Query 012479
Match_columns 462
No_of_seqs 535 out of 1955
Neff 5.4
Searched_HMMs 46136
Date Fri Mar 29 03:04:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012479.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012479hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0059 IlvC Ketol-acid reduct 100.0 1.7E-84 3.6E-89 641.8 28.2 310 106-443 14-331 (338)
2 PRK05225 ketol-acid reductoiso 100.0 6.4E-80 1.4E-84 640.3 27.0 332 71-442 1-484 (487)
3 PRK13403 ketol-acid reductoiso 100.0 1.6E-78 3.5E-83 610.5 30.4 310 104-442 10-327 (335)
4 PRK05479 ketol-acid reductoiso 100.0 6.9E-73 1.5E-77 574.1 31.8 310 105-442 12-329 (330)
5 TIGR00465 ilvC ketol-acid redu 100.0 3E-69 6.5E-74 545.5 31.1 307 108-442 1-314 (314)
6 PF07991 IlvN: Acetohydroxy ac 100.0 1.2E-41 2.7E-46 313.0 14.9 160 108-287 2-162 (165)
7 PF01450 IlvC: Acetohydroxy ac 100.0 1.9E-38 4.1E-43 288.7 8.2 141 294-442 1-145 (145)
8 COG0345 ProC Pyrroline-5-carbo 100.0 9.3E-34 2E-38 280.4 22.2 218 111-365 1-229 (266)
9 PRK12491 pyrroline-5-carboxyla 100.0 2.3E-32 5E-37 271.4 22.4 219 112-366 3-233 (272)
10 PRK06928 pyrroline-5-carboxyla 100.0 2.3E-29 5.1E-34 249.9 21.0 219 111-365 1-233 (277)
11 PTZ00431 pyrroline carboxylate 100.0 1.6E-28 3.4E-33 241.8 21.8 213 112-366 4-226 (260)
12 PRK07679 pyrroline-5-carboxyla 100.0 1.5E-26 3.3E-31 229.4 24.5 219 112-365 4-234 (279)
13 PRK07634 pyrroline-5-carboxyla 99.9 1.5E-26 3.2E-31 223.6 22.2 220 112-366 5-234 (245)
14 KOG3124 Pyrroline-5-carboxylat 99.9 5E-27 1.1E-31 228.9 16.0 219 112-366 1-231 (267)
15 PLN02688 pyrroline-5-carboxyla 99.9 7.4E-26 1.6E-30 221.7 24.0 218 112-365 1-229 (266)
16 PRK11880 pyrroline-5-carboxyla 99.9 3.3E-25 7.1E-30 217.2 22.9 219 111-365 2-230 (267)
17 PRK07680 late competence prote 99.9 4.4E-25 9.4E-30 218.1 22.2 218 112-366 1-231 (273)
18 TIGR00112 proC pyrroline-5-car 99.9 1.3E-23 2.9E-28 205.4 19.4 195 142-365 11-212 (245)
19 PRK06476 pyrroline-5-carboxyla 99.9 8.6E-23 1.9E-27 200.1 21.3 215 112-366 1-223 (258)
20 PRK06545 prephenate dehydrogen 99.9 2.6E-20 5.7E-25 191.6 21.2 219 112-350 1-221 (359)
21 COG0287 TyrA Prephenate dehydr 99.8 6.2E-19 1.3E-23 176.4 21.4 195 112-329 4-201 (279)
22 PRK08655 prephenate dehydrogen 99.8 2.4E-17 5.2E-22 174.2 24.4 249 112-398 1-258 (437)
23 PRK07417 arogenate dehydrogena 99.8 1.1E-17 2.3E-22 166.3 19.5 191 112-324 1-192 (279)
24 PRK08507 prephenate dehydrogen 99.8 2.1E-17 4.5E-22 163.7 20.9 194 112-334 1-202 (275)
25 PRK07502 cyclohexadienyl dehyd 99.8 4.9E-17 1.1E-21 163.4 21.4 186 112-321 7-200 (307)
26 PLN02256 arogenate dehydrogena 99.7 2.4E-16 5.2E-21 159.5 18.9 167 109-300 35-210 (304)
27 PRK14806 bifunctional cyclohex 99.7 3.5E-16 7.6E-21 174.2 20.4 221 112-362 4-237 (735)
28 PF02153 PDH: Prephenate dehyd 99.7 2E-16 4.2E-21 156.1 16.1 192 126-335 1-194 (258)
29 PRK08818 prephenate dehydrogen 99.7 1.8E-15 3.9E-20 156.9 19.4 153 112-300 5-161 (370)
30 PRK12557 H(2)-dependent methyl 99.6 5.3E-14 1.1E-18 144.7 22.8 252 112-396 1-299 (342)
31 PRK11199 tyrA bifunctional cho 99.6 3.7E-14 8E-19 147.2 21.1 178 110-336 97-279 (374)
32 PLN02712 arogenate dehydrogena 99.6 2.7E-14 5.7E-19 158.2 20.2 194 107-330 366-564 (667)
33 PRK06130 3-hydroxybutyryl-CoA 99.6 6.5E-14 1.4E-18 140.7 21.0 217 111-361 4-244 (311)
34 TIGR01724 hmd_rel H2-forming N 99.6 4.4E-13 9.6E-18 135.9 24.5 226 112-364 1-262 (341)
35 PRK05225 ketol-acid reductoiso 99.6 4E-15 8.8E-20 156.5 9.3 104 318-431 233-342 (487)
36 PLN02712 arogenate dehydrogena 99.6 7.6E-14 1.6E-18 154.6 18.1 165 112-301 53-227 (667)
37 PRK05808 3-hydroxybutyryl-CoA 99.5 3.3E-13 7.1E-18 134.1 19.6 152 111-287 3-177 (282)
38 PRK07531 bifunctional 3-hydrox 99.5 3.3E-12 7.2E-17 137.1 19.9 192 111-339 4-218 (495)
39 PF03446 NAD_binding_2: NAD bi 99.4 5E-13 1.1E-17 123.0 10.9 149 111-286 1-155 (163)
40 COG2084 MmsB 3-hydroxyisobutyr 99.4 3E-12 6.6E-17 128.7 17.4 192 112-336 1-204 (286)
41 PLN02545 3-hydroxybutyryl-CoA 99.4 1.9E-12 4E-17 129.5 15.8 153 111-287 4-178 (295)
42 PF03807 F420_oxidored: NADP o 99.4 4.6E-13 1E-17 111.6 9.0 90 113-213 1-96 (96)
43 TIGR01915 npdG NADPH-dependent 99.4 4.4E-12 9.4E-17 122.0 15.2 156 112-287 1-183 (219)
44 PRK00094 gpsA NAD(P)H-dependen 99.4 1.3E-11 2.9E-16 123.6 17.5 149 111-286 1-172 (325)
45 PRK12490 6-phosphogluconate de 99.4 3.1E-11 6.7E-16 121.4 19.9 196 112-337 1-208 (299)
46 TIGR00872 gnd_rel 6-phosphoglu 99.4 7.3E-11 1.6E-15 118.7 21.2 147 112-286 1-153 (298)
47 PRK08293 3-hydroxybutyryl-CoA 99.4 1.5E-10 3.2E-15 115.7 23.2 213 111-363 3-248 (287)
48 PRK15461 NADH-dependent gamma- 99.4 4.7E-11 1E-15 120.0 19.7 197 111-337 1-205 (296)
49 PRK15059 tartronate semialdehy 99.3 5.3E-11 1.1E-15 119.8 18.7 194 112-336 1-202 (292)
50 TIGR01505 tartro_sem_red 2-hyd 99.3 1.3E-10 2.7E-15 116.0 19.0 190 113-336 1-202 (291)
51 PRK06035 3-hydroxyacyl-CoA deh 99.3 5.3E-11 1.1E-15 119.0 16.2 152 111-287 3-180 (291)
52 PRK09260 3-hydroxybutyryl-CoA 99.3 5.6E-11 1.2E-15 118.6 16.3 149 111-287 1-176 (288)
53 PRK06129 3-hydroxyacyl-CoA deh 99.3 3.4E-10 7.4E-15 114.2 20.3 193 111-337 2-218 (308)
54 PRK11559 garR tartronate semia 99.3 3.4E-10 7.3E-15 113.0 19.6 196 111-336 2-205 (296)
55 PRK07530 3-hydroxybutyryl-CoA 99.3 1.4E-10 2.9E-15 116.0 16.3 152 111-287 4-178 (292)
56 PLN02350 phosphogluconate dehy 99.3 3E-10 6.6E-15 122.1 19.5 152 111-286 6-167 (493)
57 PRK14618 NAD(P)H-dependent gly 99.3 7.4E-11 1.6E-15 119.7 13.9 150 112-287 5-172 (328)
58 TIGR01692 HIBADH 3-hydroxyisob 99.2 3.5E-10 7.6E-15 113.0 18.5 191 116-336 1-199 (288)
59 PRK12439 NAD(P)H-dependent gly 99.2 4.4E-10 9.6E-15 115.3 19.5 198 111-343 7-227 (341)
60 PF10727 Rossmann-like: Rossma 99.2 2E-11 4.4E-16 109.3 7.5 114 112-237 11-127 (127)
61 TIGR00873 gnd 6-phosphoglucona 99.2 4.2E-10 9.1E-15 120.4 18.6 147 113-287 1-159 (467)
62 PTZ00142 6-phosphogluconate de 99.2 9.1E-10 2E-14 117.9 20.2 151 111-287 1-162 (470)
63 PRK09599 6-phosphogluconate de 99.2 8.3E-10 1.8E-14 111.1 18.8 195 112-336 1-208 (301)
64 COG2085 Predicted dinucleotide 99.2 4.7E-10 1E-14 108.0 14.7 155 111-287 1-174 (211)
65 PRK06444 prephenate dehydrogen 99.2 3.9E-10 8.6E-15 107.9 12.9 126 112-301 1-128 (197)
66 TIGR03026 NDP-sugDHase nucleot 99.1 4.6E-09 1E-13 110.2 20.2 200 112-336 1-241 (411)
67 KOG2380 Prephenate dehydrogena 99.1 8.6E-10 1.9E-14 112.3 13.8 164 112-300 53-226 (480)
68 PRK08268 3-hydroxy-acyl-CoA de 99.1 2.6E-09 5.7E-14 115.3 18.2 150 109-287 5-181 (507)
69 PRK07066 3-hydroxybutyryl-CoA 99.1 1.8E-09 3.8E-14 110.5 15.6 153 111-287 7-178 (321)
70 PRK14619 NAD(P)H-dependent gly 99.1 4.4E-09 9.5E-14 106.2 16.0 79 109-212 3-82 (308)
71 PLN02858 fructose-bisphosphate 99.0 7.6E-09 1.6E-13 122.9 19.6 199 111-337 324-531 (1378)
72 PRK07819 3-hydroxybutyryl-CoA 99.0 1.4E-08 3E-13 102.1 18.0 216 111-363 5-249 (286)
