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCch-------HHHHHHHHHHhcCCeEEEECCcC
Confidence 345 45556999999999999999999999 433221 1 1233321 23455566667789999995433
Q ss_pred CCCHHHHHHHHHHHHHhCccEEEeC
Q 012478 161 YGNAMNVKRTVKGYIKAGFAGIILE 185 (462)
Q Consensus 161 yG~~~nv~rtVk~l~~AGaaGI~IE 185 (462)
+| .++. |.+ .+||++|.+=
T Consensus 209 ~~--~Di~---KAL-a~GAd~Vmig 227 (321)
T TIGR01306 209 TH--GDIA---KSI-RFGASMVMIG 227 (321)
T ss_pred cH--HHHH---HHH-HcCCCEEeec
Confidence 32 2333 333 4799999983
No 255
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=92.29 E-value=4.4 Score=43.13 Aligned_cols=119 Identities=9% Similarity=0.121 Sum_probs=74.3
Q ss_pred ccCCCCCCC---CHHHHHHHHHHHHhhc-CCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCC--
Q 012478 125 LALPDTGFI---SYGEMVDQGQLITQAV-SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRG-- 198 (462)
Q Consensus 125 lG~PD~g~v---sl~Eml~~~~~I~ra~-~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~g-- 198 (462)
.|++-.+++ +++.++++.+++.+.. ++|||+-+=.++ +.....+.+++++++||++|-|-=. |-|..+
T Consensus 84 iGl~N~~~~s~~g~~~~l~~i~~~k~~~~~~pvIaSi~~~~-s~~~~~~~a~~~e~~GaD~iELNiS-----CPn~~~~r 157 (385)
T PLN02495 84 IGWQNIELISDRPFETMLAEFKQLKEEYPDRILIASIMEEY-NKDAWEEIIERVEETGVDALEINFS-----CPHGMPER 157 (385)
T ss_pred ccccCcccccccCHHHHHHHHHHHHhhCCCCcEEEEccCCC-CHHHHHHHHHHHHhcCCCEEEEECC-----CCCCCCcC
Confidence 577666544 5889999888876665 689999975544 4667788889999999999987543 444321
Q ss_pred ---Cc-ccCHHHHHHHH-HHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEe
Q 012478 199 ---RK-VVSREEAVMRI-KAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFI 259 (462)
Q Consensus 199 ---k~-Lvp~ee~~~kI-~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifi 259 (462)
-. .... |.+..| ++++.+.+ .+ |+.+-- ..+++...-+++..++|||.|.+
T Consensus 158 ~~g~~~gq~~-e~~~~i~~~Vk~~~~---iP--v~vKLs----Pn~t~i~~ia~aa~~~Gadgi~l 213 (385)
T PLN02495 158 KMGAAVGQDC-DLLEEVCGWINAKAT---VP--VWAKMT----PNITDITQPARVALKSGCEGVAA 213 (385)
T ss_pred ccchhhccCH-HHHHHHHHHHHHhhc---Cc--eEEEeC----CChhhHHHHHHHHHHhCCCEEEE
Confidence 11 1223 344444 33333321 22 333311 12344556788888999999875
No 256
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=92.29 E-value=0.61 Score=51.10 Aligned_cols=94 Identities=17% Similarity=0.235 Sum_probs=59.4
Q ss_pred HHHHHHHhC-CCc-eEecccCChHHHHHHHHhCCcEEEec-cHHHHhhh-----ccCCCCCCCCHHHHHHHHHHHHhhcC
Q 012478 79 KSLRQILEL-PGV-HQGPACFDALSAKLVEKSGFSFCFTS-GFSISAAR-----LALPDTGFISYGEMVDQGQLITQAVS 150 (462)
Q Consensus 79 ~~LR~ll~~-~~~-iv~p~ayDalSArl~e~aGfdaI~vS-G~avSas~-----lG~PD~g~vsl~Eml~~~~~I~ra~~ 150 (462)
..++++.+. ++. +++-|+-+.--|+.+.++|+|+|.+| |-+..+.. .|.|- ..-+..+..+++..+
T Consensus 278 ~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~~~~~g~~~------~~~i~~~~~~~~~~~ 351 (505)
T PLN02274 278 EMIKYIKKTYPELDVIGGNVVTMYQAQNLIQAGVDGLRVGMGSGSICTTQEVCAVGRGQ------ATAVYKVASIAAQHG 351 (505)
T ss_pred HHHHHHHHhCCCCcEEEecCCCHHHHHHHHHcCcCEEEECCCCCccccCccccccCCCc------ccHHHHHHHHHHhcC
Confidence 345554443 334 44558999999999999999999987 22221111 13332 223445666777788
Q ss_pred CcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEe
Q 012478 151 IPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIIL 184 (462)
Q Consensus 151 iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~I 184 (462)
+|||+|. |+.++.++. +...+||.+|.+
T Consensus 352 vpVIadG--GI~~~~di~----kAla~GA~~V~v 379 (505)
T PLN02274 352 VPVIADG--GISNSGHIV----KALTLGASTVMM 379 (505)
T ss_pred CeEEEeC--CCCCHHHHH----HHHHcCCCEEEE
Confidence 9999984 344444444 344689999998
No 257
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=92.28 E-value=5.2 Score=41.41 Aligned_cols=78 Identities=19% Similarity=0.234 Sum_probs=54.8
Q ss_pred HHHHHHHhCCcEEEec-cHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHHhCc
Q 012478 101 SAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGF 179 (462)
Q Consensus 101 SArl~e~aGfdaI~vS-G~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~AGa 179 (462)
-.+.++..+.+++-+. ...- -...|. +.-+++..++.++.|++.+++||++=. .|+|. ..+.++.++++|+
T Consensus 133 ~~~~i~~i~adal~i~ln~~q---~~~~p~-g~~~f~~~le~i~~i~~~~~vPVivK~-~g~g~---~~~~a~~L~~aGv 204 (333)
T TIGR02151 133 AQEAIDMIEADALAIHLNVLQ---ELVQPE-GDRNFKGWLEKIAEICSQLSVPVIVKE-VGFGI---SKEVAKLLADAGV 204 (333)
T ss_pred HHHHHHHhcCCCEEEcCcccc---cccCCC-CCcCHHHHHHHHHHHHHhcCCCEEEEe-cCCCC---CHHHHHHHHHcCC
Confidence 4466677777777764 2111 123444 224577788999999999999999873 46764 3577789999999
Q ss_pred cEEEeCC
Q 012478 180 AGIILED 186 (462)
Q Consensus 180 aGI~IED 186 (462)
++|.+-.
T Consensus 205 d~I~Vsg 211 (333)
T TIGR02151 205 SAIDVAG 211 (333)
T ss_pred CEEEECC
Confidence 9999954
No 258
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=92.24 E-value=6.8 Score=39.48 Aligned_cols=128 Identities=23% Similarity=0.267 Sum_probs=89.8
Q ss_pred CCCCHHHHHHHHHHHHH-hCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhccc
Q 012478 160 GYGNAMNVKRTVKGYIK-AGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALS 238 (462)
Q Consensus 160 GyG~~~nv~rtVk~l~~-AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~g 238 (462)
|--+++.+.++.+..-+ .|-.=||||=- .+.|.|.| +.++.++|+..-.+ .+|.|.--|-..
T Consensus 78 Gc~taeEAv~tArlARE~~~t~wiKlEVi--------~d~~tLlP--D~~etl~Aae~Lv~---eGF~VlPY~~dD---- 140 (262)
T COG2022 78 GCRTAEEAVRTARLAREALGTNWIKLEVI--------GDEKTLLP--DPIETLKAAEQLVK---EGFVVLPYTTDD---- 140 (262)
T ss_pred ccCCHHHHHHHHHHHHHHccCCeEEEEEe--------cCCcccCC--ChHHHHHHHHHHHh---CCCEEeeccCCC----
Confidence 43467777777776665 46677888853 23456766 34778888876665 478888765432
Q ss_pred HHHHHHHHHHhHhcCCcEEEecC--------CCCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcCCCEEecc
Q 012478 239 LEESLRRSRAFADAGADVLFIDA--------LASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYP 310 (462)
Q Consensus 239 ldeAI~RakAy~eAGAD~Ifie~--------~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp 310 (462)
.--|++++|+||-+|++.+ +.+.+.++-+.++.. ||+.+.. |-| +| -...+-.|||+.-|+.-
T Consensus 141 ----~v~arrLee~GcaavMPl~aPIGSg~G~~n~~~l~iiie~a~-VPviVDA--GiG-~p-SdAa~aMElG~DaVL~N 211 (262)
T COG2022 141 ----PVLARRLEEAGCAAVMPLGAPIGSGLGLQNPYNLEIIIEEAD-VPVIVDA--GIG-TP-SDAAQAMELGADAVLLN 211 (262)
T ss_pred ----HHHHHHHHhcCceEeccccccccCCcCcCCHHHHHHHHHhCC-CCEEEeC--CCC-Ch-hHHHHHHhcccceeehh
Confidence 2258999999999999874 567889999999884 8887553 212 44 24678899999999875
Q ss_pred chH
Q 012478 311 LSL 313 (462)
Q Consensus 311 ~~l 313 (462)
...
T Consensus 212 TAi 214 (262)
T COG2022 212 TAI 214 (262)
T ss_pred hHh
Confidence 543
No 259
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=92.22 E-value=8 Score=37.46 Aligned_cols=146 Identities=20% Similarity=0.191 Sum_probs=88.8
Q ss_pred HHHHHHhhcCCcEEEeCCCCCCCHH-HHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHH
Q 012478 141 QGQLITQAVSIPVIGDGDNGYGNAM-NVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARK 219 (462)
Q Consensus 141 ~~~~I~ra~~iPVIaD~DtGyG~~~-nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~ 219 (462)
.++.+.+.. .||++|+=.+ +.. .+...++.+.++|++.+.+--.. | .+-|++++++..
T Consensus 41 ~i~~l~~~~-~~i~~DlK~~--DIg~tv~~~~~~~~~~gad~~Tvh~~~---------G---------~~~l~~~~~~~~ 99 (216)
T cd04725 41 IVKELRELG-FLVFLDLKLG--DIPNTVAAAAEALLGLGADAVTVHPYG---------G---------SDMLKAALEAAE 99 (216)
T ss_pred HHHHHHHCC-CcEEEEeecC--chHHHHHHHHHHHHhcCCCEEEECCcC---------C---------HHHHHHHHHHHh
Confidence 344444433 8999998864 543 35556777778899999984321 1 235566666655
Q ss_pred hhCCCeEEEEecchhhcc--------cHHH-HHHHHHHhHhcCCcEEEecCCCCHHHHHHHHHhCCCCceeeeeeecCCC
Q 012478 220 ESGSDIVIVARTDSRQAL--------SLEE-SLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGK 290 (462)
Q Consensus 220 ~~g~d~vIiARTDA~~~~--------glde-AI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~l~~~g~ 290 (462)
+.+..+++++.+-..... ..++ .+.+++...++|.+.++..+.. .+++++... |.+.-+++ |-
T Consensus 100 ~~~~~~~~v~~lss~~~~~~q~~~~~~~~~~~~~~~~~a~~~g~~G~V~~~~~-~~~i~~~~~-----~~~~~ltP--GI 171 (216)
T cd04725 100 EKGKGLFAVTVLSSPGALDLQEGIPGSLEDLVERLAKLAREAGVDGVVCGATE-PEALRRALG-----PDFLILTP--GI 171 (216)
T ss_pred ccCCeEEEEEcCCCCCHHHHHhhhcCCHHHHHHHHHHHHHHHCCCEEEECCcc-hHHHHHhhC-----CCCeEEcC--Cc
Confidence 445677878775543322 2223 5567888889999999876543 345543322 22222332 32
Q ss_pred C-C--------CCCHHHHHhcCCCEEeccchHHH
Q 012478 291 T-P--------ILNPLELEELGFKLVAYPLSLIG 315 (462)
Q Consensus 291 t-P--------~ls~~eL~~lGv~~V~yp~~ll~ 315 (462)
. . ..++++..+.|...++.|-..+.
T Consensus 172 ~~~~~~~dq~r~~~~~~a~~~g~~~ivvGR~I~~ 205 (216)
T cd04725 172 GAQGSGDDQKRGGTPEDAIRAGADYIVVGRPITQ 205 (216)
T ss_pred CCCCCccccccccCHHHHHHcCCcEEEEChhhcc
Confidence 2 2 34788999999888877765544
No 260
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=92.21 E-value=0.76 Score=49.40 Aligned_cols=98 Identities=19% Similarity=0.143 Sum_probs=60.0
Q ss_pred HHHHHHhC-CC-ceEecccCChHHHHHHHHhCCcEEEec-cHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEe
Q 012478 80 SLRQILEL-PG-VHQGPACFDALSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGD 156 (462)
Q Consensus 80 ~LR~ll~~-~~-~iv~p~ayDalSArl~e~aGfdaI~vS-G~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD 156 (462)
.++++.+. ++ ++++=++-+.-.|+.+.++|+|+|-++ |.+......-.-+ ..++.-+.+..+...++..++|||+|
T Consensus 255 ~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~vg~g~G~~~~t~~~~~-~g~p~~~~i~~~~~~~~~~~vpviad 333 (450)
T TIGR01302 255 SIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPGSICTTRIVAG-VGVPQITAVYDVAEYAAQSGIPVIAD 333 (450)
T ss_pred HHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEEECCCCCcCCccceecC-CCccHHHHHHHHHHHHhhcCCeEEEe
Confidence 34444443 33 455558999999999999999999877 4332111111111 11222245555666666778999998
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCccEEEe
Q 012478 157 GDNGYGNAMNVKRTVKGYIKAGFAGIIL 184 (462)
Q Consensus 157 ~DtGyG~~~nv~rtVk~l~~AGaaGI~I 184 (462)
. |.-++.++. +..++||.+|.+
T Consensus 334 G--Gi~~~~di~----kAla~GA~~V~~ 355 (450)
T TIGR01302 334 G--GIRYSGDIV----KALAAGADAVML 355 (450)
T ss_pred C--CCCCHHHHH----HHHHcCCCEEEE
Confidence 3 333444454 334689999999
No 261
>cd03325 D-galactonate_dehydratase D-galactonate dehydratase catalyses the dehydration of galactonate to 2-keto-3-deoxygalactnate (KDGal), as part of the D-galactonate nonphosphorolytic catabolic Entner-Doudoroff pathway. D-galactonate dehydratase belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=92.18 E-value=3.7 Score=42.43 Aligned_cols=116 Identities=19% Similarity=0.226 Sum_probs=76.1
Q ss_pred CcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEe
Q 012478 151 IPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVAR 230 (462)
Q Consensus 151 iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiAR 230 (462)
+|+-+= .|.+++..+.+.++++.+.|...+||-=+.. -+..++. -+.++-+++|++++++. |+++.| |
T Consensus 113 i~~~~~--~~~~~~~~~~~~~~~~~~~Gf~~~KiKvg~~---~~~~~~~--~~~~~D~~~i~avr~~~---g~~~~l--~ 180 (352)
T cd03325 113 VRVYSW--IGGDRPSDVAEAARARREAGFTAVKMNATEE---LQWIDTS--KKVDAAVERVAALREAV---GPDIDI--G 180 (352)
T ss_pred eEEEEe--CCCCCHHHHHHHHHHHHHcCCCEEEecCCCC---cccCCCH--HHHHHHHHHHHHHHHhh---CCCCEE--E
Confidence 565532 2334666777778888889999999932100 0000000 12344577888877663 566655 6
Q ss_pred cchhhcccHHHHHHHHHHhHhcCCcEEEecCC---CCHHHHHHHHHhCCCCcee
Q 012478 231 TDSRQALSLEESLRRSRAFADAGADVLFIDAL---ASKEEMKAFCEISPLVPKM 281 (462)
Q Consensus 231 TDA~~~~gldeAI~RakAy~eAGAD~Ifie~~---~s~eei~~i~~~v~~vP~~ 281 (462)
.|+-...++++|++.++++.+.| +.|+|-+ .+.+.++++++..+ +|+.
T Consensus 181 vDaN~~~~~~~A~~~~~~l~~~~--i~~iEeP~~~~d~~~~~~L~~~~~-~pia 231 (352)
T cd03325 181 VDFHGRVSKPMAKDLAKELEPYR--LLFIEEPVLPENVEALAEIAARTT-IPIA 231 (352)
T ss_pred EECCCCCCHHHHHHHHHhccccC--CcEEECCCCccCHHHHHHHHHhCC-CCEE
Confidence 78877788999999999998765 6678764 35678888888765 5655
No 262
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=92.17 E-value=2.8 Score=44.17 Aligned_cols=132 Identities=22% Similarity=0.290 Sum_probs=76.2
Q ss_pred CCcEE-EeCCCCCCCHHHHHHHHHHHHHhCccEE-EeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHH----HHhhCC
Q 012478 150 SIPVI-GDGDNGYGNAMNVKRTVKGYIKAGFAGI-ILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDA----RKESGS 223 (462)
Q Consensus 150 ~iPVI-aD~DtGyG~~~nv~rtVk~l~~AGaaGI-~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~A----r~~~g~ 223 (462)
++||| +-||+= .+. +++..|.+.|.=|| |-+. +.|+.++.++..+.. ..+...
T Consensus 37 ~iPivsa~MDtV-te~----~mAiama~~Gglgvih~~~----------------~~e~q~~~v~~vK~~~~~a~~d~~~ 95 (352)
T PF00478_consen 37 KIPIVSAPMDTV-TES----EMAIAMARLGGLGVIHRNM----------------SIEEQAEEVKKVKRYYPNASKDEKG 95 (352)
T ss_dssp SSSEEE-SSTTT-SSH----HHHHHHHHTTSEEEEESSS----------------CHHHHHHHHHHHHTHHTTHHBHTTS
T ss_pred cCceEecCcccc-chH----HHHHHHHHhcCCceecCCC----------------CHHHHHHHHhhhccccccccccccc
Confidence 68977 455553 332 33445556655554 3322 356666666665532 222223
Q ss_pred CeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEecCC--CC---HHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHH
Q 012478 224 DIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDAL--AS---KEEMKAFCEISPLVPKMANMLEGGGKTPILNPLE 298 (462)
Q Consensus 224 d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~~--~s---~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~e 298 (462)
.++|-|-.-. .++.++|+.++.+||+|+|+|+.- .+ .+.++.+.+.+|.+|+++.=+. |+ -..++
T Consensus 96 ~l~V~aavg~-----~~~~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik~ik~~~~~~~viaGNV~----T~-e~a~~ 165 (352)
T PF00478_consen 96 RLLVAAAVGT-----RDDDFERAEALVEAGVDVIVIDSAHGHSEHVIDMIKKIKKKFPDVPVIAGNVV----TY-EGAKD 165 (352)
T ss_dssp CBCEEEEEES-----STCHHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHHHHHHHSTTSEEEEEEE-----SH-HHHHH
T ss_pred cceEEEEecC-----CHHHHHHHHHHHHcCCCEEEccccCccHHHHHHHHHHHHHhCCCceEEecccC----CH-HHHHH
Confidence 4555544322 135688999999999999999753 23 3466677777876666543221 11 14688
Q ss_pred HHhcCCCEEeccch
Q 012478 299 LEELGFKLVAYPLS 312 (462)
Q Consensus 299 L~~lGv~~V~yp~~ 312 (462)
|.+.|+.-|..+..
T Consensus 166 L~~aGad~vkVGiG 179 (352)
T PF00478_consen 166 LIDAGADAVKVGIG 179 (352)
T ss_dssp HHHTT-SEEEESSS
T ss_pred HHHcCCCEEEEecc
Confidence 99999999988743
No 263
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=92.16 E-value=0.74 Score=50.11 Aligned_cols=99 Identities=14% Similarity=0.203 Sum_probs=63.6
Q ss_pred HHHHHHHhC-CCceEecc-cCChHHHHHHHHhCCcEEEec-cHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEE
Q 012478 79 KSLRQILEL-PGVHQGPA-CFDALSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIG 155 (462)
Q Consensus 79 ~~LR~ll~~-~~~iv~p~-ayDalSArl~e~aGfdaI~vS-G~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIa 155 (462)
..++++++. ++..++.| +-+.-.|+.+.++|+|+|-++ |.+...+.-++-+.+.-+++-.++.++.. +..++|||+
T Consensus 255 ~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~-~~~~~~via 333 (475)
T TIGR01303 255 SAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEA-RKLGGHVWA 333 (475)
T ss_pred HHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHH-HHcCCcEEE
Confidence 345555543 24444445 999999999999999999988 43433333455555544555555554444 334899999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhCccEEEe
Q 012478 156 DGDNGYGNAMNVKRTVKGYIKAGFAGIIL 184 (462)
Q Consensus 156 D~DtGyG~~~nv~rtVk~l~~AGaaGI~I 184 (462)
|. |+-++.++. |.+ .+||.+|.+
T Consensus 334 dG--gi~~~~di~---kal-a~GA~~vm~ 356 (475)
T TIGR01303 334 DG--GVRHPRDVA---LAL-AAGASNVMV 356 (475)
T ss_pred eC--CCCCHHHHH---HHH-HcCCCEEee
Confidence 84 344554554 333 589999998
No 264
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=92.12 E-value=0.6 Score=49.22 Aligned_cols=93 Identities=19% Similarity=0.175 Sum_probs=61.9
Q ss_pred hHHHHHHHHhCCCceEecccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEe
Q 012478 77 PAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGD 156 (462)
Q Consensus 77 ~a~~LR~ll~~~~~iv~p~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD 156 (462)
.-+.||+.. +.++++-|+-+.-.|+.+.++|+|+|.+|+.+-- .+ |...-+ ++....|++.+++|||+|
T Consensus 227 ~i~~ir~~~--~~pviiKgV~~~eda~~a~~~G~d~I~VSnhGGr--ql---d~~~~~----~~~L~ei~~~~~~~vi~d 295 (361)
T cd04736 227 DLRWLRDLW--PHKLLVKGIVTAEDAKRCIELGADGVILSNHGGR--QL---DDAIAP----IEALAEIVAATYKPVLID 295 (361)
T ss_pred HHHHHHHhC--CCCEEEecCCCHHHHHHHHHCCcCEEEECCCCcC--CC---cCCccH----HHHHHHHHHHhCCeEEEe
Confidence 344555544 4688999999999999999999999999964421 11 322223 334445556667999988
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCccEEEeCC
Q 012478 157 GDNGYGNAMNVKRTVKGYIKAGFAGIILED 186 (462)
Q Consensus 157 ~DtGyG~~~nv~rtVk~l~~AGaaGI~IED 186 (462)
. |+-+..++. +....||.+|.|--
T Consensus 296 G--GIr~g~Dv~----KALaLGA~aV~iGr 319 (361)
T cd04736 296 S--GIRRGSDIV----KALALGANAVLLGR 319 (361)
T ss_pred C--CCCCHHHHH----HHHHcCCCEEEECH
Confidence 3 444444554 33458999999833
No 265
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=92.11 E-value=0.81 Score=46.86 Aligned_cols=90 Identities=23% Similarity=0.280 Sum_probs=60.3
Q ss_pred HHHHHHHhCCCceEecccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCC
Q 012478 79 KSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGD 158 (462)
Q Consensus 79 ~~LR~ll~~~~~iv~p~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~D 158 (462)
+.++++++ .+..+++.+.+.--|+.++++|+|+|.+.|... -|+. +..+. ......+++.+++|||+...
T Consensus 100 ~~i~~lk~-~g~~v~~~v~s~~~a~~a~~~GaD~Ivv~g~ea----gGh~--g~~~~---~~ll~~v~~~~~iPviaaGG 169 (307)
T TIGR03151 100 KYIPRLKE-NGVKVIPVVASVALAKRMEKAGADAVIAEGMES----GGHI--GELTT---MALVPQVVDAVSIPVIAAGG 169 (307)
T ss_pred HHHHHHHH-cCCEEEEEcCCHHHHHHHHHcCCCEEEEECccc----CCCC--CCCcH---HHHHHHHHHHhCCCEEEECC
Confidence 34455444 457778888888899999999999999987632 2442 11221 34455666777899999854
Q ss_pred CCCCCHHHHHHHHHHHHHhCccEEEe
Q 012478 159 NGYGNAMNVKRTVKGYIKAGFAGIIL 184 (462)
Q Consensus 159 tGyG~~~nv~rtVk~l~~AGaaGI~I 184 (462)
- ++...+. .+.+.||+||.+
T Consensus 170 I--~~~~~~~----~al~~GA~gV~i 189 (307)
T TIGR03151 170 I--ADGRGMA----AAFALGAEAVQM 189 (307)
T ss_pred C--CCHHHHH----HHHHcCCCEeec
Confidence 4 3443333 333479999998
No 266
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=92.05 E-value=6.3 Score=39.95 Aligned_cols=133 Identities=17% Similarity=0.063 Sum_probs=83.8
Q ss_pred HHHHHHHhCCcEEEecc-HHHHhhhccCCCCCCCCHHHHHHHHHHHHh---hcCCcEEEeCCCCCC-----CHHHHHHHH
Q 012478 101 SAKLVEKSGFSFCFTSG-FSISAARLALPDTGFISYGEMVDQGQLITQ---AVSIPVIGDGDNGYG-----NAMNVKRTV 171 (462)
Q Consensus 101 SArl~e~aGfdaI~vSG-~avSas~lG~PD~g~vsl~Eml~~~~~I~r---a~~iPVIaD~DtGyG-----~~~nv~rtV 171 (462)
....+-++|++.|-+.- ..-. +-.-- -..+.+|.++.++.+.+ ..++.|.+.+++ |+ ++..+.+.+
T Consensus 79 ~~~~A~~~g~~~i~i~~~~S~~---h~~~~-~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d-~~~~~r~~~~~~~~~~ 153 (280)
T cd07945 79 SVDWIKSAGAKVLNLLTKGSLK---HCTEQ-LRKTPEEHFADIREVIEYAIKNGIEVNIYLED-WSNGMRDSPDYVFQLV 153 (280)
T ss_pred HHHHHHHCCCCEEEEEEeCCHH---HHHHH-HCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEe-CCCCCcCCHHHHHHHH
Confidence 34556667998776662 1111 11111 11567888777766654 335777777776 44 567899999
Q ss_pred HHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHh
Q 012478 172 KGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFAD 251 (462)
Q Consensus 172 k~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~e 251 (462)
+.+.++|+.-|.|-|.. | +..++++.+.+++.++... +..+-+-...| +.-++.-+.+..+
T Consensus 154 ~~~~~~G~~~i~l~DT~-----G------~~~P~~v~~l~~~l~~~~~--~~~i~~H~Hnd------~Gla~AN~laA~~ 214 (280)
T cd07945 154 DFLSDLPIKRIMLPDTL-----G------ILSPFETYTYISDMVKRYP--NLHFDFHAHND------YDLAVANVLAAVK 214 (280)
T ss_pred HHHHHcCCCEEEecCCC-----C------CCCHHHHHHHHHHHHhhCC--CCeEEEEeCCC------CCHHHHHHHHHHH
Confidence 99999999999999986 3 3334566667766664321 12233333333 2345777888899
Q ss_pred cCCcEE
Q 012478 252 AGADVL 257 (462)
Q Consensus 252 AGAD~I 257 (462)
+||+.|
T Consensus 215 aGa~~v 220 (280)
T cd07945 215 AGIKGL 220 (280)
T ss_pred hCCCEE
Confidence 999964
No 267
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=91.91 E-value=0.83 Score=47.92 Aligned_cols=84 Identities=19% Similarity=0.118 Sum_probs=55.9
Q ss_pred CCceEecccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhc--CCcEEEeCCCCCCCHH
Q 012478 88 PGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV--SIPVIGDGDNGYGNAM 165 (462)
Q Consensus 88 ~~~iv~p~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~--~iPVIaD~DtGyG~~~ 165 (462)
+.++++=|+-..-.|+.+.++|+|+|.+|+.+- . .-|.+..+++- +..|+++. .+|||+|..-- +..
T Consensus 221 ~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhGG---r--~ld~~~~~~~~----l~~i~~a~~~~i~vi~dGGIr--~g~ 289 (351)
T cd04737 221 GLPVIVKGIQSPEDADVAINAGADGIWVSNHGG---R--QLDGGPASFDS----LPEIAEAVNHRVPIIFDSGVR--RGE 289 (351)
T ss_pred CCcEEEecCCCHHHHHHHHHcCCCEEEEeCCCC---c--cCCCCchHHHH----HHHHHHHhCCCCeEEEECCCC--CHH
Confidence 457888889899999999999999999995431 1 12444444433 33445544 59999994332 333
Q ss_pred HHHHHHHHHHHhCccEEEeCC
Q 012478 166 NVKRTVKGYIKAGFAGIILED 186 (462)
Q Consensus 166 nv~rtVk~l~~AGaaGI~IED 186 (462)
++. |.+ ..||++|.|--
T Consensus 290 Di~---kaL-alGA~~V~iGr 306 (351)
T cd04737 290 HVF---KAL-ASGADAVAVGR 306 (351)
T ss_pred HHH---HHH-HcCCCEEEECH
Confidence 343 444 48999999944
No 268
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=91.90 E-value=10 Score=38.03 Aligned_cols=143 Identities=15% Similarity=0.152 Sum_probs=91.3
Q ss_pred eEecccCChHHHHHHHHhCCcEEEec-cHHHHhhhccCCCCCCCCHHHHHHHHHHHHh---hcCCcEEEeCCCCCCC-HH
Q 012478 91 HQGPACFDALSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQ---AVSIPVIGDGDNGYGN-AM 165 (462)
Q Consensus 91 iv~p~ayDalSArl~e~aGfdaI~vS-G~avSas~lG~PD~g~vsl~Eml~~~~~I~r---a~~iPVIaD~DtGyG~-~~ 165 (462)
+.+....+.--...+.++|++.|-+. +..-. +-..- -..+.+|.++.+..+.+ ..++.|.+.+++.|+. +.
T Consensus 66 v~~~~r~~~~di~~a~~~g~~~i~i~~~~S~~---~~~~~-~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~ 141 (262)
T cd07948 66 ILTHIRCHMDDARIAVETGVDGVDLVFGTSPF---LREAS-HGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLV 141 (262)
T ss_pred EEEEecCCHHHHHHHHHcCcCEEEEEEecCHH---HHHHH-hCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHH
Confidence 33334445555667778899977665 21110 00111 12567887777665543 3468999999998885 57
Q ss_pred HHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHH
Q 012478 166 NVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRR 245 (462)
Q Consensus 166 nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~R 245 (462)
.+.+.++++.++|+..|.|-|.. | +..++++.+.++++++.- +.++-+-...|- .-++.-
T Consensus 142 ~l~~~~~~~~~~g~~~i~l~Dt~-----G------~~~P~~v~~~~~~~~~~~---~~~i~~H~Hn~~------Gla~an 201 (262)
T cd07948 142 DLLRVYRAVDKLGVNRVGIADTV-----G------IATPRQVYELVRTLRGVV---SCDIEFHGHNDT------GCAIAN 201 (262)
T ss_pred HHHHHHHHHHHcCCCEEEECCcC-----C------CCCHHHHHHHHHHHHHhc---CCeEEEEECCCC------ChHHHH
Confidence 89999999999999999999986 3 334556666666665432 233434333332 234667
Q ss_pred HHHhHhcCCcEE
Q 012478 246 SRAFADAGADVL 257 (462)
Q Consensus 246 akAy~eAGAD~I 257 (462)
+.+..++||+.|
T Consensus 202 ~~~a~~aG~~~v 213 (262)
T cd07948 202 AYAALEAGATHI 213 (262)
T ss_pred HHHHHHhCCCEE
Confidence 888889999953
No 269
>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B ....
Probab=91.86 E-value=1.6 Score=43.31 Aligned_cols=127 Identities=20% Similarity=0.180 Sum_probs=81.5
Q ss_pred HHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhc---CCcEEEeCCCCC---CCHHHHHHHHHH
Q 012478 100 LSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV---SIPVIGDGDNGY---GNAMNVKRTVKG 173 (462)
Q Consensus 100 lSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~---~iPVIaD~DtGy---G~~~nv~rtVk~ 173 (462)
-+.+-++++|+-+|.+=-- ..|.+...+++.+||++.++.+.++. +.-|++=-|.=. ++...+.+-.+.
T Consensus 89 ~tv~~~~~aG~agi~IEDq-----~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI~R~~a 163 (238)
T PF13714_consen 89 RTVRELERAGAAGINIEDQ-----RCGHGGKQLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAIERAKA 163 (238)
T ss_dssp HHHHHHHHCT-SEEEEESB-----STTTSTT-B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcEEEeecc-----ccCCCCCceeCHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHHHHHHH
Confidence 3557778899999988732 23556678899999999999998764 466777777711 234556666789
Q ss_pred HHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcC
Q 012478 174 YIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAG 253 (462)
Q Consensus 174 l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAG 253 (462)
|.+|||++|.+|.-. +.++ ++++...+ +.++.++. +... . -.+.+.++|
T Consensus 164 Y~eAGAD~ifi~~~~--------------~~~~-i~~~~~~~------~~Pl~v~~-~~~~--~-------~~~eL~~lG 212 (238)
T PF13714_consen 164 YAEAGADMIFIPGLQ--------------SEEE-IERIVKAV------DGPLNVNP-GPGT--L-------SAEELAELG 212 (238)
T ss_dssp HHHTT-SEEEETTSS--------------SHHH-HHHHHHHH------SSEEEEET-TSSS--S--------HHHHHHTT
T ss_pred HHHcCCCEEEeCCCC--------------CHHH-HHHHHHhc------CCCEEEEc-CCCC--C-------CHHHHHHCC
Confidence 999999999998742 2344 45554333 23566666 3211 1 366788899
Q ss_pred CcEEEecCC
Q 012478 254 ADVLFIDAL 262 (462)
Q Consensus 254 AD~Ifie~~ 262 (462)
...|..+..
T Consensus 213 v~~v~~~~~ 221 (238)
T PF13714_consen 213 VKRVSYGNS 221 (238)
T ss_dssp ESEEEETSH
T ss_pred CcEEEEcHH
Confidence 999987653
No 270
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=91.86 E-value=1.1 Score=45.82 Aligned_cols=147 Identities=17% Similarity=0.128 Sum_probs=78.7
Q ss_pred EecccCChHH----HHHHHHhCCcEEEec-cHHHHh-hhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCC-H
Q 012478 92 QGPACFDALS----AKLVEKSGFSFCFTS-GFSISA-ARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGN-A 164 (462)
Q Consensus 92 v~p~ayDalS----Arl~e~aGfdaI~vS-G~avSa-s~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~-~ 164 (462)
+=.+.-|+-. |.+++..|++.|=+= |-...- ..-|+=..-+-..+.+.+.++.+.+++++||.+-+-.|+.+ .
T Consensus 58 ~Ql~g~~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~~~ 137 (309)
T PF01207_consen 58 VQLFGNDPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDDSP 137 (309)
T ss_dssp EEEE-S-HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT--C
T ss_pred EEEeeccHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEecccccccch
Confidence 3345556543 344445588877554 311111 11233222334567778888899999999999999999984 4
Q ss_pred HHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHH
Q 012478 165 MNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLR 244 (462)
Q Consensus 165 ~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~ 244 (462)
.+..+.++.+.++|+++|.|-.-+. +-.+.+ .... +-|+.++++ ..+.|++.-|-.. .++
T Consensus 138 ~~~~~~~~~l~~~G~~~i~vH~Rt~--~q~~~~---~a~w----~~i~~i~~~-----~~ipvi~NGdI~s---~~d--- 197 (309)
T PF01207_consen 138 EETIEFARILEDAGVSAITVHGRTR--KQRYKG---PADW----EAIAEIKEA-----LPIPVIANGDIFS---PED--- 197 (309)
T ss_dssp HHHHHHHHHHHHTT--EEEEECS-T--TCCCTS------H----HHHHHCHHC------TSEEEEESS--S---HHH---
T ss_pred hHHHHHHHHhhhcccceEEEecCch--hhcCCc---ccch----HHHHHHhhc-----ccceeEEcCccCC---HHH---
Confidence 7899999999999999999976541 112211 1222 233333333 2367777767643 233
Q ss_pred HHHHhH-hcCCcEEEe
Q 012478 245 RSRAFA-DAGADVLFI 259 (462)
Q Consensus 245 RakAy~-eAGAD~Ifi 259 (462)
++.+. ..|||.|++
T Consensus 198 -~~~~~~~tg~dgvMi 212 (309)
T PF01207_consen 198 -AERMLEQTGADGVMI 212 (309)
T ss_dssp -HHHHCCCH-SSEEEE
T ss_pred -HHHHHHhcCCcEEEE
Confidence 33333 349999998
No 271
>TIGR00035 asp_race aspartate racemase.
Probab=91.85 E-value=1.6 Score=42.39 Aligned_cols=101 Identities=15% Similarity=0.183 Sum_probs=64.7
Q ss_pred ccCHHHHHHHHHHHHHHHHhh-CCCeEEEEecch------hhc----ccHHHHHHHHHHhHhcCCcEEEecCCCCHHHHH
Q 012478 201 VVSREEAVMRIKAAVDARKES-GSDIVIVARTDS------RQA----LSLEESLRRSRAFADAGADVLFIDALASKEEMK 269 (462)
Q Consensus 201 Lvp~ee~~~kI~AA~~Ar~~~-g~d~vIiARTDA------~~~----~gldeAI~RakAy~eAGAD~Ifie~~~s~eei~ 269 (462)
-....++.+||.....+..+. ..+.++.-..+- ... .-....++-++.++++|||+|++.|-.....+.
T Consensus 12 p~at~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g~d~iviaCNTah~~~~ 91 (229)
T TIGR00035 12 PLATAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAGADFIIMPCNTAHKFAE 91 (229)
T ss_pred HHHHHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcCCCEEEECCccHHHHHH
Confidence 345567788887777665431 245666655543 111 123345556777788999999999976555567
Q ss_pred HHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcCCCEEecc
Q 012478 270 AFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYP 310 (462)
Q Consensus 270 ~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp 310 (462)
++.+.++ +|. ++|++. +.+.+++.|.++|-.=
T Consensus 92 ~l~~~~~-iPi-i~i~~~-------~~~~~~~~~~~~VgvL 123 (229)
T TIGR00035 92 DIQKAIG-IPL-ISMIEE-------TAEAVKEDGVKKAGLL 123 (229)
T ss_pred HHHHhCC-CCE-echHHH-------HHHHHHHcCCCEEEEE
Confidence 7777665 664 566542 5677888888887553
No 272
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=91.83 E-value=0.7 Score=41.85 Aligned_cols=82 Identities=24% Similarity=0.211 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhHhcCCcEEEecCCC--CHHHHHHHHHhCCC--CceeeeeeecCCCCCCCCHHHHHhcCCCEEeccchHH
Q 012478 239 LEESLRRSRAFADAGADVLFIDALA--SKEEMKAFCEISPL--VPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLI 314 (462)
Q Consensus 239 ldeAI~RakAy~eAGAD~Ifie~~~--s~eei~~i~~~v~~--vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~ll 314 (462)
.++.++ +..+.+||+|.+-++. +.+.+.++.+.+.. .+.+. ++.+ |..|.-..++|.++|+..++.|.+-+
T Consensus 42 ~e~~v~---aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~-vivG-G~~~~~~~~~l~~~Gvd~~~~~gt~~ 116 (132)
T TIGR00640 42 PEEIAR---QAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDIL-VVVG-GVIPPQDFDELKEMGVAEIFGPGTPI 116 (132)
T ss_pred HHHHHH---HHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCE-EEEe-CCCChHhHHHHHHCCCCEEECCCCCH
Confidence 344444 3457799999998764 45566666654321 11111 2333 54565568899999999999999988
Q ss_pred HHHHHHHHHHH
Q 012478 315 GVSVRAMQDAL 325 (462)
Q Consensus 315 ~aa~~Am~~~l 325 (462)
...+.++...+
T Consensus 117 ~~i~~~l~~~~ 127 (132)
T TIGR00640 117 PESAIFLLKKL 127 (132)
T ss_pred HHHHHHHHHHH
Confidence 88887776654
No 273
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=91.77 E-value=6.2 Score=39.83 Aligned_cols=109 Identities=14% Similarity=0.246 Sum_probs=72.0
Q ss_pred cCCcEEEeCCCCCCCHH-HHHHHHHHHH-HhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeE
Q 012478 149 VSIPVIGDGDNGYGNAM-NVKRTVKGYI-KAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIV 226 (462)
Q Consensus 149 ~~iPVIaD~DtGyG~~~-nv~rtVk~l~-~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~v 226 (462)
.+.|||+|+=.| +.- .+...++.+. ..|+++|.+--- +| .+.+++++++..+.+..++
T Consensus 85 ~g~~VilD~K~~--DIpnTv~~~a~a~~~~~g~D~vTvh~~-----~G-------------~d~l~~~~~~~~~~~~~v~ 144 (261)
T TIGR02127 85 LGLPVLADVKRG--DIGSTASAYAKAWLGHLHADALTVSPY-----LG-------------LDSLRPFLEYARANGAGIF 144 (261)
T ss_pred CCCeEEEEeecc--ChHHHHHHHHHHHHhhcCCCEEEECCc-----CC-------------HHHHHHHHHHHhhcCCEEE
Confidence 478999998876 543 3444566666 689999988432 12 2244555554443345788
Q ss_pred EEEecchh-----hc----c--c-HHHHHHHHHHhHhc----CCcEEEecCCCCHHHHHHHHHhCCCC
Q 012478 227 IVARTDSR-----QA----L--S-LEESLRRSRAFADA----GADVLFIDALASKEEMKAFCEISPLV 278 (462)
Q Consensus 227 IiARTDA~-----~~----~--g-ldeAI~RakAy~eA----GAD~Ifie~~~s~eei~~i~~~v~~v 278 (462)
|.++|-.- +. . . .+..+++++.+.++ |.|.+++.+ ++++|++++.+..+..
T Consensus 145 VlvlTSnp~~~~lq~~~~~~~~~~~~~V~~~a~~~~~~~~~~g~~GvV~gA-T~p~e~~~iR~~~~~~ 211 (261)
T TIGR02127 145 VLVKTSNPGGADLQDLRVSDGRTVYEEVAELAGELNESPGDCSSVGAVVGA-TSPGDLLRLRIEMPTA 211 (261)
T ss_pred EEEeCCCCCHHHHhhhhccCCCCHHHHHHHHHHHhccccCcCCceEEEECC-CCHHHHHHHHHhCCCC
Confidence 88888651 11 1 2 35677888888777 899999976 4578999998876543
No 274
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=91.76 E-value=6.7 Score=40.69 Aligned_cols=86 Identities=20% Similarity=0.048 Sum_probs=52.9
Q ss_pred HHHHHHHHhCCcEEEecc---HHHHhhh----ccCCCCCCCCHH----HHHHHHHHHHhhcC--CcEE-----EeCCCCC
Q 012478 100 LSAKLVEKSGFSFCFTSG---FSISAAR----LALPDTGFISYG----EMVDQGQLITQAVS--IPVI-----GDGDNGY 161 (462)
Q Consensus 100 lSArl~e~aGfdaI~vSG---~avSas~----lG~PD~g~vsl~----Eml~~~~~I~ra~~--iPVI-----aD~DtGy 161 (462)
-.|+.+.++|||+|-+-+ +-+.... .=..|.--=+++ ..++.++.|.++++ .||. .|...|.
T Consensus 141 ~aA~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g 220 (353)
T cd02930 141 RCAALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGG 220 (353)
T ss_pred HHHHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCCCC
Confidence 467888899999998853 3332110 011221111333 34556667766664 5664 4655442
Q ss_pred CCHHHHHHHHHHHHHhCccEEEeC
Q 012478 162 GNAMNVKRTVKGYIKAGFAGIILE 185 (462)
Q Consensus 162 G~~~nv~rtVk~l~~AGaaGI~IE 185 (462)
-+.....+.++.++++|++-|++-
T Consensus 221 ~~~~e~~~i~~~Le~~G~d~i~vs 244 (353)
T cd02930 221 STWEEVVALAKALEAAGADILNTG 244 (353)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeC
Confidence 255678899999999999999993
No 275
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=91.76 E-value=3.9 Score=43.00 Aligned_cols=153 Identities=22% Similarity=0.231 Sum_probs=81.8
Q ss_pred HHHHHHHHHHhCccEEEeCCCCC--------C---CCCCCCCCCcccCHHHHH-HHHHHHHHHHHhhCCCeEEEEecchh
Q 012478 167 VKRTVKGYIKAGFAGIILEDQVS--------P---KGCGHTRGRKVVSREEAV-MRIKAAVDARKESGSDIVIVARTDSR 234 (462)
Q Consensus 167 v~rtVk~l~~AGaaGI~IEDq~~--------P---KrCGH~~gk~Lvp~ee~~-~kI~AA~~Ar~~~g~d~vIiARTDA~ 234 (462)
..+.++...+||++||.|--.-. | +|-..-+| .+-..-.++ +-|++++++ .|+||.|.-|....
T Consensus 146 f~~AA~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGG-slenR~Rf~~eii~air~~---vG~d~~v~vRis~~ 221 (361)
T cd04747 146 FARAAADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGG-SLAARSRFAAEVVKAIRAA---VGPDFPIILRFSQW 221 (361)
T ss_pred HHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHH---cCCCCeEEEEECcc
Confidence 34556777789999999965421 1 22221122 222222222 223333332 36788888786541
Q ss_pred --------hcccHHHHHHHHHHhHhcCCcEEEecCC----C-----CHHHHHHHHHhCCCCceeeeeeecCCCCCC----
Q 012478 235 --------QALSLEESLRRSRAFADAGADVLFIDAL----A-----SKEEMKAFCEISPLVPKMANMLEGGGKTPI---- 293 (462)
Q Consensus 235 --------~~~gldeAI~RakAy~eAGAD~Ifie~~----~-----s~eei~~i~~~v~~vP~~~N~l~~~g~tP~---- 293 (462)
....++|+++-++.+.++|+|.|=+-+- + .....+++.+.++ +|++++ ++-++.
T Consensus 222 ~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g~~~~~~~~~~~~~~~~~~k~~~~-~pv~~~----G~i~~~~~~~ 296 (361)
T cd04747 222 KQQDYTARLADTPDELEALLAPLVDAGVDIFHCSTRRFWEPEFEGSELNLAGWTKKLTG-LPTITV----GSVGLDGDFI 296 (361)
T ss_pred cccccccCCCCCHHHHHHHHHHHHHcCCCEEEecCCCccCCCcCccchhHHHHHHHHcC-CCEEEE----CCcccccccc
Confidence 1245789999999999999999755221 1 1233444555554 576644 121100
Q ss_pred -----------CC---HHHHHh-cCCCEEeccchHHHHHHHHHHHHHHHHHcCCC
Q 012478 294 -----------LN---PLELEE-LGFKLVAYPLSLIGVSVRAMQDALTAIKGGRI 333 (462)
Q Consensus 294 -----------ls---~~eL~~-lGv~~V~yp~~ll~aa~~Am~~~l~~l~~g~~ 333 (462)
.+ .+++-+ -++.+|.++-.++.- -+....+++|+.
T Consensus 297 ~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~iad-----P~~~~k~~~g~~ 346 (361)
T cd04747 297 GAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLSD-----PAWVAKVREGRL 346 (361)
T ss_pred cccccccccccCCHHHHHHHHHCCCCCeehhhHHHHhC-----cHHHHHHHcCCc
Confidence 12 233333 448888776655442 244556666653
No 276
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=91.68 E-value=14 Score=37.12 Aligned_cols=131 Identities=11% Similarity=-0.007 Sum_probs=86.2
Q ss_pred ccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCC-CHHHHHHHHHH
Q 012478 95 ACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYG-NAMNVKRTVKG 173 (462)
Q Consensus 95 ~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG-~~~nv~rtVk~ 173 (462)
.-.|.---..+.+.|++.|-++- +. -.++++...++.+. ..+.-|.+.+.+.++ ++..+.+.+++
T Consensus 81 ~~~~~~~l~~a~~~gv~~iri~~----------~~---~~~~~~~~~i~~ak-~~G~~v~~~~~~a~~~~~~~~~~~~~~ 146 (266)
T cd07944 81 GNDDIDLLEPASGSVVDMIRVAF----------HK---HEFDEALPLIKAIK-EKGYEVFFNLMAISGYSDEELLELLEL 146 (266)
T ss_pred CCCCHHHHHHHhcCCcCEEEEec----------cc---ccHHHHHHHHHHHH-HCCCeEEEEEEeecCCCHHHHHHHHHH
Confidence 33454555566778888877642 11 14666666666653 346778888888766 56789999999
Q ss_pred HHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcC
Q 012478 174 YIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAG 253 (462)
Q Consensus 174 l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAG 253 (462)
+.++|+..|.|-|.. | +..++++.+.++++++.... +..+-+-+..| +.-++.-+.+..+||
T Consensus 147 ~~~~g~~~i~l~DT~-----G------~~~P~~v~~lv~~l~~~~~~-~~~i~~H~Hn~------~Gla~AN~laA~~aG 208 (266)
T cd07944 147 VNEIKPDVFYIVDSF-----G------SMYPEDIKRIISLLRSNLDK-DIKLGFHAHNN------LQLALANTLEAIELG 208 (266)
T ss_pred HHhCCCCEEEEecCC-----C------CCCHHHHHHHHHHHHHhcCC-CceEEEEeCCC------ccHHHHHHHHHHHcC
Confidence 999999999999985 3 33456777777777654321 01233333332 344577788888999
Q ss_pred CcEE
Q 012478 254 ADVL 257 (462)
Q Consensus 254 AD~I 257 (462)
|+.|
T Consensus 209 a~~v 212 (266)
T cd07944 209 VEII 212 (266)
T ss_pred CCEE
Confidence 9864
No 277
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=91.67 E-value=16 Score=38.27 Aligned_cols=153 Identities=15% Similarity=0.076 Sum_probs=95.1
Q ss_pred HHHHHHHhCC--CceEecccCChHHHHHHHHhCCcEEEeccHH---HHhhhccCCCCCCCCHHHHHHHHHHHH---hhcC
Q 012478 79 KSLRQILELP--GVHQGPACFDALSAKLVEKSGFSFCFTSGFS---ISAARLALPDTGFISYGEMVDQGQLIT---QAVS 150 (462)
Q Consensus 79 ~~LR~ll~~~--~~iv~p~ayDalSArl~e~aGfdaI~vSG~a---vSas~lG~PD~g~vsl~Eml~~~~~I~---ra~~ 150 (462)
+.++.+.+.. ..+.+.+-.+.-....+.++|++.+.+.... .....++ .+.+|+++.+.... +..+
T Consensus 53 e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~------~s~~e~l~~~~~~i~~ak~~g 126 (365)
T TIGR02660 53 AVIRAIVALGLPARLMAWCRARDADIEAAARCGVDAVHISIPVSDLQIEAKLR------KDRAWVLERLARLVSFARDRG 126 (365)
T ss_pred HHHHHHHHcCCCcEEEEEcCCCHHHHHHHHcCCcCEEEEEEccCHHHHHHHhC------cCHHHHHHHHHHHHHHHHhCC
Confidence 4566665432 2344444334444556667899887665211 1111223 45777776555433 3346
Q ss_pred CcEEEeCCCCCC-CHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEE
Q 012478 151 IPVIGDGDNGYG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVA 229 (462)
Q Consensus 151 iPVIaD~DtGyG-~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiA 229 (462)
..|.+.+++++- ++..+.+.++.+.++|+..|.|-|.+ |. ..++++.+.|+++++.. +..+-+-.
T Consensus 127 ~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DT~-----G~------~~P~~v~~lv~~l~~~~---~v~l~~H~ 192 (365)
T TIGR02660 127 LFVSVGGEDASRADPDFLVELAEVAAEAGADRFRFADTV-----GI------LDPFSTYELVRALRQAV---DLPLEMHA 192 (365)
T ss_pred CEEEEeecCCCCCCHHHHHHHHHHHHHcCcCEEEEcccC-----CC------CCHHHHHHHHHHHHHhc---CCeEEEEe
Confidence 778888888754 57889999999999999999999985 43 34566777777666442 22333333
Q ss_pred ecchhhcccHHHHHHHHHHhHhcCCcEE
Q 012478 230 RTDSRQALSLEESLRRSRAFADAGADVL 257 (462)
Q Consensus 230 RTDA~~~~gldeAI~RakAy~eAGAD~I 257 (462)
..| +.-|+.-+.+..+|||+.|
T Consensus 193 HNd------~GlA~ANalaA~~aGa~~v 214 (365)
T TIGR02660 193 HND------LGMATANTLAAVRAGATHV 214 (365)
T ss_pred cCC------CChHHHHHHHHHHhCCCEE
Confidence 333 3345777888889999964
No 278
>KOG1260 consensus Isocitrate lyase [Energy production and conversion]
Probab=91.65 E-value=0.27 Score=52.82 Aligned_cols=90 Identities=26% Similarity=0.330 Sum_probs=75.7
Q ss_pred HHHHHHHHHHhHhcCCcEEEecCC-CCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHH--------------HHhcC
Q 012478 239 LEESLRRSRAFADAGADVLFIDAL-ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLE--------------LEELG 303 (462)
Q Consensus 239 ldeAI~RakAy~eAGAD~Ifie~~-~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~e--------------L~~lG 303 (462)
..+.|+|+.+|+-- +|+++.|.- ++.+++++|.+.+.. -.|.+|+.. +.+|.++... |+++|
T Consensus 336 ~q~~I~rai~fApy-~d~~w~et~~pd~~eakeFsegv~~-~~pd~m~ay-~~sPsfn~~~a~~~~~Q~~~f~~~l~~~G 412 (492)
T KOG1260|consen 336 IQEEIGRAIAFAPY-ADLIWMETSYPDRQEAKEFSEGVKK-QYPDSMLAY-NFSPSFNWKKAGFSDEQLVAFDDDLGKMG 412 (492)
T ss_pred HHHHHHHHHccCch-hhhhhhhcCCCCHHHHHHHHHHhhh-cChhhHhhh-cCCCCCCcccccCCHHHHHhhhhhHhhcC
Confidence 78899999988766 999999976 588999999998764 346778876 6778766555 99999
Q ss_pred CCEEeccchHHHHHHHHHHHHHHHHHcC
Q 012478 304 FKLVAYPLSLIGVSVRAMQDALTAIKGG 331 (462)
Q Consensus 304 v~~V~yp~~ll~aa~~Am~~~l~~l~~g 331 (462)
|.....++..+.+-..++-+....+++.
T Consensus 413 ~~~q~itla~~~~~~~a~~d~~~~~k~d 440 (492)
T KOG1260|consen 413 FILQVITLAGLHANRNAFVDLSNIFKKD 440 (492)
T ss_pred eEEEEeehhHhcccchhHHHHHHHHHhc
Confidence 9999999999999999999999988763
No 279
>cd03327 MR_like_2 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 2. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=91.62 E-value=2.7 Score=43.26 Aligned_cols=116 Identities=18% Similarity=0.258 Sum_probs=77.4
Q ss_pred CCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEE
Q 012478 150 SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVA 229 (462)
Q Consensus 150 ~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiA 229 (462)
.+|+-+=. .++.++....+.++++.+.|..++||-= |+.....-.+.++-+++|++++++. |+++.|
T Consensus 108 ~i~~y~~~-~~~~~~~~~~~~a~~~~~~Gf~~~Kikv-------g~~~~~~~~~~~~d~~~v~avr~~~---g~~~~l-- 174 (341)
T cd03327 108 KIPAYASG-LYPTDLDELPDEAKEYLKEGYRGMKMRF-------GYGPSDGHAGLRKNVELVRAIREAV---GYDVDL-- 174 (341)
T ss_pred ceEEEEEC-CCCCCHHHHHHHHHHHHHcCCCEEEECC-------CCCCCcchHHHHHHHHHHHHHHHHh---CCCCcE--
Confidence 36665421 1234666777788888889999999942 2100000112456688888887763 666655
Q ss_pred ecchhhcccHHHHHHHHHHhHhcCCcEEEecCC---CCHHHHHHHHHhCCCCcee
Q 012478 230 RTDSRQALSLEESLRRSRAFADAGADVLFIDAL---ASKEEMKAFCEISPLVPKM 281 (462)
Q Consensus 230 RTDA~~~~gldeAI~RakAy~eAGAD~Ifie~~---~s~eei~~i~~~v~~vP~~ 281 (462)
+-|+-...++++|++.++++.+.+ ..|+|-+ .+.+.++++.+..+ +|+.
T Consensus 175 ~vDan~~~~~~~A~~~~~~l~~~~--~~~iEeP~~~~d~~~~~~l~~~~~-~pIa 226 (341)
T cd03327 175 MLDCYMSWNLNYAIKMARALEKYE--LRWIEEPLIPDDIEGYAELKKATG-IPIS 226 (341)
T ss_pred EEECCCCCCHHHHHHHHHHhhhcC--CccccCCCCccCHHHHHHHHhcCC-CCeE
Confidence 467777788999999999999875 5688865 35678888888765 5654
No 280
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=91.56 E-value=0.58 Score=44.20 Aligned_cols=89 Identities=26% Similarity=0.392 Sum_probs=52.3
Q ss_pred HHHHHHHHHhhCC-CeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEecCCCCHHHHHHHHH---hCCCCceeeeeee
Q 012478 211 IKAAVDARKESGS-DIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCE---ISPLVPKMANMLE 286 (462)
Q Consensus 211 I~AA~~Ar~~~g~-d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~---~v~~vP~~~N~l~ 286 (462)
|..++.+.++..+ ...|.-.++. ++ .+..+.++|+|.|.++-. ++++++++++ ..+ |.. -+..
T Consensus 66 i~~av~~~~~~~~~~~~I~VEv~~-----~e----e~~ea~~~g~d~I~lD~~-~~~~~~~~v~~l~~~~--~~v-~ie~ 132 (169)
T PF01729_consen 66 IEEAVKAARQAAPEKKKIEVEVEN-----LE----EAEEALEAGADIIMLDNM-SPEDLKEAVEELRELN--PRV-KIEA 132 (169)
T ss_dssp HHHHHHHHHHHSTTTSEEEEEESS-----HH----HHHHHHHTT-SEEEEES--CHHHHHHHHHHHHHHT--TTS-EEEE
T ss_pred HHHHHHHHHHhCCCCceEEEEcCC-----HH----HHHHHHHhCCCEEEecCc-CHHHHHHHHHHHhhcC--CcE-EEEE
Confidence 4444444333223 3335555554 23 355567799999999987 4588888887 333 221 1222
Q ss_pred cCCCCCCCCHHHHHhcCCCEEeccchH
Q 012478 287 GGGKTPILNPLELEELGFKLVAYPLSL 313 (462)
Q Consensus 287 ~~g~tP~ls~~eL~~lGv~~V~yp~~l 313 (462)
.||-++ -+..++.+.|+..++.+...
T Consensus 133 SGGI~~-~ni~~ya~~gvD~isvg~~~ 158 (169)
T PF01729_consen 133 SGGITL-ENIAEYAKTGVDVISVGSLT 158 (169)
T ss_dssp ESSSST-TTHHHHHHTT-SEEEECHHH
T ss_pred ECCCCH-HHHHHHHhcCCCEEEcChhh
Confidence 235443 48899999999999887643
No 281
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=91.54 E-value=1.6 Score=44.44 Aligned_cols=43 Identities=30% Similarity=0.411 Sum_probs=35.3
Q ss_pred HHHHHhHhcCCcEEEecCCCCHHHHHHHHHhCC----CCceeeeeee
Q 012478 244 RRSRAFADAGADVLFIDALASKEEMKAFCEISP----LVPKMANMLE 286 (462)
Q Consensus 244 ~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~----~vP~~~N~l~ 286 (462)
++++++.++|+|+|++|.+++.+|++.+++.+. ..|.++++.-
T Consensus 144 ~q~~~l~~~gvD~i~~ET~~~~~E~~~~~~~~~~~~~~~pv~is~~~ 190 (304)
T PRK09485 144 PRIEALAEAGADLLACETIPNLDEAEALVELLKEEFPGVPAWLSFTL 190 (304)
T ss_pred HHHHHHhhCCCCEEEEeccCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 558899999999999999999999987775432 5788888764
No 282
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=91.53 E-value=1.6 Score=44.44 Aligned_cols=90 Identities=23% Similarity=0.299 Sum_probs=56.4
Q ss_pred HHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEecCCCCHHHHHHHHHhCCC---Cceeeeeeec
Q 012478 211 IKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPL---VPKMANMLEG 287 (462)
Q Consensus 211 I~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~---vP~~~N~l~~ 287 (462)
|..++...+...+...|.-.+|. ++.++.+.++|||+|+++.+ ++++++++++.+.. -|... +...
T Consensus 169 i~~av~~~r~~~~~~kIeVEv~~---------leea~~a~~agaDiI~LDn~-~~e~l~~~v~~l~~~~~~~~~~-leaS 237 (278)
T PRK08385 169 LEEAIRRAKEFSVYKVVEVEVES---------LEDALKAAKAGADIIMLDNM-TPEEIREVIEALKREGLRERVK-IEVS 237 (278)
T ss_pred HHHHHHHHHHhCCCCcEEEEeCC---------HHHHHHHHHcCcCEEEECCC-CHHHHHHHHHHHHhcCcCCCEE-EEEE
Confidence 44444333333455667666654 33566678899999999987 56888888875421 02221 2222
Q ss_pred CCCCCCCCHHHHHhcCCCEEeccch
Q 012478 288 GGKTPILNPLELEELGFKLVAYPLS 312 (462)
Q Consensus 288 ~g~tP~ls~~eL~~lGv~~V~yp~~ 312 (462)
||-+ .-+.+++.+.|+..++.+..
T Consensus 238 GGI~-~~ni~~yA~tGvD~Is~gal 261 (278)
T PRK08385 238 GGIT-PENIEEYAKLDVDVISLGAL 261 (278)
T ss_pred CCCC-HHHHHHHHHcCCCEEEeChh
Confidence 3433 24678999999999998763
No 283
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=91.53 E-value=2.2 Score=43.15 Aligned_cols=159 Identities=18% Similarity=0.131 Sum_probs=83.5
Q ss_pred HHHHHHHhCCcEEEeccHHHHhhhccCC---CCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHHh
Q 012478 101 SAKLVEKSGFSFCFTSGFSISAARLALP---DTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKA 177 (462)
Q Consensus 101 SArl~e~aGfdaI~vSG~avSas~lG~P---D~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~A 177 (462)
-|+.+++.|+|+|.+.=+. ..| +.+..+..-|-..++.+.+.+++|+=++.=.- ++ .....-...+
T Consensus 33 ea~~l~~~GvD~viveN~~------d~P~~~~~~p~tva~m~~i~~~v~~~~~~p~GvnvL~n--d~---~aal~iA~a~ 101 (257)
T TIGR00259 33 DAMALEEGGVDAVMFENFF------DAPFLKEVDPETVAAMAVIAGQLKSDVSIPLGINVLRN--DA---VAALAIAMAV 101 (257)
T ss_pred HHHHHHhCCCCEEEEecCC------CCCCcCCCCHHHHHHHHHHHHHHHHhcCCCeeeeeecC--CC---HHHHHHHHHh
Confidence 4678889999999997433 233 34444555666677778888888943332221 11 1111222235
Q ss_pred CccEEEeCCCCCCCCCCCCCCC-cccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchh-----hcccHHHHHHHHHHhHh
Q 012478 178 GFAGIILEDQVSPKGCGHTRGR-KVVSREEAVMRIKAAVDARKESGSDIVIVARTDSR-----QALSLEESLRRSRAFAD 251 (462)
Q Consensus 178 GaaGI~IEDq~~PKrCGH~~gk-~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~-----~~~gldeAI~RakAy~e 251 (462)
|++=|.+|-- ||+...- -++.. .-..+..-|+.++.+..|.|-.... ...+++|+.+.+. ..
T Consensus 102 ga~FIRv~~~-----~g~~~~d~G~~~~-----~a~e~~r~r~~l~~~v~i~adV~~kh~~~l~~~~~~e~a~~~~--~~ 169 (257)
T TIGR00259 102 GAKFIRVNVL-----TGVYASDQGIIEG-----NAGELIRYKKLLGSEVKILADIVVKHAVHLGNRDLESIALDTV--ER 169 (257)
T ss_pred CCCEEEEccE-----eeeEecccccccc-----cHHHHHHHHHHcCCCcEEEeceeecccCcCCCCCHHHHHHHHH--Hh
Confidence 6655555421 2322100 01110 1111122233345567777654332 2235666554432 22
Q ss_pred cCCcEEEecCC-----CCHHHHHHHHHhCCCCceee
Q 012478 252 AGADVLFIDAL-----ASKEEMKAFCEISPLVPKMA 282 (462)
Q Consensus 252 AGAD~Ifie~~-----~s~eei~~i~~~v~~vP~~~ 282 (462)
.+||+|++-+. .+.++++++.+..+.+|.++
T Consensus 170 ~~aDavivtG~~TG~~~d~~~l~~vr~~~~~~Pvll 205 (257)
T TIGR00259 170 GLADAVILSGKTTGTEVDLELLKLAKETVKDTPVLA 205 (257)
T ss_pred cCCCEEEECcCCCCCCCCHHHHHHHHhccCCCeEEE
Confidence 34999999875 46788888877665567543
No 284
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=91.49 E-value=1.2 Score=47.78 Aligned_cols=99 Identities=14% Similarity=0.063 Sum_probs=59.6
Q ss_pred HHHHHHHhC-CC-ceEecccCChHHHHHHHHhCCcEEEec-cHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEE
Q 012478 79 KSLRQILEL-PG-VHQGPACFDALSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIG 155 (462)
Q Consensus 79 ~~LR~ll~~-~~-~iv~p~ayDalSArl~e~aGfdaI~vS-G~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIa 155 (462)
+.++++.+. ++ .+++.++-..-.|+.+.++|+|+|-++ |-+..+... ..+....+.-+.+..+..+++..++|||+
T Consensus 183 ~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aGaD~I~vG~g~Gs~c~tr-~~~g~g~p~ltai~~v~~~~~~~~vpVIA 261 (404)
T PRK06843 183 ELVKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPGSICTTR-IVAGVGVPQITAICDVYEVCKNTNICIIA 261 (404)
T ss_pred HHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcCCCEEEECCCCCcCCcce-eecCCCCChHHHHHHHHHHHhhcCCeEEE
Confidence 344444432 23 466889999999999999999999876 322111100 11111122222333445566677899998
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhCccEEEe
Q 012478 156 DGDNGYGNAMNVKRTVKGYIKAGFAGIIL 184 (462)
Q Consensus 156 D~DtGyG~~~nv~rtVk~l~~AGaaGI~I 184 (462)
|. |+.++.++. +...+||.+|.+
T Consensus 262 dG--GI~~~~Di~----KALalGA~aVmv 284 (404)
T PRK06843 262 DG--GIRFSGDVV----KAIAAGADSVMI 284 (404)
T ss_pred eC--CCCCHHHHH----HHHHcCCCEEEE
Confidence 84 444555555 334589999998
No 285
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=91.46 E-value=0.88 Score=46.51 Aligned_cols=125 Identities=17% Similarity=0.175 Sum_probs=71.5
Q ss_pred HHHHHHHHHHhCccEEE---eCCCCCCCCCCCCCCCccc-CHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHH
Q 012478 167 VKRTVKGYIKAGFAGII---LEDQVSPKGCGHTRGRKVV-SREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (462)
Q Consensus 167 v~rtVk~l~~AGaaGI~---IEDq~~PKrCGH~~gk~Lv-p~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeA 242 (462)
.....|....+|-...| |-|.+.-|.. |.. +. +.+.+.+.|+++++. .++..|.--.+ .
T Consensus 136 ~R~l~k~AV~~GGg~~HR~gLsd~vLikdN-Hi~---~~g~~~~i~~av~~~r~~----~~~~kIeVEv~---------t 198 (284)
T PRK06096 136 TRLLATQAVLAAGGLIHRAGCAETILLFAN-HRH---FLHDPQDWSGAINQLRRH----APEKKIVVEAD---------T 198 (284)
T ss_pred hhHHHHHHHHcCCCcCccCCcchhhhhHHH-HHH---HhCCcccHHHHHHHHHHh----CCCCCEEEECC---------C
Confidence 34455666788888887 7676644321 321 00 001222233333322 23444544443 2
Q ss_pred HHHHHHhHhcCCcEEEecCCCCHHHHHHHHHhCCC-CceeeeeeecCCCCCCCCHHHHHhcCCCEEeccc
Q 012478 243 LRRSRAFADAGADVLFIDALASKEEMKAFCEISPL-VPKMANMLEGGGKTPILNPLELEELGFKLVAYPL 311 (462)
Q Consensus 243 I~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~-vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~ 311 (462)
+++++.+.++|||.|+++-. ++++++++++.++. -|... +-..||-++ =+..++.+.|+..++.+.
T Consensus 199 leqa~ea~~agaDiI~LDn~-~~e~l~~av~~~~~~~~~~~-leaSGGI~~-~ni~~yA~tGvD~Is~ga 265 (284)
T PRK06096 199 PKEAIAALRAQPDVLQLDKF-SPQQATEIAQIAPSLAPHCT-LSLAGGINL-NTLKNYADCGIRLFITSA 265 (284)
T ss_pred HHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhhccCCCeE-EEEECCCCH-HHHHHHHhcCCCEEEECc
Confidence 55677788999999999876 45888888876531 12221 112234333 367899999999998865
No 286
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=91.45 E-value=3.6 Score=42.33 Aligned_cols=155 Identities=15% Similarity=0.149 Sum_probs=82.7
Q ss_pred HHHHHHHhC--CcEEEec-cHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcC-----CcEEEeCCCCCCCHHHHHHHHH
Q 012478 101 SAKLVEKSG--FSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVS-----IPVIGDGDNGYGNAMNVKRTVK 172 (462)
Q Consensus 101 SArl~e~aG--fdaI~vS-G~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~-----iPVIaD~DtGyG~~~nv~rtVk 172 (462)
.+.++++++ +|++=+- |.-.. -|... .-..+.+.+.++.+.+.++ +||++=+.-++ +..++.+.++
T Consensus 150 ~~~~~~~~~~~ad~ielN~scP~~---~g~~~--~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~-~~~~~~~ia~ 223 (327)
T cd04738 150 YVIGVRKLGPYADYLVVNVSSPNT---PGLRD--LQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDL-SDEELEDIAD 223 (327)
T ss_pred HHHHHHHHHhhCCEEEEECCCCCC---Ccccc--ccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCC-CHHHHHHHHH
Confidence 455556654 6766553 22211 12222 2344555566677766665 99999987543 3456778889
Q ss_pred HHHHhCccEEEeCCCCC--------CCC--CCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHH
Q 012478 173 GYIKAGFAGIILEDQVS--------PKG--CGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (462)
Q Consensus 173 ~l~~AGaaGI~IEDq~~--------PKr--CGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeA 242 (462)
.++++||+||.+-.... +.. .|-..|..+.|. ..+.|+.++++ .+.++-|++=..-. ..+
T Consensus 224 ~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~--~l~~v~~l~~~---~~~~ipIi~~GGI~---t~~-- 293 (327)
T cd04738 224 VALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKER--STEVLRELYKL---TGGKIPIIGVGGIS---SGE-- 293 (327)
T ss_pred HHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHH--HHHHHHHHHHH---hCCCCcEEEECCCC---CHH--
Confidence 99999999999865431 001 111223333221 12233333332 22356666644332 223
Q ss_pred HHHHHHhHhcCCcEEEecCC--C-CHHHHHHHHH
Q 012478 243 LRRSRAFADAGADVLFIDAL--A-SKEEMKAFCE 273 (462)
Q Consensus 243 I~RakAy~eAGAD~Ifie~~--~-s~eei~~i~~ 273 (462)
.+..+..+|||+|.+-.. . .+..+.++.+
T Consensus 294 --da~e~l~aGAd~V~vg~~~~~~gP~~~~~i~~ 325 (327)
T cd04738 294 --DAYEKIRAGASLVQLYTGLVYEGPGLVKRIKR 325 (327)
T ss_pred --HHHHHHHcCCCHHhccHHHHhhCcHHHHHHHh
Confidence 456666799999987421 2 2455555544
No 287
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=91.40 E-value=3 Score=43.78 Aligned_cols=207 Identities=15% Similarity=0.144 Sum_probs=116.0
Q ss_pred HHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccE
Q 012478 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAG 181 (462)
Q Consensus 102 Arl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaG 181 (462)
|+.+.++|++.|=++++. + ---.|-.. .-.|.+..++.+. ...++.++ .+ .+-+++..++|+..
T Consensus 74 a~~L~~~GV~~IEvGs~v-s--pk~vPqma--d~~ev~~~i~~~~-~~~~~~l~------~n----~~die~A~~~g~~~ 137 (347)
T PLN02746 74 IQRLVSSGLPVVEATSFV-S--PKWVPQLA--DAKDVMAAVRNLE-GARFPVLT------PN----LKGFEAAIAAGAKE 137 (347)
T ss_pred HHHHHHcCCCEEEECCCc-C--cccccccc--cHHHHHHHHHhcc-CCceeEEc------CC----HHHHHHHHHcCcCE
Confidence 566778999999998753 2 12244332 4445655555432 22344443 13 34455667899999
Q ss_pred EEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEE-EEec---chhhcccHHHHHHHHHHhHhcCCcEE
Q 012478 182 IILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVI-VART---DSRQALSLEESLRRSRAFADAGADVL 257 (462)
Q Consensus 182 I~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vI-iART---DA~~~~gldeAI~RakAy~eAGAD~I 257 (462)
|+|-=.+.+ .|...+-=.+.+|.+++++.+++..++.|..+.+ +.-+ .-....+.+..++-++.+.++|||.|
T Consensus 138 v~i~~s~Sd---~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~Gad~I 214 (347)
T PLN02746 138 VAVFASASE---SFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDMGCYEI 214 (347)
T ss_pred EEEEEecCH---HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHcCCCEE
Confidence 998643322 1332222246789999998888777765432210 1111 11122357888999999999999999
Q ss_pred Eec---CCCCHHHHHHHHHhCCC-Cce-eeeeeecCCCCCCCCH---HHHHhcCCCEEeccchHHH--------HHHHHH
Q 012478 258 FID---ALASKEEMKAFCEISPL-VPK-MANMLEGGGKTPILNP---LELEELGFKLVAYPLSLIG--------VSVRAM 321 (462)
Q Consensus 258 fie---~~~s~eei~~i~~~v~~-vP~-~~N~l~~~g~tP~ls~---~eL~~lGv~~V~yp~~ll~--------aa~~Am 321 (462)
.+- |.-++.++.++.+.+.. +|. ++.+ ... .+..+.. -.--+.|++.+--....+. +..-++
T Consensus 215 ~l~DT~G~a~P~~v~~lv~~l~~~~~~~~i~~-H~H-nd~GlA~AN~lAA~~aGa~~vd~sv~GlGecPfa~graGN~at 292 (347)
T PLN02746 215 SLGDTIGVGTPGTVVPMLEAVMAVVPVDKLAV-HFH-DTYGQALANILVSLQMGISTVDSSVAGLGGCPYAKGASGNVAT 292 (347)
T ss_pred EecCCcCCcCHHHHHHHHHHHHHhCCCCeEEE-EEC-CCCChHHHHHHHHHHhCCCEEEEecccccCCCCCCCCCCChhH
Confidence 874 44567777777765321 222 2322 221 1223322 2234567777765554433 344555
Q ss_pred HHHHHHHH
Q 012478 322 QDALTAIK 329 (462)
Q Consensus 322 ~~~l~~l~ 329 (462)
++.+..|.