73 PRK11064 wecC UDP-N-acetyl-D-m 99.0 3.9E-08 8.4E-13 103.8 21.5 202 111-336 3-245 (415)
74 PTZ00345 glycerol-3-phosphate 99.0 3.5E-08 7.7E-13 102.7 20.6 256 110-400 10-315 (365)
75 PRK06522 2-dehydropantoate 2-r 99.0 2.5E-08 5.3E-13 99.0 17.9 153 112-287 1-168 (304)
76 TIGR02279 PaaC-3OHAcCoADH 3-hy 99.0 2.7E-08 5.9E-13 107.5 19.5 153 110-287 4-179 (503)
77 PRK14620 NAD(P)H-dependent gly 99.0 6E-08 1.3E-12 98.4 20.7 97 112-215 1-110 (326)
78 PRK13243 glyoxylate reductase; 99.0 1.9E-09 4.1E-14 110.6 9.7 148 94-268 126-290 (333)
79 PF02826 2-Hacid_dh_C: D-isome 99.0 1.2E-09 2.6E-14 102.1 7.3 107 94-213 18-129 (178)
80 COG0111 SerA Phosphoglycerate 99.0 4.9E-09 1.1E-13 107.4 12.3 154 94-272 125-289 (324)
81 PLN02858 fructose-bisphosphate 99.0 2.2E-08 4.7E-13 119.1 19.4 197 112-337 5-211 (1378)
82 PF01210 NAD_Gly3P_dh_N: NAD-d 99.0 2.9E-09 6.3E-14 97.6 9.3 95 113-214 1-106 (157)
83 PRK07574 formate dehydrogenase 98.9 4.9E-09 1.1E-13 109.7 10.7 159 94-276 173-344 (385)
84 PRK06436 glycerate dehydrogena 98.9 6.6E-09 1.4E-13 105.5 11.2 150 94-276 107-267 (303)
85 COG4007 Predicted dehydrogenas 98.9 1.9E-07 4.2E-12 92.4 20.9 227 111-363 1-262 (340)
86 PLN03139 formate dehydrogenase 98.9 5.4E-09 1.2E-13 109.4 10.7 158 94-275 180-350 (386)
87 TIGR03376 glycerol3P_DH glycer 98.9 2.2E-07 4.8E-12 96.0 21.4 171 113-315 1-206 (342)
88 PF02737 3HCDH_N: 3-hydroxyacy 98.9 5.5E-08 1.2E-12 91.5 15.3 150 113-287 1-173 (180)
89 PRK12921 2-dehydropantoate 2-r 98.9 1.3E-07 2.9E-12 94.1 18.9 154 112-287 1-171 (305)
90 COG1052 LdhA Lactate dehydroge 98.9 2E-08 4.4E-13 102.9 13.1 162 91-275 122-298 (324)
91 PRK15409 bifunctional glyoxyla 98.9 2.1E-08 4.5E-13 102.7 13.0 158 92-275 123-295 (323)
92 PRK11861 bifunctional prephena 98.9 1.7E-08 3.6E-13 112.5 13.0 135 182-324 1-136 (673)
93 PRK12480 D-lactate dehydrogena 98.9 1.2E-08 2.6E-13 104.6 10.8 94 105-214 141-237 (330)
94 COG0240 GpsA Glycerol-3-phosph 98.8 2.6E-07 5.5E-12 94.7 19.8 201 111-344 1-222 (329)
95 PRK08410 2-hydroxyacid dehydro 98.8 2.1E-08 4.5E-13 102.1 11.6 157 94-277 122-295 (311)
96 PRK08605 D-lactate dehydrogena 98.8 1E-08 2.2E-13 105.1 9.4 95 105-214 141-239 (332)
97 PRK08229 2-dehydropantoate 2-r 98.8 8.8E-08 1.9E-12 97.2 15.9 97 111-215 2-111 (341)
98 TIGR01327 PGDH D-3-phosphoglyc 98.8 1E-08 2.3E-13 111.1 9.4 107 93-212 120-229 (525)
99 PLN02928 oxidoreductase family 98.8 3.3E-08 7.1E-13 102.2 12.1 161 94-276 144-322 (347)
100 PRK15469 ghrA bifunctional gly 98.8 1.4E-08 3.1E-13 103.4 9.3 148 94-268 121-277 (312)
101 PRK13581 D-3-phosphoglycerate 98.8 1.8E-08 3.9E-13 109.3 9.2 105 94-212 123-230 (526)
102 PRK06932 glycerate dehydrogena 98.7 7.7E-08 1.7E-12 98.1 12.3 159 94-278 124-299 (314)
103 KOG0409 Predicted dehydrogenas 98.7 2.7E-08 5.9E-13 100.3 8.1 149 112-287 36-192 (327)
104 PRK11730 fadB multifunctional 98.7 2.2E-06 4.7E-11 96.5 22.7 215 109-361 311-552 (715)
105 TIGR02441 fa_ox_alpha_mit fatt 98.7 6.7E-07 1.5E-11 100.8 18.2 212 109-360 333-572 (737)
106 TIGR02437 FadB fatty oxidation 98.7 8.7E-07 1.9E-11 99.6 18.9 215 109-360 311-551 (714)
107 PF14748 P5CR_dimer: Pyrroline 98.7 6.6E-08 1.4E-12 84.0 7.8 66 299-365 2-73 (107)
108 KOG0069 Glyoxylate/hydroxypyru 98.6 1E-07 2.2E-12 97.9 9.7 138 86-238 136-285 (336)
109 PRK15182 Vi polysaccharide bio 98.6 1.5E-06 3.2E-11 92.3 18.7 201 112-336 7-241 (425)
110 cd01065 NAD_bind_Shikimate_DH 98.6 3.2E-08 7E-13 88.9 5.2 123 108-240 17-143 (155)
111 PRK11790 D-3-phosphoglycerate 98.6 7.4E-08 1.6E-12 101.6 8.6 149 94-267 134-293 (409)
112 TIGR02440 FadJ fatty oxidation 98.6 2.4E-06 5.3E-11 95.8 20.9 214 110-361 303-543 (699)
113 PRK06487 glycerate dehydrogena 98.6 8.2E-08 1.8E-12 98.0 8.3 156 93-277 124-296 (317)
114 COG1250 FadB 3-hydroxyacyl-CoA 98.6 1.7E-06 3.6E-11 88.3 17.7 152 111-287 3-177 (307)
115 TIGR01723 hmd_TIGR 5,10-methen 98.6 3.4E-06 7.4E-11 84.4 19.1 199 159-390 124-333 (340)
116 PRK00961 H(2)-dependent methyl 98.6 3E-06 6.6E-11 84.7 18.6 176 158-364 125-311 (342)
117 PRK11154 fadJ multifunctional 98.6 2.3E-06 5E-11 96.1 19.1 214 109-361 307-548 (708)
118 PRK06249 2-dehydropantoate 2-r 98.6 3.2E-06 7E-11 85.6 18.3 153 112-287 6-180 (313)
119 KOG0068 D-3-phosphoglycerate d 98.6 7.6E-07 1.7E-11 91.1 12.8 160 88-271 123-292 (406)
120 PRK09287 6-phosphogluconate de 98.5 3.4E-06 7.4E-11 90.4 18.3 139 122-287 1-150 (459)
121 PRK15057 UDP-glucose 6-dehydro 98.5 5.6E-06 1.2E-10 86.9 17.1 195 112-336 1-230 (388)
122 PRK15438 erythronate-4-phospha 98.5 3.8E-07 8.2E-12 95.4 8.0 150 106-286 112-280 (378)
123 PF00670 AdoHcyase_NAD: S-aden 98.4 8.2E-07 1.8E-11 82.8 8.5 95 106-215 19-113 (162)
124 PRK00257 erythronate-4-phospha 98.4 5E-07 1.1E-11 94.7 7.6 139 106-275 112-264 (381)
125 PLN02306 hydroxypyruvate reduc 98.4 9.4E-07 2E-11 92.8 9.5 150 106-275 161-330 (386)
126 COG1023 Gnd Predicted 6-phosph 98.4 6.6E-06 1.4E-10 81.1 14.2 146 112-286 1-154 (300)
127 TIGR02853 spore_dpaA dipicolin 98.4 1.1E-06 2.5E-11 88.6 9.2 95 106-213 147-241 (287)
128 PTZ00075 Adenosylhomocysteinas 98.3 1.8E-06 4E-11 92.5 9.9 120 106-243 250-371 (476)
129 PLN02353 probable UDP-glucose 98.3 2.3E-05 5.1E-10 84.4 18.0 200 111-335 1-248 (473)
130 PRK13304 L-aspartate dehydroge 98.3 4.2E-06 9.1E-11 83.3 10.0 92 111-213 1-94 (265)
131 PF03721 UDPG_MGDP_dh_N: UDP-g 98.2 3.4E-06 7.4E-11 79.9 8.4 93 112-212 1-120 (185)
132 TIGR00936 ahcY adenosylhomocys 98.2 6E-06 1.3E-10 87.3 10.9 93 107-215 192-285 (406)
133 COG1893 ApbA Ketopantoate redu 98.2 6.4E-05 1.4E-09 76.7 17.1 154 112-287 1-170 (307)
134 COG4074 Mth H2-forming N5,N10- 98.2 0.00014 3E-09 71.2 18.2 199 158-388 123-331 (343)
135 PRK13302 putative L-aspartate 98.2 8.7E-06 1.9E-10 81.5 10.1 92 112-213 7-100 (271)
136 PRK08306 dipicolinate synthase 98.2 8.9E-06 1.9E-10 82.4 10.1 94 106-212 148-241 (296)
137 PRK05476 S-adenosyl-L-homocyst 98.2 1E-05 2.2E-10 86.0 10.7 93 107-215 209-302 (425)
138 COG0362 Gnd 6-phosphogluconate 98.2 2.5E-05 5.3E-10 81.7 13.1 182 112-334 4-215 (473)
139 PRK14194 bifunctional 5,10-met 98.1 7.8E-06 1.7E-10 83.2 8.4 76 106-212 155-231 (301)
140 PRK08269 3-hydroxybutyryl-CoA 98.1 0.00036 7.8E-09 71.4 20.2 207 122-362 1-244 (314)
141 PLN02494 adenosylhomocysteinas 98.1 1.5E-05 3.2E-10 85.6 10.4 92 107-214 251-343 (477)
142 PF01408 GFO_IDH_MocA: Oxidore 98.1 2.6E-05 5.5E-10 67.0 10.1 81 112-200 1-84 (120)
143 cd00401 AdoHcyase S-adenosyl-L 98.1 2.2E-05 4.7E-10 83.2 11.1 93 106-214 198-291 (413)
144 PF02558 ApbA: Ketopantoate re 98.0 2.4E-05 5.2E-10 70.1 8.6 94 114-215 1-105 (151)
145 cd05213 NAD_bind_Glutamyl_tRNA 98.0 2.3E-05 5E-10 79.7 9.5 96 108-212 176-273 (311)
146 smart00859 Semialdhyde_dh Semi 97.9 3.6E-05 7.8E-10 67.2 7.9 97 113-214 1-101 (122)