T Consensus 293 E~lv~~L~ 300 (347)
T PLN02746 293 EDVVYMLN 300 (347)
T ss_pred HHHHHHHH
Confidence 55555554
No 288
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=91.35 E-value=1.1 Score=45.97 Aligned_cols=74 Identities=18% Similarity=0.212 Sum_probs=50.7
Q ss_pred CeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEecCCCCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcC
Q 012478 224 DIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELG 303 (462)
Q Consensus 224 d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lG 303 (462)
...|.-..|. ++.++.+.++|||+|+++-. +++++++.++.++. ... +-..||-+ .-+..++.+.|
T Consensus 197 ~~kIeVEv~t---------leea~~a~~agaDiImLDnm-spe~l~~av~~~~~-~~~--leaSGGI~-~~ni~~yA~tG 262 (290)
T PRK06559 197 VKMVEVEVES---------LAAAEEAAAAGADIIMLDNM-SLEQIEQAITLIAG-RSR--IECSGNID-MTTISRFRGLA 262 (290)
T ss_pred CCeEEEECCC---------HHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhcC-ceE--EEEECCCC-HHHHHHHHhcC
Confidence 4456555543 34566677899999999987 45899999987653 122 11223433 34678999999
Q ss_pred CCEEeccc
Q 012478 304 FKLVAYPL 311 (462)
Q Consensus 304 v~~V~yp~ 311 (462)
++.++.+.
T Consensus 263 VD~Is~ga 270 (290)
T PRK06559 263 IDYVSSGS 270 (290)
T ss_pred CCEEEeCc
Confidence 99999876
No 289
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=91.34 E-value=0.99 Score=49.31 Aligned_cols=94 Identities=18% Similarity=0.200 Sum_probs=60.6
Q ss_pred HHHHHHHhC-CC-ceEecccCChHHHHHHHHhCCcEEEec-cHHHHh-h----hccCCCCCCCCHHHHHHHHHHHHhhcC
Q 012478 79 KSLRQILEL-PG-VHQGPACFDALSAKLVEKSGFSFCFTS-GFSISA-A----RLALPDTGFISYGEMVDQGQLITQAVS 150 (462)
Q Consensus 79 ~~LR~ll~~-~~-~iv~p~ayDalSArl~e~aGfdaI~vS-G~avSa-s----~lG~PD~g~vsl~Eml~~~~~I~ra~~ 150 (462)
+.++++.+. ++ ++.+-++-+.-.|+.+.++|+|+|.++ |.+-.. + -.|.|.. ..+..+..+++..+
T Consensus 271 ~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~------~ai~~~~~~~~~~~ 344 (495)
T PTZ00314 271 DMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQA------SAVYHVARYARERG 344 (495)
T ss_pred HHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCCcccccchhccCCCChH------HHHHHHHHHHhhcC
Confidence 355555544 33 455558999999999999999999876 322111 1 1244532 34445566677778
Q ss_pred CcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEe
Q 012478 151 IPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIIL 184 (462)
Q Consensus 151 iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~I 184 (462)
+|||+|. |..++.++. |. ..+||++|.+
T Consensus 345 v~vIadG--Gi~~~~di~---kA-la~GA~~Vm~ 372 (495)
T PTZ00314 345 VPCIADG--GIKNSGDIC---KA-LALGADCVML 372 (495)
T ss_pred CeEEecC--CCCCHHHHH---HH-HHcCCCEEEE
Confidence 9999983 444554554 33 3589999999
No 290
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=91.30 E-value=1.1 Score=47.49 Aligned_cols=92 Identities=10% Similarity=0.039 Sum_probs=59.9
Q ss_pred HHHHHHHHhCCCceEecccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeC
Q 012478 78 AKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDG 157 (462)
Q Consensus 78 a~~LR~ll~~~~~iv~p~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~ 157 (462)
-+.|++.. +.++++-|+-+.-.|+.+.++|+|+|.+|+.+- ...|.+.-+++-+.+..+.+. ..+||++|.
T Consensus 245 i~~lr~~~--~~pvivKgV~~~~dA~~a~~~G~d~I~vsnhGG-----r~~d~~~~t~~~L~ei~~~~~--~~~~vi~dG 315 (383)
T cd03332 245 LAFLREWT--DLPIVLKGILHPDDARRAVEAGVDGVVVSNHGG-----RQVDGSIAALDALPEIVEAVG--DRLTVLFDS 315 (383)
T ss_pred HHHHHHhc--CCCEEEecCCCHHHHHHHHHCCCCEEEEcCCCC-----cCCCCCcCHHHHHHHHHHHhc--CCCeEEEeC
Confidence 34455433 568999999999999999999999999996441 123555444444333333221 249999984
Q ss_pred CCCCCCHHHHHHHHHHHHHhCccEEEe
Q 012478 158 DNGYGNAMNVKRTVKGYIKAGFAGIIL 184 (462)
Q Consensus 158 DtGyG~~~nv~rtVk~l~~AGaaGI~I 184 (462)
--- +..++. +....||.+|.|
T Consensus 316 GIr--~G~Dv~----KALaLGA~~v~i 336 (383)
T cd03332 316 GVR--TGADIM----KALALGAKAVLI 336 (383)
T ss_pred CcC--cHHHHH----HHHHcCCCEEEE
Confidence 333 333444 333579999988
No 291
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=91.28 E-value=3.6 Score=42.96 Aligned_cols=173 Identities=16% Similarity=0.217 Sum_probs=100.0
Q ss_pred ccccCCCCCccceeecceeeeeccch--hhhhhcccCCCCceeecccccCCCccccccCchHHHHHHHHhCCCceE-ecc
Q 012478 19 LFHSNSRPSSFLGINNNTISFNKTNT--NTLLLNTATNPGTINRTRVYRKNSTGVEACLSPAKSLRQILELPGVHQ-GPA 95 (462)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~Pr~~~~~R~y~rgs~~~~~a~~~a~~LR~ll~~~~~iv-~p~ 95 (462)
+|-..-+++.+-+++|-+=-.+-+.+ ...+.+.+..-.|..+.-.--+-.+-.+ -...-++-++|.++ +..+ ..+
T Consensus 127 ~~~~~~~~~~~~~lpNTag~~ta~eAv~~a~lare~~~~~~iKlEvi~e~~~llpd-~~~~v~aa~~L~~~-Gf~v~~yc 204 (326)
T PRK11840 127 MLTDYIDPKKYTYLPNTAGCYTAEEAVRTLRLAREAGGWDLVKLEVLGDAKTLYPD-MVETLKATEILVKE-GFQVMVYC 204 (326)
T ss_pred hHHHhhhhcCCEECccCCCCCCHHHHHHHHHHHHHhcCCCeEEEEEcCCCCCcccC-HHHHHHHHHHHHHC-CCEEEEEe
Confidence 34444455667777876644433322 1234444566678666433321111111 11223445555554 4666 558
Q ss_pred cCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHH
Q 012478 96 CFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYI 175 (462)
Q Consensus 96 ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~ 175 (462)
+=|...|+.++++|+-++.--+.-+. +-.|+. -.+..+.+.+..++|||+| .|-|.+.+++. ..
T Consensus 205 ~~d~~~a~~l~~~g~~avmPl~~pIG-sg~gv~---------~p~~i~~~~e~~~vpVivd--AGIg~~sda~~----Am 268 (326)
T PRK11840 205 SDDPIAAKRLEDAGAVAVMPLGAPIG-SGLGIQ---------NPYTIRLIVEGATVPVLVD--AGVGTASDAAV----AM 268 (326)
T ss_pred CCCHHHHHHHHhcCCEEEeecccccc-CCCCCC---------CHHHHHHHHHcCCCcEEEe--CCCCCHHHHHH----HH
Confidence 88999999999999955554232221 222322 2345566666678999999 56777777764 44
Q ss_pred HhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHH
Q 012478 176 KAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARK 219 (462)
Q Consensus 176 ~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~ 219 (462)
+.|++||-+--.+. .. -++-.|++-.+.|++|.+
T Consensus 269 elGadgVL~nSaIa------~a----~dPv~Ma~A~~~av~aGr 302 (326)
T PRK11840 269 ELGCDGVLMNTAIA------EA----KNPVLMARAMKLAVEAGR 302 (326)
T ss_pred HcCCCEEEEcceec------cC----CCHHHHHHHHHHHHHHHH
Confidence 78999999966542 01 134467777777877765
No 292
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=91.24 E-value=6.3 Score=40.66 Aligned_cols=78 Identities=19% Similarity=0.218 Sum_probs=54.9
Q ss_pred HHHHHHHhCCcEEEec-cHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHHhCc
Q 012478 101 SAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGF 179 (462)
Q Consensus 101 SArl~e~aGfdaI~vS-G~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~AGa 179 (462)
-++.++..+.+++.+. .... .+..|.. .-.++.+++.++.|.+.+++||++=. .|+|.. .+.++.++++|+
T Consensus 132 ~~~~i~~~~adalel~l~~~q---~~~~~~~-~~df~~~~~~i~~l~~~~~vPVivK~-~g~g~s---~~~a~~l~~~Gv 203 (326)
T cd02811 132 ARRAVEMIEADALAIHLNPLQ---EAVQPEG-DRDFRGWLERIEELVKALSVPVIVKE-VGFGIS---RETAKRLADAGV 203 (326)
T ss_pred HHHHHHhcCCCcEEEeCcchH---hhcCCCC-CcCHHHHHHHHHHHHHhcCCCEEEEe-cCCCCC---HHHHHHHHHcCC
Confidence 3456667788888875 2211 1344442 23577788999999999999999864 456543 466788999999
Q ss_pred cEEEeCC
Q 012478 180 AGIILED 186 (462)
Q Consensus 180 aGI~IED 186 (462)
++|.+-.
T Consensus 204 d~I~vsG 210 (326)
T cd02811 204 KAIDVAG 210 (326)
T ss_pred CEEEECC
Confidence 9999944
No 293
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=91.23 E-value=5.2 Score=41.22 Aligned_cols=151 Identities=15% Similarity=0.133 Sum_probs=81.6
Q ss_pred HHHHHHHhCCcEEEec-cHHHHh-hhccCCCCCCCCHHHHHHHHHHHHhhc--CCcEEEeCCCCCCCHHHHHHHHHHHHH
Q 012478 101 SAKLVEKSGFSFCFTS-GFSISA-ARLALPDTGFISYGEMVDQGQLITQAV--SIPVIGDGDNGYGNAMNVKRTVKGYIK 176 (462)
Q Consensus 101 SArl~e~aGfdaI~vS-G~avSa-s~lG~PD~g~vsl~Eml~~~~~I~ra~--~iPVIaD~DtGyG~~~nv~rtVk~l~~ 176 (462)
.|+.+++.|||.|=+= |.-.-- ...|.=..-+-..+-+.+.++.|.+++ ++||.+=+--|+-+.....+.++.+++
T Consensus 80 aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~ 159 (312)
T PRK10550 80 NAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADAVQQ 159 (312)
T ss_pred HHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHHHHHh
Confidence 4667788898887654 211000 011110000112344555667777766 499999988887554446788899999
Q ss_pred hCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHh-HhcCCc
Q 012478 177 AGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAF-ADAGAD 255 (462)
Q Consensus 177 AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy-~eAGAD 255 (462)
+|++.|+|-..+. .-|.. |.. +.. +.+.+|+. + .++-|++--|-.. .+.++.+ .+.|||
T Consensus 160 ~Gvd~i~Vh~Rt~--~~~y~-g~~-~~~-~~i~~ik~---~-----~~iPVi~nGdI~t-------~~da~~~l~~~g~D 219 (312)
T PRK10550 160 AGATELVVHGRTK--EDGYR-AEH-INW-QAIGEIRQ---R-----LTIPVIANGEIWD-------WQSAQQCMAITGCD 219 (312)
T ss_pred cCCCEEEECCCCC--ccCCC-CCc-ccH-HHHHHHHh---h-----cCCcEEEeCCcCC-------HHHHHHHHhccCCC
Confidence 9999999965431 11111 111 122 34444443 2 2344555444332 1233333 357999
Q ss_pred EEEec--CCCCHHHHHHH
Q 012478 256 VLFID--ALASKEEMKAF 271 (462)
Q Consensus 256 ~Ifie--~~~s~eei~~i 271 (462)
+|++- .+.++..++++
T Consensus 220 gVmiGRg~l~nP~lf~~~ 237 (312)
T PRK10550 220 AVMIGRGALNIPNLSRVV 237 (312)
T ss_pred EEEEcHHhHhCcHHHHHh
Confidence 99983 34444444444
No 294
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=91.23 E-value=6.8 Score=36.90 Aligned_cols=142 Identities=15% Similarity=0.165 Sum_probs=78.5
Q ss_pred HHHHHHhh-cCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHH
Q 012478 141 QGQLITQA-VSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARK 219 (462)
Q Consensus 141 ~~~~I~ra-~~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~ 219 (462)
.++.+++. .+.++++|.-.- ++.+ ..++.+.++||+.|.+--.. +.....+-++. .+
T Consensus 42 ~i~~l~~~~~~~~i~~d~k~~--d~~~--~~~~~~~~~Gad~i~vh~~~--------------~~~~~~~~i~~----~~ 99 (206)
T TIGR03128 42 AVKEMKEAFPDRKVLADLKTM--DAGE--YEAEQAFAAGADIVTVLGVA--------------DDATIKGAVKA----AK 99 (206)
T ss_pred HHHHHHHHCCCCEEEEEEeec--cchH--HHHHHHHHcCCCEEEEeccC--------------CHHHHHHHHHH----HH
Confidence 45555554 356788886221 2211 24678889999998762111 11111122222 22
Q ss_pred hhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEecC-C-------CCHHHHHHHHHhCCCCceeeeeeecCCCC
Q 012478 220 ESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDA-L-------ASKEEMKAFCEISPLVPKMANMLEGGGKT 291 (462)
Q Consensus 220 ~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~-~-------~s~eei~~i~~~v~~vP~~~N~l~~~g~t 291 (462)
+.|..+.+-.=+. .+..++++.+.+.|+|.|-++- . ...+.++++.+.++..+ -++.| |-+
T Consensus 100 ~~g~~~~~~~~~~-------~t~~~~~~~~~~~g~d~v~~~pg~~~~~~~~~~~~~i~~l~~~~~~~~---i~v~G-GI~ 168 (206)
T TIGR03128 100 KHGKEVQVDLINV-------KDKVKRAKELKELGADYIGVHTGLDEQAKGQNPFEDLQTILKLVKEAR---VAVAG-GIN 168 (206)
T ss_pred HcCCEEEEEecCC-------CChHHHHHHHHHcCCCEEEEcCCcCcccCCCCCHHHHHHHHHhcCCCc---EEEEC-CcC
Confidence 2343333311111 1234456666788999987742 1 24567788877766422 13343 543
Q ss_pred CCCCHHHHHhcCCCEEeccchHHHH
Q 012478 292 PILNPLELEELGFKLVAYPLSLIGV 316 (462)
Q Consensus 292 P~ls~~eL~~lGv~~V~yp~~ll~a 316 (462)
+ -+..++.+.|+..+..+..++.+
T Consensus 169 ~-~n~~~~~~~Ga~~v~vGsai~~~ 192 (206)
T TIGR03128 169 L-DTIPDVIKLGPDIVIVGGAITKA 192 (206)
T ss_pred H-HHHHHHHHcCCCEEEEeehhcCC
Confidence 3 36789999999999999887753
No 295
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=91.18 E-value=1.3 Score=45.34 Aligned_cols=65 Identities=29% Similarity=0.442 Sum_probs=45.7
Q ss_pred HHHHHHhHhcCCcEEEecCCCCHHHHHHHHHhCCCCceeeeeee-cCCCCCCCCHHHHHhcCCCEEeccc
Q 012478 243 LRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLE-GGGKTPILNPLELEELGFKLVAYPL 311 (462)
Q Consensus 243 I~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~l~-~~g~tP~ls~~eL~~lGv~~V~yp~ 311 (462)
++.+..+.+||||.|+++-.+ +|++++.++.+. +..-+ .+| .||-++ -+..++++.||+.+|.+.
T Consensus 198 le~~~eAl~agaDiImLDNm~-~e~~~~av~~l~-~~~~~-~lEaSGgIt~-~ni~~yA~tGVD~IS~ga 263 (280)
T COG0157 198 LEEAEEALEAGADIIMLDNMS-PEELKEAVKLLG-LAGRA-LLEASGGITL-ENIREYAETGVDVISVGA 263 (280)
T ss_pred HHHHHHHHHcCCCEEEecCCC-HHHHHHHHHHhc-cCCce-EEEEeCCCCH-HHHHHHhhcCCCEEEeCc
Confidence 445777888999999999874 589999998742 21111 223 234333 477899999999999865
No 296
>cd03323 D-glucarate_dehydratase D-Glucarate dehydratase (GlucD) catalyzes the dehydration of both D-glucarate and L-idarate to form 5-keto-4-deoxy-D-glucarate (5-KDG) , the initial reaction of the catabolic pathway for (D)-glucarate. GlucD belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=91.11 E-value=5.6 Score=42.09 Aligned_cols=98 Identities=24% Similarity=0.371 Sum_probs=70.3
Q ss_pred CHHHHHHHHHHHHH-hCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHH
Q 012478 163 NAMNVKRTVKGYIK-AGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEE 241 (462)
Q Consensus 163 ~~~nv~rtVk~l~~-AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~glde 241 (462)
+++++.+.++++.+ .|..++||-- |+. +.++-+++|++++++. +++.| +.|+-.....++
T Consensus 168 ~~e~~~~~a~~~~~~~Gf~~~KiKv-------G~~------~~~~di~~v~avRea~----~~~~l--~vDaN~~w~~~~ 228 (395)
T cd03323 168 TPEGVVRLARAAIDRYGFKSFKLKG-------GVL------PGEEEIEAVKALAEAF----PGARL--RLDPNGAWSLET 228 (395)
T ss_pred CHHHHHHHHHHHHHhcCCcEEEEec-------CCC------CHHHHHHHHHHHHHhC----CCCcE--EEeCCCCcCHHH
Confidence 56677777878774 6999999942 221 2345577888888764 24333 448877788999
Q ss_pred HHHHHHHhHhcCCcEEEecCC-CCHHHHHHHHHhCCCCceeee
Q 012478 242 SLRRSRAFADAGADVLFIDAL-ASKEEMKAFCEISPLVPKMAN 283 (462)
Q Consensus 242 AI~RakAy~eAGAD~Ifie~~-~s~eei~~i~~~v~~vP~~~N 283 (462)
|++.++++.+ +..|+|-+ ++.+.++++.+..+ +|+..+
T Consensus 229 A~~~~~~l~~---~l~~iEeP~~d~~~~~~L~~~~~-~PIa~d 267 (395)
T cd03323 229 AIRLAKELEG---VLAYLEDPCGGREGMAEFRRATG-LPLATN 267 (395)
T ss_pred HHHHHHhcCc---CCCEEECCCCCHHHHHHHHHhcC-CCEEcC
Confidence 9999999988 46688753 57888999988876 676543
No 297
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=91.10 E-value=3.9 Score=40.30 Aligned_cols=104 Identities=24% Similarity=0.261 Sum_probs=59.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCccEEEeCCC-CCCCCCCCCCCCccc-----------CHHHHHHHHHHHHHHHHhhCCCeE
Q 012478 159 NGYGNAMNVKRTVKGYIKAGFAGIILEDQ-VSPKGCGHTRGRKVV-----------SREEAVMRIKAAVDARKESGSDIV 226 (462)
Q Consensus 159 tGyG~~~nv~rtVk~l~~AGaaGI~IEDq-~~PKrCGH~~gk~Lv-----------p~ee~~~kI~AA~~Ar~~~g~d~v 226 (462)
.||-+..+..+.++.++++||+.++|.=- ..|..=|| .+- ..+...+-++..+... ...++
T Consensus 8 ~G~P~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~----~I~~a~~~al~~g~~~~~~~~~~~~vr~~~---~~pv~ 80 (242)
T cd04724 8 AGDPDLETTLEILKALVEAGADIIELGIPFSDPVADGP----VIQAASERALANGVTLKDVLELVKEIRKKN---TIPIV 80 (242)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCH----HHHHHHHHHHHcCCCHHHHHHHHHHHhhcC---CCCEE
Confidence 47878888899999999999999999510 01222222 111 1112233333333221 23455
Q ss_pred EEEecchhhcccHHHHHHHHHHhHhcCCcEEEecCCCCHHHHHHHHH
Q 012478 227 IVARTDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCE 273 (462)
Q Consensus 227 IiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~ 273 (462)
++.-.+-.-..|++.-++ .+.++|||.+.++-++- |++.++.+
T Consensus 81 lm~y~n~~~~~G~~~fi~---~~~~aG~~giiipDl~~-ee~~~~~~ 123 (242)
T cd04724 81 LMGYYNPILQYGLERFLR---DAKEAGVDGLIIPDLPP-EEAEEFRE 123 (242)
T ss_pred EEEecCHHHHhCHHHHHH---HHHHCCCcEEEECCCCH-HHHHHHHH
Confidence 555544434456665544 46789999999877654 45555543
No 298
>PRK08227 autoinducer 2 aldolase; Validated
Probab=91.02 E-value=6.3 Score=40.00 Aligned_cols=163 Identities=18% Similarity=0.193 Sum_probs=98.4
Q ss_pred CCcEEEeCCCC--CC-CH--HHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCC
Q 012478 150 SIPVIGDGDNG--YG-NA--MNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSD 224 (462)
Q Consensus 150 ~iPVIaD~DtG--yG-~~--~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d 224 (462)
++|+|+-.+.+ +. ++ ..+.-.|++.++.||+||.+-=-. | +. ...++++.+..+++.+++.|-.
T Consensus 74 ~~~lil~ls~~t~~~~~~~~~~l~~sVeeAvrlGAdAV~~~v~~-----G---s~---~E~~~l~~l~~v~~ea~~~G~P 142 (264)
T PRK08227 74 NKPVVLRASGGNSILKELSNEAVAVDMEDAVRLNACAVAAQVFI-----G---SE---YEHQSIKNIIQLVDAGLRYGMP 142 (264)
T ss_pred CCcEEEEEcCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEec-----C---CH---HHHHHHHHHHHHHHHHHHhCCc
Confidence 47788777765 22 22 345556888999999999873221 1 11 1256888888888888887766
Q ss_pred eEEE-EecchhhcccHHHHHHH-HHHhHhcCCcEEEecCCCCHHHHHHHHHhCCCCceeeeeeecCCCCCCC----CHHH
Q 012478 225 IVIV-ARTDSRQALSLEESLRR-SRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPIL----NPLE 298 (462)
Q Consensus 225 ~vIi-ARTDA~~~~gldeAI~R-akAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~l----s~~e 298 (462)
++++ .|.... ..+.+ .|.- ++..+|.|||.|=+.-.. +.++++++..| +|++ +.||.|++.. -..+
T Consensus 143 lla~~prG~~~-~~~~~-~ia~aaRiaaELGADiVK~~y~~--~~f~~vv~a~~-vPVv---iaGG~k~~~~~~L~~v~~ 214 (264)
T PRK08227 143 VMAVTAVGKDM-VRDAR-YFSLATRIAAEMGAQIIKTYYVE--EGFERITAGCP-VPIV---IAGGKKLPERDALEMCYQ 214 (264)
T ss_pred EEEEecCCCCc-CchHH-HHHHHHHHHHHHcCCEEecCCCH--HHHHHHHHcCC-CcEE---EeCCCCCCHHHHHHHHHH
Confidence 5553 232211 12333 3433 566779999999886543 78888888655 5553 4554454211 0123
Q ss_pred HHhcCCCEEeccchHHHH-HHHHHHHHHHHHHcC
Q 012478 299 LEELGFKLVAYPLSLIGV-SVRAMQDALTAIKGG 331 (462)
Q Consensus 299 L~~lGv~~V~yp~~ll~a-a~~Am~~~l~~l~~g 331 (462)
.-+.|.+-|.+|-..+.. --.+|-.++.+|-.+
T Consensus 215 ai~aGa~Gv~~GRNIfQ~~~p~~~~~al~~IVh~ 248 (264)
T PRK08227 215 AIDEGASGVDMGRNIFQSEHPVAMIKAVHAVVHE 248 (264)
T ss_pred HHHcCCceeeechhhhccCCHHHHHHHHHHHHhC
Confidence 345688888887766644 334555666666544
No 299
>cd03319 L-Ala-DL-Glu_epimerase L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=90.97 E-value=6.9 Score=39.57 Aligned_cols=131 Identities=20% Similarity=0.263 Sum_probs=84.2
Q ss_pred CcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEe
Q 012478 151 IPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVAR 230 (462)
Q Consensus 151 iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiAR 230 (462)
+|+.+-. +.+++..+.+.++++.+.|..+|+|- +|. +.++.+++|++++++. | ++.| +
T Consensus 124 ~~~~~~~--~~~~~~~~~~~~~~~~~~Gf~~iKik-------~g~-------~~~~d~~~v~~lr~~~---g-~~~l--~ 181 (316)
T cd03319 124 LETDYTI--SIDTPEAMAAAAKKAAKRGFPLLKIK-------LGG-------DLEDDIERIRAIREAA---P-DARL--R 181 (316)
T ss_pred ceeEEEE--eCCCHHHHHHHHHHHHHcCCCEEEEE-------eCC-------ChhhHHHHHHHHHHhC---C-CCeE--E
Confidence 5554432 23467777888888888999999993 232 1245578888887663 3 4433 5
Q ss_pred cchhhcccHHHHHHHHHHhHhcCCcEEEecCC---CCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHH---Hh-cC
Q 012478 231 TDSRQALSLEESLRRSRAFADAGADVLFIDAL---ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLEL---EE-LG 303 (462)
Q Consensus 231 TDA~~~~gldeAI~RakAy~eAGAD~Ifie~~---~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL---~~-lG 303 (462)
-|+......++|++.++++.+.|. .|+|-+ .+.+.++++++..+ +|+..+ +. ..+.+++ -+ -+
T Consensus 182 vD~n~~~~~~~A~~~~~~l~~~~l--~~iEeP~~~~d~~~~~~L~~~~~-ipIa~~-----E~--~~~~~~~~~~~~~~~ 251 (316)
T cd03319 182 VDANQGWTPEEAVELLRELAELGV--ELIEQPVPAGDDDGLAYLRDKSP-LPIMAD-----ES--CFSAADAARLAGGGA 251 (316)
T ss_pred EeCCCCcCHHHHHHHHHHHHhcCC--CEEECCCCCCCHHHHHHHHhcCC-CCEEEe-----CC--CCCHHHHHHHHhcCC
Confidence 566666778999999999999865 566754 35678888888765 676543 21 2344443 33 35
Q ss_pred CCEEeccchH
Q 012478 304 FKLVAYPLSL 313 (462)
Q Consensus 304 v~~V~yp~~l 313 (462)
++.|..-...
T Consensus 252 ~d~v~~~~~~ 261 (316)
T cd03319 252 YDGINIKLMK 261 (316)
T ss_pred CCEEEEeccc
Confidence 7776664443
No 300
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=90.96 E-value=16 Score=36.98 Aligned_cols=203 Identities=19% Similarity=0.277 Sum_probs=0.0
Q ss_pred HHHHHHhCCCceEec--ccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeC
Q 012478 80 SLRQILELPGVHQGP--ACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDG 157 (462)
Q Consensus 80 ~LR~ll~~~~~iv~p--~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~ 157 (462)
+|++.|..+++.+-. +.-|++++.++..+|||.+.+-+ .-...+.+.++.+.+.+......|||
T Consensus 7 ~fK~~L~~g~~qiGlw~~l~~p~~~Ei~A~aGfDwl~iD~-----------EHapnd~~sl~~qL~a~~~~~~~pvV--- 72 (255)
T COG3836 7 SFKAALAAGRPQIGLWLSLPDPYMAEILATAGFDWLLIDG-----------EHAPNDLQSLLHQLQAVAAYASPPVV--- 72 (255)
T ss_pred hHHHHHhCCCceEEeeecCCcHHHHHHHHhcCCCEEEecc-----------cccCccHHHHHHHHHHhhccCCCCee---
Q ss_pred CCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHH----------------------
Q 012478 158 DNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAV---------------------- 215 (462)
Q Consensus 158 DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~---------------------- 215 (462)
--+.+-...+|++...||.++.| |.|..-|.++.+.++.
T Consensus 73 ----R~p~g~~~~Ikq~LD~GAqtlli---------------PmV~s~eqAr~~V~A~rYPP~G~Rgvg~~~arAsr~~~ 133 (255)
T COG3836 73 ----RPPVGDPVMIKQLLDIGAQTLLI---------------PMVDTAEQARQAVAATRYPPLGERGVGSALARASRFGR 133 (255)
T ss_pred ----eCCCCCHHHHHHHHccccceeee---------------eccCCHHHHHHHHHhccCCCCCccccchhhhhhhhcCC
Q ss_pred --HHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEec-----------CCCCHHHHHHHHHhCCCCceee
Q 012478 216 --DARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFID-----------ALASKEEMKAFCEISPLVPKMA 282 (462)
Q Consensus 216 --~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie-----------~~~s~eei~~i~~~v~~vP~~~ 282 (462)
+.-...+.++++.+-.+.+....-=++|-... |.|+||+- +-+...++.+..+.. +
T Consensus 134 i~dyl~~An~~~~~lvqiEtr~gl~nLDaIaave-----GVDgvFiGPaDLaas~G~~gn~~hpeV~~aI~~~------~ 202 (255)
T COG3836 134 IADYLAQANDEICLLVQIETRAGLDNLDAIAAVE-----GVDGVFIGPADLAASLGHLGNPGHPEVQAAIEHI------I 202 (255)
T ss_pred HHHHHHhcccceEEEEEEccHHHHHHHHHHHccC-----CCCeEEECHHHHHHHcCCCCCCCCHHHHHHHHHH------H
Q ss_pred eeeecCCCCCCC------CHHHHHhcCCCEEeccch--HHHHHHHHHHHHHH
Q 012478 283 NMLEGGGKTPIL------NPLELEELGFKLVAYPLS--LIGVSVRAMQDALT 326 (462)
Q Consensus 283 N~l~~~g~tP~l------s~~eL~~lGv~~V~yp~~--ll~aa~~Am~~~l~ 326 (462)
..+...||.... -...+.++|+..+..+.- +++.+.+++...++
T Consensus 203 ~~i~aaGKaagil~~~p~~a~~yl~lGa~fvavG~D~~l~~~a~~~l~~~fk 254 (255)
T COG3836 203 ARIRAAGKAAGILAADPADARRYLALGATFVAVGSDTGLLRRAAEALLAAFK 254 (255)
T ss_pred HHHHhcCCccccccCCHHHHHHHHHhCCeEEEEeccHHHHHHHHHHHHHHhc
No 301
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=90.95 E-value=11 Score=37.41 Aligned_cols=146 Identities=14% Similarity=0.139 Sum_probs=81.3
Q ss_pred HHHHHHhCCcEEEecc---HHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHHhC
Q 012478 102 AKLVEKSGFSFCFTSG---FSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAG 178 (462)
Q Consensus 102 Arl~e~aGfdaI~vSG---~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~AG 178 (462)
++.+.++|++.|=++. .+-+....++|- .+-.|.+..++.... +..+.+=...|+++. +-+++..+.|
T Consensus 28 ~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~---~~~~e~i~~~~~~~~--~~~~~~~~~~~~~~~----~~i~~a~~~g 98 (263)
T cd07943 28 ARALDAAGVPLIEVGHGDGLGGSSLNYGFAA---HTDEEYLEAAAEALK--QAKLGVLLLPGIGTV----DDLKMAADLG 98 (263)
T ss_pred HHHHHHcCCCEEEeecCCCCCCcccccCCCC---CChHHHHHHHHHhcc--CCEEEEEecCCccCH----HHHHHHHHcC
Confidence 4567788999887761 110000112222 223344444432222 344444445677764 4456777889
Q ss_pred ccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEE
Q 012478 179 FAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLF 258 (462)
Q Consensus 179 aaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~If 258 (462)
+..|.|-+... +. ..++.+++..++.|....+.. +|+. ....++.++.+++..++|||.|.
T Consensus 99 ~~~iri~~~~s----------------~~-~~~~~~i~~ak~~G~~v~~~~-~~~~-~~~~~~~~~~~~~~~~~G~d~i~ 159 (263)
T cd07943 99 VDVVRVATHCT----------------EA-DVSEQHIGAARKLGMDVVGFL-MMSH-MASPEELAEQAKLMESYGADCVY 159 (263)
T ss_pred CCEEEEEechh----------------hH-HHHHHHHHHHHHCCCeEEEEE-Eecc-CCCHHHHHHHHHHHHHcCCCEEE
Confidence 99999965431 11 133333333333454433333 3332 23568888899999999999998
Q ss_pred ec---CCCCHHHHHHHHHhC
Q 012478 259 ID---ALASKEEMKAFCEIS 275 (462)
Q Consensus 259 ie---~~~s~eei~~i~~~v 275 (462)
+. |.-.++++.++.+.+
T Consensus 160 l~DT~G~~~P~~v~~lv~~l 179 (263)
T cd07943 160 VTDSAGAMLPDDVRERVRAL 179 (263)
T ss_pred EcCCCCCcCHHHHHHHHHHH
Confidence 74 345677777777653
No 302
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=90.75 E-value=0.8 Score=48.18 Aligned_cols=83 Identities=17% Similarity=0.148 Sum_probs=53.7
Q ss_pred ceEecccCChHHHHHHHHhCCcEEEec-cHHHHhh---h--ccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCC
Q 012478 90 VHQGPACFDALSAKLVEKSGFSFCFTS-GFSISAA---R--LALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGN 163 (462)
Q Consensus 90 ~iv~p~ayDalSArl~e~aGfdaI~vS-G~avSas---~--lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~ 163 (462)
++++=|+-++-.|+-+.++|.|+|-++ |.+-.++ . .|+| .-.-+..+...++..++|||+|..--+
T Consensus 151 ~viaGNV~T~e~a~~L~~aGad~vkVGiGpGsiCtTr~v~GvG~P------Q~tAv~~~a~~a~~~~v~iIADGGi~~-- 222 (352)
T PF00478_consen 151 PVIAGNVVTYEGAKDLIDAGADAVKVGIGPGSICTTREVTGVGVP------QLTAVYECAEAARDYGVPIIADGGIRT-- 222 (352)
T ss_dssp EEEEEEE-SHHHHHHHHHTT-SEEEESSSSSTTBHHHHHHSBSCT------HHHHHHHHHHHHHCTTSEEEEESS-SS--
T ss_pred eEEecccCCHHHHHHHHHcCCCEEEEeccCCcccccccccccCCc------HHHHHHHHHHHhhhccCceeecCCcCc--
Confidence 567779999999999999999999999 4332222 1 2455 333445555666667899999965443
Q ss_pred HHHHHHHHHHHHHhCccEEEe
Q 012478 164 AMNVKRTVKGYIKAGFAGIIL 184 (462)
Q Consensus 164 ~~nv~rtVk~l~~AGaaGI~I 184 (462)
+-++. |.| .+||+.|.+
T Consensus 223 sGDi~---KAl-a~GAd~VMl 239 (352)
T PF00478_consen 223 SGDIV---KAL-AAGADAVML 239 (352)
T ss_dssp HHHHH---HHH-HTT-SEEEE
T ss_pred cccee---eee-eecccceee
Confidence 22333 333 589999999
No 303
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=90.66 E-value=15 Score=36.17 Aligned_cols=146 Identities=20% Similarity=0.235 Sum_probs=89.3
Q ss_pred CCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEE
Q 012478 150 SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVA 229 (462)
Q Consensus 150 ~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiA 229 (462)
.+++|.|-...+..... .+.+....+.|+..+++=++. ... ... .+.+.+++.++.. .+..|+|+.
T Consensus 7 ~lylvt~~~~~~~~~~~-~~~ve~al~~Gv~~vQlR~K~------~~~-~~~---~~~a~~~~~lc~~---~~v~liINd 72 (211)
T COG0352 7 RLYLVTDRPLIYDGVDL-LEWVEAALKGGVTAVQLREKD------LSD-EEY---LALAEKLRALCQK---YGVPLIIND 72 (211)
T ss_pred ceEEEcCCccccccchh-HHHHHHHHhCCCeEEEEecCC------CCh-HHH---HHHHHHHHHHHHH---hCCeEEecC
Confidence 36677777766644322 778889999999999998874 111 000 2344455544444 457899999
Q ss_pred ecchhhc----------cc--HHH----------------HHHHHHHhHhcCCcEEEecCC-----------CCHHHHHH
Q 012478 230 RTDSRQA----------LS--LEE----------------SLRRSRAFADAGADVLFIDAL-----------ASKEEMKA 270 (462)
Q Consensus 230 RTDA~~~----------~g--lde----------------AI~RakAy~eAGAD~Ifie~~-----------~s~eei~~ 270 (462)
|.|-... .+ +.+ -++.+...++.|||.|++-.+ .-.+-++.
T Consensus 73 ~~dlA~~~~AdGVHlGq~D~~~~~ar~~~~~~~iIG~S~h~~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~ 152 (211)
T COG0352 73 RVDLALAVGADGVHLGQDDMPLAEARELLGPGLIIGLSTHDLEEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLRE 152 (211)
T ss_pred cHHHHHhCCCCEEEcCCcccchHHHHHhcCCCCEEEeecCCHHHHHHHHhcCCCEEEECCcCCCCCCCCCCccCHHHHHH
Confidence 9886310 00 000 245567777899999987532 12456666
Q ss_pred HHHhCCCCceeeeeeecCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 012478 271 FCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (462)
Q Consensus 271 i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~ll~ 315 (462)
+.+..+ +|.. .+ ||-++ -+..++.+.|+..|..=...+.
T Consensus 153 ~~~~~~-iP~v--AI--GGi~~-~nv~~v~~~Ga~gVAvvsai~~ 191 (211)
T COG0352 153 IRELVN-IPVV--AI--GGINL-ENVPEVLEAGADGVAVVSAITS 191 (211)
T ss_pred HHHhCC-CCEE--EE--cCCCH-HHHHHHHHhCCCeEEehhHhhc
Confidence 666554 5643 22 35433 3678999999998877555553
No 304
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=90.64 E-value=7.5 Score=38.96 Aligned_cols=155 Identities=17% Similarity=0.140 Sum_probs=85.6
Q ss_pred HHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEe--cchhhcccHHHHHHHH
Q 012478 169 RTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVAR--TDSRQALSLEESLRRS 246 (462)
Q Consensus 169 rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiAR--TDA~~~~gldeAI~Ra 246 (462)
+.++...++|+..|+|-.... ..|...+-=.+.++.+++++.+++..++.|....+.+= .|+. ....+..++.+
T Consensus 82 ~~~~~a~~~g~~~i~i~~~~s---d~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~~-~~~~~~~~~~~ 157 (273)
T cd07941 82 PNLQALLEAGTPVVTIFGKSW---DLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDGY-KANPEYALATL 157 (273)
T ss_pred HHHHHHHhCCCCEEEEEEcCC---HHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccccC-CCCHHHHHHHH
Confidence 456777889999999965432 12322111235678888888877777765543333211 1221 23567788899
Q ss_pred HHhHhcCCcEEEec---CCCCHHHHHHHHHhCCC-Cc-eeeeeeecCCCCCCCCH---HHHHhcCCCEEeccchH--HHH
Q 012478 247 RAFADAGADVLFID---ALASKEEMKAFCEISPL-VP-KMANMLEGGGKTPILNP---LELEELGFKLVAYPLSL--IGV 316 (462)
Q Consensus 247 kAy~eAGAD~Ifie---~~~s~eei~~i~~~v~~-vP-~~~N~l~~~g~tP~ls~---~eL~~lGv~~V~yp~~l--l~a 316 (462)
+++.++|+|.|.+. |..+++++.++.+.+.. +| .++.+ ..+ .+..+.. -+--+.|++.+--.... -++
T Consensus 158 ~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~-H~H-nd~Gla~An~laA~~aGa~~id~s~~GlGera 235 (273)
T cd07941 158 KAAAEAGADWLVLCDTNGGTLPHEIAEIVKEVRERLPGVPLGI-HAH-NDSGLAVANSLAAVEAGATQVQGTINGYGERC 235 (273)
T ss_pred HHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCCeeEE-Eec-CCCCcHHHHHHHHHHcCCCEEEEecccccccc
Confidence 99999999999875 34567777766654321 22 22322 211 1222321 22234577766533332 244
Q ss_pred HHHHHHHHHHHHH
Q 012478 317 SVRAMQDALTAIK 329 (462)
Q Consensus 317 a~~Am~~~l~~l~ 329 (462)
...+++..+..|.
T Consensus 236 Gn~~~e~~~~~L~ 248 (273)
T cd07941 236 GNANLCSIIPNLQ 248 (273)
T ss_pred ccccHHHHHHHHH
Confidence 4445555555553
No 305
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=90.60 E-value=1.3 Score=45.07 Aligned_cols=134 Identities=17% Similarity=0.193 Sum_probs=88.3
Q ss_pred HHHHHHHHhCCCceEecccCChHHHHHHHHhCCcEEEeccHHHHhhh----ccC---CCC----CCCCHHHHHHHHHHHH
Q 012478 78 AKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAAR----LAL---PDT----GFISYGEMVDQGQLIT 146 (462)
Q Consensus 78 a~~LR~ll~~~~~iv~p~ayDalSArl~e~aGfdaI~vSG~avSas~----lG~---PD~----g~vsl~Eml~~~~~I~ 146 (462)
-+-|++.-+.-+..++-.+-|.---.++.+. .|.|++++=-|.+.. +|. |=. -.-|.+|.+..++-|.
T Consensus 98 L~~l~~a~~~~Gl~vvtEvm~~~~~e~~~~y-~DilqvGARNMQNF~LLke~G~~~kPvLLKRg~~aTieEwL~AAEYI~ 176 (286)
T COG2876 98 LKLLKRAADETGLPVVTEVMDVRDVEAAAEY-ADILQVGARNMQNFALLKEVGRQNKPVLLKRGLSATIEEWLNAAEYIL 176 (286)
T ss_pred HHHHHHHHHHcCCeeEEEecCHHHHHHHHhh-hhHHHhcccchhhhHHHHHhcccCCCeEEecCccccHHHHHHHHHHHH
Confidence 3445555555666666677777666666665 788888854443321 132 211 1347788888777664
Q ss_pred h----------------------------------hcCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCC
Q 012478 147 Q----------------------------------AVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKG 192 (462)
Q Consensus 147 r----------------------------------a~~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKr 192 (462)
. -+.+|||+|.-.+.|.-.-+.-+.+..+.+||+|+.||=-..|.
T Consensus 177 s~GN~~vILCERGIRtfe~~TRntLDi~aV~~~kq~THLPVivDpSH~~Grr~lv~pla~AA~AaGAdglmiEVHp~P~- 255 (286)
T COG2876 177 SHGNGNVILCERGIRTFEKATRNTLDISAVPILKQETHLPVIVDPSHATGRRDLVEPLAKAAIAAGADGLMIEVHPDPE- 255 (286)
T ss_pred hCCCCcEEEEecccccccccccceechHHHHHHHhhcCCCEEECCCCcccchhhHHHHHHHHHhccCCeeEEEecCCcc-
Confidence 2 25799999999998876667777788889999999999765443
Q ss_pred CCCCCCCcccCHHHHHHHHHH
Q 012478 193 CGHTRGRKVVSREEAVMRIKA 213 (462)
Q Consensus 193 CGH~~gk~Lvp~ee~~~kI~A 213 (462)
|.-.++++-+++++|.+-++.
T Consensus 256 ~AlsD~~Qql~~~~f~~l~~~ 276 (286)
T COG2876 256 KALSDAKQQLTPEEFEELVKE 276 (286)
T ss_pred cccCcccccCCHHHHHHHHHH
Confidence 445567776666665444433
No 306
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=90.56 E-value=5.1 Score=42.19 Aligned_cols=267 Identities=17% Similarity=0.147 Sum_probs=137.3
Q ss_pred HHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhh-cCCcEEEeCCCCCCCHHHHHHHHHHHHHhCcc
Q 012478 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQA-VSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFA 180 (462)
Q Consensus 102 Arl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra-~~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaa 180 (462)
|+.+.++|++.|=++ +|-.+. +| .+.++.|.+. .+.-+++-... ..+.++...++|+.
T Consensus 32 a~~L~~~GV~~IE~G----------~p~~~~---~~-~e~i~~i~~~~~~~~i~~~~r~-------~~~di~~a~~~g~~ 90 (378)
T PRK11858 32 ARMLDEIGVDQIEAG----------FPAVSE---DE-KEAIKAIAKLGLNASILALNRA-------VKSDIDASIDCGVD 90 (378)
T ss_pred HHHHHHhCCCEEEEe----------CCCcCh---HH-HHHHHHHHhcCCCeEEEEEccc-------CHHHHHHHHhCCcC
Confidence 456778899988765 232211 11 2234444432 22234443221 24446777789999
Q ss_pred EEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEec
Q 012478 181 GIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFID 260 (462)
Q Consensus 181 GI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie 260 (462)
.|+|-..+++- |...+-=.+.++.++++..+++..++.|..+.+.+ .|+. ..+.+..++-+++..++|||.|.+.
T Consensus 91 ~i~i~~~~Sd~---h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~-ed~~-r~~~~~l~~~~~~~~~~Ga~~I~l~ 165 (378)
T PRK11858 91 AVHIFIATSDI---HIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSA-EDAS-RTDLDFLIEFAKAAEEAGADRVRFC 165 (378)
T ss_pred EEEEEEcCCHH---HHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEe-ccCC-CCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 99998765431 22111123578889988888877776554333322 2332 2467888999999999999999874
Q ss_pred ---CCCCHHHHHHHHHhCCC-CceeeeeeecCCCCCCCC---HHHHHhcCCCEEeccchHH--HHHHHHHHHHHHHHHc-
Q 012478 261 ---ALASKEEMKAFCEISPL-VPKMANMLEGGGKTPILN---PLELEELGFKLVAYPLSLI--GVSVRAMQDALTAIKG- 330 (462)
Q Consensus 261 ---~~~s~eei~~i~~~v~~-vP~~~N~l~~~g~tP~ls---~~eL~~lGv~~V~yp~~ll--~aa~~Am~~~l~~l~~- 330 (462)
|.-.++++.++.+.+.. ++.++-+ .... +..+. .-.--+.|+..|--....+ ++...++++.+..|..
T Consensus 166 DT~G~~~P~~v~~lv~~l~~~~~~~l~~-H~Hn-d~GlA~AN~laAv~aGa~~vd~tv~GlGeraGNa~lE~vv~~L~~~ 243 (378)
T PRK11858 166 DTVGILDPFTMYELVKELVEAVDIPIEV-HCHN-DFGMATANALAGIEAGAKQVHTTVNGLGERAGNAALEEVVMALKYL 243 (378)
T ss_pred ccCCCCCHHHHHHHHHHHHHhcCCeEEE-EecC-CcCHHHHHHHHHHHcCCCEEEEeeccccccccCccHHHHHHHHHHH
Confidence 34566777766654321 1222222 1111 11221 1223357877776544443 3344445555555541
Q ss_pred CCCCCCCCCCCHHHHHHhcCcccHHHHHHhhcccccccccccccCCCCCCCCCCcchhhhhcCCCCCCeeEeeCccccc
Q 012478 331 GRIPSPGSMPSFQEIKETLGFNTYYEEEKRYATSMRRLSSENVTSNSYDTQPMAQDDTARRGQSSQDPIVEVITPEVYT 409 (462)
Q Consensus 331 g~~~~~~~~~s~~e~~~lvg~~~~~~~e~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (462)
.+... ...++.+.++ .++.+........++ .+-.|.|.++-+.---.|.-.+.. ...|.+.|+...
T Consensus 244 ~g~~~---~idl~~l~~~---s~~v~~~~~~~~~~~---~pivG~~~F~h~sGiH~~gi~k~~----~~Ye~~~P~~vG 309 (378)
T PRK11858 244 YGIDL---GIDTERLYEL---SRLVSKASGIPVPPN---KAIVGENAFAHESGIHVDGVLKNP----LTYEPFLPEEVG 309 (378)
T ss_pred hCCCC---CcCHHHHHHH---HHHHHHHhCcCCCCC---CccccchhhhhhccccHHHHhCCc----ccccccCHHHcC
Confidence 11111 1233333222 233333222222222 345667777666555555444322 145557776653
No 307
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=90.54 E-value=12 Score=37.41 Aligned_cols=102 Identities=22% Similarity=0.246 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHH
Q 012478 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (462)
Q Consensus 163 ~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeA 242 (462)
++..+.+.+++++++||.-|-|-... ...+...++.+|-.+|+..++++.++. .++.|-. |.... ++
T Consensus 21 ~~~~~~~~a~~~~~~GA~iIDIG~~s------t~p~~~~i~~~~E~~rl~~~v~~~~~~-~~~plsi--DT~~~----~v 87 (257)
T TIGR01496 21 SVDKAVAHAERMLEEGADIIDVGGES------TRPGADRVSPEEELNRVVPVIKALRDQ-PDVPISV--DTYRA----EV 87 (257)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCC------CCCCCCCCCHHHHHHHHHHHHHHHHhc-CCCeEEE--eCCCH----HH
Confidence 56788889999999999999993322 223445667777778888888776642 2454443 33332 33
Q ss_pred HHHHHHhHhcCCcEEEe-cCCCCHHHHHHHHHhCCCCceee
Q 012478 243 LRRSRAFADAGADVLFI-DALASKEEMKAFCEISPLVPKMA 282 (462)
Q Consensus 243 I~RakAy~eAGAD~Ifi-e~~~s~eei~~i~~~v~~vP~~~ 282 (462)
++.|. ++|+|+|-= .+.++ +++..+++... .|..+
T Consensus 88 i~~al---~~G~~iINsis~~~~-~~~~~l~~~~~-~~vV~ 123 (257)
T TIGR01496 88 ARAAL---EAGADIINDVSGGQD-PAMLEVAAEYG-VPLVL 123 (257)
T ss_pred HHHHH---HcCCCEEEECCCCCC-chhHHHHHHcC-CcEEE
Confidence 33333 359998752 23233 45666666653 45443
No 308
>TIGR03247 glucar-dehydr glucarate dehydratase. Glucarate dehydratase converts D-glucarate (and L-idarate, a stereoisomer) to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0716). The E. coli enzyme has been well-characterized.
Probab=90.52 E-value=3.6 Score=44.33 Aligned_cols=98 Identities=20% Similarity=0.286 Sum_probs=68.9
Q ss_pred CHHHHHHHHHHHHH-hCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHH
Q 012478 163 NAMNVKRTVKGYIK-AGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEE 241 (462)
Q Consensus 163 ~~~nv~rtVk~l~~-AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~glde 241 (462)
+++++.+.++++.+ .|...+||. .|+. +.++-+++|++++++. +++.| +.|+-.....++
T Consensus 180 ~~e~~~~~a~~~~~~~Gf~a~KiK-------vG~~------~~~~Di~~v~avRea~----~d~~L--~vDAN~~wt~~~ 240 (441)
T TIGR03247 180 TPEAVVRLAEAAYDRYGFRDFKLK-------GGVL------RGEEEIEAVTALAKRF----PQARI--TLDPNGAWSLDE 240 (441)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEe-------cCCC------ChHHHHHHHHHHHHhC----CCCeE--EEECCCCCCHHH
Confidence 45666666666654 599999993 1321 2356788999998774 34433 668877788999
Q ss_pred HHHHHHHhHhcCCcEEEecCCC---C----HHHHHHHHHhCCCCceeee
Q 012478 242 SLRRSRAFADAGADVLFIDALA---S----KEEMKAFCEISPLVPKMAN 283 (462)
Q Consensus 242 AI~RakAy~eAGAD~Ifie~~~---s----~eei~~i~~~v~~vP~~~N 283 (462)
|++.++++++. ..|+|-+- + .+.++++.+..+ +|+.++
T Consensus 241 Ai~~~~~Le~~---~~~iEePv~~~d~~~~~~~la~Lr~~~~-iPIa~d 285 (441)
T TIGR03247 241 AIALCKDLKGV---LAYAEDPCGAEQGYSGREVMAEFRRATG-LPTATN 285 (441)
T ss_pred HHHHHHHhhhh---hceEeCCCCcccccchHHHHHHHHHhCC-CCEEcC
Confidence 99999999884 45888652 3 567888888775 677643
No 309
>PRK09389 (R)-citramalate synthase; Provisional
Probab=90.48 E-value=5.7 Score=43.46 Aligned_cols=200 Identities=17% Similarity=0.130 Sum_probs=113.7
Q ss_pred HHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhc-CCcEEEeCCCCCCCHHHHHHHHHHHHHhCcc
Q 012478 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV-SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFA 180 (462)
Q Consensus 102 Arl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~-~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaa 180 (462)
|+.+.++||+.|=++..+. + -+| .+.++.|.+.. +.-|.+-... ..+-++...++|+.
T Consensus 30 a~~L~~~Gv~~IE~G~p~~-----~--------~~d-~e~v~~i~~~~~~~~i~a~~r~-------~~~di~~a~~~g~~ 88 (488)
T PRK09389 30 ARKLDELGVDVIEAGSAIT-----S--------EGE-REAIKAVTDEGLNAEICSFARA-------VKVDIDAALECDVD 88 (488)
T ss_pred HHHHHHcCCCEEEEeCCcC-----C--------HHH-HHHHHHHHhcCCCcEEEeeccc-------CHHHHHHHHhCCcC
Confidence 4567789999998875331 1 111 23445555422 2333333222 13446677789999
Q ss_pred EEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEec
Q 012478 181 GIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFID 260 (462)
Q Consensus 181 GI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie 260 (462)
.|+|-..+++. |...+--.+.+|.++++..+++..++.|..+.+.+ .|+ .....+-+++-+++..++|||.|.+.
T Consensus 89 ~v~i~~~~Sd~---h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~-ed~-~r~~~~~l~~~~~~~~~~Ga~~i~l~ 163 (488)
T PRK09389 89 SVHLVVPTSDL---HIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSG-EDA-SRADLDFLKELYKAGIEAGADRICFC 163 (488)
T ss_pred EEEEEEccCHH---HHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEE-eeC-CCCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 99998776543 32222224678888888887776665554444433 233 22357778888999999999999875
Q ss_pred ---CCCCHHHHHHHHHhCCC-CceeeeeeecCCCCCCCC---HHHHHhcCCCEEeccchHH--HHHHHHHHHHHHHHH
Q 012478 261 ---ALASKEEMKAFCEISPL-VPKMANMLEGGGKTPILN---PLELEELGFKLVAYPLSLI--GVSVRAMQDALTAIK 329 (462)
Q Consensus 261 ---~~~s~eei~~i~~~v~~-vP~~~N~l~~~g~tP~ls---~~eL~~lGv~~V~yp~~ll--~aa~~Am~~~l~~l~ 329 (462)
+...++++.++.+.+.. .+.++.+=.. . ...+. ...--+.|+++|-.....+ ++...++++.+..|+
T Consensus 164 DTvG~~~P~~~~~lv~~l~~~~~v~l~~H~H-N-D~GlAvANalaAv~aGa~~Vd~Ti~GiGERaGNa~lE~lv~~L~ 239 (488)
T PRK09389 164 DTVGILTPEKTYELFKRLSELVKGPVSIHCH-N-DFGLAVANTLAALAAGADQVHVTINGIGERAGNASLEEVVMALK 239 (488)
T ss_pred cCCCCcCHHHHHHHHHHHHhhcCCeEEEEec-C-CccHHHHHHHHHHHcCCCEEEEEcccccccccCccHHHHHHHHH
Confidence 34567777777765421 2233332111 1 11221 2333467887775544433 344445555555554
No 310
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=90.48 E-value=5.2 Score=43.66 Aligned_cols=65 Identities=14% Similarity=0.165 Sum_probs=42.7
Q ss_pred HHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhc-CCcEEEeCCCCCCCHHHHHHHHHHHHHhCccE
Q 012478 103 KLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV-SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAG 181 (462)
Q Consensus 103 rl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~-~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaG 181 (462)
..+-++|.++|.+-. .+|+| .-+++.++.|.... ++|||+ |++.. .+.++.++++||++
T Consensus 231 ~~Lv~aGVd~i~~D~------a~g~~-------~~~~~~i~~i~~~~~~~~vi~----g~~~t---~~~~~~l~~~G~d~ 290 (475)
T TIGR01303 231 KALLDAGVDVLVIDT------AHGHQ-------VKMISAIKAVRALDLGVPIVA----GNVVS---AEGVRDLLEAGANI 290 (475)
T ss_pred HHHHHhCCCEEEEeC------CCCCc-------HHHHHHHHHHHHHCCCCeEEE----eccCC---HHHHHHHHHhCCCE
Confidence 334456777776643 24665 44556666776654 799999 45432 55667888999999
Q ss_pred EEeCCC
Q 012478 182 IILEDQ 187 (462)
Q Consensus 182 I~IEDq 187 (462)
|++--+
T Consensus 291 i~vg~g 296 (475)
T TIGR01303 291 IKVGVG 296 (475)
T ss_pred EEECCc
Confidence 998554
No 311
>cd03328 MR_like_3 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 3. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=90.43 E-value=5.4 Score=41.34 Aligned_cols=110 Identities=25% Similarity=0.400 Sum_probs=76.2
Q ss_pred CCcEEEeCCCCCC--CHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEE
Q 012478 150 SIPVIGDGDNGYG--NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVI 227 (462)
Q Consensus 150 ~iPVIaD~DtGyG--~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vI 227 (462)
.+|+-+- .|++ +++...+.++++.+.|..++||- .|. +.++-+++|++++++. |+++.+
T Consensus 125 ~v~~y~s--~~~~~~~~e~~~~~a~~~~~~Gf~~~Kik-------vg~-------~~~~d~~~v~~vRe~~---G~~~~l 185 (352)
T cd03328 125 SVPVYGS--GGFTSYDDDRLREQLSGWVAQGIPRVKMK-------IGR-------DPRRDPDRVAAARRAI---GPDAEL 185 (352)
T ss_pred CeEEEEe--cCCCCCCHHHHHHHHHHHHHCCCCEEEee-------cCC-------CHHHHHHHHHHHHHHc---CCCCeE
Confidence 3666542 2333 45667777888888999999992 231 2356678888887764 566655
Q ss_pred EEecchhhcccHHHHHHHHHHhHhcCCcEEEecCC---CCHHHHHHHHHhCC-CCceee
Q 012478 228 VARTDSRQALSLEESLRRSRAFADAGADVLFIDAL---ASKEEMKAFCEISP-LVPKMA 282 (462)
Q Consensus 228 iARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~~---~s~eei~~i~~~v~-~vP~~~ 282 (462)
+-|+-...++++|++.++++++. +..|+|-+ .+.+.++++.+..| .+|+..
T Consensus 186 --~vDaN~~~~~~~A~~~~~~l~~~--~~~~~EeP~~~~d~~~~~~l~~~~~~~iPIa~ 240 (352)
T cd03328 186 --FVDANGAYSRKQALALARAFADE--GVTWFEEPVSSDDLAGLRLVRERGPAGMDIAA 240 (352)
T ss_pred --EEECCCCCCHHHHHHHHHHHHHh--CcchhhCCCChhhHHHHHHHHhhCCCCCCEEe
Confidence 46887778899999999999986 55688865 35678888888732 256553
No 312
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=90.41 E-value=1.8 Score=45.77 Aligned_cols=91 Identities=16% Similarity=0.129 Sum_probs=59.5
Q ss_pred HHHHHHhC-CCceEecccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhc--CCcEEEe
Q 012478 80 SLRQILEL-PGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV--SIPVIGD 156 (462)
Q Consensus 80 ~LR~ll~~-~~~iv~p~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~--~iPVIaD 156 (462)
.++.+.+. +.++++=|+-+.-.|+.+.++|+++|.+|+.+- . .-|.+..+++.+.+ |++++ .+|||+|
T Consensus 219 ~i~~l~~~~~~PvivKGv~~~eda~~a~~~Gvd~I~VS~HGG---r--q~~~~~a~~~~L~e----i~~av~~~i~vi~d 289 (367)
T TIGR02708 219 DIEEIAGYSGLPVYVKGPQCPEDADRALKAGASGIWVTNHGG---R--QLDGGPAAFDSLQE----VAEAVDKRVPIVFD 289 (367)
T ss_pred HHHHHHHhcCCCEEEeCCCCHHHHHHHHHcCcCEEEECCcCc---c--CCCCCCcHHHHHHH----HHHHhCCCCcEEee
Confidence 34444332 458888899999999999999999999996552 1 12444445554433 33334 4999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCccEEEeC
Q 012478 157 GDNGYGNAMNVKRTVKGYIKAGFAGIILE 185 (462)
Q Consensus 157 ~DtGyG~~~nv~rtVk~l~~AGaaGI~IE 185 (462)
.+- .+-...+|.+. .||.+|.|-
T Consensus 290 GGI-----r~g~Dv~KaLa-lGAd~V~ig 312 (367)
T TIGR02708 290 SGV-----RRGQHVFKALA-SGADLVALG 312 (367)
T ss_pred CCc-----CCHHHHHHHHH-cCCCEEEEc
Confidence 433 22333345554 899999983
No 313
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=90.33 E-value=12 Score=38.94 Aligned_cols=145 Identities=17% Similarity=0.197 Sum_probs=79.3
Q ss_pred HHHHHHhCCcEEEec---cHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhc-CCcEEEeCCCCCCCHHHHHHHHHHHHHh
Q 012478 102 AKLVEKSGFSFCFTS---GFSISAARLALPDTGFISYGEMVDQGQLITQAV-SIPVIGDGDNGYGNAMNVKRTVKGYIKA 177 (462)
Q Consensus 102 Arl~e~aGfdaI~vS---G~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~-~iPVIaD~DtGyG~~~nv~rtVk~l~~A 177 (462)
++.++++|++.|=++ |++-+....|.|-.. ++ |.+. .+.... +..+.+=+.-|.++.. -++...++
T Consensus 30 a~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~--~~-e~i~---~~~~~~~~~~~~~ll~pg~~~~~----dl~~a~~~ 99 (333)
T TIGR03217 30 AAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHT--DL-EYIE---AAADVVKRAKVAVLLLPGIGTVH----DLKAAYDA 99 (333)
T ss_pred HHHHHHcCCCEEEEecCCCCCCccccCCCCCCC--hH-HHHH---HHHHhCCCCEEEEEeccCccCHH----HHHHHHHC
Confidence 456778999999886 322111223544322 22 3222 222222 2334333344666643 35677789
Q ss_pred CccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEE
Q 012478 178 GFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVL 257 (462)
Q Consensus 178 GaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~I 257 (462)
|+..|.|-.. |.. .+...+-|+.+ ++.|.+..++. .++. ....++.++.++...++|||+|
T Consensus 100 gvd~iri~~~-----~~e--------~d~~~~~i~~a----k~~G~~v~~~l-~~s~-~~~~e~l~~~a~~~~~~Ga~~i 160 (333)
T TIGR03217 100 GARTVRVATH-----CTE--------ADVSEQHIGMA----RELGMDTVGFL-MMSH-MTPPEKLAEQAKLMESYGADCV 160 (333)
T ss_pred CCCEEEEEec-----cch--------HHHHHHHHHHH----HHcCCeEEEEE-Eccc-CCCHHHHHHHHHHHHhcCCCEE
Confidence 9999998553 211 12222222222 33343333222 2332 2456888999999999999999
Q ss_pred Eec---CCCCHHHHHHHHHhC
Q 012478 258 FID---ALASKEEMKAFCEIS 275 (462)
Q Consensus 258 fie---~~~s~eei~~i~~~v 275 (462)
++- |.-.++++.++.+.+
T Consensus 161 ~i~DT~G~~~P~~v~~~v~~l 181 (333)
T TIGR03217 161 YIVDSAGAMLPDDVRDRVRAL 181 (333)
T ss_pred EEccCCCCCCHHHHHHHHHHH
Confidence 884 345667777666543
No 314
>cd03326 MR_like_1 Mandelate racemase (MR)-like subfamily of the enolase superfamily, subgroup 1. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. This subgroup's function is unknown.
Probab=90.29 E-value=4.8 Score=42.50 Aligned_cols=98 Identities=17% Similarity=0.305 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHH
Q 012478 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (462)
Q Consensus 163 ~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeA 242 (462)
++....+.++++.+.|..++||-- |. -+.++-+++|++++++. |+++.+ +.|+-....+++|
T Consensus 160 ~~~~~~~~a~~~~~~Gf~~~Kikv-------g~------~~~~~di~~v~avRe~~---G~~~~l--~vDaN~~w~~~~A 221 (385)
T cd03326 160 DLGRLRDEMRRYLDRGYTVVKIKI-------GG------APLDEDLRRIEAALDVL---GDGARL--AVDANGRFDLETA 221 (385)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeC-------CC------CCHHHHHHHHHHHHHhc---CCCCeE--EEECCCCCCHHHH
Confidence 456677778888889999999931 21 12355678888887663 566655 5687777889999
Q ss_pred HHHHHHhHhcCCcEEEecCC---CCHHHHHHHHHhCCCCcee
Q 012478 243 LRRSRAFADAGADVLFIDAL---ASKEEMKAFCEISPLVPKM 281 (462)
Q Consensus 243 I~RakAy~eAGAD~Ifie~~---~s~eei~~i~~~v~~vP~~ 281 (462)
++.++++.+.+ .-|+|-+ .+.+.++++.+..+ +|+.
T Consensus 222 ~~~~~~l~~~~--~~~iEeP~~~~d~~~~~~L~~~~~-iPIa 260 (385)
T cd03326 222 IAYAKALAPYG--LRWYEEPGDPLDYALQAELADHYD-GPIA 260 (385)
T ss_pred HHHHHHhhCcC--CCEEECCCCccCHHHHHHHHhhCC-CCEE
Confidence 99999998864 5578754 36678888888775 6754
No 315
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=90.27 E-value=0.93 Score=43.32 Aligned_cols=100 Identities=13% Similarity=0.159 Sum_probs=62.5
Q ss_pred CeEEEEecchhhc-----ccHHHHHHHHHHhHhcCCcEEEecCC-----CCHHHHHHHHHhCCCCceeeeeeecCCCCCC
Q 012478 224 DIVIVARTDSRQA-----LSLEESLRRSRAFADAGADVLFIDAL-----ASKEEMKAFCEISPLVPKMANMLEGGGKTPI 293 (462)
Q Consensus 224 d~vIiARTDA~~~-----~gldeAI~RakAy~eAGAD~Ifie~~-----~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ 293 (462)
.+-|||--+-... ...++.++.|++|+++||++|.+... .+.+.++.+.+.+. +|+.+ .+ +-.+.
T Consensus 10 ~~~vIae~k~~sp~~~~~~~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v~-iPi~~---~~-~i~~~ 84 (217)
T cd00331 10 GLGVIAEVKRASPSKGLIREDFDPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAVS-LPVLR---KD-FIIDP 84 (217)
T ss_pred CceEEEEecCCCCCCCcCCCCCCHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhcC-CCEEE---CC-eecCH
Confidence 4666665443221 12345788999999999999987521 35577787777653 66552 12 22222
Q ss_pred CCHHHHHhcCCCEEeccchHHHHHHHHHHHHHHHHHc
Q 012478 294 LNPLELEELGFKLVAYPLSLIGVSVRAMQDALTAIKG 330 (462)
Q Consensus 294 ls~~eL~~lGv~~V~yp~~ll~aa~~Am~~~l~~l~~ 330 (462)
...+++.++|+..|..+...+.. ..+++.++..+.
T Consensus 85 ~~v~~~~~~Gad~v~l~~~~~~~--~~~~~~~~~~~~ 119 (217)
T cd00331 85 YQIYEARAAGADAVLLIVAALDD--EQLKELYELARE 119 (217)
T ss_pred HHHHHHHHcCCCEEEEeeccCCH--HHHHHHHHHHHH
Confidence 35788999999999987765542 344555554443
No 316
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=90.26 E-value=12 Score=38.91 Aligned_cols=132 Identities=15% Similarity=0.072 Sum_probs=83.1
Q ss_pred ecccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCC-CCHHHHHHHH
Q 012478 93 GPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGY-GNAMNVKRTV 171 (462)
Q Consensus 93 ~p~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGy-G~~~nv~rtV 171 (462)
.|+-.+.-..+.+.++|++.+-+.-.. . + .+...++++.+ +..+.-+.+-....+ -++..+.+.+
T Consensus 85 ~pg~~~~~dl~~a~~~gvd~iri~~~~------~--e-----~~~~~~~i~~a-k~~G~~v~~~l~~a~~~~~e~l~~~a 150 (337)
T PRK08195 85 LPGIGTVDDLKMAYDAGVRVVRVATHC------T--E-----ADVSEQHIGLA-RELGMDTVGFLMMSHMAPPEKLAEQA 150 (337)
T ss_pred ccCcccHHHHHHHHHcCCCEEEEEEec------c--h-----HHHHHHHHHHH-HHCCCeEEEEEEeccCCCHHHHHHHH
Confidence 466667666777888899987765211 0 1 12334444443 333444554444433 3678899999
Q ss_pred HHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHh
Q 012478 172 KGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFAD 251 (462)
Q Consensus 172 k~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~e 251 (462)
+.+.++|+..|.|-|.. |. ..++++.+.++++++.- +++.-|--.+= ..+.-++.-+.+..+
T Consensus 151 ~~~~~~Ga~~i~i~DT~-----G~------~~P~~v~~~v~~l~~~l---~~~i~ig~H~H----nnlGla~ANslaAi~ 212 (337)
T PRK08195 151 KLMESYGAQCVYVVDSA-----GA------LLPEDVRDRVRALRAAL---KPDTQVGFHGH----NNLGLGVANSLAAVE 212 (337)
T ss_pred HHHHhCCCCEEEeCCCC-----CC------CCHHHHHHHHHHHHHhc---CCCCeEEEEeC----CCcchHHHHHHHHHH
Confidence 99999999999999985 43 34567888888887653 23433332221 123345777888889
Q ss_pred cCCcE
Q 012478 252 AGADV 256 (462)
Q Consensus 252 AGAD~ 256 (462)
|||+.
T Consensus 213 aGa~~ 217 (337)
T PRK08195 213 AGATR 217 (337)
T ss_pred hCCCE
Confidence 99994
No 317
>PRK15452 putative protease; Provisional
Probab=90.25 E-value=7.1 Score=42.31 Aligned_cols=140 Identities=11% Similarity=0.118 Sum_probs=77.6
Q ss_pred HHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHH
Q 012478 169 RTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRA 248 (462)
Q Consensus 169 rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakA 248 (462)
+.++..+++||++|-+....+--|.. ....+.+++.+-++-| ++.|..+.+..-+=.. ...+++..+-.+.
T Consensus 14 e~l~aAi~~GADaVY~G~~~~~~R~~----~~~f~~edl~eav~~a----h~~g~kvyvt~n~i~~-e~el~~~~~~l~~ 84 (443)
T PRK15452 14 KNMRYAFAYGADAVYAGQPRYSLRVR----NNEFNHENLALGINEA----HALGKKFYVVVNIAPH-NAKLKTFIRDLEP 84 (443)
T ss_pred HHHHHHHHCCCCEEEECCCccchhhh----ccCCCHHHHHHHHHHH----HHcCCEEEEEecCcCC-HHHHHHHHHHHHH
Confidence 34456778999999997665422221 1233455544433333 3334444443222111 2246666777777
Q ss_pred hHhcCCcEEEecCCCCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcCCCEEeccchHHHHHHHHHH
Q 012478 249 FADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVSVRAMQ 322 (462)
Q Consensus 249 y~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~ll~aa~~Am~ 322 (462)
..++|+|+|.+-. ...+..+.+..|.+|+.+..-. ..+...+.+-|.++|+++|..+.-+-..-++.|.
T Consensus 85 l~~~gvDgvIV~d---~G~l~~~ke~~p~l~ih~stql--ni~N~~a~~f~~~lG~~rvvLSrELsl~EI~~i~ 153 (443)
T PRK15452 85 VIAMKPDALIMSD---PGLIMMVREHFPEMPIHLSVQA--NAVNWATVKFWQQMGLTRVILSRELSLEEIEEIR 153 (443)
T ss_pred HHhCCCCEEEEcC---HHHHHHHHHhCCCCeEEEEecc--cCCCHHHHHHHHHCCCcEEEECCcCCHHHHHHHH
Confidence 7899999999744 4566666665555554332111 1122345666777888877777766554444443
No 318
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=90.20 E-value=11 Score=39.10 Aligned_cols=159 Identities=14% Similarity=0.073 Sum_probs=87.1
Q ss_pred HHHHHHHhCCcEEEec-cHHHHhhh-ccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCC---HHHHHHHHHHHH
Q 012478 101 SAKLVEKSGFSFCFTS-GFSISAAR-LALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGN---AMNVKRTVKGYI 175 (462)
Q Consensus 101 SArl~e~aGfdaI~vS-G~avSas~-lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~---~~nv~rtVk~l~ 175 (462)
.|+++++.|||.|=+= |.-..... -|+=-.-+-..+.+.+.++.+.+++++||.+=+--|+-+ ..+..+.++.++
T Consensus 72 aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~g~~~~~~~~~~~~~~~~l~ 151 (318)
T TIGR00742 72 CAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRIGIDPLDSYEFLCDFVEIVS 151 (318)
T ss_pred HHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEecCCCCcchHHHHHHHHHHHH
Confidence 3566777888877654 32211100 011011112345566667777778899999999988753 256778899999
Q ss_pred HhCccEEEeCCCCCCCCCCCCCCCc--ccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcC
Q 012478 176 KAGFAGIILEDQVSPKGCGHTRGRK--VVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAG 253 (462)
Q Consensus 176 ~AGaaGI~IEDq~~PKrCGH~~gk~--Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAG 253 (462)
++|++.|.|...+. ..-|..+ +. -++.-. -+.|++++++. +++-|++--|-.. .+++.+ +.+ |
T Consensus 152 ~~G~~~itvHgRt~-~~qg~sg-~~~~~~~~~~-~~~i~~vk~~~----~~ipVi~NGdI~s---~~da~~----~l~-g 216 (318)
T TIGR00742 152 GKGCQNFIVHARKA-WLSGLSP-KENREIPPLR-YERVYQLKKDF----PHLTIEINGGIKN---SEQIKQ----HLS-H 216 (318)
T ss_pred HcCCCEEEEeCCch-hhcCCCc-cccccCCchh-HHHHHHHHHhC----CCCcEEEECCcCC---HHHHHH----HHh-C
Confidence 99999999977641 0112221 11 111111 12333333322 2466666666543 233332 333 9
Q ss_pred CcEEEec--CCCCHHHHHHHHHh
Q 012478 254 ADVLFID--ALASKEEMKAFCEI 274 (462)
Q Consensus 254 AD~Ifie--~~~s~eei~~i~~~ 274 (462)
||+|++- .+.++-.+.++.+.
T Consensus 217 ~dgVMigRgal~nP~if~~~~~~ 239 (318)
T TIGR00742 217 VDGVMVGREAYENPYLLANVDRE 239 (318)
T ss_pred CCEEEECHHHHhCCHHHHHHHHH
Confidence 9999983 34455555555443
No 319
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=90.10 E-value=8.7 Score=38.56 Aligned_cols=148 Identities=16% Similarity=0.123 Sum_probs=88.7
Q ss_pred HHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEE
Q 012478 103 KLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGI 182 (462)
Q Consensus 103 rl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI 182 (462)
+.+.++|++.|=+++ |.. -.++.+.++.+++....+-+ .++.. .-.+-++...++|+..|
T Consensus 29 ~~L~~~Gv~~IEvG~----------P~~----~~~~~~~~~~l~~~~~~~~v----~~~~r--~~~~di~~a~~~g~~~i 88 (262)
T cd07948 29 KALDAFGVDYIELTS----------PAA----SPQSRADCEAIAKLGLKAKI----LTHIR--CHMDDARIAVETGVDGV 88 (262)
T ss_pred HHHHHcCCCEEEEEC----------CCC----CHHHHHHHHHHHhCCCCCcE----EEEec--CCHHHHHHHHHcCcCEE
Confidence 456688999988774 221 24566666666543211111 11111 11234566778999999
Q ss_pred EeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEec--
Q 012478 183 ILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFID-- 260 (462)
Q Consensus 183 ~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie-- 260 (462)
+|--.+.+ .|...+.--+.+|.++++..+++..++.|..+.+.. .|+.. ...+..++-++++.++|||.|.+.