147 PRK06141 ornithine cyclodeamin 97.9 2.7E-05 5.8E-10 79.4 7.6 87 112-211 126-218 (314)
148 TIGR02371 ala_DH_arch alanine 97.9 4.4E-05 9.5E-10 78.3 8.4 96 110-215 127-225 (325)
149 PRK05708 2-dehydropantoate 2-r 97.8 8.4E-05 1.8E-09 75.3 9.8 122 112-243 3-139 (305)
150 PRK14188 bifunctional 5,10-met 97.8 4.9E-05 1.1E-09 77.3 8.1 75 107-212 155-230 (296)
151 PF01488 Shikimate_DH: Shikima 97.8 4.4E-05 9.5E-10 68.5 5.9 97 106-212 8-109 (135)
152 cd01075 NAD_bind_Leu_Phe_Val_D 97.8 6.4E-05 1.4E-09 72.0 7.4 71 105-187 23-94 (200)
153 PRK00045 hemA glutamyl-tRNA re 97.7 7.8E-05 1.7E-09 79.0 7.1 74 107-189 179-253 (423)
154 COG0677 WecC UDP-N-acetyl-D-ma 97.7 0.00081 1.8E-08 70.7 13.8 151 112-287 10-201 (436)
155 PRK14179 bifunctional 5,10-met 97.6 0.00014 3E-09 73.7 8.0 76 106-212 154-230 (284)
156 COG5495 Uncharacterized conser 97.6 0.00076 1.7E-08 66.4 12.3 213 112-355 11-228 (289)
157 PRK07340 ornithine cyclodeamin 97.6 0.00016 3.5E-09 73.5 8.0 91 112-215 126-220 (304)
158 PRK13303 L-aspartate dehydroge 97.6 0.00041 9E-09 69.2 10.2 91 111-213 1-94 (265)
159 COG2423 Predicted ornithine cy 97.6 0.00025 5.4E-09 73.3 8.6 95 110-214 129-227 (330)
160 PRK00048 dihydrodipicolinate r 97.5 0.00042 9.2E-09 68.7 9.4 96 111-218 1-98 (257)
161 TIGR01035 hemA glutamyl-tRNA r 97.5 0.00019 4.1E-09 76.0 6.9 75 107-190 177-252 (417)
162 PRK07589 ornithine cyclodeamin 97.5 0.00027 5.8E-09 73.5 7.4 98 110-216 128-229 (346)
163 KOG2711 Glycerol-3-phosphate d 97.5 0.014 3E-07 60.5 19.5 105 112-216 22-144 (372)
164 PRK06407 ornithine cyclodeamin 97.5 0.00028 6.2E-09 71.8 7.3 95 111-216 117-216 (301)
165 PRK08618 ornithine cyclodeamin 97.4 0.00043 9.4E-09 70.9 8.5 92 112-215 128-224 (325)
166 PRK06046 alanine dehydrogenase 97.4 0.00034 7.5E-09 71.7 7.7 93 111-215 129-226 (326)
167 PRK06223 malate dehydrogenase; 97.4 0.00099 2.1E-08 67.2 10.8 69 111-186 2-78 (307)
168 PLN00203 glutamyl-tRNA reducta 97.4 0.00063 1.4E-08 74.2 9.4 85 108-199 264-353 (519)
169 TIGR02992 ectoine_eutC ectoine 97.4 0.00042 9.1E-09 71.1 7.5 91 112-213 130-225 (326)
170 TIGR00036 dapB dihydrodipicoli 97.4 0.0014 3.1E-08 65.5 10.8 95 111-217 1-105 (266)
171 KOG2304 3-hydroxyacyl-CoA dehy 97.3 0.00081 1.8E-08 66.2 8.5 153 111-287 11-191 (298)
172 TIGR01921 DAP-DH diaminopimela 97.3 0.00052 1.1E-08 70.7 7.6 85 112-209 4-88 (324)
173 PF02423 OCD_Mu_crystall: Orni 97.3 0.00023 5E-09 72.7 4.7 96 111-215 128-227 (313)
174 PF01118 Semialdhyde_dh: Semia 97.3 0.00062 1.3E-08 59.7 6.8 92 113-214 1-99 (121)
175 cd01078 NAD_bind_H4MPT_DH NADP 97.3 0.00051 1.1E-08 64.7 6.6 97 107-212 25-129 (194)
176 PRK06823 ornithine cyclodeamin 97.3 0.00062 1.3E-08 69.8 7.7 95 110-215 127-225 (315)
177 PRK12549 shikimate 5-dehydroge 97.3 0.00062 1.3E-08 68.7 7.4 75 107-190 124-204 (284)
178 PF01113 DapB_N: Dihydrodipico 97.3 0.00087 1.9E-08 59.4 7.4 93 112-216 1-103 (124)
179 PRK04207 glyceraldehyde-3-phos 97.3 0.0013 2.8E-08 68.2 9.6 96 111-214 1-111 (341)
180 TIGR01763 MalateDH_bact malate 97.2 0.0021 4.4E-08 65.6 10.3 66 112-187 2-78 (305)
181 PRK13940 glutamyl-tRNA reducta 97.2 0.0006 1.3E-08 72.4 6.5 74 106-188 177-252 (414)
182 TIGR00518 alaDH alanine dehydr 97.2 0.00092 2E-08 69.9 7.8 98 108-212 165-267 (370)
183 TIGR03215 ac_ald_DH_ac acetald 97.2 0.0024 5.1E-08 64.8 10.5 91 112-213 2-96 (285)
184 COG0673 MviM Predicted dehydro 97.2 0.0012 2.5E-08 66.5 8.3 85 112-208 4-94 (342)
185 PRK08300 acetaldehyde dehydrog 97.2 0.0021 4.6E-08 65.7 9.9 92 112-214 5-103 (302)
186 COG1712 Predicted dinucleotide 97.1 0.0025 5.4E-08 62.7 9.5 92 112-214 1-94 (255)
187 COG0499 SAM1 S-adenosylhomocys 97.1 0.00086 1.9E-08 69.7 6.5 94 106-215 205-299 (420)
188 cd01080 NAD_bind_m-THF_DH_Cycl 97.1 0.0012 2.7E-08 61.9 7.0 76 106-212 40-116 (168)
189 COG0373 HemA Glutamyl-tRNA red 97.1 0.0009 2E-08 71.0 6.7 73 106-187 174-247 (414)
190 KOG2305 3-hydroxyacyl-CoA dehy 97.1 0.014 3E-07 57.8 14.3 206 112-343 4-239 (313)
191 PRK06199 ornithine cyclodeamin 97.1 0.001 2.2E-08 69.9 6.9 93 109-211 153-258 (379)
192 TIGR00507 aroE shikimate 5-deh 97.1 0.00083 1.8E-08 66.8 5.9 93 108-211 115-213 (270)
193 TIGR00745 apbA_panE 2-dehydrop 97.0 0.015 3.2E-07 57.4 14.1 86 121-215 1-97 (293)
194 PRK00258 aroE shikimate 5-dehy 97.0 0.001 2.2E-08 66.6 5.9 77 107-191 120-198 (278)
195 PF13380 CoA_binding_2: CoA bi 97.0 0.0039 8.4E-08 54.8 8.6 86 112-214 1-90 (116)
196 cd05291 HicDH_like L-2-hydroxy 97.0 0.0042 9.1E-08 63.0 9.8 67 112-188 1-78 (306)
197 cd05311 NAD_bind_2_malic_enz N 97.0 0.0036 7.8E-08 61.2 9.0 94 106-212 21-128 (226)
198 KOG2653 6-phosphogluconate deh 96.9 0.0012 2.6E-08 68.6 5.5 93 112-212 7-105 (487)
199 PRK00436 argC N-acetyl-gamma-g 96.9 0.0038 8.3E-08 64.6 9.4 95 111-213 2-100 (343)
200 COG1004 Ugd Predicted UDP-gluc 96.9 0.0036 7.9E-08 65.9 9.2 90 112-209 1-117 (414)
201 PTZ00117 malate dehydrogenase; 96.9 0.0054 1.2E-07 62.9 9.8 69 108-186 3-81 (319)
202 PRK08291 ectoine utilization p 96.9 0.0024 5.3E-08 65.5 7.3 90 112-212 133-227 (330)
203 COG1748 LYS9 Saccharopine dehy 96.9 0.0034 7.3E-08 66.3 8.2 80 111-197 1-87 (389)
204 PF00056 Ldh_1_N: lactate/mala 96.8 0.0058 1.3E-07 55.4 8.6 68 112-187 1-78 (141)
205 PRK14175 bifunctional 5,10-met 96.8 0.003 6.5E-08 64.2 7.3 76 106-212 154-230 (286)
206 PRK14189 bifunctional 5,10-met 96.8 0.0026 5.6E-08 64.6 6.8 76 106-212 154-230 (285)
207 PF02629 CoA_binding: CoA bind 96.8 0.0031 6.7E-08 53.4 6.0 89 112-212 4-95 (96)
208 PRK09310 aroDE bifunctional 3- 96.8 0.003 6.4E-08 68.3 7.4 74 107-190 329-402 (477)
209 PF02254 TrkA_N: TrkA-N domain 96.8 0.016 3.4E-07 49.6 10.5 94 114-214 1-99 (116)
210 cd05292 LDH_2 A subgroup of L- 96.7 0.0075 1.6E-07 61.5 9.6 70 112-188 1-77 (308)
211 PTZ00082 L-lactate dehydrogena 96.7 0.008 1.7E-07 61.8 9.7 69 108-186 4-82 (321)
212 COG0569 TrkA K+ transport syst 96.7 0.011 2.3E-07 57.8 9.7 82 112-199 1-87 (225)
213 PRK09496 trkA potassium transp 96.7 0.0099 2.2E-07 62.6 10.2 79 112-197 1-84 (453)
214 PRK06718 precorrin-2 dehydroge 96.7 0.0089 1.9E-07 57.5 9.0 85 106-199 6-91 (202)
215 PRK10206 putative oxidoreducta 96.7 0.0064 1.4E-07 62.7 8.5 81 112-199 2-85 (344)
216 PRK11579 putative oxidoreducta 96.7 0.0082 1.8E-07 61.6 9.3 83 112-208 5-91 (346)
217 cd05191 NAD_bind_amino_acid_DH 96.6 0.0085 1.8E-07 49.5 7.5 66 106-211 19-85 (86)
218 PRK13301 putative L-aspartate 96.6 0.012 2.5E-07 59.3 9.7 92 112-214 3-96 (267)
219 PRK05678 succinyl-CoA syntheta 96.6 0.013 2.8E-07 59.7 10.3 92 112-217 9-103 (291)
220 COG2344 AT-rich DNA-binding pr 96.6 0.0092 2E-07 57.3 8.2 104 111-234 84-192 (211)
221 COG0169 AroE Shikimate 5-dehyd 96.6 0.0068 1.5E-07 61.5 7.6 97 106-211 122-225 (283)
222 PRK14192 bifunctional 5,10-met 96.5 0.0063 1.4E-07 61.7 7.3 76 106-212 155-231 (283)
223 TIGR01850 argC N-acetyl-gamma- 96.5 0.011 2.4E-07 61.3 9.3 95 112-214 1-101 (346)
224 TIGR01809 Shik-DH-AROM shikima 96.5 0.0053 1.1E-07 61.8 6.6 77 107-190 122-202 (282)
225 cd01339 LDH-like_MDH L-lactate 96.5 0.011 2.4E-07 59.7 9.0 64 114-186 1-74 (300)
226 COG0686 Ald Alanine dehydrogen 96.4 0.0099 2.1E-07 61.1 7.4 95 112-212 169-268 (371)
227 PRK04148 hypothetical protein; 96.4 0.037 7.9E-07 50.4 10.4 94 109-211 16-110 (134)
228 TIGR01019 sucCoAalpha succinyl 96.4 0.022 4.7E-07 57.9 9.9 91 112-216 7-100 (286)
229 KOG1370 S-adenosylhomocysteine 96.3 0.014 3.1E-07 59.8 8.3 137 60-215 168-304 (434)
230 TIGR00561 pntA NAD(P) transhyd 96.3 0.015 3.3E-07 63.5 9.0 94 112-212 165-284 (511)
231 PRK00066 ldh L-lactate dehydro 96.3 0.027 5.8E-07 57.8 10.2 66 112-187 7-82 (315)
232 PF13460 NAD_binding_10: NADH( 96.2 0.041 8.9E-07 50.2 10.1 66 114-188 1-70 (183)
233 PLN02819 lysine-ketoglutarate 96.2 0.011 2.4E-07 69.4 7.4 86 109-197 567-667 (1042)
234 PRK10792 bifunctional 5,10-met 96.1 0.018 4E-07 58.5 8.0 76 106-212 155-231 (285)
235 cd05212 NAD_bind_m-THF_DH_Cycl 96.1 0.019 4.2E-07 52.4 7.4 75 106-211 24-99 (140)
236 cd05297 GH4_alpha_glucosidase_ 96.1 0.01 2.2E-07 63.2 6.4 82 112-196 1-92 (423)
237 PRK06719 precorrin-2 dehydroge 96.1 0.02 4.3E-07 53.0 7.4 88 101-200 5-92 (157)
238 PRK14982 acyl-ACP reductase; P 96.1 0.013 2.8E-07 61.0 6.6 94 106-212 151-246 (340)
239 PRK05472 redox-sensing transcr 96.0 0.0095 2.1E-07 57.4 5.0 81 112-199 85-167 (213)
240 TIGR02717 AcCoA-syn-alpha acet 95.9 0.036 7.8E-07 59.5 9.6 87 112-215 8-100 (447)
241 PF05368 NmrA: NmrA-like famil 95.9 0.053 1.1E-06 51.8 9.7 69 114-188 1-74 (233)
242 PTZ00187 succinyl-CoA syntheta 95.9 0.046 9.9E-07 56.4 9.8 115 112-243 30-152 (317)
243 PF13241 NAD_binding_7: Putati 95.9 0.037 8E-07 47.4 7.7 75 107-196 4-78 (103)
244 PRK09424 pntA NAD(P) transhydr 95.8 0.031 6.6E-07 61.1 8.6 97 108-212 163-285 (509)
245 cd00650 LDH_MDH_like NAD-depen 95.8 0.045 9.7E-07 54.2 9.2 65 114-186 1-78 (263)
246 cd01079 NAD_bind_m-THF_DH NAD 95.8 0.024 5.2E-07 54.7 6.7 93 106-213 58-157 (197)
247 PF02882 THF_DHG_CYH_C: Tetrah 95.8 0.042 9E-07 51.4 8.0 77 106-213 32-109 (160)
248 PRK03659 glutathione-regulated 95.6 0.057 1.2E-06 60.0 10.0 75 112-193 401-479 (601)
249 TIGR02356 adenyl_thiF thiazole 95.6 0.047 1E-06 52.3 8.1 36 106-148 17-53 (202)
250 cd05211 NAD_bind_Glu_Leu_Phe_V 95.6 0.036 7.7E-07 54.1 7.3 77 106-189 19-108 (217)
251 TIGR01470 cysG_Nterm siroheme 95.6 0.092 2E-06 50.7 9.9 83 107-198 6-90 (205)
252 PF03435 Saccharop_dh: Sacchar 95.6 0.04 8.7E-07 57.2 8.0 78 114-197 1-86 (386)
253 PRK10669 putative cation:proto 95.5 0.07 1.5E-06 58.6 10.1 74 112-192 418-495 (558)
254 TIGR01546 GAPDH-II_archae glyc 95.5 0.056 1.2E-06 56.1 8.8 77 114-195 1-92 (333)
255 PRK14191 bifunctional 5,10-met 95.5 0.033 7.1E-07 56.7 6.9 76 106-212 153-229 (285)
256 PRK09496 trkA potassium transp 95.5 0.1 2.2E-06 55.0 11.0 93 112-211 232-330 (453)
257 PRK00683 murD UDP-N-acetylmura 95.5 0.038 8.2E-07 58.3 7.7 67 112-189 4-70 (418)
258 PRK14178 bifunctional 5,10-met 95.5 0.042 9.1E-07 55.8 7.5 76 106-212 148-224 (279)
259 cd05293 LDH_1 A subgroup of L- 95.4 0.051 1.1E-06 55.8 7.9 68 112-186 4-79 (312)
260 PRK05442 malate dehydrogenase; 95.3 0.14 3.1E-06 52.9 11.0 69 109-187 2-89 (326)
261 TIGR02354 thiF_fam2 thiamine b 95.3 0.11 2.3E-06 50.1 9.2 102 105-214 16-146 (200)
262 PRK03562 glutathione-regulated 95.3 0.091 2E-06 58.7 9.9 75 112-193 401-479 (621)
263 PRK12548 shikimate 5-dehydroge 95.2 0.049 1.1E-06 55.0 7.0 78 107-191 123-212 (289)
264 PTZ00325 malate dehydrogenase; 95.2 0.035 7.5E-07 57.3 5.8 76 105-187 3-85 (321)
265 PF10728 DUF2520: Domain of un 95.1 0.24 5.1E-06 44.8 10.4 93 263-365 4-97 (132)
266 PF01262 AlaDh_PNT_C: Alanine 95.1 0.029 6.2E-07 52.0 4.6 100 105-212 15-139 (168)
267 PLN02602 lactate dehydrogenase 95.0 0.17 3.6E-06 52.9 10.5 68 112-186 38-113 (350)
268 PRK12475 thiamine/molybdopteri 95.0 0.14 3E-06 53.2 9.8 88 105-199 19-137 (338)
269 TIGR01761 thiaz-red thiazoliny 95.0 0.11 2.3E-06 54.3 8.9 86 112-209 4-94 (343)
270 PRK00421 murC UDP-N-acetylmura 94.9 0.077 1.7E-06 56.7 7.9 71 105-185 2-73 (461)
271 cd01076 NAD_bind_1_Glu_DH NAD( 94.9 0.06 1.3E-06 52.8 6.5 32 106-144 27-58 (227)
272 cd01338 MDH_choloroplast_like 94.9 0.081 1.8E-06 54.5 7.7 66 112-187 3-87 (322)
273 PRK12749 quinate/shikimate deh 94.9 0.081 1.8E-06 53.7 7.5 78 107-191 121-209 (288)
274 PRK14183 bifunctional 5,10-met 94.9 0.084 1.8E-06 53.7 7.5 76 106-212 153-229 (281)
275 PLN00112 malate dehydrogenase 94.8 0.26 5.7E-06 53.1 11.5 71 112-187 101-185 (444)
276 PRK06270 homoserine dehydrogen 94.8 0.12 2.5E-06 53.7 8.6 99 112-210 3-123 (341)
277 COG1064 AdhP Zn-dependent alco 94.7 0.2 4.3E-06 52.2 10.0 92 108-211 165-258 (339)
278 PRK14176 bifunctional 5,10-met 94.7 0.12 2.7E-06 52.6 8.3 76 106-212 160-236 (287)
279 cd00300 LDH_like L-lactate deh 94.7 0.12 2.6E-06 52.5 8.2 68 114-187 1-75 (300)
280 TIGR01759 MalateDH-SF1 malate 94.6 0.26 5.6E-06 50.9 10.6 70 112-187 4-88 (323)
281 PRK14173 bifunctional 5,10-met 94.6 0.11 2.4E-06 53.0 7.5 76 106-212 151-227 (287)
282 cd05294 LDH-like_MDH_nadp A la 94.6 0.17 3.6E-06 51.8 8.9 67 112-187 1-81 (309)
283 COG1063 Tdh Threonine dehydrog 94.5 0.19 4.1E-06 52.0 9.5 91 112-211 170-268 (350)
284 PRK14186 bifunctional 5,10-met 94.5 0.11 2.5E-06 53.1 7.5 76 106-212 154-230 (297)
285 PRK14172 bifunctional 5,10-met 94.5 0.12 2.6E-06 52.5 7.5 76 106-212 154-230 (278)
286 PLN02516 methylenetetrahydrofo 94.4 0.11 2.4E-06 53.2 7.3 76 106-212 163-239 (299)
287 PRK14169 bifunctional 5,10-met 94.4 0.13 2.8E-06 52.4 7.5 76 106-212 152-228 (282)
288 PF03720 UDPG_MGDP_dh_C: UDP-g 94.4 0.17 3.7E-06 43.5 7.3 83 121-214 17-103 (106)
289 PRK14177 bifunctional 5,10-met 94.3 0.13 2.9E-06 52.3 7.6 76 106-212 155-231 (284)
290 cd05290 LDH_3 A subgroup of L- 94.3 0.11 2.4E-06 53.3 7.0 69 113-187 1-77 (307)
291 PRK14170 bifunctional 5,10-met 94.3 0.13 2.8E-06 52.4 7.5 76 106-212 153-229 (284)
292 PRK14171 bifunctional 5,10-met 94.3 0.1 2.2E-06 53.2 6.7 75 107-212 156-231 (288)
293 PRK14190 bifunctional 5,10-met 94.3 0.14 2.9E-06 52.2 7.5 76 106-212 154-230 (284)
294 PF03059 NAS: Nicotianamine sy 94.3 0.34 7.3E-06 49.2 10.2 98 112-215 122-235 (276)
295 PRK00141 murD UDP-N-acetylmura 94.3 0.12 2.6E-06 55.6 7.5 70 106-185 11-81 (473)
296 cd01336 MDH_cytoplasmic_cytoso 94.2 0.16 3.5E-06 52.3 8.0 75 112-186 3-86 (325)
297 cd08230 glucose_DH Glucose deh 94.1 0.47 1E-05 48.3 11.1 93 109-211 172-268 (355)
298 PRK01438 murD UDP-N-acetylmura 94.1 0.15 3.2E-06 54.6 7.7 70 107-186 13-86 (480)
299 PF00185 OTCace: Aspartate/orn 94.1 0.36 7.9E-06 44.6 9.3 69 109-188 1-83 (158)
300 PRK01710 murD UDP-N-acetylmura 94.0 0.12 2.7E-06 55.2 7.0 71 106-185 10-84 (458)