T Consensus 89 ~i~~~~S~---~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~-eda~r-~~~~~l~~~~~~~~~~g~~~i~l~Dt 163 (262)
T cd07948 89 DLVFGTSP---FLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSS-EDSFR-SDLVDLLRVYRAVDKLGVNRVGIADT 163 (262)
T ss_pred EEEEecCH---HHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEE-EeeCC-CCHHHHHHHHHHHHHcCCCEEEECCc
Confidence 99765432 122222224568888888888777766553333333 23432 245677777888889999999874
Q ss_pred -CCCCHHHHHHHHHhC
Q 012478 261 -ALASKEEMKAFCEIS 275 (462)
Q Consensus 261 -~~~s~eei~~i~~~v 275 (462)
|.-+++++.++.+.+
T Consensus 164 ~G~~~P~~v~~~~~~~ 179 (262)
T cd07948 164 VGIATPRQVYELVRTL 179 (262)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 456778887777653
No 320
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=90.08 E-value=2.5 Score=40.53 Aligned_cols=95 Identities=20% Similarity=0.240 Sum_probs=58.7
Q ss_pred HHHHHhCCCceEecccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCC
Q 012478 81 LRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNG 160 (462)
Q Consensus 81 LR~ll~~~~~iv~p~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtG 160 (462)
+.+.+.+.+..+++.+++.--++.+++.|.+.+++.+... -|........ ..+..+++.+..++||++.. |
T Consensus 94 ~~~~~~~~~i~~i~~v~~~~~~~~~~~~gad~i~~~~~~~----~G~~~~~~~~---~~~~i~~i~~~~~~Pvi~~G--G 164 (236)
T cd04730 94 VVERLKAAGIKVIPTVTSVEEARKAEAAGADALVAQGAEA----GGHRGTFDIG---TFALVPEVRDAVDIPVIAAG--G 164 (236)
T ss_pred HHHHHHHcCCEEEEeCCCHHHHHHHHHcCCCEEEEeCcCC----CCCCCccccC---HHHHHHHHHHHhCCCEEEEC--C
Confidence 3333433445667788888888888889999998765421 1222111112 24455566666789999863 4
Q ss_pred CCCHHHHHHHHHHHHHhCccEEEeCCCC
Q 012478 161 YGNAMNVKRTVKGYIKAGFAGIILEDQV 188 (462)
Q Consensus 161 yG~~~nv~rtVk~l~~AGaaGI~IEDq~ 188 (462)
...+.++ +++.++|++||.+--..
T Consensus 165 I~~~~~v----~~~l~~GadgV~vgS~l 188 (236)
T cd04730 165 IADGRGI----AAALALGADGVQMGTRF 188 (236)
T ss_pred CCCHHHH----HHHHHcCCcEEEEchhh
Confidence 4444444 45556899999995443
No 321
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=90.06 E-value=1.2 Score=48.71 Aligned_cols=88 Identities=15% Similarity=0.158 Sum_probs=51.9
Q ss_pred eEecccCChHHHHHHHHhCCcEEEec-cHHHHhhhccCCCCCCCCHHHHHHHHH---HHHhhcC--CcEEEeCCCCCCCH
Q 012478 91 HQGPACFDALSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQ---LITQAVS--IPVIGDGDNGYGNA 164 (462)
Q Consensus 91 iv~p~ayDalSArl~e~aGfdaI~vS-G~avSas~lG~PD~g~vsl~Eml~~~~---~I~ra~~--iPVIaD~DtGyG~~ 164 (462)
+.+=|+.++-.|+.+-++|+|+|.+| |.+-.++.--..+.+.-.++-+.+.++ ...+..+ +|||+|.---|+
T Consensus 287 V~aGnV~t~e~a~~li~aGAd~I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~-- 364 (502)
T PRK07107 287 VGAGNVVDREGFRYLAEAGADFVKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPICSDGGIVYD-- 364 (502)
T ss_pred EEeccccCHHHHHHHHHcCCCEEEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCch--
Confidence 44557999999999999999999998 333212211223333223333333332 2333345 999999544333
Q ss_pred HHHHHHHHHHHHhCccEEEe
Q 012478 165 MNVKRTVKGYIKAGFAGIIL 184 (462)
Q Consensus 165 ~nv~rtVk~l~~AGaaGI~I 184 (462)
.++ +|.+ .+||++|.|
T Consensus 365 gdi---~KAl-a~GA~~vm~ 380 (502)
T PRK07107 365 YHM---TLAL-AMGADFIML 380 (502)
T ss_pred hHH---HHHH-HcCCCeeee
Confidence 233 3444 489999998
No 322
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=90.06 E-value=1.5 Score=45.08 Aligned_cols=64 Identities=17% Similarity=0.230 Sum_probs=45.9
Q ss_pred HHHHHHhHhcCCcEEEecCCCCHHHHHHHHHhCCCCceeeeeeec-CCCCCCCCHHHHHhcCCCEEeccch
Q 012478 243 LRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEG-GGKTPILNPLELEELGFKLVAYPLS 312 (462)
Q Consensus 243 I~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~l~~-~g~tP~ls~~eL~~lGv~~V~yp~~ 312 (462)
++.++.+.++|||.|+++-.. ++++++.++.++. .. .++. ||-+ .-+..++.+.|+..++.+..
T Consensus 215 leea~eA~~aGaDiImLDnms-pe~l~~av~~~~~-~~---~lEaSGGIt-~~ni~~yA~tGVD~IS~gal 279 (294)
T PRK06978 215 LAQLETALAHGAQSVLLDNFT-LDMMREAVRVTAG-RA---VLEVSGGVN-FDTVRAFAETGVDRISIGAL 279 (294)
T ss_pred HHHHHHHHHcCCCEEEECCCC-HHHHHHHHHhhcC-Ce---EEEEECCCC-HHHHHHHHhcCCCEEEeCcc
Confidence 445666789999999999874 5899988887653 11 2332 3433 24678999999999998763
No 323
>PLN02334 ribulose-phosphate 3-epimerase
Probab=90.02 E-value=4.3 Score=39.42 Aligned_cols=67 Identities=15% Similarity=0.261 Sum_probs=39.5
Q ss_pred HHHHhHhcC-CcEEEecCC------C-----CHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcCCCEEeccch
Q 012478 245 RSRAFADAG-ADVLFIDAL------A-----SKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLS 312 (462)
Q Consensus 245 RakAy~eAG-AD~Ifie~~------~-----s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~ 312 (462)
..+++.+.| +|.|.+-.+ + ..+.++++.+..+..|+ ...||-++ -+..++.+.|+..++.+..
T Consensus 130 ~~~~~~~~~~~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~~~~~I----~a~GGI~~-e~i~~l~~aGad~vvvgsa 204 (229)
T PLN02334 130 AVEPVVEKGLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKYPELDI----EVDGGVGP-STIDKAAEAGANVIVAGSA 204 (229)
T ss_pred HHHHHHhccCCCEEEEEEEecCCCccccCHHHHHHHHHHHHhCCCCcE----EEeCCCCH-HHHHHHHHcCCCEEEEChH
Confidence 455666664 998743111 1 12345555555443332 22235443 3678899999999999988
Q ss_pred HHHH
Q 012478 313 LIGV 316 (462)
Q Consensus 313 ll~a 316 (462)
++.+
T Consensus 205 i~~~ 208 (229)
T PLN02334 205 VFGA 208 (229)
T ss_pred HhCC
Confidence 7753
No 324
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=89.97 E-value=2 Score=43.70 Aligned_cols=77 Identities=22% Similarity=0.263 Sum_probs=51.6
Q ss_pred CeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEecCCCCHHHHHHHHHhCCC-CceeeeeeecCCCCCCCCHHHHHhc
Q 012478 224 DIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPL-VPKMANMLEGGGKTPILNPLELEEL 302 (462)
Q Consensus 224 d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~-vP~~~N~l~~~g~tP~ls~~eL~~l 302 (462)
...|..-.|. ++.++.+.++|||.|.++.+ +.+++++.++.... .|... +...||-+| -+..++.+.
T Consensus 182 ~~~I~VEv~t---------leea~~A~~~GaDiI~LDn~-~~e~l~~~v~~~~~~~~~~~-ieAsGgIt~-~ni~~ya~~ 249 (273)
T PRK05848 182 TAKIEIECES---------LEEAKNAMNAGADIVMCDNM-SVEEIKEVVAYRNANYPHVL-LEASGNITL-ENINAYAKS 249 (273)
T ss_pred CceEEEEeCC---------HHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHhhccCCCeE-EEEECCCCH-HHHHHHHHc
Confidence 3566665443 44566778899999999886 66899988885431 23222 222234433 367899999
Q ss_pred CCCEEeccch
Q 012478 303 GFKLVAYPLS 312 (462)
Q Consensus 303 Gv~~V~yp~~ 312 (462)
|+..++.+..
T Consensus 250 GvD~IsvG~l 259 (273)
T PRK05848 250 GVDAISSGSL 259 (273)
T ss_pred CCCEEEeChh
Confidence 9999999764
No 325
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=89.92 E-value=9 Score=40.19 Aligned_cols=149 Identities=13% Similarity=0.102 Sum_probs=81.4
Q ss_pred HHHHHHHHhCCcEEEec---cHHHHhhhcc----CCCC-CCCCHHHH----HHHHHHHHhhcC-CcEEEe---------C
Q 012478 100 LSAKLVEKSGFSFCFTS---GFSISAARLA----LPDT-GFISYGEM----VDQGQLITQAVS-IPVIGD---------G 157 (462)
Q Consensus 100 lSArl~e~aGfdaI~vS---G~avSas~lG----~PD~-g~vsl~Em----l~~~~~I~ra~~-iPVIaD---------~ 157 (462)
..|+.+.++|||.|-+- |+-++-..-. --|- | =|++.- ++.++.|.++++ -+|.+= .
T Consensus 163 ~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYG-GslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~~ 241 (362)
T PRK10605 163 QAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYG-GSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFNNV 241 (362)
T ss_pred HHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCC-CcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCccccccC
Confidence 57899999999999887 4444321101 1221 1 245532 333444444443 134331 2
Q ss_pred CCCCCCHHH-HHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhc
Q 012478 158 DNGYGNAMN-VKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQA 236 (462)
Q Consensus 158 DtGyG~~~n-v~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~ 236 (462)
+.|+ +.+. ..+.++.++++|++-|++-.. +..+..-.+ .++.++|+.++ +..+++.++.+.
T Consensus 242 ~~G~-~~~e~~~~~~~~L~~~giD~i~vs~~-------~~~~~~~~~-~~~~~~ik~~~------~~pv~~~G~~~~--- 303 (362)
T PRK10605 242 DNGP-NEEADALYLIEQLGKRGIAYLHMSEP-------DWAGGEPYS-DAFREKVRARF------HGVIIGAGAYTA--- 303 (362)
T ss_pred CCCC-CHHHHHHHHHHHHHHcCCCEEEeccc-------cccCCcccc-HHHHHHHHHHC------CCCEEEeCCCCH---
Confidence 3333 3345 688899999999999999543 211112222 34555555443 224555555421
Q ss_pred ccHHHHHHHHHHhHhcC-CcEEEec--CCCCHHHHHHHHHh
Q 012478 237 LSLEESLRRSRAFADAG-ADVLFID--ALASKEEMKAFCEI 274 (462)
Q Consensus 237 ~gldeAI~RakAy~eAG-AD~Ifie--~~~s~eei~~i~~~ 274 (462)
+.+....+.| ||+|.+- .+.+++..+++.+.
T Consensus 304 -------~~ae~~i~~G~~D~V~~gR~~iadPd~~~k~~~g 337 (362)
T PRK10605 304 -------EKAETLIGKGLIDAVAFGRDYIANPDLVARLQRK 337 (362)
T ss_pred -------HHHHHHHHcCCCCEEEECHHhhhCccHHHHHhcC
Confidence 2344455555 9999883 45677777777664
No 326
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=89.90 E-value=1.5 Score=44.66 Aligned_cols=66 Identities=18% Similarity=0.280 Sum_probs=45.8
Q ss_pred HHHHHHhHhcCCcEEEecCCCCHHHHHHHHHhCCC-CceeeeeeecCCCCCCCCHHHHHhcCCCEEeccc
Q 012478 243 LRRSRAFADAGADVLFIDALASKEEMKAFCEISPL-VPKMANMLEGGGKTPILNPLELEELGFKLVAYPL 311 (462)
Q Consensus 243 I~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~-vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~ 311 (462)
+++++.+.++|||.|+++.. +.+++++.++.+.. -|... +-..||-++ -+..++.+.|+..++.+.
T Consensus 198 leea~ea~~~GaDiI~lDn~-~~e~l~~~v~~l~~~~~~~~-leasGGI~~-~ni~~ya~~GvD~is~ga 264 (277)
T TIGR01334 198 IEQALTVLQASPDILQLDKF-TPQQLHHLHERLKFFDHIPT-LAAAGGINP-ENIADYIEAGIDLFITSA 264 (277)
T ss_pred HHHHHHHHHcCcCEEEECCC-CHHHHHHHHHHHhccCCCEE-EEEECCCCH-HHHHHHHhcCCCEEEeCc
Confidence 55778888999999999986 45788888876631 12221 122234333 367889999999998865
No 327
>PRK15052 D-tagatose-1,6-bisphosphate aldolase subunit GatZ; Provisional
Probab=89.88 E-value=33 Score=37.22 Aligned_cols=207 Identities=17% Similarity=0.194 Sum_probs=126.8
Q ss_pred HHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCc---EEEeCCCC----CC--CHH----HHHHH
Q 012478 104 LVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIP---VIGDGDNG----YG--NAM----NVKRT 170 (462)
Q Consensus 104 l~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iP---VIaD~DtG----yG--~~~----nv~rt 170 (462)
.+.+.|+..++.++.--....=|| +| ++-.++.+.+..|++..+.| +|.=.|++ |- ... ++.+.
T Consensus 33 ~a~~~~~pvLiEAT~NQVdq~GGY--TG-mtP~dF~~~V~~iA~~~gf~~~~iiLggDHlGPn~Wq~~pa~eAM~~A~~l 109 (421)
T PRK15052 33 FDLNSTRKVLIEATSNQVNQFGGY--TG-MTPADFREFVYGIADKVGFPRERIILGGDHLGPNCWQQEPADAAMEKSVEL 109 (421)
T ss_pred HHhhcCCcEEEEeccccccccCCc--CC-CCHHHHHHHHHHHHHHcCCChhcEEeecCCCCCccccCCCHHHHHHHHHHH
Confidence 334458888887743333322367 44 78889999999999988766 68999996 21 122 35566
Q ss_pred HHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHH----HHHHhhC-CCe-EEEEecch-----------
Q 012478 171 VKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAV----DARKESG-SDI-VIVARTDS----------- 233 (462)
Q Consensus 171 Vk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~----~Ar~~~g-~d~-vIiARTDA----------- 233 (462)
++.+++||..=|||.-.. .|-- .+ ..+|.+..++|-.... +++++.| ++. .|| =|+.
T Consensus 110 i~ayV~AGF~kIHLD~Sm---~ca~-d~-~~L~d~~vA~Raa~L~~~aE~~~~~~~~~~~vYvI-GTEvP~pGGa~~~~~ 183 (421)
T PRK15052 110 VKAYVRAGFSKIHLDASM---SCAD-DP-IPLAPETVAERAAVLCQAAESVATDCQREQLSYVI-GTEVPVPGGEASAIQ 183 (421)
T ss_pred HHHHHHcCCceEEecCCC---CccC-CC-ccCCHHHHHHHHHHHHHHHHHHHHhcCCCCceEEe-ccccCCCCcchhhcc
Confidence 778889999999994432 3532 12 4567777666644222 2333223 233 334 2332
Q ss_pred -hh---cccHHHHHHHH-HHhHhcCCcE-----EE--e-cCC---------CCHHHHHHHHHhCCCCceeeeeeecCCCC
Q 012478 234 -RQ---ALSLEESLRRS-RAFADAGADV-----LF--I-DAL---------ASKEEMKAFCEISPLVPKMANMLEGGGKT 291 (462)
Q Consensus 234 -~~---~~gldeAI~Ra-kAy~eAGAD~-----If--i-e~~---------~s~eei~~i~~~v~~vP~~~N~l~~~g~t 291 (462)
.. .+.++..|+.- ++|.++|-+. |+ + +|+ -+.+..+.+.+.+.. |.+ +.+. -.|
T Consensus 184 ~~~vT~~e~~~~ti~~h~~af~~~GL~~aw~rvi~vVVQpGvef~~~~V~~y~~~~A~~Ls~~~~~-~~l--vfEa-HST 259 (421)
T PRK15052 184 SVHVTRVEDAANTLRTHQKAFIARGLTEALTRVIAIVVQPGVEFDHSNIIHYQPQEAQALSAWIEN-TPM--VYEA-HST 259 (421)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHcCchhhhccceEEEEeCCeeeCCCCeeecCHHHHHHHHHHhcC-CCE--EEee-cCc
Confidence 11 23466788887 8899999553 22 2 444 135667777766554 332 3454 446
Q ss_pred CCCCHHH---HHhcCCCEEeccchHHHHHHHHHHH
Q 012478 292 PILNPLE---LEELGFKLVAYPLSLIGVSVRAMQD 323 (462)
Q Consensus 292 P~ls~~e---L~~lGv~~V~yp~~ll~aa~~Am~~ 323 (462)
.+.+... |-+.||...-.|+.+-++...|+-.
T Consensus 260 DYQt~~al~~lv~dgfaiLKVGPalTfalreAlfa 294 (421)
T PRK15052 260 DYQTRQAYRELVRDHFAILKVGPALTFALREAIFA 294 (421)
T ss_pred ccCCHHHHHHHHhcCceeeeechhHhHHHHHHHHH
Confidence 6676654 5567999999999887776666543
No 328
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=89.86 E-value=1.5 Score=45.57 Aligned_cols=85 Identities=14% Similarity=0.120 Sum_probs=53.2
Q ss_pred CCceEec-ccCChHHHHHHHHhCCcEEEeccHHHHh--h----hccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCC
Q 012478 88 PGVHQGP-ACFDALSAKLVEKSGFSFCFTSGFSISA--A----RLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNG 160 (462)
Q Consensus 88 ~~~iv~p-~ayDalSArl~e~aGfdaI~vSG~avSa--s----~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtG 160 (462)
++.+++. ++-+.-.|+.+.++|+|++.++..+-+. + ..|.||- .+..++.+++..++|||+|. |
T Consensus 139 p~~~vi~g~V~t~e~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w-------~l~ai~~~~~~~~ipVIAdG--G 209 (326)
T PRK05458 139 PETFVIAGNVGTPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGW-------QLAALRWCAKAARKPIIADG--G 209 (326)
T ss_pred CCCeEEEEecCCHHHHHHHHHcCcCEEEECCCCCcccccccccCCCCCcc-------HHHHHHHHHHHcCCCEEEeC--C
Confidence 3355555 5889999999999999999988222111 0 1233432 22334455555679999883 3
Q ss_pred CCCHHHHHHHHHHHHHhCccEEEeC
Q 012478 161 YGNAMNVKRTVKGYIKAGFAGIILE 185 (462)
Q Consensus 161 yG~~~nv~rtVk~l~~AGaaGI~IE 185 (462)
.-++.++. |. ..+||++|.+-
T Consensus 210 I~~~~Di~---Ka-La~GA~aV~vG 230 (326)
T PRK05458 210 IRTHGDIA---KS-IRFGATMVMIG 230 (326)
T ss_pred CCCHHHHH---HH-HHhCCCEEEec
Confidence 34555555 33 35699999984
No 329
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=89.85 E-value=14 Score=38.41 Aligned_cols=132 Identities=13% Similarity=0.055 Sum_probs=84.4
Q ss_pred EecccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCC-CHHHHHHH
Q 012478 92 QGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYG-NAMNVKRT 170 (462)
Q Consensus 92 v~p~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG-~~~nv~rt 170 (462)
..||-.+.-..+.+.++|++.+-+.-... + .+...++++.+ +..+.-+.+-....+. +++.+.+.
T Consensus 83 l~pg~~~~~dl~~a~~~gvd~iri~~~~~--------e-----~d~~~~~i~~a-k~~G~~v~~~l~~s~~~~~e~l~~~ 148 (333)
T TIGR03217 83 LLPGIGTVHDLKAAYDAGARTVRVATHCT--------E-----ADVSEQHIGMA-RELGMDTVGFLMMSHMTPPEKLAEQ 148 (333)
T ss_pred eccCccCHHHHHHHHHCCCCEEEEEeccc--------h-----HHHHHHHHHHH-HHcCCeEEEEEEcccCCCHHHHHHH
Confidence 34666677677888889999888653110 0 02233444433 3345555555444443 57889999
Q ss_pred HHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeE--EEEecchhhcccHHHHHHHHHH
Q 012478 171 VKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIV--IVARTDSRQALSLEESLRRSRA 248 (462)
Q Consensus 171 Vk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~v--IiARTDA~~~~gldeAI~RakA 248 (462)
+++++++|+..|.|-|.. |. ..++++.++++++++.. +++.- +-+..+ +.=++.-+.+
T Consensus 149 a~~~~~~Ga~~i~i~DT~-----G~------~~P~~v~~~v~~l~~~l---~~~i~ig~H~Hnn------lGla~ANsla 208 (333)
T TIGR03217 149 AKLMESYGADCVYIVDSA-----GA------MLPDDVRDRVRALKAVL---KPETQVGFHAHHN------LSLAVANSIA 208 (333)
T ss_pred HHHHHhcCCCEEEEccCC-----CC------CCHHHHHHHHHHHHHhC---CCCceEEEEeCCC------CchHHHHHHH
Confidence 999999999999999985 43 34577888888887653 23333 333322 2334667778
Q ss_pred hHhcCCcEE
Q 012478 249 FADAGADVL 257 (462)
Q Consensus 249 y~eAGAD~I 257 (462)
..++||+.|
T Consensus 209 Ai~aGa~~i 217 (333)
T TIGR03217 209 AIEAGATRI 217 (333)
T ss_pred HHHhCCCEE
Confidence 889999973
No 330
>PLN02489 homocysteine S-methyltransferase
Probab=89.79 E-value=3.6 Score=42.80 Aligned_cols=45 Identities=24% Similarity=0.448 Sum_probs=35.2
Q ss_pred HHHHHHHhHhcCCcEEEecCCCCHHHHHHHHHhCC----CCceeeeeee
Q 012478 242 SLRRSRAFADAGADVLFIDALASKEEMKAFCEISP----LVPKMANMLE 286 (462)
Q Consensus 242 AI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~----~vP~~~N~l~ 286 (462)
--++++++.++|+|+|++|-+++.+|++.+++.+. .+|.++.+..
T Consensus 169 ~~~qi~~l~~~gvD~i~~ET~~~l~E~~a~~~~~~~~~~~~p~~iS~t~ 217 (335)
T PLN02489 169 HRRRLQVLAEAGPDLIAFETIPNKLEAQAYVELLEEENIKIPAWISFNS 217 (335)
T ss_pred HHHHHHHHHhCCCCEEEEeccCChHHHHHHHHHHHHcCCCCeEEEEEEe
Confidence 34568889999999999999999999988876432 3677777653
No 331
>PLN02535 glycolate oxidase
Probab=89.74 E-value=1.6 Score=46.09 Aligned_cols=95 Identities=18% Similarity=0.114 Sum_probs=63.0
Q ss_pred chHHHHHHHHhCCCceEecccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhc--CCcE
Q 012478 76 SPAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV--SIPV 153 (462)
Q Consensus 76 ~~a~~LR~ll~~~~~iv~p~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~--~iPV 153 (462)
+..+.||+.. +.++++-|+-+.-.|+.+.++|+|+|.+|+.+- ...|.+..+++- ...|.+++ ++||
T Consensus 213 ~~i~~lr~~~--~~PvivKgV~~~~dA~~a~~~GvD~I~vsn~GG-----r~~d~~~~t~~~----L~ev~~av~~~ipV 281 (364)
T PLN02535 213 KDIEWLRSIT--NLPILIKGVLTREDAIKAVEVGVAGIIVSNHGA-----RQLDYSPATISV----LEEVVQAVGGRVPV 281 (364)
T ss_pred HHHHHHHhcc--CCCEEEecCCCHHHHHHHHhcCCCEEEEeCCCc-----CCCCCChHHHHH----HHHHHHHHhcCCCE
Confidence 3344555533 468999999999999999999999999997551 133545444433 33344433 5999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCC
Q 012478 154 IGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQ 187 (462)
Q Consensus 154 IaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq 187 (462)
|+|. |..+..++. +....||.+|.|---
T Consensus 282 i~dG--GIr~g~Dv~----KALalGA~aV~vGr~ 309 (364)
T PLN02535 282 LLDG--GVRRGTDVF----KALALGAQAVLVGRP 309 (364)
T ss_pred EeeC--CCCCHHHHH----HHHHcCCCEEEECHH
Confidence 9883 444444454 344689999999543
No 332
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=89.74 E-value=3.1 Score=42.11 Aligned_cols=83 Identities=13% Similarity=0.200 Sum_probs=60.1
Q ss_pred HHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHh
Q 012478 170 TVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAF 249 (462)
Q Consensus 170 tVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy 249 (462)
.++.+..+|.+.|.|+-+ |. .++.+++..-|+++... +...+.|.-... . ...+..
T Consensus 31 ~~E~~a~~GfD~v~iD~E-------Hg----~~~~~~l~~~i~a~~~~------g~~~lVRvp~~~----~---~~i~r~ 86 (267)
T PRK10128 31 MAEIAATSGYDWLLIDGE-------HA----PNTIQDLYHQLQAIAPY------ASQPVIRPVEGS----K---PLIKQV 86 (267)
T ss_pred HHHHHHHcCCCEEEEccc-------cC----CCCHHHHHHHHHHHHhc------CCCeEEECCCCC----H---HHHHHH
Confidence 345667899999999655 53 45777777777776533 344566764322 1 235668
Q ss_pred HhcCCcEEEecCCCCHHHHHHHHHhCC
Q 012478 250 ADAGADVLFIDALASKEEMKAFCEISP 276 (462)
Q Consensus 250 ~eAGAD~Ifie~~~s~eei~~i~~~v~ 276 (462)
.++||+.|+++.+.+.|+++++++...
T Consensus 87 LD~GA~GIivP~V~saeeA~~~V~a~r 113 (267)
T PRK10128 87 LDIGAQTLLIPMVDTAEQARQVVSATR 113 (267)
T ss_pred hCCCCCeeEecCcCCHHHHHHHHHhcC
Confidence 899999999999999999999998753
No 333
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=89.71 E-value=3.3 Score=37.72 Aligned_cols=96 Identities=17% Similarity=0.176 Sum_probs=60.3
Q ss_pred HHHHHHHHhCCCceEecccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCC-CCCCHHHHHHHHHHHHhhcCCcEEEe
Q 012478 78 AKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDT-GFISYGEMVDQGQLITQAVSIPVIGD 156 (462)
Q Consensus 78 a~~LR~ll~~~~~iv~p~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~-g~vsl~Eml~~~~~I~ra~~iPVIaD 156 (462)
...+++++.. +..+...+++...++.+.+.|+|.+.++..--+ ...+.. ...++ +..+.+++..++||+++
T Consensus 85 ~~~~~~~~~~-~~~~g~~~~t~~~~~~~~~~g~d~i~~~~~~~~---~~~~~~~~~~~~----~~~~~~~~~~~~pv~a~ 156 (196)
T cd00564 85 VAEARALLGP-DLIIGVSTHSLEEALRAEELGADYVGFGPVFPT---PTKPGAGPPLGL----ELLREIAELVEIPVVAI 156 (196)
T ss_pred HHHHHHHcCC-CCEEEeeCCCHHHHHHHhhcCCCEEEECCccCC---CCCCCCCCCCCH----HHHHHHHHhCCCCEEEE
Confidence 3455665543 455666778888888888899999998743211 112221 22232 33444555578999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCccEEEeCCCC
Q 012478 157 GDNGYGNAMNVKRTVKGYIKAGFAGIILEDQV 188 (462)
Q Consensus 157 ~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~ 188 (462)
|+.. .++++.+.++|++||.+-...
T Consensus 157 -----GGi~--~~~i~~~~~~Ga~~i~~g~~i 181 (196)
T cd00564 157 -----GGIT--PENAAEVLAAGADGVAVISAI 181 (196)
T ss_pred -----CCCC--HHHHHHHHHcCCCEEEEehHh
Confidence 3321 256778888999999886554
No 334
>PRK15458 tagatose 6-phosphate aldolase subunit KbaZ; Provisional
Probab=89.61 E-value=34 Score=37.11 Aligned_cols=207 Identities=18% Similarity=0.240 Sum_probs=122.5
Q ss_pred HHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCc---EEEeCCCC----CCC--HH----HHHHH
Q 012478 104 LVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIP---VIGDGDNG----YGN--AM----NVKRT 170 (462)
Q Consensus 104 l~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iP---VIaD~DtG----yG~--~~----nv~rt 170 (462)
.+.+.|+..++-++.--....=|| +| ++-.++.+.+..|++..+.| ||.=.|++ |-+ .. ++.+.
T Consensus 36 ~a~~~~~pvLiEAT~NQVnq~GGY--TG-mtP~dF~~~V~~iA~~~gf~~~~iiLGGDHLGPn~Wq~lpa~eAM~~A~~l 112 (426)
T PRK15458 36 YALANDSPLLIEATSNQVDQFGGY--TG-MTPADFRGFVCQLADSLNFPQEALILGGDHLGPNRWQNLPAAQAMANADDL 112 (426)
T ss_pred HHhhcCCcEEEEeccccccccCCc--CC-CCHHHHHHHHHHHHHHcCCChhhEEeecCCCCCccccCCCHHHHHHHHHHH
Confidence 344558888887743332322367 44 78889999999999998876 68999996 111 22 45566
Q ss_pred HHHHHHhCccEEEeCCCCCCCCCCCCCCCc-ccCHHHHHHHHHHHH----HHH-HhhC-CCe-EEEEecch---------
Q 012478 171 VKGYIKAGFAGIILEDQVSPKGCGHTRGRK-VVSREEAVMRIKAAV----DAR-KESG-SDI-VIVARTDS--------- 233 (462)
Q Consensus 171 Vk~l~~AGaaGI~IEDq~~PKrCGH~~gk~-Lvp~ee~~~kI~AA~----~Ar-~~~g-~d~-vIiARTDA--------- 233 (462)
++.+++||..=||| |-.. .|- |++ -++-+..++|-.... +++ +..| ++. .|| =|+.
T Consensus 113 i~ayV~AGF~kIHL-D~Sm--~ca---gdp~pL~d~~vA~Raa~L~~~aE~~a~~~~~~~~~vYvI-GTEvP~pGGa~~~ 185 (426)
T PRK15458 113 IKSYVAAGFKKIHL-DCSM--SCA---DDPIPLTDEIVAERAARLAKIAEETCREHFGESDLVYVI-GTEVPVPGGAHET 185 (426)
T ss_pred HHHHHHcCCceEEe-cCCC--CCC---CCCCCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEe-ccccCCCCchhhh
Confidence 78888999999999 4332 252 333 233355555533122 233 2212 233 333 2333
Q ss_pred ------hhcccHHHHHHHH-HHhHhcCCcE-----E--Ee-cCC---------CCHHHHHHHHHhCCCCceeeeeeecCC
Q 012478 234 ------RQALSLEESLRRS-RAFADAGADV-----L--FI-DAL---------ASKEEMKAFCEISPLVPKMANMLEGGG 289 (462)
Q Consensus 234 ------~~~~gldeAI~Ra-kAy~eAGAD~-----I--fi-e~~---------~s~eei~~i~~~v~~vP~~~N~l~~~g 289 (462)
...+.++.+|+.- ++|.++|-+. | ++ +|+ -+.+..+.+.+.+...|.+ +.|. -
T Consensus 186 ~~~~~vTs~e~~~~Ti~~h~~af~~~GL~~aw~rvi~~VVQpGVef~~~~V~~y~~~~A~~Ls~~~~~~~~l--vfEa-H 262 (426)
T PRK15458 186 LSELAVTTPDAARATLEAHRHAFEKQGLNAIWPRIIGLVVQPGVEFDHTNVIDYQPEKASALSQMVENYETL--VFEA-H 262 (426)
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHcCchhhhccceEEEEeCCeeecCcCccccCHHHHHHHHHHHHhCCCc--eeec-C
Confidence 1123466778877 8899999543 2 22 444 1345555555544333433 3453 3
Q ss_pred CCCCCCHH---HHHhcCCCEEeccchHHHHHHHHHHH
Q 012478 290 KTPILNPL---ELEELGFKLVAYPLSLIGVSVRAMQD 323 (462)
Q Consensus 290 ~tP~ls~~---eL~~lGv~~V~yp~~ll~aa~~Am~~ 323 (462)
.|.+.+.. +|-+.||...-.|+.+-++...|+-.
T Consensus 263 STDYQt~~al~~lv~dgfaiLKVGPaLTfalReAlfa 299 (426)
T PRK15458 263 STDYQTPQALRQLVIDHFAILKVGPALTFALREALFS 299 (426)
T ss_pred CccCCCHHHHHHHHhcCceeeeechhHhHHHHHHHHH
Confidence 46666654 45667999999999988776666643
No 335
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=89.58 E-value=2.3 Score=42.46 Aligned_cols=83 Identities=18% Similarity=0.139 Sum_probs=58.8
Q ss_pred HHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHh
Q 012478 170 TVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAF 249 (462)
Q Consensus 170 tVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy 249 (462)
.++.+..+|.+.|.|+-+ |. .++.+++..-|+|+... +...+.|.-... .. ..+..
T Consensus 25 ~~e~~a~~G~D~v~iD~E-------Hg----~~~~~~~~~~~~a~~~~------g~~~~VRvp~~~----~~---~i~r~ 80 (249)
T TIGR03239 25 TTEVLGLAGFDWLLLDGE-------HA----PNDVLTFIPQLMALKGS------ASAPVVRPPWNE----PV---IIKRL 80 (249)
T ss_pred HHHHHHhcCCCEEEEecc-------cC----CCCHHHHHHHHHHHhhc------CCCcEEECCCCC----HH---HHHHH
Confidence 345667899999999665 53 45667776666665433 345566764321 12 34567
Q ss_pred HhcCCcEEEecCCCCHHHHHHHHHhCC
Q 012478 250 ADAGADVLFIDALASKEEMKAFCEISP 276 (462)
Q Consensus 250 ~eAGAD~Ifie~~~s~eei~~i~~~v~ 276 (462)
.++||+.|+++.+.+.|+++++++...
T Consensus 81 LD~Ga~gIivP~v~taeea~~~v~a~k 107 (249)
T TIGR03239 81 LDIGFYNFLIPFVESAEEAERAVAATR 107 (249)
T ss_pred hcCCCCEEEecCcCCHHHHHHHHHHcC
Confidence 799999999999999999999998654
No 336
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=89.54 E-value=12 Score=39.15 Aligned_cols=267 Identities=13% Similarity=0.091 Sum_probs=137.6
Q ss_pred HHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhc-CCcEEEeCCCCCCCHHHHHHHHHHHHHhCcc
Q 012478 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV-SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFA 180 (462)
Q Consensus 102 Arl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~-~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaa 180 (462)
|+.+.++|++.|=++ +|-.+ -+| .+.++.|.+.. +.-+++ ++.+ ..+.++...++|+.
T Consensus 29 a~~L~~~Gv~~IEvG----------~p~~~---~~~-~e~i~~i~~~~~~~~i~~-----~~r~--~~~di~~a~~~g~~ 87 (365)
T TIGR02660 29 ARALDEAGVDELEVG----------IPAMG---EEE-RAVIRAIVALGLPARLMA-----WCRA--RDADIEAAARCGVD 87 (365)
T ss_pred HHHHHHcCCCEEEEe----------CCCCC---HHH-HHHHHHHHHcCCCcEEEE-----EcCC--CHHHHHHHHcCCcC
Confidence 456778899988875 33221 111 23455554432 222222 2211 14456777789999
Q ss_pred EEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEec
Q 012478 181 GIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFID 260 (462)
Q Consensus 181 GI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie 260 (462)
.|+|-..+++- |...+-=.+.++.++++..+++..++.|..+. ..=.|+ .....+..++-+++..++|||.|.+.
T Consensus 88 ~i~i~~~~Sd~---~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~-~~~ed~-~r~~~~~l~~~~~~~~~~Ga~~i~l~ 162 (365)
T TIGR02660 88 AVHISIPVSDL---QIEAKLRKDRAWVLERLARLVSFARDRGLFVS-VGGEDA-SRADPDFLVELAEVAAEAGADRFRFA 162 (365)
T ss_pred EEEEEEccCHH---HHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEE-EeecCC-CCCCHHHHHHHHHHHHHcCcCEEEEc
Confidence 99998765431 21111113468888888777766666553322 222333 23457888889999999999999875
Q ss_pred ---CCCCHHHHHHHHHhCCC-CceeeeeeecCCCCCCCC---HHHHHhcCCCEEeccchHH--HHHHHHHHHHHHHHH-c
Q 012478 261 ---ALASKEEMKAFCEISPL-VPKMANMLEGGGKTPILN---PLELEELGFKLVAYPLSLI--GVSVRAMQDALTAIK-G 330 (462)
Q Consensus 261 ---~~~s~eei~~i~~~v~~-vP~~~N~l~~~g~tP~ls---~~eL~~lGv~~V~yp~~ll--~aa~~Am~~~l~~l~-~ 330 (462)
|.-+++++.++.+.+.. +++++.+ .... +..+. .-.--+.|++.|--....+ ++...++++.+..|+ .
T Consensus 163 DT~G~~~P~~v~~lv~~l~~~~~v~l~~-H~HN-d~GlA~ANalaA~~aGa~~vd~tl~GiGeraGN~~lE~lv~~L~~~ 240 (365)
T TIGR02660 163 DTVGILDPFSTYELVRALRQAVDLPLEM-HAHN-DLGMATANTLAAVRAGATHVNTTVNGLGERAGNAALEEVAMALKRL 240 (365)
T ss_pred ccCCCCCHHHHHHHHHHHHHhcCCeEEE-EecC-CCChHHHHHHHHHHhCCCEEEEEeeccccccccCCHHHHHHHHHHh
Confidence 34566777766654321 1222222 2111 12222 2333466877775444433 344455555555552 2
Q ss_pred CCCCCCCCCCCHHHHHHhcCcccHHHHHHhhcccccccccccccCCCCCCCCCCcchhhhhcCCCCCCeeEeeCccccc
Q 012478 331 GRIPSPGSMPSFQEIKETLGFNTYYEEEKRYATSMRRLSSENVTSNSYDTQPMAQDDTARRGQSSQDPIVEVITPEVYT 409 (462)
Q Consensus 331 g~~~~~~~~~s~~e~~~lvg~~~~~~~e~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (462)
.+... .+.++.+.++ .++.+....+...+ ...-.|.|.++.+.---.|.-.+... ..|.+.|+...
T Consensus 241 ~g~~~---~idl~~l~~~---s~~v~~~~~~~~~~---~~p~vG~~~f~h~sGiH~~~i~k~~~----~Ye~~~P~~vG 306 (365)
T TIGR02660 241 LGRDT---GIDTSRLPAL---SQLVARASGRPIPP---QKPVVGESVFTHESGIHVDGLLKDPR----TYEPFDPELVG 306 (365)
T ss_pred cCCCC---CcCHHHHHHH---HHHHHHHhCCCCCC---CCCcccHhHHHhccchhHHHHhCCcc----cCCCcCHHHcC
Confidence 22111 1233333222 22222222222222 23456777777666555555554322 34446676554
No 337
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=89.54 E-value=26 Score=35.89 Aligned_cols=85 Identities=14% Similarity=0.126 Sum_probs=58.1
Q ss_pred HHHHHHhCCcEEEec-c-HHHHhhhccCC-CCCCCCHHHHHHHHHHHHhh-c--CCcEEEeCCCCC--CCHHHHHHHHHH
Q 012478 102 AKLVEKSGFSFCFTS-G-FSISAARLALP-DTGFISYGEMVDQGQLITQA-V--SIPVIGDGDNGY--GNAMNVKRTVKG 173 (462)
Q Consensus 102 Arl~e~aGfdaI~vS-G-~avSas~lG~P-D~g~vsl~Eml~~~~~I~ra-~--~iPVIaD~DtGy--G~~~nv~rtVk~ 173 (462)
.+.++++|+.+|.+= . +.=-+..+|.. ...+++.+|+++.++.+.++ . +++|+|=-|.-. .+...+.+-.+.
T Consensus 98 V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~a 177 (285)
T TIGR02320 98 VRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEA 177 (285)
T ss_pred HHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHHHHHHHHHH
Confidence 355667899999983 1 00000122322 23578999999999998765 2 488998877632 135666667899
Q ss_pred HHHhCccEEEeCC
Q 012478 174 YIKAGFAGIILED 186 (462)
Q Consensus 174 l~~AGaaGI~IED 186 (462)
|.+|||++|.++.
T Consensus 178 y~eAGAD~ifv~~ 190 (285)
T TIGR02320 178 YAEAGADGIMIHS 190 (285)
T ss_pred HHHcCCCEEEecC
Confidence 9999999999983
No 338
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=89.44 E-value=1.8 Score=44.18 Aligned_cols=64 Identities=16% Similarity=0.284 Sum_probs=46.0
Q ss_pred HHHHHHhHhcCCcEEEecCCCCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcCCCEEeccc
Q 012478 243 LRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPL 311 (462)
Q Consensus 243 I~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~ 311 (462)
++.++.+.++|||+|+++-. +++++++.++.++.. ..++..|....-+..++.+.|+..++.+.
T Consensus 203 lee~~ea~~~gaDiImLDn~-s~e~l~~av~~~~~~----~~leaSGgI~~~ni~~yA~tGVD~Is~ga 266 (281)
T PRK06543 203 LDQIEPVLAAGVDTIMLDNF-SLDDLREGVELVDGR----AIVEASGNVNLNTVGAIASTGVDVISVGA 266 (281)
T ss_pred HHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHhCCC----eEEEEECCCCHHHHHHHHhcCCCEEEeCc
Confidence 33566677899999999987 458999988876531 13443233333467999999999999875
No 339
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=89.39 E-value=14 Score=37.70 Aligned_cols=169 Identities=13% Similarity=0.145 Sum_probs=95.7
Q ss_pred HHHHHh-CCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHH-HHHHHHHHHH--HhC
Q 012478 103 KLVEKS-GFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAM-NVKRTVKGYI--KAG 178 (462)
Q Consensus 103 rl~e~a-GfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~-nv~rtVk~l~--~AG 178 (462)
+++++. +.-+.|==++++- -.+| |+ |.--+++.++.++. .++|||+|+=.| +.. .+...++.+. +.|
T Consensus 45 ~ivd~~~~~v~~vK~gla~f-~~~G-~~-G~~~l~~~i~~l~~----~g~~VilD~K~~--DI~nTv~~ya~a~~~~~~g 115 (278)
T PRK00125 45 IIVDATADLVAAFKPQIAYF-EAHG-AE-GLAQLERTIAYLRE----AGVLVIADAKRG--DIGSTAEAYAKAAFESPLE 115 (278)
T ss_pred HHHHhcCCcccEEeccHHHH-HhcC-ch-hhhHHHHHHHHHHH----CCCcEEEEeecC--ChHHHHHHHHHHHhcCccC
Confidence 345554 2222332255542 1345 33 44445566655554 368999998875 543 3445566666 689
Q ss_pred ccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhc---------cc---HHHHHHHH
Q 012478 179 FAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQA---------LS---LEESLRRS 246 (462)
Q Consensus 179 aaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~---------~g---ldeAI~Ra 246 (462)
++++.+--. ++ .+-++.+++..++.+..++|.++|-.-.+ .+ .+...+++
T Consensus 116 ~DavTVhp~--------~G----------~d~l~~~~~~~~~~~k~vfVlvlTSnp~s~~lq~~~~~~~~~l~~~V~~~a 177 (278)
T PRK00125 116 ADAVTVSPY--------MG----------FDSLEPYLEYAEEHGKGVFVLCRTSNPGGSDLQFLRTADGRPLYQHVADLA 177 (278)
T ss_pred CcEEEECCc--------CC----------HHHHHHHHHHHHhcCCEEEEEEeCCCCCHHHHHhhhccCCCcHHHHHHHHH
Confidence 999988432 11 22344455544333457888998865321 11 35555677
Q ss_pred HHhHh-----cCCcEEEecCCCCHHHHHHHHHhCCCCceeeeeeecCCCCC-CCCHHHHHhcCC
Q 012478 247 RAFAD-----AGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTP-ILNPLELEELGF 304 (462)
Q Consensus 247 kAy~e-----AGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP-~ls~~eL~~lGv 304 (462)
..+.+ +|.|.++|-+.. .+|++++.+..+..|. +++ |-.+ .-+++++.+.|-
T Consensus 178 ~~~~~~~~~~~g~~G~VVgaT~-p~e~~~iR~~~~~~~i---L~P--GigaQGg~~~~~~~~~~ 235 (278)
T PRK00125 178 AALNNLGNCGYGSIGLVVGATF-PPELAAVRKILGGMPL---LIP--GIGAQGGDAEATVRAGG 235 (278)
T ss_pred HHHhccccCCCCCCEEEECCCC-HHHHHHHHHhCCCCeE---EeC--CcCCCCcCHHHHHHHhh
Confidence 76664 899998886643 5788888887654332 222 2211 225677666654
No 340
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=89.38 E-value=5.5 Score=43.90 Aligned_cols=274 Identities=15% Similarity=0.115 Sum_probs=142.8
Q ss_pred HHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcC---------CcEEEeCCCCCCCH--HHHHHH
Q 012478 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVS---------IPVIGDGDNGYGNA--MNVKRT 170 (462)
Q Consensus 102 Arl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~---------iPVIaD~DtGyG~~--~nv~rt 170 (462)
|+.+.++|++.|=++. |... .++.+.++.|.+... .|.+. +++.. ..+...
T Consensus 112 a~~L~~~GVd~IEvG~----------Pa~s----~~e~e~i~~i~~~~~~~~~~~~~l~~~i~----a~~R~~~~dId~a 173 (503)
T PLN03228 112 ARQLAKLRVDIMEVGF----------PGSS----EEEFEAVKTIAKTVGNEVDEETGYVPVIC----GIARCKKRDIEAA 173 (503)
T ss_pred HHHHHHcCCCEEEEeC----------CCCC----HHHHHHHHHHHHhcccccccccccceEEe----eecccCHhhHHHH
Confidence 5677788999877643 3211 445556777765421 23333 45543 345555
Q ss_pred HHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhH
Q 012478 171 VKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFA 250 (462)
Q Consensus 171 Vk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~ 250 (462)
++....+|+..|+|-=.+.+ -|...+-=.+.+|.++++..+++..++.|...+...=.|+.. .+.+-.++-+++..
T Consensus 174 ~~a~~~a~~~~V~i~i~~Sd---~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~EDa~R-td~efl~~~~~~a~ 249 (503)
T PLN03228 174 WEALKYAKRPRILAFTSTSD---IHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGCEDGGR-SDKEFLCKILGEAI 249 (503)
T ss_pred HHhhcccCCCEEEEEecCCH---HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEeccccccc-cCHHHHHHHHHHHH
Confidence 55444568888888544322 122111113578889998888877776654323333334332 34567788888999
Q ss_pred hcCCcEEEec---CCCCHHHHHHHHHh----CCCCc-eeeeeeecCCCCCCCC---HHHHHhcCCCEEeccchHH--HHH
Q 012478 251 DAGADVLFID---ALASKEEMKAFCEI----SPLVP-KMANMLEGGGKTPILN---PLELEELGFKLVAYPLSLI--GVS 317 (462)
Q Consensus 251 eAGAD~Ifie---~~~s~eei~~i~~~----v~~vP-~~~N~l~~~g~tP~ls---~~eL~~lGv~~V~yp~~ll--~aa 317 (462)
++|||.|.+. |.-.++++.++.+. ++..+ .++.+ .... +-.+. .-.--+.|++.|-.....+ ++.
T Consensus 250 ~~Gad~I~l~DTvG~~tP~~v~~lV~~l~~~~~~~~~i~I~~-H~HN-D~GlAvANslaAi~aGa~~Vd~Tv~GiGERaG 327 (503)
T PLN03228 250 KAGATSVGIADTVGINMPHEFGELVTYVKANTPGIDDIVFSV-HCHN-DLGLATANTIAGICAGARQVEVTINGIGERSG 327 (503)
T ss_pred hcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhccccCceeEe-cccC-CcChHHHHHHHHHHhCCCEEEEeccccccccC
Confidence 9999999875 34566676666644 33211 22222 1111 11121 2223377888876544433 455
Q ss_pred HHHHHHHHHHHHcCCC---CCCCCCCCHHHHHHhcCcccHHHHHHhhcccccccccccccCCCCCCCCCCcchhhhhcCC
Q 012478 318 VRAMQDALTAIKGGRI---PSPGSMPSFQEIKETLGFNTYYEEEKRYATSMRRLSSENVTSNSYDTQPMAQDDTARRGQS 394 (462)
Q Consensus 318 ~~Am~~~l~~l~~g~~---~~~~~~~s~~e~~~lvg~~~~~~~e~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (462)
..++++.+..|+.... ...+..+.++.+.+ +.++.+....+...+++ .-.|.|.|+-+.---.|.-.+...
T Consensus 328 Na~lEevv~~L~~~~~~~~~g~~t~iDl~~L~~---ls~~V~~~~g~~i~~~k---PivG~naF~heSGIH~dgilK~p~ 401 (503)
T PLN03228 328 NASLEEVVMALKCRGAYLMNGVYTGIDTRQIMA---TSKMVQEYTGMYVQPHK---PIVGANCFVHESGIHQDGILKNRS 401 (503)
T ss_pred CccHHHHHHHHHhcccccccCCCCCcCHHHHHH---HHHHHHHHhCCCCCCCC---CcccHHHHHhccchhHHHHhCCcc
Confidence 5566666666654210 00111233344432 23333333333333332 445667776665555554443322
Q ss_pred CCCCeeEeeCccccc
Q 012478 395 SQDPIVEVITPEVYT 409 (462)
Q Consensus 395 ~~~~~~~~~~~~~~~ 409 (462)
..|.+.|+...
T Consensus 402 ----tYe~~~Pe~vG 412 (503)
T PLN03228 402 ----TYEILSPEDIG 412 (503)
T ss_pred ----cccCCCHHHhC
Confidence 55667777663
No 341
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=89.20 E-value=3.2 Score=41.56 Aligned_cols=84 Identities=17% Similarity=0.159 Sum_probs=59.5
Q ss_pred HHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHH
Q 012478 169 RTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRA 248 (462)
Q Consensus 169 rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakA 248 (462)
..++.+..+|.+.|.|+-+ |. ..+.+++..-|+|+... +...+.|.-... .. ..+.
T Consensus 31 ~~~e~~a~~G~D~v~iD~E-------Hg----~~~~~~~~~~i~a~~~~------g~~~lVRvp~~~----~~---~i~r 86 (256)
T PRK10558 31 ITTEVLGLAGFDWLVLDGE-------HA----PNDVSTFIPQLMALKGS------ASAPVVRVPTNE----PV---IIKR 86 (256)
T ss_pred HHHHHHHhcCCCEEEEccc-------cC----CCCHHHHHHHHHHHhhc------CCCcEEECCCCC----HH---HHHH
Confidence 3455677899999999665 53 35677777666665432 456667764422 12 3455
Q ss_pred hHhcCCcEEEecCCCCHHHHHHHHHhCC
Q 012478 249 FADAGADVLFIDALASKEEMKAFCEISP 276 (462)
Q Consensus 249 y~eAGAD~Ifie~~~s~eei~~i~~~v~ 276 (462)
..++||+.|+++.+.+.|+++++++...
T Consensus 87 ~LD~Ga~giivP~v~tae~a~~~v~a~k 114 (256)
T PRK10558 87 LLDIGFYNFLIPFVETAEEARRAVASTR 114 (256)
T ss_pred HhCCCCCeeeecCcCCHHHHHHHHHHcC
Confidence 6799999999999999999999988643
No 342
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=89.19 E-value=2 Score=45.18 Aligned_cols=84 Identities=13% Similarity=0.098 Sum_probs=56.2
Q ss_pred ceEecccCChHHHHHHHHhCCcEEEec-cHHHHhhh-----ccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCC
Q 012478 90 VHQGPACFDALSAKLVEKSGFSFCFTS-GFSISAAR-----LALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGN 163 (462)
Q Consensus 90 ~iv~p~ayDalSArl~e~aGfdaI~vS-G~avSas~-----lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~ 163 (462)
.+++=|+-++-.|+-+..+|+|++-++ |-+-.++. .|+| .-.-+..+...++..++|||+|.---|.+
T Consensus 153 ~vIaGNV~T~e~a~~Li~aGAD~vKVGIGpGSiCtTr~vtGvG~P------QltAV~~~a~~a~~~gvpiIADGGi~~sG 226 (346)
T PRK05096 153 TICAGNVVTGEMVEELILSGADIVKVGIGPGSVCTTRVKTGVGYP------QLSAVIECADAAHGLGGQIVSDGGCTVPG 226 (346)
T ss_pred cEEEecccCHHHHHHHHHcCCCEEEEcccCCccccCccccccChh------HHHHHHHHHHHHHHcCCCEEecCCccccc
Confidence 466778999999999999999999888 43322221 2444 33344555566677789999995443322
Q ss_pred HHHHHHHHHHHHHhCccEEEeC
Q 012478 164 AMNVKRTVKGYIKAGFAGIILE 185 (462)
Q Consensus 164 ~~nv~rtVk~l~~AGaaGI~IE 185 (462)
++ +|.| .+||+.|.|-
T Consensus 227 --DI---~KAl-aaGAd~VMlG 242 (346)
T PRK05096 227 --DV---AKAF-GGGADFVMLG 242 (346)
T ss_pred --HH---HHHH-HcCCCEEEeC
Confidence 23 3444 5899999993
No 343
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=89.13 E-value=3.2 Score=41.34 Aligned_cols=84 Identities=15% Similarity=0.212 Sum_probs=59.2
Q ss_pred HHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHH
Q 012478 169 RTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRA 248 (462)
Q Consensus 169 rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakA 248 (462)
..++.+..+|++.|.|+=+ |.. .+.+++..-|+++.. .+.-++.|...... ...++
T Consensus 24 ~~~e~~~~~g~D~v~iDlE-------H~~----~~~~~~~~~~~a~~~------~g~~~~VRv~~~~~-------~~i~~ 79 (249)
T TIGR02311 24 YAAEICAGAGFDWLLIDGE-------HAP----NDVRTILSQLQALAP------YPSSPVVRPAIGDP-------VLIKQ 79 (249)
T ss_pred HHHHHHHhcCCCEEEEecc-------CCC----CCHHHHHHHHHHHHh------cCCCcEEECCCCCH-------HHHHH
Confidence 3456677899999999555 542 466666665544432 23456778654321 14677
Q ss_pred hHhcCCcEEEecCCCCHHHHHHHHHhCC
Q 012478 249 FADAGADVLFIDALASKEEMKAFCEISP 276 (462)
Q Consensus 249 y~eAGAD~Ifie~~~s~eei~~i~~~v~ 276 (462)
..++|||.|+++.+.+.|+++++++...
T Consensus 80 ~Ld~Ga~gIivP~v~s~e~a~~~v~~~~ 107 (249)
T TIGR02311 80 LLDIGAQTLLVPMIETAEQAEAAVAATR 107 (249)
T ss_pred HhCCCCCEEEecCcCCHHHHHHHHHHcC
Confidence 8999999999999999999999998754
No 344
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=89.12 E-value=2.8 Score=42.01 Aligned_cols=120 Identities=17% Similarity=0.233 Sum_probs=72.3
Q ss_pred HHHHHHHHHhhcCCcEEEeCCCCCCCH----HHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHH
Q 012478 138 MVDQGQLITQAVSIPVIGDGDNGYGNA----MNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKA 213 (462)
Q Consensus 138 ml~~~~~I~ra~~iPVIaD~DtGyG~~----~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~A 213 (462)
.+...-.+++..++++.-- .+ +-.. ..+.+-++...+.|...|-|-|+.. =+|.++.+.-|+.
T Consensus 42 ~l~eki~la~~~~V~v~~G-Gt-l~E~~~~q~~~~~Yl~~~k~lGf~~IEiS~G~~-----------~i~~~~~~rlI~~ 108 (237)
T TIGR03849 42 IVKEKIEMYKDYGIKVYPG-GT-LFEIAHSKGKFDEYLNECDELGFEAVEISDGSM-----------EISLEERCNLIER 108 (237)
T ss_pred HHHHHHHHHHHcCCeEeCC-cc-HHHHHHHhhhHHHHHHHHHHcCCCEEEEcCCcc-----------CCCHHHHHHHHHH
Confidence 4444444556677887643 11 1111 1222334566789999999988752 2566666555555
Q ss_pred HHHHHHhhCCCeEEE---Eecch--hhcccHHHHHHHHHHhHhcCCcEEEecCCC--------------CHHHHHHHHHh
Q 012478 214 AVDARKESGSDIVIV---ARTDS--RQALSLEESLRRSRAFADAGADVLFIDALA--------------SKEEMKAFCEI 274 (462)
Q Consensus 214 A~~Ar~~~g~d~vIi---ARTDA--~~~~gldeAI~RakAy~eAGAD~Ifie~~~--------------s~eei~~i~~~ 274 (462)
+++. +|.+. +.-+. ....+.++.|+++++..+||||.|++|+-. ..+.+.+|.+.
T Consensus 109 ~~~~------g~~v~~EvG~K~~~~~~~~~~~~~i~~~~~~LeAGA~~ViiEarEsg~~~Gi~~~~g~~r~d~v~~i~~~ 182 (237)
T TIGR03849 109 AKDN------GFMVLSEVGKKSPEKDSELTPDDRIKLINKDLEAGADYVIIEGRESGKNIGLFDEKGNVKEDELDVLAEN 182 (237)
T ss_pred HHhC------CCeEeccccccCCcccccCCHHHHHHHHHHHHHCCCcEEEEeehhcCCCcceeCCCCCCchHHHHHHHhh
Confidence 5433 33333 11111 223567899999999999999999999831 23567777776
Q ss_pred CC
Q 012478 275 SP 276 (462)
Q Consensus 275 v~ 276 (462)
++
T Consensus 183 l~ 184 (237)
T TIGR03849 183 VD 184 (237)
T ss_pred CC
Confidence 54
No 345
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=89.05 E-value=8.3 Score=38.26 Aligned_cols=110 Identities=15% Similarity=0.149 Sum_probs=74.5
Q ss_pred HHHHHHHhCCCceEecccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCC
Q 012478 79 KSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGD 158 (462)
Q Consensus 79 ~~LR~ll~~~~~iv~p~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~D 158 (462)
+.|-+..+.++.+.|.-|-..--+..+.++|||.|-++= .||-+....+.+.=++.++.+.+ .+.|||+-
T Consensus 117 ~~~i~~~k~~~~l~MAD~St~ee~l~a~~~G~D~IGTTL-------sGYT~~~~~~~~pDf~lvk~l~~-~~~~vIAE-- 186 (229)
T COG3010 117 EELIARIKYPGQLAMADCSTFEEGLNAHKLGFDIIGTTL-------SGYTGYTEKPTEPDFQLVKQLSD-AGCRVIAE-- 186 (229)
T ss_pred HHHHHHhhcCCcEEEeccCCHHHHHHHHHcCCcEEeccc-------ccccCCCCCCCCCcHHHHHHHHh-CCCeEEee--
Confidence 344444667788999999888889999999999998762 23333222444444455666666 78999985
Q ss_pred CCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHH
Q 012478 159 NGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAV 215 (462)
Q Consensus 159 tGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~ 215 (462)
..|.+|+.+. +.++.||.+|.+-.- +.-+++...+...+.
T Consensus 187 Gr~~tP~~Ak----~a~~~Ga~aVvVGsA-------------ITRp~~It~~F~~~i 226 (229)
T COG3010 187 GRYNTPEQAK----KAIEIGADAVVVGSA-------------ITRPEEITQWFVDAI 226 (229)
T ss_pred CCCCCHHHHH----HHHHhCCeEEEECcc-------------cCCHHHHHHHHHHHH
Confidence 3466776655 556789999988332 555677777665443
No 346
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=88.99 E-value=4.7 Score=38.79 Aligned_cols=132 Identities=19% Similarity=0.231 Sum_probs=71.6
Q ss_pred HHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHh-hCCCeEEEEecchhhcccHHHHHHHHH
Q 012478 169 RTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKE-SGSDIVIVARTDSRQALSLEESLRRSR 247 (462)
Q Consensus 169 rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~-~g~d~vIiARTDA~~~~gldeAI~Rak 247 (462)
+.++.+...|++.|.|.=+ |.. +.-..++.-..++.+...... .+.+.-++.|........+. +..+
T Consensus 12 ~~~~~a~~~g~D~vilDlE-------d~~--~~~~K~~ar~~~~~~~~~~~~~~~~~~~~~VRvn~~~~~~~~---~Dl~ 79 (221)
T PF03328_consen 12 KMLEKAAASGADFVILDLE-------DGV--PPDEKDEAREDLAEALRSIRAARAAGSEIIVRVNSLDSPHIE---RDLE 79 (221)
T ss_dssp HHHHHHHTTCSSEEEEESS-------TTS--SGGGHHHHHHHHHHHHHHHHHHTTSSSEEEEE-SSTTCHHHH---HHHH
T ss_pred HHHHHHHhcCCCEEEEeCc-------ccC--CcccchhhHHHHHHHHHhhcccccccccceecCCCCCcchhh---hhhh
Confidence 3456677789998887322 211 111122333333333333222 12456888898875432222 2233
Q ss_pred HhHhcCCcEEEecCCCCHHHHHHHHHhCCCCc----------eeeeeeecCCCCCCCCHHHHHhc-CCCEEeccchHHH
Q 012478 248 AFADAGADVLFIDALASKEEMKAFCEISPLVP----------KMANMLEGGGKTPILNPLELEEL-GFKLVAYPLSLIG 315 (462)
Q Consensus 248 Ay~eAGAD~Ifie~~~s~eei~~i~~~v~~vP----------~~~N~l~~~g~tP~ls~~eL~~l-Gv~~V~yp~~ll~ 315 (462)
..++|+|.|+++.+.+.++++++.+.+...| .++=++|.. ......+|+... |+..+.+|..=|.
T Consensus 80 -~l~~g~~gI~lP~ves~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~IET~--~gv~~~~eI~a~~~v~~l~~G~~Dls 155 (221)
T PF03328_consen 80 -ALDAGADGIVLPKVESAEDARQAVAALRYPPAGRRGANGSTKIIPMIETP--EGVENLEEIAAVPGVDGLFFGPADLS 155 (221)
T ss_dssp -HHHTTSSEEEETT--SHHHHHHHHHHHSHTTTCTTTHHCHSEEEEEE-SH--HHHHTHHHHHTSTTEEEEEE-HHHHH
T ss_pred -hcccCCCeeeccccCcHHHHHHHHHHHhhcccccccccCceEEEEeeccH--HHHhCHHhhcccCCeeEEEeCcHHHH
Confidence 8889999999999999999999987653222 233355631 112345565554 7888888776443
No 347
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=88.97 E-value=0.68 Score=50.71 Aligned_cols=65 Identities=22% Similarity=0.263 Sum_probs=47.2
Q ss_pred HHHHHHHHHhHhcCCcEEEecCCCC--H---HHHHHHHHhCCCCceee-eeeecCCCCCCCCHHHHHhcCCCEEecc
Q 012478 240 EESLRRSRAFADAGADVLFIDALAS--K---EEMKAFCEISPLVPKMA-NMLEGGGKTPILNPLELEELGFKLVAYP 310 (462)
Q Consensus 240 deAI~RakAy~eAGAD~Ifie~~~s--~---eei~~i~~~v~~vP~~~-N~l~~~g~tP~ls~~eL~~lGv~~V~yp 310 (462)
++.++|+.++.+||||+|++++.+- . +.++++.+..|..++++ |+. |+ -....+.++|+..|..+
T Consensus 247 ~~~~~r~~~l~~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~-----t~-e~a~~a~~aGaD~i~vg 317 (505)
T PLN02274 247 ESDKERLEHLVKAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVV-----TM-YQAQNLIQAGVDGLRVG 317 (505)
T ss_pred ccHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCC-----CH-HHHHHHHHcCcCEEEEC
Confidence 5678999999999999999987642 2 56777777777655543 432 11 14577899999999664
No 348
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=88.90 E-value=2.8 Score=43.82 Aligned_cols=94 Identities=16% Similarity=0.027 Sum_probs=58.9
Q ss_pred HHHHHHhC-CCceEecccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhh--cCCcEEEe
Q 012478 80 SLRQILEL-PGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQA--VSIPVIGD 156 (462)
Q Consensus 80 ~LR~ll~~-~~~iv~p~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra--~~iPVIaD 156 (462)
.+..+.+. +.++++-++-+.-.|+.+.++|+|+|.+|+.+ .. .-|...-++ +.+..++..... ..+|||+|
T Consensus 204 ~i~~l~~~~~~PvivKgv~~~~dA~~a~~~G~d~I~vsnhg--G~---~~d~~~~~~-~~L~~i~~~~~~~~~~~~vi~~ 277 (344)
T cd02922 204 DIKWLRKHTKLPIVLKGVQTVEDAVLAAEYGVDGIVLSNHG--GR---QLDTAPAPI-EVLLEIRKHCPEVFDKIEVYVD 277 (344)
T ss_pred HHHHHHHhcCCcEEEEcCCCHHHHHHHHHcCCCEEEEECCC--cc---cCCCCCCHH-HHHHHHHHHHHHhCCCceEEEe
Confidence 44444432 45788889999999999999999999999644 11 124332232 333333333322 25999998
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCccEEEeC
Q 012478 157 GDNGYGNAMNVKRTVKGYIKAGFAGIILE 185 (462)
Q Consensus 157 ~DtGyG~~~nv~rtVk~l~~AGaaGI~IE 185 (462)
. |..+..++. +++..||.+|.|-
T Consensus 278 G--GIr~G~Dv~----kalaLGA~aV~iG 300 (344)
T cd02922 278 G--GVRRGTDVL----KALCLGAKAVGLG 300 (344)
T ss_pred C--CCCCHHHHH----HHHHcCCCEEEEC
Confidence 3 233333444 4446899999994
No 349
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=88.86 E-value=22 Score=37.01 Aligned_cols=151 Identities=15% Similarity=0.093 Sum_probs=82.8
Q ss_pred HHHHHHHHhCCcEEEec---cHHHHhhhc----cCCCCCCCCHHH----HHHHHHHHHhhcCC-cEEEeCC-----CC--
Q 012478 100 LSAKLVEKSGFSFCFTS---GFSISAARL----ALPDTGFISYGE----MVDQGQLITQAVSI-PVIGDGD-----NG-- 160 (462)
Q Consensus 100 lSArl~e~aGfdaI~vS---G~avSas~l----G~PD~g~vsl~E----ml~~~~~I~ra~~i-PVIaD~D-----tG-- 160 (462)
-+|+.+.++|||.|-+- |+-++-..- =..|---=+++. +++.++.|.++++. ||.+=+- .|
T Consensus 156 ~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~ 235 (338)
T cd02933 156 QAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMG 235 (338)
T ss_pred HHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCCCC
Confidence 57899999999999886 444432110 112221113432 23445555555543 6665331 12
Q ss_pred CC-CHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccH
Q 012478 161 YG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSL 239 (462)
Q Consensus 161 yG-~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gl 239 (462)
+| +.+...+.++.++++|++.|++-....... . .+ ..-+++++|+.++ +..++++++-+
T Consensus 236 ~~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~-~--~~----~~~~~~~~ik~~~------~ipvi~~G~i~------- 295 (338)
T cd02933 236 DSDPEATFSYLAKELNKRGLAYLHLVEPRVAGN-P--ED----QPPDFLDFLRKAF------KGPLIAAGGYD------- 295 (338)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCc-c--cc----cchHHHHHHHHHc------CCCEEEECCCC-------
Confidence 23 346778889999999999999954432110 0 00 1123455554432 34566666653
Q ss_pred HHHHHHHHHhHhcC-CcEEEec--CCCCHHHHHHHHH
Q 012478 240 EESLRRSRAFADAG-ADVLFID--ALASKEEMKAFCE 273 (462)
Q Consensus 240 deAI~RakAy~eAG-AD~Ifie--~~~s~eei~~i~~ 273 (462)
.+.+..+.+.| ||+|.+- .+.+++.++++.+
T Consensus 296 ---~~~a~~~l~~g~~D~V~~gR~~ladP~~~~k~~~ 329 (338)
T cd02933 296 ---AESAEAALADGKADLVAFGRPFIANPDLVERLKN 329 (338)
T ss_pred ---HHHHHHHHHcCCCCEEEeCHhhhhCcCHHHHHhc
Confidence 22344455444 9999883 3456666666654
No 350
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=88.83 E-value=2.6 Score=44.85 Aligned_cols=82 Identities=21% Similarity=0.191 Sum_probs=54.6
Q ss_pred CCceEecccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhc--CCcEEEeCCCCCCCHH
Q 012478 88 PGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV--SIPVIGDGDNGYGNAM 165 (462)
Q Consensus 88 ~~~iv~p~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~--~iPVIaD~DtGyG~~~ 165 (462)
+.++++-|+-+.-.|+.+.++|+|+|.+|+.+-- ..|...-++ +++.. |++++ ++|||+|. |+-+..
T Consensus 245 ~~pvivKgV~s~~dA~~a~~~Gvd~I~Vs~hGGr-----~~d~~~~t~-~~L~~---i~~a~~~~~~vi~dG--GIr~g~ 313 (381)
T PRK11197 245 DGPMVIKGILDPEDARDAVRFGADGIVVSNHGGR-----QLDGVLSSA-RALPA---IADAVKGDITILADS--GIRNGL 313 (381)
T ss_pred CCCEEEEecCCHHHHHHHHhCCCCEEEECCCCCC-----CCCCcccHH-HHHHH---HHHHhcCCCeEEeeC--CcCcHH
Confidence 5689999999999999999999999999975421 224332333 33322 22332 59999983 333444
Q ss_pred HHHHHHHHHHHhCccEEEe
Q 012478 166 NVKRTVKGYIKAGFAGIIL 184 (462)
Q Consensus 166 nv~rtVk~l~~AGaaGI~I 184 (462)
++. |.+ ..||.+|.+
T Consensus 314 Di~---KAL-aLGA~~V~i 328 (381)
T PRK11197 314 DVV---RMI-ALGADTVLL 328 (381)
T ss_pred HHH---HHH-HcCcCceeE
Confidence 444 333 479999988
No 351
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=88.63 E-value=8.4 Score=39.34 Aligned_cols=144 Identities=10% Similarity=0.051 Sum_probs=78.0
Q ss_pred HHHHHHhC--CCceEecccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHH---------HHHHHHHHHHhh
Q 012478 80 SLRQILEL--PGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYG---------EMVDQGQLITQA 148 (462)
Q Consensus 80 ~LR~ll~~--~~~iv~p~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~---------Eml~~~~~I~ra 148 (462)
++-+.++. ++..++-+==-....|.+++. |+.++| ++ ..++|+.|.-++--+ .+...++.+.+.
T Consensus 111 ~~V~~~~~~~~~~~I~~TRKT~Pg~R~l~k~---Av~~GG-g~-~HR~gLsd~ilikdnHi~~~g~~~~i~~av~~~r~~ 185 (277)
T TIGR01334 111 KMVTLAKKISPMAVVACTRKAIPLTRPLAVK---AVLAAG-GV-IHRIGLSETLLVFANHRTFLNDNFDWGGAIGRLKQT 185 (277)
T ss_pred HHHHHHHhcCCCCEEEecCCCCCChhHHHHH---HHHhCC-Cc-CeecCCchhheehHHHHHHhCCcccHHHHHHHHHHh
Confidence 34444432 333333333333344666664 455555 33 247888887444322 222333333332
Q ss_pred c-CCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEE
Q 012478 149 V-SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVI 227 (462)
Q Consensus 149 ~-~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vI 227 (462)
. ..+|.|+.+ + .+-+++..++|++.|.+... +++++.+-++.+ +..++.+.|
T Consensus 186 ~~~~kIeVEv~----t----leea~ea~~~GaDiI~lDn~---------------~~e~l~~~v~~l----~~~~~~~~l 238 (277)
T TIGR01334 186 APERKITVEAD----T----IEQALTVLQASPDILQLDKF---------------TPQQLHHLHERL----KFFDHIPTL 238 (277)
T ss_pred CCCCCEEEECC----C----HHHHHHHHHcCcCEEEECCC---------------CHHHHHHHHHHH----hccCCCEEE
Confidence 2 477999987 3 33345667899999999532 234443333322 111244443
Q ss_pred EEecchhhcccHHHHHHHHHHhHhcCCcEEEecCCC
Q 012478 228 VARTDSRQALSLEESLRRSRAFADAGADVLFIDALA 263 (462)
Q Consensus 228 iARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~~~ 263 (462)
-+ . -++. ++.+.+|++.|+|.|.+-++.
T Consensus 239 ea----s--GGI~--~~ni~~ya~~GvD~is~gal~ 266 (277)
T TIGR01334 239 AA----A--GGIN--PENIADYIEAGIDLFITSAPY 266 (277)
T ss_pred EE----E--CCCC--HHHHHHHHhcCCCEEEeCcce
Confidence 22 2 2333 568999999999999987764
No 352
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=88.57 E-value=7 Score=40.04 Aligned_cols=158 Identities=9% Similarity=0.047 Sum_probs=90.1
Q ss_pred HHHHHHHHhC-CcEEEec-cHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHHh
Q 012478 100 LSAKLVEKSG-FSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKA 177 (462)
Q Consensus 100 lSArl~e~aG-fdaI~vS-G~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~A 177 (462)
-.|+.++++| +|++=+- |.-- .-|.++.+ ...+.+.+.++.|.+.+++||++-+.--+ +..++.+.+..+.+.
T Consensus 109 ~~a~~~~~~g~ad~iElN~ScPn---~~~~~~~g-~d~~~~~~i~~~v~~~~~~Pv~vKlsp~~-~~~~~a~~~~~~~~~ 183 (310)
T PRK02506 109 TILKKIQASDFNGLVELNLSCPN---VPGKPQIA-YDFETTEQILEEVFTYFTKPLGVKLPPYF-DIVHFDQAAAIFNKF 183 (310)
T ss_pred HHHHHHhhcCCCCEEEEECCCCC---CCCccccc-cCHHHHHHHHHHHHHhcCCccEEecCCCC-CHHHHHHHHHHhCcC
Confidence 3456667777 7887765 3221 11333432 34566777788888888999999988755 556677766666677
Q ss_pred CccEEEeCCC---------C-C-C----C-CCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHH
Q 012478 178 GFAGIILEDQ---------V-S-P----K-GCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEE 241 (462)
Q Consensus 178 GaaGI~IEDq---------~-~-P----K-rCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~glde 241 (462)
|++||+.=.. . . | + ..|-+.|+.+-|.. ...|..+ ++..++++-|+|=.-- ..-+
T Consensus 184 g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~a--l~~v~~~---~~~~~~~ipIig~GGI---~s~~- 254 (310)
T PRK02506 184 PLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGGDYIKPTA--LANVRAF---YQRLNPSIQIIGTGGV---KTGR- 254 (310)
T ss_pred ceEEEEEeccCCCceEEecCCCCccccCCCCCCcCCchhccHHH--HHHHHHH---HHhcCCCCCEEEECCC---CCHH-
Confidence 8887644321 0 0 1 1 12334567776664 3333333 3323346767765432 2234
Q ss_pred HHHHHHHhHhcCCcEEEecCC---CCHHHHHHHHHh
Q 012478 242 SLRRSRAFADAGADVLFIDAL---ASKEEMKAFCEI 274 (462)
Q Consensus 242 AI~RakAy~eAGAD~Ifie~~---~s~eei~~i~~~ 274 (462)
.+..|..||||+|.+=.- ...+.+.++.+.
T Consensus 255 ---da~e~i~aGA~~Vqv~ta~~~~gp~~~~~i~~~ 287 (310)
T PRK02506 255 ---DAFEHILCGASMVQVGTALHKEGPAVFERLTKE 287 (310)
T ss_pred ---HHHHHHHcCCCHHhhhHHHHHhChHHHHHHHHH
Confidence 355567899999876321 133445555544
No 353
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=88.50 E-value=2.4 Score=44.84 Aligned_cols=99 Identities=15% Similarity=0.173 Sum_probs=54.8
Q ss_pred HHHHHHHHhCCC-ceEecccCChHHHHHHHHhCCcEEEec-cHHHHhhhccCCCCC-CCCHHHHHHHHHHHHhh------
Q 012478 78 AKSLRQILELPG-VHQGPACFDALSAKLVEKSGFSFCFTS-GFSISAARLALPDTG-FISYGEMVDQGQLITQA------ 148 (462)
Q Consensus 78 a~~LR~ll~~~~-~iv~p~ayDalSArl~e~aGfdaI~vS-G~avSas~lG~PD~g-~vsl~Eml~~~~~I~ra------ 148 (462)
-..+.+++++-+ ++++=++.+.-.|+-+.++|+|+|.++ |.+.. ..+....+ .++.-..+..+...++.
T Consensus 176 ~~~i~~~ik~~~ipVIaG~V~t~e~A~~l~~aGAD~V~VG~G~Gs~--~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~~ 253 (368)
T PRK08649 176 PLNLKEFIYELDVPVIVGGCVTYTTALHLMRTGAAGVLVGIGPGAA--CTSRGVLGIGVPMATAIADVAAARRDYLDETG 253 (368)
T ss_pred HHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCcC--CCCcccCCCCcCHHHHHHHHHHHHHHhhhhhc
Confidence 344666665544 344448999999998888999999987 32211 11111111 23322222222222211
Q ss_pred -cCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEe
Q 012478 149 -VSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIIL 184 (462)
Q Consensus 149 -~~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~I 184 (462)
.++|||+|.-- .+..++. |. +.+||++|.+
T Consensus 254 ~~~vpVIAdGGI--~~~~dia---kA-lalGAd~Vm~ 284 (368)
T PRK08649 254 GRYVHVIADGGI--GTSGDIA---KA-IACGADAVML 284 (368)
T ss_pred CCCCeEEEeCCC--CCHHHHH---HH-HHcCCCeecc
Confidence 16999999543 3443444 33 3589999998
No 354
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=88.38 E-value=20 Score=35.34 Aligned_cols=143 Identities=20% Similarity=0.164 Sum_probs=86.7
Q ss_pred CCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEE
Q 012478 150 SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVA 229 (462)
Q Consensus 150 ~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiA 229 (462)
.+=.+++.|.|.....+-..-++..++.||.-|-+==...--++|+ .++..+-|++++++.. +.-+.||-
T Consensus 59 ~v~tVigFP~G~~~~~~K~~e~~~Ai~~GA~EiD~Vin~~~~~~g~--------~~~v~~ei~~v~~~~~--~~~lKvIl 128 (221)
T PRK00507 59 KVCTVIGFPLGANTTAVKAFEAKDAIANGADEIDMVINIGALKSGD--------WDAVEADIRAVVEAAG--GAVLKVII 128 (221)
T ss_pred eEEEEecccCCCChHHHHHHHHHHHHHcCCceEeeeccHHHhcCCC--------HHHHHHHHHHHHHhcC--CceEEEEe
Confidence 3456779999976555555556788889999886432221122333 4667777777777642 33466665
Q ss_pred ecchhhcccHHHHHHHHHHhHhcCCcEEEe-----cCCCCHHHHHHHHHhCCC-CceeeeeeecCCCCCCCCHHHHHhcC
Q 012478 230 RTDSRQALSLEESLRRSRAFADAGADVLFI-----DALASKEEMKAFCEISPL-VPKMANMLEGGGKTPILNPLELEELG 303 (462)
Q Consensus 230 RTDA~~~~gldeAI~RakAy~eAGAD~Ifi-----e~~~s~eei~~i~~~v~~-vP~~~N~l~~~g~tP~ls~~eL~~lG 303 (462)
-|..+. -++..+-++...++|||.|-. .+-.+.+.++.+.+.++. +++ -..||-.-.-...++-++|
T Consensus 129 Et~~L~---~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~~~~~~~~I----KasGGIrt~~~a~~~i~aG 201 (221)
T PRK00507 129 ETCLLT---DEEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRETVGPRVGV----KASGGIRTLEDALAMIEAG 201 (221)
T ss_pred ecCcCC---HHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhCCCceE----EeeCCcCCHHHHHHHHHcC
Confidence 555543 244455567788999995543 223578888888887652 222 2223322122456777888
Q ss_pred CCEEec
Q 012478 304 FKLVAY 309 (462)
Q Consensus 304 v~~V~y 309 (462)
..|+-.
T Consensus 202 A~riGt 207 (221)
T PRK00507 202 ATRLGT 207 (221)
T ss_pred cceEcc
Confidence 888744
No 355
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=88.35 E-value=13 Score=38.82 Aligned_cols=83 Identities=23% Similarity=0.251 Sum_probs=57.8
Q ss_pred cCChH-HHHHHHHhCCcEEEec-cHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHH
Q 012478 96 CFDAL-SAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKG 173 (462)
Q Consensus 96 ayDal-SArl~e~aGfdaI~vS-G~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~ 173 (462)
.||.- -++.++..+.+++-+. .... -+..|. +.-.++.+++.++.|++.+++||++=. .|+|.. .+.++.
T Consensus 134 ~~~~~~~~~~~~~~~adal~l~l~~~q---e~~~p~-g~~~f~~~le~i~~i~~~~~vPVivK~-~g~g~s---~~~a~~ 205 (352)
T PRK05437 134 GYGVEEAQRAVEMIEADALQIHLNPLQ---ELVQPE-GDRDFRGWLDNIAEIVSALPVPVIVKE-VGFGIS---KETAKR 205 (352)
T ss_pred CCCHHHHHHHHHhcCCCcEEEeCccch---hhcCCC-CcccHHHHHHHHHHHHHhhCCCEEEEe-CCCCCc---HHHHHH
Confidence 45433 4466777888888876 2211 123333 334578888999999999999999864 366644 577788
Q ss_pred HHHhCccEEEeCC
Q 012478 174 YIKAGFAGIILED 186 (462)
Q Consensus 174 l~~AGaaGI~IED 186 (462)
++++|+++|.+-.
T Consensus 206 l~~~Gvd~I~Vsg 218 (352)
T PRK05437 206 LADAGVKAIDVAG 218 (352)
T ss_pred HHHcCCCEEEECC
Confidence 9999999999944
No 356
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=88.28 E-value=8.4 Score=40.35 Aligned_cols=200 Identities=19% Similarity=0.173 Sum_probs=111.6
Q ss_pred HHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhc-CCcEEEeCCCCCCCHHHHHHHHHHHHHhCcc
Q 012478 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV-SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFA 180 (462)
Q Consensus 102 Arl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~-~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaa 180 (462)
|+.+.++|++.|=++.... +-+| .+.++.|.+.. +..|.+=+. . ..+.++...++|+.
T Consensus 28 a~~L~~~Gv~~IEvG~p~~-------------~~~~-~e~i~~i~~~~~~~~v~~~~r---~----~~~di~~a~~~g~~ 86 (363)
T TIGR02090 28 ARKLDELGVDVIEAGFPIA-------------SEGE-FEAIKKISQEGLNAEICSLAR---A----LKKDIDKAIDCGVD 86 (363)
T ss_pred HHHHHHcCCCEEEEeCCCC-------------ChHH-HHHHHHHHhcCCCcEEEEEcc---c----CHHHHHHHHHcCcC
Confidence 4567788999988753221 1112 24455555432 233443222 1 23446777889999
Q ss_pred EEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEec
Q 012478 181 GIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFID 260 (462)
Q Consensus 181 GI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie 260 (462)
.|+|-..+++- |...+-=.+.++.++++..+++..++.|-.+.+.. .|+. ....+..++-++++.++|||.|.+.
T Consensus 87 ~i~i~~~~Sd~---~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~-eda~-r~~~~~l~~~~~~~~~~g~~~i~l~ 161 (363)
T TIGR02090 87 SIHTFIATSPI---HLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSA-EDAT-RTDIDFLIKVFKRAEEAGADRINIA 161 (363)
T ss_pred EEEEEEcCCHH---HHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEE-eecC-CCCHHHHHHHHHHHHhCCCCEEEEe
Confidence 99997765432 21111113567777877777766665553333322 3443 3457888999999999999999874
Q ss_pred ---CCCCHHHHHHHHHhCCC-CceeeeeeecCCCCCCCC---HHHHHhcCCCEEeccchHH--HHHHHHHHHHHHHHH
Q 012478 261 ---ALASKEEMKAFCEISPL-VPKMANMLEGGGKTPILN---PLELEELGFKLVAYPLSLI--GVSVRAMQDALTAIK 329 (462)
Q Consensus 261 ---~~~s~eei~~i~~~v~~-vP~~~N~l~~~g~tP~ls---~~eL~~lGv~~V~yp~~ll--~aa~~Am~~~l~~l~ 329 (462)
|.-+++++.++.+.+.. .|.++.+ ... .+..+. .-.--+.|+.+|--....+ ++...++++.+..|.
T Consensus 162 DT~G~~~P~~v~~li~~l~~~~~~~l~~-H~H-nd~GlA~AN~laA~~aGa~~vd~s~~GlGeraGN~~lE~vv~~L~ 237 (363)
T TIGR02090 162 DTVGVLTPQKMEELIKKLKENVKLPISV-HCH-NDFGLATANSIAGVKAGAEQVHVTVNGIGERAGNAALEEVVMALK 237 (363)
T ss_pred CCCCccCHHHHHHHHHHHhcccCceEEE-Eec-CCCChHHHHHHHHHHCCCCEEEEEeeccccccccccHHHHHHHHH
Confidence 34567888877766432 2333222 111 111221 2233356887776555443 334445555555554
No 357
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=88.20 E-value=32 Score=35.10 Aligned_cols=128 Identities=16% Similarity=0.128 Sum_probs=85.9
Q ss_pred CCCCHHHHHHHHHHHHHhC-------ccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecc
Q 012478 160 GYGNAMNVKRTVKGYIKAG-------FAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTD 232 (462)
Q Consensus 160 GyG~~~nv~rtVk~l~~AG-------aaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTD 232 (462)
|--++..+.++.+.-.+++ -.=||||=- .+.+.|.|- ..+.++|+..-.+ .+|.|.--|-
T Consensus 79 Gc~tA~EAv~~A~laRe~~~~~~~~~~~wIKLEVi--------~D~~~LlPD--~~etl~Aae~Lv~---eGF~VlPY~~ 145 (267)
T CHL00162 79 GCQTAEEAIRMAFLGRELAKQLGQEDNNFVKLEVI--------SDPKYLLPD--PIGTLKAAEFLVK---KGFTVLPYIN 145 (267)
T ss_pred CCCCHHHHHHHHHHHHHHhccccccCCCeEEEEEe--------CCCcccCCC--hHHHHHHHHHHHH---CCCEEeecCC
Confidence 4336666777766655654 667777742 233456663 3678888876665 4798887754
Q ss_pred hhhcccHHHHHHHHHHhHhcCCcEEEecC--------CCCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcCC
Q 012478 233 SRQALSLEESLRRSRAFADAGADVLFIDA--------LASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGF 304 (462)
Q Consensus 233 A~~~~gldeAI~RakAy~eAGAD~Ifie~--------~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv 304 (462)
.. .--|++++++||-+|++.+ +.++..++.+.+..+ +|+++. .|=.+| -+..+-.++|+
T Consensus 146 ~D--------~v~a~rLed~Gc~aVMPlgsPIGSg~Gl~n~~~l~~i~e~~~-vpVivd---AGIgt~-sDa~~AmElGa 212 (267)
T CHL00162 146 AD--------PMLAKHLEDIGCATVMPLGSPIGSGQGLQNLLNLQIIIENAK-IPVIID---AGIGTP-SEASQAMELGA 212 (267)
T ss_pred CC--------HHHHHHHHHcCCeEEeeccCcccCCCCCCCHHHHHHHHHcCC-CcEEEe---CCcCCH-HHHHHHHHcCC
Confidence 32 2259999999999999874 568889999998765 676543 221233 24577889999
Q ss_pred CEEeccchH
Q 012478 305 KLVAYPLSL 313 (462)
Q Consensus 305 ~~V~yp~~l 313 (462)
.-|......
T Consensus 213 DgVL~nSaI 221 (267)
T CHL00162 213 SGVLLNTAV 221 (267)
T ss_pred CEEeeccee
Confidence 988776553
No 358
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=88.19 E-value=2.7 Score=43.12 Aligned_cols=65 Identities=15% Similarity=0.184 Sum_probs=44.1
Q ss_pred HHHHhHhcCCcEEEecCCCCHHHHHHHHHhCCCC-ceeeeeeecCCCCCCCCHHHHHhcCCCEEeccch
Q 012478 245 RSRAFADAGADVLFIDALASKEEMKAFCEISPLV-PKMANMLEGGGKTPILNPLELEELGFKLVAYPLS 312 (462)
Q Consensus 245 RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~v-P~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~ 312 (462)
.+..+.++|||+|+++-.. ++++++.++.+... |.. -+-..||-++ -+..++.+.|++.++.+..
T Consensus 211 ea~eal~~gaDiI~LDnm~-~e~vk~av~~~~~~~~~v-~ieaSGGI~~-~ni~~yA~tGvD~Is~gal 276 (289)
T PRK07896 211 QLDEVLAEGAELVLLDNFP-VWQTQEAVQRRDARAPTV-LLESSGGLTL-DTAAAYAETGVDYLAVGAL 276 (289)
T ss_pred HHHHHHHcCCCEEEeCCCC-HHHHHHHHHHHhccCCCE-EEEEECCCCH-HHHHHHHhcCCCEEEeChh
Confidence 4555678999999999875 68898888653211 222 1222334332 4679999999999998763
No 359
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=88.15 E-value=22 Score=35.32 Aligned_cols=144 Identities=17% Similarity=0.229 Sum_probs=87.2
Q ss_pred HHHHHHHhhc-CCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHH
Q 012478 140 DQGQLITQAV-SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDAR 218 (462)
Q Consensus 140 ~~~~~I~ra~-~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar 218 (462)
..++.|+... +.+|+||+-+-=.+. --+++..++||+-+.+=.- .| ...|+.+.+.+
T Consensus 45 ~aV~~lr~~~pd~~IvAD~Kt~D~G~----~e~~ma~~aGAd~~tV~g~------A~------------~~TI~~~i~~A 102 (217)
T COG0269 45 RAVRALRELFPDKIIVADLKTADAGA----IEARMAFEAGADWVTVLGA------AD------------DATIKKAIKVA 102 (217)
T ss_pred HHHHHHHHHCCCCeEEeeeeecchhH----HHHHHHHHcCCCEEEEEec------CC------------HHHHHHHHHHH
Confidence 4556666654 599999987642221 2246777899999988543 23 34666666666
Q ss_pred HhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEecCCCC---------HHHHHHHHHhCCCCceeeeeeecCC
Q 012478 219 KESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALAS---------KEEMKAFCEISPLVPKMANMLEGGG 289 (462)
Q Consensus 219 ~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~~~s---------~eei~~i~~~v~~vP~~~N~l~~~g 289 (462)
++.|.. ++. |-.....++ +|++-+.++|.|.+++|--.+ .+.+..+.+..+.. ..+- +. ||
T Consensus 103 ~~~~~~--v~i--Dl~~~~~~~---~~~~~l~~~gvd~~~~H~g~D~q~~G~~~~~~~l~~ik~~~~~g-~~vA-Va-GG 172 (217)
T COG0269 103 KEYGKE--VQI--DLIGVWDPE---QRAKWLKELGVDQVILHRGRDAQAAGKSWGEDDLEKIKKLSDLG-AKVA-VA-GG 172 (217)
T ss_pred HHcCCe--EEE--EeecCCCHH---HHHHHHHHhCCCEEEEEecccHhhcCCCccHHHHHHHHHhhccC-ceEE-Ee-cC
Confidence 665422 221 333344444 466677779999999884322 34555665544310 1222 22 35
Q ss_pred CCCCCCHHHHHhcCCCEEeccchHHHH
Q 012478 290 KTPILNPLELEELGFKLVAYPLSLIGV 316 (462)
Q Consensus 290 ~tP~ls~~eL~~lGv~~V~yp~~ll~a 316 (462)
-+| =+..++..+|++.++.|.....+
T Consensus 173 I~~-~~i~~~~~~~~~ivIvGraIt~a 198 (217)
T COG0269 173 ITP-EDIPLFKGIGADIVIVGRAITGA 198 (217)
T ss_pred CCH-HHHHHHhcCCCCEEEECchhcCC
Confidence 444 25678889999999998876544
No 360
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=88.09 E-value=13 Score=44.92 Aligned_cols=204 Identities=20% Similarity=0.185 Sum_probs=114.4
Q ss_pred EEEeCCC--CCCC-HHHHH-HHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEE
Q 012478 153 VIGDGDN--GYGN-AMNVK-RTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIV 228 (462)
Q Consensus 153 VIaD~Dt--GyG~-~~nv~-rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIi 228 (462)
.+.=+-+ ||-+ +.||. ..+++..+.|++-+-|=|.. =+.+-|..-|++++++... ...- +
T Consensus 609 ml~Rg~n~vgy~~ypd~vv~~f~~~~~~~GidifrifD~l-------------N~~~n~~~~~~~~~~~g~~--~~~~-i 672 (1143)
T TIGR01235 609 MLLRGANGVGYTNYPDNVVKYFVKQAAQGGIDIFRVFDSL-------------NWVENMRVGMDAVAEAGKV--VEAA-I 672 (1143)
T ss_pred eeeccccccCccCCCHHHHHHHHHHHHHcCCCEEEECccC-------------cCHHHHHHHHHHHHHcCCE--EEEE-E
Confidence 4455555 5665 56655 45889999999999998864 2334444444444444221 0111 2
Q ss_pred Eec----ch-hhcccHHHHHHHHHHhHhcCCcEEEec---CCCCHHHHHHHHHhCCC-CceeeeeeecCCCCCCCCH---
Q 012478 229 ART----DS-RQALSLEESLRRSRAFADAGADVLFID---ALASKEEMKAFCEISPL-VPKMANMLEGGGKTPILNP--- 296 (462)
Q Consensus 229 ART----DA-~~~~gldeAI~RakAy~eAGAD~Ifie---~~~s~eei~~i~~~v~~-vP~~~N~l~~~g~tP~ls~--- 296 (462)
.-| |. ...+.++--++-++.+.++|||.|.+- |+-++.++.++++.+.. +.+++.+ +.+ .+..+..
T Consensus 673 ~yt~~~~d~~~~~~~l~y~~~~ak~l~~~Gad~I~ikDt~Gll~P~~~~~Lv~~lk~~~~~pi~~-H~H-dt~Gla~an~ 750 (1143)
T TIGR01235 673 CYTGDILDPARPKYDLKYYTNLAVELEKAGAHILGIKDMAGLLKPAAAKLLIKALREKTDLPIHF-HTH-DTSGIAVASM 750 (1143)
T ss_pred EEeccCCCcCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCCcCHHHHHHHHHHHHHhcCCeEEE-EEC-CCCCcHHHHH
Confidence 233 11 224567888889999999999999985 45566777766654321 1233332 221 2333433
Q ss_pred HHHHhcCCCEEeccchHHH--HHHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCcccHHHHHHhhccccccccccccc
Q 012478 297 LELEELGFKLVAYPLSLIG--VSVRAMQDALTAIKGGRIPSPGSMPSFQEIKETLGFNTYYEEEKRYATSMRRLSSENVT 374 (462)
Q Consensus 297 ~eL~~lGv~~V~yp~~ll~--aa~~Am~~~l~~l~~g~~~~~~~~~s~~e~~~lvg~~~~~~~e~~y~~~~~~~~~~~~~ 374 (462)
-.--++|++.|-.....+. +...++...+..|++.+.. ..+.++.+.++-. .|.+....|...+..+. ...
T Consensus 751 laA~eaGad~vD~ai~gl~G~ts~p~~e~~v~~L~~~~~~---tgidl~~l~~is~--~~~~vr~~y~~~~~~~~--~~~ 823 (1143)
T TIGR01235 751 LAAVEAGVDVVDVAVDSMSGLTSQPSLGAIVAALEGSERD---PGLNVAWIRELSA--YWEAVRNLYAAFESDLK--GPA 823 (1143)
T ss_pred HHHHHhCCCEEEecchhhcCCCCCHhHHHHHHHHHhCCCC---CCcCHHHHHHHHH--HHHHHHHHhhcCCCCCc--CCC
Confidence 3345789999877666553 2334566666667653222 1234444444332 24445566666655542 334
Q ss_pred CCCCCCC
Q 012478 375 SNSYDTQ 381 (462)
Q Consensus 375 ~~~~~~~ 381 (462)
..+|..|
T Consensus 824 ~~v~~~~ 830 (1143)
T TIGR01235 824 SEVYLHE 830 (1143)
T ss_pred cCeEEec
Confidence 4555554
No 361
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=88.06 E-value=2.3 Score=42.34 Aligned_cols=109 Identities=17% Similarity=0.188 Sum_probs=68.5
Q ss_pred CCCCCCCCcccCHHHHHHHHHHHHHHHHh-hCCCeEEEEecch------hhccc---H-HHHHHHHHHhHhcCCcEEEec
Q 012478 192 GCGHTRGRKVVSREEAVMRIKAAVDARKE-SGSDIVIVARTDS------RQALS---L-EESLRRSRAFADAGADVLFID 260 (462)
Q Consensus 192 rCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~-~g~d~vIiARTDA------~~~~g---l-deAI~RakAy~eAGAD~Ifie 260 (462)
+-|-++|----++..+..||..++.++.. .....+++---|- ..... . +..++-|+.++++|||+|.+.
T Consensus 3 ~iGilGGMgpeST~~yyr~ine~~~~~~g~~h~~~i~~~s~~f~~~~~~q~~~~w~~~~~~L~~~a~~Le~~GAd~i~l~ 82 (230)
T COG1794 3 TIGILGGMGPESTAPYYRKINEAVRAKLGGLHSAELLLYSVDFPEIETLQRAGEWDEAGEILIDAAKKLERAGADFIVLP 82 (230)
T ss_pred eeEeccCCChHHHHHHHHHHHHHHHHHhCCcCcchhheecCCcccHHHHHccCccccHHHHHHHHHHHHHhcCCCEEEEe
Confidence 33445554455677888898888877652 1122233322222 11111 1 335667899999999999998
Q ss_pred CCCCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcCCCEEec
Q 012478 261 ALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAY 309 (462)
Q Consensus 261 ~~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~y 309 (462)
+=+-...+.++-+.++ +|+ +++++. +.+++...|+++|-.
T Consensus 83 ~NT~H~~~d~iq~~~~-iPl-lhIida-------Ta~~ik~~g~kkvgL 122 (230)
T COG1794 83 TNTMHKVADDIQKAVG-IPL-LHIIDA-------TAKAIKAAGAKKVGL 122 (230)
T ss_pred CCcHHHHHHHHHHhcC-CCe-ehHHHH-------HHHHHHhcCCceeEE
Confidence 7544445555555654 674 566653 789999999999865
No 362
>cd03322 rpsA The starvation sensing protein RpsA from E.coli and its homologs are lactonizing enzymes whose putative targets are homoserine lactone (HSL)-derivative. They are part of the mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subfamily share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and catalytic residues, a partially conserved Lys-X-Lys motif and a conserved histidine-aspartate dyad.
Probab=88.00 E-value=17 Score=37.85 Aligned_cols=91 Identities=11% Similarity=0.224 Sum_probs=66.3
Q ss_pred CHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHH
Q 012478 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (462)
Q Consensus 163 ~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeA 242 (462)
++..+...++++.+.|...+||. + +++|++++++. |+++.+ +.|+-....+++|
T Consensus 126 ~~~~~~~~a~~~~~~Gf~~~KiK---------------v------~~~v~avre~~---G~~~~l--~vDaN~~w~~~~A 179 (361)
T cd03322 126 DIPELLEAVERHLAQGYRAIRVQ---------------L------PKLFEAVREKF---GFEFHL--LHDVHHRLTPNQA 179 (361)
T ss_pred CHHHHHHHHHHHHHcCCCeEeeC---------------H------HHHHHHHHhcc---CCCceE--EEECCCCCCHHHH
Confidence 45566677788888899999981 1 56777777653 566655 4588777889999
Q ss_pred HHHHHHhHhcCCcEEEecCC---CCHHHHHHHHHhCCCCceee
Q 012478 243 LRRSRAFADAGADVLFIDAL---ASKEEMKAFCEISPLVPKMA 282 (462)
Q Consensus 243 I~RakAy~eAGAD~Ifie~~---~s~eei~~i~~~v~~vP~~~ 282 (462)
++.++++.+. +..|+|-+ .+.+.++++.+..+ +|+..
T Consensus 180 ~~~~~~l~~~--~l~~iEeP~~~~d~~~~~~L~~~~~-~pia~ 219 (361)
T cd03322 180 ARFGKDVEPY--RLFWMEDPTPAENQEAFRLIRQHTA-TPLAV 219 (361)
T ss_pred HHHHHHhhhc--CCCEEECCCCcccHHHHHHHHhcCC-CCEEe
Confidence 9999999876 56688865 35577888888765 67654
No 363
>PRK02714 O-succinylbenzoate synthase; Provisional
Probab=87.99 E-value=10 Score=38.87 Aligned_cols=111 Identities=15% Similarity=0.150 Sum_probs=77.0
Q ss_pred CCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEE
Q 012478 150 SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVA 229 (462)
Q Consensus 150 ~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiA 229 (462)
.+|+.+=++++ ....+.++++.+.|...+||-= |. -+.++-+++|++++++. |++..+
T Consensus 109 ~~~~~~~i~~~----~~~~~~a~~~~~~G~~~~KvKv-------G~------~~~~~d~~~v~air~~~---g~~~~l-- 166 (320)
T PRK02714 109 PLSYSALLPAG----EAALQQWQTLWQQGYRTFKWKI-------GV------DPLEQELKIFEQLLERL---PAGAKL-- 166 (320)
T ss_pred CCceeeecCCC----HHHHHHHHHHHHcCCCEEEEEE-------CC------CChHHHHHHHHHHHHhc---CCCCEE--
Confidence 35555544332 4566677788888999999821 21 13455688888887664 556655
Q ss_pred ecchhhcccHHHHHHHHHHhHhc-CCcEEEecCCC---CHHHHHHHHHhCCCCceeee
Q 012478 230 RTDSRQALSLEESLRRSRAFADA-GADVLFIDALA---SKEEMKAFCEISPLVPKMAN 283 (462)
Q Consensus 230 RTDA~~~~gldeAI~RakAy~eA-GAD~Ifie~~~---s~eei~~i~~~v~~vP~~~N 283 (462)
|.|+-.....++|++-++.+.+. +-+..|+|-+- +.+.++++.+..+ +|+.+.
T Consensus 167 ~vDaN~~w~~~~A~~~~~~l~~l~~~~i~~iEqP~~~~~~~~~~~l~~~~~-~Pia~D 223 (320)
T PRK02714 167 RLDANGGLSLEEAKRWLQLCDRRLSGKIEFIEQPLPPDQFDEMLQLSQDYQ-TPIALD 223 (320)
T ss_pred EEECCCCCCHHHHHHHHHHHhhccCCCccEEECCCCcccHHHHHHHHHhCC-CCEEEC
Confidence 67887778899999999998873 56788998753 5678888888765 576543
No 364
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=87.96 E-value=2.7 Score=45.63 Aligned_cols=88 Identities=17% Similarity=0.085 Sum_probs=56.2
Q ss_pred CceEecccCChHHHHHHHHhCCcEEEeccHHHHhhhccCC--CCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHH
Q 012478 89 GVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALP--DTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMN 166 (462)
Q Consensus 89 ~~iv~p~ayDalSArl~e~aGfdaI~vSG~avSas~lG~P--D~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~n 166 (462)
-++++=++-+.-.|+.+.++|+|+|-++...-+ ..+-. +.-.++.-+.+..++..++..++|||+|. |.-++.+
T Consensus 270 ~~vi~g~v~t~e~a~~l~~aGad~i~vg~g~gs--~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~viadG--Gi~~~~d 345 (486)
T PRK05567 270 VQIIAGNVATAEAARALIEAGADAVKVGIGPGS--ICTTRIVAGVGVPQITAIADAAEAAKKYGIPVIADG--GIRYSGD 345 (486)
T ss_pred CCEEEeccCCHHHHHHHHHcCCCEEEECCCCCc--cccceeecCCCcCHHHHHHHHHHHhccCCCeEEEcC--CCCCHHH
Confidence 367788999999999999999999987621111 11111 11113334445555555555679999983 3445555
Q ss_pred HHHHHHHHHHhCccEEEe
Q 012478 167 VKRTVKGYIKAGFAGIIL 184 (462)
Q Consensus 167 v~rtVk~l~~AGaaGI~I 184 (462)
+. |.+ .+||++|.+
T Consensus 346 i~---kAl-a~GA~~v~~ 359 (486)
T PRK05567 346 IA---KAL-AAGASAVML 359 (486)
T ss_pred HH---HHH-HhCCCEEEE
Confidence 55 333 579999998
No 365
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=87.92 E-value=4.3 Score=43.03 Aligned_cols=94 Identities=23% Similarity=0.318 Sum_probs=54.5
Q ss_pred HHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHh
Q 012478 141 QGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKE 220 (462)
Q Consensus 141 ~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~ 220 (462)
.++.|++.+++||++= |-+. .+.++++.++|++||.+-. |- |+++....-..+-|..++++.
T Consensus 219 ~i~~l~~~~~~PvivK---Gv~~----~eda~~a~~~Gvd~I~VS~--------HG-Grq~~~~~a~~~~L~ei~~av-- 280 (367)
T TIGR02708 219 DIEEIAGYSGLPVYVK---GPQC----PEDADRALKAGASGIWVTN--------HG-GRQLDGGPAAFDSLQEVAEAV-- 280 (367)
T ss_pred HHHHHHHhcCCCEEEe---CCCC----HHHHHHHHHcCcCEEEECC--------cC-ccCCCCCCcHHHHHHHHHHHh--
Confidence 4566777789999998 4333 4556778899999998844 42 344321111122333333332
Q ss_pred hCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEec
Q 012478 221 SGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFID 260 (462)
Q Consensus 221 ~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie 260 (462)
+.++-|++--+-+.. .+=+|+++ .|||++++-
T Consensus 281 -~~~i~vi~dGGIr~g------~Dv~KaLa-lGAd~V~ig 312 (367)
T TIGR02708 281 -DKRVPIVFDSGVRRG------QHVFKALA-SGADLVALG 312 (367)
T ss_pred -CCCCcEEeeCCcCCH------HHHHHHHH-cCCCEEEEc
Confidence 334666665544322 22344444 999999984
No 366
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=87.91 E-value=2.9 Score=44.27 Aligned_cols=97 Identities=11% Similarity=0.053 Sum_probs=54.8
Q ss_pred HHHHHHhCCC-ceEecccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHH----Hhhc---CC
Q 012478 80 SLRQILELPG-VHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLI----TQAV---SI 151 (462)
Q Consensus 80 ~LR~ll~~~~-~iv~p~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I----~ra~---~i 151 (462)
.|.+++++-+ ++++=++.+.-.|+-+.++|+|+|..+..+.. ..-+ ...-.+++-+.+..+... .+.+ .+
T Consensus 179 ~l~~~i~~~~IPVI~G~V~t~e~A~~~~~aGaDgV~~G~gg~~-~~~~-~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~v 256 (369)
T TIGR01304 179 NLKEFIGELDVPVIAGGVNDYTTALHLMRTGAAGVIVGPGGAN-TTRL-VLGIEVPMATAIADVAAARRDYLDETGGRYV 256 (369)
T ss_pred HHHHHHHHCCCCEEEeCCCCHHHHHHHHHcCCCEEEECCCCCc-cccc-ccCCCCCHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 4555554433 44444899999999888899999986622211 1111 111224444333333322 2223 39
Q ss_pred cEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEe
Q 012478 152 PVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIIL 184 (462)
Q Consensus 152 PVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~I 184 (462)
|||+|.- ..+..++. +.+.+||++|.+
T Consensus 257 pVIAdGG--I~tg~di~----kAlAlGAdaV~i 283 (369)
T TIGR01304 257 HVIADGG--IETSGDLV----KAIACGADAVVL 283 (369)
T ss_pred eEEEeCC--CCCHHHHH----HHHHcCCCEeee
Confidence 9999853 44544454 334589999988
No 367
>PF00490 ALAD: Delta-aminolevulinic acid dehydratase; InterPro: IPR001731 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents porphobilinogen (PBG) synthase (PBGS, or 5-aminoaevulinic acid dehydratase, or ALAD, 4.2.1.24 from EC), which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses a Knorr-type condensation reaction between two molecules of ALA to generate porphobilinogen, the pyrrolic building block used in later steps []. The structure of the enzyme is based on a TIM barrel topology made up of eight identical subunits, where each subunit binds to a metal ion that is essential for activity, usually zinc (in yeast, mammals and certain bacteria) or magnesium (in plants and other bacteria). A lysine has been implicated in the catalytic mechanism []. The lack of PBGS enzyme causes a rare porphyric disorder known as ALAD porphyria, which appears to involve conformational changes in the enzyme [.; GO: 0004655 porphobilinogen synthase activity, 0046872 metal ion binding, 0033014 tetrapyrrole biosynthetic process; PDB: 2C1H_A 1W1Z_A 1GZG_B 1W5O_B 1W5Q_B 2C18_A 1B4K_A 2C19_B 1W56_B 2C13_B ....
Probab=87.87 E-value=8.4 Score=40.25 Aligned_cols=170 Identities=22% Similarity=0.252 Sum_probs=97.8
Q ss_pred EecccCChHHHHH------HHHhCCcEEEeccHHHHhhhccCCCC-CCCCHH---HHHHHHHHHHhhc-CCcEEEeC---
Q 012478 92 QGPACFDALSAKL------VEKSGFSFCFTSGFSISAARLALPDT-GFISYG---EMVDQGQLITQAV-SIPVIGDG--- 157 (462)
Q Consensus 92 v~p~ayDalSArl------~e~aGfdaI~vSG~avSas~lG~PD~-g~vsl~---Eml~~~~~I~ra~-~iPVIaD~--- 157 (462)
.|||.|=.---.+ +.+.|.+++.+=|.- . --..|. +.-.++ =+...++.|.... ++-||+|.
T Consensus 47 smPg~~r~sid~l~~~v~~~~~~GI~~v~lFgvi-~---~~~Kd~~gs~a~~~~g~v~~air~iK~~~pdl~vi~Dvclc 122 (324)
T PF00490_consen 47 SMPGVYRYSIDSLVKEVEEAVDLGIRAVILFGVI-D---PSKKDEEGSEAYNPDGLVQRAIRAIKKAFPDLLVITDVCLC 122 (324)
T ss_dssp TSTTEEEEEHHHHHHHHHHHHHTT--EEEEEEE--S---CSC-BSS-GGGGSTTSHHHHHHHHHHHHSTTSEEEEEE-ST
T ss_pred CCCCeeeeCHHHHHHHHHHHHHCCCCEEEEEeeC-C---cccCCcchhcccCCCChHHHHHHHHHHhCCCcEEEEecccc
Confidence 4666654333333 335699988875531 0 011221 222222 2445566677666 47788884
Q ss_pred ---C----------CCCC-CHH---HHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHh
Q 012478 158 ---D----------NGYG-NAM---NVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKE 220 (462)
Q Consensus 158 ---D----------tGyG-~~~---nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~ 220 (462)
+ +|+= |.. ...+..-.+.+|||+.|-=-|- |+| ||.|++++.++
T Consensus 123 ~YT~hGHcGil~~~~g~idND~Tl~~Lak~Al~~A~AGADiVAPSdM--------MDG-----------rV~aIR~aLd~ 183 (324)
T PF00490_consen 123 EYTSHGHCGILDDEDGEIDNDETLERLAKQALSHAEAGADIVAPSDM--------MDG-----------RVGAIREALDE 183 (324)
T ss_dssp TTBTSSSSSEB-CTTSSBEHHHHHHHHHHHHHHHHHHT-SEEEE-S----------TT-----------HHHHHHHHHHH
T ss_pred cccCCCceEEEECCCCeEecHHHHHHHHHHHHHHHHhCCCeeccccc--------cCC-----------HHHHHHHHHHh
Confidence 2 2322 222 3344455666899998877664 333 66666666665
Q ss_pred hC-CCeEEEEecchhhc--------------------------ccHHHHHHHHHHhHhcCCcEEEe-cCCCCHHHHHHHH
Q 012478 221 SG-SDIVIVARTDSRQA--------------------------LSLEESLRRSRAFADAGADVLFI-DALASKEEMKAFC 272 (462)
Q Consensus 221 ~g-~d~vIiARTDA~~~--------------------------~gldeAI~RakAy~eAGAD~Ifi-e~~~s~eei~~i~ 272 (462)
.| .+.-|++-+--++. ..-+|||+.+..=.+-|||+|+| |+++..+.++++.
T Consensus 184 ~g~~~v~ImSYsaKyaS~fYGPFRdAa~Sap~fgDrktYQmdp~N~~EAlre~~~D~~EGAD~lMVKPal~YLDIi~~~k 263 (324)
T PF00490_consen 184 AGFSDVPIMSYSAKYASAFYGPFRDAAGSAPKFGDRKTYQMDPANRREALREAELDIEEGADILMVKPALPYLDIIRRVK 263 (324)
T ss_dssp TTCTTSEEEEEEEEB-SSTGHHHHHHHT-HHSSSTSTTTSB-TT-HHHHHHHHHHHHHTT-SEEEEESSGGGHHHHHHHH
T ss_pred CCCCCccEEechHHHhhhhhHhHHHHhcCCccccCcccccCCCccHHHHHHHhhhhHhhCCCEEEeecchhHHHHHHHHH
Confidence 44 36778876543210 13689999999999999999999 8899999999999
Q ss_pred HhCCCCceeeeee
Q 012478 273 EISPLVPKMANML 285 (462)
Q Consensus 273 ~~v~~vP~~~N~l 285 (462)
+.+. +|+.+=.+
T Consensus 264 ~~~~-~P~~aYqV 275 (324)
T PF00490_consen 264 ERFD-LPVAAYQV 275 (324)
T ss_dssp HHCT-S-EEEEET
T ss_pred HhcC-CCEEEEEe
Confidence 9885 67654333
No 368
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=87.85 E-value=0.83 Score=47.54 Aligned_cols=67 Identities=19% Similarity=0.186 Sum_probs=48.3
Q ss_pred HHHHHHHHHhHhcCC--cEEEecCC-----CCHHHHHHHHHhCCCCceee-eeeecCCCCCCCCHHHHHhcCCCEEeccc
Q 012478 240 EESLRRSRAFADAGA--DVLFIDAL-----ASKEEMKAFCEISPLVPKMA-NMLEGGGKTPILNPLELEELGFKLVAYPL 311 (462)
Q Consensus 240 deAI~RakAy~eAGA--D~Ifie~~-----~s~eei~~i~~~v~~vP~~~-N~l~~~g~tP~ls~~eL~~lGv~~V~yp~ 311 (462)
++..+|+.++.+||+ |+|.+++- .-.+.++++.+.+|.+|+++ |+. ++ -....|.++|++.+.++.
T Consensus 96 ~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~-----t~-e~a~~l~~aGad~i~vg~ 169 (326)
T PRK05458 96 DDEYDFVDQLAAEGLTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVG-----TP-EAVRELENAGADATKVGI 169 (326)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecC-----CH-HHHHHHHHcCcCEEEECC
Confidence 456789999999965 99999443 33456778878887777765 442 21 256889999999988764
Q ss_pred h
Q 012478 312 S 312 (462)
Q Consensus 312 ~ 312 (462)
+
T Consensus 170 ~ 170 (326)
T PRK05458 170 G 170 (326)
T ss_pred C
Confidence 4
No 369
>PF02219 MTHFR: Methylenetetrahydrofolate reductase; InterPro: IPR003171 This family includes the 5,10-methylenetetrahydrofolate reductase 1.7.99.5 from EC from bacteria and methylenetetrahydrofolate reductase 1.5.1.20 from EC from eukaryotes. The structure for this domain is known [] to be a TIM barrel.; GO: 0004489 methylenetetrahydrofolate reductase (NADPH) activity, 0006555 methionine metabolic process, 0055114 oxidation-reduction process; PDB: 3IJD_B 1B5T_B 3FSU_C 1ZPT_C 2FMO_B 3FST_C 2FMN_C 1ZP3_A 1ZP4_B 1ZRQ_B ....
Probab=87.84 E-value=32 Score=34.61 Aligned_cols=202 Identities=19% Similarity=0.196 Sum_probs=106.9
Q ss_pred HHHHHHhCCCceEecccC-----ChH-----HHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhc
Q 012478 80 SLRQILELPGVHQGPACF-----DAL-----SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV 149 (462)
Q Consensus 80 ~LR~ll~~~~~iv~p~ay-----Dal-----SArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~ 149 (462)
+|++.++++++++....+ |+. .+..+.+.+.+++-++-... | -+...-+..+..+.+..
T Consensus 1 ~~~~~l~~~~~~~s~E~~PPk~~~~~~~l~~~~~~l~~~~pd~vsVTd~~~-----~------~~~~~s~~~a~~l~~~~ 69 (287)
T PF02219_consen 1 KFQQKLKKGEFVVSFELFPPKGADGEEKLLEAAERLKDLGPDFVSVTDNPG-----G------SSRMMSLLAAAKLLKET 69 (287)
T ss_dssp --HHHHHTSS-EEEEEE---SSHHHHHHHHHHHHHHHTT--SEEEE---GC-----G------TTHHHHHHHHHHHHHHT
T ss_pred ChhHHHhCCCCEEEEEEeCCCCchHHHHHHHHHHHhcCCCCCEEEeecCCC-----C------cccCCcHHHHHHHHHHh
Confidence 478888888766543332 332 12333445667777762121 2 13344445566777777
Q ss_pred CCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEE--
Q 012478 150 SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVI-- 227 (462)
Q Consensus 150 ~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vI-- 227 (462)
++++|+=+-.=--|...+...+..+.++|+..|.+=-+..|+.-.| ..+++.+.....+-|+.+++.. +..|-|
T Consensus 70 g~~~i~Hlt~rd~n~~~l~~~L~~~~~~Gi~niL~l~GD~~~~g~~-~~~~~~~~~~~~~Li~~i~~~~---~~~~~i~v 145 (287)
T PF02219_consen 70 GIEPIPHLTCRDRNREALQSDLLGAHALGIRNILALTGDPPKGGDH-FAKPVFDFDYALDLIRLIRQEY---GDDFSIGV 145 (287)
T ss_dssp T--EEEEEESTTSBHHHHHHHHHHHHHTT--EEEEESS-TSTTSSS-----TTS-SSHHHHHHHHHHHH---GGGSEEEE
T ss_pred CCceEEeecccCCCHHHHHHHHHHHHHcCCCeEEEecCCCCCCCcc-ccCCCchhHHHHHHHHHHHHhc---Cccccccc
Confidence 8888887766334677888888899999999999877766654333 3344433322233344333221 222332
Q ss_pred EEecch-hhcccHHHHHHHHHHhHhcCCcEEEecCCCCHHHHHHHHHhCC----CCceeeeeeecCCCCCCCCHHHHHhc
Q 012478 228 VARTDS-RQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISP----LVPKMANMLEGGGKTPILNPLELEEL 302 (462)
Q Consensus 228 iARTDA-~~~~gldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~----~vP~~~N~l~~~g~tP~ls~~eL~~l 302 (462)
-+--+. -....+++-++|.++=.+||||.++---+-+.+.+.++.+.+. .+|+++.++ |..+.+.+..+
T Consensus 146 a~~P~~hp~~~~~~~~~~~l~~Ki~aGA~f~iTQ~~fd~~~~~~~~~~~~~~g~~~pIi~GI~------p~~s~~~~~~~ 219 (287)
T PF02219_consen 146 AGYPEGHPEAPDFEAELKRLKKKIDAGADFIITQPFFDAEAFERFLDRLREAGIDVPIIPGIM------PLTSAKSARFL 219 (287)
T ss_dssp EE-TTHHTTCSSHHHHHHHHHHHHHTTESEEEEEE-SSHHHHHHHHHHHHHTTHTSEEEEEEE-------HCCHHHHHHH
T ss_pred ccCCCCCccccCHHHHHHHHHHHHHCCCCEEeccccCCHHHHHHHHHHHHHcCCCCcEEEEEe------ccCCHHHHHHH
Confidence 222211 1234577789999999999999988777777777777765421 257665554 33355555444
No 370
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=87.79 E-value=3.6 Score=41.56 Aligned_cols=196 Identities=19% Similarity=0.242 Sum_probs=108.5
Q ss_pred HHHHHhCCCceEe----cccCChHH----HHHHHHhCCcEEEec-cHHHHhhhccCCCC------------CCCCHHHHH
Q 012478 81 LRQILELPGVHQG----PACFDALS----AKLVEKSGFSFCFTS-GFSISAARLALPDT------------GFISYGEMV 139 (462)
Q Consensus 81 LR~ll~~~~~iv~----p~ayDalS----Arl~e~aGfdaI~vS-G~avSas~lG~PD~------------g~vsl~Eml 139 (462)
|.++.+++++..+ .|--|.-+ ++.++++|+|.|=++ -+. -.+.|. .-+++++.+
T Consensus 1 f~~lk~~~~~~li~yitaG~P~~~~~~~~~~~l~~~GaD~iEiGiPfS-----DP~ADGpvIq~A~~rAL~~G~~~~~~~ 75 (259)
T PF00290_consen 1 FAELKKEGRKALIPYITAGYPDLETTLEILKALEEAGADIIEIGIPFS-----DPVADGPVIQKASQRALKNGFTLEKIF 75 (259)
T ss_dssp HHHHHHTTBTEEEEEEETTSSSHHHHHHHHHHHHHTTBSSEEEE--SS-----SCTTSSHHHHHHHHHHHHTT--HHHHH
T ss_pred ChhHHhCCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCC-----CCCCCCHHHHHHHHHHHHCCCCHHHHH
Confidence 4455556554322 23333322 345567899988765 111 123332 246888999
Q ss_pred HHHHHHH-hhcCCcEEEeCCCCCCCHH---HHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHH
Q 012478 140 DQGQLIT-QAVSIPVIGDGDNGYGNAM---NVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAV 215 (462)
Q Consensus 140 ~~~~~I~-ra~~iPVIaD~DtGyG~~~---nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~ 215 (462)
+.++.|. +..++||+. .+|-|+. .+.+-++++.++|++|+.|=|= |.||.. .++.+.
T Consensus 76 ~~~~~ir~~~~~~pivl---m~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDL---------------P~ee~~-~~~~~~ 136 (259)
T PF00290_consen 76 ELVKEIRKKEPDIPIVL---MTYYNPIFQYGIERFFKEAKEAGVDGLIIPDL---------------PPEESE-ELREAA 136 (259)
T ss_dssp HHHHHHHHHCTSSEEEE---EE-HHHHHHH-HHHHHHHHHHHTEEEEEETTS---------------BGGGHH-HHHHHH
T ss_pred HHHHHHhccCCCCCEEE---EeeccHHhccchHHHHHHHHHcCCCEEEEcCC---------------ChHHHH-HHHHHH
Confidence 9999998 677899887 4677763 3556788888999999999884 234432 333322
Q ss_pred HHHHhhCCCe-EEEEecchhhcccHHHHHHHHHHhHhcCCcEEEecCC------CC--HHHHHHHHH---hCCCCceeee
Q 012478 216 DARKESGSDI-VIVARTDSRQALSLEESLRRSRAFADAGADVLFIDAL------AS--KEEMKAFCE---ISPLVPKMAN 283 (462)
Q Consensus 216 ~Ar~~~g~d~-vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~~------~s--~eei~~i~~---~v~~vP~~~N 283 (462)
+. .|-++ .+++-|-. -+|.+.+.+.+-..||+-+. .+ ..++.++.+ ....+|+.+
T Consensus 137 ~~---~gl~~I~lv~p~t~---------~~Ri~~i~~~a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~~~Pv~v- 203 (259)
T PF00290_consen 137 KK---HGLDLIPLVAPTTP---------EERIKKIAKQASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHTDLPVAV- 203 (259)
T ss_dssp HH---TT-EEEEEEETTS----------HHHHHHHHHH-SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTTSS-EEE-
T ss_pred HH---cCCeEEEEECCCCC---------HHHHHHHHHhCCcEEEeeccCCCCCCcccchHHHHHHHHHHHhhcCcceEE-
Confidence 22 23333 44444221 23777777777788886422 11 234444443 233356542
Q ss_pred eeecCCCCCCCCHHHHHh--cCCCEEeccchHHHHHHH
Q 012478 284 MLEGGGKTPILNPLELEE--LGFKLVAYPLSLIGVSVR 319 (462)
Q Consensus 284 ~l~~~g~tP~ls~~eL~~--lGv~~V~yp~~ll~aa~~ 319 (462)
.+|-+ +.++.++ .|..-|+.|+.+++....
T Consensus 204 --GFGI~----~~e~~~~~~~~aDGvIVGSa~v~~i~~ 235 (259)
T PF00290_consen 204 --GFGIS----TPEQAKKLAAGADGVIVGSAFVKIIEE 235 (259)
T ss_dssp --ESSS-----SHHHHHHHHTTSSEEEESHHHHHHHHH
T ss_pred --ecCCC----CHHHHHHHHccCCEEEECHHHHHHHHH
Confidence 33222 4444444 799999999987776443
No 371
>PRK05105 O-succinylbenzoate synthase; Provisional
Probab=87.77 E-value=6.1 Score=40.56 Aligned_cols=101 Identities=14% Similarity=0.226 Sum_probs=71.4
Q ss_pred CCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccH
Q 012478 160 GYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSL 239 (462)
Q Consensus 160 GyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gl 239 (462)
|.|++..+.+.++++ .|...+|+- .|. -+.++-+++|++++++. +++.| |-|+-.....
T Consensus 112 ~~~~~~~~~~~a~~~--~Gf~~~KvK-------vG~------~~~~~d~~~i~~vr~~~----~~~~l--~vDaN~~w~~ 170 (322)
T PRK05105 112 CYGDPDELILKLADM--PGEKVAKVK-------VGL------YEAVRDGMLVNLLLEAI----PDLKL--RLDANRGWTL 170 (322)
T ss_pred ecCCHHHHHHHHHHc--CCCCEEEEE-------ECC------CCHHHHHHHHHHHHHhC----CCCeE--EEECCCCCCH
Confidence 456776666666666 699988883 232 13456678888887663 34333 7788877889
Q ss_pred HHHHHHHHHhHh-cCCcEEEecCC-CCHHHHHHHHHhCCCCceee
Q 012478 240 EESLRRSRAFAD-AGADVLFIDAL-ASKEEMKAFCEISPLVPKMA 282 (462)
Q Consensus 240 deAI~RakAy~e-AGAD~Ifie~~-~s~eei~~i~~~v~~vP~~~ 282 (462)
++|++.++++.+ .|.+.-|+|-+ ++.++++++.+..+ +|+.+
T Consensus 171 ~~A~~~~~~l~~~~~~~i~~iEqP~~~~~~~~~l~~~~~-~PIa~ 214 (322)
T PRK05105 171 EKAQQFAKYVPPDYRHRIAFLEEPCKTPDDSRAFARATG-IAIAW 214 (322)
T ss_pred HHHHHHHHHhhhhcCCCccEEECCCCCHHHHHHHHHhCC-CCEEE
Confidence 999999999987 45677888875 45678888888765 56654
No 372
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=87.72 E-value=2.3 Score=43.53 Aligned_cols=61 Identities=15% Similarity=0.239 Sum_probs=43.8
Q ss_pred HHHHhHhcCCcEEEecCCCCHHHHHHHHHhCCCCceeeeeee-cCCCCCCCCHHHHHhcCCCEEeccc
Q 012478 245 RSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLE-GGGKTPILNPLELEELGFKLVAYPL 311 (462)
Q Consensus 245 RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~l~-~~g~tP~ls~~eL~~lGv~~V~yp~ 311 (462)
.+..+.++|||.|+++-.. .+++++.++.++. ..+ ++ .||-+ .-+..++.+.|++.++.+.
T Consensus 206 ea~ea~~~gaDiI~LDn~s-~e~l~~av~~~~~-~~~---leaSGGI~-~~ni~~yA~tGVD~Is~Ga 267 (281)
T PRK06106 206 QLEEALELGVDAVLLDNMT-PDTLREAVAIVAG-RAI---TEASGRIT-PETAPAIAASGVDLISVGW 267 (281)
T ss_pred HHHHHHHcCCCEEEeCCCC-HHHHHHHHHHhCC-Cce---EEEECCCC-HHHHHHHHhcCCCEEEeCh
Confidence 4555669999999999874 5899988887653 122 33 23433 2467999999999999876
No 373
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=87.69 E-value=11 Score=38.54 Aligned_cols=174 Identities=21% Similarity=0.210 Sum_probs=105.5
Q ss_pred HHHHHhCCcEEEec-cHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCC----CCC-HHHHHHHHHHHHH
Q 012478 103 KLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNG----YGN-AMNVKRTVKGYIK 176 (462)
Q Consensus 103 rl~e~aGfdaI~vS-G~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtG----yG~-~~nv~rtVk~l~~ 176 (462)
+.+.++|.+++.+. |.. .++.|+.+ .++|+|+=...- +.+ .....-+|+..++
T Consensus 50 ~~v~~~g~dav~~~~G~~----~~~~~~y~-----------------~dvplivkl~~~t~l~~~~~~~~~~~~ve~ai~ 108 (265)
T COG1830 50 AKVAEAGADAVAMTPGIA----RSVHRGYA-----------------HDVPLIVKLNGSTSLSPDPNDQVLVATVEDAIR 108 (265)
T ss_pred HHHHhcCCCEEEecHhHH----hhcCcccc-----------------CCcCEEEEeccccccCCCcccceeeeeHHHHHh
Confidence 44556799999987 533 24565543 145655544332 111 1234456888889
Q ss_pred hCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEE--Eecchhhc---ccHHHHHHHHHHhHh
Q 012478 177 AGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIV--ARTDSRQA---LSLEESLRRSRAFAD 251 (462)
Q Consensus 177 AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIi--ARTDA~~~---~gldeAI~RakAy~e 251 (462)
+||++|-.-=-. |.. +-.++++.|..+++.+++.|-.+++. -|...... .+-+..-.-++.-+|
T Consensus 109 lgadAV~~~Vy~-----Gse------~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaae 177 (265)
T COG1830 109 LGADAVGATVYV-----GSE------TEREMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAE 177 (265)
T ss_pred CCCcEEEEEEec-----CCc------chHHHHHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHH
Confidence 999887653222 111 12578889998988888877666553 35444321 233344445677789
Q ss_pred cCCcEEEecCCCCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHH-------HHhcCCCEEeccchHH
Q 012478 252 AGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLE-------LEELGFKLVAYPLSLI 314 (462)
Q Consensus 252 AGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~e-------L~~lGv~~V~yp~~ll 314 (462)
.|||.|=..-+.+.|.++++++.-+ +|++ +.||.|+. +.++ +-+.|..-+.++-..+
T Consensus 178 lGADIiK~~ytg~~e~F~~vv~~~~-vpVv---iaGG~k~~--~~~~~l~~~~~ai~aGa~G~~~GRNif 241 (265)
T COG1830 178 LGADIIKTKYTGDPESFRRVVAACG-VPVV---IAGGPKTE--TEREFLEMVTAAIEAGAMGVAVGRNIF 241 (265)
T ss_pred hcCCeEeecCCCChHHHHHHHHhCC-CCEE---EeCCCCCC--ChHHHHHHHHHHHHccCcchhhhhhhh
Confidence 9999999988888899999998776 6754 35555552 3333 3344555555544433
No 374
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=87.69 E-value=22 Score=33.12 Aligned_cols=140 Identities=16% Similarity=0.205 Sum_probs=78.4
Q ss_pred HHHHHHHHhh-cCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHH
Q 012478 139 VDQGQLITQA-VSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDA 217 (462)
Q Consensus 139 l~~~~~I~ra-~~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~A 217 (462)
.+.++.+.+. .++||++|.-.-... + ..++.+.++|+++|.+=+.. +.+...+-++++++
T Consensus 41 ~~~i~~i~~~~~~~~i~~~~~v~~~~--~--~~~~~~~~aGad~i~~h~~~--------------~~~~~~~~i~~~~~- 101 (202)
T cd04726 41 MEAVRALREAFPDKIIVADLKTADAG--A--LEAEMAFKAGADIVTVLGAA--------------PLSTIKKAVKAAKK- 101 (202)
T ss_pred HHHHHHHHHHCCCCEEEEEEEecccc--H--HHHHHHHhcCCCEEEEEeeC--------------CHHHHHHHHHHHHH-
Confidence 3455666654 479998885443221 1 23578889999999985542 11122222232322
Q ss_pred HHhhCCCeEEE-EecchhhcccHHHHHHHHHHhHhcCCcEEEec-C--------CCCHHHHHHHHHhCCCCceeeeeeec
Q 012478 218 RKESGSDIVIV-ARTDSRQALSLEESLRRSRAFADAGADVLFID-A--------LASKEEMKAFCEISPLVPKMANMLEG 287 (462)
Q Consensus 218 r~~~g~d~vIi-ARTDA~~~~gldeAI~RakAy~eAGAD~Ifie-~--------~~s~eei~~i~~~v~~vP~~~N~l~~ 287 (462)
.|..+.+. --.+ ..+|.+ + +...|+|.+.+. + ....+.++++.+. +.+|.. ..
T Consensus 102 ---~g~~~~v~~~~~~-----t~~e~~---~-~~~~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~i~----~~ 164 (202)
T cd04726 102 ---YGKEVQVDLIGVE-----DPEKRA---K-LLKLGVDIVILHRGIDAQAAGGWWPEDDLKKVKKL-LGVKVA----VA 164 (202)
T ss_pred ---cCCeEEEEEeCCC-----CHHHHH---H-HHHCCCCEEEEcCcccccccCCCCCHHHHHHHHhh-cCCCEE----EE
Confidence 23333321 1211 112322 2 666899998773 2 2345677777654 224443 23
Q ss_pred CCCCCCCCHHHHHhcCCCEEeccchHHH
Q 012478 288 GGKTPILNPLELEELGFKLVAYPLSLIG 315 (462)
Q Consensus 288 ~g~tP~ls~~eL~~lGv~~V~yp~~ll~ 315 (462)
||-+| -+..++.+.|+..++.+..++.
T Consensus 165 GGI~~-~~i~~~~~~Gad~vvvGsai~~ 191 (202)
T cd04726 165 GGITP-DTLPEFKKAGADIVIVGRAITG 191 (202)
T ss_pred CCcCH-HHHHHHHhcCCCEEEEeehhcC
Confidence 45543 3678889999999999987654
No 375
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=87.64 E-value=6.1 Score=37.25 Aligned_cols=67 Identities=24% Similarity=0.107 Sum_probs=43.3
Q ss_pred HHHHHHhHhcCCcEEEec-C-CCCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcCCCEEeccchHH
Q 012478 243 LRRSRAFADAGADVLFID-A-LASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLI 314 (462)
Q Consensus 243 I~RakAy~eAGAD~Ifie-~-~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~ll 314 (462)
.+.+....++|||.|-+- . ....+-++.+.+.+|.+|.+ .-||-++ -...++.+.|+..|..+..++
T Consensus 107 ~~e~~~A~~~Gad~i~~~p~~~~g~~~~~~l~~~~~~~p~~----a~GGI~~-~n~~~~~~~G~~~v~v~s~i~ 175 (190)
T cd00452 107 PTEIMQALELGADIVKLFPAEAVGPAYIKALKGPFPQVRFM----PTGGVSL-DNAAEWLAAGVVAVGGGSLLP 175 (190)
T ss_pred HHHHHHHHHCCCCEEEEcCCcccCHHHHHHHHhhCCCCeEE----EeCCCCH-HHHHHHHHCCCEEEEEchhcc
Confidence 345566678999998653 2 22356666666655544432 3345443 367889999999998877655
No 376
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=87.61 E-value=12 Score=40.84 Aligned_cols=127 Identities=19% Similarity=0.244 Sum_probs=68.7
Q ss_pred hHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhc-CCcEEEeCCCCCCCHHHHHHHHHHHHHh
Q 012478 99 ALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV-SIPVIGDGDNGYGNAMNVKRTVKGYIKA 177 (462)
Q Consensus 99 alSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~-~iPVIaD~DtGyG~~~nv~rtVk~l~~A 177 (462)
.-.++.+.++|++.+.+-+ .+|.. ..+++..+.|.+.. ++|||+ |.+- ..+.++.++++
T Consensus 230 ~e~a~~L~~agvdvivvD~------a~g~~-------~~vl~~i~~i~~~~p~~~vi~----g~v~---t~e~a~~l~~a 289 (486)
T PRK05567 230 EERAEALVEAGVDVLVVDT------AHGHS-------EGVLDRVREIKAKYPDVQIIA----GNVA---TAEAARALIEA 289 (486)
T ss_pred HHHHHHHHHhCCCEEEEEC------CCCcc-------hhHHHHHHHHHhhCCCCCEEE----eccC---CHHHHHHHHHc
Confidence 3445566667787664322 12332 34667777777766 799998 4332 24556678899
Q ss_pred CccEEEeCCCCCC-CCCCCCCCCcc----cCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhc
Q 012478 178 GFAGIILEDQVSP-KGCGHTRGRKV----VSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADA 252 (462)
Q Consensus 178 GaaGI~IEDq~~P-KrCGH~~gk~L----vp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eA 252 (462)
||++|.+=- .| -.|+- +.+ +|+-+++..++ ++... .+.-|+|=---.. + . .+....++
T Consensus 290 Gad~i~vg~--g~gs~~~~---r~~~~~g~p~~~~~~~~~---~~~~~--~~~~viadGGi~~--~----~-di~kAla~ 352 (486)
T PRK05567 290 GADAVKVGI--GPGSICTT---RIVAGVGVPQITAIADAA---EAAKK--YGIPVIADGGIRY--S----G-DIAKALAA 352 (486)
T ss_pred CCCEEEECC--CCCccccc---eeecCCCcCHHHHHHHHH---HHhcc--CCCeEEEcCCCCC--H----H-HHHHHHHh
Confidence 999999722 22 12321 212 45544444433 22221 2456676221111 1 1 13333448
Q ss_pred CCcEEEecCC
Q 012478 253 GADVLFIDAL 262 (462)
Q Consensus 253 GAD~Ifie~~ 262 (462)
|||++++-+.
T Consensus 353 GA~~v~~G~~ 362 (486)
T PRK05567 353 GASAVMLGSM 362 (486)
T ss_pred CCCEEEECcc
Confidence 9999999764
No 377
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=87.57 E-value=16 Score=36.61 Aligned_cols=148 Identities=14% Similarity=0.051 Sum_probs=80.4
Q ss_pred HHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccE
Q 012478 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAG 181 (462)
Q Consensus 102 Arl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaG 181 (462)
|+.++++|++.|=++-.+.+. ..+..-....+ .+.+..+..... .+.++.+=...+-.+ .+.++...+.|+..
T Consensus 26 a~~L~~~GVd~IEvG~~~~~~-~~~~~~~~~~~-~~~~~~i~~~~~-~~~~~~~~~~~~~~~----~~~l~~a~~~gv~~ 98 (266)
T cd07944 26 YRALAAAGIDYVEIGYRSSPE-KEFKGKSAFCD-DEFLRRLLGDSK-GNTKIAVMVDYGNDD----IDLLEPASGSVVDM 98 (266)
T ss_pred HHHHHHCCCCEEEeecCCCCc-cccCCCccCCC-HHHHHHHHhhhc-cCCEEEEEECCCCCC----HHHHHHHhcCCcCE
Confidence 567788999999776211110 11111112222 333333333321 135554444443222 33456667889999
Q ss_pred EEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEec-
Q 012478 182 IILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFID- 260 (462)
Q Consensus 182 I~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie- 260 (462)
|+|-... -..+ ++..+++..++.|- .+...=.|+.. ...+..++-++.+.++|||.|.+.
T Consensus 99 iri~~~~-------------~~~~----~~~~~i~~ak~~G~-~v~~~~~~a~~-~~~~~~~~~~~~~~~~g~~~i~l~D 159 (266)
T cd07944 99 IRVAFHK-------------HEFD----EALPLIKAIKEKGY-EVFFNLMAISG-YSDEELLELLELVNEIKPDVFYIVD 159 (266)
T ss_pred EEEeccc-------------ccHH----HHHHHHHHHHHCCC-eEEEEEEeecC-CCHHHHHHHHHHHHhCCCCEEEEec
Confidence 9996532 0123 33333333333343 23333344433 456888888999999999999874
Q ss_pred --CCCCHHHHHHHHHhC
Q 012478 261 --ALASKEEMKAFCEIS 275 (462)
Q Consensus 261 --~~~s~eei~~i~~~v 275 (462)
|.-+++++.++.+.+
T Consensus 160 T~G~~~P~~v~~lv~~l 176 (266)
T cd07944 160 SFGSMYPEDIKRIISLL 176 (266)
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 456777887777654
No 378
>cd03324 rTSbeta_L-fuconate_dehydratase Human rTS beta is encoded by the rTS gene which, through alternative RNA splicing, also encodes rTS alpha whose mRNA is complementary to thymidylate synthase mRNA. rTS beta expression is associated with the production of small molecules that appear to mediate the down-regulation of thymidylate synthase protein by a novel intercellular signaling mechanism. A member of this family, from Xanthomonas, has been characterized to be a L-fuconate dehydratase. rTS beta belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=87.44 E-value=7.3 Score=41.66 Aligned_cols=98 Identities=17% Similarity=0.224 Sum_probs=70.9
Q ss_pred CHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHH
Q 012478 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (462)
Q Consensus 163 ~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeA 242 (462)
++..+.+.++++.+.|..++||-- | .+.++-+++|++++++. |+++.+ +.|+-...+.++|
T Consensus 196 ~~~~~~~~a~~~~~~Gf~~~KiKv-------g-------~~~~~d~~~v~avRe~v---G~~~~L--~vDaN~~w~~~~A 256 (415)
T cd03324 196 SDEKLRRLCKEALAQGFTHFKLKV-------G-------ADLEDDIRRCRLAREVI---GPDNKL--MIDANQRWDVPEA 256 (415)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeC-------C-------CCHHHHHHHHHHHHHhc---CCCCeE--EEECCCCCCHHHH
Confidence 456677778888889999999931 2 13466678888887763 667655 4577667789999
Q ss_pred HHHHHHhHhcCCcEEEecCC---CCHHHHHHHHHhCC--CCcee
Q 012478 243 LRRSRAFADAGADVLFIDAL---ASKEEMKAFCEISP--LVPKM 281 (462)
Q Consensus 243 I~RakAy~eAGAD~Ifie~~---~s~eei~~i~~~v~--~vP~~ 281 (462)
++.++++.+.| .-|+|-+ .+.+.++++.+..+ .+|+.
T Consensus 257 ~~~~~~L~~~~--l~~iEEP~~~~d~~~~~~L~~~~~~~~iPIa 298 (415)
T cd03324 257 IEWVKQLAEFK--PWWIEEPTSPDDILGHAAIRKALAPLPIGVA 298 (415)
T ss_pred HHHHHHhhccC--CCEEECCCCCCcHHHHHHHHHhcccCCCcee
Confidence 99999999875 4577754 35678888888763 35654
No 379
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=87.43 E-value=6.2 Score=37.78 Aligned_cols=122 Identities=20% Similarity=0.188 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHH
Q 012478 166 NVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRR 245 (462)
Q Consensus 166 nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~R 245 (462)
+..+.++.|.+.|++.++|=|-.. ..+||.. .-+++.+| ++.. +..+.+.+.... .++
T Consensus 30 dp~~~a~~~~~~g~d~l~v~dl~~-~~~~~~~------~~~~i~~i---~~~~---~~pv~~~GgI~~---------~e~ 87 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDG-AKGGEPV------NLELIEEI---VKAV---GIPVQVGGGIRS---------LED 87 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCc-cccCCCC------CHHHHHHH---HHhc---CCCEEEeCCcCC---------HHH
Confidence 445667888889999999987542 1122211 12334443 3332 235555554322 457
Q ss_pred HHHhHhcCCcEEEecC--CCCHHHHHHHHHhCCCCce--eeeee-----ecCC--CCCCCC----HHHHHhcCCCEEecc
Q 012478 246 SRAFADAGADVLFIDA--LASKEEMKAFCEISPLVPK--MANML-----EGGG--KTPILN----PLELEELGFKLVAYP 310 (462)
Q Consensus 246 akAy~eAGAD~Ifie~--~~s~eei~~i~~~v~~vP~--~~N~l-----~~~g--~tP~ls----~~eL~~lGv~~V~yp 310 (462)
++.+.++|||.|++-. +.+++.++++.+.+..-++ .+++- ..++ .++ .+ .+++.++|+..+++.
T Consensus 88 ~~~~~~~Gad~vvigs~~l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ga~~iii~ 166 (234)
T cd04732 88 IERLLDLGVSRVIIGTAAVKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSE-VSLEELAKRFEELGVKAIIYT 166 (234)
T ss_pred HHHHHHcCCCEEEECchHHhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecC-CCHHHHHHHHHHcCCCEEEEE
Confidence 8888889999998854 4677888888888753122 22211 1011 111 12 466888899999885
No 380
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=87.39 E-value=4.2 Score=41.42 Aligned_cols=76 Identities=18% Similarity=0.273 Sum_probs=51.1
Q ss_pred CCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEecCCCCHHHHHHHHHhCC-CCceeeeeeecCCCCCCCCHHHHH
Q 012478 222 GSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISP-LVPKMANMLEGGGKTPILNPLELE 300 (462)
Q Consensus 222 g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~-~vP~~~N~l~~~g~tP~ls~~eL~ 300 (462)
.++..|..-++. ++ .++.+.++|||.|+++. .+.++++++++.++ .+|+. ..||-++ -+.+++.
T Consensus 187 ~~~~~I~VEv~t-----le----ea~eA~~~gaD~I~LD~-~~~e~l~~~v~~~~~~i~le----AsGGIt~-~ni~~~a 251 (277)
T PRK05742 187 APGKPVEVEVES-----LD----ELRQALAAGADIVMLDE-LSLDDMREAVRLTAGRAKLE----ASGGINE-STLRVIA 251 (277)
T ss_pred CCCCeEEEEeCC-----HH----HHHHHHHcCCCEEEECC-CCHHHHHHHHHHhCCCCcEE----EECCCCH-HHHHHHH
Confidence 355666655554 33 45556789999999965 47789999988663 23432 2234332 2568999
Q ss_pred hcCCCEEeccch
Q 012478 301 ELGFKLVAYPLS 312 (462)
Q Consensus 301 ~lGv~~V~yp~~ 312 (462)
+.|+..++.+..
T Consensus 252 ~tGvD~Isvg~l 263 (277)
T PRK05742 252 ETGVDYISIGAM 263 (277)
T ss_pred HcCCCEEEEChh
Confidence 999999998763
No 381
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=87.34 E-value=15 Score=39.18 Aligned_cols=215 Identities=13% Similarity=0.142 Sum_probs=109.0
Q ss_pred ecccCCh----HHHHHHHHhCCcEEEec-cHHHHhhhccCCCCCC---CCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCH
Q 012478 93 GPACFDA----LSAKLVEKSGFSFCFTS-GFSISAARLALPDTGF---ISYGEMVDQGQLITQAVSIPVIGDGDNGYGNA 164 (462)
Q Consensus 93 ~p~ayDa----lSArl~e~aGfdaI~vS-G~avSas~lG~PD~g~---vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~ 164 (462)
+.|+++. --|+.++++|+|++=+- |.--. .+..+.+. -..+.+-+.++.+...+++||++=+-- +.
T Consensus 120 i~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~---~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~iPv~vKLsP---n~ 193 (385)
T PLN02495 120 IMEEYNKDAWEEIIERVEETGVDALEINFSCPHG---MPERKMGAAVGQDCDLLEEVCGWINAKATVPVWAKMTP---NI 193 (385)
T ss_pred ccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCC---CCcCccchhhccCHHHHHHHHHHHHHhhcCceEEEeCC---Ch
Confidence 3465662 34677788999988765 32210 11222211 123333334456666678999998763 33
Q ss_pred HHHHHHHHHHHHhCccEEEeCCCCCC-----------C-------CCCCCCCCcccCHHHHHHHHHHHHHHHH-hhCCCe
Q 012478 165 MNVKRTVKGYIKAGFAGIILEDQVSP-----------K-------GCGHTRGRKVVSREEAVMRIKAAVDARK-ESGSDI 225 (462)
Q Consensus 165 ~nv~rtVk~l~~AGaaGI~IEDq~~P-----------K-------rCGH~~gk~Lvp~ee~~~kI~AA~~Ar~-~~g~d~ 225 (462)
.++...++.+.++||+||.+=....+ . ..|-+.|++|-|.. ...+..+..+.. ....++
T Consensus 194 t~i~~ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGlSG~alkpiA--l~~v~~i~~~~~~~~~~~i 271 (385)
T PLN02495 194 TDITQPARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGYSSKAVRPIA--LAKVMAIAKMMKSEFPEDR 271 (385)
T ss_pred hhHHHHHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCccchhhhHHH--HHHHHHHHHHHhhhccCCC
Confidence 45777788889999999988664421 0 12223456666664 223322322221 111235
Q ss_pred EEEEecchhhcccHHHHHHHHHHhHhcCCcEEEecC--CCC-HHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhc
Q 012478 226 VIVARTDSRQALSLEESLRRSRAFADAGADVLFIDA--LAS-KEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEEL 302 (462)
Q Consensus 226 vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~--~~s-~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~l 302 (462)
-|++=.-- ..-+ .+..|..|||++|-+=. +.. .+.++++.+.+. +.++..| .-+++|+.-.
T Consensus 272 pIiGvGGI---~s~~----Da~e~i~aGAs~VQv~Ta~~~~Gp~vi~~i~~~L~------~~m~~~G---~~si~e~~G~ 335 (385)
T PLN02495 272 SLSGIGGV---ETGG----DAAEFILLGADTVQVCTGVMMHGYPLVKNLCAELQ------DFMKKHN---FSSIEDFRGA 335 (385)
T ss_pred cEEEECCC---CCHH----HHHHHHHhCCCceeEeeeeeecCcHHHHHHHHHHH------HHHHHcC---CCCHHHHhCc
Confidence 55554321 2234 35567789999876421 112 356666666542 1122112 1256676666
Q ss_pred CCCEEeccchHHHHHHHHHHHHHHHHHcCC
Q 012478 303 GFKLVAYPLSLIGVSVRAMQDALTAIKGGR 332 (462)
Q Consensus 303 Gv~~V~yp~~ll~aa~~Am~~~l~~l~~g~ 332 (462)
..+.+.--..|-.....++.+- ..|+.|+
T Consensus 336 ~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~ 364 (385)
T PLN02495 336 SLPYFTTHTDLVQRQKEAIRQR-KAIRKGL 364 (385)
T ss_pred CCcccCcHHHhhHHHHHhhCHH-HHhhhcc
Confidence 6555442223333333333322 3355554
No 382
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=87.33 E-value=13 Score=35.20 Aligned_cols=27 Identities=26% Similarity=0.287 Sum_probs=21.4
Q ss_pred CCCCCCCCHHHHHhcCCCEEeccchHHH
Q 012478 288 GGKTPILNPLELEELGFKLVAYPLSLIG 315 (462)
Q Consensus 288 ~g~tP~ls~~eL~~lGv~~V~yp~~ll~ 315 (462)
||-++. +..+|.+.|+..|+.+..++.
T Consensus 177 GGI~~~-nv~~l~~~GaD~vvvgSai~~ 203 (220)
T PRK05581 177 GGINAD-NIKECAEAGADVFVAGSAVFG 203 (220)
T ss_pred CCCCHH-HHHHHHHcCCCEEEEChhhhC
Confidence 366663 678888899999999988775
No 383
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=87.25 E-value=4.1 Score=42.25 Aligned_cols=62 Identities=11% Similarity=0.130 Sum_probs=44.4
Q ss_pred HHHHhHh------cCCcEEEecCC--------CCHHHHHHHHHhCCCCceeeeeeec-CCCCCCCCHHHHHhcCCCEEec
Q 012478 245 RSRAFAD------AGADVLFIDAL--------ASKEEMKAFCEISPLVPKMANMLEG-GGKTPILNPLELEELGFKLVAY 309 (462)
Q Consensus 245 RakAy~e------AGAD~Ifie~~--------~s~eei~~i~~~v~~vP~~~N~l~~-~g~tP~ls~~eL~~lGv~~V~y 309 (462)
.++.+.+ +|||.|+++-. ++.+++++.++.+... .+ ++. ||-+ .-+..++.+.|+..++.