301 PF00899 ThiF: ThiF family; I 94.0 0.13 2.9E-06 45.6 6.1 30 112-147 3-33 (135)
302 PRK14180 bifunctional 5,10-met 94.0 0.17 3.6E-06 51.6 7.5 76 106-212 154-230 (282)
303 COG0190 FolD 5,10-methylene-te 94.0 0.16 3.5E-06 51.6 7.3 76 106-212 152-228 (283)
304 PRK00676 hemA glutamyl-tRNA re 94.0 0.15 3.2E-06 53.2 7.2 64 106-186 170-234 (338)
305 PRK14182 bifunctional 5,10-met 93.9 0.16 3.4E-06 51.8 7.1 76 106-212 153-229 (282)
306 PRK14166 bifunctional 5,10-met 93.9 0.18 3.9E-06 51.3 7.4 76 106-212 153-229 (282)
307 PRK14106 murD UDP-N-acetylmura 93.8 0.2 4.3E-06 53.0 8.0 71 108-187 3-77 (450)
308 PRK14027 quinate/shikimate deh 93.8 0.13 2.8E-06 52.2 6.3 77 107-190 124-206 (283)
309 cd00757 ThiF_MoeB_HesA_family 93.8 0.16 3.4E-06 49.5 6.6 28 105-133 16-43 (228)
310 PRK14187 bifunctional 5,10-met 93.7 0.19 4.2E-06 51.3 7.4 76 106-212 156-232 (294)
311 PRK14174 bifunctional 5,10-met 93.6 0.2 4.4E-06 51.3 7.2 80 106-212 155-235 (295)
312 PLN02616 tetrahydrofolate dehy 93.6 0.19 4.1E-06 52.8 7.1 76 106-212 227-303 (364)
313 cd01492 Aos1_SUMO Ubiquitin ac 93.5 0.3 6.5E-06 46.8 8.0 36 105-147 16-52 (197)
314 PRK01390 murD UDP-N-acetylmura 93.5 0.2 4.3E-06 53.4 7.3 66 107-184 6-71 (460)
315 PRK14193 bifunctional 5,10-met 93.5 0.23 5E-06 50.6 7.4 76 106-212 154-232 (284)
316 TIGR03366 HpnZ_proposed putati 93.5 0.55 1.2E-05 46.3 10.0 88 109-211 120-217 (280)
317 cd01485 E1-1_like Ubiquitin ac 93.5 0.33 7.2E-06 46.4 8.1 36 105-147 14-50 (198)
318 TIGR01758 MDH_euk_cyt malate d 93.4 0.21 4.5E-06 51.6 7.1 69 113-187 1-84 (324)
319 PLN02897 tetrahydrofolate dehy 93.4 0.22 4.7E-06 52.0 7.2 76 106-212 210-286 (345)
320 PRK06349 homoserine dehydrogen 93.4 0.19 4.2E-06 53.6 7.1 90 112-209 4-101 (426)
321 COG1648 CysG Siroheme synthase 93.4 0.49 1.1E-05 46.1 9.3 82 106-196 8-90 (210)
322 cd00704 MDH Malate dehydrogena 93.3 0.24 5.2E-06 51.1 7.3 64 113-186 2-84 (323)
323 PRK15076 alpha-galactosidase; 93.3 0.2 4.4E-06 53.7 6.9 74 111-189 1-86 (431)
324 TIGR01202 bchC 2-desacetyl-2-h 93.3 0.45 9.7E-06 47.8 9.1 87 109-211 144-230 (308)
325 TIGR01851 argC_other N-acetyl- 93.3 0.43 9.2E-06 49.3 9.0 158 112-322 2-160 (310)
326 TIGR00670 asp_carb_tr aspartat 93.2 0.33 7.2E-06 49.7 8.2 70 107-185 147-223 (301)
327 PRK07688 thiamine/molybdopteri 93.2 0.47 1E-05 49.3 9.4 88 105-199 19-137 (339)
328 PRK05562 precorrin-2 dehydroge 93.2 0.65 1.4E-05 45.7 9.9 91 99-199 15-106 (223)
329 PRK03369 murD UDP-N-acetylmura 93.2 0.25 5.5E-06 53.4 7.7 71 106-186 8-78 (488)
330 COG2910 Putative NADH-flavin r 93.1 0.32 6.9E-06 47.0 7.3 95 112-215 1-107 (211)
331 PLN02520 bifunctional 3-dehydr 93.1 0.21 4.6E-06 54.9 6.9 76 107-191 376-452 (529)
332 KOG0022 Alcohol dehydrogenase, 93.1 0.17 3.7E-06 52.4 5.7 52 106-164 189-240 (375)
333 PLN02968 Probable N-acetyl-gam 93.1 0.26 5.7E-06 52.0 7.4 93 112-214 39-136 (381)
334 TIGR01772 MDH_euk_gproteo mala 93.0 0.5 1.1E-05 48.6 9.1 70 113-188 1-77 (312)
335 PRK09880 L-idonate 5-dehydroge 93.0 0.93 2E-05 46.0 11.0 93 109-212 169-266 (343)
336 PLN02353 probable UDP-glucose 92.9 0.59 1.3E-05 50.8 9.9 100 107-214 321-449 (473)
337 PRK08644 thiamine biosynthesis 92.9 0.43 9.4E-06 46.2 8.1 37 105-148 23-60 (212)
338 PRK05690 molybdopterin biosynt 92.8 0.4 8.7E-06 47.4 7.9 28 105-133 27-54 (245)
339 PRK02318 mannitol-1-phosphate 92.8 0.21 4.6E-06 52.4 6.3 84 112-202 1-104 (381)
340 PRK05671 aspartate-semialdehyd 92.8 0.32 7E-06 50.5 7.5 87 112-214 5-99 (336)
341 PRK05086 malate dehydrogenase; 92.8 0.69 1.5E-05 47.5 9.8 72 112-187 1-78 (312)
342 KOG2741 Dimeric dihydrodiol de 92.8 0.43 9.3E-06 49.8 8.2 86 112-201 7-95 (351)
343 PLN02383 aspartate semialdehyd 92.7 0.34 7.4E-06 50.5 7.6 88 112-214 8-102 (344)
344 PRK11863 N-acetyl-gamma-glutam 92.7 0.56 1.2E-05 48.4 9.0 155 112-320 3-159 (313)
345 PRK14185 bifunctional 5,10-met 92.7 0.33 7.2E-06 49.6 7.3 76 106-212 153-233 (293)
346 PLN00125 Succinyl-CoA ligase [ 92.7 0.53 1.2E-05 48.3 8.8 91 112-216 13-106 (300)
347 PRK14184 bifunctional 5,10-met 92.6 0.24 5.2E-06 50.5 6.1 76 106-212 153-233 (286)
348 TIGR01318 gltD_gamma_fam gluta 92.6 0.56 1.2E-05 50.4 9.3 35 108-149 139-173 (467)
349 TIGR01757 Malate-DH_plant mala 92.5 0.65 1.4E-05 49.3 9.4 22 112-133 45-67 (387)
350 cd01487 E1_ThiF_like E1_ThiF_l 92.5 0.8 1.7E-05 42.9 9.0 30 113-148 1-31 (174)
351 COG0078 ArgF Ornithine carbamo 92.5 0.46 9.9E-06 48.8 7.8 85 108-203 151-248 (310)
352 PRK02472 murD UDP-N-acetylmura 92.5 0.41 8.8E-06 50.6 7.9 70 108-186 3-76 (447)
353 PLN00106 malate dehydrogenase 92.4 0.3 6.4E-06 50.6 6.6 70 112-187 19-95 (323)
354 PRK08762 molybdopterin biosynt 92.4 0.68 1.5E-05 48.5 9.3 37 105-148 130-167 (376)
355 PRK12550 shikimate 5-dehydroge 92.4 0.34 7.4E-06 48.8 6.9 67 112-190 123-190 (272)
356 TIGR00978 asd_EA aspartate-sem 92.4 0.44 9.6E-06 49.3 7.8 94 112-214 1-106 (341)
357 cd01483 E1_enzyme_family Super 92.4 0.9 2E-05 40.5 8.9 29 113-147 1-30 (143)
358 PRK08328 hypothetical protein; 92.3 0.66 1.4E-05 45.5 8.6 28 105-133 22-49 (231)
359 cd01337 MDH_glyoxysomal_mitoch 92.3 0.33 7.1E-06 49.9 6.7 70 112-187 1-77 (310)
360 PRK02006 murD UDP-N-acetylmura 92.3 0.4 8.7E-06 51.8 7.8 71 108-188 5-81 (498)
361 PRK12771 putative glutamate sy 92.3 0.43 9.4E-06 52.4 8.0 75 107-188 134-232 (564)
362 TIGR01745 asd_gamma aspartate- 92.3 1.4 3E-05 46.5 11.4 169 112-325 1-179 (366)
363 PRK12809 putative oxidoreducta 92.2 0.62 1.3E-05 52.1 9.3 35 108-149 308-342 (639)
364 TIGR02822 adh_fam_2 zinc-bindi 92.2 0.97 2.1E-05 45.9 9.9 89 109-212 165-254 (329)
365 PRK08306 dipicolinate synthase 92.1 0.58 1.3E-05 47.6 8.2 85 110-209 2-98 (296)
366 PRK14874 aspartate-semialdehyd 92.0 0.5 1.1E-05 48.8 7.7 88 112-214 2-96 (334)
367 COG0771 MurD UDP-N-acetylmuram 92.0 0.39 8.4E-06 51.9 7.0 70 107-185 4-76 (448)
368 PRK14804 ornithine carbamoyltr 92.0 0.63 1.4E-05 47.9 8.3 69 107-186 150-226 (311)
369 PRK05597 molybdopterin biosynt 91.9 0.96 2.1E-05 47.2 9.7 87 105-198 23-138 (355)
370 PF10100 DUF2338: Uncharacteri 91.8 3.1 6.8E-05 44.5 13.3 174 111-300 1-209 (429)
371 PRK04284 ornithine carbamoyltr 91.8 0.51 1.1E-05 49.0 7.5 70 107-185 152-231 (332)
372 PF04016 DUF364: Domain of unk 91.8 0.14 3E-06 47.0 2.9 85 106-208 7-91 (147)
373 PRK12562 ornithine carbamoyltr 91.5 0.67 1.4E-05 48.3 8.0 71 107-186 153-233 (334)
374 TIGR01771 L-LDH-NAD L-lactate 91.5 0.82 1.8E-05 46.7 8.5 66 116-187 1-73 (299)
375 TIGR02355 moeB molybdopterin s 91.4 0.63 1.4E-05 46.0 7.4 28 105-133 19-46 (240)
376 PLN02586 probable cinnamyl alc 91.3 1.3 2.9E-05 45.5 10.0 93 109-211 183-277 (360)
377 COG0039 Mdh Malate/lactate deh 91.2 0.44 9.5E-06 49.2 6.2 71 112-186 1-77 (313)
378 PRK14181 bifunctional 5,10-met 91.2 0.67 1.5E-05 47.3 7.4 80 106-212 149-229 (287)
379 COG0002 ArgC Acetylglutamate s 91.2 1.2 2.7E-05 46.5 9.4 95 111-213 2-102 (349)