T Consensus 215 ea~ea~~~~~~~~agaDiImLDnm~~~~~~~~~~~e~l~~av~~~~~~-~~---lEaSGGIt-~~ni~~yA~tGVD~Is~ 289 (308)
T PLN02716 215 EVKEVLEYLSDTKTSLTRVMLDNMVVPLENGDVDVSMLKEAVELINGR-FE---TEASGNVT-LDTVHKIGQTGVTYISS 289 (308)
T ss_pred HHHHHHHhcccccCCCCEEEeCCCcccccccCCCHHHHHHHHHhhCCC-ce---EEEECCCC-HHHHHHHHHcCCCEEEe
Confidence 4555667 99999999987 2678999888866531 12 332 3433 24678999999999998
Q ss_pred cc
Q 012478 310 PL 311 (462)
Q Consensus 310 p~ 311 (462)
+.
T Consensus 290 Ga 291 (308)
T PLN02716 290 GA 291 (308)
T ss_pred Cc
Confidence 76
No 384
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=86.96 E-value=24 Score=36.69 Aligned_cols=158 Identities=14% Similarity=0.026 Sum_probs=79.5
Q ss_pred HHHHHHHHhCCcEEEec---cHHHHhh----hccCCCCCCCCHHH----HHHHHHHHHhhcC--CcEEEe------CCCC
Q 012478 100 LSAKLVEKSGFSFCFTS---GFSISAA----RLALPDTGFISYGE----MVDQGQLITQAVS--IPVIGD------GDNG 160 (462)
Q Consensus 100 lSArl~e~aGfdaI~vS---G~avSas----~lG~PD~g~vsl~E----ml~~~~~I~ra~~--iPVIaD------~DtG 160 (462)
-.|+.++++|||.|-+- |+-++.. ..-..|.--=+++. +++.++.|.+.++ .||.+= .+.|
T Consensus 145 ~AA~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G 224 (343)
T cd04734 145 DAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDTEGG 224 (343)
T ss_pred HHHHHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhccCCC
Confidence 56788899999999776 3332211 11122321124442 3445566666664 343321 1122
Q ss_pred CCCHHHHHHHHHHHHHhC-ccEEEeCCCCCCCCC--CCCCCCcccCH---HHHHHHHHHHHHHHHhhCCCeEEEEecchh
Q 012478 161 YGNAMNVKRTVKGYIKAG-FAGIILEDQVSPKGC--GHTRGRKVVSR---EEAVMRIKAAVDARKESGSDIVIVARTDSR 234 (462)
Q Consensus 161 yG~~~nv~rtVk~l~~AG-aaGI~IEDq~~PKrC--GH~~gk~Lvp~---ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~ 234 (462)
+ +.....+.++.++++| ++.|+|-........ .|.......+. -+++++|+.++ +..++++++-...
T Consensus 225 ~-~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~------~ipvi~~G~i~~~ 297 (343)
T cd04734 225 L-SPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAV------DLPVFHAGRIRDP 297 (343)
T ss_pred C-CHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHc------CCCEEeeCCCCCH
Confidence 2 3567788899999998 899999544321110 01000000111 23344443322 3456666653221
Q ss_pred hcccHHHHHHHHHHhH-hcCCcEEEec--CCCCHHHHHHHHH
Q 012478 235 QALSLEESLRRSRAFA-DAGADVLFID--ALASKEEMKAFCE 273 (462)
Q Consensus 235 ~~~gldeAI~RakAy~-eAGAD~Ifie--~~~s~eei~~i~~ 273 (462)
+.+.... +-+||+|.+- .+.+++...++.+
T Consensus 298 ---------~~~~~~l~~~~~D~V~~gR~~ladP~l~~k~~~ 330 (343)
T cd04734 298 ---------AEAEQALAAGHADMVGMTRAHIADPHLVAKARE 330 (343)
T ss_pred ---------HHHHHHHHcCCCCeeeecHHhHhCccHHHHHHc
Confidence 1223333 3569999983 3456666666654
No 385
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=86.95 E-value=19 Score=37.83 Aligned_cols=149 Identities=18% Similarity=0.144 Sum_probs=93.2
Q ss_pred cCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHH---HhhcCCcEEEe---CCCC--------C
Q 012478 96 CFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLI---TQAVSIPVIGD---GDNG--------Y 161 (462)
Q Consensus 96 ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I---~ra~~iPVIaD---~DtG--------y 161 (462)
..+..|..-+.+.|.|++-+-= .+| ||...---++++..+++| |+..++|+++= -+.| |
T Consensus 106 ~~~~~sve~a~~~GAdAVk~lv------~~~-~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~ 178 (340)
T PRK12858 106 LLDNWSVRRIKEAGADAVKLLL------YYR-PDEDDAINDRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKAEEF 178 (340)
T ss_pred ccccccHHHHHHcCCCEEEEEE------EeC-CCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCccccccccc
Confidence 4455666777788888776532 223 553321124555555555 55668998884 1222 2
Q ss_pred C--CHHHHHHHHHHHH--HhCccEEEeCCCCCCC-CCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhc
Q 012478 162 G--NAMNVKRTVKGYI--KAGFAGIILEDQVSPK-GCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQA 236 (462)
Q Consensus 162 G--~~~nv~rtVk~l~--~AGaaGI~IEDq~~PK-rCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~ 236 (462)
. .+..|.+.+|.+. +.||+-+|+|=-..+| .=|...+..+.+.+|..+..+..+++. +.+++|.+---
T Consensus 179 a~~~p~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~---~~P~vvlsgG~---- 251 (340)
T PRK12858 179 AKVKPEKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDAT---DLPFIFLSAGV---- 251 (340)
T ss_pred cccCHHHHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhC---CCCEEEECCCC----
Confidence 2 3578999999999 4999999997643221 123334466778888888887777764 35677765432
Q ss_pred ccHHHHHHHHHHhHhcCC--cEEEe
Q 012478 237 LSLEESLRRSRAFADAGA--DVLFI 259 (462)
Q Consensus 237 ~gldeAI~RakAy~eAGA--D~Ifi 259 (462)
+.++.++..+...++|| -.+.+
T Consensus 252 -~~~~f~~~l~~A~~aGa~f~Gvl~ 275 (340)
T PRK12858 252 -SPELFRRTLEFACEAGADFSGVLC 275 (340)
T ss_pred -CHHHHHHHHHHHHHcCCCccchhh
Confidence 23556777777788999 55543
No 386
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=86.86 E-value=9.8 Score=39.38 Aligned_cols=88 Identities=20% Similarity=0.138 Sum_probs=53.8
Q ss_pred HHHHHHHHhCCcEEEec-cHHHHhhh-ccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCC---CHHHHHHHHHHH
Q 012478 100 LSAKLVEKSGFSFCFTS-GFSISAAR-LALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYG---NAMNVKRTVKGY 174 (462)
Q Consensus 100 lSArl~e~aGfdaI~vS-G~avSas~-lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG---~~~nv~rtVk~l 174 (462)
-.|++++++|||+|=+= |.-..... -|+=..-.-..+-+.+.++.+.+++++||.+=+--|+- ...+..+.++.+
T Consensus 81 ~aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR~g~~~~~t~~~~~~~~~~l 160 (333)
T PRK11815 81 EAAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHRIGIDDQDSYEFLCDFVDTV 160 (333)
T ss_pred HHHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEEeeeCCCcCHHHHHHHHHHH
Confidence 34677788899998665 32222111 01100011233455666777777778998874433432 235677889999
Q ss_pred HHhCccEEEeCCC
Q 012478 175 IKAGFAGIILEDQ 187 (462)
Q Consensus 175 ~~AGaaGI~IEDq 187 (462)
.++|+++|.+-..
T Consensus 161 ~~aG~d~i~vh~R 173 (333)
T PRK11815 161 AEAGCDTFIVHAR 173 (333)
T ss_pred HHhCCCEEEEcCC
Confidence 9999999998743
No 387
>PRK07534 methionine synthase I; Validated
Probab=86.85 E-value=43 Score=34.97 Aligned_cols=147 Identities=18% Similarity=0.157 Sum_probs=81.5
Q ss_pred HhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhc------CCcEEEeCCC-C-----CC--CHH---HH-H
Q 012478 107 KSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV------SIPVIGDGDN-G-----YG--NAM---NV-K 168 (462)
Q Consensus 107 ~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~------~iPVIaD~Dt-G-----yG--~~~---nv-~ 168 (462)
++|++.|.+..|+.+...++.-. ..-...++...+-++++.+ .+-|.+++-- | +| +.. .. .
T Consensus 56 ~AGAdiI~TnTy~as~~~l~~~~-~~~~~~~l~~~av~lAr~a~~~~~~~~~VaGsIGP~g~~l~~~~~~~~~e~~~~~~ 134 (336)
T PRK07534 56 DAGSDIILTNSFGGTAARLKLHD-AQDRVHELNRAAAEIAREVADKAGRKVIVAGSVGPTGEIMEPMGALTHALAVEAFH 134 (336)
T ss_pred HhcCCEEEecCcccCHHHHHhcC-cHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecCCCccccCCCCCCCHHHHHHHHH
Confidence 58999999889886532333322 1112345554444444322 2345666533 3 12 122 22 2
Q ss_pred HHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchh----hcccHHHHHH
Q 012478 169 RTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSR----QALSLEESLR 244 (462)
Q Consensus 169 rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~----~~~gldeAI~ 244 (462)
..++.|.++||+.+-+|=.. +.+|+..-+++++ +.+.+++|--..+.. ....++++++
T Consensus 135 ~qi~~l~~~gvD~l~~ET~p--------------~l~E~~a~~~~~~----~~~~Pv~vSft~~~~g~l~~G~~~~~~~~ 196 (336)
T PRK07534 135 EQAEGLKAGGADVLWVETIS--------------APEEIRAAAEAAK----LAGMPWCGTMSFDTAGRTMMGLTPADLAD 196 (336)
T ss_pred HHHHHHHhCCCCEEEEeccC--------------CHHHHHHHHHHHH----HcCCeEEEEEEECCCCeeCCCCcHHHHHH
Confidence 33778889999999999753 3455544444443 334556554444332 1245777777
Q ss_pred HHHHhHhcCCcEEEecCCCCHHHH-HHHHH
Q 012478 245 RSRAFADAGADVLFIDALASKEEM-KAFCE 273 (462)
Q Consensus 245 RakAy~eAGAD~Ifie~~~s~eei-~~i~~ 273 (462)
.+.. ..+++|+|-+-|...++.+ +.+.+
T Consensus 197 ~~~~-~~~~~~avGvNC~~gp~~~~~~l~~ 225 (336)
T PRK07534 197 LVEK-LGEPPLAFGANCGVGASDLLRTVLG 225 (336)
T ss_pred HHHh-cCCCceEEEecCCCCHHHHHHHHHH
Confidence 6653 2335599999998756655 44333
No 388
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=86.82 E-value=16 Score=38.39 Aligned_cols=151 Identities=17% Similarity=0.152 Sum_probs=81.7
Q ss_pred HHHHHHHHHHhCccEEEeCCCC-----------CCCCCCCCCCCcccC-HHHHHHHHHHHHHHHHhhCCCeEEEEecchh
Q 012478 167 VKRTVKGYIKAGFAGIILEDQV-----------SPKGCGHTRGRKVVS-REEAVMRIKAAVDARKESGSDIVIVARTDSR 234 (462)
Q Consensus 167 v~rtVk~l~~AGaaGI~IEDq~-----------~PKrCGH~~gk~Lvp-~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~ 234 (462)
..+.+++..++|++||.|-..- ..||...-+| .+-. ..-..+-|++++++ .|+||.|.-|-...
T Consensus 152 f~~AA~ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGG-slenR~Rf~~eii~aIr~~---vg~~~~v~vRls~~ 227 (370)
T cd02929 152 YVDAALRARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGG-SLENRARFWRETLEDTKDA---VGDDCAVATRFSVD 227 (370)
T ss_pred HHHHHHHHHHcCCCEEEEcccccchHHHhhCccccCCccccCC-ChHhhhHHHHHHHHHHHHH---cCCCceEEEEecHH
Confidence 3445667778999999996542 1244433233 2211 12223333344333 36789888886543
Q ss_pred h------cccHHHHHHHHHHhHhcCCcEEEecCC------------C---CHHHHHHHHHhCCCCceeeeeeecCCC-CC
Q 012478 235 Q------ALSLEESLRRSRAFADAGADVLFIDAL------------A---SKEEMKAFCEISPLVPKMANMLEGGGK-TP 292 (462)
Q Consensus 235 ~------~~gldeAI~RakAy~eAGAD~Ifie~~------------~---s~eei~~i~~~v~~vP~~~N~l~~~g~-tP 292 (462)
. ...++|+++-++.+.+. .|++-+-.- + ..+.++++.+.++ +|++.+ ++- +|
T Consensus 228 ~~~~~~g~~~~~e~~~~~~~l~~~-~D~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~ik~~~~-~pvi~~----G~i~~~ 301 (370)
T cd02929 228 ELIGPGGIESEGEGVEFVEMLDEL-PDLWDVNVGDWANDGEDSRFYPEGHQEPYIKFVKQVTS-KPVVGV----GRFTSP 301 (370)
T ss_pred HhcCCCCCCCHHHHHHHHHHHHhh-CCEEEecCCCccccccccccCCccccHHHHHHHHHHCC-CCEEEe----CCCCCH
Confidence 2 12478888888888765 687754321 0 1234455556554 576543 221 12
Q ss_pred CCCHHHHHhcC-CCEEeccchHHHHHHHHHHHHHHHHHcCCC
Q 012478 293 ILNPLELEELG-FKLVAYPLSLIGVSVRAMQDALTAIKGGRI 333 (462)
Q Consensus 293 ~ls~~eL~~lG-v~~V~yp~~ll~aa~~Am~~~l~~l~~g~~ 333 (462)
. ..+++-+-| +.+|.++-.++.-- +....+++|+.
T Consensus 302 ~-~~~~~l~~g~~D~V~~gR~~ladP-----~l~~k~~~g~~ 337 (370)
T cd02929 302 D-KMVEVVKSGILDLIGAARPSIADP-----FLPKKIREGRI 337 (370)
T ss_pred H-HHHHHHHcCCCCeeeechHhhhCc-----hHHHHHHcCCc
Confidence 1 234444444 88888876655432 44556666653
No 389
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=86.79 E-value=19 Score=36.35 Aligned_cols=108 Identities=19% Similarity=0.194 Sum_probs=63.9
Q ss_pred cEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCC-C--CCCCCCCCCCcc-----------cCHHHHHHHHHHHHHH
Q 012478 152 PVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQV-S--PKGCGHTRGRKV-----------VSREEAVMRIKAAVDA 217 (462)
Q Consensus 152 PVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~-~--PKrCGH~~gk~L-----------vp~ee~~~kI~AA~~A 217 (462)
-+|.=+-.||-+.+...+.++.++++||+.|-| +. + |.- +|..+ +..+...+-++..+
T Consensus 16 ali~yi~aG~P~~~~~~~~~~~l~~~Gad~iEl--GiPfSDP~a----DGpvIq~a~~rAL~~g~~~~~~~~~~~~~r-- 87 (263)
T CHL00200 16 ALIPFITAGDPDIVITKKALKILDKKGADIIEL--GIPYSDPLA----DGPIIQEASNRALKQGINLNKILSILSEVN-- 87 (263)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEE--CCCCCCCCc----cCHHHHHHHHHHHHcCCCHHHHHHHHHHHh--
Confidence 455556678888888889999999999999866 33 1 211 12111 11222233333322
Q ss_pred HHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEecCCCCHHHHHHHH
Q 012478 218 RKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFC 272 (462)
Q Consensus 218 r~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~ 272 (462)
++...+++++.=-.-.-..|+|.-+++| .++|+|.|.++-++- ||..++.
T Consensus 88 -~~~~~p~vlm~Y~N~i~~~G~e~F~~~~---~~aGvdgviipDLP~-ee~~~~~ 137 (263)
T CHL00200 88 -GEIKAPIVIFTYYNPVLHYGINKFIKKI---SQAGVKGLIIPDLPY-EESDYLI 137 (263)
T ss_pred -cCCCCCEEEEecccHHHHhCHHHHHHHH---HHcCCeEEEecCCCH-HHHHHHH
Confidence 2223455555544444456777766655 689999999998875 4444443
No 390
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=86.74 E-value=3.1 Score=42.84 Aligned_cols=63 Identities=19% Similarity=0.288 Sum_probs=45.0
Q ss_pred HHHHHhHhcCCcEEEecCCCCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcCCCEEeccc
Q 012478 244 RRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPL 311 (462)
Q Consensus 244 ~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~ 311 (462)
+.+..+.++|||.|+++-.. .++++++++.++. ... +...||-+ .=+..++.+.|+..++.+.
T Consensus 219 eea~ea~~~gaDiI~LDn~s-~e~~~~av~~~~~-~~~--ieaSGGI~-~~ni~~yA~tGVD~Is~ga 281 (296)
T PRK09016 219 DELDQALKAGADIIMLDNFT-TEQMREAVKRTNG-RAL--LEVSGNVT-LETLREFAETGVDFISVGA 281 (296)
T ss_pred HHHHHHHHcCCCEEEeCCCC-hHHHHHHHHhhcC-CeE--EEEECCCC-HHHHHHHHhcCCCEEEeCc
Confidence 34666778999999999875 5899999987653 222 12223433 2367999999999999875
No 391
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=86.67 E-value=24 Score=34.89 Aligned_cols=184 Identities=17% Similarity=0.187 Sum_probs=102.4
Q ss_pred ChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHHh
Q 012478 98 DALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKA 177 (462)
Q Consensus 98 DalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~A 177 (462)
|.--++++++.|.|+|++||.- |. . -++++++...+++++ .+||+.=- |++.++ .-
T Consensus 14 ~~~~~~~~~~~gtdai~vGGS~------~v---~-~~~~~~~~~ik~~~~--~~Pvilfp----~~~~~i--------~~ 69 (219)
T cd02812 14 DEEIAKLAEESGTDAIMVGGSD------GV---S-STLDNVVRLIKRIRR--PVPVILFP----SNPEAV--------SP 69 (219)
T ss_pred HHHHHHHHHhcCCCEEEECCcc------ch---h-hhHHHHHHHHHHhcC--CCCEEEeC----CCcccc--------Cc
Confidence 3445678888999999999822 22 2 477788877777765 69988531 333333 13
Q ss_pred CccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHH--HHHh-hCCCeEEEE------e-cchhhcccHHHHHHHHH
Q 012478 178 GFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVD--ARKE-SGSDIVIVA------R-TDSRQALSLEESLRRSR 247 (462)
Q Consensus 178 GaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~--Ar~~-~g~d~vIiA------R-TDA~~~~gldeAI~Rak 247 (462)
||+++.+=- +. ...+-.=++. .+++-+..... -..+ ....++|+. + |++......+++..-|.
T Consensus 70 ~aDa~l~~s-vl----ns~n~~~i~g--~~~~~~~~~~~~~~~~e~i~~gYiv~~~~~~v~~v~~a~~~~~~e~~~ayA~ 142 (219)
T cd02812 70 GADAYLFPS-VL----NSGDPYWIIG--AQAEAAPEVGKIIPWLELIPEGYLVLNPDSTVARVTGAKTDLKPEDAAAYAL 142 (219)
T ss_pred CCCEEEEEe-ee----cCCCchHHHH--HHHHHHHHhccccccccccceEEEEECCCCceeeeeccCcCCCHHHHHHHHH
Confidence 566666522 10 0000000111 11111111111 0010 111233331 1 22222345688888888
Q ss_pred HhHhcCCcEEEecC---CCCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcCCCEEeccchHHHH
Q 012478 248 AFADAGADVLFIDA---LASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGV 316 (462)
Q Consensus 248 Ay~eAGAD~Ifie~---~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~ll~a 316 (462)
+.+..|--.|++|. ..+.+.++++.+....+|+. +.+|=+++ -..+++.++|+..|+.++.....
T Consensus 143 aae~~g~~ivyLe~SG~~~~~e~I~~v~~~~~~~pl~---vGGGIrs~-e~a~~l~~aGAD~VVVGsai~~~ 210 (219)
T cd02812 143 AAEYLGMPIVYLEYSGAYGPPEVVRAVKKVLGDTPLI---VGGGIRSG-EQAKEMAEAGADTIVVGNIVEED 210 (219)
T ss_pred HHHHcCCeEEEeCCCCCcCCHHHHHHHHHhcCCCCEE---EeCCCCCH-HHHHHHHHcCCCEEEECchhhCC
Confidence 88999988899983 24567888888876235654 23322332 35677888899999999876653
No 392
>PRK13753 dihydropteroate synthase; Provisional
Probab=86.63 E-value=15 Score=37.65 Aligned_cols=104 Identities=14% Similarity=0.086 Sum_probs=66.8
Q ss_pred CCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHH
Q 012478 161 YGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLE 240 (462)
Q Consensus 161 yG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gld 240 (462)
|-+...+.+.++.|++.||+-|=|-.+.. -+|-..++.+|-++||.-++++..+. +..| -.|.+..+
T Consensus 21 ~~~~d~a~~~a~~m~~~GAdIIDIGgeST------rPga~~vs~eeE~~Rv~pvI~~l~~~--~~~I--SIDT~~~~--- 87 (279)
T PRK13753 21 RLDPAGAVTAAIEMLRVGSDVVDVGPAAS------HPDARPVSPADEIRRIAPLLDALSDQ--MHRV--SIDSFQPE--- 87 (279)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEECCCCC------CCCCCcCCHHHHHHHHHHHHHHHHhC--CCcE--EEECCCHH---
Confidence 34567888888999999999999966642 23445688888888888888776643 2222 33554321
Q ss_pred HHHHHHHHhHhcCCcEEE-ecCCCCHHHHHHHHHhCCCCceeee
Q 012478 241 ESLRRSRAFADAGADVLF-IDALASKEEMKAFCEISPLVPKMAN 283 (462)
Q Consensus 241 eAI~RakAy~eAGAD~If-ie~~~s~eei~~i~~~v~~vP~~~N 283 (462)
-+++..++|||+|- |.+..+ +++..++.... +|..+.
T Consensus 88 ----va~~al~aGadiINDVsg~~d-~~~~~vva~~~-~~vVlm 125 (279)
T PRK13753 88 ----TQRYALKRGVGYLNDIQGFPD-PALYPDIAEAD-CRLVVM 125 (279)
T ss_pred ----HHHHHHHcCCCEEEeCCCCCc-hHHHHHHHHcC-CCEEEE
Confidence 24455589999886 466665 45556665543 455443
No 393
>PRK00915 2-isopropylmalate synthase; Validated
Probab=86.44 E-value=11 Score=41.34 Aligned_cols=108 Identities=22% Similarity=0.178 Sum_probs=73.0
Q ss_pred CCHHHHHHHHHHHHh---hcCCcEEEeCCCCCC-CHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHH
Q 012478 133 ISYGEMVDQGQLITQ---AVSIPVIGDGDNGYG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAV 208 (462)
Q Consensus 133 vsl~Eml~~~~~I~r---a~~iPVIaD~DtGyG-~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~ 208 (462)
.+.+|+++.+....+ ..+.-|.+++++++- ++..+.+.++.+.++|+..|.|-|.+ |. ..++++.
T Consensus 113 ~s~~e~l~~~~~~v~~ak~~g~~v~f~~ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTv-----G~------~~P~~~~ 181 (513)
T PRK00915 113 MSREEVLEMAVEAVKYARSYTDDVEFSAEDATRTDLDFLCRVVEAAIDAGATTINIPDTV-----GY------TTPEEFG 181 (513)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEccCC-----CC------CCHHHHH
Confidence 678888877665543 345778999998864 56789999999999999999999986 33 3456777
Q ss_pred HHHHHHHHHHHhh-CCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEE
Q 012478 209 MRIKAAVDARKES-GSDIVIVARTDSRQALSLEESLRRSRAFADAGADVL 257 (462)
Q Consensus 209 ~kI~AA~~Ar~~~-g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~I 257 (462)
+.|+.+++.-... +..+=+-+..| +.-|+.-+.+..+|||+.|
T Consensus 182 ~~i~~l~~~~~~~~~v~l~~H~HND------~GlAvANslaAv~aGa~~V 225 (513)
T PRK00915 182 ELIKTLRERVPNIDKAIISVHCHND------LGLAVANSLAAVEAGARQV 225 (513)
T ss_pred HHHHHHHHhCCCcccceEEEEecCC------CCHHHHHHHHHHHhCCCEE
Confidence 7777776543210 01233333333 2344666677778888854
No 394
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=86.37 E-value=34 Score=33.26 Aligned_cols=133 Identities=10% Similarity=0.041 Sum_probs=73.5
Q ss_pred CCHHHHHHH---HHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHH
Q 012478 133 ISYGEMVDQ---GQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVM 209 (462)
Q Consensus 133 vsl~Eml~~---~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~ 209 (462)
++..++... +..+++..++|+|+.- . +....+.|++||||.-.. .|..+
T Consensus 43 ~~~~~~~~la~~l~~~~~~~~~~liInd------~------~~lA~~~~adGVHlg~~d-------------~~~~~--- 94 (211)
T PRK03512 43 RRDEEVEADVVAAIALGRRYQARLFIND------Y------WRLAIKHQAYGVHLGQED-------------LETAD--- 94 (211)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCeEEEeC------H------HHHHHHcCCCEEEcChHh-------------CCHHH---
Confidence 455555444 4555677789999872 1 233445799999994221 11111
Q ss_pred HHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEecCC------------CCHHHHHHHHHhCCC
Q 012478 210 RIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDAL------------ASKEEMKAFCEISPL 277 (462)
Q Consensus 210 kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~~------------~s~eei~~i~~~v~~ 277 (462)
+ +..++.+ .+++.+- +.++| ++...+.|||.+++-.+ ...+.++++++....
T Consensus 95 ----~---r~~~~~~-~~iG~S~----H~~~e----~~~A~~~gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~~~~~~ 158 (211)
T PRK03512 95 ----L---NAIRAAG-LRLGVST----HDDME----IDVALAARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVERLAD 158 (211)
T ss_pred ----H---HHhcCCC-CEEEEeC----CCHHH----HHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCC
Confidence 1 1112333 3455442 23333 34445789999998543 113567777765433
Q ss_pred CceeeeeeecCCCCCCCCHHHHHhcCCCEEeccchHH
Q 012478 278 VPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLI 314 (462)
Q Consensus 278 vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~ll 314 (462)
+|+. .+ ||-++ -+..++.+.|+.-|-.-..++
T Consensus 159 ~PV~--Ai--GGI~~-~ni~~l~~~Ga~GiAvisai~ 190 (211)
T PRK03512 159 YPTV--AI--GGISL-ERAPAVLATGVGSIAVVSAIT 190 (211)
T ss_pred CCEE--EE--CCCCH-HHHHHHHHcCCCEEEEhhHhh
Confidence 5643 22 34332 356888999988776654444
No 395
>PLN02979 glycolate oxidase
Probab=86.27 E-value=3.7 Score=43.51 Aligned_cols=94 Identities=18% Similarity=0.146 Sum_probs=60.2
Q ss_pred chHHHHHHHHhCCCceEecccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEE
Q 012478 76 SPAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIG 155 (462)
Q Consensus 76 ~~a~~LR~ll~~~~~iv~p~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIa 155 (462)
..-+.||+.- +.++++=|+-+.-.|+.+.++|+|+|.+|+.+- ...|...-+++-+.+..+.+. ..+||++
T Consensus 213 ~dl~wlr~~~--~~PvivKgV~~~~dA~~a~~~Gvd~I~VsnhGG-----rqld~~p~t~~~L~ei~~~~~--~~~~Vi~ 283 (366)
T PLN02979 213 KDVQWLQTIT--KLPILVKGVLTGEDARIAIQAGAAGIIVSNHGA-----RQLDYVPATISALEEVVKATQ--GRIPVFL 283 (366)
T ss_pred HHHHHHHhcc--CCCEEeecCCCHHHHHHHHhcCCCEEEECCCCc-----CCCCCchhHHHHHHHHHHHhC--CCCeEEE
Confidence 3344555533 468999999999999999999999999997662 224544333333332222221 2499998
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhCccEEEe
Q 012478 156 DGDNGYGNAMNVKRTVKGYIKAGFAGIIL 184 (462)
Q Consensus 156 D~DtGyG~~~nv~rtVk~l~~AGaaGI~I 184 (462)
|. |.-+..++. |.+ ..||.+|.|
T Consensus 284 dG--GIr~G~Di~---KAL-ALGAdaV~i 306 (366)
T PLN02979 284 DG--GVRRGTDVF---KAL-ALGASGIFI 306 (366)
T ss_pred eC--CcCcHHHHH---HHH-HcCCCEEEE
Confidence 83 333333444 333 479999988
No 396
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=86.20 E-value=25 Score=37.13 Aligned_cols=157 Identities=13% Similarity=0.103 Sum_probs=81.7
Q ss_pred HHHHHHHHhCCcEEEec----cHHHHhhh---c-cCCCCCCCCHHH----HHHHHHHHHhhc--CCcEEEeC--------
Q 012478 100 LSAKLVEKSGFSFCFTS----GFSISAAR---L-ALPDTGFISYGE----MVDQGQLITQAV--SIPVIGDG-------- 157 (462)
Q Consensus 100 lSArl~e~aGfdaI~vS----G~avSas~---l-G~PD~g~vsl~E----ml~~~~~I~ra~--~iPVIaD~-------- 157 (462)
-.|+.++++|||.|-+- |+-+.-.. . =.-|.--=+++. +++.++.|.+.+ +.||.+=+
T Consensus 154 ~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~ 233 (382)
T cd02931 154 ESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKD 233 (382)
T ss_pred HHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhccc
Confidence 57889999999999664 43332110 0 112211114443 334455555555 35666511
Q ss_pred ---------CCCC-C-CHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCc-ccCH---HHHHHHHHHHHHHHHhhC
Q 012478 158 ---------DNGY-G-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRK-VVSR---EEAVMRIKAAVDARKESG 222 (462)
Q Consensus 158 ---------DtGy-G-~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~-Lvp~---ee~~~kI~AA~~Ar~~~g 222 (462)
|... | +.+...+.++.++++|++-|++-...... + +..... ..+. -.++++|+.++ +
T Consensus 234 ~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~~~~-~-~~~~~~~~~~~~~~~~~~~~ik~~~------~ 305 (382)
T cd02931 234 LRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGSYDA-W-YWNHPPMYQKKGMYLPYCKALKEVV------D 305 (382)
T ss_pred cccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCcc-c-ccccCCccCCcchhHHHHHHHHHHC------C
Confidence 1111 2 34677788999999999999996553110 0 000000 1111 12334443332 3
Q ss_pred CCeEEEEecchhhcccHHHHHHHHHHhHhc-CCcEEEec--CCCCHHHHHHHHH
Q 012478 223 SDIVIVARTDSRQALSLEESLRRSRAFADA-GADVLFID--ALASKEEMKAFCE 273 (462)
Q Consensus 223 ~d~vIiARTDA~~~~gldeAI~RakAy~eA-GAD~Ifie--~~~s~eei~~i~~ 273 (462)
..++++++-... +.+....+. +||+|.+- .+.+++..+++.+
T Consensus 306 ~pvi~~G~i~~~---------~~~~~~l~~g~~D~V~~gR~~ladP~l~~k~~~ 350 (382)
T cd02931 306 VPVIMAGRMEDP---------ELASEAINEGIADMISLGRPLLADPDVVNKIRR 350 (382)
T ss_pred CCEEEeCCCCCH---------HHHHHHHHcCCCCeeeechHhHhCccHHHHHHc
Confidence 467777775321 234444444 49999873 3456667776654
No 397
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=86.18 E-value=8.6 Score=42.16 Aligned_cols=117 Identities=21% Similarity=0.230 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHH
Q 012478 166 NVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRR 245 (462)
Q Consensus 166 nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~R 245 (462)
+..+.++.+.++|+..|+| |-. -||.. ...+.|+.+++. -++..|+|-+-.. .+.
T Consensus 241 ~~~~~~~~l~~ag~d~i~i-d~a----~G~s~--------~~~~~i~~ik~~----~~~~~v~aG~V~t--------~~~ 295 (495)
T PTZ00314 241 EDIERAAALIEAGVDVLVV-DSS----QGNSI--------YQIDMIKKLKSN----YPHVDIIAGNVVT--------ADQ 295 (495)
T ss_pred HHHHHHHHHHHCCCCEEEE-ecC----CCCch--------HHHHHHHHHHhh----CCCceEEECCcCC--------HHH
Confidence 4467788999999999999 432 25543 223445544443 1467777743221 346
Q ss_pred HHHhHhcCCcEEEec---C------------CCCHH---HHHHHHHhCCCCceeeeeeecCC-CCCCCCHHHHHhcCCCE
Q 012478 246 SRAFADAGADVLFID---A------------LASKE---EMKAFCEISPLVPKMANMLEGGG-KTPILNPLELEELGFKL 306 (462)
Q Consensus 246 akAy~eAGAD~Ifie---~------------~~s~e---ei~~i~~~v~~vP~~~N~l~~~g-~tP~ls~~eL~~lGv~~ 306 (462)
++.+.+||||.|.+- + .+... ++.++++... +|++ ..|| ++| -.....-++|...
T Consensus 296 a~~~~~aGad~I~vg~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~-v~vI----adGGi~~~-~di~kAla~GA~~ 369 (495)
T PTZ00314 296 AKNLIDAGADGLRIGMGSGSICITQEVCAVGRPQASAVYHVARYARERG-VPCI----ADGGIKNS-GDICKALALGADC 369 (495)
T ss_pred HHHHHHcCCCEEEECCcCCcccccchhccCCCChHHHHHHHHHHHhhcC-CeEE----ecCCCCCH-HHHHHHHHcCCCE
Confidence 788889999999752 1 22222 3444555443 4543 3334 332 2333444688888
Q ss_pred EeccchH
Q 012478 307 VAYPLSL 313 (462)
Q Consensus 307 V~yp~~l 313 (462)
|..+..+
T Consensus 370 Vm~G~~~ 376 (495)
T PTZ00314 370 VMLGSLL 376 (495)
T ss_pred EEECchh
Confidence 8887753
No 398
>COG4948 L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily [Cell envelope biogenesis, outer membrane / General function prediction only]
Probab=86.10 E-value=15 Score=38.09 Aligned_cols=120 Identities=22% Similarity=0.327 Sum_probs=83.5
Q ss_pred CHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHH
Q 012478 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (462)
Q Consensus 163 ~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeA 242 (462)
....+....+.+.+.|...+||--.. .. ..+-+++|+|++++. |++.-| +.|+-.....++|
T Consensus 143 ~~e~~~~~~~~~~~~G~~~~Klk~g~-------~~------~~~d~~~v~avRe~~---g~~~~l--~iDan~~~~~~~A 204 (372)
T COG4948 143 PEEMAAEAARALVELGFKALKLKVGV-------GD------GDEDLERVRALREAV---GDDVRL--MVDANGGWTLEEA 204 (372)
T ss_pred CHHHHHHHHHHHHhcCCceEEecCCC-------Cc------hHHHHHHHHHHHHHh---CCCceE--EEeCCCCcCHHHH
Confidence 45677788888888999999994432 11 125578999888875 345544 4588888889999
Q ss_pred HHHHHHhHhcCCcEEEecCC---CCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcC-CCEE
Q 012478 243 LRRSRAFADAGADVLFIDAL---ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELG-FKLV 307 (462)
Q Consensus 243 I~RakAy~eAGAD~Ifie~~---~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lG-v~~V 307 (462)
++-+++.++.| .-|+|-+ .+.+.++++.+.++ +|+.+.=.. +-.....+|-+.| ++.|
T Consensus 205 ~~~~~~l~~~~--l~~iEeP~~~~d~~~~~~l~~~~~-~PIa~gEs~----~~~~~~~~l~~~~a~div 266 (372)
T COG4948 205 IRLARALEEYG--LEWIEEPLPPDDLEGLRELRAATS-TPIAAGESV----YTRWDFRRLLEAGAVDIV 266 (372)
T ss_pred HHHHHHhcccC--cceEECCCCccCHHHHHHHHhcCC-CCEecCccc----ccHHHHHHHHHcCCCCee
Confidence 99999999998 7888865 35678888888765 666543111 1123567777778 4444
No 399
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=86.06 E-value=3.4 Score=42.57 Aligned_cols=93 Identities=18% Similarity=0.291 Sum_probs=55.5
Q ss_pred HHHHHHHHhCCCceEecccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeC
Q 012478 78 AKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDG 157 (462)
Q Consensus 78 a~~LR~ll~~~~~iv~p~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~ 157 (462)
...+++ ++..+..+++.+-+.--|+.++++|.|+|.+-|+..- -+.| ++.+ ........|.+.+++|||+=
T Consensus 126 ~~~i~~-l~~~gi~v~~~v~s~~~A~~a~~~G~D~iv~qG~eAG-GH~g-~~~~-----~~~~L~~~v~~~~~iPViaA- 196 (330)
T PF03060_consen 126 PEVIER-LHAAGIKVIPQVTSVREARKAAKAGADAIVAQGPEAG-GHRG-FEVG-----STFSLLPQVRDAVDIPVIAA- 196 (330)
T ss_dssp HHHHHH-HHHTT-EEEEEESSHHHHHHHHHTT-SEEEEE-TTSS-EE----SSG------HHHHHHHHHHH-SS-EEEE-
T ss_pred HHHHHH-HHHcCCccccccCCHHHHHHhhhcCCCEEEEeccccC-CCCC-cccc-----ceeeHHHHHhhhcCCcEEEe-
Confidence 344555 4445688888999999999999999999998876522 2333 2212 34445566667778999994
Q ss_pred CCCCCCHHHHHHHHHHHHHhCccEEEe
Q 012478 158 DNGYGNAMNVKRTVKGYIKAGFAGIIL 184 (462)
Q Consensus 158 DtGyG~~~nv~rtVk~l~~AGaaGI~I 184 (462)
-|.++...+ ..+...||+||.+
T Consensus 197 -GGI~dg~~i----aaal~lGA~gV~~ 218 (330)
T PF03060_consen 197 -GGIADGRGI----AAALALGADGVQM 218 (330)
T ss_dssp -SS--SHHHH----HHHHHCT-SEEEE
T ss_pred -cCcCCHHHH----HHHHHcCCCEeec
Confidence 234454333 3556789999998
No 400
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=85.98 E-value=21 Score=37.77 Aligned_cols=146 Identities=19% Similarity=0.244 Sum_probs=96.9
Q ss_pred HHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEE
Q 012478 104 LVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGII 183 (462)
Q Consensus 104 l~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~ 183 (462)
-++++|+|.+=++ .|| .|-.+....|.+..++|||+|+-+= ++..-...+.|++.+.
T Consensus 44 ~L~~aG~dIVRvt----------v~~------~e~A~A~~~Ik~~~~vPLVaDiHf~-------~rla~~~~~~g~~k~R 100 (361)
T COG0821 44 ALERAGCDIVRVT----------VPD------MEAAEALKEIKQRLNVPLVADIHFD-------YRLALEAAECGVDKVR 100 (361)
T ss_pred HHHHcCCCEEEEe----------cCC------HHHHHHHHHHHHhCCCCEEEEeecc-------HHHHHHhhhcCcceEE
Confidence 4567899888765 222 2334566778888899999998763 4555667788999999
Q ss_pred eCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhh------------cccHHHHHHHHHHhHh
Q 012478 184 LEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQ------------ALSLEESLRRSRAFAD 251 (462)
Q Consensus 184 IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~------------~~gldeAI~RakAy~e 251 (462)
|.-+- .+. -+|++..++++++.|..+.|=...-++. ..-++.|++-++.+++
T Consensus 101 INPGN-------ig~---------~~~v~~vVe~Ak~~g~piRIGVN~GSLek~~~~ky~~pt~ealveSAl~~a~~~e~ 164 (361)
T COG0821 101 INPGN-------IGF---------KDRVREVVEAAKDKGIPIRIGVNAGSLEKRLLEKYGGPTPEALVESALEHAELLEE 164 (361)
T ss_pred ECCcc-------cCc---------HHHHHHHHHHHHHcCCCEEEecccCchhHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 97652 221 1277777777776666666655544431 1135779999999999
Q ss_pred cCCcEEEecCCCC-----HHHHHHHHHhCCCCceeeeeeecCC
Q 012478 252 AGADVLFIDALAS-----KEEMKAFCEISPLVPKMANMLEGGG 289 (462)
Q Consensus 252 AGAD~Ifie~~~s-----~eei~~i~~~v~~vP~~~N~l~~~g 289 (462)
.|=+=|.+-.-.| .+..+.+++... .|+=+-++|.|+
T Consensus 165 l~f~~i~iS~K~Sdv~~~v~aYr~lA~~~d-yPLHLGvTEAG~ 206 (361)
T COG0821 165 LGFDDIKVSVKASDVQLMVAAYRLLAKRCD-YPLHLGVTEAGM 206 (361)
T ss_pred CCCCcEEEEEEcCCHHHHHHHHHHHHHhcC-CCcccceecccC
Confidence 9988766644322 234445556655 688778887643
No 401
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=85.93 E-value=21 Score=37.63 Aligned_cols=146 Identities=17% Similarity=0.269 Sum_probs=94.4
Q ss_pred HHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEE
Q 012478 103 KLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGI 182 (462)
Q Consensus 103 rl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI 182 (462)
+-++++|++.+=++ .|| .+-.+....|.+.+++|||||+-|-| +.+-..+++|++.|
T Consensus 41 ~~L~~aGceiVRva----------vp~------~~~A~al~~I~~~~~iPlVADIHFd~-------~lAl~a~~~g~dki 97 (346)
T TIGR00612 41 RALEEAGCDIVRVT----------VPD------RESAAAFEAIKEGTNVPLVADIHFDY-------RLAALAMAKGVAKV 97 (346)
T ss_pred HHHHHcCCCEEEEc----------CCC------HHHHHhHHHHHhCCCCCEEEeeCCCc-------HHHHHHHHhccCeE
Confidence 34667899988654 333 22334567788889999999998864 33334557899999
Q ss_pred EeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhh------------cccHHHHHHHHHHhH
Q 012478 183 ILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQ------------ALSLEESLRRSRAFA 250 (462)
Q Consensus 183 ~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~------------~~gldeAI~RakAy~ 250 (462)
.|.-+ +.++ -+|++..++++++.+..+.|=...-++. ..-.+.|++-++.++
T Consensus 98 RINPG-------Nig~---------~e~v~~vv~~ak~~~ipIRIGVN~GSL~~~~~~kyg~~t~eamveSAl~~v~~le 161 (346)
T TIGR00612 98 RINPG-------NIGF---------RERVRDVVEKARDHGKAMRIGVNHGSLERRLLEKYGDATAEAMVQSALEEAAILE 161 (346)
T ss_pred EECCC-------CCCC---------HHHHHHHHHHHHHCCCCEEEecCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 99765 3432 2466666666665555555544433321 113577999999999
Q ss_pred hcCCcEEEecCCC-----CHHHHHHHHHhCCCCceeeeeeecC
Q 012478 251 DAGADVLFIDALA-----SKEEMKAFCEISPLVPKMANMLEGG 288 (462)
Q Consensus 251 eAGAD~Ifie~~~-----s~eei~~i~~~v~~vP~~~N~l~~~ 288 (462)
+.|=+=|.+-.-. ..+..+.+++..+ +|+=+-++|.|
T Consensus 162 ~~~F~diviS~KsSdv~~~i~ayr~la~~~d-yPLHlGVTEAG 203 (346)
T TIGR00612 162 KLGFRNVVLSMKASDVAETVAAYRLLAERSD-YPLHLGVTEAG 203 (346)
T ss_pred HCCCCcEEEEEEcCCHHHHHHHHHHHHhhCC-CCceeccccCC
Confidence 9998877764322 2334445556554 78888888864
No 402
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=85.86 E-value=42 Score=33.88 Aligned_cols=169 Identities=15% Similarity=0.208 Sum_probs=101.0
Q ss_pred CChH-HHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHH
Q 012478 97 FDAL-SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYI 175 (462)
Q Consensus 97 yDal-SArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~ 175 (462)
+|+. -|+..+++|+.+|- .+--|..-.-+++++ +.+++.+++||+.- +...++.+++++.
T Consensus 61 ~d~~~~A~~y~~~GA~aIS---------VlTe~~~F~Gs~~~l----~~v~~~v~~PvL~K--DFIid~~QI~ea~---- 121 (247)
T PRK13957 61 YHPVQIAKTYETLGASAIS---------VLTDQSYFGGSLEDL----KSVSSELKIPVLRK--DFILDEIQIREAR---- 121 (247)
T ss_pred CCHHHHHHHHHHCCCcEEE---------EEcCCCcCCCCHHHH----HHHHHhcCCCEEec--cccCCHHHHHHHH----
Confidence 4443 46777888998872 233333333344433 44555678999864 3356777777553
Q ss_pred HhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCc
Q 012478 176 KAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGAD 255 (462)
Q Consensus 176 ~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD 255 (462)
.+||++|.+==. +.+.+ +++...+.+..+|-+.+|=.++.+. +....++||+
T Consensus 122 ~~GADavLLI~~-------------~L~~~----~l~~l~~~a~~lGle~LVEVh~~~E-----------l~~a~~~ga~ 173 (247)
T PRK13957 122 AFGASAILLIVR-------------ILTPS----QIKSFLKHASSLGMDVLVEVHTEDE-----------AKLALDCGAE 173 (247)
T ss_pred HcCCCEEEeEHh-------------hCCHH----HHHHHHHHHHHcCCceEEEECCHHH-----------HHHHHhCCCC
Confidence 389999977322 23333 4445555566678888888777542 3335568999
Q ss_pred EEEecCC------CCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcCCCEEeccchHHHH
Q 012478 256 VLFIDAL------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGV 316 (462)
Q Consensus 256 ~Ifie~~------~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~ll~a 316 (462)
.|-|..- .+.+...++...+|. ..+-+.+.|=++| -....|... ++-++.|.+++.+
T Consensus 174 iiGINnRdL~t~~vd~~~~~~L~~~ip~--~~~~IsESGI~t~-~d~~~l~~~-~davLvG~~lm~~ 236 (247)
T PRK13957 174 IIGINTRDLDTFQIHQNLVEEVAAFLPP--NIVKVGESGIESR-SDLDKFRKL-VDAALIGTYFMEK 236 (247)
T ss_pred EEEEeCCCCccceECHHHHHHHHhhCCC--CcEEEEcCCCCCH-HHHHHHHHh-CCEEEECHHHhCC
Confidence 9988642 245566666666652 2233445432322 123344665 9999999988765
No 403
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=85.86 E-value=5.2 Score=42.00 Aligned_cols=94 Identities=17% Similarity=0.136 Sum_probs=58.7
Q ss_pred HHHHHHHHhCCCceEecccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeC
Q 012478 78 AKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDG 157 (462)
Q Consensus 78 a~~LR~ll~~~~~iv~p~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~ 157 (462)
-+.+++. -+.++++=|+.+.-.|+.+.++|+++|++|+.+=- .-|.+.-|.+-+.+....+ ..++||++|.
T Consensus 217 i~~~~~~--~~~pvivKgv~~~~da~~~~~~G~~~i~vs~hGGr-----~~d~~~~~~~~L~~i~~~~--~~~~~i~~dg 287 (356)
T PF01070_consen 217 IEWIRKQ--WKLPVIVKGVLSPEDAKRAVDAGVDGIDVSNHGGR-----QLDWGPPTIDALPEIRAAV--GDDIPIIADG 287 (356)
T ss_dssp HHHHHHH--CSSEEEEEEE-SHHHHHHHHHTT-SEEEEESGTGT-----SSTTS-BHHHHHHHHHHHH--TTSSEEEEES
T ss_pred HHHHhcc--cCCceEEEecccHHHHHHHHhcCCCEEEecCCCcc-----cCccccccccccHHHHhhh--cCCeeEEEeC
Confidence 3444443 35689999999999999999999999999976622 1355655555554444333 2469999992
Q ss_pred CCCCCCHHHHHHHHHHHHHhCccEEEeCC
Q 012478 158 DNGYGNAMNVKRTVKGYIKAGFAGIILED 186 (462)
Q Consensus 158 DtGyG~~~nv~rtVk~l~~AGaaGI~IED 186 (462)
|.-+..++. | ....||.+|-|--
T Consensus 288 --Gir~g~Dv~---k-alaLGA~~v~igr 310 (356)
T PF01070_consen 288 --GIRRGLDVA---K-ALALGADAVGIGR 310 (356)
T ss_dssp --S--SHHHHH---H-HHHTT-SEEEESH
T ss_pred --CCCCHHHHH---H-HHHcCCCeEEEcc
Confidence 222334444 3 3358999998833
No 404
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=85.83 E-value=28 Score=36.53 Aligned_cols=147 Identities=20% Similarity=0.152 Sum_probs=77.1
Q ss_pred HHHHHHHHHHhCccEEEeCCCC--------CC---CCCCCCCCCcccCH----HHHHHHHHHHHHHHHhhCCCeEEEEec
Q 012478 167 VKRTVKGYIKAGFAGIILEDQV--------SP---KGCGHTRGRKVVSR----EEAVMRIKAAVDARKESGSDIVIVART 231 (462)
Q Consensus 167 v~rtVk~l~~AGaaGI~IEDq~--------~P---KrCGH~~gk~Lvp~----ee~~~kI~AA~~Ar~~~g~d~vIiART 231 (462)
-.++++...+||.+||.|-..- .| +|--.-+| .+-.. -|.++.|+++ .|+++ |.-|-
T Consensus 161 f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGG-slENR~Rf~~Eiv~aVr~~------vg~~~-igvRi 232 (362)
T PRK10605 161 FRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGG-SVENRARLVLEVVDAGIAE------WGADR-IGIRI 232 (362)
T ss_pred HHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCC-cHHHHHHHHHHHHHHHHHH------cCCCe-EEEEE
Confidence 3455677888999999995432 12 22211122 11111 1233333322 35565 56675
Q ss_pred chh-------hcccHHH-HHHHHHHhHhcCCcEEEecCCC-------CHHHHHHHHHhCCCCceeeeeeecCCCCCCCCH
Q 012478 232 DSR-------QALSLEE-SLRRSRAFADAGADVLFIDALA-------SKEEMKAFCEISPLVPKMANMLEGGGKTPILNP 296 (462)
Q Consensus 232 DA~-------~~~glde-AI~RakAy~eAGAD~Ifie~~~-------s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~ 296 (462)
... ....++| +++-++.+.++|.|.|=+-... ..+..+++.+.++ +|++++ ++.+|.. .
T Consensus 233 s~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~~~~~~~~~~~ik~~~~-~pv~~~----G~~~~~~-a 306 (362)
T PRK10605 233 SPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAGGEPYSDAFREKVRARFH-GVIIGA----GAYTAEK-A 306 (362)
T ss_pred CCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEeccccccCCccccHHHHHHHHHHCC-CCEEEe----CCCCHHH-H
Confidence 332 1245788 8999999999999998654321 2223345555554 454422 2334432 3
Q ss_pred HHHHhcC-CCEEeccchHHHHHHHHHHHHHHHHHcCC
Q 012478 297 LELEELG-FKLVAYPLSLIGVSVRAMQDALTAIKGGR 332 (462)
Q Consensus 297 ~eL~~lG-v~~V~yp~~ll~aa~~Am~~~l~~l~~g~ 332 (462)
+++-+-| +.+|.++-.++.-- +....+++|.
T Consensus 307 e~~i~~G~~D~V~~gR~~iadP-----d~~~k~~~g~ 338 (362)
T PRK10605 307 ETLIGKGLIDAVAFGRDYIANP-----DLVARLQRKA 338 (362)
T ss_pred HHHHHcCCCCEEEECHHhhhCc-----cHHHHHhcCC
Confidence 3333334 88888876554322 3444555553
No 405
>PRK00915 2-isopropylmalate synthase; Validated
Probab=85.79 E-value=19 Score=39.67 Aligned_cols=273 Identities=21% Similarity=0.195 Sum_probs=141.7
Q ss_pred HHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhc-CCcEEEeCCCCCCCHHHHHHHHHHHHHhCcc
Q 012478 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV-SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFA 180 (462)
Q Consensus 102 Arl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~-~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaa 180 (462)
|+.+.++|++.|=++..+++ | .| .+.++.|.... +..|.+=.. .....+.++.+.+.++|+.
T Consensus 32 a~~L~~~Gv~~IE~G~p~~s------~-------~d-~~~v~~i~~~~~~~~i~a~~r---~~~~did~a~~a~~~~~~~ 94 (513)
T PRK00915 32 AKQLERLGVDVIEAGFPASS------P-------GD-FEAVKRIARTVKNSTVCGLAR---AVKKDIDAAAEALKPAEAP 94 (513)
T ss_pred HHHHHHcCCCEEEEcCCCCC------h-------HH-HHHHHHHHhhCCCCEEEEEcc---CCHHHHHHHHHHhhcCCCC
Confidence 46677899999887532211 1 12 12335554432 233433222 2345677777777789999
Q ss_pred EEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEec
Q 012478 181 GIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFID 260 (462)
Q Consensus 181 GI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie 260 (462)
.|++-..+++- |...+-=.+.+|.++++..+++..++.|..+.+.+ -|+. ..+.+.+++-+++..++|||.|.+.
T Consensus 95 ~v~i~~~~Sd~---h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~-ed~~-r~d~~~l~~~~~~~~~~Ga~~i~l~ 169 (513)
T PRK00915 95 RIHTFIATSPI---HMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSA-EDAT-RTDLDFLCRVVEAAIDAGATTINIP 169 (513)
T ss_pred EEEEEECCcHH---HHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEe-CCCC-CCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 99998776543 21111113578889888877777666554433332 2332 2356888999999999999999875
Q ss_pred ---CCCCHHHHHHHHHh----CCCCc-eeeeeeecCCCCCCC---CHHHHHhcCCCEEeccchHH--HHHHHHHHHHHHH
Q 012478 261 ---ALASKEEMKAFCEI----SPLVP-KMANMLEGGGKTPIL---NPLELEELGFKLVAYPLSLI--GVSVRAMQDALTA 327 (462)
Q Consensus 261 ---~~~s~eei~~i~~~----v~~vP-~~~N~l~~~g~tP~l---s~~eL~~lGv~~V~yp~~ll--~aa~~Am~~~l~~ 327 (462)
|...++++.++.+. ++..+ .++.+=. .. .-.+ ..-.--+.|+++|--....+ ++...++++.+..
T Consensus 170 DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~-HN-D~GlAvANslaAv~aGa~~Vd~Tv~GlGERaGNa~lE~vv~~ 247 (513)
T PRK00915 170 DTVGYTTPEEFGELIKTLRERVPNIDKAIISVHC-HN-DLGLAVANSLAAVEAGARQVECTINGIGERAGNAALEEVVMA 247 (513)
T ss_pred cCCCCCCHHHHHHHHHHHHHhCCCcccceEEEEe-cC-CCCHHHHHHHHHHHhCCCEEEEEeecccccccCccHHHHHHH
Confidence 34566676666544 33200 2232211 11 1112 12233357877775544433 3444455555555
Q ss_pred HHcC--CCCCCCCCCCHHHHHHhcCcccHHHHHHhhcccccccccccccCCCCCCCCCCcchhhhhcCCCCCCeeEeeCc
Q 012478 328 IKGG--RIPSPGSMPSFQEIKETLGFNTYYEEEKRYATSMRRLSSENVTSNSYDTQPMAQDDTARRGQSSQDPIVEVITP 405 (462)
Q Consensus 328 l~~g--~~~~~~~~~s~~e~~~lvg~~~~~~~e~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (462)
|..- ..... ....++.+.++ .++.+........++ .+-.|.|.|+-..---.|.-.+... ..|.+.|
T Consensus 248 L~~~~~~~g~~-~~idl~~l~~~---s~~v~~~~~~~~~~~---~PivG~~aF~h~sGiH~dgi~k~~~----~Ye~~~P 316 (513)
T PRK00915 248 LKTRKDIYGVE-TGINTEEIYRT---SRLVSQLTGMPVQPN---KAIVGANAFAHESGIHQDGVLKNRE----TYEIMTP 316 (513)
T ss_pred HHhhhcccCCC-CCcCHHHHHHH---HHHHHHHhCCCCCCC---CCccChhHHHhccchhHHHHcCCcc----cccccCH
Confidence 5321 11111 11234444322 223333332222222 2445666666665555555544322 4455667
Q ss_pred cccc
Q 012478 406 EVYT 409 (462)
Q Consensus 406 ~~~~ 409 (462)
+...
T Consensus 317 e~vG 320 (513)
T PRK00915 317 ESVG 320 (513)
T ss_pred HHcC
Confidence 6653
No 406
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=85.78 E-value=4.5 Score=42.56 Aligned_cols=100 Identities=16% Similarity=0.161 Sum_probs=62.5
Q ss_pred HHHHHhHhcCCcEEEe--c-------CCCCHHHHHHHHHhCC-CCceeeeeeecCCCCCCCCHHHHHhcCCCEEeccchH
Q 012478 244 RRSRAFADAGADVLFI--D-------ALASKEEMKAFCEISP-LVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSL 313 (462)
Q Consensus 244 ~RakAy~eAGAD~Ifi--e-------~~~s~eei~~i~~~v~-~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~l 313 (462)
+.++...++|||.|.+ + ++.+.+.+.++.+.+. .+|++++ ||-.-..+.-+.-.+|.+-|.++..+
T Consensus 233 ~dA~~a~~~G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~d----GGIr~g~Di~kaLalGA~~V~iGr~~ 308 (351)
T cd04737 233 EDADVAINAGADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFD----SGVRRGEHVFKALASGADAVAVGRPV 308 (351)
T ss_pred HHHHHHHHcCCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEE----CCCCCHHHHHHHHHcCCCEEEECHHH
Confidence 4678888999999999 2 2334567777777663 2555432 34333334444555999999999987
Q ss_pred HHHH----HHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCcccHHHH
Q 012478 314 IGVS----VRAMQDALTAIKGGRIPSPGSMPSFQEIKETLGFNTYYEE 357 (462)
Q Consensus 314 l~aa----~~Am~~~l~~l~~g~~~~~~~~~s~~e~~~lvg~~~~~~~ 357 (462)
+.+. ..++.++++.|++. ++....++|.....++
T Consensus 309 l~~la~~G~~gv~~~l~~l~~E----------l~~~m~l~G~~~i~el 346 (351)
T cd04737 309 LYGLALGGAQGVASVLEHLNKE----------LKIVMQLAGTRTIEDV 346 (351)
T ss_pred HHHHhhchHHHHHHHHHHHHHH----------HHHHHHHHCCCCHHHh
Confidence 7654 34445555555432 3455555666655554
No 407
>PRK08999 hypothetical protein; Provisional
Probab=85.74 E-value=13 Score=37.49 Aligned_cols=129 Identities=16% Similarity=0.147 Sum_probs=0.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHH
Q 012478 128 PDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEA 207 (462)
Q Consensus 128 PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~ 207 (462)
++...-.+.+.+.+.+.+++..++++|++ .-++...+.|++|||+.....|
T Consensus 166 k~~~~~~~~~~~~~l~~~~~~~~~~liin------------d~~~la~~~~~~GvHl~~~d~~----------------- 216 (312)
T PRK08999 166 PQLPPAAYRALARAALGLCRRAGAQLLLN------------GDPELAEDLGADGVHLTSAQLA----------------- 216 (312)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCEEEEE------------CcHHHHHhcCCCEEEcChhhcC-----------------
Q ss_pred HHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEecCC-----------CCHHHHHHHHHhCC
Q 012478 208 VMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDAL-----------ASKEEMKAFCEISP 276 (462)
Q Consensus 208 ~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~~-----------~s~eei~~i~~~v~ 276 (462)
...++. ++++.+|-.-+-. ++.++...+.|||.|++-.+ ...+.++++++.+.
T Consensus 217 ------~~~~r~-~~~~~~ig~S~h~---------~~~~~~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~~~~~~ 280 (312)
T PRK08999 217 ------ALAARP-LPAGRWVAASCHD---------AEELARAQRLGVDFAVLSPVQPTASHPGAAPLGWEGFAALIAGVP 280 (312)
T ss_pred ------hHhhcc-CCCCCEEEEecCC---------HHHHHHHHhcCCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCC
Q ss_pred CCceeeeeeecCCCCCCCCHHHHHhcCCCEE
Q 012478 277 LVPKMANMLEGGGKTPILNPLELEELGFKLV 307 (462)
Q Consensus 277 ~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V 307 (462)
+|+. .-||-++ -+..++.+.|+.-|
T Consensus 281 -~Pv~----AiGGI~~-~~~~~~~~~g~~gv 305 (312)
T PRK08999 281 -LPVY----ALGGLGP-GDLEEAREHGAQGI 305 (312)
T ss_pred -CCEE----EECCCCH-HHHHHHHHhCCCEE
No 408
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=85.71 E-value=14 Score=36.09 Aligned_cols=175 Identities=20% Similarity=0.308 Sum_probs=99.3
Q ss_pred CChH-HHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHH
Q 012478 97 FDAL-SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYI 175 (462)
Q Consensus 97 yDal-SArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~ 175 (462)
.|+. .|+..++.|++-+++--+--+ .-| -....+.++.|++.+.+||.+|. |.-+ .+.++++.
T Consensus 29 ~dP~~~a~~~~~~g~~~l~ivDLdaa--~~g--------~~~n~~~i~~i~~~~~~~i~vgG--GIrs----~ed~~~ll 92 (229)
T PF00977_consen 29 GDPVEVAKAFNEQGADELHIVDLDAA--KEG--------RGSNLELIKEIAKETGIPIQVGG--GIRS----IEDAERLL 92 (229)
T ss_dssp CCHHHHHHHHHHTT-SEEEEEEHHHH--CCT--------HHHHHHHHHHHHHHSSSEEEEES--SE-S----HHHHHHHH
T ss_pred cCHHHHHHHHHHcCCCEEEEEEccCc--ccC--------chhHHHHHHHHHhcCCccEEEeC--ccCc----HHHHHHHH
Confidence 3443 456667889999999865422 223 23566778889999899999882 3333 34456788
Q ss_pred HhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEE---Eecc------hhh---cccHHHHH
Q 012478 176 KAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIV---ARTD------SRQ---ALSLEESL 243 (462)
Q Consensus 176 ~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIi---ARTD------A~~---~~gldeAI 243 (462)
++||.-|.|--.. +.++ ++++++.... |.+-+++ +|-. .-. ...+.|.
T Consensus 93 ~~Ga~~Vvigt~~------------~~~~-~~l~~~~~~~------g~~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~- 152 (229)
T PF00977_consen 93 DAGADRVVIGTEA------------LEDP-ELLEELAERY------GSQRIVVSLDARDGYKVATNGWQESSGIDLEEF- 152 (229)
T ss_dssp HTT-SEEEESHHH------------HHCC-HHHHHHHHHH------GGGGEEEEEEEEETEEEEETTTTEEEEEEHHHH-
T ss_pred HhCCCEEEeChHH------------hhch-hHHHHHHHHc------CcccEEEEEEeeeceEEEecCccccCCcCHHHH-
Confidence 8999988772211 1111 3444443222 2211222 1211 101 1234444
Q ss_pred HHHHHhHhcCCcEEEecCC--------CCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcCCCEEeccchHH
Q 012478 244 RRSRAFADAGADVLFIDAL--------ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLI 314 (462)
Q Consensus 244 ~RakAy~eAGAD~Ifie~~--------~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~ll 314 (462)
++.+.+.|+.-+++-.+ ++.+.++++++.+. +|+. ..||-...-+..+|++.|+.-|+.+..++
T Consensus 153 --~~~~~~~g~~~ii~tdi~~dGt~~G~d~~~~~~l~~~~~-~~vi----asGGv~~~~Dl~~l~~~G~~gvivg~al~ 224 (229)
T PF00977_consen 153 --AKRLEELGAGEIILTDIDRDGTMQGPDLELLKQLAEAVN-IPVI----ASGGVRSLEDLRELKKAGIDGVIVGSALH 224 (229)
T ss_dssp --HHHHHHTT-SEEEEEETTTTTTSSS--HHHHHHHHHHHS-SEEE----EESS--SHHHHHHHHHTTECEEEESHHHH
T ss_pred --HHHHHhcCCcEEEEeeccccCCcCCCCHHHHHHHHHHcC-CCEE----EecCCCCHHHHHHHHHCCCcEEEEehHhh
Confidence 45566779998877544 45678888888774 5554 33453322356788899999999988664
No 409
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=85.52 E-value=20 Score=37.52 Aligned_cols=101 Identities=16% Similarity=0.140 Sum_probs=60.4
Q ss_pred HHHHHHhHhcCCcEEEecC---------CCCHHHHHHHHH---hCC-CCceeeeeeecCCCCCCCCHHHHHhcCCCEEec
Q 012478 243 LRRSRAFADAGADVLFIDA---------LASKEEMKAFCE---ISP-LVPKMANMLEGGGKTPILNPLELEELGFKLVAY 309 (462)
Q Consensus 243 I~RakAy~eAGAD~Ifie~---------~~s~eei~~i~~---~v~-~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~y 309 (462)
.+.++...++|||+|.+-+ +++.+.+.++.+ .+. .+| ++..||-.-..+.-+.-.||.+.|.+
T Consensus 224 ~~dA~~a~~~G~d~I~vsnhgG~~~d~~~~~~~~L~~i~~~~~~~~~~~~----vi~~GGIr~G~Dv~kalaLGA~aV~i 299 (344)
T cd02922 224 VEDAVLAAEYGVDGIVLSNHGGRQLDTAPAPIEVLLEIRKHCPEVFDKIE----VYVDGGVRRGTDVLKALCLGAKAVGL 299 (344)
T ss_pred HHHHHHHHHcCCCEEEEECCCcccCCCCCCHHHHHHHHHHHHHHhCCCce----EEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 4467788899999998754 233344444444 332 234 33334544456777888899999999
Q ss_pred cchHHHHHHH----HHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCcccHHHH
Q 012478 310 PLSLIGVSVR----AMQDALTAIKGGRIPSPGSMPSFQEIKETLGFNTYYEE 357 (462)
Q Consensus 310 p~~ll~aa~~----Am~~~l~~l~~g~~~~~~~~~s~~e~~~lvg~~~~~~~ 357 (462)
+...+.+... ++...+..|++. ++.+..++|.....++
T Consensus 300 G~~~l~~l~~~G~~gv~~~l~~l~~E----------L~~~m~l~G~~~i~~l 341 (344)
T cd02922 300 GRPFLYALSAYGEEGVEKAIQILKDE----------IETTMRLLGVTSLDQL 341 (344)
T ss_pred CHHHHHHHhhccHHHHHHHHHHHHHH----------HHHHHHHhCCCCHHHh
Confidence 9887776543 444455555432 3444455555554443
No 410
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=85.49 E-value=26 Score=37.23 Aligned_cols=147 Identities=21% Similarity=0.287 Sum_probs=95.2
Q ss_pred HHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEE
Q 012478 103 KLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGI 182 (462)
Q Consensus 103 rl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI 182 (462)
+-++++|++.+=++ .|| .+-....+.|.+..++|||||+-+-| +.+-..+++|+++|
T Consensus 49 ~~L~~aGceiVRva----------v~~------~~~a~al~~I~~~~~iPlvADIHFd~-------~lAl~a~~~G~~~i 105 (360)
T PRK00366 49 KRLARAGCEIVRVA----------VPD------MEAAAALPEIKKQLPVPLVADIHFDY-------RLALAAAEAGADAL 105 (360)
T ss_pred HHHHHcCCCEEEEc----------cCC------HHHHHhHHHHHHcCCCCEEEecCCCH-------HHHHHHHHhCCCEE
Confidence 35678899988654 333 22345567788888999999998764 33334557899999
Q ss_pred EeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhh------------cccHHHHHHHHHHhH
Q 012478 183 ILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQ------------ALSLEESLRRSRAFA 250 (462)
Q Consensus 183 ~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~------------~~gldeAI~RakAy~ 250 (462)
-|.-+ +++. ..+|+++.++++++.+..+.|=...-++. ..-++.|++-++.++
T Consensus 106 RINPG-------Nig~--------~~~~v~~vv~~ak~~~ipIRIGvN~GSL~~~~~~~yg~~t~eamveSAl~~~~~le 170 (360)
T PRK00366 106 RINPG-------NIGK--------RDERVREVVEAAKDYGIPIRIGVNAGSLEKDLLEKYGEPTPEALVESALRHAKILE 170 (360)
T ss_pred EECCC-------CCCc--------hHHHHHHHHHHHHHCCCCEEEecCCccChHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 99765 3321 13466666666665555555544433321 113577999999999
Q ss_pred hcCCcEEEecCCCC-----HHHHHHHHHhCCCCceeeeeeecC
Q 012478 251 DAGADVLFIDALAS-----KEEMKAFCEISPLVPKMANMLEGG 288 (462)
Q Consensus 251 eAGAD~Ifie~~~s-----~eei~~i~~~v~~vP~~~N~l~~~ 288 (462)
+.|=+=|.+-.-.| .+..+.+++..+ +|+=+-++|.|
T Consensus 171 ~~~f~~iviS~KsS~v~~~i~ayrlla~~~d-yPLHlGvTEAG 212 (360)
T PRK00366 171 ELGFDDIKISVKASDVQDLIAAYRLLAKRCD-YPLHLGVTEAG 212 (360)
T ss_pred HCCCCcEEEEEEcCCHHHHHHHHHHHHhcCC-CCceecccCCC
Confidence 99998888754322 334445555554 78888888864
No 411
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=85.42 E-value=14 Score=40.43 Aligned_cols=108 Identities=18% Similarity=0.124 Sum_probs=72.9
Q ss_pred CCHHHHHHHHHHHHh---hcCCcEEEeCCCCCC-CHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHH
Q 012478 133 ISYGEMVDQGQLITQ---AVSIPVIGDGDNGYG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAV 208 (462)
Q Consensus 133 vsl~Eml~~~~~I~r---a~~iPVIaD~DtGyG-~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~ 208 (462)
.+.+|+++.+....+ ....-|..++++++- ++..+.+.++.+.++|+.-|.|=|.+ |. ..++++.
T Consensus 110 ~s~~e~l~~~~~~v~~a~~~g~~v~f~~Ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTv-----G~------~~P~~~~ 178 (494)
T TIGR00973 110 MTRDEVLERAVGMVKYAKNFTDDVEFSCEDAGRTEIPFLARIVEAAINAGATTINIPDTV-----GY------ALPAEYG 178 (494)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCC-----CC------CCHHHHH
Confidence 678888886665543 335779999999876 56789999999999999999999986 43 3356777
Q ss_pred HHHHHHHHHHHhh-CCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEE
Q 012478 209 MRIKAAVDARKES-GSDIVIVARTDSRQALSLEESLRRSRAFADAGADVL 257 (462)
Q Consensus 209 ~kI~AA~~Ar~~~-g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~I 257 (462)
+.|+.+++.-... ...+=+-+..|- .-|+.-+.+..+|||+.|
T Consensus 179 ~~i~~l~~~~~~~~~v~l~~H~HND~------GlAvANalaAv~aGa~~v 222 (494)
T TIGR00973 179 NLIKGLRENVPNIDKAILSVHCHNDL------GLAVANSLAAVQNGARQV 222 (494)
T ss_pred HHHHHHHHhhccccCceEEEEeCCCC------ChHHHHHHHHHHhCCCEE
Confidence 7777766543211 011333333332 345666777778888864
No 412
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=85.36 E-value=25 Score=36.82 Aligned_cols=168 Identities=19% Similarity=0.192 Sum_probs=100.3
Q ss_pred EecccCChHHHHHH------HHhCCcEEEeccHHHHhhhccCCCC-CCCCHH---HHHHHHHHHHhhc-CCcEEEeC---
Q 012478 92 QGPACFDALSAKLV------EKSGFSFCFTSGFSISAARLALPDT-GFISYG---EMVDQGQLITQAV-SIPVIGDG--- 157 (462)
Q Consensus 92 v~p~ayDalSArl~------e~aGfdaI~vSG~avSas~lG~PD~-g~vsl~---Eml~~~~~I~ra~-~iPVIaD~--- 157 (462)
.|||.|-..--+++ .+.|.+++.+=|.. . ..|. +.-.++ =+...++.|.+.. ++-||+|.
T Consensus 51 smPg~~r~sid~l~~~~~~~~~~Gi~~v~lFgv~---~---~Kd~~gs~A~~~~g~v~~air~iK~~~pdl~vi~DVcLc 124 (322)
T PRK13384 51 TLPGISRLPESALADEIERLYALGIRYVMPFGIS---H---HKDAKGSDTWDDNGLLARMVRTIKAAVPEMMVIPDICFC 124 (322)
T ss_pred CCCCcceECHHHHHHHHHHHHHcCCCEEEEeCCC---C---CCCCCcccccCCCChHHHHHHHHHHHCCCeEEEeeeecc
Confidence 57777755433333 34699988875531 0 1221 222222 2345566676665 47788884
Q ss_pred ---CCCC------C---CHHHH---HHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhC
Q 012478 158 ---DNGY------G---NAMNV---KRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESG 222 (462)
Q Consensus 158 ---DtGy------G---~~~nv---~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g 222 (462)
++|+ | |...+ .+..-.+.+|||+-|-=-|- |+ .||.|++++.++.|
T Consensus 125 ~YT~hGHcGil~~g~i~ND~Tl~~L~~~Als~A~AGADiVAPSdM--------MD-----------GrV~aIR~aLd~~g 185 (322)
T PRK13384 125 EYTDHGHCGVLHNDEVDNDATVENLVKQSVTAAKAGADMLAPSAM--------MD-----------GQVKAIRQGLDAAG 185 (322)
T ss_pred cCCCCCceeeccCCcCccHHHHHHHHHHHHHHHHcCCCeEecccc--------cc-----------cHHHHHHHHHHHCC
Confidence 3342 1 33333 34444566899987765553 23 35666666655433
Q ss_pred -CCeEEEEecchhh-------------------------cccHHHHHHHHHHhHhcCCcEEEe-cCCCCHHHHHHHHHhC
Q 012478 223 -SDIVIVARTDSRQ-------------------------ALSLEESLRRSRAFADAGADVLFI-DALASKEEMKAFCEIS 275 (462)
Q Consensus 223 -~d~vIiARTDA~~-------------------------~~gldeAI~RakAy~eAGAD~Ifi-e~~~s~eei~~i~~~v 275 (462)
.+.-|++-+--++ ...-.|||+.+..=.+-|||+|+| |+++..+.++++.+.+
T Consensus 186 ~~~v~ImSYsaKyaS~fYGPFRdAa~Sap~gDrksYQmdp~n~~eAlre~~~D~~EGAD~lMVKPal~YLDIi~~~k~~~ 265 (322)
T PRK13384 186 FEHVAILAHSAKFASSFYGPFRAAVDCELSGDRKSYQLDYANGRQALLEALLDEAEGADILMVKPGTPYLDVLSRLRQET 265 (322)
T ss_pred CCCCceeehhHhhhhhhcchHHHHhcCCCCCCcccccCCCCCHHHHHHHHHhhHhhCCCEEEEcCCchHHHHHHHHHhcc
Confidence 2445555433221 012588999999999999999999 7889999999998876
Q ss_pred CCCceeeeee
Q 012478 276 PLVPKMANML 285 (462)
Q Consensus 276 ~~vP~~~N~l 285 (462)
. +|+.+=.+
T Consensus 266 ~-lPvaaYqV 274 (322)
T PRK13384 266 H-LPLAAYQV 274 (322)
T ss_pred C-CCEEEEEc
Confidence 4 67654333
No 413
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=85.35 E-value=36 Score=32.90 Aligned_cols=158 Identities=18% Similarity=0.127 Sum_probs=91.3
Q ss_pred HHHHHHHHhCC--CceEecccCChHHHHHHHHhCCcEEEeccHHH-Hhh--hccCCCCCCCCHHHHHHHHHHHHhhcCCc
Q 012478 78 AKSLRQILELP--GVHQGPACFDALSAKLVEKSGFSFCFTSGFSI-SAA--RLALPDTGFISYGEMVDQGQLITQAVSIP 152 (462)
Q Consensus 78 a~~LR~ll~~~--~~iv~p~ayDalSArl~e~aGfdaI~vSG~av-Sas--~lG~PD~g~vsl~Eml~~~~~I~ra~~iP 152 (462)
.+.++++.+.. -.+.+..--..--++.+.++|++.+.++-... ... .++. + ..-.++++...++.. +..++.