380 PRK04690 murD UDP-N-acetylmura 91.1 0.64 1.4E-05 50.1 7.6 69 108-186 6-77 (468)
381 PRK08040 putative semialdehyde 91.0 0.39 8.5E-06 50.0 5.7 168 112-325 5-177 (336)
382 CHL00194 ycf39 Ycf39; Provisio 91.0 0.82 1.8E-05 46.0 7.9 69 112-187 1-73 (317)
383 PF03447 NAD_binding_3: Homose 91.0 0.99 2.1E-05 38.9 7.4 82 118-209 1-87 (117)
384 PRK06598 aspartate-semialdehyd 90.8 2.4 5.1E-05 44.9 11.3 170 111-325 1-180 (369)
385 PRK08664 aspartate-semialdehyd 90.8 0.82 1.8E-05 47.4 7.9 93 112-213 4-108 (349)
386 PRK01713 ornithine carbamoyltr 90.8 0.72 1.6E-05 47.9 7.4 71 107-186 153-233 (334)
387 COG0136 Asd Aspartate-semialde 90.6 2.5 5.5E-05 44.1 11.1 148 112-294 2-159 (334)
388 cd08237 ribitol-5-phosphate_DH 90.6 1.7 3.6E-05 44.3 9.8 89 109-211 163-255 (341)
389 PRK10537 voltage-gated potassi 90.6 1.4 2.9E-05 46.9 9.3 91 112-211 241-336 (393)
390 PRK05600 thiamine biosynthesis 90.5 0.66 1.4E-05 48.8 6.9 88 105-199 36-152 (370)
391 PRK02102 ornithine carbamoyltr 90.5 0.83 1.8E-05 47.5 7.5 70 107-185 152-231 (331)
392 PRK00517 prmA ribosomal protei 90.2 1.3 2.7E-05 43.7 8.3 90 109-211 119-212 (250)
393 PRK06728 aspartate-semialdehyd 90.2 0.74 1.6E-05 48.2 6.8 89 112-214 6-101 (347)
394 PRK12769 putative oxidoreducta 90.1 1 2.2E-05 50.5 8.4 34 109-149 326-359 (654)
395 PRK14168 bifunctional 5,10-met 90.1 0.87 1.9E-05 46.8 7.1 76 106-212 157-237 (297)
396 PRK04308 murD UDP-N-acetylmura 90.1 1 2.2E-05 47.9 7.9 69 108-186 3-75 (445)
397 PRK02255 putrescine carbamoylt 90.1 1.8 3.8E-05 45.2 9.5 71 107-186 151-230 (338)
398 TIGR03026 NDP-sugDHase nucleot 90.0 1.3 2.8E-05 46.8 8.7 88 107-210 310-408 (411)
399 PLN02342 ornithine carbamoyltr 90.0 1.2 2.5E-05 46.8 8.1 69 107-186 191-267 (348)
400 PRK03515 ornithine carbamoyltr 89.9 1.2 2.5E-05 46.5 8.0 70 107-185 153-232 (336)
401 KOG3007 Mu-crystallin [Amino a 89.8 0.64 1.4E-05 47.3 5.7 97 113-217 140-242 (333)
402 TIGR02819 fdhA_non_GSH formald 89.7 2.7 5.9E-05 44.1 10.7 98 108-212 184-299 (393)
403 PRK08223 hypothetical protein; 89.5 1.6 3.5E-05 44.6 8.5 28 105-133 22-49 (287)
404 PRK07200 aspartate/ornithine c 89.5 1.3 2.8E-05 47.2 8.1 71 107-186 184-270 (395)
405 PRK14573 bifunctional D-alanyl 89.5 0.95 2.1E-05 52.1 7.7 65 112-185 5-70 (809)
406 TIGR01532 E4PD_g-proteo D-eryt 89.5 1.2 2.6E-05 46.2 7.8 95 113-212 1-120 (325)
407 PLN00141 Tic62-NAD(P)-related 89.2 1.1 2.5E-05 43.3 7.0 39 106-151 13-52 (251)
408 COG0289 DapB Dihydrodipicolina 89.1 2 4.3E-05 43.5 8.7 117 111-240 2-127 (266)
409 TIGR03693 ocin_ThiF_like putat 89.0 1.8 3.8E-05 48.6 8.9 78 109-193 128-219 (637)
410 PRK06392 homoserine dehydrogen 88.9 0.95 2.1E-05 46.9 6.5 22 112-133 1-22 (326)
411 PLN03075 nicotianamine synthas 88.9 2.6 5.7E-05 43.3 9.6 98 109-214 123-237 (296)
412 PRK07878 molybdopterin biosynt 88.9 1.4 3E-05 46.6 7.9 28 105-133 37-64 (392)
413 TIGR01087 murD UDP-N-acetylmur 88.8 0.96 2.1E-05 47.7 6.7 65 113-186 1-70 (433)
414 TIGR01296 asd_B aspartate-semi 88.7 0.76 1.7E-05 47.7 5.6 87 113-214 1-94 (339)
415 cd01486 Apg7 Apg7 is an E1-lik 88.5 0.99 2.1E-05 46.5 6.2 21 113-133 1-21 (307)
416 PRK00856 pyrB aspartate carbam 88.5 2 4.2E-05 44.2 8.4 65 107-185 153-220 (305)
417 PRK07411 hypothetical protein; 88.3 1.3 2.7E-05 47.0 7.1 88 105-199 33-149 (390)
418 PLN02477 glutamate dehydrogena 88.2 0.94 2E-05 48.5 6.1 32 106-144 202-233 (410)
419 PRK00779 ornithine carbamoyltr 88.2 1.6 3.4E-05 44.9 7.4 70 107-185 149-224 (304)
420 PLN02178 cinnamyl-alcohol dehy 88.2 3.4 7.4E-05 43.0 10.1 90 109-210 178-271 (375)
421 COG4569 MhpF Acetaldehyde dehy 88.2 1 2.3E-05 44.2 5.8 78 112-198 5-91 (310)
422 PRK14167 bifunctional 5,10-met 88.0 1.5 3.2E-05 45.1 7.1 80 106-212 153-233 (297)
423 PRK08192 aspartate carbamoyltr 88.0 1.8 4E-05 45.1 7.9 71 107-185 156-233 (338)
424 PRK07806 short chain dehydroge 88.0 4.2 9E-05 38.7 9.9 36 108-150 4-40 (248)
425 PLN02527 aspartate carbamoyltr 87.9 1.7 3.8E-05 44.6 7.6 71 107-185 148-225 (306)
426 COG0026 PurK Phosphoribosylami 87.8 0.8 1.7E-05 48.3 5.1 66 111-184 1-68 (375)
427 cd01491 Ube1_repeat1 Ubiquitin 87.8 2 4.4E-05 43.8 7.9 35 106-147 15-50 (286)
428 TIGR01082 murC UDP-N-acetylmur 87.7 1.4 3.1E-05 46.9 7.1 64 113-185 1-65 (448)
429 PRK06019 phosphoribosylaminoim 87.7 0.99 2.1E-05 47.0 5.8 64 111-184 2-69 (372)
430 TIGR03451 mycoS_dep_FDH mycoth 87.6 5 0.00011 40.9 10.8 93 109-211 176-275 (358)
431 TIGR01317 GOGAT_sm_gam glutama 87.6 2.4 5.2E-05 45.9 8.8 35 107-148 140-174 (485)
432 cd08255 2-desacetyl-2-hydroxye 87.6 4.6 0.0001 39.0 10.1 92 108-212 96-190 (277)
433 PRK11891 aspartate carbamoyltr 87.5 2.1 4.5E-05 46.1 8.2 71 108-186 239-316 (429)
434 PRK12814 putative NADPH-depend 87.5 2.4 5.3E-05 47.7 9.1 73 108-187 191-287 (652)
435 cd05188 MDR Medium chain reduc 87.5 6.8 0.00015 37.0 11.0 94 108-212 133-232 (271)
436 PRK01581 speE spermidine synth 87.5 3.9 8.4E-05 43.4 9.9 96 109-213 149-269 (374)
437 PRK06463 fabG 3-ketoacyl-(acyl 87.5 3.7 8E-05 39.4 9.3 84 107-214 4-89 (255)
438 PRK03803 murD UDP-N-acetylmura 87.4 1.5 3.3E-05 46.5 7.2 65 112-185 7-75 (448)
439 TIGR02469 CbiT precorrin-6Y C5 87.3 7.4 0.00016 32.6 10.1 94 109-210 19-120 (124)
440 COG1004 Ugd Predicted UDP-gluc 87.3 1.7 3.7E-05 46.4 7.2 74 108-195 308-393 (414)
441 cd08239 THR_DH_like L-threonin 87.3 3.5 7.6E-05 41.4 9.3 92 108-210 162-260 (339)
442 PRK12409 D-amino acid dehydrog 87.2 0.83 1.8E-05 47.5 4.9 34 111-150 1-34 (410)
443 cd08281 liver_ADH_like1 Zinc-d 87.2 4.6 0.0001 41.5 10.3 90 109-209 191-287 (371)
444 PRK12810 gltD glutamate syntha 87.0 2.2 4.7E-05 45.9 8.1 37 106-149 139-175 (471)
445 PRK10637 cysG siroheme synthas 86.9 3.8 8.3E-05 44.2 9.9 81 106-195 8-89 (457)
446 COG1062 AdhC Zn-dependent alco 86.9 4.7 0.0001 42.4 10.0 71 109-190 185-266 (366)
447 TIGR03316 ygeW probable carbam 86.8 2.4 5.3E-05 44.6 8.1 71 107-186 167-253 (357)
448 PRK10309 galactitol-1-phosphat 86.8 4.1 8.8E-05 41.2 9.5 47 109-162 160-206 (347)
449 PRK03806 murD UDP-N-acetylmura 86.8 2 4.3E-05 45.5 7.5 68 108-185 4-72 (438)
450 TIGR03570 NeuD_NnaD sugar O-ac 86.8 2.2 4.8E-05 39.2 7.0 77 113-200 1-81 (201)
451 TIGR00658 orni_carb_tr ornithi 86.7 2.1 4.5E-05 43.9 7.4 70 107-185 145-223 (304)
452 TIGR03201 dearomat_had 6-hydro 86.7 3.4 7.5E-05 42.0 9.0 46 109-162 166-211 (349)
453 PRK08374 homoserine dehydrogen 86.6 4.1 9E-05 42.2 9.6 95 112-209 3-119 (336)
454 PLN02514 cinnamyl-alcohol dehy 86.6 4.9 0.00011 41.2 10.1 93 109-211 180-274 (357)
455 PRK05786 fabG 3-ketoacyl-(acyl 86.5 7.6 0.00017 36.5 10.7 37 108-151 3-40 (238)
456 KOG1495 Lactate dehydrogenase 86.3 7.5 0.00016 39.9 10.8 126 106-239 16-165 (332)
457 PRK07831 short chain dehydroge 86.3 3.7 8.1E-05 39.6 8.6 42 101-149 8-51 (262)