T Consensus 54 ~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g~~~i~i~~~~s~~~~~~~~~~-~-~~~~~~~~~~~i~~a-~~~G~~ 130 (265)
T cd03174 54 WEVLRAIRKLVPNVKLQALVRNREKGIERALEAGVDEVRIFDSASETHSRKNLNK-S-REEDLENAEEAIEAA-KEAGLE 130 (265)
T ss_pred HHHHHHHHhccCCcEEEEEccCchhhHHHHHhCCcCEEEEEEecCHHHHHHHhCC-C-HHHHHHHHHHHHHHH-HHCCCe
Confidence 34455555444 23323222224456777788999888873111 100 1111 0 001233444444443 345789
Q ss_pred EEEeCCCCC---CCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEE
Q 012478 153 VIGDGDNGY---GNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVA 229 (462)
Q Consensus 153 VIaD~DtGy---G~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiA 229 (462)
+.+...+-+ -++..+.+.++.+.++|+..|.|-|.. | +..++++.+.|+..++...+ ..+-+-.
T Consensus 131 v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt~-----G------~~~P~~v~~li~~l~~~~~~--~~~~~H~ 197 (265)
T cd03174 131 VEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDTV-----G------LATPEEVAELVKALREALPD--VPLGLHT 197 (265)
T ss_pred EEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechhc-----C------CcCHHHHHHHHHHHHHhCCC--CeEEEEe
Confidence 999996554 356788999999999999999999975 3 34456666666666654321 2333333
Q ss_pred ecchhhcccHHHHHHHHHHhHhcCCcEE
Q 012478 230 RTDSRQALSLEESLRRSRAFADAGADVL 257 (462)
Q Consensus 230 RTDA~~~~gldeAI~RakAy~eAGAD~I 257 (462)
..|- .=++.-+.+..+|||+.|
T Consensus 198 Hn~~------gla~an~laA~~aG~~~i 219 (265)
T cd03174 198 HNTL------GLAVANSLAALEAGADRV 219 (265)
T ss_pred CCCC------ChHHHHHHHHHHcCCCEE
Confidence 3332 234667888889999875
No 414
>cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown.
Probab=85.32 E-value=30 Score=37.31 Aligned_cols=127 Identities=16% Similarity=0.208 Sum_probs=79.0
Q ss_pred HHHHHhhcCCcEEEeCCCC-CC-CHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHH-HH
Q 012478 142 GQLITQAVSIPVIGDGDNG-YG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVD-AR 218 (462)
Q Consensus 142 ~~~I~ra~~iPVIaD~DtG-yG-~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~-Ar 218 (462)
+|++....+-||+.=+=-- -| ++.+..+.+.++...|++=|| .|.. ...++..|.+|-+..+..+++ +.
T Consensus 134 ~R~llgv~~RPLigtiiKP~~Glsp~~~a~~~y~~~~GGvD~IK-DDE~-------l~~q~~~p~~eRv~~~~~a~~~a~ 205 (406)
T cd08207 134 TRRLTGVEDRPLIGTIIKPSVGLTPEETAALVRQLAAAGIDFIK-DDEL-------LANPPYSPLDERVRAVMRVINDHA 205 (406)
T ss_pred HHHHhCCCCCceEEEecccccCCCHHHHHHHHHHHHhCCCCccc-cccc-------CCCCCCCcHHHHHHHHHHHHHHHH
Confidence 5667777789998876554 35 578888889999999998876 2432 223445566554444333332 23
Q ss_pred HhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEecCCCC-HHHHHHHHHhCCCCcee
Q 012478 219 KESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALAS-KEEMKAFCEISPLVPKM 281 (462)
Q Consensus 219 ~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~~~s-~eei~~i~~~v~~vP~~ 281 (462)
++.|...+-.... ..+.+|.++|++...++|++++++.-... ..-++.+.+.. .+|+.
T Consensus 206 ~eTG~~~~y~~Ni----T~~~~em~~ra~~~~~~G~~~~mv~~~~~G~~~l~~l~~~~-~l~Ih 264 (406)
T cd08207 206 QRTGRKVMYAFNI----TDDIDEMRRNHDLVVEAGGTCVMVSLNSVGLSGLAALRRHS-QLPIH 264 (406)
T ss_pred HhhCCcceEEEec----CCCHHHHHHHHHHHHHhCCCeEEEeccccchHHHHHHHhcC-CceEE
Confidence 3444322222221 11368999999999999999999865433 34566666643 35544
No 415
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=85.23 E-value=13 Score=41.07 Aligned_cols=109 Identities=15% Similarity=0.052 Sum_probs=68.7
Q ss_pred CCHHHHHHHHHHHHhh---cCCc-EEEeCCCCC-CCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHH
Q 012478 133 ISYGEMVDQGQLITQA---VSIP-VIGDGDNGY-GNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEA 207 (462)
Q Consensus 133 vsl~Eml~~~~~I~ra---~~iP-VIaD~DtGy-G~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~ 207 (462)
.+.+|+++.+....+. .+.. +.+.+++++ -+..-+.+.++.++++||..|.|-|.+ |. ..++++
T Consensus 202 ~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~EDa~Rtd~efl~~~~~~a~~~Gad~I~l~DTv-----G~------~tP~~v 270 (503)
T PLN03228 202 KTKEEVIEMAVSSIRYAKSLGFHDIQFGCEDGGRSDKEFLCKILGEAIKAGATSVGIADTV-----GI------NMPHEF 270 (503)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCceEEeccccccccCHHHHHHHHHHHHhcCCCEEEEecCC-----CC------CCHHHH
Confidence 4677777766654432 3453 778897764 466778999999999999999999986 33 334566
Q ss_pred HHHHHHHHHHHHhh-CCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEE
Q 012478 208 VMRIKAAVDARKES-GSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLF 258 (462)
Q Consensus 208 ~~kI~AA~~Ar~~~-g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~If 258 (462)
.+.|+++++.-... +..+-+-+..| +--|+.-+.+..+|||+.|=
T Consensus 271 ~~lV~~l~~~~~~~~~i~I~~H~HND------~GlAvANslaAi~aGa~~Vd 316 (503)
T PLN03228 271 GELVTYVKANTPGIDDIVFSVHCHND------LGLATANTIAGICAGARQVE 316 (503)
T ss_pred HHHHHHHHHHhccccCceeEecccCC------cChHHHHHHHHHHhCCCEEE
Confidence 66776665542210 01122223322 23445666777788888763
No 416
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=85.11 E-value=4 Score=43.26 Aligned_cols=93 Identities=18% Similarity=0.147 Sum_probs=59.9
Q ss_pred hHHHHHHHHhCCCceEecccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEe
Q 012478 77 PAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGD 156 (462)
Q Consensus 77 ~a~~LR~ll~~~~~iv~p~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD 156 (462)
..+.||+.- +.++++=|+-+.-.|+.+.++|+|+|.+|+.+- ...|...-+++-+.+..+.+. ..+|||+|
T Consensus 215 di~wlr~~~--~~PiivKgV~~~~dA~~a~~~Gvd~I~VsnhGG-----rqld~~~~t~~~L~ei~~av~--~~~~vi~d 285 (367)
T PLN02493 215 DVQWLQTIT--KLPILVKGVLTGEDARIAIQAGAAGIIVSNHGA-----RQLDYVPATISALEEVVKATQ--GRIPVFLD 285 (367)
T ss_pred HHHHHHhcc--CCCEEeecCCCHHHHHHHHHcCCCEEEECCCCC-----CCCCCchhHHHHHHHHHHHhC--CCCeEEEe
Confidence 344555532 468999999999999999999999999997662 234544333333332222221 24999988
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCccEEEe
Q 012478 157 GDNGYGNAMNVKRTVKGYIKAGFAGIIL 184 (462)
Q Consensus 157 ~DtGyG~~~nv~rtVk~l~~AGaaGI~I 184 (462)
. |.-+..++. |.+ ..||.+|.|
T Consensus 286 G--GIr~G~Dv~---KAL-ALGA~aV~i 307 (367)
T PLN02493 286 G--GVRRGTDVF---KAL-ALGASGIFI 307 (367)
T ss_pred C--CcCcHHHHH---HHH-HcCCCEEEE
Confidence 3 333333444 333 469999988
No 417
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=85.09 E-value=20 Score=36.94 Aligned_cols=146 Identities=16% Similarity=0.221 Sum_probs=83.1
Q ss_pred HHHHHHHHhCCCceEecccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHH------HHHHHHHhhc-C
Q 012478 78 AKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMV------DQGQLITQAV-S 150 (462)
Q Consensus 78 a~~LR~ll~~~~~iv~p~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml------~~~~~I~ra~-~ 150 (462)
+.++.+...+++..++-+=--....|.+++. |++++| +.. -++|+.|.-++--+.+. ..+++..+.. .
T Consensus 125 t~~~v~~~~~~~~~i~~TRKT~Pg~R~l~k~---AV~~GG-G~~-HR~gLsd~ilIkdNHi~~~G~i~~ai~~~r~~~~~ 199 (289)
T PRK07896 125 TAAWVDAVAGTKAKIRDTRKTLPGLRALQKY---AVRCGG-GVN-HRMGLGDAALIKDNHVAAAGSVVAALRAVRAAAPD 199 (289)
T ss_pred HHHHHHHhcCCCeEEEecCCCCCcchHHHHH---HHHhCC-Ccc-ccCCCcceeeecHHHHHHhCcHHHHHHHHHHhCCC
Confidence 3445555544444444444445556777765 777787 443 37899898777655432 2233333322 3
Q ss_pred CcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEe
Q 012478 151 IPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVAR 230 (462)
Q Consensus 151 iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiAR 230 (462)
.||.+-.|+ ..+ +.+..++|++.|.++.- +++++ +.++...+..++...+-
T Consensus 200 ~kIeVEv~t----l~e----a~eal~~gaDiI~LDnm---------------~~e~v----k~av~~~~~~~~~v~ie-- 250 (289)
T PRK07896 200 LPCEVEVDS----LEQ----LDEVLAEGAELVLLDNF---------------PVWQT----QEAVQRRDARAPTVLLE-- 250 (289)
T ss_pred CCEEEEcCC----HHH----HHHHHHcCCCEEEeCCC---------------CHHHH----HHHHHHHhccCCCEEEE--
Confidence 778888764 222 33456899999999543 23433 33333222112343332
Q ss_pred cchhhcccHHHHHHHHHHhHhcCCcEEEecCCC
Q 012478 231 TDSRQALSLEESLRRSRAFADAGADVLFIDALA 263 (462)
Q Consensus 231 TDA~~~~gldeAI~RakAy~eAGAD~Ifie~~~ 263 (462)
+. -++. ++...+|++.|+|.|.+-++.
T Consensus 251 --aS--GGI~--~~ni~~yA~tGvD~Is~galt 277 (289)
T PRK07896 251 --SS--GGLT--LDTAAAYAETGVDYLAVGALT 277 (289)
T ss_pred --EE--CCCC--HHHHHHHHhcCCCEEEeChhh
Confidence 22 2333 568899999999999986653
No 418
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=85.06 E-value=19 Score=36.21 Aligned_cols=110 Identities=20% Similarity=0.236 Sum_probs=65.5
Q ss_pred cEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCC-C--CCCCCCCCCCcc-----------cCHHHHHHHHHHHHHH
Q 012478 152 PVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQV-S--PKGCGHTRGRKV-----------VSREEAVMRIKAAVDA 217 (462)
Q Consensus 152 PVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~-~--PKrCGH~~gk~L-----------vp~ee~~~kI~AA~~A 217 (462)
-+|.=+-.||-+.....+.++.+++.||+.|-| +. + |. .+|..+ +..++..+-++..++
T Consensus 13 ~li~yi~aG~P~~~~~~~~~~~l~~~Gad~iEl--GiPfSDP~----aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~- 85 (258)
T PRK13111 13 ALIPYITAGDPDLETSLEIIKALVEAGADIIEL--GIPFSDPV----ADGPVIQAASLRALAAGVTLADVFELVREIRE- 85 (258)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEE--CCCCCCCc----ccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh-
Confidence 466666678888888888899999999999866 33 2 21 122111 122233333333321
Q ss_pred HHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEecCCCCHHHHHHHHH
Q 012478 218 RKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCE 273 (462)
Q Consensus 218 r~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~ 273 (462)
+..+.++++..=-.-.-..|+|.-+++|+ ++|+|.+.++-++- ||++.+.+
T Consensus 86 -~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~---~aGvdGviipDLp~-ee~~~~~~ 136 (258)
T PRK13111 86 -KDPTIPIVLMTYYNPIFQYGVERFAADAA---EAGVDGLIIPDLPP-EEAEELRA 136 (258)
T ss_pred -cCCCCCEEEEecccHHhhcCHHHHHHHHH---HcCCcEEEECCCCH-HHHHHHHH
Confidence 11223555554434344568887766654 78999999988864 56665553
No 419
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=84.98 E-value=41 Score=32.98 Aligned_cols=145 Identities=22% Similarity=0.228 Sum_probs=81.9
Q ss_pred HHHHHhhcCCcEEEeCCCCCCC-HHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHh
Q 012478 142 GQLITQAVSIPVIGDGDNGYGN-AMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKE 220 (462)
Q Consensus 142 ~~~I~ra~~iPVIaD~DtGyG~-~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~ 220 (462)
++.+.+. +.++++|.=.. + +.++.+.++.+.++|++.+.+=-.. | .+.|++++++.++
T Consensus 46 i~~l~~~-~~~i~~D~Kl~--Di~~t~~~~i~~~~~~gad~itvH~~a---------g---------~~~i~~~~~~~~~ 104 (230)
T PRK00230 46 VRELKQR-GFKVFLDLKLH--DIPNTVAKAVRALAKLGVDMVNVHASG---------G---------PRMMKAAREALEP 104 (230)
T ss_pred HHHHHhc-CCCEEEEeehh--hccccHHHHHHHHHHcCCCEEEEcccC---------C---------HHHHHHHHHHhhc
Confidence 4444443 57899997763 2 2356777888899999999883321 1 2356777766543
Q ss_pred hC-C-CeEEEEecch----hh----cccHHHHH-HHHHHhHhcCCcEEEecCCCCHHHHHHHHHhCCCCceeeeeeecCC
Q 012478 221 SG-S-DIVIVARTDS----RQ----ALSLEESL-RRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGG 289 (462)
Q Consensus 221 ~g-~-d~vIiARTDA----~~----~~gldeAI-~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~l~~~g 289 (462)
.+ + -+.|.--|.- .. ..++++.+ .+++...++|+|.+..... +...+.+..+ +.+.-+++ |
T Consensus 105 ~~~~~~~~V~~lts~~~~~l~~~~~~~~~~~~v~~~a~~a~~~g~dgvv~~~~----~~~~ir~~~~--~~~~~v~p--G 176 (230)
T PRK00230 105 KSRPLLIAVTVLTSMDEEDLAELGINLSLEEQVLRLAKLAQEAGLDGVVCSAQ----EAAAIREATG--PDFLLVTP--G 176 (230)
T ss_pred cCCCeEEEEEECCCCCHHHHHhCcCCCCHHHHHHHHHHHHHHcCCeEEEeChH----HHHHHHhhcC--CceEEEcC--C
Confidence 21 1 1222223321 10 11234444 6677778999999987532 2333333322 12222222 2
Q ss_pred CCCC----------CCHHHHHhcCCCEEeccchHHH
Q 012478 290 KTPI----------LNPLELEELGFKLVAYPLSLIG 315 (462)
Q Consensus 290 ~tP~----------ls~~eL~~lGv~~V~yp~~ll~ 315 (462)
-.|. .++.+.-+.|...+++|-..+.
T Consensus 177 I~~~g~~~~dq~~~~~~~~ai~~Gad~iVvGR~I~~ 212 (230)
T PRK00230 177 IRPAGSDAGDQKRVMTPAQAIAAGSDYIVVGRPITQ 212 (230)
T ss_pred cCCCCCCcchHHHHhCHHHHHHcCCCEEEECCcccC
Confidence 2221 2688888999999999887654
No 420
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=84.98 E-value=24 Score=34.18 Aligned_cols=143 Identities=24% Similarity=0.253 Sum_probs=87.0
Q ss_pred CcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCC------CCCCCCCCC------cccCHHHHHHHHHHHHHHH
Q 012478 151 IPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSP------KGCGHTRGR------KVVSREEAVMRIKAAVDAR 218 (462)
Q Consensus 151 iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~P------KrCGH~~gk------~Lvp~ee~~~kI~AA~~Ar 218 (462)
+||+-+. +.+++.+.++.+.+.|+..+.|-..... +-|-+.+.. .++..+ .++.++++
T Consensus 13 ~~v~r~~-----~~~~~~~~~~a~~~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~----~~~~a~~a- 82 (206)
T PRK09140 13 IAILRGI-----TPDEALAHVGALIEAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPE----QVDRLADA- 82 (206)
T ss_pred EEEEeCC-----CHHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHH----HHHHHHHc-
Confidence 5555442 5678889999999999999999655321 001010000 133433 22333333
Q ss_pred HhhCCCeEEEEecchhh--------------cccHHHHHHHHHHhHhcCCcEEEe-c-CCCCHHHHHHHHHhCC-CCcee
Q 012478 219 KESGSDIVIVARTDSRQ--------------ALSLEESLRRSRAFADAGADVLFI-D-ALASKEEMKAFCEISP-LVPKM 281 (462)
Q Consensus 219 ~~~g~d~vIiARTDA~~--------------~~gldeAI~RakAy~eAGAD~Ifi-e-~~~s~eei~~i~~~v~-~vP~~ 281 (462)
|.+|++..-.|... ....+| +....++|||.|-+ + ..-..+.++.+.+.++ .+|.+
T Consensus 83 ---GA~fivsp~~~~~v~~~~~~~~~~~~~G~~t~~E----~~~A~~~Gad~vk~Fpa~~~G~~~l~~l~~~~~~~ipvv 155 (206)
T PRK09140 83 ---GGRLIVTPNTDPEVIRRAVALGMVVMPGVATPTE----AFAALRAGAQALKLFPASQLGPAGIKALRAVLPPDVPVF 155 (206)
T ss_pred ---CCCEEECCCCCHHHHHHHHHCCCcEEcccCCHHH----HHHHHHcCCCEEEECCCCCCCHHHHHHHHhhcCCCCeEE
Confidence 66888887766531 123343 44556799999854 2 2235788898888775 34543
Q ss_pred eeeeecCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 012478 282 ANMLEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (462)
Q Consensus 282 ~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~ll~ 315 (462)
.-||-++ -...++.+.|+..|.....++.
T Consensus 156 ----aiGGI~~-~n~~~~~~aGa~~vav~s~l~~ 184 (206)
T PRK09140 156 ----AVGGVTP-ENLAPYLAAGAAGFGLGSALYR 184 (206)
T ss_pred ----EECCCCH-HHHHHHHHCCCeEEEEehHhcc
Confidence 3345433 3568999999999998887765
No 421
>cd03318 MLE Muconate Lactonizing Enzyme (MLE), an homooctameric enzyme, catalyses the conversion of cis,cis-muconate (CCM) to muconolactone (ML) in the catechol branch of the beta-ketoadipate pathway. This pathway is used in soil microbes to breakdown lignin-derived aromatics, catechol and protocatechuate, to citric acid cycle intermediates. Some bacterial species are also capable of dehalogenating chloroaromatic compounds by the action of chloromuconate lactonizing enzymes (Cl-MLEs). MLEs are members of the enolase superfamily characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and that is stabilized by coordination to the essential Mg2+ ion.
Probab=84.96 E-value=30 Score=35.73 Aligned_cols=100 Identities=20% Similarity=0.272 Sum_probs=70.1
Q ss_pred CCCHHHHHHHHHHHHHhC-ccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccH
Q 012478 161 YGNAMNVKRTVKGYIKAG-FAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSL 239 (462)
Q Consensus 161 yG~~~nv~rtVk~l~~AG-aaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gl 239 (462)
.+++......++++.+.| ...+||-- |. .+.++-+++|++++++. |+++.| +-|+-....+
T Consensus 140 ~~~~~~~~~~~~~~~~~G~f~~~KiKv-------g~------~~~~~d~~~v~avr~~~---g~~~~l--~iDaN~~~~~ 201 (365)
T cd03318 140 SGDTERDIAEAEEMLEAGRHRRFKLKM-------GA------RPPADDLAHVEAIAKAL---GDRASV--RVDVNQAWDE 201 (365)
T ss_pred CCCHHHHHHHHHHHHhCCCceEEEEEe-------CC------CChHHHHHHHHHHHHHc---CCCcEE--EEECCCCCCH
Confidence 345555556677777888 99999932 21 13455578888887764 455543 5788777889
Q ss_pred HHHHHHHHHhHhcCCcEEEecCCC---CHHHHHHHHHhCCCCcee
Q 012478 240 EESLRRSRAFADAGADVLFIDALA---SKEEMKAFCEISPLVPKM 281 (462)
Q Consensus 240 deAI~RakAy~eAGAD~Ifie~~~---s~eei~~i~~~v~~vP~~ 281 (462)
++|++-++++.+.| ..|+|-+- +.+.++++++..+ +|+.
T Consensus 202 ~~A~~~~~~l~~~~--~~~iEeP~~~~~~~~~~~l~~~~~-~pia 243 (365)
T cd03318 202 STAIRALPRLEAAG--VELIEQPVPRENLDGLARLRSRNR-VPIM 243 (365)
T ss_pred HHHHHHHHHHHhcC--cceeeCCCCcccHHHHHHHHhhcC-CCEE
Confidence 99999999999986 56888653 5567888888754 5654
No 422
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=84.95 E-value=33 Score=34.44 Aligned_cols=103 Identities=21% Similarity=0.248 Sum_probs=62.1
Q ss_pred CHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHH
Q 012478 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (462)
Q Consensus 163 ~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeA 242 (462)
+...+.+.+++++++||+-|=|-.+. .-.|-..++.++-.+|+.-++++.++. .+..| =-|.... ++
T Consensus 22 ~~~~~~~~a~~~~~~GAdiIDIG~~s------t~p~~~~i~~~~E~~rl~~~v~~i~~~-~~~pl--SIDT~~~----~v 88 (257)
T cd00739 22 SLDKAVAHAEKMIAEGADIIDIGGES------TRPGADPVSVEEELERVIPVLEALRGE-LDVLI--SVDTFRA----EV 88 (257)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCc------CCCCCCCCCHHHHHHHHHHHHHHHHhc-CCCcE--EEeCCCH----HH
Confidence 45678888899999999999884432 223445667777778877666665432 13333 2244332 33
Q ss_pred HHHHHHhHhcCCcEEE-ecCCCCHHHHHHHHHhCCCCceee
Q 012478 243 LRRSRAFADAGADVLF-IDALASKEEMKAFCEISPLVPKMA 282 (462)
Q Consensus 243 I~RakAy~eAGAD~If-ie~~~s~eei~~i~~~v~~vP~~~ 282 (462)
++.|. ++|+|+|- +.+....+++..+++... .+..+
T Consensus 89 ~e~al---~~G~~iINdisg~~~~~~~~~l~~~~~-~~vV~ 125 (257)
T cd00739 89 ARAAL---EAGADIINDVSGGSDDPAMLEVAAEYG-APLVL 125 (257)
T ss_pred HHHHH---HhCCCEEEeCCCCCCChHHHHHHHHcC-CCEEE
Confidence 33333 35999887 566553256777777653 45443
No 423
>PRK08645 bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase protein; Reviewed
Probab=84.85 E-value=45 Score=37.50 Aligned_cols=158 Identities=21% Similarity=0.263 Sum_probs=0.0
Q ss_pred HhCCcEEEeccHHHHhhhc---cCCCCCCCCHHHHHHHHHHHHhhcC---CcEEEeC-CCCC------CCHHHHHHH---
Q 012478 107 KSGFSFCFTSGFSISAARL---ALPDTGFISYGEMVDQGQLITQAVS---IPVIGDG-DNGY------GNAMNVKRT--- 170 (462)
Q Consensus 107 ~aGfdaI~vSG~avSas~l---G~PD~g~vsl~Eml~~~~~I~ra~~---iPVIaD~-DtGy------G~~~nv~rt--- 170 (462)
++|.|.|.+..|+.+...+ |+.+. ..++...+-.+++.+- +-|.+++ +.|. -+.+.+.+.
T Consensus 54 ~AGAdvi~TnTy~as~~~l~~~g~~~~----~~~l~~~av~lAr~a~~~~~~VagsiGP~g~~~~~~~~~~~~~~~~~~~ 129 (612)
T PRK08645 54 EAGADVIQTNTFGANRIKLKRYGLEDK----VKEINRAAVRLAREAAGDDVYVAGTIGPIGGRGPLGDISLEEIRREFRE 129 (612)
T ss_pred HhCCCEEecCcccccHHHHHhcCchHH----HHHHHHHHHHHHHHHhcCCCeEEEeCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_pred -HHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhC-CCeEEEEecchhh----cccHHHHHH
Q 012478 171 -VKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESG-SDIVIVARTDSRQ----ALSLEESLR 244 (462)
Q Consensus 171 -Vk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g-~d~vIiARTDA~~----~~gldeAI~ 244 (462)
++.|.++||+.+-+|-... ..-+++++++.++.+ .++++--..+... ...++++++
T Consensus 130 ~~~~l~~~gvD~l~~ET~~~------------------~~Ea~a~~~a~~~~~~~p~~~Sf~~~~~g~l~~G~~~~~~~~ 191 (612)
T PRK08645 130 QIDALLEEGVDGLLLETFYD------------------LEELLLALEAAREKTDLPIIAQVAFHEDGVTQNGTSLEEALK 191 (612)
T ss_pred HHHHHHhcCCCEEEEEccCC------------------HHHHHHHHHHHHHhCCCcEEEEEEECCCCeeCCCCCHHHHHH
Q ss_pred HHHHhHhcCCcEEEecCCCCHHHHHHHHHhCCC-CceeeeeeecCC
Q 012478 245 RSRAFADAGADVLFIDALASKEEMKAFCEISPL-VPKMANMLEGGG 289 (462)
Q Consensus 245 RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~-vP~~~N~l~~~g 289 (462)
.+ .+.|+++|-+-|...++.+..+.+.+.. +..++-+....|
T Consensus 192 ~~---~~~~~~avGiNC~~~p~~~~~~l~~l~~~~~~pl~vypNaG 234 (612)
T PRK08645 192 EL---VAAGADVVGLNCGLGPYHMLEALERIPIPENAPLSAYPNAG 234 (612)
T ss_pred HH---HhCCCCEEEecCCCCHHHHHHHHHHHHhccCceEEEEECCC
No 424
>PRK07534 methionine synthase I; Validated
Probab=84.82 E-value=10 Score=39.58 Aligned_cols=148 Identities=19% Similarity=0.269 Sum_probs=78.1
Q ss_pred CHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHH----HHHHhhCCCeEEEEecchhhc--
Q 012478 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAV----DARKESGSDIVIVARTDSRQA-- 236 (462)
Q Consensus 163 ~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~----~Ar~~~g~d~vIiARTDA~~~-- 236 (462)
+++.|.+.=+.|++|||.-|. -. ++--.+-++.-. -..++..+-+++++ +|+++.+.+.+|.+=---...
T Consensus 43 ~Pe~V~~vH~~Yl~AGAdiI~-Tn-Ty~as~~~l~~~--~~~~~~~~l~~~av~lAr~a~~~~~~~~~VaGsIGP~g~~l 118 (336)
T PRK07534 43 HPDNITALHQGFVDAGSDIIL-TN-SFGGTAARLKLH--DAQDRVHELNRAAAEIAREVADKAGRKVIVAGSVGPTGEIM 118 (336)
T ss_pred CHHHHHHHHHHHHHhcCCEEE-ec-CcccCHHHHHhc--CcHHHHHHHHHHHHHHHHHHHHhcCCccEEEEecCCCcccc
Confidence 466677777888999987775 22 221000010000 02233333334443 333322224445443222111
Q ss_pred -----ccHHH----HHHHHHHhHhcCCcEEEecCCCCHHHHHHHHHhCC--CCceeeeeeec-CCCCC-CCCH----HHH
Q 012478 237 -----LSLEE----SLRRSRAFADAGADVLFIDALASKEEMKAFCEISP--LVPKMANMLEG-GGKTP-ILNP----LEL 299 (462)
Q Consensus 237 -----~glde----AI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~--~vP~~~N~l~~-~g~tP-~ls~----~eL 299 (462)
...++ --+++.++.++|+|+|++|-+++.+|++.+.+.+. ..|.++.+.-. .|++. ..++ +.+
T Consensus 119 ~~~~~~~~~e~~~~~~~qi~~l~~~gvD~l~~ET~p~l~E~~a~~~~~~~~~~Pv~vSft~~~~g~l~~G~~~~~~~~~~ 198 (336)
T PRK07534 119 EPMGALTHALAVEAFHEQAEGLKAGGADVLWVETISAPEEIRAAAEAAKLAGMPWCGTMSFDTAGRTMMGLTPADLADLV 198 (336)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeccCCHHHHHHHHHHHHHcCCeEEEEEEECCCCeeCCCCcHHHHHHHH
Confidence 12232 33568889999999999999999999998886542 46887776642 23222 2333 333
Q ss_pred HhcCCCEEeccchHH
Q 012478 300 EELGFKLVAYPLSLI 314 (462)
Q Consensus 300 ~~lGv~~V~yp~~ll 314 (462)
.++|.....++..+-
T Consensus 199 ~~~~~~~~avGvNC~ 213 (336)
T PRK07534 199 EKLGEPPLAFGANCG 213 (336)
T ss_pred HhcCCCceEEEecCC
Confidence 445654455555544
No 425
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=84.78 E-value=1.9 Score=43.22 Aligned_cols=117 Identities=19% Similarity=0.290 Sum_probs=66.4
Q ss_pred HHHHHHHHHHhhcCCcEEEeCCCCCCCH-HH-------HHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHH
Q 012478 137 EMVDQGQLITQAVSIPVIGDGDNGYGNA-MN-------VKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAV 208 (462)
Q Consensus 137 Eml~~~~~I~ra~~iPVIaD~DtGyG~~-~n-------v~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~ 208 (462)
+.+..--.+++..++++.- |+. .. +.+-++...+.|..+|-|-|+.. -+|.++..
T Consensus 54 ~~l~eki~l~~~~gV~v~~------GGtl~E~a~~q~~~~~yl~~~k~lGf~~IEiSdGti-----------~l~~~~r~ 116 (244)
T PF02679_consen 54 EILKEKIDLAHSHGVYVYP------GGTLFEVAYQQGKFDEYLEECKELGFDAIEISDGTI-----------DLPEEERL 116 (244)
T ss_dssp HHHHHHHHHHHCTT-EEEE-------HHHHHHHHHTT-HHHHHHHHHHCT-SEEEE--SSS--------------HHHHH
T ss_pred HHHHHHHHHHHHcCCeEeC------CcHHHHHHHhcChHHHHHHHHHHcCCCEEEecCCce-----------eCCHHHHH
Confidence 4444444556667787753 332 22 33345666679999999999852 24555444
Q ss_pred HHHHHHHHHHHhhCCCeEEEE---ecchhh--cccHHHHHHHHHHhHhcCCcEEEecCCC-------------CHHHHHH
Q 012478 209 MRIKAAVDARKESGSDIVIVA---RTDSRQ--ALSLEESLRRSRAFADAGADVLFIDALA-------------SKEEMKA 270 (462)
Q Consensus 209 ~kI~AA~~Ar~~~g~d~vIiA---RTDA~~--~~gldeAI~RakAy~eAGAD~Ifie~~~-------------s~eei~~ 270 (462)
.-| +.+++ .+|.++. +.|... ..+.++.|+++++..+||||.|.+|+-. ..+.+.+
T Consensus 117 ~~I---~~~~~---~Gf~v~~EvG~K~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEarEsG~~Gi~~~~g~~r~d~v~~ 190 (244)
T PF02679_consen 117 RLI---RKAKE---EGFKVLSEVGKKDPESDFSLDPEELIEQAKRDLEAGADKVIIEARESGKGGIYDNDGEVRTDLVEK 190 (244)
T ss_dssp HHH---HHHCC---TTSEEEEEES-SSHHHHTT--CCHHHHHHHHHHHHTECEEEE--TTT--STTB-TTS-B-HHHHHH
T ss_pred HHH---HHHHH---CCCEEeecccCCCchhcccCCHHHHHHHHHHHHHCCCCEEEEeeeccCCCCccCCCCCccHHHHHH
Confidence 444 44443 3577764 344432 2346789999999999999999999762 2567888
Q ss_pred HHHhCC
Q 012478 271 FCEISP 276 (462)
Q Consensus 271 i~~~v~ 276 (462)
|.+.++
T Consensus 191 i~~~~~ 196 (244)
T PF02679_consen 191 IIERLG 196 (244)
T ss_dssp HHTTS-
T ss_pred HHHhCC
Confidence 887765
No 426
>TIGR02810 agaZ_gatZ D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit. Aldolases specific for D-tagatose-bisphosphate occur in distinct pathways in Escherichia coli and other bacteria, one for the degradation of galactitol (formerly dulcitol) and one for degradation of N-acetyl-galactosamine and D-galactosamine. This family represents a protein of both systems that behaves as a non-catalytic subunit of D-tagatose-bisphosphate aldolase, required both for full activity and for good stability of the aldolase. Note that members of this protein family appear in public databases annotated as putative tagatose 6-phosphate kinases, possibly in error.
Probab=84.64 E-value=65 Score=35.01 Aligned_cols=209 Identities=19% Similarity=0.257 Sum_probs=125.8
Q ss_pred HHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCc---EEEeCCCCCC----C--HH----HHHH
Q 012478 103 KLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIP---VIGDGDNGYG----N--AM----NVKR 169 (462)
Q Consensus 103 rl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iP---VIaD~DtGyG----~--~~----nv~r 169 (462)
+.+.+.|+..++-++.--....=|| +| ++-.++.+.+..|++..+.| ||.=.|++-= + .. ++.+
T Consensus 31 ~~a~~~~~pvLiEAT~NQVnq~GGY--TG-mtP~dF~~~V~~iA~~~gf~~~~iiLggDHlGPn~Wq~lpa~eAM~~A~~ 107 (420)
T TIGR02810 31 RRARASGTPVLIEATSNQVNQFGGY--TG-MTPADFRDFVETIADRIGFPRDRLILGGDHLGPNPWQHLPADEAMAKAAA 107 (420)
T ss_pred HHHhhcCCcEEEEeccccccccCCc--CC-CCHHHHHHHHHHHHHHcCCChhcEEeecCCCCCccccCCCHHHHHHHHHH
Confidence 3344568888887743333322367 44 78889999999999988766 6899999621 1 22 4556
Q ss_pred HHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHH----HHHH-hhC-CCe-EEEEecch---------
Q 012478 170 TVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAV----DARK-ESG-SDI-VIVARTDS--------- 233 (462)
Q Consensus 170 tVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~----~Ar~-~~g-~d~-vIiARTDA--------- 233 (462)
.++.+++||..=|||.-.. .|-- .+ ..+|.+..++|-.... ++++ ..| ++. .|| =|+.
T Consensus 108 li~ayV~AGF~kIHLD~Sm---~ca~-d~-~~L~d~~vAeRaa~L~~~aE~~~~~~~~~~~~vYvI-GTEvP~pGGa~~~ 181 (420)
T TIGR02810 108 LVDAYVEAGFTKIHLDASM---GCAG-DP-APLDDATVAERAARLCAVAEAAATDRRGETKPVYVI-GTEVPVPGGALEA 181 (420)
T ss_pred HHHHHHHcCCceEEecCCC---CccC-CC-ccCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEe-ccccCCCCchhhh
Confidence 6788889999999994432 3532 12 4567676666644222 2333 212 223 333 2333
Q ss_pred ------hhcccHHHHHHHH-HHhHhcCCcE-----EE--e-cCC---------CCHHHHHHHHHhCCCCceeeeeeecCC
Q 012478 234 ------RQALSLEESLRRS-RAFADAGADV-----LF--I-DAL---------ASKEEMKAFCEISPLVPKMANMLEGGG 289 (462)
Q Consensus 234 ------~~~~gldeAI~Ra-kAy~eAGAD~-----If--i-e~~---------~s~eei~~i~~~v~~vP~~~N~l~~~g 289 (462)
...+.++..|+.- ++|.++|-+. |+ + +|+ -+.+..+.+.+.+...|.+ +.|. -
T Consensus 182 ~~~~~vTs~e~~~~ti~~h~~af~~~GL~~aw~rvi~~VVQpGvef~~~~V~~y~~~~A~~Ls~~~~~~~~l--vfEa-H 258 (420)
T TIGR02810 182 LQTLAVTTPEAARATLRAHRKAFAARGLEDAWPRVIALVVQPGVEFDHHNVIHYQPERAQALSQVIDNTPGL--VFEA-H 258 (420)
T ss_pred ccccCCCCHHHHHHHHHHHHHHHHHcCchhhhccceEEEecCCeeECCCceeecCHHHHHHHHHHHHhCCCc--eeec-C
Confidence 1123467788887 8899999553 22 2 343 1345555555544333433 3453 3
Q ss_pred CCCCCCHH---HHHhcCCCEEeccchHHHHHHHHHHH
Q 012478 290 KTPILNPL---ELEELGFKLVAYPLSLIGVSVRAMQD 323 (462)
Q Consensus 290 ~tP~ls~~---eL~~lGv~~V~yp~~ll~aa~~Am~~ 323 (462)
.|.+.+.. +|-+.||...-.|+.+-++...|+-.
T Consensus 259 STDYQt~~al~~lv~dgfaiLKVGPalTfalreAlfa 295 (420)
T TIGR02810 259 STDYQTPAALRALVRDHFAILKVGPALTFALREALFA 295 (420)
T ss_pred CccCCCHHHHHHHHhcCceeeeechhHhHHHHHHHHH
Confidence 46666654 45667999999999988776666644
No 427
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=84.63 E-value=6.2 Score=43.39 Aligned_cols=125 Identities=19% Similarity=0.185 Sum_probs=72.2
Q ss_pred HHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHH
Q 012478 167 VKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRS 246 (462)
Q Consensus 167 v~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~Ra 246 (462)
+.+..+.|.+.++..+-+-|.. |+.-| +++..++..+..--..+.+.. ..++| ++.- +.+++++|+
T Consensus 182 l~eAl~lM~e~~i~~LPVVD~~-----g~LvG--IIT~~Dilk~~~~P~a~~d~~-grL~V-~~av-----~~~~~~~ra 247 (502)
T PRK07107 182 LKEANDIIWDHKLNTLPIVDKN-----GNLVY--LVFRKDYDSHKENPLELLDSS-KRYVV-GAGI-----NTRDYAERV 247 (502)
T ss_pred HHHHHHHHHHcCCCEEEEEcCC-----CeEEE--EEEhHHHHhcccChhhhhhhc-cCeee-eecc-----ChhhHHHHH
Confidence 4556677788888888776642 22211 555555544321111122221 23433 4422 235789999
Q ss_pred HHhHhcCCcEEEecCCCC-----HHHHHHHHHhCCCCceeeeeeecCCCCCCCC---HHHHHhcCCCEEeccch
Q 012478 247 RAFADAGADVLFIDALAS-----KEEMKAFCEISPLVPKMANMLEGGGKTPILN---PLELEELGFKLVAYPLS 312 (462)
Q Consensus 247 kAy~eAGAD~Ifie~~~s-----~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls---~~eL~~lGv~~V~yp~~ 312 (462)
+++.++|+|.|+|..-+. .+.++++.+.+|. + +.+.. |. .++ .++|.++|+..+..+++
T Consensus 248 ~~Lv~aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~-~--~~V~a--Gn--V~t~e~a~~li~aGAd~I~vg~g 314 (502)
T PRK07107 248 PALVEAGADVLCIDSSEGYSEWQKRTLDWIREKYGD-S--VKVGA--GN--VVDREGFRYLAEAGADFVKVGIG 314 (502)
T ss_pred HHHHHhCCCeEeecCcccccHHHHHHHHHHHHhCCC-C--ceEEe--cc--ccCHHHHHHHHHcCCCEEEECCC
Confidence 999999999999974322 4567777776652 1 22222 21 234 45699999998876444
No 428
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=84.58 E-value=56 Score=34.27 Aligned_cols=154 Identities=16% Similarity=0.056 Sum_probs=90.7
Q ss_pred HHHHHHHHhCC--CceEecccCChHHHHHHHHhCCcEEEec-c--HHHHhhhccCCCCCCCCHHHHHHHHHHHH---hhc
Q 012478 78 AKSLRQILELP--GVHQGPACFDALSAKLVEKSGFSFCFTS-G--FSISAARLALPDTGFISYGEMVDQGQLIT---QAV 149 (462)
Q Consensus 78 a~~LR~ll~~~--~~iv~p~ayDalSArl~e~aGfdaI~vS-G--~avSas~lG~PD~g~vsl~Eml~~~~~I~---ra~ 149 (462)
.+.++.+.+.. ..+.+.+-...-..+.+.++|++.+.+. + -...-..++ .+.+|.++.+.... +..
T Consensus 51 ~e~i~~i~~~~~~~~v~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~------~~~~~~~~~~~~~i~~ak~~ 124 (363)
T TIGR02090 51 FEAIKKISQEGLNAEICSLARALKKDIDKAIDCGVDSIHTFIATSPIHLKYKLK------KSRDEVLEKAVEAVEYAKEH 124 (363)
T ss_pred HHHHHHHHhcCCCcEEEEEcccCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhC------CCHHHHHHHHHHHHHHHHHc
Confidence 33455554432 2333333333444566677899987775 2 111111223 46666666554433 344
Q ss_pred CCcEEEeCCCCC-CCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEE
Q 012478 150 SIPVIGDGDNGY-GNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIV 228 (462)
Q Consensus 150 ~iPVIaD~DtGy-G~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIi 228 (462)
+..|.+.+++.+ -++..+.+.++.+.++|+..|.|-|.. |. ..++++.+.|+.+++.. +..+=+-
T Consensus 125 G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~DT~-----G~------~~P~~v~~li~~l~~~~---~~~l~~H 190 (363)
T TIGR02090 125 GLIVEFSAEDATRTDIDFLIKVFKRAEEAGADRINIADTV-----GV------LTPQKMEELIKKLKENV---KLPISVH 190 (363)
T ss_pred CCEEEEEEeecCCCCHHHHHHHHHHHHhCCCCEEEEeCCC-----Cc------cCHHHHHHHHHHHhccc---CceEEEE
Confidence 677888876654 367889999999999999999999985 32 33456666666665432 1122222
Q ss_pred EecchhhcccHHHHHHHHHHhHhcCCcEE
Q 012478 229 ARTDSRQALSLEESLRRSRAFADAGADVL 257 (462)
Q Consensus 229 ARTDA~~~~gldeAI~RakAy~eAGAD~I 257 (462)
...| +.-|+.-+.+..++||+.|
T Consensus 191 ~Hnd------~GlA~AN~laA~~aGa~~v 213 (363)
T TIGR02090 191 CHND------FGLATANSIAGVKAGAEQV 213 (363)
T ss_pred ecCC------CChHHHHHHHHHHCCCCEE
Confidence 3322 2345667778888999875
No 429
>TIGR03586 PseI pseudaminic acid synthase.
Probab=84.57 E-value=36 Score=35.60 Aligned_cols=124 Identities=18% Similarity=0.170 Sum_probs=75.4
Q ss_pred eeeeeccchhhhhhcccCC------CCceeeccccc-CCCccccccCchHHHHHHHHhCCCceEecccCChHHHHHHHHh
Q 012478 36 TISFNKTNTNTLLLNTATN------PGTINRTRVYR-KNSTGVEACLSPAKSLRQILELPGVHQGPACFDALSAKLVEKS 108 (462)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~------Pr~~~~~R~y~-rgs~~~~~a~~~a~~LR~ll~~~~~iv~p~ayDalSArl~e~a 108 (462)
++-||.-..+.+....... ..|++.. .|. --.+..+ ...-+.|.+.-++-+..++-++||.-++.++++.
T Consensus 33 avKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~el~--~e~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~ 109 (327)
T TIGR03586 33 AIKLQTYTPDTITLDSDRPEFIIKGGLWDGRT-LYDLYQEAHTP--WEWHKELFERAKELGLTIFSSPFDETAVDFLESL 109 (327)
T ss_pred EEEeeeccHHHhhccccccccccccCCcCCcc-HHHHHHHhhCC--HHHHHHHHHHHHHhCCcEEEccCCHHHHHHHHHc
Confidence 5667776677766555433 2454311 110 0001111 1222344454666778899999999999999999
Q ss_pred CCcEEEeccHHHHh-------hhccCC---CCCCCCHHHHHHHHHHHHhhcC-CcEEEeCCCCCC
Q 012478 109 GFSFCFTSGFSISA-------ARLALP---DTGFISYGEMVDQGQLITQAVS-IPVIGDGDNGYG 162 (462)
Q Consensus 109 GfdaI~vSG~avSa-------s~lG~P---D~g~vsl~Eml~~~~~I~ra~~-iPVIaD~DtGyG 162 (462)
|.+++-++|.-+.+ +..|.| .+|.-+++|+...++.|.+.-+ --++.-+-.+|-
T Consensus 110 ~v~~~KI~S~~~~n~~LL~~va~~gkPvilstG~~t~~Ei~~Av~~i~~~g~~~i~LlhC~s~YP 174 (327)
T TIGR03586 110 DVPAYKIASFEITDLPLIRYVAKTGKPIIMSTGIATLEEIQEAVEACREAGCKDLVLLKCTSSYP 174 (327)
T ss_pred CCCEEEECCccccCHHHHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHCCCCcEEEEecCCCCC
Confidence 99999999844322 134766 4577899999999888865322 123334445553
No 430
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=84.52 E-value=27 Score=31.04 Aligned_cols=127 Identities=17% Similarity=0.138 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHH-
Q 012478 165 MNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESL- 243 (462)
Q Consensus 165 ~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI- 243 (462)
....+.++.+.+.|+..|+++.... +..+...... +.++.+... .+..+++...+... .+.+
T Consensus 12 ~~~~~~~~~~~~~G~~~v~~~~~~~-----~~~~~~~~~~----~~~~~~~~~---~~~~~~~~~~~~~~-----~~~~~ 74 (200)
T cd04722 12 GDPVELAKAAAEAGADAIIVGTRSS-----DPEEAETDDK----EVLKEVAAE---TDLPLGVQLAINDA-----AAAVD 74 (200)
T ss_pred HHHHHHHHHHHcCCCCEEEEeeEEE-----CcccCCCccc----cHHHHHHhh---cCCcEEEEEccCCc-----hhhhh
Confidence 3556677888889999999987541 1111111110 112222221 12344554433221 1112
Q ss_pred HHHHHhHhcCCcEEEecCCC------CHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcCCCEEeccch
Q 012478 244 RRSRAFADAGADVLFIDALA------SKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLS 312 (462)
Q Consensus 244 ~RakAy~eAGAD~Ifie~~~------s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~ 312 (462)
..++.+.++|+|.|.++.-. ..+.++++.+.++..|..+-+... . ......+.++|+..+.+.+.
T Consensus 75 ~~a~~~~~~g~d~v~l~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~---~-~~~~~~~~~~g~d~i~~~~~ 145 (200)
T cd04722 75 IAAAAARAAGADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVKLSPT---G-ELAAAAAEEAGVDEVGLGNG 145 (200)
T ss_pred HHHHHHHHcCCCEEEEeccCCcHHHHHHHHHHHHHHhcCCceEEEEECCC---C-ccchhhHHHcCCCEEEEcCC
Confidence 12678889999999998754 344566666665444544333211 1 11222278899998877543
No 431
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=84.44 E-value=22 Score=37.18 Aligned_cols=46 Identities=26% Similarity=0.307 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhHhcCCcEEEe-cCCCCHHHHHHHHHhCCCCceeeeee
Q 012478 239 LEESLRRSRAFADAGADVLFI-DALASKEEMKAFCEISPLVPKMANML 285 (462)
Q Consensus 239 ldeAI~RakAy~eAGAD~Ifi-e~~~s~eei~~i~~~v~~vP~~~N~l 285 (462)
-+||++.+..=.+-|||+|+| ++++-.+.++++.+.++ +|+.+=.+
T Consensus 232 ~~EAlrE~~lD~~EGAD~lMVKPal~YLDIi~~vk~~~~-lP~~AYqV 278 (330)
T COG0113 232 RREALREIELDIEEGADILMVKPALPYLDIIRRVKEEFN-LPVAAYQV 278 (330)
T ss_pred HHHHHHHHHhhHhcCCcEEEEcCCchHHHHHHHHHHhcC-CCeEEEec
Confidence 689999999999999999999 78888999999999887 67654333
No 432
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=84.33 E-value=34 Score=36.66 Aligned_cols=119 Identities=13% Similarity=0.210 Sum_probs=76.3
Q ss_pred HHHHHhhcCCcEEEeCCCC-CC-CHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHH-H
Q 012478 142 GQLITQAVSIPVIGDGDNG-YG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDA-R 218 (462)
Q Consensus 142 ~~~I~ra~~iPVIaD~DtG-yG-~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~A-r 218 (462)
+|++....+-||+.=+--- -| ++.+..+.+..+...|++=|| .|.. +..++..|.+|-+..+..+++. .
T Consensus 115 ~R~~lgv~~RPL~~tiiKP~~Glsp~~~a~~~y~~~~GGvD~IK-DDE~-------l~~q~~~p~~eRv~a~~~a~~~a~ 186 (391)
T cd08209 115 IRQRLGVHDRPLLMSIFKGVLGLDLDDLAEQLREQALGGVDLIK-DDEI-------LFDNPLAPALERIRACRPVLQEVY 186 (391)
T ss_pred HHHHhCCCCCceEEeeeccccCCCHHHHHHHHHHHHhCCCCccc-cccc-------CCCCCCCCHHHHHHHHHHHHHHHH
Confidence 5667777789999876554 35 578888999999999998765 2332 2334556666544444444333 3
Q ss_pred HhhCCCeEEEEe-cchhhcccHHHHHHHHHHhHhcCCcEEEecCCCC-HHHHHHHHH
Q 012478 219 KESGSDIVIVAR-TDSRQALSLEESLRRSRAFADAGADVLFIDALAS-KEEMKAFCE 273 (462)
Q Consensus 219 ~~~g~d~vIiAR-TDA~~~~gldeAI~RakAy~eAGAD~Ifie~~~s-~eei~~i~~ 273 (462)
++.|...+-... |+ +.+|.++|++...++|++++++.-... ..-++.+.+
T Consensus 187 ~eTG~~~~ya~NiT~-----~~~em~~ra~~~~~~G~~~~mv~~~~~G~~~l~~l~~ 238 (391)
T cd08209 187 EQTGRRTLYAVNLTG-----PVFTLKEKARRLVEAGANALLFNVFAYGLDVLEALAS 238 (391)
T ss_pred HhhCCcceEEEEcCC-----CHHHHHHHHHHHHHhCCCEEEEeccccchHHHHHHHh
Confidence 334432221111 22 358999999999999999999875433 345666666
No 433
>cd08213 RuBisCO_large_III Ribulose bisphosphate carboxylase large chain, Form III. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form III is only found in archaea and forms large subunit oligomers (dimers or decamers) that do not include small subunits.
Probab=84.27 E-value=37 Score=36.72 Aligned_cols=119 Identities=18% Similarity=0.198 Sum_probs=75.7
Q ss_pred HHHHHHhhcCCcEEEeCCCC-CC-CHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHH-H
Q 012478 141 QGQLITQAVSIPVIGDGDNG-YG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVD-A 217 (462)
Q Consensus 141 ~~~~I~ra~~iPVIaD~DtG-yG-~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~-A 217 (462)
-+|++....+-||+.-+--- -| ++.+..+.+.++...|++=|| .|.. ...++..|.++-+..+..+++ +
T Consensus 121 G~R~~lgv~~RPL~gtiiKP~~Glsp~~~a~~~y~~~~GGvD~iK-DDE~-------l~~q~~~p~~~Rv~~~~~a~~~a 192 (412)
T cd08213 121 GVREILGIKDRPLLGTVPKPKVGLSPEEHAEVAYEALVGGVDLVK-DDEN-------LTSQPFNRFEERAKESLKARDKA 192 (412)
T ss_pred hHHHHhCCCCCCeEEeecCcccCCCHHHHHHHHHHHHhcCCcccc-cCcc-------CCCCCCCCHHHHHHHHHHHHHHH
Confidence 35666677789999887665 35 578889999999999998775 2332 233455566554444433332 2
Q ss_pred HHhhCCC--eEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEecCCCC-HHHHHHHHH
Q 012478 218 RKESGSD--IVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALAS-KEEMKAFCE 273 (462)
Q Consensus 218 r~~~g~d--~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~~~s-~eei~~i~~ 273 (462)
.++.|.. +.+|. | .+.+|.++|++...++|++++++..... ..-++.+.+
T Consensus 193 ~~eTG~~~~y~~Ni-T-----~~~~em~~ra~~a~e~G~~~~mv~~~~~G~~~l~~l~~ 245 (412)
T cd08213 193 EAETGERKAYLANI-T-----APVREMERRAELVADLGGKYVMIDVVVAGWSALQYLRD 245 (412)
T ss_pred HHhhCCcceEEEEe-c-----CCHHHHHHHHHHHHHhCCCeEEeeccccChHHHHHHHH
Confidence 3333422 33332 2 1368999999999999999999875542 234455544
No 434
>PLN02321 2-isopropylmalate synthase
Probab=84.13 E-value=16 Score=41.40 Aligned_cols=274 Identities=19% Similarity=0.144 Sum_probs=137.1
Q ss_pred HHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhc--CC------cEEEeCCCCCC--CHHHHHHH
Q 012478 101 SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV--SI------PVIGDGDNGYG--NAMNVKRT 170 (462)
Q Consensus 101 SArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~--~i------PVIaD~DtGyG--~~~nv~rt 170 (462)
-|+.+.++||+.|=++...++ |+ .++. ++.|.+.. .+ |+| .+++ +...+.++
T Consensus 113 Ia~~L~~lGVd~IEvGfP~~S------p~----D~e~----vr~i~~~~~~~v~~~~~v~~i----~a~~ra~~~dId~A 174 (632)
T PLN02321 113 IARQLAKLGVDIIEAGFPIAS------PD----DLEA----VKTIAKEVGNEVDEDGYVPVI----CGLSRCNKKDIDAA 174 (632)
T ss_pred HHHHHHHcCCCEEEEeCcCCC------cc----HHHH----HHHHHHhcccCCCccccceee----eeehhccHHhHHHH
Confidence 466788899999987643321 11 2222 44454432 12 322 2344 33455555
Q ss_pred HHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhH
Q 012478 171 VKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFA 250 (462)
Q Consensus 171 Vk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~ 250 (462)
.+.+..++...||+--.+++- |...+--.+.+|.++++..+++..++.|.+.+...=-|+. ..+.+.+++-++++.
T Consensus 175 ~~al~~a~~~~I~i~~stSd~---h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~EDa~-rtd~d~l~~~~~~a~ 250 (632)
T PLN02321 175 WEAVKHAKRPRIHTFIATSEI---HMEHKLRKTPDEVVEIARDMVKYARSLGCEDVEFSPEDAG-RSDPEFLYRILGEVI 250 (632)
T ss_pred HHHhcCCCCCEEEEEEcCCHH---HHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEEecccCC-CCCHHHHHHHHHHHH
Confidence 544333444568886555432 3322223468999999999988887765432333222322 235788888999999
Q ss_pred hcCCcEEEec---CCCCHHHHHHHHHh----CCCCc-eeeeeeecCCCCCCCC---HHHHHhcCCCEEeccchHH--HHH
Q 012478 251 DAGADVLFID---ALASKEEMKAFCEI----SPLVP-KMANMLEGGGKTPILN---PLELEELGFKLVAYPLSLI--GVS 317 (462)
Q Consensus 251 eAGAD~Ifie---~~~s~eei~~i~~~----v~~vP-~~~N~l~~~g~tP~ls---~~eL~~lGv~~V~yp~~ll--~aa 317 (462)
++|||.|.+. +...++++.++.+. ++..+ ..+-+ .... ...+. .-.--+.|+++|-.....+ ++.
T Consensus 251 ~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~v-H~HN-D~GlAvANslaAv~AGA~~Vd~TinGlGERaG 328 (632)
T PLN02321 251 KAGATTLNIPDTVGYTLPSEFGQLIADIKANTPGIENVIIST-HCQN-DLGLSTANTLAGAHAGARQVEVTINGIGERAG 328 (632)
T ss_pred HcCCCEEEecccccCCCHHHHHHHHHHHHHhcCCCCCceEEE-EeCC-CCCHHHHHHHHHHHhCCCEEEEeccccccccc
Confidence 9999999885 34566666666544 44322 22221 1111 11121 1223466777765544433 344
Q ss_pred HHHHHHHHHHHHc-CCCC--CCCCCCCHHHHHHhcCcccHHHHHHhhcccccccccccccCCCCCCCCCCcchhhhhcCC
Q 012478 318 VRAMQDALTAIKG-GRIP--SPGSMPSFQEIKETLGFNTYYEEEKRYATSMRRLSSENVTSNSYDTQPMAQDDTARRGQS 394 (462)
Q Consensus 318 ~~Am~~~l~~l~~-g~~~--~~~~~~s~~e~~~lvg~~~~~~~e~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (462)
..++++.+-.|+. +... .....+.++++.++ .++.+........++. .-.|.|.|+-+.---.|.-.+..
T Consensus 329 Na~LEevv~~L~~~~~~~~~g~~tgidl~~L~~~---s~~V~~~~g~~v~~~k---PiVG~naFaheSGIH~dgvlk~~- 401 (632)
T PLN02321 329 NASLEEVVMAIKCRGDEQLGGLYTGINPVHITPT---SKMVSEYTGMQVQPHK---AIVGANAFAHESGIHQDGMLKHK- 401 (632)
T ss_pred CccHHHHHHHHHhccCccccCcccccCHHHHHHH---HHHHHHHhCcCCCCCc---ccccccceehhcCccHHHHccCc-
Confidence 4555555555542 2100 01112334444322 2222222222223332 34566666655544444333322
Q ss_pred CCCCeeEeeCcccc
Q 012478 395 SQDPIVEVITPEVY 408 (462)
Q Consensus 395 ~~~~~~~~~~~~~~ 408 (462)
-..|.|.|+..
T Consensus 402 ---~tYe~i~Pe~V 412 (632)
T PLN02321 402 ---GTYEIISPEDI 412 (632)
T ss_pred ---ccccccCHHHh
Confidence 24666777665
No 435
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=84.11 E-value=2.1 Score=45.83 Aligned_cols=66 Identities=24% Similarity=0.315 Sum_probs=45.1
Q ss_pred HHHHHHHHHhHhcCCcEEEecCCC--C---HHHHHHHHHhCCCCceee-eeeecCCCCCCCCHHHHHhcCCCEEeccc
Q 012478 240 EESLRRSRAFADAGADVLFIDALA--S---KEEMKAFCEISPLVPKMA-NMLEGGGKTPILNPLELEELGFKLVAYPL 311 (462)
Q Consensus 240 deAI~RakAy~eAGAD~Ifie~~~--s---~eei~~i~~~v~~vP~~~-N~l~~~g~tP~ls~~eL~~lGv~~V~yp~ 311 (462)
++.++|+.+..+||||+|++++-. + .+.++++.+.+|.+++++ |+. |+ -....|.++|+..|.++.
T Consensus 152 ~~~~~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~-----T~-e~a~~l~~aGaD~I~vG~ 223 (404)
T PRK06843 152 IDTIERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIV-----TK-EAALDLISVGADCLKVGI 223 (404)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecC-----CH-HHHHHHHHcCCCEEEECC
Confidence 467899999999999999987642 2 234556666666555433 332 11 245778999999987764
No 436
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=84.11 E-value=14 Score=36.67 Aligned_cols=200 Identities=20% Similarity=0.195 Sum_probs=105.3
Q ss_pred HHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhc-CCcEEEeCCCCCCCHHHHHHHHHHHHHhC--
Q 012478 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV-SIPVIGDGDNGYGNAMNVKRTVKGYIKAG-- 178 (462)
Q Consensus 102 Arl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~-~iPVIaD~DtGyG~~~nv~rtVk~l~~AG-- 178 (462)
++.+.++||+.|=+++... -|+ .+ +.++.+.+.. +..+.+=.+. + .+.++...++|
T Consensus 26 ~~~L~~~Gv~~iEvg~~~~------~~~----~~----~~~~~l~~~~~~~~~~~l~r~---~----~~~v~~a~~~~~~ 84 (268)
T cd07940 26 ARQLDELGVDVIEAGFPAA------SPG----DF----EAVKRIAREVLNAEICGLARA---V----KKDIDAAAEALKP 84 (268)
T ss_pred HHHHHHcCCCEEEEeCCCC------CHH----HH----HHHHHHHHhCCCCEEEEEccC---C----HhhHHHHHHhCCC
Confidence 3456788999998874331 111 11 3344444422 3444433321 2 23345555666
Q ss_pred --ccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcE
Q 012478 179 --FAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADV 256 (462)
Q Consensus 179 --aaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~ 256 (462)
+..|+|-+...+. |...+-=.+.++.++++..+++..++.|..+.+ .=.|+. ....+...+.++.+.++|+|.
T Consensus 85 ~~~~~i~i~~~~s~~---~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~-~~~~~~-~~~~~~~~~~~~~~~~~G~~~ 159 (268)
T cd07940 85 AKVDRIHTFIATSDI---HLKYKLKKTREEVLERAVEAVEYAKSHGLDVEF-SAEDAT-RTDLDFLIEVVEAAIEAGATT 159 (268)
T ss_pred CCCCEEEEEecCCHH---HHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEE-eeecCC-CCCHHHHHHHHHHHHHcCCCE
Confidence 9999997765432 110000124567777777777666665543332 222322 245778888999999999999
Q ss_pred EEec---CCCCHHHHHHHHHhCCC-Cc---eeeeeeecCCCCCCCC---HHHHHhcCCCEEeccchHH--HHHHHHHHHH
Q 012478 257 LFID---ALASKEEMKAFCEISPL-VP---KMANMLEGGGKTPILN---PLELEELGFKLVAYPLSLI--GVSVRAMQDA 324 (462)
Q Consensus 257 Ifie---~~~s~eei~~i~~~v~~-vP---~~~N~l~~~g~tP~ls---~~eL~~lGv~~V~yp~~ll--~aa~~Am~~~ 324 (462)
|.+. |.-+++++..+.+.+.. +| .++.+ ... .+..+. .-+--+.|+++|--....+ ++..-++++.
T Consensus 160 i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~l~~-H~H-n~~GlA~An~laAi~aG~~~iD~s~~GlG~~aGN~~tE~l 237 (268)
T cd07940 160 INIPDTVGYLTPEEFGELIKKLKENVPNIKVPISV-HCH-NDLGLAVANSLAAVEAGARQVECTINGIGERAGNAALEEV 237 (268)
T ss_pred EEECCCCCCCCHHHHHHHHHHHHHhCCCCceeEEE-Eec-CCcchHHHHHHHHHHhCCCEEEEEeeccccccccccHHHH
Confidence 9884 34566777766654321 12 33322 111 122232 2233356777765544443 2333445555
Q ss_pred HHHHH
Q 012478 325 LTAIK 329 (462)
Q Consensus 325 l~~l~ 329 (462)
+..|.
T Consensus 238 v~~L~ 242 (268)
T cd07940 238 VMALK 242 (268)
T ss_pred HHHHH
Confidence 55453
No 437
>TIGR01927 menC_gamma/gm+ o-succinylbenzoic acid (OSB) synthetase. This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are gamma proteobacteria and archaea. Many of the com-names of the proteins identified by the model are identified as O-succinylbenzoyl-CoA synthase in error.
Probab=84.02 E-value=13 Score=37.81 Aligned_cols=101 Identities=18% Similarity=0.217 Sum_probs=68.7
Q ss_pred CCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHH
Q 012478 162 GNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEE 241 (462)
Q Consensus 162 G~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~glde 241 (462)
|++..+.+-+++ +.|...+||-- |. -+.++-+++|++++++. |+++.| |.|+-.....++
T Consensus 110 ~~~~~~~~~~~~--~~Gf~~~KiKv-------G~------~~~~~d~~~v~~vr~~~---g~~~~l--~vDaN~~w~~~~ 169 (307)
T TIGR01927 110 GDPALLLLRSAK--AEGFRTFKWKV-------GV------GELAREGMLVNLLLEAL---PDKAEL--RLDANGGLSPDE 169 (307)
T ss_pred CCHHHHHHHHHH--hCCCCEEEEEe-------CC------CChHHHHHHHHHHHHHc---CCCCeE--EEeCCCCCCHHH
Confidence 555544444433 67999999832 11 12345577888887653 445554 778877788999
Q ss_pred HHHHHHHhHh-cCCcEEEecCC-CCHHHHHHHHHhCCCCceeee
Q 012478 242 SLRRSRAFAD-AGADVLFIDAL-ASKEEMKAFCEISPLVPKMAN 283 (462)
Q Consensus 242 AI~RakAy~e-AGAD~Ifie~~-~s~eei~~i~~~v~~vP~~~N 283 (462)
|++-++++.+ .|-+.-|+|-+ +..+.++++.+..+ +|+.++
T Consensus 170 A~~~~~~l~~~~~~~i~~iEqP~~~~~~~~~l~~~~~-~Pia~d 212 (307)
T TIGR01927 170 AQQFLKALDPNLRGRIAFLEEPLPDADEMSAFSEATG-TAIALD 212 (307)
T ss_pred HHHHHHhcccccCCCceEEeCCCCCHHHHHHHHHhCC-CCEEeC
Confidence 9999999985 66778889865 34478888888765 676543
No 438
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=83.99 E-value=42 Score=36.53 Aligned_cols=142 Identities=20% Similarity=0.257 Sum_probs=80.8
Q ss_pred cEEEeCCC--CCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEE
Q 012478 152 PVIGDGDN--GYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVA 229 (462)
Q Consensus 152 PVIaD~Dt--GyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiA 229 (462)
.+|.|-+. +++.. ..+.++++.++|+..|+|-+.. .+.+++.+.++.+++..++.+..++|+.
T Consensus 294 y~it~~~~~~~~~~~--~~~~l~~~l~~Gv~~vqlR~k~-------------~~~~~~~~~a~~l~~~~~~~~~~liind 358 (502)
T PLN02898 294 YAVTDSGMNKKWGRS--TVDAVRAAIEGGATIVQLREKE-------------AETREFIEEAKACLAICRSYGVPLLIND 358 (502)
T ss_pred EEEECccccccccch--HHHHHHHHHHcCCCEEEEccCC-------------CCHHHHHHHHHHHHHHHHHhCCEEEEcC
Confidence 36666544 23332 4456888899999999998763 1334555555555544444455677776
Q ss_pred ecchhh------cc----c--HHH----------------HHHHHHHhHhcCCcEEEecCC-----------CCHHHHHH
Q 012478 230 RTDSRQ------AL----S--LEE----------------SLRRSRAFADAGADVLFIDAL-----------ASKEEMKA 270 (462)
Q Consensus 230 RTDA~~------~~----g--lde----------------AI~RakAy~eAGAD~Ifie~~-----------~s~eei~~ 270 (462)
|.|-.. .+ + ..+ .++.+....+.|||.|++-.+ ...+.+++
T Consensus 359 ~~~lA~~~~adGvHl~~~d~~~~~~r~~~~~~~~iG~S~h~~~e~~~a~~~gadyi~~gpif~t~tk~~~~~~g~~~~~~ 438 (502)
T PLN02898 359 RVDVALACDADGVHLGQSDMPVRLARSLLGPGKIIGVSCKTPEQAEQAWKDGADYIGCGGVFPTNTKANNKTIGLDGLRE 438 (502)
T ss_pred hHHHHHhcCCCEEEeChHhcCHHHHHHhcCCCCEEEEeCCCHHHHHHHhhcCCCEEEECCeecCCCCCCCCCCCHHHHHH
Confidence 655421 00 0 011 122345556789999874211 13567787
Q ss_pred HHHhCCCCceeeeeeecCCCCCCCCHHHHHhcCCC---EEeccchHH
Q 012478 271 FCEISPLVPKMANMLEGGGKTPILNPLELEELGFK---LVAYPLSLI 314 (462)
Q Consensus 271 i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~---~V~yp~~ll 314 (462)
+++... +|++ .-||-++ -+..++.+.|+. .|.....++
T Consensus 439 ~~~~~~-~Pv~----aiGGI~~-~~~~~~~~~G~~~~~gvav~~~i~ 479 (502)
T PLN02898 439 VCEASK-LPVV----AIGGISA-SNAASVMESGAPNLKGVAVVSALF 479 (502)
T ss_pred HHHcCC-CCEE----EECCCCH-HHHHHHHHcCCCcCceEEEEeHHh
Confidence 776543 5643 2234332 245778888887 776666554
No 439
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=83.88 E-value=16 Score=37.92 Aligned_cols=162 Identities=20% Similarity=0.167 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhC-----CCeEEEEecchhh--
Q 012478 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESG-----SDIVIVARTDSRQ-- 235 (462)
Q Consensus 163 ~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g-----~d~vIiARTDA~~-- 235 (462)
.|..+.+.=+.|++|||+-| |-.+|.-.-=-+....+-+.-.-+.+ +|++-||+..+ .+-+|.+----..
T Consensus 51 ~Pd~I~~IH~aY~eAGADiI--eTNTFgat~i~lady~led~v~~in~-~aa~iAR~aA~~~~~~k~rfVaGsiGPt~k~ 127 (311)
T COG0646 51 KPDVIEAIHRAYIEAGADII--ETNTFGATTIKLADYGLEDKVYEINQ-KAARIARRAADEAGDPKPRFVAGSIGPTNKT 127 (311)
T ss_pred CcHHHHHHHHHHHhccCcEE--EecCCCcchhhHhhhChHHHHHHHHH-HHHHHHHHHHhhcCCCCceEEEEeccCcCCc
Q ss_pred -------cccHHHHHHH----HHHhHhcCCcEEEecCCCCHHHHHHHH---HhCCC-----CceeeeeeecC------CC
Q 012478 236 -------ALSLEESLRR----SRAFADAGADVLFIDALASKEEMKAFC---EISPL-----VPKMANMLEGG------GK 290 (462)
Q Consensus 236 -------~~gldeAI~R----akAy~eAGAD~Ifie~~~s~eei~~i~---~~v~~-----vP~~~N~l~~~------g~ 290 (462)
+..+|+.++- ...+.+-|||++++|-+.+..+++... +.+-. +|+++++.... |.
T Consensus 128 ~~~~~~~~v~fd~l~~ay~eq~~~Li~gG~D~iLiET~~D~l~~KaA~~a~~~~~~~~~~~LPv~~s~Ti~~sG~tl~Gq 207 (311)
T COG0646 128 LSISPDFAVTFDELVEAYREQVEGLIDGGADLILIETIFDTLNAKAAVFAAREVFEELGVRLPVMISGTITDSGRTLSGQ 207 (311)
T ss_pred CCcCCcccccHHHHHHHHHHHHHHHHhCCCcEEEEehhccHHHHHHHHHHHHHHHHhcCCcccEEEEEEEecCceecCCC
Q ss_pred CCCCCHHHHHhcCCCEEeccchHHHHHHHHHHHHHHHHHc
Q 012478 291 TPILNPLELEELGFKLVAYPLSLIGVSVRAMQDALTAIKG 330 (462)
Q Consensus 291 tP~ls~~eL~~lGv~~V~yp~~ll~aa~~Am~~~l~~l~~ 330 (462)
+|.--...|+.+| ..++|.-+-.-+ ..|+..++.+..
T Consensus 208 ~~~a~~~~l~~~~--~~~vGlNCa~Gp-~~m~~~l~~ls~ 244 (311)
T COG0646 208 TIEAFLNSLEHLG--PDAVGLNCALGP-DEMRPHLRELSR 244 (311)
T ss_pred cHHHHHHHhhccC--CcEEeeccccCH-HHHHHHHHHHHh
No 440
>PLN02321 2-isopropylmalate synthase
Probab=83.79 E-value=16 Score=41.49 Aligned_cols=108 Identities=20% Similarity=0.107 Sum_probs=72.0
Q ss_pred CCHHHHHHHHHHHHhh---cCC-cEEEeCCCCCC-CHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHH
Q 012478 133 ISYGEMVDQGQLITQA---VSI-PVIGDGDNGYG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEA 207 (462)
Q Consensus 133 vsl~Eml~~~~~I~ra---~~i-PVIaD~DtGyG-~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~ 207 (462)
.+.+|.++.+..+.+. .+. -+..++++++- ++..+.+.++.++++||.-|+|-|.+ | ...++++
T Consensus 203 ~t~ee~l~~~~~~V~~Ak~~G~~~v~fs~EDa~rtd~d~l~~~~~~a~~aGa~~I~L~DTv-----G------~~~P~~v 271 (632)
T PLN02321 203 KTPDEVVEIARDMVKYARSLGCEDVEFSPEDAGRSDPEFLYRILGEVIKAGATTLNIPDTV-----G------YTLPSEF 271 (632)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCceEEEecccCCCCCHHHHHHHHHHHHHcCCCEEEecccc-----c------CCCHHHH
Confidence 5788888877766543 334 48899988764 67889999999999999999999986 3 3345677
Q ss_pred HHHHHHHHHHHHhh-CCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEE
Q 012478 208 VMRIKAAVDARKES-GSDIVIVARTDSRQALSLEESLRRSRAFADAGADVL 257 (462)
Q Consensus 208 ~~kI~AA~~Ar~~~-g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~I 257 (462)
.+.|+.+++.-... +..+-+-...| +.-|+.-+.+..+|||+.|
T Consensus 272 ~~li~~l~~~~~~~~~v~i~vH~HND------~GlAvANslaAv~AGA~~V 316 (632)
T PLN02321 272 GQLIADIKANTPGIENVIISTHCQND------LGLSTANTLAGAHAGARQV 316 (632)
T ss_pred HHHHHHHHHhcCCCCCceEEEEeCCC------CCHHHHHHHHHHHhCCCEE
Confidence 77777776543210 01122223323 2345666667778888864
No 441
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=83.79 E-value=12 Score=39.11 Aligned_cols=168 Identities=23% Similarity=0.288 Sum_probs=103.4
Q ss_pred EecccCChHHHHHHH------HhCCcEEEeccHHHHhhhccCCCC-CCCCHHH---HHHHHHHHHhhc-CCcEEEeC---
Q 012478 92 QGPACFDALSAKLVE------KSGFSFCFTSGFSISAARLALPDT-GFISYGE---MVDQGQLITQAV-SIPVIGDG--- 157 (462)
Q Consensus 92 v~p~ayDalSArl~e------~aGfdaI~vSG~avSas~lG~PD~-g~vsl~E---ml~~~~~I~ra~-~iPVIaD~--- 157 (462)
.|||.|=..--.+++ +.|.+++.+=|.. . ..|. +.-.+++ +...++.|.+.. ++-||+|.