458 PRK09242 tropinone reductase; 86.2 2.9 6.4E-05 40.1 7.8 36 108-150 7-43 (257)
459 PRK13984 putative oxidoreducta 86.2 2.7 5.8E-05 46.6 8.5 34 109-149 282-315 (604)
460 PRK09414 glutamate dehydrogena 86.0 2 4.3E-05 46.5 7.0 36 106-148 228-263 (445)
461 cd08298 CAD2 Cinnamyl alcohol 85.8 4.5 9.7E-05 40.2 9.1 88 108-210 166-254 (329)
462 COG2227 UbiG 2-polyprenyl-3-me 85.7 5 0.00011 40.2 9.1 91 108-211 58-160 (243)
463 PLN02214 cinnamoyl-CoA reducta 85.7 3 6.4E-05 42.7 7.9 76 106-188 6-91 (342)
464 PLN02740 Alcohol dehydrogenase 85.7 4.8 0.0001 41.6 9.6 47 108-162 197-244 (381)
465 PRK06182 short chain dehydroge 85.7 5.3 0.00011 38.9 9.4 71 109-187 2-83 (273)
466 PRK07825 short chain dehydroge 85.2 4.7 0.0001 39.2 8.7 36 108-150 3-39 (273)
467 PRK04523 N-acetylornithine car 85.2 3.3 7.2E-05 43.1 8.0 70 108-186 166-252 (335)
468 cd05283 CAD1 Cinnamyl alcohol 85.1 4.6 0.0001 40.6 8.9 92 109-211 169-262 (337)
469 PRK05717 oxidoreductase; Valid 85.1 4.8 0.0001 38.7 8.7 37 106-149 6-43 (255)
470 COG0334 GdhA Glutamate dehydro 85.1 2.4 5.2E-05 45.3 7.0 38 107-151 204-241 (411)
471 TIGR03649 ergot_EASG ergot alk 85.1 1.1 2.5E-05 43.9 4.4 66 113-188 1-77 (285)
472 cd08285 NADP_ADH NADP(H)-depen 84.8 5.4 0.00012 40.3 9.3 91 109-209 166-263 (351)
473 PRK08265 short chain dehydroge 84.7 5.4 0.00012 38.7 8.9 37 107-150 3-40 (261)
474 PRK06057 short chain dehydroge 84.6 7.8 0.00017 37.2 9.9 36 107-149 4-40 (255)
475 PLN02662 cinnamyl-alcohol dehy 84.6 3.2 7E-05 41.1 7.5 72 109-187 3-85 (322)
476 PLN03209 translocon at the inn 84.6 1.8 4E-05 48.2 6.1 40 106-152 76-116 (576)
477 PRK10083 putative oxidoreducta 84.5 9.5 0.00021 38.1 10.8 93 108-210 159-257 (339)
478 PRK02705 murD UDP-N-acetylmura 84.3 2.7 5.9E-05 44.6 7.2 67 113-185 2-75 (459)
479 PRK14031 glutamate dehydrogena 84.2 3.1 6.7E-05 45.1 7.5 36 106-148 224-259 (444)
480 PRK07060 short chain dehydroge 84.2 4.4 9.5E-05 38.3 7.8 37 107-150 6-43 (245)
481 PRK13394 3-hydroxybutyrate deh 84.1 4.3 9.4E-05 38.7 7.8 37 108-151 5-42 (262)
482 PRK07231 fabG 3-ketoacyl-(acyl 84.0 4.4 9.5E-05 38.3 7.8 36 108-150 3-39 (251)
483 TIGR00406 prmA ribosomal prote 84.0 6.6 0.00014 39.6 9.4 95 108-211 158-258 (288)
484 PLN02827 Alcohol dehydrogenase 83.9 7.6 0.00016 40.3 10.1 49 108-163 192-240 (378)
485 PRK14805 ornithine carbamoyltr 83.9 3.1 6.6E-05 42.7 7.0 70 107-186 144-222 (302)
486 PF12847 Methyltransf_18: Meth 83.7 3.8 8.2E-05 34.1 6.4 91 109-210 1-109 (112)
487 cd08234 threonine_DH_like L-th 83.5 6.4 0.00014 39.1 9.1 92 109-211 159-256 (334)
488 PRK06079 enoyl-(acyl carrier p 83.4 5.6 0.00012 38.5 8.4 87 107-214 4-93 (252)
489 cd05313 NAD_bind_2_Glu_DH NAD( 83.4 1.8 3.8E-05 43.6 4.9 32 106-144 34-65 (254)
490 PRK09186 flagellin modificatio 83.3 5.2 0.00011 38.1 8.0 36 108-150 2-38 (256)
491 cd05279 Zn_ADH1 Liver alcohol 83.2 8.3 0.00018 39.5 9.9 47 109-162 183-229 (365)
492 PF01494 FAD_binding_3: FAD bi 83.0 1.8 3.9E-05 42.7 4.9 32 113-150 3-34 (356)
493 PRK07523 gluconate 5-dehydroge 83.0 4.8 0.00011 38.6 7.7 36 107-149 7-43 (255)
494 PRK05867 short chain dehydroge 82.9 4.3 9.4E-05 38.9 7.3 35 108-149 7-42 (253)
495 cd08287 FDH_like_ADH3 formalde 82.7 13 0.00028 37.3 10.9 92 109-210 168-266 (345)
496 PRK08324 short chain dehydroge 82.6 4 8.6E-05 46.1 7.9 40 106-152 418-458 (681)
497 cd08277 liver_alcohol_DH_like 82.5 8.1 0.00018 39.6 9.6 47 108-162 183-230 (365)
498 PRK13814 pyrB aspartate carbam 82.5 2.7 5.8E-05 43.4 6.0 65 107-184 154-223 (310)
499 TIGR02818 adh_III_F_hyde S-(hy 82.5 7.8 0.00017 39.9 9.5 47 109-163 185-232 (368)
500 PRK01368 murD UDP-N-acetylmura 82.4 3.7 8E-05 44.2 7.3 33 109-149 5-37 (454)
No 1
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.7e-84 Score=641.76 Aligned_cols=310 Identities=32% Similarity=0.552 Sum_probs=295.4
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
+.|+| |||+|||||+||+++|+||||| |++|+||+|.++.||++|+++||. +.+++|++++||+|+++
T Consensus 14 ~~Lkg-K~iaIIGYGsQG~ahalNLRDS------GlnViiGlr~g~~s~~kA~~dGf~-----V~~v~ea~k~ADvim~L 81 (338)
T COG0059 14 DLLKG-KKVAIIGYGSQGHAQALNLRDS------GLNVIIGLRKGSSSWKKAKEDGFK-----VYTVEEAAKRADVVMIL 81 (338)
T ss_pred hHhcC-CeEEEEecChHHHHHHhhhhhc------CCcEEEEecCCchhHHHHHhcCCE-----eecHHHHhhcCCEEEEe
Confidence 58999 9999999999999999999999 999999999999999999999999 68999999999999999
Q ss_pred ecchhHHHHHH-HHHhcCCCCcEEEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEe
Q 012479 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (462)
Q Consensus 186 vpd~a~~~vl~-eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~alia 264 (462)
+||.+|.+||+ +|.|+|++|++|.|+||||+++. .+.||+|++||||+||+||+.||++|++| +|+|++|+
T Consensus 82 ~PDe~q~~vy~~~I~p~Lk~G~aL~FaHGfNihf~---~i~ppkdvdV~MVAPKgPG~~VR~~y~~G-----~GvP~LiA 153 (338)
T COG0059 82 LPDEQQKEVYEKEIAPNLKEGAALGFAHGFNIHFG---LIVPPKDVDVIMVAPKGPGHLVRREYKEG-----FGVPALIA 153 (338)
T ss_pred CchhhHHHHHHHHhhhhhcCCceEEeccccceecc---eecCCccCcEEEEcCCCCcHHHHHHHHcc-----CCceeEEE
Confidence 99999999999 79999999999999999999873 57999999999999999999999999997 89999999
Q ss_pred eccCCCHHHHHHHHHHHHHhCCCc--ccccchhhhccccchhhhHhHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 012479 265 VHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI 342 (462)
Q Consensus 265 v~qd~tgea~e~a~al~~aiG~~~--viettf~~E~~~dlfgeqtvL~G~~paliea~~d~~v~~G~~~e~A~~~~~e~i 342 (462)
++||+|++++++|++|++++|++| +++|||++|+++||||||++|||++.++|.++||++|++||+||+||++|+|++
T Consensus 154 V~qD~sG~a~~~Ala~AkgiGg~RaGvieTTFkeEtetDLfGEQ~vLcGgl~~li~agfetLvEaGy~PE~AyfE~lhE~ 233 (338)
T COG0059 154 VHQDASGKALDIALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLQALIKAGFETLVEAGYQPELAYFECLHEL 233 (338)
T ss_pred EEeCCCchHHHHHHHHHHhcCCCccceEeeeeHHhhhcccccchhhhhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 999999999999999999999986 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcHHHHHHhcCCcchhhhchhhccC---chhHHHHHHHHHHhccCChhhhHHHHhcccccccCCCCccc-
Q 012479 343 TGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSAS---YYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFP- 418 (462)
Q Consensus 343 ~Gli~~li~e~G~~~m~~~vs~~~~aeyg~~~~~~---~~~~~~~m~e~~~~i~~G~far~~~~~~~~~~~~~g~~~~~- 418 (462)
+ +|+|||+|+||..|+++|| +||+||+|.+++ ...+|+.|+++|++||||+|+|+|++|++ +|+|.|+
T Consensus 234 k-lIvdLiyegGi~~M~~siS--nTAeyG~~~~gprii~~~~k~~mk~~l~dIq~G~Fak~~~~e~~-----~g~p~l~~ 305 (338)
T COG0059 234 K-LIVDLIYEGGITNMRYSIS--NTAEYGDYTRGPRIIDAETKEEMKKVLKDIQSGEFAKEWILENQ-----AGRPKLEA 305 (338)
T ss_pred H-HHHHHHHHhhHHHHHHhcC--CHHHhcccccCceeecHHhHHHHHHHHHHHhcChhHHHHHHhhh-----cCCHHHHH
Confidence 8 9999999999999999999 588899998775 24579999999999999999999999986 6899988
Q ss_pred ch-hhhcChhHHHhHHHHhcCCCCCC
Q 012479 419 MG-KIDQTRMWKVGERVRSTRPAGDL 443 (462)
Q Consensus 419 ~~-~i~~~~ie~vG~~lR~~~~~~~~ 443 (462)
++ ..++|+||+||++||++|||.+.