T Consensus 49 smPg~~r~s~d~l~~~v~~~~~~Gi~av~LFgv~----~--~Kd~~gs~A~~~~g~v~rair~iK~~~p~l~vi~DVcLc 122 (323)
T PRK09283 49 SMPGVYRLSIDLLVKEAEEAVELGIPAVALFGVP----E--LKDEDGSEAYNPDGLVQRAIRAIKKAFPELGVITDVCLD 122 (323)
T ss_pred CCCCceeeCHHHHHHHHHHHHHCCCCEEEEeCcC----C--CCCcccccccCCCCHHHHHHHHHHHhCCCcEEEEeeecc
Confidence 577776544333333 4699988876641 1 1221 2222222 455667777665 47788885
Q ss_pred ---CCCC------C---CHHH---HHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhC
Q 012478 158 ---DNGY------G---NAMN---VKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESG 222 (462)
Q Consensus 158 ---DtGy------G---~~~n---v~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g 222 (462)
++|+ | |... ..+..-.+.+|||+-|-=-|- |+| ||.|++++.++.|
T Consensus 123 ~YT~hGHcGil~~g~idND~Tl~~L~~~Al~~A~AGaDiVAPSdM--------MDG-----------rV~aIR~aLd~~g 183 (323)
T PRK09283 123 EYTSHGHCGILEDGYVDNDETLELLAKQALSQAEAGADIVAPSDM--------MDG-----------RVGAIREALDEAG 183 (323)
T ss_pred CCCCCCceecccCCcCcCHHHHHHHHHHHHHHHHhCCCEEEcccc--------ccc-----------HHHHHHHHHHHCC
Confidence 3343 2 3333 334444566899988765553 332 5566666655433
Q ss_pred -CCeEEEEecchhh--------------------------cccHHHHHHHHHHhHhcCCcEEEe-cCCCCHHHHHHHHHh
Q 012478 223 -SDIVIVARTDSRQ--------------------------ALSLEESLRRSRAFADAGADVLFI-DALASKEEMKAFCEI 274 (462)
Q Consensus 223 -~d~vIiARTDA~~--------------------------~~gldeAI~RakAy~eAGAD~Ifi-e~~~s~eei~~i~~~ 274 (462)
.+.-|.+-+--++ ...-.|||+.+..=.+-|||+|+| |+++..+.++++.+.
T Consensus 184 ~~~v~ImSYsaKyaS~fYGPFRdA~~Sap~~gDrktYQmdp~n~~eAlre~~~D~~EGAD~lMVKPal~YLDIi~~~k~~ 263 (323)
T PRK09283 184 FTDVPIMSYSAKYASAFYGPFRDAAGSAPQFGDRKTYQMDPANRREALREVALDIEEGADMVMVKPALPYLDIIRRVKDE 263 (323)
T ss_pred CCCCceeecHHHHHHhhhHHHHHHHhcCCCCCCccccCCCCCCHHHHHHHHHhhHHhCCCEEEEcCCchHHHHHHHHHhc
Confidence 2556666543321 012579999999999999999999 788999999999998
Q ss_pred CCCCceeeeee
Q 012478 275 SPLVPKMANML 285 (462)
Q Consensus 275 v~~vP~~~N~l 285 (462)
++ +|+.+=.+
T Consensus 264 ~~-~PvaaYqV 273 (323)
T PRK09283 264 FN-LPVAAYQV 273 (323)
T ss_pred CC-CCEEEEEc
Confidence 86 67654444
No 442
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=83.78 E-value=4.9 Score=39.78 Aligned_cols=92 Identities=21% Similarity=0.165 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEecCCCCHHHHHHHH---HhCCCCceeeeee
Q 012478 209 MRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFC---EISPLVPKMANML 285 (462)
Q Consensus 209 ~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~---~~v~~vP~~~N~l 285 (462)
+-|++.++.. ||-+|+|=+...-+.. + .++...+||||.+-+-|..+.+-++... ++.. .-.++.|+
T Consensus 45 ~aV~~lr~~~----pd~~IvAD~Kt~D~G~----~-e~~ma~~aGAd~~tV~g~A~~~TI~~~i~~A~~~~-~~v~iDl~ 114 (217)
T COG0269 45 RAVRALRELF----PDKIIVADLKTADAGA----I-EARMAFEAGADWVTVLGAADDATIKKAIKVAKEYG-KEVQIDLI 114 (217)
T ss_pred HHHHHHHHHC----CCCeEEeeeeecchhH----H-HHHHHHHcCCCEEEEEecCCHHHHHHHHHHHHHcC-CeEEEEee
Confidence 4444444443 6788888754432212 2 2888899999999998887655555544 4443 34566666
Q ss_pred ecCCCCCCCCHHHHHhcCCCEEeccch
Q 012478 286 EGGGKTPILNPLELEELGFKLVAYPLS 312 (462)
Q Consensus 286 ~~~g~tP~ls~~eL~~lGv~~V~yp~~ 312 (462)
. -.+|.--.++|+++|++.++|...
T Consensus 115 ~--~~~~~~~~~~l~~~gvd~~~~H~g 139 (217)
T COG0269 115 G--VWDPEQRAKWLKELGVDQVILHRG 139 (217)
T ss_pred c--CCCHHHHHHHHHHhCCCEEEEEec
Confidence 4 235555678899999999999765
No 443
>PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated
Probab=83.74 E-value=37 Score=37.32 Aligned_cols=153 Identities=16% Similarity=0.264 Sum_probs=88.5
Q ss_pred cCCcEEEeCCCCCCCHHHHHHH-HH-HHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeE
Q 012478 149 VSIPVIGDGDNGYGNAMNVKRT-VK-GYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIV 226 (462)
Q Consensus 149 ~~iPVIaD~DtGyG~~~nv~rt-Vk-~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~v 226 (462)
.++|||+|+--| +. +..+. ++ -|.+.|+++|.+--- .|. -.|.| +++ . .|.+.+
T Consensus 87 ~~~~vI~DaKrg--DI-~T~~~yA~a~f~~~~aDAiTv~py-----mG~---Dsl~p---fl~-------~---~~kgvf 142 (477)
T PRK05500 87 PDIPIILDAKHG--DL-NTSTIFAKTIFEQWQVDAVTLSPY-----AGQ---DHVAP---FLV-------Y---PDKGVF 142 (477)
T ss_pred cCCeEEEEeccc--Ch-HHHHHHHHHHHhhcCCCEEEECCc-----cCc---cchHH---HHh-------c---CCCcEE
Confidence 479999999887 33 12221 23 344689999988543 232 12222 221 1 146789
Q ss_pred EEEecchhhccc-----------HHHHHHHHHHhHhcCCcEEEecCCCCHHHHHHHHHhCCCCceeeeeeecCCCCCCCC
Q 012478 227 IVARTDSRQALS-----------LEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILN 295 (462)
Q Consensus 227 IiARTDA~~~~g-----------ldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls 295 (462)
|.++|-.-.+.. .++.+++++.+-..+..++++.+ +.+++++++.+..|..+.+ +++-| .-.=+
T Consensus 143 vL~~tSNpga~~~Q~~~~~g~~ly~~v~~~~~~~~~~~~~g~VvGA-T~p~~~~~iR~~~p~~~iL---~PGiG-AQGg~ 217 (477)
T PRK05500 143 ILCHTSNPGAIALQEYPTPENPFYLQVVKEAKTWGTPEQLGLEVGT-TNPEVLAKIRQIAPERLIL---LRSIW-AEKGN 217 (477)
T ss_pred EEEeCCCcCHHHHhhcccCCCcHHHHHHHHHHHhCCCCceEEEECC-CChHHHHHHHHhCCCCEEE---ccccc-cCCCC
Confidence 999987643222 34566777766555566666655 4467889888876543332 22211 11226
Q ss_pred HHHHHhcCCC------EEeccchHH-----HHHHHHHHHHHHHHHc
Q 012478 296 PLELEELGFK------LVAYPLSLI-----GVSVRAMQDALTAIKG 330 (462)
Q Consensus 296 ~~eL~~lGv~------~V~yp~~ll-----~aa~~Am~~~l~~l~~ 330 (462)
++++-+.|.+ ++..+-..+ ..+.+.+++.+.+++.
T Consensus 218 ~~~~~~~g~~~~~~g~li~v~R~il~a~~~~~~a~~l~~~i~~~~~ 263 (477)
T PRK05500 218 LNQILTAGLNSNGDGLLIPVPQDLLGAANLKEQVKSLREEINQIRQ 263 (477)
T ss_pred HHHHHHhhcccCcCceEEEeCHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 8888888875 566555543 4455666666666653
No 444
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=83.71 E-value=29 Score=36.12 Aligned_cols=85 Identities=12% Similarity=0.047 Sum_probs=50.4
Q ss_pred HHHHHHHHhCCcEEEec---cHHHHhhhccCC------CCCCCCHHH----HHHHHHHHHhhc------CCcEEEeC---
Q 012478 100 LSAKLVEKSGFSFCFTS---GFSISAARLALP------DTGFISYGE----MVDQGQLITQAV------SIPVIGDG--- 157 (462)
Q Consensus 100 lSArl~e~aGfdaI~vS---G~avSas~lG~P------D~g~vsl~E----ml~~~~~I~ra~------~iPVIaD~--- 157 (462)
-+|+.++++|||+|-+- |+-++- +.-| |.--=+++. +++.++.|.+++ +.||-+-+
T Consensus 148 ~aA~~a~~aGfDgVeih~ahGyLl~q--Flsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~ 225 (353)
T cd04735 148 EATRRAIEAGFDGVEIHGANGYLIQQ--FFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPE 225 (353)
T ss_pred HHHHHHHHcCCCEEEEccccchHHHH--hcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcc
Confidence 57788999999999775 454432 2222 321113432 233444555544 34454422
Q ss_pred ---CCCCCCHHHHHHHHHHHHHhCccEEEeCCC
Q 012478 158 ---DNGYGNAMNVKRTVKGYIKAGFAGIILEDQ 187 (462)
Q Consensus 158 ---DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq 187 (462)
+.|. +.++..+.++.++++|++.|++-..
T Consensus 226 ~~~~~g~-~~ee~~~i~~~L~~~GvD~I~Vs~g 257 (353)
T cd04735 226 EPEEPGI-RMEDTLALVDKLADKGLDYLHISLW 257 (353)
T ss_pred cccCCCC-CHHHHHHHHHHHHHcCCCEEEeccC
Confidence 2222 3567788899999999999999553
No 445
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=83.57 E-value=8.1 Score=38.29 Aligned_cols=84 Identities=18% Similarity=0.242 Sum_probs=58.5
Q ss_pred HHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhH
Q 012478 171 VKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFA 250 (462)
Q Consensus 171 Vk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~ 250 (462)
.+.++++|+.++-+-|-..--..|+.+ ..+++.+|++..++.+..+.. .-+++=-|.-. .+.+++.+-++.+.
T Consensus 22 A~~~e~~G~~ai~~s~~~~~~s~G~pD-~~~~~~~e~~~~~~~I~~~~~-----~Pv~~D~~~G~-g~~~~~~~~v~~~~ 94 (243)
T cd00377 22 ARLAERAGFKAIYTSGAGVAASLGLPD-GGLLTLDEVLAAVRRIARAVD-----LPVIADADTGY-GNALNVARTVRELE 94 (243)
T ss_pred HHHHHHcCCCEEEeccHHHHHhcCCCC-CCcCCHHHHHHHHHHHHhhcc-----CCEEEEcCCCC-CCHHHHHHHHHHHH
Confidence 467778999999998865221226544 357899999999999887753 22444333311 14466777788999
Q ss_pred hcCCcEEEecC
Q 012478 251 DAGADVLFIDA 261 (462)
Q Consensus 251 eAGAD~Ifie~ 261 (462)
++||++|.||.
T Consensus 95 ~~G~~gv~iED 105 (243)
T cd00377 95 EAGAAGIHIED 105 (243)
T ss_pred HcCCEEEEEec
Confidence 99999999953
No 446
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=83.46 E-value=12 Score=36.49 Aligned_cols=129 Identities=26% Similarity=0.211 Sum_probs=0.0
Q ss_pred HHHHHhCCCceEecccCChHHHHHHHHhCCcEEEec---cHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeC
Q 012478 81 LRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTS---GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDG 157 (462)
Q Consensus 81 LR~ll~~~~~iv~p~ayDalSArl~e~aGfdaI~vS---G~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~ 157 (462)
|-++++.| ++.-+-++-+|+++|++|.=++... .+-+=+. |-+..--=...++.|.++++|||++-.
T Consensus 9 la~mlkGG---VIMDV~n~eQAkIAE~AGA~AVMaLervPadiR~~-------GGVaRMsDP~~I~eI~~aVsIPVMAK~ 78 (208)
T PF01680_consen 9 LAQMLKGG---VIMDVTNAEQAKIAEEAGAVAVMALERVPADIRAA-------GGVARMSDPKMIKEIMDAVSIPVMAKV 78 (208)
T ss_dssp HHHTTTTE---EEEEESSHHHHHHHHHHT-SEEEE-SS-HHHHHHT-------TS---S--HHHHHHHHHH-SSEEEEEE
T ss_pred HHHHhcCC---eEEEecCHHHHHHHHHhCCeEEEEeccCCHhHHhc-------CCccccCCHHHHHHHHHheEeceeecc
Q ss_pred CCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHH--HHHHHHHHHHHHHhhCCCeEEEEecchhh
Q 012478 158 DNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREE--AVMRIKAAVDARKESGSDIVIVARTDSRQ 235 (462)
Q Consensus 158 DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee--~~~kI~AA~~Ar~~~g~d~vIiARTDA~~ 235 (462)
--|+ .--.+-|+..|++-| |.. ..|.|.++ ++.| .....+|+-=||.
T Consensus 79 RIGH------fvEAqiLealgVD~I---DES----------EVLTpAD~~~HI~K--------~~F~vPFVcGarn---- 127 (208)
T PF01680_consen 79 RIGH------FVEAQILEALGVDYI---DES----------EVLTPADEENHIDK--------HNFKVPFVCGARN---- 127 (208)
T ss_dssp ETT-------HHHHHHHHHTT-SEE---EEE----------TTS--S-SS----G--------GG-SS-EEEEESS----
T ss_pred ccce------eehhhhHHHhCCcee---ccc----------cccccccccccccc--------hhCCCCeEecCCC----
Q ss_pred cccHHHHHHHHHHhHhcCCcEE
Q 012478 236 ALSLEESLRRSRAFADAGADVL 257 (462)
Q Consensus 236 ~~gldeAI~RakAy~eAGAD~I 257 (462)
|-||++|.. -||.+|
T Consensus 128 ---LGEALRRI~----EGAaMI 142 (208)
T PF01680_consen 128 ---LGEALRRIA----EGAAMI 142 (208)
T ss_dssp ---HHHHHHHHH----TT-SEE
T ss_pred ---HHHHHhhHH----hhhhhh
No 447
>cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions.
Probab=83.46 E-value=40 Score=35.86 Aligned_cols=119 Identities=18% Similarity=0.263 Sum_probs=75.1
Q ss_pred HHHHHhhcCCcEEEeCCCCC-C-CHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHH-HH
Q 012478 142 GQLITQAVSIPVIGDGDNGY-G-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVD-AR 218 (462)
Q Consensus 142 ~~~I~ra~~iPVIaD~DtGy-G-~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~-Ar 218 (462)
+|++....+-||+.=+---. | ++.+..+.+.++...|++=|| .|.. ...++..|.+|-+..+..+++ +.
T Consensus 118 ~R~~lgv~~RPl~gtiiKP~~Glsp~~~a~~~y~~~~GG~D~IK-DDE~-------l~~q~~~p~~eRv~~~~~a~~~a~ 189 (366)
T cd08148 118 IRKLLGVYGRPLVGTIIKPKLGLNPKYTAEAAYAAALGGLDLIK-DDET-------LTDQPFCPLRDRITEVAAALDRVQ 189 (366)
T ss_pred HHHHhCCCCCceeEeecccccCCCHHHHHHHHHHHHhCCCCccc-cccc-------cCCCCCCcHHHHHHHHHHHHHHHH
Confidence 56666777899987765543 5 577888889999999998665 2332 233445566554444333332 23
Q ss_pred HhhCCC--eEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEecCCCC-HHHHHHHHHh
Q 012478 219 KESGSD--IVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALAS-KEEMKAFCEI 274 (462)
Q Consensus 219 ~~~g~d--~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~~~s-~eei~~i~~~ 274 (462)
++.|.. +.++- | .+.+|.++|++...++|+.++++.-... ..-++.+.+.
T Consensus 190 ~eTG~~~~y~~Ni-T-----~~~~em~~ra~~~~~~G~~~~mv~~~~~G~~~l~~l~~~ 242 (366)
T cd08148 190 EETGEKKLYAVNV-T-----AGTFEIIERAERALELGANMLMVDVLTAGFSALQALAED 242 (366)
T ss_pred HhhCCcceEEEEc-c-----CCHHHHHHHHHHHHHhCCCEEEEeccccchHHHHHHHHh
Confidence 334422 22221 2 1348999999999999999999976543 3456666663
No 448
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=83.44 E-value=35 Score=32.09 Aligned_cols=121 Identities=14% Similarity=0.103 Sum_probs=66.0
Q ss_pred ChH--HHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHH
Q 012478 98 DAL--SAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYI 175 (462)
Q Consensus 98 Dal--SArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~ 175 (462)
|+. .++.+.++|+|++.+-+.. + ..++.++++. ++..++++++++-+- ..+ .+-++.+.
T Consensus 63 d~~~~~~~~~~~~Gad~i~vh~~~--------~---~~~~~~~i~~----~~~~g~~~~~~~~~~-~t~---~~~~~~~~ 123 (206)
T TIGR03128 63 DAGEYEAEQAFAAGADIVTVLGVA--------D---DATIKGAVKA----AKKHGKEVQVDLINV-KDK---VKRAKELK 123 (206)
T ss_pred cchHHHHHHHHHcCCCEEEEeccC--------C---HHHHHHHHHH----HHHcCCEEEEEecCC-CCh---HHHHHHHH
Confidence 554 6777888999988765421 1 0122333333 344589999986442 222 23334456
Q ss_pred HhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCc
Q 012478 176 KAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGAD 255 (462)
Q Consensus 176 ~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD 255 (462)
+.|++-|.+.-.. . ++...+ ...++|+.++..... ..+.+.+-.. .+.+..+.++|||
T Consensus 124 ~~g~d~v~~~pg~-------~-~~~~~~--~~~~~i~~l~~~~~~--~~i~v~GGI~----------~~n~~~~~~~Ga~ 181 (206)
T TIGR03128 124 ELGADYIGVHTGL-------D-EQAKGQ--NPFEDLQTILKLVKE--ARVAVAGGIN----------LDTIPDVIKLGPD 181 (206)
T ss_pred HcCCCEEEEcCCc-------C-cccCCC--CCHHHHHHHHHhcCC--CcEEEECCcC----------HHHHHHHHHcCCC
Confidence 6799999885321 1 111111 124566666554431 2333333321 2356688899999
Q ss_pred EEEe
Q 012478 256 VLFI 259 (462)
Q Consensus 256 ~Ifi 259 (462)
.+.+
T Consensus 182 ~v~v 185 (206)
T TIGR03128 182 IVIV 185 (206)
T ss_pred EEEE
Confidence 8887
No 449
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=83.39 E-value=3.9 Score=40.87 Aligned_cols=115 Identities=11% Similarity=0.084 Sum_probs=71.2
Q ss_pred CeEEEEecchhhc-cc----HHHHHHHHHHhHhcCCcEEEecC-----CCCHHHHHHHHHhCCCCceeeeeeecCCCCCC
Q 012478 224 DIVIVARTDSRQA-LS----LEESLRRSRAFADAGADVLFIDA-----LASKEEMKAFCEISPLVPKMANMLEGGGKTPI 293 (462)
Q Consensus 224 d~vIiARTDA~~~-~g----ldeAI~RakAy~eAGAD~Ifie~-----~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ 293 (462)
.+-|||--..... .+ -.+..+-|++|+++||++|.+.. ..+.+.++.+.+.+. +|++..- --++.
T Consensus 49 ~~~vIaeik~~sps~g~i~~~~~~~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~v~~~v~-iPvl~kd----fi~~~ 123 (260)
T PRK00278 49 KPAVIAEVKKASPSKGVIREDFDPVEIAKAYEAGGAACLSVLTDERFFQGSLEYLRAARAAVS-LPVLRKD----FIIDP 123 (260)
T ss_pred CCeEEEEeeCCCCCCCccCCCCCHHHHHHHHHhCCCeEEEEecccccCCCCHHHHHHHHHhcC-CCEEeee----ecCCH
Confidence 4677766544221 11 12456789999999999998832 246788999888775 6776321 12333
Q ss_pred CCHHHHHhcCCCEEeccchHHHHHHHHHHHHHHHHHcCCCCCCCCCCCHHHH
Q 012478 294 LNPLELEELGFKLVAYPLSLIGVSVRAMQDALTAIKGGRIPSPGSMPSFQEI 345 (462)
Q Consensus 294 ls~~eL~~lGv~~V~yp~~ll~aa~~Am~~~l~~l~~g~~~~~~~~~s~~e~ 345 (462)
+-..+..++|...|..-...+.. ..+++.+...+.-+........+.+|+
T Consensus 124 ~qi~~a~~~GAD~VlLi~~~l~~--~~l~~li~~a~~lGl~~lvevh~~~E~ 173 (260)
T PRK00278 124 YQIYEARAAGADAILLIVAALDD--EQLKELLDYAHSLGLDVLVEVHDEEEL 173 (260)
T ss_pred HHHHHHHHcCCCEEEEEeccCCH--HHHHHHHHHHHHcCCeEEEEeCCHHHH
Confidence 46788999999999998777543 344555555544233332233455555
No 450
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=83.37 E-value=23 Score=38.91 Aligned_cols=150 Identities=20% Similarity=0.148 Sum_probs=90.8
Q ss_pred HHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCC--CHHHHHHHHHHHHHhCc
Q 012478 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYG--NAMNVKRTVKGYIKAGF 179 (462)
Q Consensus 102 Arl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG--~~~nv~rtVk~l~~AGa 179 (462)
|+.+.++|++.|=++..+.+ -.| .+.+++|+.....|-++ +++ ....+.++++.+..+++
T Consensus 29 a~~L~~~GV~~IEvG~p~~s-------------~~d-~e~v~~i~~~~~~~~i~----al~r~~~~did~a~~al~~~~~ 90 (494)
T TIGR00973 29 ALALERLGVDIIEAGFPVSS-------------PGD-FEAVQRIARTVKNPRVC----GLARCVEKDIDAAAEALKPAEK 90 (494)
T ss_pred HHHHHHcCCCEEEEECCCCC-------------HHH-HHHHHHHHHhCCCCEEE----EEcCCCHHhHHHHHHhccccCC
Confidence 56777899999876532211 122 23446665443333322 233 34567666666667788
Q ss_pred cEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEe
Q 012478 180 AGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFI 259 (462)
Q Consensus 180 aGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifi 259 (462)
..|+|--.+++- |...+-=.+.+|.++++..+++-.++.|..+.+-+ -|+. ..+.+.+++-+++..++|||.|.+
T Consensus 91 ~~v~i~~~~S~~---h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~-Ed~~-r~d~~~l~~~~~~~~~~Ga~~i~l 165 (494)
T TIGR00973 91 FRIHTFIATSPI---HLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFSC-EDAG-RTEIPFLARIVEAAINAGATTINI 165 (494)
T ss_pred CEEEEEEccCHH---HHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEc-CCCC-CCCHHHHHHHHHHHHHcCCCEEEe
Confidence 999996655432 22111123578888888888777766554333222 2332 235788899999999999999988
Q ss_pred c---CCCCHHHHHHHHHh
Q 012478 260 D---ALASKEEMKAFCEI 274 (462)
Q Consensus 260 e---~~~s~eei~~i~~~ 274 (462)
. +...++++.++.+.
T Consensus 166 ~DTvG~~~P~~~~~~i~~ 183 (494)
T TIGR00973 166 PDTVGYALPAEYGNLIKG 183 (494)
T ss_pred CCCCCCCCHHHHHHHHHH
Confidence 6 34566666666654
No 451
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=83.14 E-value=30 Score=34.94 Aligned_cols=153 Identities=12% Similarity=0.115 Sum_probs=86.0
Q ss_pred HHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccE
Q 012478 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAG 181 (462)
Q Consensus 102 Arl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaG 181 (462)
|+.+.++|++.|=++++... --.|-. -..+++ .+.+.+..+.-+. ++.. ..+-+++..++|+..
T Consensus 26 ~~~L~~~Gv~~IEvGs~~~~---~~~p~~--~d~~~~---~~~l~~~~~~~~~-----~~~~---~~~dv~~A~~~g~~~ 89 (274)
T cd07938 26 IDALSAAGLRRIEVTSFVSP---KWVPQM--ADAEEV---LAGLPRRPGVRYS-----ALVP---NLRGAERALAAGVDE 89 (274)
T ss_pred HHHHHHcCCCEEEeCCCCCc---cccccc--CCHHHH---HhhcccCCCCEEE-----EECC---CHHHHHHHHHcCcCE
Confidence 45677899999999875311 113422 123333 3333221121111 1110 234567778899999
Q ss_pred EEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchh-----hcccHHHHHHHHHHhHhcCCcE
Q 012478 182 IILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSR-----QALSLEESLRRSRAFADAGADV 256 (462)
Q Consensus 182 I~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~-----~~~gldeAI~RakAy~eAGAD~ 256 (462)
|+|-....+ .|...+-=.+.++..+++..+++..++.|....+. =+.+. .....+..++-++.+.++|||.
T Consensus 90 i~i~~~~Sd---~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~-i~~~f~~~~~~~~~~~~~~~~~~~~~~~Ga~~ 165 (274)
T cd07938 90 VAVFVSASE---TFSQKNINCSIAESLERFEPVAELAKAAGLRVRGY-VSTAFGCPYEGEVPPERVAEVAERLLDLGCDE 165 (274)
T ss_pred EEEEEecCH---HHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEE-EEeEecCCCCCCCCHHHHHHHHHHHHHcCCCE
Confidence 999877643 12211111345777788777777766644322211 11111 1235688889999999999999
Q ss_pred EEec---CCCCHHHHHHHHHh
Q 012478 257 LFID---ALASKEEMKAFCEI 274 (462)
Q Consensus 257 Ifie---~~~s~eei~~i~~~ 274 (462)
|.+. |.-++.++.++.+.
T Consensus 166 i~l~DT~G~~~P~~v~~lv~~ 186 (274)
T cd07938 166 ISLGDTIGVATPAQVRRLLEA 186 (274)
T ss_pred EEECCCCCccCHHHHHHHHHH
Confidence 9885 34566777766654
No 452
>PLN02826 dihydroorotate dehydrogenase
Probab=83.07 E-value=17 Score=39.00 Aligned_cols=128 Identities=11% Similarity=0.131 Sum_probs=72.6
Q ss_pred CHHHHHHHHHHHHh------hcCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCC---------CC--CCCCC
Q 012478 134 SYGEMVDQGQLITQ------AVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVS---------PK--GCGHT 196 (462)
Q Consensus 134 sl~Eml~~~~~I~r------a~~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~---------PK--rCGH~ 196 (462)
.+.+++..++...+ ...+||++=+---. ...++...++.++++|++||.+-..+. +. ..|-.
T Consensus 240 ~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPdl-~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGl 318 (409)
T PLN02826 240 QLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPDL-SKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGL 318 (409)
T ss_pred HHHHHHHHHHHHHHHhhhccccCCceEEecCCCC-CHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCc
Confidence 34566666655543 24699999652211 234567777888899999998876431 11 23445
Q ss_pred CCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEecCC---CCHHHHHHHHH
Q 012478 197 RGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDAL---ASKEEMKAFCE 273 (462)
Q Consensus 197 ~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~~---~s~eei~~i~~ 273 (462)
.|+++.+.. .+.|+.+.++ .+.++-|++=.--. .-+ .+..+..|||++|.+-.- ..+..+.++.+
T Consensus 319 SG~pl~~~s--l~~v~~l~~~---~~~~ipIIgvGGI~---sg~----Da~e~i~AGAs~VQv~Ta~~~~Gp~~i~~I~~ 386 (409)
T PLN02826 319 SGKPLFDLS--TEVLREMYRL---TRGKIPLVGCGGVS---SGE----DAYKKIRAGASLVQLYTAFAYEGPALIPRIKA 386 (409)
T ss_pred CCccccHHH--HHHHHHHHHH---hCCCCcEEEECCCC---CHH----HHHHHHHhCCCeeeecHHHHhcCHHHHHHHHH
Confidence 677777653 3344433333 23456677643222 223 355677799999987421 22344555544
Q ss_pred h
Q 012478 274 I 274 (462)
Q Consensus 274 ~ 274 (462)
.
T Consensus 387 e 387 (409)
T PLN02826 387 E 387 (409)
T ss_pred H
Confidence 4
No 453
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=83.01 E-value=36 Score=34.76 Aligned_cols=125 Identities=22% Similarity=0.302 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHHHHH-hhcCCcEEEeCCCCCCCH---HHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHH
Q 012478 131 GFISYGEMVDQGQLIT-QAVSIPVIGDGDNGYGNA---MNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREE 206 (462)
Q Consensus 131 g~vsl~Eml~~~~~I~-ra~~iPVIaD~DtGyG~~---~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee 206 (462)
..+++++.++.++.+. ....+|++. .+|-|+ ..+.+-++++.++|++|+.+=| +|.||
T Consensus 74 ~g~t~~~~lel~~~~r~~~~~~Pivl---m~Y~Npi~~~Gie~F~~~~~~~GvdGlivpD---------------LP~ee 135 (265)
T COG0159 74 AGVTLEDTLELVEEIRAKGVKVPIVL---MTYYNPIFNYGIEKFLRRAKEAGVDGLLVPD---------------LPPEE 135 (265)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCCEEE---EEeccHHHHhhHHHHHHHHHHcCCCEEEeCC---------------CChHH
Q ss_pred HH-----------------------HHHHHHHHHHHhhCCCeEEEEecchhhcccH-----HHHHHHHHHhHhcCCcEEE
Q 012478 207 AV-----------------------MRIKAAVDARKESGSDIVIVARTDSRQALSL-----EESLRRSRAFADAGADVLF 258 (462)
Q Consensus 207 ~~-----------------------~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gl-----deAI~RakAy~eAGAD~If 258 (462)
.. +||+...+..+ +-...+.|+-...+..- .+.|+|.+.|. ..-+++
T Consensus 136 ~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~---GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~--~~Pv~v 210 (265)
T COG0159 136 SDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAAS---GFIYYVSRMGVTGARNPVSADVKELVKRVRKYT--DVPVLV 210 (265)
T ss_pred HHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCC---CcEEEEecccccCCCcccchhHHHHHHHHHHhc--CCCeEE
Q ss_pred ecCCCCHHHHHHHHHhCCCC
Q 012478 259 IDALASKEEMKAFCEISPLV 278 (462)
Q Consensus 259 ie~~~s~eei~~i~~~v~~v 278 (462)
==++.+.++++++.+.-.++
T Consensus 211 GFGIs~~e~~~~v~~~ADGV 230 (265)
T COG0159 211 GFGISSPEQAAQVAEAADGV 230 (265)
T ss_pred ecCcCCHHHHHHHHHhCCeE
No 454
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=82.89 E-value=14 Score=38.53 Aligned_cols=168 Identities=25% Similarity=0.292 Sum_probs=102.5
Q ss_pred EecccCChHHHHHHH------HhCCcEEEeccHHHHhhhccCCCC-CCCCHH---HHHHHHHHHHhhc-CCcEEEeC---
Q 012478 92 QGPACFDALSAKLVE------KSGFSFCFTSGFSISAARLALPDT-GFISYG---EMVDQGQLITQAV-SIPVIGDG--- 157 (462)
Q Consensus 92 v~p~ayDalSArl~e------~aGfdaI~vSG~avSas~lG~PD~-g~vsl~---Eml~~~~~I~ra~-~iPVIaD~--- 157 (462)
.|||.|=..--.+++ +.|..++.+=|.. . ..|. +.-.++ =+...++.|.+.. ++-||+|.
T Consensus 41 sMPG~~r~s~d~l~~~~~~~~~~Gi~~v~LFgv~---~---~Kd~~gs~A~~~~g~v~~air~iK~~~p~l~vi~DvcLc 114 (314)
T cd00384 41 SMPGVYRLSVDSLVEEAEELADLGIRAVILFGIP---E---HKDEIGSEAYDPDGIVQRAIRAIKEAVPELVVITDVCLC 114 (314)
T ss_pred CCCCceeeCHHHHHHHHHHHHHCCCCEEEEECCC---C---CCCCCcccccCCCChHHHHHHHHHHhCCCcEEEEeeecc
Confidence 577776544444433 4588888876531 0 1222 222222 1455667777766 47788884
Q ss_pred ---CCCC------C---CHHHHH---HHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhC
Q 012478 158 ---DNGY------G---NAMNVK---RTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESG 222 (462)
Q Consensus 158 ---DtGy------G---~~~nv~---rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g 222 (462)
++|+ | |...+. +..-.+.+|||+-|-=-|- |+ .||.|++++.++.|
T Consensus 115 ~YT~hGHcGil~~~~idND~Tl~~L~k~Als~A~AGADiVAPSdM--------MD-----------GrV~aIR~aLd~~g 175 (314)
T cd00384 115 EYTDHGHCGILKDDYVDNDATLELLAKIAVSHAEAGADIVAPSDM--------MD-----------GRVAAIREALDEAG 175 (314)
T ss_pred CCCCCCcceeccCCcCccHHHHHHHHHHHHHHHHcCCCeeecccc--------cc-----------cHHHHHHHHHHHCC
Confidence 3343 1 333333 3344556899977755442 33 36666666665544
Q ss_pred -CCeEEEEecchhh--------------------------cccHHHHHHHHHHhHhcCCcEEEe-cCCCCHHHHHHHHHh
Q 012478 223 -SDIVIVARTDSRQ--------------------------ALSLEESLRRSRAFADAGADVLFI-DALASKEEMKAFCEI 274 (462)
Q Consensus 223 -~d~vIiARTDA~~--------------------------~~gldeAI~RakAy~eAGAD~Ifi-e~~~s~eei~~i~~~ 274 (462)
.+.-|++-+--++ ...-.||++.+..=.+-|||+|+| |+++-.+.++++.+.
T Consensus 176 ~~~v~ImsYsaKyaSafYGPFRdAa~Sap~~gDRktYQmdpan~~eAlre~~~D~~EGAD~lMVKPal~YLDIi~~~k~~ 255 (314)
T cd00384 176 FSDVPIMSYSAKYASAFYGPFRDAADSAPSFGDRKTYQMDPANRREALREVELDIEEGADILMVKPALAYLDIIRDVRER 255 (314)
T ss_pred CCCCceeecHHHhhhhccchHHHHhhcCCCCCCccccCCCCCCHHHHHHHHHhhHHhCCCEEEEcCCchHHHHHHHHHHh
Confidence 3456666543321 013588999999999999999999 788999999999988
Q ss_pred CCCCceeeeee
Q 012478 275 SPLVPKMANML 285 (462)
Q Consensus 275 v~~vP~~~N~l 285 (462)
+. +|+.+=.+
T Consensus 256 ~~-~PvaaYqV 265 (314)
T cd00384 256 FD-LPVAAYNV 265 (314)
T ss_pred cC-CCEEEEEc
Confidence 74 67654433
No 455
>PRK10200 putative racemase; Provisional
Probab=82.69 E-value=16 Score=35.94 Aligned_cols=99 Identities=13% Similarity=0.113 Sum_probs=60.8
Q ss_pred cCHHHHHHHHHHHHHHHHhh-CCCeEEEEecc------hhh----cccHHHHHHHHHHhHhcCCcEEEecCCCCHHHHHH
Q 012478 202 VSREEAVMRIKAAVDARKES-GSDIVIVARTD------SRQ----ALSLEESLRRSRAFADAGADVLFIDALASKEEMKA 270 (462)
Q Consensus 202 vp~ee~~~kI~AA~~Ar~~~-g~d~vIiARTD------A~~----~~gldeAI~RakAy~eAGAD~Ifie~~~s~eei~~ 270 (462)
....++..||.....++.+- ..+.++.--.+ ... ...++..++-++.++++|||+|++.|-+....+.+
T Consensus 13 ~aT~~~~~~i~~~t~a~~d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~L~~~g~~~iviaCNTah~~~~~ 92 (230)
T PRK10200 13 ESTIPYYRLINEGIKQRLGGLHSAQLLLHSVDFHEIEECQRRGEWDKTGDILAEAALGLQRAGAEGIVLCTNTMHKVADA 92 (230)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCChHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCEEEECCchHHHHHHH
Confidence 34456666776666554321 12333333222 111 11345566778888999999999999766556677
Q ss_pred HHHhCCCCceeeeeeecCCCCCCCCHHHHHhcCCCEEec
Q 012478 271 FCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAY 309 (462)
Q Consensus 271 i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~y 309 (462)
+.+.++ +|. +||++. +...+++.|.++|-.
T Consensus 93 l~~~~~-iPi-i~ii~~-------~~~~~~~~~~~~Vgl 122 (230)
T PRK10200 93 IESRCS-LPF-LHIADA-------TGRAITGAGMTRVAL 122 (230)
T ss_pred HHHhCC-CCE-eehHHH-------HHHHHHHcCCCeEEE
Confidence 777765 674 577652 556777778877654
No 456
>PRK07695 transcriptional regulator TenI; Provisional
Probab=82.67 E-value=9.8 Score=36.04 Aligned_cols=95 Identities=22% Similarity=0.298 Sum_probs=59.7
Q ss_pred HHHHHHHHhCCCceEecccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeC
Q 012478 78 AKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDG 157 (462)
Q Consensus 78 a~~LR~ll~~~~~iv~p~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~ 157 (462)
.+.+|+.+ ++.++...|++.-.++.++++|+|.+..+-..-+.+ .|+.....+ ...+.+....++||++=
T Consensus 86 ~~~~r~~~--~~~~ig~s~~s~e~a~~a~~~Gadyi~~g~v~~t~~---k~~~~~~g~----~~l~~~~~~~~ipvia~- 155 (201)
T PRK07695 86 VRSVREKF--PYLHVGYSVHSLEEAIQAEKNGADYVVYGHVFPTDC---KKGVPARGL----EELSDIARALSIPVIAI- 155 (201)
T ss_pred HHHHHHhC--CCCEEEEeCCCHHHHHHHHHcCCCEEEECCCCCCCC---CCCCCCCCH----HHHHHHHHhCCCCEEEE-
Confidence 45667655 355666699999899999999999998762111111 232222333 33455556668999974
Q ss_pred CCCCCCHHHHHHHHHHHHHhCccEEEeCCCC
Q 012478 158 DNGYGNAMNVKRTVKGYIKAGFAGIILEDQV 188 (462)
Q Consensus 158 DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~ 188 (462)
.|- ++ ++++.+.++|++||-+=...
T Consensus 156 -GGI-~~----~~~~~~~~~Ga~gvav~s~i 180 (201)
T PRK07695 156 -GGI-TP----ENTRDVLAAGVSGIAVMSGI 180 (201)
T ss_pred -cCC-CH----HHHHHHHHcCCCEEEEEHHH
Confidence 111 34 34567778999999885543
No 457
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=82.56 E-value=20 Score=37.25 Aligned_cols=138 Identities=18% Similarity=0.170 Sum_probs=81.9
Q ss_pred HHHHHhC-CcEEEec-cHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHHhCcc
Q 012478 103 KLVEKSG-FSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFA 180 (462)
Q Consensus 103 rl~e~aG-fdaI~vS-G~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaa 180 (462)
+.+++++ ++++=+= |.-- .-|.++.+ ...+.+-..++.+.+.+.+||.+=+-= +..++...++.++++|++
T Consensus 116 ~~~~~~~~ad~ielNiScPn---t~g~~~l~-~~~e~l~~l~~~vk~~~~~Pv~vKl~P---~~~di~~iA~~~~~~g~D 188 (310)
T COG0167 116 RLLEEAGDADAIELNISCPN---TPGGRALG-QDPELLEKLLEAVKAATKVPVFVKLAP---NITDIDEIAKAAEEAGAD 188 (310)
T ss_pred HHHHhcCCCCEEEEEccCCC---CCChhhhc-cCHHHHHHHHHHHHhcccCceEEEeCC---CHHHHHHHHHHHHHcCCc
Confidence 5566777 6766543 2221 12333332 122233334556666677999998755 677888999999999999
Q ss_pred EEEeCCCCC--------C---C---CCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHH
Q 012478 181 GIILEDQVS--------P---K---GCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRS 246 (462)
Q Consensus 181 GI~IEDq~~--------P---K---rCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~Ra 246 (462)
||.+--.+. + + .-|-+.|+++.|.. .+-|+.. ++..++++-|++=-- ....++ |
T Consensus 189 gl~~~NT~~~~~~id~~~~~~~~~~~~GGLSG~~ikp~a--l~~v~~l---~~~~~~~ipIIGvGG---I~s~~D----A 256 (310)
T COG0167 189 GLIAINTTKSGMKIDLETKKPVLANETGGLSGPPLKPIA--LRVVAEL---YKRLGGDIPIIGVGG---IETGED----A 256 (310)
T ss_pred EEEEEeeccccccccccccccccCcCCCCcCcccchHHH--HHHHHHH---HHhcCCCCcEEEecC---cCcHHH----H
Confidence 998766442 1 1 12335678887764 3333322 333456788886422 223344 5
Q ss_pred HHhHhcCCcEEEe
Q 012478 247 RAFADAGADVLFI 259 (462)
Q Consensus 247 kAy~eAGAD~Ifi 259 (462)
..+..|||++|-+
T Consensus 257 ~E~i~aGA~~vQv 269 (310)
T COG0167 257 LEFILAGASAVQV 269 (310)
T ss_pred HHHHHcCCchhee
Confidence 5567799998754
No 458
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=82.53 E-value=10 Score=35.45 Aligned_cols=95 Identities=17% Similarity=0.204 Sum_probs=60.0
Q ss_pred HHHHHHHhCCCceEecccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCC-CCHHHHHHHHHHHHhhcC-CcEEEe
Q 012478 79 KSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGF-ISYGEMVDQGQLITQAVS-IPVIGD 156 (462)
Q Consensus 79 ~~LR~ll~~~~~iv~p~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~-vsl~Eml~~~~~I~ra~~-iPVIaD 156 (462)
..+++++. .+..+...|++...++.+.+.|+|.|.++.+--+ ...|+... .. ++..+.+++..+ +||+++
T Consensus 95 ~~~~~~~~-~~~~~g~~~~t~~e~~~a~~~gaD~v~~~~~~~~---~~~~~~~~~~g----~~~~~~~~~~~~~~~v~a~ 166 (212)
T PRK00043 95 ADARALLG-PDAIIGLSTHTLEEAAAALAAGADYVGVGPIFPT---PTKKDAKAPQG----LEGLREIRAAVGDIPIVAI 166 (212)
T ss_pred HHHHHHcC-CCCEEEEeCCCHHHHHHHhHcCCCEEEECCccCC---CCCCCCCCCCC----HHHHHHHHHhcCCCCEEEE
Confidence 44555443 3455566788888888888999999988843221 11222211 12 233445555555 999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCccEEEeCCCC
Q 012478 157 GDNGYGNAMNVKRTVKGYIKAGFAGIILEDQV 188 (462)
Q Consensus 157 ~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~ 188 (462)
|+.. .++++.+.++|++||-+-...
T Consensus 167 -----GGI~--~~~i~~~~~~Ga~gv~~gs~i 191 (212)
T PRK00043 167 -----GGIT--PENAPEVLEAGADGVAVVSAI 191 (212)
T ss_pred -----CCcC--HHHHHHHHHcCCCEEEEeHHh
Confidence 3321 266778889999999986554
No 459
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=82.43 E-value=24 Score=36.84 Aligned_cols=141 Identities=16% Similarity=0.134 Sum_probs=78.8
Q ss_pred CHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHHhC--ccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHH
Q 012478 134 SYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAG--FAGIILEDQVSPKGCGHTRGRKVVSREEAVMRI 211 (462)
Q Consensus 134 sl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~AG--aaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI 211 (462)
+.++....++.+.. ..+ ++=+=-|+. .+-.+-+..+.++| ++.|.| |-. -||. +.+++.|
T Consensus 67 ~~E~~~sfvrk~k~-~~L--~v~~SvG~t--~e~~~r~~~lv~a~~~~d~i~~-D~a----hg~s--------~~~~~~i 128 (321)
T TIGR01306 67 DEESRIPFIKDMQE-RGL--FASISVGVK--ACEYEFVTQLAEEALTPEYITI-DIA----HGHS--------NSVINMI 128 (321)
T ss_pred CHHHHHHHHHhccc-ccc--EEEEEcCCC--HHHHHHHHHHHhcCCCCCEEEE-eCc----cCch--------HHHHHHH
Confidence 56665555444321 123 343333433 23345566778888 688888 554 3664 3456666
Q ss_pred HHHHHHHHhhCCCe-EEEEecchhhcccHHHHHHHHHHhHhcCCcEEEec---------------CCC--CHHHHHHHHH
Q 012478 212 KAAVDARKESGSDI-VIVARTDSRQALSLEESLRRSRAFADAGADVLFID---------------ALA--SKEEMKAFCE 273 (462)
Q Consensus 212 ~AA~~Ar~~~g~d~-vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie---------------~~~--s~eei~~i~~ 273 (462)
+.+++.- +.. +|.+-+.. .+.|+...++|||+|.+. +.. ...-+.++.+
T Consensus 129 ~~i~~~~----p~~~vi~GnV~t---------~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~~l~ai~ev~~ 195 (321)
T TIGR01306 129 KHIKTHL----PDSFVIAGNVGT---------PEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAK 195 (321)
T ss_pred HHHHHhC----CCCEEEEecCCC---------HHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCchHHHHHHHHHH
Confidence 6665543 344 55554542 446888999999999876 122 1234455555
Q ss_pred hCCCCceeeeeeecCCCCCCCCHHHHHhcCCCEEecc
Q 012478 274 ISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYP 310 (462)
Q Consensus 274 ~v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp 310 (462)
... +|+++ .||-.-..+....-.+|.+.|-.+
T Consensus 196 a~~-~pVIa----dGGIr~~~Di~KALa~GAd~Vmig 227 (321)
T TIGR01306 196 AAR-KPIIA----DGGIRTHGDIAKSIRFGASMVMIG 227 (321)
T ss_pred hcC-CeEEE----ECCcCcHHHHHHHHHcCCCEEeec
Confidence 443 45443 345333345555556788888776
No 460
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=82.34 E-value=49 Score=34.61 Aligned_cols=217 Identities=22% Similarity=0.240 Sum_probs=126.2
Q ss_pred hHHHHHHHHhCCCceEecccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEe
Q 012478 77 PAKSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGD 156 (462)
Q Consensus 77 ~a~~LR~ll~~~~~iv~p~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD 156 (462)
.-+.|.+.-++-+...+-++||.-++.++++.|.+++-++|.-+.. -.++ +.+++ ++.|||.-
T Consensus 77 ~~~~L~~~~~~~Gi~~~stpfd~~svd~l~~~~v~~~KIaS~~~~n-------------~pLL---~~~A~-~gkPvilS 139 (329)
T TIGR03569 77 DHRELKEYCESKGIEFLSTPFDLESADFLEDLGVPRFKIPSGEITN-------------APLL---KKIAR-FGKPVILS 139 (329)
T ss_pred HHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCCCEEEECcccccC-------------HHHH---HHHHh-cCCcEEEE
Confidence 3445666666778889999999999999999999999999855421 2233 33333 58999976
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCccE--E-EeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecch
Q 012478 157 GDNGYGNAMNVKRTVKGYIKAGFAG--I-ILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDS 233 (462)
Q Consensus 157 ~DtGyG~~~nv~rtVk~l~~AGaaG--I-~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA 233 (462)
+|..+...+.+.++.+.+.|... | .+. |... .+ .|.+++ .++++..-++.. ++ .++=.|.
T Consensus 140 --tGmatl~Ei~~Av~~i~~~G~~~~~i~llh-------C~s~--YP-~~~~~~--nL~~I~~Lk~~f--~~-pVG~SdH 202 (329)
T TIGR03569 140 --TGMATLEEIEAAVGVLRDAGTPDSNITLLH-------CTTE--YP-APFEDV--NLNAMDTLKEAF--DL-PVGYSDH 202 (329)
T ss_pred --CCCCCHHHHHHHHHHHHHcCCCcCcEEEEE-------ECCC--CC-CCcccC--CHHHHHHHHHHh--CC-CEEECCC
Confidence 77777788999999998888642 2 222 2211 01 122221 333333333332 23 3333454
Q ss_pred hhcccHHHHHHHHHHhHhcCCcEEEec--------CC-----CCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHH
Q 012478 234 RQALSLEESLRRSRAFADAGADVLFID--------AL-----ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELE 300 (462)
Q Consensus 234 ~~~~gldeAI~RakAy~eAGAD~Ifie--------~~-----~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~ 300 (462)
.. | +.-+.+...+||++|=-| +. -+++|++++++.+..+ -.++..+.+ ..+..|..
T Consensus 203 t~--G----~~~~~aAvalGA~iIEkH~tldk~~~G~D~~~Sl~p~el~~lv~~ir~~---~~~lG~~~k--~~~~~E~~ 271 (329)
T TIGR03569 203 TL--G----IEAPIAAVALGATVIEKHFTLDKNLPGPDHKASLEPDELKEMVQGIRNV---EKALGDGVK--RPTPSEQK 271 (329)
T ss_pred Cc--c----HHHHHHHHHcCCCEEEeCCChhhcCCCCChhhcCCHHHHHHHHHHHHHH---HHHcCCCCC--CcCHHHHH
Confidence 32 3 346788889999954222 11 1367888888765321 122222223 34666666
Q ss_pred hcCC-CEEeccchHHHHHHHHHHHHHHHHHcCCC--------CCCCCCCCHHHHHHhcCcc
Q 012478 301 ELGF-KLVAYPLSLIGVSVRAMQDALTAIKGGRI--------PSPGSMPSFQEIKETLGFN 352 (462)
Q Consensus 301 ~lGv-~~V~yp~~ll~aa~~Am~~~l~~l~~g~~--------~~~~~~~s~~e~~~lvg~~ 352 (462)
..-+ +|-+|.. +.|+.|.. -.++..++-.++.+++|-.
T Consensus 272 ~~~~~rrsl~a~--------------~di~~G~~lt~~~l~~~RP~~Gi~p~~~~~v~G~~ 318 (329)
T TIGR03569 272 NRDVARKSLVAA--------------KDIKKGEIFTEDNLTVKRPGNGISPMEYWEVIGKK 318 (329)
T ss_pred HHHhcceEEEEc--------------cCcCCCCEecHHheeeeCCCCCCCHhHHHHhcCce
Confidence 6656 5566533 33444421 1233346677888888744
No 461
>PRK08508 biotin synthase; Provisional
Probab=82.26 E-value=34 Score=34.43 Aligned_cols=126 Identities=19% Similarity=0.156 Sum_probs=72.5
Q ss_pred HHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhc-CCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEE
Q 012478 105 VEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAV-SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGII 183 (462)
Q Consensus 105 ~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~-~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~ 183 (462)
+.+.|+..+.+...+ .+++| ..++-+++.++.|.+.. ++.+.+ =.|+-+ .+..++|.+||++.++
T Consensus 52 a~~~g~~~~~lv~sg-----~~~~~---~~~e~~~ei~~~ik~~~p~l~i~~--s~G~~~----~e~l~~Lk~aGld~~~ 117 (279)
T PRK08508 52 AKANGALGFCLVTSG-----RGLDD---KKLEYVAEAAKAVKKEVPGLHLIA--CNGTAS----VEQLKELKKAGIFSYN 117 (279)
T ss_pred HHHCCCCEEEEEecc-----CCCCc---ccHHHHHHHHHHHHhhCCCcEEEe--cCCCCC----HHHHHHHHHcCCCEEc
Confidence 334587766542112 24444 36777788888887553 444433 246554 5566788899999999
Q ss_pred eCCCCC----CCCCC-CCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEE
Q 012478 184 LEDQVS----PKGCG-HTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVL 257 (462)
Q Consensus 184 IEDq~~----PKrCG-H~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~I 257 (462)
+-..+. |+.|. | +.++.++.|+.|+++.-+. .-.+|++=- +..+|.++-+....+.+.|.|
T Consensus 118 ~~lEt~~~~~~~i~~~~-------~~~~~l~~i~~a~~~Gi~v-~sg~I~GlG-----Et~ed~~~~l~~lr~L~~~sv 183 (279)
T PRK08508 118 HNLETSKEFFPKICTTH-------TWEERFQTCENAKEAGLGL-CSGGIFGLG-----ESWEDRISFLKSLASLSPHST 183 (279)
T ss_pred ccccchHHHhcCCCCCC-------CHHHHHHHHHHHHHcCCee-cceeEEecC-----CCHHHHHHHHHHHHcCCCCEE
Confidence 865553 55553 3 2233344444443332211 123455533 345777888888888998854
No 462
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=82.15 E-value=34 Score=34.43 Aligned_cols=188 Identities=17% Similarity=0.174 Sum_probs=0.0
Q ss_pred hccCCCCCCCCHHHHHHHHHHHHhh----cCCcEEEeCCCCCCCH-HHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCC
Q 012478 124 RLALPDTGFISYGEMVDQGQLITQA----VSIPVIGDGDNGYGNA-MNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRG 198 (462)
Q Consensus 124 ~lG~PD~g~vsl~Eml~~~~~I~ra----~~iPVIaD~DtGyG~~-~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~g 198 (462)
.+|++. ..++..+++.+.+.+. .++|||+-.-.-..+. ....+.++++. +||+++-|.=. |-|..+
T Consensus 69 ~~G~~n---~g~~~~~~~~~~~~~~~~~~~~~pvi~Si~~~~~~~~~d~~~~a~~~~-~~ad~lElN~S-----cPn~~~ 139 (295)
T PF01180_consen 69 SMGLPN---PGLEYYLERLRPILKEAKKDVDIPVIASINGDSEEEIEDWAELAKRLE-AGADALELNLS-----CPNVPG 139 (295)
T ss_dssp ---S-B---SHHHHHHHHHHHTHHHTTCH-CEEEEEEE-TSSSGHHHHHHHHHHHHH-HHCSEEEEEST-----STTSTT
T ss_pred ccCCCh---HHHHHHHHHHHHHhhhcccccceeEEEEeecCCchhHHHHHHHHHHhc-CcCCceEEEee-----ccCCCC
Q ss_pred Cc-ccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEE----ecCCC----------
Q 012478 199 RK-VVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLF----IDALA---------- 263 (462)
Q Consensus 199 k~-Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~If----ie~~~---------- 263 (462)
.+ +-..++....|..++....+ .+++|-=--+... .+....+....+.|+|+|. +....
T Consensus 140 ~~~~~~~~~~~~~i~~~v~~~~~--~Pv~vKL~p~~~~----~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~ 213 (295)
T PF01180_consen 140 GRPFGQDPELVAEIVRAVREAVD--IPVFVKLSPNFTD----IEPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPV 213 (295)
T ss_dssp SGGGGGHHHHHHHHHHHHHHHHS--SEEEEEE-STSSC----HHHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEES
T ss_pred ccccccCHHHHHHHHHHHHhccC--CCEEEEecCCCCc----hHHHHHHHHhhccceeEEEEecCccCcccccchhccee
Q ss_pred ----------------CHHHHHHHHHhCC-CCceeeeeeecCCCCCCCCHHHHHhcCCCEEeccchHHHHHHHHHHHHHH
Q 012478 264 ----------------SKEEMKAFCEISP-LVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIGVSVRAMQDALT 326 (462)
Q Consensus 264 ----------------s~eei~~i~~~v~-~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~ll~aa~~Am~~~l~ 326 (462)
....+.++.+.++ .+|+... ||-.-.-+..|+-.+|.+.|-....++..-...+++..+
T Consensus 214 ~~~~~gGlSG~~i~p~aL~~V~~~~~~~~~~i~Iig~----GGI~s~~da~e~l~aGA~~Vqv~Sal~~~Gp~~~~~i~~ 289 (295)
T PF01180_consen 214 LGNGFGGLSGPAIRPIALRWVRELRKALGQDIPIIGV----GGIHSGEDAIEFLMAGASAVQVCSALIYRGPGVIRRINR 289 (295)
T ss_dssp SSGGEEEEEEGGGHHHHHHHHHHHHHHTTTSSEEEEE----SS--SHHHHHHHHHHTESEEEESHHHHHHGTTHHHHHHH
T ss_pred eccccCCcCchhhhhHHHHHHHHHHhccccceEEEEe----CCcCCHHHHHHHHHhCCCHheechhhhhcCcHHHHHHHH
Q ss_pred HHHc
Q 012478 327 AIKG 330 (462)
Q Consensus 327 ~l~~ 330 (462)
.|++
T Consensus 290 ~L~~ 293 (295)
T PF01180_consen 290 ELEE 293 (295)
T ss_dssp HHHH
T ss_pred HHHh
No 463
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=81.98 E-value=3.9 Score=40.72 Aligned_cols=197 Identities=22% Similarity=0.228 Sum_probs=105.8
Q ss_pred HHHHHHHhCCCceEecccCChHHHHHHHHhCCcEEEecc---HHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEE
Q 012478 79 KSLRQILELPGVHQGPACFDALSAKLVEKSGFSFCFTSG---FSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIG 155 (462)
Q Consensus 79 ~~LR~ll~~~~~iv~p~ayDalSArl~e~aGfdaI~vSG---~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIa 155 (462)
.-|-++|+.+ ++..+-.+-.|+++|++|.=++...- .-+-+ .-|. -.++-. ..++.|.+++++||++
T Consensus 14 ~GLAQmLkGG---vImdVv~~eQA~iAE~aGACaVmalervPadiR~-~GgV---~RMsDP---~mIKei~~aVsiPVMA 83 (296)
T KOG1606|consen 14 VGLAQMLKGG---VIMDVVNAEQARIAEEAGACAVMALERVPADIRA-QGGV---ARMSDP---RMIKEIKNAVSIPVMA 83 (296)
T ss_pred HHHHHHhcCC---eEEEecCHHHHHHHHhcCcceEeeeccCCHhHHh-cCCe---eecCCH---HHHHHHHHhccchhhh
Confidence 3588888755 45577788999999999987777652 11211 1111 112222 3467888999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhCccEE-------------EeCCCCC--CCCCCCCCCCcccCHHHHHHHHHHHHHHHHh
Q 012478 156 DGDNGYGNAMNVKRTVKGYIKAGFAGI-------------ILEDQVS--PKGCGHTRGRKVVSREEAVMRIKAAVDARKE 220 (462)
Q Consensus 156 D~DtGyG~~~nv~rtVk~l~~AGaaGI-------------~IEDq~~--PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~ 220 (462)
-.--|.--.. +-++..|++=| |||-.-| |=.||-. +..|+..||+.-.
T Consensus 84 k~RiGHFVEA------QIlE~l~vDYiDESEvlt~AD~~hhI~KhnFkvPFvCG~r------dlGEALRRI~EGA----- 146 (296)
T KOG1606|consen 84 KVRIGHFVEA------QILEALGVDYIDESEVLTPADWDHHIEKHNFKVPFVCGCR------DLGEALRRIREGA----- 146 (296)
T ss_pred hhhhhhhhHH------HHHHHhccCccchhhhcccccccchhhhhcCcCceeeccc------cHHHHHHHHhhch-----
Confidence 9888843222 23444555543 2332221 4567643 3567777775321
Q ss_pred hCCCeEEEEecchhhc-ccHHHHHHHHHHhHhcCCcEEEecCCCCHHHHHHHHHhC-------------CCCceeeeeee
Q 012478 221 SGSDIVIVARTDSRQA-LSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEIS-------------PLVPKMANMLE 286 (462)
Q Consensus 221 ~g~d~vIiARTDA~~~-~gldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v-------------~~vP~~~N~l~ 286 (462)
- +-||...+. .++.|+++-.+..... .=.+.. .+.+|+..+++++ ..+|+ +|.-.
T Consensus 147 ----A--MIRtkGeagTG~v~EaVkhvr~i~ge---ir~~~~-m~~dev~t~Ak~i~aP~dLv~~t~q~GrlPV-V~FAa 215 (296)
T KOG1606|consen 147 ----A--MIRTKGEAGTGDVSEAVKHVRSINGE---IRVLKN-MDDDEVFTFAKEIAAPYDLVKQTKQLGRLPV-VNFAA 215 (296)
T ss_pred ----h--hheeccccCCCcHHHHHHHHHHHHHH---HHHHHc-CCHHHHHHHHHHhcCcHHHHHHHHHcCCCce-EEecc
Confidence 1 224444332 2344444433222110 000011 2445666655543 22343 56555
Q ss_pred cCCCCCCCCHHHHHhcCCCEEeccchHH
Q 012478 287 GGGKTPILNPLELEELGFKLVAYPLSLI 314 (462)
Q Consensus 287 ~~g~tP~ls~~eL~~lGv~~V~yp~~ll 314 (462)
+|-.|| -+..=+.+||..-|..+...+
T Consensus 216 GGvaTP-ADAALmMQLGCdGVFVGSgiF 242 (296)
T KOG1606|consen 216 GGVATP-ADAALMMQLGCDGVFVGSGIF 242 (296)
T ss_pred cCcCCh-hHHHHHHHcCCCeEEeccccc
Confidence 533444 345668899999999887755
No 464
>PRK09389 (R)-citramalate synthase; Provisional
Probab=81.93 E-value=20 Score=39.24 Aligned_cols=131 Identities=17% Similarity=0.119 Sum_probs=80.8
Q ss_pred HHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHh---hcCCcEEEeCCCCCC-CHHHHHHHHHHHHHhCc
Q 012478 104 LVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQ---AVSIPVIGDGDNGYG-NAMNVKRTVKGYIKAGF 179 (462)
Q Consensus 104 l~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~r---a~~iPVIaD~DtGyG-~~~nv~rtVk~l~~AGa 179 (462)
.+-++|.+.|.+.. .+|-.. .-..-..+.+|.++.+....+ ..+.-|.+++++++- ++.-+.+.++.+.++|+
T Consensus 81 ~a~~~g~~~v~i~~-~~Sd~h--~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga 157 (488)
T PRK09389 81 AALECDVDSVHLVV-PTSDLH--IEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEAGA 157 (488)
T ss_pred HHHhCCcCEEEEEE-ccCHHH--HHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhCCC
Confidence 44457888766652 111000 001123578888877665543 346778889998765 56788899999999999
Q ss_pred cEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEE
Q 012478 180 AGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVL 257 (462)
Q Consensus 180 aGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~I 257 (462)
.-|+|-|.+ | ...++++.+.++.+++.. +..+=+-...| +.-|+.-+.+..+|||+.|
T Consensus 158 ~~i~l~DTv-----G------~~~P~~~~~lv~~l~~~~---~v~l~~H~HND------~GlAvANalaAv~aGa~~V 215 (488)
T PRK09389 158 DRICFCDTV-----G------ILTPEKTYELFKRLSELV---KGPVSIHCHND------FGLAVANTLAALAAGADQV 215 (488)
T ss_pred CEEEEecCC-----C------CcCHHHHHHHHHHHHhhc---CCeEEEEecCC------ccHHHHHHHHHHHcCCCEE
Confidence 999999986 3 334566666666665431 22233333333 2345666777778888754
No 465
>PLN02591 tryptophan synthase
Probab=81.93 E-value=39 Score=33.96 Aligned_cols=174 Identities=17% Similarity=0.210 Sum_probs=87.4
Q ss_pred CCCCCCHHHHHHHHHHHHHhCccEEEeCCCC-C--CCCCCCCCCCcc-----------cCHHHHHHHHHHHHHHHHhhCC
Q 012478 158 DNGYGNAMNVKRTVKGYIKAGFAGIILEDQV-S--PKGCGHTRGRKV-----------VSREEAVMRIKAAVDARKESGS 223 (462)
Q Consensus 158 DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~-~--PKrCGH~~gk~L-----------vp~ee~~~kI~AA~~Ar~~~g~ 223 (462)
-.||-+.+...+.++.++++||+.|-| +. + |. .+|..+ +..+...+-++.. |++...
T Consensus 9 ~aG~P~~e~~~~~~~~l~~~Gad~iEl--GiPfSDP~----aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~---r~~~~~ 79 (250)
T PLN02591 9 TAGDPDLDTTAEALRLLDACGADVIEL--GVPYSDPL----ADGPVIQAAATRALEKGTTLDSVISMLKEV---APQLSC 79 (250)
T ss_pred eCCCCCHHHHHHHHHHHHHCCCCEEEE--CCCCCCCc----ccCHHHHHHHHHHHHcCCCHHHHHHHHHHH---hcCCCC
Confidence 357778788888899999999998866 32 1 21 112111 1122222333222 222223
Q ss_pred CeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEecCCCCHHHHHHH---HHhCCCCceeeeeeecCCCCCCCCH---H
Q 012478 224 DIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAF---CEISPLVPKMANMLEGGGKTPILNP---L 297 (462)
Q Consensus 224 d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i---~~~v~~vP~~~N~l~~~g~tP~ls~---~ 297 (462)
+++++.=..-.-..|+|.-+++| .++|+|.+.++-++- ||...+ ++... +.. +-++ +|..+. +
T Consensus 80 p~ilm~Y~N~i~~~G~~~F~~~~---~~aGv~GviipDLP~-ee~~~~~~~~~~~g-l~~-I~lv-----~Ptt~~~ri~ 148 (250)
T PLN02591 80 PIVLFTYYNPILKRGIDKFMATI---KEAGVHGLVVPDLPL-EETEALRAEAAKNG-IEL-VLLT-----TPTTPTERMK 148 (250)
T ss_pred CEEEEecccHHHHhHHHHHHHHH---HHcCCCEEEeCCCCH-HHHHHHHHHHHHcC-CeE-EEEe-----CCCCCHHHHH
Confidence 45555544433455777766655 489999999998874 444444 44443 221 1122 233343 3
Q ss_pred HHHhc--CCCE-Ee-ccchHHHHH-HHHHHHHHHHHHcC-CCCC-CC-CCCCHHHHHHhcCc
Q 012478 298 ELEEL--GFKL-VA-YPLSLIGVS-VRAMQDALTAIKGG-RIPS-PG-SMPSFQEIKETLGF 351 (462)
Q Consensus 298 eL~~l--Gv~~-V~-yp~~ll~aa-~~Am~~~l~~l~~g-~~~~-~~-~~~s~~e~~~lvg~ 351 (462)
.+.+. ||=- |+ .|.+..+.. -..+.+.++.+|+- ..+. .+ ..-+-+++.++..+
T Consensus 149 ~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~~Pv~vGFGI~~~e~v~~~~~~ 210 (250)
T PLN02591 149 AIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVTDKPVAVGFGISKPEHAKQIAGW 210 (250)
T ss_pred HHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCCCceEEeCCCCCHHHHHHHHhc
Confidence 33333 3322 22 344433322 34456667777762 2222 12 22235666665554
No 466
>TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III. Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis.
Probab=81.87 E-value=45 Score=36.04 Aligned_cols=118 Identities=16% Similarity=0.199 Sum_probs=74.9
Q ss_pred HHHHHhhcCCcEEEeCCCC-CC-CHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHH-HHH
Q 012478 142 GQLITQAVSIPVIGDGDNG-YG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAV-DAR 218 (462)
Q Consensus 142 ~~~I~ra~~iPVIaD~DtG-yG-~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~-~Ar 218 (462)
+|++....+-||+.-+=-- -| ++.+..+.+.++...|++=|| .|.. ...++..|.+|-+..+..++ ++.
T Consensus 135 ~R~~lgv~~RPL~gtiiKP~~Glsp~~~a~~~~~~~~GGvD~IK-DDE~-------l~~q~~~p~~eRv~~~~~a~~~a~ 206 (412)
T TIGR03326 135 VREFLGIKDRPLLGTVPKPKVGLSTEEHAKVAYELWSGGVDLLK-DDEN-------LTSQPFNRFEERVEKLYKVRDKVE 206 (412)
T ss_pred HHHHhCCCCCceEEeeccccccCChHHHHHHHHHHHhcCCceee-cCCC-------CCCCCCccHHHHHHHHHHHHHHHH
Confidence 5666667789999887654 35 578888999999999999776 2432 23344556655444443333 223
Q ss_pred HhhCCC--eEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEecCCCC-HHHHHHHHH
Q 012478 219 KESGSD--IVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALAS-KEEMKAFCE 273 (462)
Q Consensus 219 ~~~g~d--~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~~~s-~eei~~i~~ 273 (462)
++.|.. +.++- |+ +.+|.++|++...++|+.++++.-... ..-++.+.+
T Consensus 207 ~eTG~~~~ya~Ni-T~-----~~~em~~ra~~~~~~G~~~~mv~~~~~G~~~l~~l~~ 258 (412)
T TIGR03326 207 AETGERKEYLANI-TA-----PVREMERRAELVADLGGQYVMVDVVVCGWSALQYIRE 258 (412)
T ss_pred HHhCCcceEEEEe-cC-----CHHHHHHHHHHHHHhCCCeEEEEeeccchHHHHHHHH
Confidence 344432 22221 22 358999999999999999999865432 344555554
No 467
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=81.83 E-value=48 Score=34.67 Aligned_cols=36 Identities=22% Similarity=0.295 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhHhcCCcEEEecCCCCHHHHHHHHHhC
Q 012478 239 LEESLRRSRAFADAGADVLFIDALASKEEMKAFCEIS 275 (462)
Q Consensus 239 ldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v 275 (462)
+-|++. |..|.-+|||++++.++.+...++++.+.+
T Consensus 277 ~~E~~~-a~~~~~~ga~i~vm~hp~s~~~~~~~~~~l 312 (319)
T PRK04452 277 LWEAVT-ALTLLLAGADIFMMRHPESVKTLKEIIDTL 312 (319)
T ss_pred HHHHHH-HHHHHHhcCcEEEEeCHHHHHHHHHHHHHH
Confidence 345554 888999999999999999888888888764
No 468
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=81.80 E-value=27 Score=34.70 Aligned_cols=145 Identities=14% Similarity=0.018 Sum_probs=86.6
Q ss_pred HHHHHHHHhCCC-ceEe-cccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhh---cCCc
Q 012478 78 AKSLRQILELPG-VHQG-PACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQA---VSIP 152 (462)
Q Consensus 78 a~~LR~ll~~~~-~iv~-p~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra---~~iP 152 (462)
...++++.+... ++.+ -|+.+.-.++.+..+|++.+-+++... +|. ++ ++.+.+. ..++
T Consensus 63 ~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~~~-------~~~------~~---~~~~~~~~~~~~i~ 126 (258)
T PRK01033 63 YELIENLASECFMPLCYGGGIKTLEQAKKIFSLGVEKVSINTAAL-------EDP------DL---ITEAAERFGSQSVV 126 (258)
T ss_pred HHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHCCCCEEEEChHHh-------cCH------HH---HHHHHHHhCCCcEE
Confidence 345666655432 3333 378888888777788999998885332 221 22 2233332 2378
Q ss_pred EEEeCCCCC-------------CCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHH
Q 012478 153 VIGDGDNGY-------------GNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARK 219 (462)
Q Consensus 153 VIaD~DtGy-------------G~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~ 219 (462)
+.+|.-.|. .......+.++++.+.|+..+.+-|=. +.|...|. +. +++.++ +++
T Consensus 127 vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~~i~---~~G~~~G~---d~-~~i~~~---~~~-- 194 (258)
T PRK01033 127 VSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEALGAGEILLNSID---RDGTMKGY---DL-ELLKSF---RNA-- 194 (258)
T ss_pred EEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHcCCCEEEEEccC---CCCCcCCC---CH-HHHHHH---Hhh--
Confidence 888987661 112346777899999999999998653 45555553 22 333343 222
Q ss_pred hhCCCeEEEEecchhhcccHHHHHHHHHHhH-hcCCcEEEec
Q 012478 220 ESGSDIVIVARTDSRQALSLEESLRRSRAFA-DAGADVLFID 260 (462)
Q Consensus 220 ~~g~d~vIiARTDA~~~~gldeAI~RakAy~-eAGAD~Ifie 260 (462)
.++-|+|--+....+ ....+. +.|||.+.+-
T Consensus 195 ---~~ipvIasGGv~s~e-------D~~~l~~~~GvdgVivg 226 (258)
T PRK01033 195 ---LKIPLIALGGAGSLD-------DIVEAILNLGADAAAAG 226 (258)
T ss_pred ---CCCCEEEeCCCCCHH-------HHHHHHHHCCCCEEEEc
Confidence 356677776665432 333333 5799998864
No 469
>PRK06256 biotin synthase; Validated
Probab=81.73 E-value=47 Score=33.89 Aligned_cols=155 Identities=13% Similarity=0.144 Sum_probs=93.2
Q ss_pred EecccCChHHHHHHHHhCCcEEEeccHHHHhhhccCCCC-CCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCC-HHHHHH
Q 012478 92 QGPACFDALSAKLVEKSGFSFCFTSGFSISAARLALPDT-GFISYGEMVDQGQLITQAVSIPVIGDGDNGYGN-AMNVKR 169 (462)
Q Consensus 92 v~p~ayDalSArl~e~aGfdaI~vSG~avSas~lG~PD~-g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~-~~nv~r 169 (462)
.-.|.-+.-.++.+.++|++.+.++ +-.+-..+ +-. ..-++++.++.++.+.+ .++++...+=.|.|. ..++.+
T Consensus 145 ~~~g~l~~e~l~~LkeaG~~~v~~~-lEts~~~~--~~i~~~~t~~~~i~~i~~a~~-~Gi~v~~~~I~GlgEt~ed~~~ 220 (336)
T PRK06256 145 ACLGLLTEEQAERLKEAGVDRYNHN-LETSRSYF--PNVVTTHTYEDRIDTCEMVKA-AGIEPCSGGIIGMGESLEDRVE 220 (336)
T ss_pred ecCCcCCHHHHHHHHHhCCCEEecC-CccCHHHH--hhcCCCCCHHHHHHHHHHHHH-cCCeeccCeEEeCCCCHHHHHH
Confidence 3346677778888889999998875 11111121 111 12478888888887654 567777776667774 578889
Q ss_pred HHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHh
Q 012478 170 TVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAF 249 (462)
Q Consensus 170 tVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy 249 (462)
+++.+.+.|+..|.+--- .|..-..+.+.+.++.+|++..|..++-.-.+ ..+.+-++-... +.+ . ....+
T Consensus 221 ~~~~l~~l~~~~v~i~~l-~P~pGT~l~~~~~~~~~e~l~~ia~~Rl~~p~--~~I~~~~gr~~~----~~~-~-~~~~~ 291 (336)
T PRK06256 221 HAFFLKELDADSIPINFL-NPIPGTPLENHPELTPLECLKTIAIFRLINPD--KEIRIAGGREVN----LRS-L-QPLGL 291 (336)
T ss_pred HHHHHHhCCCCEEeeccc-ccCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC--CeeEecCchhhh----chh-h-HHHHh
Confidence 998888999988877422 23211123344567888888887766655421 122222221111 111 0 13344
Q ss_pred HhcCCcEEEecC
Q 012478 250 ADAGADVLFIDA 261 (462)
Q Consensus 250 ~eAGAD~Ifie~ 261 (462)
+||+.+|+..
T Consensus 292 --~g~~~~~~g~ 301 (336)
T PRK06256 292 --GGANSVIVGN 301 (336)
T ss_pred --ccCceeeECC
Confidence 6999999864
No 470
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=81.73 E-value=27 Score=36.68 Aligned_cols=143 Identities=13% Similarity=0.105 Sum_probs=77.0
Q ss_pred HHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEE--Eecc--h------hhc
Q 012478 167 VKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIV--ARTD--S------RQA 236 (462)
Q Consensus 167 v~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIi--ARTD--A------~~~ 236 (462)
....++++.+.||++|++==-..| +..+-+ .+++.+.|+.+.+.++..|-.|++- -... . ++.
T Consensus 108 ~~~sve~a~~~GAdAVk~lv~~~~------d~~~~~-~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a~ 180 (340)
T PRK12858 108 DNWSVRRIKEAGADAVKLLLYYRP------DEDDAI-NDRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFAK 180 (340)
T ss_pred ccccHHHHHHcCCCEEEEEEEeCC------CcchHH-HHHHHHHHHHHHHHHHHcCCceEEEEeccCCCccccccccccc
Confidence 444588899999999998322111 100000 2356667777777777767777662 1111 1 111
Q ss_pred ccHHHHHHHHHHhH--hcCCcEEEecCCCC---------------H----HHHHHHHHhCCCCceeeeeeecCCCCCCC-
Q 012478 237 LSLEESLRRSRAFA--DAGADVLFIDALAS---------------K----EEMKAFCEISPLVPKMANMLEGGGKTPIL- 294 (462)
Q Consensus 237 ~gldeAI~RakAy~--eAGAD~Ifie~~~s---------------~----eei~~i~~~v~~vP~~~N~l~~~g~tP~l- 294 (462)
..-+-.+.-++.+. +.|||++=++-+.+ . +.++++++..+ +|+-++.+ |++...
T Consensus 181 ~~p~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~---~P~vvlsg-G~~~~~f 256 (340)
T PRK12858 181 VKPEKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATD---LPFIFLSA-GVSPELF 256 (340)
T ss_pred cCHHHHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhCC---CCEEEECC-CCCHHHH
Confidence 22233444466666 49999998876533 2 34555555543 34435543 543221
Q ss_pred --CHHHHHhcCC--CEEeccchHHHHHHHH
Q 012478 295 --NPLELEELGF--KLVAYPLSLIGVSVRA 320 (462)
Q Consensus 295 --s~~eL~~lGv--~~V~yp~~ll~aa~~A 320 (462)
.++...+.|. +=|++|-..+..++..
T Consensus 257 ~~~l~~A~~aGa~f~Gvl~GRniwq~~v~~ 286 (340)
T PRK12858 257 RRTLEFACEAGADFSGVLCGRATWQDGIEP 286 (340)
T ss_pred HHHHHHHHHcCCCccchhhhHHHHhhhhcc
Confidence 1233345565 7777776666555544
No 471
>PRK02901 O-succinylbenzoate synthase; Provisional
Probab=81.61 E-value=23 Score=36.78 Aligned_cols=139 Identities=22% Similarity=0.318 Sum_probs=84.7
Q ss_pred CCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEE
Q 012478 150 SIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVA 229 (462)
Q Consensus 150 ~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiA 229 (462)
.+|+.+-.. .+.+..+.+.++++ .|...+||-= |..+ .+.++-+++|++++++. |+++.|
T Consensus 78 ~vp~~~tv~--~~~~e~~~~~~~~~--~G~~~~KvKV-------g~~~----~~~~~Di~rv~avRe~l---Gpd~~L-- 137 (327)
T PRK02901 78 RVPVNATVP--AVDAAQVPEVLARF--PGCRTAKVKV-------AEPG----QTLADDVARVNAVRDAL---GPDGRV-- 137 (327)
T ss_pred eEEeeEEeC--CCCHHHHHHHHHHh--CCCCEEEEEE-------CCCC----CCHHHHHHHHHHHHHhc---CCCCEE--
Confidence 356665433 33566666555554 5999999842 2111 13456678888887764 566544
Q ss_pred ecchhhcccHHHHHHHHHHh-HhcCCcEEEecCC-CCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhc-CCCE
Q 012478 230 RTDSRQALSLEESLRRSRAF-ADAGADVLFIDAL-ASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEEL-GFKL 306 (462)
Q Consensus 230 RTDA~~~~gldeAI~RakAy-~eAGAD~Ifie~~-~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~l-Gv~~ 306 (462)
|.|+-...+.++|++.++++ .+. +.-|+|-+ ++.++++++.+.++ +|+.+. |. -.+ .....++.+. +++.
T Consensus 138 rvDAN~~ws~~~Ai~~~~~L~e~~--~l~~iEqP~~~~~~la~Lr~~~~-vPIA~D--Es-~~~-~~d~~~l~~~~a~dv 210 (327)
T PRK02901 138 RVDANGGWSVDEAVAAARALDADG--PLEYVEQPCATVEELAELRRRVG-VPIAAD--ES-IRR-AEDPLRVARAGAADV 210 (327)
T ss_pred EEECCCCCCHHHHHHHHHHhhhcc--CceEEecCCCCHHHHHHHHHhCC-CCEEeC--CC-CCC-HHHHHHHHHcCCCCE
Confidence 66887778899999999999 443 66788754 56889999998875 665432 11 001 1133444444 4666
Q ss_pred EeccchHHH
Q 012478 307 VAYPLSLIG 315 (462)
Q Consensus 307 V~yp~~ll~ 315 (462)
+..=.+.++
T Consensus 211 i~ik~~~~G 219 (327)
T PRK02901 211 AVLKVAPLG 219 (327)
T ss_pred EEeCcchhC
Confidence 655444433
No 472
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=81.60 E-value=13 Score=46.37 Aligned_cols=103 Identities=21% Similarity=0.400 Sum_probs=75.0
Q ss_pred CCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccH
Q 012478 160 GYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSL 239 (462)
Q Consensus 160 GyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gl 239 (462)
+++++..+.+.++.+.+.|...+||-= |+. .+.++-+++|++++++. |+++.| |-|+-.....
T Consensus 1087 ~~~~~~~~~~~a~~~~~~Gf~~~KlKv-------G~~-----~~~~~D~~~i~alRe~~---G~~~~L--rlDAN~~ws~ 1149 (1655)
T PLN02980 1087 SNGSPLEVAYVARKLVEEGFSAIKLKV-------GRR-----VSPIQDAAVIQEVRKAV---GYQIEL--RADANRNWTY 1149 (1655)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEec-------CCC-----CCHHHHHHHHHHHHHHc---CCCCeE--EEECCCCCCH
Confidence 345677788888888899999999932 321 12355678888887664 556544 7788888889
Q ss_pred HHHHHHHHHhHhcCCcEEEecCC-CCHHHHHHHHHhCCCCceee
Q 012478 240 EESLRRSRAFADAGADVLFIDAL-ASKEEMKAFCEISPLVPKMA 282 (462)
Q Consensus 240 deAI~RakAy~eAGAD~Ifie~~-~s~eei~~i~~~v~~vP~~~ 282 (462)
++|++.++++.+.+ .-|+|-+ ++.+++.++++..+ +|+.+
T Consensus 1150 ~~A~~~~~~L~~~~--i~~iEqPl~~~~~l~~l~~~~~-iPIA~ 1190 (1655)
T PLN02980 1150 EEAIEFGSLVKSCN--LKYIEEPVQDEDDLIKFCEETG-LPVAL 1190 (1655)
T ss_pred HHHHHHHHHHhhcC--CCEEECCCCCHHHHHHHHHhCC-CCEEe
Confidence 99999999998865 5588764 46788999988765 56543
No 473
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=81.59 E-value=11 Score=38.46 Aligned_cols=62 Identities=23% Similarity=0.423 Sum_probs=44.0
Q ss_pred HHHHhHhcCCcEEEecCCCCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcCCCEEeccc
Q 012478 245 RSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPL 311 (462)
Q Consensus 245 RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~ 311 (462)
.++.+.++|||.|.++. -+.++++++++.++ .|.++- .-||-++ -+..++.+.|+..++.+.
T Consensus 200 ea~~A~~~gaDyI~lD~-~~~e~l~~~~~~~~-~~i~i~--AiGGIt~-~ni~~~a~~Gvd~IAvg~ 261 (277)
T PRK08072 200 QVREAVAAGADIIMFDN-RTPDEIREFVKLVP-SAIVTE--ASGGITL-ENLPAYGGTGVDYISLGF 261 (277)
T ss_pred HHHHHHHcCCCEEEECC-CCHHHHHHHHHhcC-CCceEE--EECCCCH-HHHHHHHHcCCCEEEECh
Confidence 34555689999999975 46789999998765 244432 2334433 367899999999998865
No 474
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=81.51 E-value=47 Score=32.52 Aligned_cols=130 Identities=18% Similarity=0.241 Sum_probs=78.3
Q ss_pred HHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhC
Q 012478 143 QLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESG 222 (462)
Q Consensus 143 ~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g 222 (462)
..+.+.-=+||+-. -+..++.+.++.+.+.|+..|-|-=.. .+..+-|+.+++. .
T Consensus 10 ~~l~~~~~iaV~r~-----~~~~~a~~i~~al~~~Gi~~iEitl~~----------------~~~~~~I~~l~~~---~- 64 (212)
T PRK05718 10 EILRAGPVVPVIVI-----NKLEDAVPLAKALVAGGLPVLEVTLRT----------------PAALEAIRLIAKE---V- 64 (212)
T ss_pred HHHHHCCEEEEEEc-----CCHHHHHHHHHHHHHcCCCEEEEecCC----------------ccHHHHHHHHHHH---C-
Confidence 34433333677653 246788999999999999988774221 1223344444332 2
Q ss_pred CCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEecCCCCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhc
Q 012478 223 SDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEEL 302 (462)
Q Consensus 223 ~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~l 302 (462)
++.+|-|=|=-. .+.++.+.+|||+-++.++... ++-+.|.+.. +|.+ ++ -.||. ...+..++
T Consensus 65 p~~~IGAGTVl~--------~~~a~~a~~aGA~FivsP~~~~--~vi~~a~~~~-i~~i----PG-~~Tpt-Ei~~a~~~ 127 (212)
T PRK05718 65 PEALIGAGTVLN--------PEQLAQAIEAGAQFIVSPGLTP--PLLKAAQEGP-IPLI----PG-VSTPS-ELMLGMEL 127 (212)
T ss_pred CCCEEEEeeccC--------HHHHHHHHHcCCCEEECCCCCH--HHHHHHHHcC-CCEe----CC-CCCHH-HHHHHHHC
Confidence 566666655321 1468889999999999998764 5555565543 4433 11 12331 14557789
Q ss_pred CCCEEec-cchHH
Q 012478 303 GFKLVAY-PLSLI 314 (462)
Q Consensus 303 Gv~~V~y-p~~ll 314 (462)
|++.|-+ |...+
T Consensus 128 Ga~~vKlFPa~~~ 140 (212)
T PRK05718 128 GLRTFKFFPAEAS 140 (212)
T ss_pred CCCEEEEccchhc
Confidence 9988755 54433
No 475
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=81.48 E-value=5.3 Score=40.86 Aligned_cols=133 Identities=17% Similarity=0.152 Sum_probs=81.8
Q ss_pred HHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHh
Q 012478 172 KGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFAD 251 (462)
Q Consensus 172 k~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~e 251 (462)
+.++++|..++-+-.-..--.+|-.+. .+++.+|++++++.+..+. +.-|++=-|.-... .....+-.+.|++
T Consensus 27 ri~e~aGf~Ai~~sg~~~a~~lG~pD~-g~lt~~e~~~~~~~I~~~~-----~iPviaD~d~GyG~-~~~v~~tv~~~~~ 99 (285)
T TIGR02317 27 LLAERAGFEAIYLSGAAVAASLGLPDL-GITTLDEVAEDARRITRVT-----DLPLLVDADTGFGE-AFNVARTVREMED 99 (285)
T ss_pred HHHHHcCCCEEEEcHHHHHHhCCCCCC-CCCCHHHHHHHHHHHHhcc-----CCCEEEECCCCCCC-HHHHHHHHHHHHH
Confidence 567789999999866432224565442 3789999999998887663 45566655553222 5667777999999
Q ss_pred cCCcEEEecC--------------CCCH-HHHHHHH---HhCCCCceeeeeeecCCCCCCCC-----HHHHHhcCCCEEe
Q 012478 252 AGADVLFIDA--------------LASK-EEMKAFC---EISPLVPKMANMLEGGGKTPILN-----PLELEELGFKLVA 308 (462)
Q Consensus 252 AGAD~Ifie~--------------~~s~-eei~~i~---~~v~~vP~~~N~l~~~g~tP~ls-----~~eL~~lGv~~V~ 308 (462)
|||.+|.||- +-+. +.+.+|. +.....+.++|.--..-....+. ..-+.++|...|.
T Consensus 100 aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~ay~~AGAD~vf 179 (285)
T TIGR02317 100 AGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAIERAKAYVEAGADMIF 179 (285)
T ss_pred cCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHHHHHHHHHHHHHcCCCEEE
Confidence 9999999974 1132 3333433 22233456776442100000111 2456788999888
Q ss_pred ccc
Q 012478 309 YPL 311 (462)
Q Consensus 309 yp~ 311 (462)
.+.
T Consensus 180 i~g 182 (285)
T TIGR02317 180 PEA 182 (285)
T ss_pred eCC
Confidence 865
No 476
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=81.43 E-value=62 Score=34.29 Aligned_cols=145 Identities=16% Similarity=0.061 Sum_probs=80.7
Q ss_pred CCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHHhC--ccEEEeCCCCCCCCCCCCCCCcccCHHHHHH
Q 012478 132 FISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAG--FAGIILEDQVSPKGCGHTRGRKVVSREEAVM 209 (462)
Q Consensus 132 ~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~AG--aaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~ 209 (462)
.++.++....++.+......-+.+ .-|-..+-.+-++.+.++| ++.|.| |-. .||.. -+++
T Consensus 77 ~~~~e~~~~~v~~~~~~~~~~~~v----svG~~~~d~er~~~L~~a~~~~d~ivi-D~A----hGhs~--------~~i~ 139 (343)
T TIGR01305 77 HYSVDEWKAFATNSSPDCLQNVAV----SSGSSDNDLEKMTSILEAVPQLKFICL-DVA----NGYSE--------HFVE 139 (343)
T ss_pred CCCHHHHHHHHHhhcccccceEEE----EeccCHHHHHHHHHHHhcCCCCCEEEE-ECC----CCcHH--------HHHH
Confidence 477888777777655443333444 1232334456667788875 999999 654 46753 3444
Q ss_pred HHHHHHHHHHhhCCCeEEEEe-cchhhcccHHHHHHHHHHhHhcCCcEEEec------C---------CCCHHHHHHHHH
Q 012478 210 RIKAAVDARKESGSDIVIVAR-TDSRQALSLEESLRRSRAFADAGADVLFID------A---------LASKEEMKAFCE 273 (462)
Q Consensus 210 kI~AA~~Ar~~~g~d~vIiAR-TDA~~~~gldeAI~RakAy~eAGAD~Ifie------~---------~~s~eei~~i~~ 273 (462)
.|+.+++.- ++..|++= .-. -+.++.+.+||||+|.+- | .+....+..+++
T Consensus 140 ~ik~ir~~~----p~~~viaGNV~T---------~e~a~~Li~aGAD~ikVgiGpGSicttR~~~Gvg~pqltAv~~~a~ 206 (343)
T TIGR01305 140 FVKLVREAF----PEHTIMAGNVVT---------GEMVEELILSGADIVKVGIGPGSVCTTRTKTGVGYPQLSAVIECAD 206 (343)
T ss_pred HHHHHHhhC----CCCeEEEecccC---------HHHHHHHHHcCCCEEEEcccCCCcccCceeCCCCcCHHHHHHHHHH
Confidence 454444432 44555443 322 235778889999999864 1 134455555555
Q ss_pred hCC--CCceeeeeeecCCCCCCCCHHHHHhcCCCEEecc
Q 012478 274 ISP--LVPKMANMLEGGGKTPILNPLELEELGFKLVAYP 310 (462)
Q Consensus 274 ~v~--~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp 310 (462)
... .+|++ ..+|-.-.-+.----.+|...|..+
T Consensus 207 aa~~~~v~VI----aDGGIr~~gDI~KALA~GAd~VMlG 241 (343)
T TIGR01305 207 AAHGLKGHII----SDGGCTCPGDVAKAFGAGADFVMLG 241 (343)
T ss_pred HhccCCCeEE----EcCCcCchhHHHHHHHcCCCEEEEC
Confidence 443 24443 3334221123333334788888887
No 477
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=81.33 E-value=25 Score=34.82 Aligned_cols=123 Identities=11% Similarity=0.017 Sum_probs=70.8
Q ss_pred HHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHH---HhhcCCcEEEeCC-----CCCCCHHHHHHHHHH
Q 012478 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLI---TQAVSIPVIGDGD-----NGYGNAMNVKRTVKG 173 (462)
Q Consensus 102 Arl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I---~ra~~iPVIaD~D-----tGyG~~~nv~rtVk~ 173 (462)
++.+-+.|++++-+--. .| + .+..|++..++.| ++..++|++++.. .|+-+...+.+.++.
T Consensus 96 v~~al~~Ga~~v~~~~~------~g-~----~~~~~~~~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~ 164 (258)
T TIGR01949 96 VEDAIRMGADAVSIHVN------VG-S----DTEWEQIRDLGMIAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAARL 164 (258)
T ss_pred HHHHHHCCCCEEEEEEe------cC-C----chHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccccccHHHHHHHHHH
Confidence 44445667776655421 11 1 1223454555554 4556899998765 344344566676788
Q ss_pred HHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcC
Q 012478 174 YIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAG 253 (462)
Q Consensus 174 l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAG 253 (462)
..++||+-|+.. ++ . +.+ .++.++... ..++++++=-. ...++++++......++|
T Consensus 165 a~~~GADyikt~---~~------~-----~~~----~l~~~~~~~---~iPVva~GGi~---~~~~~~~~~~i~~~~~aG 220 (258)
T TIGR01949 165 GAELGADIVKTP---YT------G-----DID----SFRDVVKGC---PAPVVVAGGPK---TNSDREFLQMIKDAMEAG 220 (258)
T ss_pred HHHHCCCEEecc---CC------C-----CHH----HHHHHHHhC---CCcEEEecCCC---CCCHHHHHHHHHHHHHcC
Confidence 889999999973 11 1 222 233333221 23454443211 114688899999999999
Q ss_pred CcEEEe
Q 012478 254 ADVLFI 259 (462)
Q Consensus 254 AD~Ifi 259 (462)
|+.+-+
T Consensus 221 a~Gia~ 226 (258)
T TIGR01949 221 AAGVAV 226 (258)
T ss_pred CcEEeh
Confidence 997754
No 478
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=81.27 E-value=2 Score=43.26 Aligned_cols=48 Identities=17% Similarity=0.410 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhHhcCCcEEEecCC-----------CCHHHHHHHHH----hCCCCceeeeeeec
Q 012478 239 LEESLRRSRAFADAGADVLFIDAL-----------ASKEEMKAFCE----ISPLVPKMANMLEG 287 (462)
Q Consensus 239 ldeAI~RakAy~eAGAD~Ifie~~-----------~s~eei~~i~~----~v~~vP~~~N~l~~ 287 (462)
+|.|++.|.+|+++|+|+|++|-. .+..-|..+++ .+. +|+=+|++..
T Consensus 33 id~A~~dA~~leegG~DavivEN~gD~Pf~k~v~~~tvaaMa~iv~~v~r~v~-iPvGvNVLrN 95 (263)
T COG0434 33 IDRAVRDAAALEEGGVDAVIVENYGDAPFLKDVGPETVAAMAVIVREVVREVS-IPVGVNVLRN 95 (263)
T ss_pred HHHHHHHHHHHHhCCCcEEEEeccCCCCCCCCCChHHHHHHHHHHHHHHHhcc-ccceeeeecc
Confidence 567888899999999999999842 12334444443 444 7999999975
No 479
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=81.25 E-value=63 Score=39.43 Aligned_cols=90 Identities=21% Similarity=0.283 Sum_probs=56.5
Q ss_pred HHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhC--CCeEEEEec-chh----hcccHHH
Q 012478 169 RTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESG--SDIVIVART-DSR----QALSLEE 241 (462)
Q Consensus 169 rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g--~d~vIiART-DA~----~~~glde 241 (462)
+.++.++++||+.|-+|=.. +..|+..-+.|++++..+.+ .+++|-.-+ |.. ....+++
T Consensus 152 eq~~~L~~~GvD~iliETi~--------------d~~EakAal~a~~~~~~~~~~~lPv~vS~~~~d~~Gr~~~G~~~~~ 217 (1178)
T TIGR02082 152 EQAKGLLDGGVDLLLIETCF--------------DTLNAKAALFAAETVFEEKGRELPIMISGTIVDTSGRTLSGQTIEA 217 (1178)
T ss_pred HHHHHHHhCCCCEEEEeccC--------------CHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCeeCCCCcHHH
Confidence 34888889999999999753 34566555555555432223 234443122 321 2345666
Q ss_pred HHHHHHHhHhcCCcEEEecCCCCHHHHHHHHHhC
Q 012478 242 SLRRSRAFADAGADVLFIDALASKEEMKAFCEIS 275 (462)
Q Consensus 242 AI~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v 275 (462)
++.-. ..+|+|+|-+-|...++++..+.+.+
T Consensus 218 ~~~~l---~~~~~~avGlNCs~gP~~m~~~l~~l 248 (1178)
T TIGR02082 218 FLTSL---EHAGIDMIGLNCALGPDEMRPHLKHL 248 (1178)
T ss_pred HHHHH---hcCCCCEEEeCCCCCHHHHHHHHHHH
Confidence 66443 46899999999987778887777654
No 480
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=81.25 E-value=7.5 Score=39.89 Aligned_cols=62 Identities=18% Similarity=0.321 Sum_probs=42.7
Q ss_pred HHHHhHhcCCcEEEecCCCCHHHHHHHHHhC----CCCceeeeeeecCCCCCCCCHHHHHhcCCCEEeccch
Q 012478 245 RSRAFADAGADVLFIDALASKEEMKAFCEIS----PLVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLS 312 (462)
Q Consensus 245 RakAy~eAGAD~Ifie~~~s~eei~~i~~~v----~~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~ 312 (462)
.+..+.++|||.|.++.. +.++++++++.+ +.+| +...||-+ .-+..++.+.|++.++.+..
T Consensus 208 ea~eA~~~GaD~I~LDn~-~~e~l~~av~~~~~~~~~i~----leAsGGIt-~~ni~~ya~tGvD~Isvgsl 273 (288)
T PRK07428 208 QVQEALEYGADIIMLDNM-PVDLMQQAVQLIRQQNPRVK----IEASGNIT-LETIRAVAETGVDYISSSAP 273 (288)
T ss_pred HHHHHHHcCCCEEEECCC-CHHHHHHHHHHHHhcCCCeE----EEEECCCC-HHHHHHHHHcCCCEEEEchh
Confidence 455566899999999865 558888888754 2222 22223433 23678999999999998764
No 481
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=81.17 E-value=47 Score=30.89 Aligned_cols=166 Identities=16% Similarity=0.221 Sum_probs=82.7
Q ss_pred HHHHHHhCCcEEEeccHHHHhhhccCCCCCCCCHHHH-HHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHHhCcc
Q 012478 102 AKLVEKSGFSFCFTSGFSISAARLALPDTGFISYGEM-VDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFA 180 (462)
Q Consensus 102 Arl~e~aGfdaI~vSG~avSas~lG~PD~g~vsl~Em-l~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaa 180 (462)
++.+.++|++.+-+. ..|........+ .+.++.|.+.++.|+.++.=. -++ .+-++.+.++|++
T Consensus 18 ~~~~~~~G~~~i~l~----------~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~~--~d~---~~~~~~~~~~g~d 82 (211)
T cd00429 18 LKRLEEAGADWIHID----------VMDGHFVPNLTFGPPVVKALRKHTDLPLDVHLMV--ENP---ERYIEAFAKAGAD 82 (211)
T ss_pred HHHHHHcCCCEEEEe----------cccCCCCCccccCHHHHHHHHhhCCCcEEEEeee--CCH---HHHHHHHHHcCCC
Confidence 466778899988774 112111111101 234555554444555444322 243 2336677789999
Q ss_pred EEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEec
Q 012478 181 GIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFID 260 (462)
Q Consensus 181 GI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie 260 (462)
||++=|.. .++..+.++.++.. +..+.+...++. . .++.++|.+. +|.+++-
T Consensus 83 gv~vh~~~---------------~~~~~~~~~~~~~~----~~~~g~~~~~~~----~----~~~~~~~~~~-~d~i~~~ 134 (211)
T cd00429 83 IITFHAEA---------------TDHLHRTIQLIKEL----GMKAGVALNPGT----P----VEVLEPYLDE-VDLVLVM 134 (211)
T ss_pred EEEECccc---------------hhhHHHHHHHHHHC----CCeEEEEecCCC----C----HHHHHHHHhh-CCEEEEE
Confidence 98875532 12333334333322 222223222211 1 3456666544 7877553
Q ss_pred CCC---C--------HHHHHHHHHhCC----CCceeeeeeecCCCCCCCCHHHHHhcCCCEEeccchHHH
Q 012478 261 ALA---S--------KEEMKAFCEISP----LVPKMANMLEGGGKTPILNPLELEELGFKLVAYPLSLIG 315 (462)
Q Consensus 261 ~~~---s--------~eei~~i~~~v~----~vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~ll~ 315 (462)
++. + .+.++++.+..+ .+|. ++. ||-++ -+..++.+.|+..++.+..++.
T Consensus 135 ~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi---~v~-GGI~~-env~~~~~~gad~iivgsai~~ 199 (211)
T cd00429 135 SVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLI---EVD-GGINL-ETIPLLAEAGADVLVAGSALFG 199 (211)
T ss_pred EECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEE---EEE-CCCCH-HHHHHHHHcCCCEEEECHHHhC
Confidence 321 1 123444443332 1332 223 35554 4568889999999999887664
No 482
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=80.85 E-value=6.1 Score=40.61 Aligned_cols=133 Identities=15% Similarity=0.136 Sum_probs=82.9
Q ss_pred HHHHHhCccEEEeCCCCCC-CCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhH
Q 012478 172 KGYIKAGFAGIILEDQVSP-KGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFA 250 (462)
Q Consensus 172 k~l~~AGaaGI~IEDq~~P-KrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~ 250 (462)
+.++++|..+|-+-.-..- -.+|..+. .+++.+|+++.++.+.++. ++-|++=-|.-.. +.....+-.+.|+
T Consensus 31 ri~e~~Gf~ai~~Sg~~~a~~~lG~PD~-g~l~~~e~~~~~~~I~~~~-----~iPviaD~d~GyG-~~~~v~r~V~~~~ 103 (292)
T PRK11320 31 LLAERAGFKAIYLSGGGVAAASLGLPDL-GITTLDDVLIDVRRITDAC-----DLPLLVDIDTGFG-GAFNIARTVKSMI 103 (292)
T ss_pred HHHHHcCCCEEEeCHHHHHhHhcCCCCC-CCCCHHHHHHHHHHHHhcc-----CCCEEEECCCCCC-CHHHHHHHHHHHH
Confidence 5777899999988764321 34565543 3899999999999887764 3445665554322 5566777799999
Q ss_pred hcCCcEEEecCC--------------CCH-HHHHHHH---HhCCCCceeeeeeecCCCCCCCC-----HHHHHhcCCCEE
Q 012478 251 DAGADVLFIDAL--------------ASK-EEMKAFC---EISPLVPKMANMLEGGGKTPILN-----PLELEELGFKLV 307 (462)
Q Consensus 251 eAGAD~Ifie~~--------------~s~-eei~~i~---~~v~~vP~~~N~l~~~g~tP~ls-----~~eL~~lGv~~V 307 (462)
+|||-+|.||-- -+. +.+++|. +.-...+.++|..-..-....+. ...+.++|...|
T Consensus 104 ~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~aY~eAGAD~i 183 (292)
T PRK11320 104 KAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGADMI 183 (292)
T ss_pred HcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHHHHHHHHHHHHcCCCEE
Confidence 999999999741 133 3334443 22223456776542100001111 245778899988
Q ss_pred eccc
Q 012478 308 AYPL 311 (462)
Q Consensus 308 ~yp~ 311 (462)
..+.
T Consensus 184 fi~~ 187 (292)
T PRK11320 184 FPEA 187 (292)
T ss_pred EecC
Confidence 8865
No 483
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=80.84 E-value=18 Score=38.95 Aligned_cols=107 Identities=21% Similarity=0.187 Sum_probs=73.2
Q ss_pred CCHHHHHHHHHHHHh---hcCCcEEEeCCCCCC-CHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHH
Q 012478 133 ISYGEMVDQGQLITQ---AVSIPVIGDGDNGYG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAV 208 (462)
Q Consensus 133 vsl~Eml~~~~~I~r---a~~iPVIaD~DtGyG-~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~ 208 (462)
.|.+|.++.+....+ ..++.+..++++.+. ++..+.+.++.++++||.-|+|=|.++ ...+.++.
T Consensus 110 ~t~~e~l~~~~~~v~ya~~~g~~~~~~~Ed~~rt~~~~l~~~~~~~~~~ga~~i~l~DTvG-----------~~~P~~~~ 178 (409)
T COG0119 110 KTREEVLERAVDAVEYARDHGLEVRFSAEDATRTDPEFLAEVVKAAIEAGADRINLPDTVG-----------VATPNEVA 178 (409)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEEEEeeccccCCHHHHHHHHHHHHHcCCcEEEECCCcC-----------ccCHHHHH
Confidence 788888877665544 345999999999987 568899999999999999999999872 33456777
Q ss_pred HHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEE
Q 012478 209 MRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVL 257 (462)
Q Consensus 209 ~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~I 257 (462)
+.|++.+..-.. ...+=+-+.- ++--|+.-..+..+|||+.|
T Consensus 179 ~~i~~l~~~v~~-~~~l~~H~Hn------D~G~AvANslaAv~aGa~~v 220 (409)
T COG0119 179 DIIEALKANVPN-KVILSVHCHN------DLGMAVANSLAAVEAGADQV 220 (409)
T ss_pred HHHHHHHHhCCC-CCeEEEEecC------CcchHHHHHHHHHHcCCcEE
Confidence 777777655320 0112222222 33445666777777888755
No 484
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=80.81 E-value=31 Score=34.25 Aligned_cols=108 Identities=19% Similarity=0.167 Sum_probs=68.0
Q ss_pred CCHHHHHHHHHHHH---hhcCCcEEEeCCCCCC-CHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHH
Q 012478 133 ISYGEMVDQGQLIT---QAVSIPVIGDGDNGYG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAV 208 (462)
Q Consensus 133 vsl~Eml~~~~~I~---ra~~iPVIaD~DtGyG-~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~ 208 (462)
.+.++.++.+..+. +..+..|.+-.++++. ++..+...++++.++|+..|.|-|.. |. ..++++.
T Consensus 107 ~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~-----G~------~~P~~v~ 175 (268)
T cd07940 107 KTREEVLERAVEAVEYAKSHGLDVEFSAEDATRTDLDFLIEVVEAAIEAGATTINIPDTV-----GY------LTPEEFG 175 (268)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCeEEEeeecCCCCCHHHHHHHHHHHHHcCCCEEEECCCC-----CC------CCHHHHH
Confidence 34555555444433 2335777777777644 56788999999999999999999986 43 3345666
Q ss_pred HHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEE
Q 012478 209 MRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVL 257 (462)
Q Consensus 209 ~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~I 257 (462)
+.++++++.-.+ .+..|-..+= ..+.-|+.-+.+..++||+.|
T Consensus 176 ~lv~~l~~~~~~--~~i~l~~H~H----n~~GlA~An~laAi~aG~~~i 218 (268)
T cd07940 176 ELIKKLKENVPN--IKVPISVHCH----NDLGLAVANSLAAVEAGARQV 218 (268)
T ss_pred HHHHHHHHhCCC--CceeEEEEec----CCcchHHHHHHHHHHhCCCEE
Confidence 666666654311 0133322221 123345777888889999975
No 485
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=80.68 E-value=62 Score=32.00 Aligned_cols=153 Identities=16% Similarity=0.042 Sum_probs=92.1
Q ss_pred HHHHHHHhCC--CceEecccCChHHHHHHHHhCCcEEEecc-HHH--HhhhccCCCCCCCCHHHHHHHHHHHHh---hcC
Q 012478 79 KSLRQILELP--GVHQGPACFDALSAKLVEKSGFSFCFTSG-FSI--SAARLALPDTGFISYGEMVDQGQLITQ---AVS 150 (462)
Q Consensus 79 ~~LR~ll~~~--~~iv~p~ayDalSArl~e~aGfdaI~vSG-~av--Sas~lG~PD~g~vsl~Eml~~~~~I~r---a~~ 150 (462)
+.++++.+.. -.+.+..-.+.-....+.++|++.+.+.. ..- .-..+ ..+.+|.++.+..+.+ ..+
T Consensus 50 e~~~~l~~~~~~~~~~~~~r~~~~~v~~a~~~g~~~i~i~~~~s~~~~~~~~------~~~~~~~~~~~~~~i~~a~~~G 123 (259)
T cd07939 50 EAIRAIVALGLPARLIVWCRAVKEDIEAALRCGVTAVHISIPVSDIHLAHKL------GKDRAWVLDQLRRLVGRAKDRG 123 (259)
T ss_pred HHHHHHHhcCCCCEEEEeccCCHHHHHHHHhCCcCEEEEEEecCHHHHHHHh------CCCHHHHHHHHHHHHHHHHHCC
Confidence 4566665522 22444332333344566678999877762 111 10112 2566776655554433 346
Q ss_pred CcEEEeCCCCCC-CHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEE
Q 012478 151 IPVIGDGDNGYG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVA 229 (462)
Q Consensus 151 iPVIaD~DtGyG-~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiA 229 (462)
+.|.+-.+..+. ++..+.+.++++.++|+..|.|=|.. |. ..++++.+.++++++.- +..+-+-.
T Consensus 124 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~-----G~------~~P~~v~~lv~~l~~~~---~~~l~~H~ 189 (259)
T cd07939 124 LFVSVGAEDASRADPDFLIEFAEVAQEAGADRLRFADTV-----GI------LDPFTTYELIRRLRAAT---DLPLEFHA 189 (259)
T ss_pred CeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEeCCCC-----CC------CCHHHHHHHHHHHHHhc---CCeEEEEe
Confidence 777777777654 57889999999999999999999985 43 34566777777666542 22333333
Q ss_pred ecchhhcccHHHHHHHHHHhHhcCCcEE
Q 012478 230 RTDSRQALSLEESLRRSRAFADAGADVL 257 (462)
Q Consensus 230 RTDA~~~~gldeAI~RakAy~eAGAD~I 257 (462)
..| +.-++.-+.+..++||+.|
T Consensus 190 Hn~------~Gla~An~laAi~aG~~~v 211 (259)
T cd07939 190 HND------LGLATANTLAAVRAGATHV 211 (259)
T ss_pred cCC------CChHHHHHHHHHHhCCCEE
Confidence 332 2344667777789999964
No 486
>cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine.
Probab=80.60 E-value=69 Score=34.44 Aligned_cols=184 Identities=19% Similarity=0.206 Sum_probs=113.9
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHhh----cCCc-E-EEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCC
Q 012478 125 LALPDTGFISYGEMVDQGQLITQA----VSIP-V-IGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRG 198 (462)
Q Consensus 125 lG~PD~g~vsl~Eml~~~~~I~ra----~~iP-V-IaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~g 198 (462)
.++.|....+++|-+..+....+. ++-. + .+-. .|+...+.+..+...++|+.++.|.=-. +|..
T Consensus 161 E~l~~q~~~p~~eRv~a~~~a~~~a~~eTG~~~~ya~Ni---T~~~~em~~ra~~~~~~G~~~~mv~~~~----~G~~-- 231 (391)
T cd08209 161 EILFDNPLAPALERIRACRPVLQEVYEQTGRRTLYAVNL---TGPVFTLKEKARRLVEAGANALLFNVFA----YGLD-- 231 (391)
T ss_pred ccCCCCCCCCHHHHHHHHHHHHHHHHHhhCCcceEEEEc---CCCHHHHHHHHHHHHHhCCCEEEEeccc----cchH--
Confidence 356777778888877766555442 2221 1 1111 2456788888999999999999985443 5542
Q ss_pred CcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhh------cccHHHHHHHHHHhHhcCCcEEEecCC-----CCHHH
Q 012478 199 RKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQ------ALSLEESLRRSRAFADAGADVLFIDAL-----ASKEE 267 (462)
Q Consensus 199 k~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~------~~gldeAI~RakAy~eAGAD~Ifie~~-----~s~ee 267 (462)
-+++.++- ...++.|.|.-.-.+ .+|+.-.+--++.+.=||||.+.++++ -+.++
T Consensus 232 -----------~l~~l~~~---~~~~lpIhaHra~~ga~~~~~~~Gis~~~~l~kl~RLaGaD~~~~~~~~Gk~~~~~~~ 297 (391)
T cd08209 232 -----------VLEALASD---PEINVPIFAHPAFAGALYGSPDYGIAASVLLGTLMRLAGADAVLFPSPYGSVALSKEE 297 (391)
T ss_pred -----------HHHHHHhc---CcCCcEEEecCCcccccccCCCCCCcHHHHHHHHHHHcCCCccccCCccCCcCCCHHH
Confidence 12222211 113566776643322 246665455688888899999988765 35667
Q ss_pred HHHHHHhCCC---CceeeeeeecCCCCCCCCHHHHHhcCCCEEeccch-------HHHHHHHHHHHHHHHHHcCC
Q 012478 268 MKAFCEISPL---VPKMANMLEGGGKTPILNPLELEELGFKLVAYPLS-------LIGVSVRAMQDALTAIKGGR 332 (462)
Q Consensus 268 i~~i~~~v~~---vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~-------ll~aa~~Am~~~l~~l~~g~ 332 (462)
..++++.... +...+-+ ..+|..|..-++-+..+|-+.++.... -..+..+|+++++++..+|.
T Consensus 298 ~~~~~~~~~~~~~~k~~~Pv-~sgG~~~g~vp~~~~~~G~Dvi~~~GGGi~gHp~G~~aGa~A~rqA~ea~~~G~ 371 (391)
T cd08209 298 ALAIAEALRRGGAFKGVFPV-PSAGIHPGLVPQLLRDFGTDVILNAGGGIHGHPDGAAAGVRAFREAIDAVLAGE 371 (391)
T ss_pred HHHHHHHHhCcCCCCCceEe-cCCCCChhHHHHHHHHhCCceEEecCcceecCCCCchhHHHHHHHHHHHHhcCC
Confidence 7777665311 1111112 244667777778899999886655322 44678899999999988774
No 487
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=80.35 E-value=25 Score=35.49 Aligned_cols=132 Identities=14% Similarity=0.113 Sum_probs=79.0
Q ss_pred HHHHHHHhCCcEEEec---cHHHHhhhccCCCCCCCCHHHHHHHHHHHHh---hcCCcEE------EeCCCC-CCCHHHH
Q 012478 101 SAKLVEKSGFSFCFTS---GFSISAARLALPDTGFISYGEMVDQGQLITQ---AVSIPVI------GDGDNG-YGNAMNV 167 (462)
Q Consensus 101 SArl~e~aGfdaI~vS---G~avSas~lG~PD~g~vsl~Eml~~~~~I~r---a~~iPVI------aD~DtG-yG~~~nv 167 (462)
-...+-++|.+.+-+. +-...-..++ .+.++.++.+....+ ..++-+. .+.+++ .-++..+
T Consensus 78 dv~~A~~~g~~~i~i~~~~Sd~~~~~~~~------~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~ 151 (274)
T cd07938 78 GAERALAAGVDEVAVFVSASETFSQKNIN------CSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERV 151 (274)
T ss_pred HHHHHHHcCcCEEEEEEecCHHHHHHHcC------CCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHH
Confidence 3456667788875554 2111111122 456666666655443 2345553 344432 2356778
Q ss_pred HHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHH
Q 012478 168 KRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSR 247 (462)
Q Consensus 168 ~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~Rak 247 (462)
.+.++.+.++|+..|.|-|.. |. ..+.++.+.|+++++.-. +..+-+-...|- --|+.-+.
T Consensus 152 ~~~~~~~~~~Ga~~i~l~DT~-----G~------~~P~~v~~lv~~l~~~~~--~~~i~~H~Hnd~------GlA~AN~l 212 (274)
T cd07938 152 AEVAERLLDLGCDEISLGDTI-----GV------ATPAQVRRLLEAVLERFP--DEKLALHFHDTR------GQALANIL 212 (274)
T ss_pred HHHHHHHHHcCCCEEEECCCC-----Cc------cCHHHHHHHHHHHHHHCC--CCeEEEEECCCC------ChHHHHHH
Confidence 899999999999999999986 33 345667777777765421 123334444332 24566788
Q ss_pred HhHhcCCcEE
Q 012478 248 AFADAGADVL 257 (462)
Q Consensus 248 Ay~eAGAD~I 257 (462)
+..+||||.|
T Consensus 213 aA~~aGa~~i 222 (274)
T cd07938 213 AALEAGVRRF 222 (274)
T ss_pred HHHHhCCCEE
Confidence 8889999964
No 488
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=80.32 E-value=30 Score=35.04 Aligned_cols=116 Identities=20% Similarity=0.235 Sum_probs=70.0
Q ss_pred CHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEecCCCCHHHHHHHH-HhCCCCcee
Q 012478 203 SREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDALASKEEMKAFC-EISPLVPKM 281 (462)
Q Consensus 203 p~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~~~s~eei~~i~-~~v~~vP~~ 281 (462)
+.||.++.+..++++.+ .++|--+--....-...|..+.+.+.|.+.-+++|+++..-.+... .++- +|..
T Consensus 60 tLeeIi~~m~~a~~~Gk-------~VvRLhSGDpsiYgA~~EQm~~L~~~gI~yevvPGVss~~AAAA~L~~ELT-~P~v 131 (254)
T COG2875 60 TLEEIIDLMVDAVREGK-------DVVRLHSGDPSIYGALAEQMRELEALGIPYEVVPGVSSFAAAAAALGIELT-VPGV 131 (254)
T ss_pred CHHHHHHHHHHHHHcCC-------eEEEeecCChhHHHHHHHHHHHHHHcCCCeEEeCCchHHHHHHHHhCceee-cCCc
Confidence 56888888777766543 2556433111123455677888999999999999998743332222 2221 3322
Q ss_pred ee---eeecCCCCCCC---CHHHHHhcCCCEEeccchHHHHHHHHHHHHHHHHHcCC
Q 012478 282 AN---MLEGGGKTPIL---NPLELEELGFKLVAYPLSLIGVSVRAMQDALTAIKGGR 332 (462)
Q Consensus 282 ~N---~l~~~g~tP~l---s~~eL~~lGv~~V~yp~~ll~aa~~Am~~~l~~l~~g~ 332 (462)
.+ ++-..|++|.. ++++|.+.|..++|| .+...+.++.+.|..|.
T Consensus 132 sQtvilTR~sgrt~vpe~e~l~~la~~~aTm~I~------L~v~~I~~vv~~L~~g~ 182 (254)
T COG2875 132 SQTVILTRPSGRTPVPEKESLAALAKHGATMVIF------LGVHAIDKVVEELLEGG 182 (254)
T ss_pred ceeEEEEccccCCCCCchhHHHHHHhcCceeEee------ehhhHHHHHHHHHhcCC
Confidence 22 22333667644 345667778888887 34566778888888854
No 489
>cd03320 OSBS o-Succinylbenzoate synthase (OSBS) catalyzes the conversion of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate (SHCHC) to 4-(2'-carboxyphenyl)-4-oxobutyrate (o-succinylbenzoate or OSB), a reaction in the menaquinone biosynthetic pathway. Menaquinone is an essential cofactor for anaerobic growth in eubacteria and some archaea. OSBS belongs to the enolase superfamily of enzymes, characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.
Probab=80.23 E-value=22 Score=35.19 Aligned_cols=122 Identities=23% Similarity=0.305 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHH
Q 012478 166 NVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRR 245 (462)
Q Consensus 166 nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~R 245 (462)
...+.++.+.+.|...+||- +|.. +.++-+++|++++++. |+++.+ |-|+-.....++|++.
T Consensus 85 ~~~~~~~~~~~~Gf~~~KiK-------vg~~------~~~~d~~~v~~vr~~~---g~~~~l--~vDaN~~w~~~~A~~~ 146 (263)
T cd03320 85 AALGEAKAAYGGGYRTVKLK-------VGAT------SFEEDLARLRALREAL---PADAKL--RLDANGGWSLEEALAF 146 (263)
T ss_pred HHHHHHHHHHhCCCCEEEEE-------ECCC------ChHHHHHHHHHHHHHc---CCCCeE--EEeCCCCCCHHHHHHH
Confidence 34455677778899999993 2321 2245578888887664 455555 5688777788999999
Q ss_pred HHHhHhcCCcEEEecCCCCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHHHHHhcC-CCEEeccc
Q 012478 246 SRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPLELEELG-FKLVAYPL 311 (462)
Q Consensus 246 akAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~eL~~lG-v~~V~yp~ 311 (462)
++++.+. +..|+|-+-..+++..+.+....+|+.+.-.. .-.....+|.+.| +..+..=.
T Consensus 147 ~~~l~~~--~i~~iEqP~~~~d~~~~~~l~~~~PIa~dEs~----~~~~~~~~~~~~~~~d~v~~k~ 207 (263)
T cd03320 147 LEALAAG--RIEYIEQPLPPDDLAELRRLAAGVPIALDESL----RRLDDPLALAAAGALGALVLKP 207 (263)
T ss_pred HHhhccc--CCceEECCCChHHHHHHHHhhcCCCeeeCCcc----ccccCHHHHHhcCCCCEEEECc
Confidence 9999885 45688877555555555442222566543211 1112466666665 55555433
No 490
>TIGR03332 salvage_mtnW 2,3-diketo-5-methylthiopentyl-1-phosphate enolase. Members of this family are the methionine salvage pathway enzyme 2,3-diketo-5-methylthiopentyl-1-phosphate enolase, a homolog of RuBisCO. This protein family seems restricted to Bacillus subtilis and close relatives, where two separate proteins carry the enolase and phosphatase activities that in other species occur in a single protein, MtnC (TIGR01691).
Probab=80.13 E-value=77 Score=34.25 Aligned_cols=186 Identities=17% Similarity=0.200 Sum_probs=113.9
Q ss_pred ccCCCCCCCCHHHHHHHHHHHHhh----cCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCc
Q 012478 125 LALPDTGFISYGEMVDQGQLITQA----VSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRK 200 (462)
Q Consensus 125 lG~PD~g~vsl~Eml~~~~~I~ra----~~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~ 200 (462)
.++.|...-+++|-+..+....+. ++-..+- +.+=-++..++.+..+...++|+.++.+.=-. +|..
T Consensus 176 E~l~dq~~~p~~~Rv~~~~~a~~~a~~eTG~~~~y-~~NiT~~~~em~~ra~~a~~~G~~~~mv~~~~----~G~~---- 246 (407)
T TIGR03332 176 EILFETGLAPFEKRITEGKEVLQEVYEQTGHKTLY-AVNLTGRTFDLKDKAKRAAELGADVLLFNVFA----YGLD---- 246 (407)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCcceE-eecCCCCHHHHHHHHHHHHHhCCCEEEEeccc----cChH----
Confidence 356677777888877766554432 2211110 01111445568888889999999999995543 5542
Q ss_pred ccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhh------cccHHHHHHHHHHhHhcCCcEEEecCC-----CCHHHHH
Q 012478 201 VVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQ------ALSLEESLRRSRAFADAGADVLFIDAL-----ASKEEMK 269 (462)
Q Consensus 201 Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~------~~gldeAI~RakAy~eAGAD~Ifie~~-----~s~eei~ 269 (462)
-+++.++.. ..++.|.+.-.-.+ .+|+.-.+--+|.+.=+|||.+.++.+ -+.++..
T Consensus 247 ---------~~~~l~~~~---~~~lpihaHra~~ga~~r~~~~Gis~~~~l~kl~RLaGaD~~~~~~~~Gk~~~~~~~~~ 314 (407)
T TIGR03332 247 ---------VLQSLAEDD---EIPVPIMAHPAVSGAYTSSPFYGFSHSLLLGKLLRYAGADFSLFPSPYGSVALEREDAL 314 (407)
T ss_pred ---------HHHHHHhcC---CCCcEEEEecCcccccccCCCCcccHHHHHHHHHHhcCcCccccCCcccCCCCCHHHHH
Confidence 123333221 13566666533322 246665556688888999999988765 3567777
Q ss_pred HHHHhCCC----CceeeeeeecCCCCCCCCHHHHHhcCCCEEeccch-------HHHHHHHHHHHHHHHHHcCC
Q 012478 270 AFCEISPL----VPKMANMLEGGGKTPILNPLELEELGFKLVAYPLS-------LIGVSVRAMQDALTAIKGGR 332 (462)
Q Consensus 270 ~i~~~v~~----vP~~~N~l~~~g~tP~ls~~eL~~lGv~~V~yp~~-------ll~aa~~Am~~~l~~l~~g~ 332 (462)
++++.... ++..+- +..+|-.|..-++-++.+|-..++.... -..+..+|+++++++..+|.
T Consensus 315 ~~~~~~~~p~~~~k~~~P-v~sGG~~~~~~p~~~~~~G~Dvil~~GGGi~gHP~G~~aGa~A~rqA~ea~~~g~ 387 (407)
T TIGR03332 315 AISKELTEDDAPFKKTFA-VPSAGIHPGMVPLIMRDFGIDHIINAGGGIHGHPNGAQGGGRAFRAAIDAVLEAK 387 (407)
T ss_pred HHHHHHhccccCCCccEE-ecCCCcChhHHHHHHHHhCCceEEecCcccccCCCCchhhHHHHHHHHHHHhcCC
Confidence 77765321 111111 2345677777778899999886655222 34578899999999998774
No 491
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=80.10 E-value=8.8 Score=35.84 Aligned_cols=77 Identities=17% Similarity=0.110 Sum_probs=50.8
Q ss_pred ecccCChHHHHHHHHhCCcEEEec-cHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHH
Q 012478 93 GPACFDALSAKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTV 171 (462)
Q Consensus 93 ~p~ayDalSArl~e~aGfdaI~vS-G~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtV 171 (462)
++++.+...+..+...|++.+.+. +... ...|. ....+.++.+.+..++|+++|. |- ++ +++
T Consensus 110 ~~~~~t~~e~~~~~~~~~d~v~~~~~~~~--~~~~~--------~~~~~~i~~~~~~~~~~i~~~G--GI-~~----~~i 172 (202)
T cd04726 110 LIGVEDPEKRAKLLKLGVDIVILHRGIDA--QAAGG--------WWPEDDLKKVKKLLGVKVAVAG--GI-TP----DTL 172 (202)
T ss_pred EeCCCCHHHHHHHHHCCCCEEEEcCcccc--cccCC--------CCCHHHHHHHHhhcCCCEEEEC--Cc-CH----HHH
Confidence 489999999988888899988774 2211 11221 1233455555554679999993 11 33 456
Q ss_pred HHHHHhCccEEEeCC
Q 012478 172 KGYIKAGFAGIILED 186 (462)
Q Consensus 172 k~l~~AGaaGI~IED 186 (462)
+.+.++||+++-+--
T Consensus 173 ~~~~~~Gad~vvvGs 187 (202)
T cd04726 173 PEFKKAGADIVIVGR 187 (202)
T ss_pred HHHHhcCCCEEEEee
Confidence 788899999998843
No 492
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=80.08 E-value=57 Score=31.17 Aligned_cols=77 Identities=13% Similarity=0.055 Sum_probs=54.3
Q ss_pred HHHHHHhCCcEEEec-cHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhc-CCcEEEeCCCCCCCHHHHHHHHHHHHHhCc
Q 012478 102 AKLVEKSGFSFCFTS-GFSISAARLALPDTGFISYGEMVDQGQLITQAV-SIPVIGDGDNGYGNAMNVKRTVKGYIKAGF 179 (462)
Q Consensus 102 Arl~e~aGfdaI~vS-G~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~-~iPVIaD~DtGyG~~~nv~rtVk~l~~AGa 179 (462)
++.+-+.|+|.+-+. -++.- .-| .++++.+...++++.+ ++|+.+=.++|+-+.+++.+.++...++||
T Consensus 75 ve~A~~~GAdevdvv~~~g~~--~~~-------~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~Ga 145 (203)
T cd00959 75 AREAIADGADEIDMVINIGAL--KSG-------DYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEAGA 145 (203)
T ss_pred HHHHHHcCCCEEEEeecHHHH--hCC-------CHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCC
Confidence 344456799988876 22210 001 2356666677776665 588877788888788899999999999999
Q ss_pred cEEEeCCC
Q 012478 180 AGIILEDQ 187 (462)
Q Consensus 180 aGI~IEDq 187 (462)
+-|+.--+
T Consensus 146 D~IKTsTG 153 (203)
T cd00959 146 DFIKTSTG 153 (203)
T ss_pred CEEEcCCC
Confidence 99999643
No 493
>PRK15072 bifunctional D-altronate/D-mannonate dehydratase; Provisional
Probab=80.07 E-value=39 Score=35.76 Aligned_cols=110 Identities=14% Similarity=0.203 Sum_probs=69.0
Q ss_pred CHHHHHHHHHHHHHhCccEEEeCCCCCCCCCC---CCCCC--c-------------cc----CHHHHHHHHHHHHHHHHh
Q 012478 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCG---HTRGR--K-------------VV----SREEAVMRIKAAVDARKE 220 (462)
Q Consensus 163 ~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCG---H~~gk--~-------------Lv----p~ee~~~kI~AA~~Ar~~ 220 (462)
++..+.+.++++.+.|..++||-=+. |.-+. +..++ . +. ..++.+++|++++++.
T Consensus 127 ~~~~~~~~a~~~~~~Gf~~~KiKvg~-~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~v~avre~~-- 203 (404)
T PRK15072 127 DIDELLDDVARHLELGYKAIRVQCGV-PGLKTTYGVSKGKGLAYEPATKGLLPEEELWSTEKYLRFVPKLFEAVRNKF-- 203 (404)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCC-CCcccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHhhh--
Confidence 45666677788888999999994211 00000 00000 0 01 1233456777776653
Q ss_pred hCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEecCC---CCHHHHHHHHHhCCCCcee
Q 012478 221 SGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDAL---ASKEEMKAFCEISPLVPKM 281 (462)
Q Consensus 221 ~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~~---~s~eei~~i~~~v~~vP~~ 281 (462)
|+++.|. .|+-....+++|++.++++.+. +..|+|-+ .+.+.++++.+..+ +|+.
T Consensus 204 -G~~~~l~--vDaN~~w~~~~A~~~~~~l~~~--~l~~iEeP~~~~d~~~~~~L~~~~~-iPIa 261 (404)
T PRK15072 204 -GFDLHLL--HDVHHRLTPIEAARLGKSLEPY--RLFWLEDPTPAENQEAFRLIRQHTT-TPLA 261 (404)
T ss_pred -CCCceEE--EECCCCCCHHHHHHHHHhcccc--CCcEEECCCCccCHHHHHHHHhcCC-CCEE
Confidence 5666543 5777778899999999999876 56778765 35678888888765 5654
No 494
>CHL00040 rbcL ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit
Probab=79.91 E-value=49 Score=36.45 Aligned_cols=128 Identities=16% Similarity=0.174 Sum_probs=78.7
Q ss_pred HHHHHhhcCCcEEEeCCCC-CC-CHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHH-H
Q 012478 142 GQLITQAVSIPVIGDGDNG-YG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDA-R 218 (462)
Q Consensus 142 ~~~I~ra~~iPVIaD~DtG-yG-~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~A-r 218 (462)
+|++....+-||+.=+--- -| ++.+..+.+..+...|++=|| .|.. ...++..|.+|-+..+..+++. .
T Consensus 158 ~R~llgv~~RPLigtiiKP~~GLsp~~~A~~~y~~~~GGvD~IK-DDE~-------l~dq~~~p~~eRv~~~~~a~~~a~ 229 (475)
T CHL00040 158 ERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTK-DDEN-------VNSQPFMRWRDRFLFCAEAIYKAQ 229 (475)
T ss_pred HHHHhCCCCCceEEEecccccCCCHHHHHHHHHHHHcCCCcccc-cCcc-------CCCCCCCCHHHHHHHHHHHHHHHH
Confidence 6667777789999876554 34 577888888999999998765 2332 2334566666555444444433 3
Q ss_pred HhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEecCC----CCHHHHHHHHHhCCCCcee
Q 012478 219 KESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFIDAL----ASKEEMKAFCEISPLVPKM 281 (462)
Q Consensus 219 ~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie~~----~s~eei~~i~~~v~~vP~~ 281 (462)
++.|...+.-+. ..+...+|.++|++...++|+.++++.-. .....+++.++.. .+|+.
T Consensus 230 ~eTG~~~~y~~N---iTa~~~~em~~ra~~a~e~G~~~~mv~~~~~G~~al~~l~~~~~~~-~l~Ih 292 (475)
T CHL00040 230 AETGEIKGHYLN---ATAGTCEEMYKRAVFARELGVPIVMHDYLTGGFTANTSLAHYCRDN-GLLLH 292 (475)
T ss_pred HhhCCcceeeec---cCCCCHHHHHHHHHHHHHcCCceEEEeccccccchHHHHHHHhhhc-CceEE
Confidence 334422221221 11125799999999999999999988543 3345555544443 34543
No 495
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=79.78 E-value=32 Score=33.62 Aligned_cols=124 Identities=19% Similarity=0.294 Sum_probs=77.4
Q ss_pred CHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHH
Q 012478 163 NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEES 242 (462)
Q Consensus 163 ~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeA 242 (462)
+.+++.+.++.+.+.|+..|-|-=.. ....+-|+.+++. . ++++|=|=|=- .
T Consensus 14 ~~~~a~~ia~al~~gGi~~iEit~~t----------------p~a~~~I~~l~~~---~-~~~~vGAGTVl----~---- 65 (201)
T PRK06015 14 DVEHAVPLARALAAGGLPAIEITLRT----------------PAALDAIRAVAAE---V-EEAIVGAGTIL----N---- 65 (201)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCC----------------ccHHHHHHHHHHH---C-CCCEEeeEeCc----C----
Confidence 56788999999999999988775432 1223334333322 2 46555555422 2
Q ss_pred HHHHHHhHhcCCcEEEecCCCCHHHHHHHHHhCCCCceeeeeeecCCCCCCCCHH---HHHhcCCCEEe-ccchHHH--H
Q 012478 243 LRRSRAFADAGADVLFIDALASKEEMKAFCEISPLVPKMANMLEGGGKTPILNPL---ELEELGFKLVA-YPLSLIG--V 316 (462)
Q Consensus 243 I~RakAy~eAGAD~Ifie~~~s~eei~~i~~~v~~vP~~~N~l~~~g~tP~ls~~---eL~~lGv~~V~-yp~~ll~--a 316 (462)
.+.++...+|||+-|+-+++. +++.+.+++.. +|.+ +| .+|+. +..++|++.|- ||...+. .
T Consensus 66 ~e~a~~ai~aGA~FivSP~~~--~~vi~~a~~~~-i~~i------PG---~~TptEi~~A~~~Ga~~vK~FPa~~~GG~~ 133 (201)
T PRK06015 66 AKQFEDAAKAGSRFIVSPGTT--QELLAAANDSD-VPLL------PG---AATPSEVMALREEGYTVLKFFPAEQAGGAA 133 (201)
T ss_pred HHHHHHHHHcCCCEEECCCCC--HHHHHHHHHcC-CCEe------CC---CCCHHHHHHHHHCCCCEEEECCchhhCCHH
Confidence 346788889999999988865 46666676653 4433 23 23554 45678999885 5766663 4
Q ss_pred HHHHHHHHHH
Q 012478 317 SVRAMQDALT 326 (462)
Q Consensus 317 a~~Am~~~l~ 326 (462)
-+++++.-+-
T Consensus 134 yikal~~plp 143 (201)
T PRK06015 134 FLKALSSPLA 143 (201)
T ss_pred HHHHHHhhCC
Confidence 5666655543
No 496
>PF00016 RuBisCO_large: Ribulose bisphosphate carboxylase large chain, catalytic domain; InterPro: IPR000685 Ribulose bisphosphate carboxylase (RuBisCO) [, ] catalyses the initial step in Calvin's reductive pentose phosphate cycle in plants as well as purple and green bacteria. It consists of a large catalytic unit and a small subunit of undetermined function. In plants, the large subunit is coded by the chloroplastic genome while the small subunit is encoded in the nuclear genome. Molecular activation of RuBisCO by CO2 involves the formation of a carbamate with the epsilon-amino group of a conserved lysine residue. This carbamate is stabilised by a magnesium ion. One of the ligands of the magnesium ion is an aspartic acid residue close to the active site lysine [].; GO: 0000287 magnesium ion binding, 0016984 ribulose-bisphosphate carboxylase activity, 0015977 carbon fixation, 0009536 plastid; PDB: 3AXM_A 1WDD_A 3AXK_A 1SVD_A 1RXO_B 1UPP_C 1UPM_R 1RCO_L 8RUC_G 1RCX_B ....
Probab=79.70 E-value=41 Score=35.01 Aligned_cols=123 Identities=19% Similarity=0.209 Sum_probs=74.7
Q ss_pred HHHHHHHhhcCCcEEEeCCCC-CC-CHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHH-
Q 012478 140 DQGQLITQAVSIPVIGDGDNG-YG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVD- 216 (462)
Q Consensus 140 ~~~~~I~ra~~iPVIaD~DtG-yG-~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~- 216 (462)
+-+|++....+-||+.=+=-- -| ++.+..+.+.++...|++=||= |.. +..++.-|.+|-+..+..|++
T Consensus 3 ~G~R~~lgv~~RPL~~tiiKP~~Glsp~~~a~~~y~~a~GG~D~IKD-DE~-------l~~q~f~p~~eRv~~~~~a~~~ 74 (309)
T PF00016_consen 3 EGIRELLGVYDRPLLGTIIKPKLGLSPEELAELAYEFALGGVDFIKD-DEN-------LANQPFCPFEERVPACMEAVDR 74 (309)
T ss_dssp HHHHHHHTSSSS-EEEEEESSSSTS-HHHHHHHHHHHHHTTSSEEEE--TT--------SSBTTBEHHHHHHHHHHHHHH
T ss_pred eeeehhhhhccceEEccccCcceeecccchhhHHHhhhhcccceecc-ccc-------ccCcccccHhHhHHhhhhhhhc
Confidence 345777777789988765443 24 5788899999999999998873 432 123455666655555444443
Q ss_pred HHHhhCCCeEEEEe-cchhhcccHHHHHHHHHHhHhcCCcEEEecCC----CCHHHHHHHHHh
Q 012478 217 ARKESGSDIVIVAR-TDSRQALSLEESLRRSRAFADAGADVLFIDAL----ASKEEMKAFCEI 274 (462)
Q Consensus 217 Ar~~~g~d~vIiAR-TDA~~~~gldeAI~RakAy~eAGAD~Ifie~~----~s~eei~~i~~~ 274 (462)
|.++.|...+-... |. ...+|.++|++...++|++++++.-+ .....+.+.++.
T Consensus 75 a~~eTG~~~ly~~NiT~----~~~~em~~ra~~a~~~G~~~vmv~~~~~G~~~~~~l~~~~~~ 133 (309)
T PF00016_consen 75 AEEETGEKKLYAANITA----DTPDEMIERAEYAKEAGANAVMVNVLTAGFSALQSLAEDARD 133 (309)
T ss_dssp HHHHHSS--EEEEEE-S----SSHHHHHHHHHHHHHHTGSEEEEEHHHHCHHHHHHHHHHHHH
T ss_pred cccccceecceeccccc----ccHHHHHHhhhhhhhhccchhhcccccccccccchhhhhhcc
Confidence 33344433222222 21 13689999999999999999988532 233455555554
No 497
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=79.59 E-value=9.9 Score=37.99 Aligned_cols=179 Identities=17% Similarity=0.182 Sum_probs=96.1
Q ss_pred eeeeeccchhhhhhcccCCCC------ceeeccccc--CCCccccccCchHHHHHHHHhCCCceEecccCChHHHHHHHH
Q 012478 36 TISFNKTNTNTLLLNTATNPG------TINRTRVYR--KNSTGVEACLSPAKSLRQILELPGVHQGPACFDALSAKLVEK 107 (462)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~Pr------~~~~~R~y~--rgs~~~~~a~~~a~~LR~ll~~~~~iv~p~ayDalSArl~e~ 107 (462)
++-||.-..+.+......... |.+. +|. +-.+.++ ...-+.|.+.-++.+...+-++||.-++.++++
T Consensus 12 aVKFQ~~~~~~l~~~~~~~~~y~~~~~~~~~--~~~~~~~~~el~--~e~~~~L~~~~~~~gi~f~stpfd~~s~d~l~~ 87 (241)
T PF03102_consen 12 AVKFQTFTAEELYSPNAYKAPYQSPNGWGDE--SYYELFKKLELS--EEQHKELFEYCKELGIDFFSTPFDEESVDFLEE 87 (241)
T ss_dssp EEEEEEB-HHHHCSGGGGG-------TT-SS--THHHHHHHHSS---HHHHHHHHHHHHHTT-EEEEEE-SHHHHHHHHH
T ss_pred EEEEEEEchhhhcChhhhcccccccCCCCCC--cHHHHHHHhcCC--HHHHHHHHHHHHHcCCEEEECCCCHHHHHHHHH
Confidence 567787777777776543322 2111 110 1111122 233455666667778889999999999999999
Q ss_pred hCCcEEEeccHHHHhhhccCCCCCCCCHHHHHHHHHHHHhhcCCcEEEeCCCCCCCHHHHHHHHHHHHHhCccEEEeCCC
Q 012478 108 SGFSFCFTSGFSISAARLALPDTGFISYGEMVDQGQLITQAVSIPVIGDGDNGYGNAMNVKRTVKGYIKAGFAGIILEDQ 187 (462)
Q Consensus 108 aGfdaI~vSG~avSas~lG~PD~g~vsl~Eml~~~~~I~ra~~iPVIaD~DtGyG~~~nv~rtVk~l~~AGaaGI~IEDq 187 (462)
.|.+++=++|.-+. --.+ .+.+++ ++.|||.. ||-.+...+.++|+.+.+.|..-+.|-=-
T Consensus 88 ~~~~~~KIaS~dl~-------------n~~l---L~~~A~-tgkPvIlS--TG~stl~EI~~Av~~~~~~~~~~l~llHC 148 (241)
T PF03102_consen 88 LGVPAYKIASGDLT-------------NLPL---LEYIAK-TGKPVILS--TGMSTLEEIERAVEVLREAGNEDLVLLHC 148 (241)
T ss_dssp HT-SEEEE-GGGTT--------------HHH---HHHHHT-T-S-EEEE---TT--HHHHHHHHHHHHHHCT--EEEEEE
T ss_pred cCCCEEEecccccc-------------CHHH---HHHHHH-hCCcEEEE--CCCCCHHHHHHHHHHHHhcCCCCEEEEec
Confidence 99999999885532 1223 334433 78999987 66556678999999998889888877542
Q ss_pred CCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEE
Q 012478 188 VSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVL 257 (462)
Q Consensus 188 ~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~I 257 (462)
+ ...| .|.+++ .++++..-++.. + +.++=.|... ++ .-+.+....||.+|
T Consensus 149 ~--------s~YP-~~~e~~--NL~~i~~L~~~f--~-~~vG~SDHt~--g~----~~~~~AvalGA~vI 198 (241)
T PF03102_consen 149 V--------SSYP-TPPEDV--NLRVIPTLKERF--G-VPVGYSDHTD--GI----EAPIAAVALGARVI 198 (241)
T ss_dssp ---------SSSS---GGG----TTHHHHHHHHS--T-SEEEEEE-SS--SS----HHHHHHHHTT-SEE
T ss_pred C--------CCCC-CChHHc--ChHHHHHHHHhc--C-CCEEeCCCCC--Cc----HHHHHHHHcCCeEE
Confidence 2 1111 122222 333333333333 3 5558888754 22 23556678999885
No 498
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=79.57 E-value=22 Score=37.21 Aligned_cols=170 Identities=19% Similarity=0.210 Sum_probs=101.8
Q ss_pred EecccCChHHHHHH------HHhCCcEEEeccHHHHhhhccCCCC-CCCCHHH---HHHHHHHHHhhc-CCcEEEeC---
Q 012478 92 QGPACFDALSAKLV------EKSGFSFCFTSGFSISAARLALPDT-GFISYGE---MVDQGQLITQAV-SIPVIGDG--- 157 (462)
Q Consensus 92 v~p~ayDalSArl~------e~aGfdaI~vSG~avSas~lG~PD~-g~vsl~E---ml~~~~~I~ra~-~iPVIaD~--- 157 (462)
.|||.|-..--.+. .+.|..++.+=|.- .. -..|. +.-.+++ +...++.|.+.. ++-||+|.
T Consensus 44 smPg~~r~s~d~l~~~v~~~~~~Gi~~v~lFgv~-~~---~~KD~~gs~A~~~~g~v~~air~iK~~~p~l~vi~DVclc 119 (320)
T cd04823 44 SMPGVFRLSIDELLKEAEEAVDLGIPAVALFPVT-PP---ELKSEDGSEAYNPDNLVCRAIRAIKEAFPELGIITDVALD 119 (320)
T ss_pred CCCCceeeCHHHHHHHHHHHHHcCCCEEEEecCC-Cc---ccCCcccccccCCCChHHHHHHHHHHhCCCcEEEEeeecc
Confidence 57777654433333 24688888876531 10 01121 2222221 445566676665 47788884
Q ss_pred ---CCCC------C---CHH---HHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhC
Q 012478 158 ---DNGY------G---NAM---NVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESG 222 (462)
Q Consensus 158 ---DtGy------G---~~~---nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g 222 (462)
++|+ | |.. ...+..-.+.+|||+-|-=-|- |=.||.|++++.++.|
T Consensus 120 ~YT~hGHcGil~~~~idND~Tl~~L~~~Avs~A~AGADiVAPSdM-------------------MDGrV~aIR~aLd~~g 180 (320)
T cd04823 120 PYTSHGHDGIVRDGGILNDETVEVLCKQALVQAEAGADIVAPSDM-------------------MDGRIGAIREALDAEG 180 (320)
T ss_pred CCCCCCcceeccCCcCcCHHHHHHHHHHHHHHHHhCCCEEEcccc-------------------hhhHHHHHHHHHHHCC
Confidence 3343 1 332 2334445566899977755443 2346677776666544
Q ss_pred -CCeEEEEecchhh--------------------------cccHHHHHHHHHHhHhcCCcEEEe-cCCCCHHHHHHHHHh
Q 012478 223 -SDIVIVARTDSRQ--------------------------ALSLEESLRRSRAFADAGADVLFI-DALASKEEMKAFCEI 274 (462)
Q Consensus 223 -~d~vIiARTDA~~--------------------------~~gldeAI~RakAy~eAGAD~Ifi-e~~~s~eei~~i~~~ 274 (462)
.+.-|++-+--++ ...-.||++.+..=.+-|||+|+| |+++..+.++.+.+.
T Consensus 181 ~~~v~ImSYsaKyaS~fYGPFRdAa~Sap~fgDRksYQmdp~n~~eAlre~~~Di~EGAD~lMVKPal~YLDIi~~~k~~ 260 (320)
T cd04823 181 FTNVSILSYAAKYASAFYGPFRDALGSAPRKGDKKTYQMDPANSREALREVALDIAEGADMVMVKPGMPYLDIIRRVKDE 260 (320)
T ss_pred CCCCceeechHHhhhhccchhHHHhcCCCCCCCccccCCCCCCHHHHHHHHHhhHHhCCCEEEEcCCchHHHHHHHHHHh
Confidence 2455665543321 012578999999999999999999 789999999999988
Q ss_pred CCCCceeeeee
Q 012478 275 SPLVPKMANML 285 (462)
Q Consensus 275 v~~vP~~~N~l 285 (462)
+. +|+.+=.+
T Consensus 261 ~~-lPvaaYqV 270 (320)
T cd04823 261 FG-VPTFAYQV 270 (320)
T ss_pred cC-CCEEEEEc
Confidence 75 67654333
No 499
>cd08212 RuBisCO_large_I Ribulose bisphosphate carboxylase large chain, Form I. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV , which differ in their taxonomic distribution and subunit composition. Form I is the most abundant class, present in plants, algae, and bacteria, and forms large complexes composed of 8 large and 8 small subunits.
Probab=79.55 E-value=51 Score=36.08 Aligned_cols=128 Identities=16% Similarity=0.212 Sum_probs=77.3
Q ss_pred HHHHHhhcCCcEEEeCCCC-CC-CHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHH-H
Q 012478 142 GQLITQAVSIPVIGDGDNG-YG-NAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDA-R 218 (462)
Q Consensus 142 ~~~I~ra~~iPVIaD~DtG-yG-~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~A-r 218 (462)
+|++....+-||+.=+--- -| ++.+..+.+..+...|++=|| .|.. ...++..|.++-+..+..+++. .
T Consensus 136 ~R~~lgv~~RPL~~tiiKP~iGlsp~~~A~~~~~~~~GGvD~IK-DDE~-------l~~~~~~p~~~Rv~~~~~a~~~a~ 207 (450)
T cd08212 136 ERDRLNKYGRPLLGCTIKPKLGLSAKNYGRVVYECLRGGLDFTK-DDEN-------INSQPFMRWRDRFLFVAEAVNKAQ 207 (450)
T ss_pred HHHHhCCCCCceEEEeccCccCCCHHHHHHHHHHHHccCCcccc-cCcc-------CCCCCCCCHHHHHHHHHHHHHHHH
Confidence 5667777789999886443 24 577888888899888988665 2332 2234455666544444444333 2
Q ss_pred HhhCCCeEEEEecchhhcccHHHHHHHHHHhHhcCCcEEEec---CCCCHHHHHHHHHhCCCCcee
Q 012478 219 KESGSDIVIVARTDSRQALSLEESLRRSRAFADAGADVLFID---ALASKEEMKAFCEISPLVPKM 281 (462)
Q Consensus 219 ~~~g~d~vIiARTDA~~~~gldeAI~RakAy~eAGAD~Ifie---~~~s~eei~~i~~~v~~vP~~ 281 (462)
++.|...+.... ..+...+|.++|++...++|+.++++. +......+++.++.. .+|+.
T Consensus 208 ~eTG~~~~y~~N---iTa~~~~em~~ra~~a~~~G~~~~mv~~~~G~~~l~~l~~~a~~~-~l~Ih 269 (450)
T cd08212 208 AETGEVKGHYLN---VTAGTMEEMYKRAEFAKELGSPIIMHDLLTGFTAIQSLAKWCRDN-GMLLH 269 (450)
T ss_pred HhhCCcceeecc---ccCCCHHHHHHHHHHHHHhCCCeEeeecccccchHHHHHHHhhhc-CceEE
Confidence 333321111111 011247899999999999999999887 444445555554454 34543
No 500
>PRK15129 L-Ala-D/L-Glu epimerase; Provisional
Probab=79.45 E-value=52 Score=33.68 Aligned_cols=79 Identities=18% Similarity=0.186 Sum_probs=57.0
Q ss_pred CCCCHHHHHHHHHHHHHhCccEEEeCCCCCCCCCCCCCCCcccCHHHHHHHHHHHHHHHHhhCCCeEEEEecchhhcccH
Q 012478 160 GYGNAMNVKRTVKGYIKAGFAGIILEDQVSPKGCGHTRGRKVVSREEAVMRIKAAVDARKESGSDIVIVARTDSRQALSL 239 (462)
Q Consensus 160 GyG~~~nv~rtVk~l~~AGaaGI~IEDq~~PKrCGH~~gk~Lvp~ee~~~kI~AA~~Ar~~~g~d~vIiARTDA~~~~gl 239 (462)
|.+++..+.+.++.+.+.|...+||- +|. ++-+++|++++++. +++. =|-|+-.....
T Consensus 126 ~~~~~~~~~~~~~~~~~~G~~~~KlK-------v~~---------~~d~~~v~avr~~~----~~~~--l~vDaN~~w~~ 183 (321)
T PRK15129 126 VIGTPEQMANSASALWQAGAKLLKVK-------LDN---------HLISERMVAIRSAV----PDAT--LIVDANESWRA 183 (321)
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEEe-------CCC---------chHHHHHHHHHHhC----CCCe--EEEECCCCCCH
Confidence 45677778888888889999999992 221 11246777777653 2433 37788877888
Q ss_pred HHHHHHHHHhHhcCCcEEEecCC
Q 012478 240 EESLRRSRAFADAGADVLFIDAL 262 (462)
Q Consensus 240 deAI~RakAy~eAGAD~Ifie~~ 262 (462)
++|++.++++.+.+ .-|+|-+
T Consensus 184 ~~A~~~~~~l~~~~--i~~iEqP 204 (321)
T PRK15129 184 EGLAARCQLLADLG--VAMLEQP 204 (321)
T ss_pred HHHHHHHHHHHhcC--ceEEECC
Confidence 99999999998864 6688865
Done!