T Consensus 306 ~r~~~~~~~iEkvg~~lrk~m~~~~~ 331 (338)
T COG0059 306 LREETAEHEIEKVGKELRKMMPWEKK 331 (338)
T ss_pred HHHHhhcChHHHHHHHHHHhcchhcc
Confidence 44 55899999999999999999874
No 2
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=100.00 E-value=6.4e-80 Score=640.32 Aligned_cols=332 Identities=27% Similarity=0.441 Sum_probs=309.6
Q ss_pred ccccccchhhhhhhh-----ccccccceeecCcccccccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEE
Q 012479 71 LLDFETSVFKKDMIS-----LADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKV 145 (462)
Q Consensus 71 ~~~~~~~~~~~~~~~-----~~~~~e~~~~~~~~~f~~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Viv 145 (462)
.|||||++|++|+++ |++++| |+..+..|+| |+|+|||||+||+++|+|||++ |++|+|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~r~~~r~e---------f~~~~~~Lkg-KtIaIIGyGSqG~AqAlNLrdS------GvnVvv 64 (487)
T PRK05225 1 ANYFNTLNLRQQLAQLGKCRFMDRDE---------FADGASYLKG-KKIVIVGCGAQGLNQGLNMRDS------GLDISY 64 (487)
T ss_pred CCccccccHHHHHHHhccceecchhh---------ccchhHHhCC-CEEEEEccCHHHHHHhCCCccc------cceeEE
Confidence 499999999999998 888888 9888999999 9999999999999999999999 999999
Q ss_pred EecCC-----chhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEeccchHHHhh
Q 012479 146 GLRKG-----SRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQ 220 (462)
Q Consensus 146 g~r~~-----~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~G~~i~~~~ 220 (462)
|+|++ ++++++|.++||. +.+.+|++++||+|++++||..+..++++|+|+||+|++|.++|||+|++.
T Consensus 65 glr~~~id~~~~s~~kA~~dGF~-----v~~~~Ea~~~ADvVviLlPDt~q~~v~~~i~p~LK~Ga~L~fsHGFni~~~- 138 (487)
T PRK05225 65 ALRKEAIAEKRASWRKATENGFK-----VGTYEELIPQADLVINLTPDKQHSDVVRAVQPLMKQGAALGYSHGFNIVEV- 138 (487)
T ss_pred eccccccccccchHHHHHhcCCc-----cCCHHHHHHhCCEEEEcCChHHHHHHHHHHHhhCCCCCEEEecCCceeeeC-
Confidence 99986 6799999999997 578999999999999999999999999999999999999999999999764
Q ss_pred hccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeec--cCCCHHHHHHHHHHHHHhCCCc--ccccchhh
Q 012479 221 SMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH--QDVDGRATNVALGWSVALGSPF--TFATTLEQ 296 (462)
Q Consensus 221 ~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~--qd~tgea~e~a~al~~aiG~~~--viettf~~ 296 (462)
++.||+|++||+|+||+||+.||++|++| +|+|++|+|+ ||++++++++|++|+.++|+++ +++|||++
T Consensus 139 --~i~~~~dvdVimvAPKgpG~~vR~~y~~G-----~Gvp~l~AV~~~qD~~g~a~~~ala~a~~iG~~ragv~~ttf~~ 211 (487)
T PRK05225 139 --GEQIRKDITVVMVAPKCPGTEVREEYKRG-----FGVPTLIAVHPENDPKGEGMAIAKAWAAATGGHRAGVLESSFVA 211 (487)
T ss_pred --ceeCCCCCcEEEECCCCCCchHHHHHhcC-----CCceEEEEEeecCCCCchHHHHHHHHHHHhCCCccceeecchHH
Confidence 57999999999999999999999999997 8999999999 8999999999999999999995 99999999
Q ss_pred hccccchhhhHhHHhHH-----------------------------------------H---------------------
Q 012479 297 EYRSDIFGERGILLGAV-----------------------------------------H--------------------- 314 (462)
Q Consensus 297 E~~~dlfgeqtvL~G~~-----------------------------------------p--------------------- 314 (462)
|+++||||||++|||++ .
T Consensus 212 E~~sDL~GEq~vLcG~~~~~~~~~Fe~lve~G~~pe~A~k~~~~~~E~I~e~i~e~GI~~m~d~~S~tak~ga~~~~~~~ 291 (487)
T PRK05225 212 EVKSDLMGEQTILCGMLQAGSLLCFDKLVAEGTDPAYAEKLIQFGWETITEALKQGGITLMMDRLSNPAKIRAFELSEQL 291 (487)
T ss_pred HHhhcchhhHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhHHHHHHHHHhccHHHHHHhccchhhcccccccHHH
Confidence 99999999999999999 4
Q ss_pred ----------------------------------------------------------------------HHHHHH----
Q 012479 315 ----------------------------------------------------------------------GIVESL---- 320 (462)
Q Consensus 315 ----------------------------------------------------------------------aliea~---- 320 (462)
++++++
T Consensus 292 k~~m~p~f~~~~~~I~sG~fak~~m~d~~~~~~~l~~~r~~~~~~~~E~~~~~~~~~~~~~~~erG~Lm~a~~~~g~e~~ 371 (487)
T PRK05225 292 KEIMAPLFQKHMDDIISGEFSSTMMADWANDDKKLLTWREETGKTAFENAPQYEGKISEQEYFDKGVLMVAMVKAGVELA 371 (487)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHhcCChHHHHHHHHhhcCchhhcccccccchhHHHHhhhhHHHHHHHhhhHHH
Confidence 566676
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCCcchhhhchhhccCchhHHHHHHHHHHhccCChhhhH
Q 012479 321 FRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRS 400 (462)
Q Consensus 321 ~d~~v~~G~~~e~A~~~~~e~i~Gli~~li~e~G~~~m~~~vs~~~~aeyg~~~~~~~~~~~~~m~e~~~~i~~G~far~ 400 (462)
||++|++||+||.||++++|+++ ||++||+|+|+.+|+++|| +|||||+|+++. .+.+.|+++|++||+|+|+|+
T Consensus 372 FEtLveaGy~PE~AYfE~lhElk-LIvdLi~e~Gl~~M~~~iS--dTAeyG~y~~g~--~vi~~mk~~l~~Iq~G~fak~ 446 (487)
T PRK05225 372 FETMVDSGIIEESAYYESLHELP-LIANTIARKRLYEMNVVIS--DTAEYGNYLFSH--AAVPLLKDFMATLQPGDLGKG 446 (487)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHhh--hHhhcCCcccCh--HHHHHHHHHHHHcCCCHHHhh
Confidence 99999999999999999999996 9999999999999999999 689999987653 244699999999999999999
Q ss_pred HHHhcccccccCCCCccc-c-hhhhcChhHHHhHHHHhcCCCCC
Q 012479 401 VVLAGRRFYEKEGLPAFP-M-GKIDQTRMWKVGERVRSTRPAGD 442 (462)
Q Consensus 401 ~~~~~~~~~~~~g~~~~~-~-~~i~~~~ie~vG~~lR~~~~~~~ 442 (462)
| .+|+ .|.|.|+ + +++++|+||+||++||++|+||+
T Consensus 447 ~-~e~~-----~g~~~l~~~~~~~~~h~iE~vG~~LR~~m~~m~ 484 (487)
T PRK05225 447 L-PSNA-----VDNAQLRDVNEAIRNHPIEQVGKKLRGYMTDMK 484 (487)
T ss_pred H-Hhcc-----CCcHHHHHHHHHHhcCcHHHHHHHHHHHhHhhh
Confidence 9 7776 5788887 3 47799999999999999999998
No 3
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=100.00 E-value=1.6e-78 Score=610.50 Aligned_cols=310 Identities=31% Similarity=0.513 Sum_probs=290.3
Q ss_pred cccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEE
Q 012479 104 LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (462)
Q Consensus 104 ~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvVi 183 (462)
..+.|+| +||||||+|+||.++|+||+++ |++|++++|+ .++++.+.+.|+. +.+++|++++||+|+
T Consensus 10 ~~~~Lkg-KtVGIIG~GsIG~amA~nL~d~------G~~ViV~~r~-~~s~~~A~~~G~~-----v~sl~Eaak~ADVV~ 76 (335)
T PRK13403 10 NVELLQG-KTVAVIGYGSQGHAQAQNLRDS------GVEVVVGVRP-GKSFEVAKADGFE-----VMSVSEAVRTAQVVQ 76 (335)
T ss_pred ChhhhCc-CEEEEEeEcHHHHHHHHHHHHC------cCEEEEEECc-chhhHHHHHcCCE-----ECCHHHHHhcCCEEE
Confidence 3588999 9999999999999999999999 9999998876 6678888888997 458999999999999
Q ss_pred EeecchhHHHHHH-HHHhcCCCCcEEEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEE
Q 012479 184 LLISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSS 262 (462)
Q Consensus 184 Lavpd~a~~~vl~-eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~al 262 (462)
+++|+..+.+++. +++++|++|++|.|+|||+|++. .+.||+|++||||+||+||+.||++|++| +|+|++
T Consensus 77 llLPd~~t~~V~~~eil~~MK~GaiL~f~hgfni~~~---~i~pp~~vdv~mvaPKgpG~~vR~~y~~G-----~Gvp~l 148 (335)
T PRK13403 77 MLLPDEQQAHVYKAEVEENLREGQMLLFSHGFNIHFG---QINPPSYVDVAMVAPKSPGHLVRRVFQEG-----NGVPAL 148 (335)
T ss_pred EeCCChHHHHHHHHHHHhcCCCCCEEEECCCcceecC---ceeCCCCCeEEEECCCCCChHHHHHHHcC-----CCceeE
Confidence 9999998889986 69999999999999999999773 57999999999999999999999999997 899999
Q ss_pred EeeccCCCHHHHHHHHHHHHHhCCCc--ccccchhhhccccchhhhHhHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 012479 263 FAVHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVE 340 (462)
Q Consensus 263 iav~qd~tgea~e~a~al~~aiG~~~--viettf~~E~~~dlfgeqtvL~G~~paliea~~d~~v~~G~~~e~A~~~~~e 340 (462)
|+++||+|+++++++++|+++||+++ +++|||++|+++||||||++|||++.+||+++||++|++||+||+||++|+|
T Consensus 149 ~av~qd~sg~a~~~ala~a~~iG~~ragv~~ttf~~EtetDlfgEq~vL~Gg~~~li~~gfe~lveaGy~pe~Ayfe~~h 228 (335)
T PRK13403 149 VAVHQDATGTALHVALAYAKGVGCTRAGVIETTFQEETETDLFGEQAVLCGGVTALVKAGFETLTEGGYRPEIAYFECLH 228 (335)
T ss_pred EEEEECCCCcHHHHHHHHHHHcCCCceeEEecchHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999999999999999996 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcHHHHHHhcCCcchhhhchhhccC---chhHHHHHHHHHHhccCChhhhHHHHhcccccccCCCCcc
Q 012479 341 CITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSAS---YYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAF 417 (462)
Q Consensus 341 ~i~Gli~~li~e~G~~~m~~~vs~~~~aeyg~~~~~~---~~~~~~~m~e~~~~i~~G~far~~~~~~~~~~~~~g~~~~ 417 (462)
+++ ||+|||+|+|+.+|+++|| +|||||+|++++ .+.+|+.|+++|++||+|+|||+|+.||+ +|+|.|
T Consensus 229 e~k-li~dli~e~G~~~m~~~~S--~taeyG~~~~g~~ii~~~~k~~m~~~l~~iq~g~fa~~~~~e~~-----~g~~~~ 300 (335)
T PRK13403 229 ELK-LIVDLMYEGGLTNMRHSIS--DTAEFGDYVTGSRIVTDETKKEMKRVLTEIQQGEFAKKWILENQ-----AGRPTY 300 (335)
T ss_pred HHH-HHHHHHHHccHHHHHHhhC--cHHhcCCccCCCcccCHHHHHHHHHHHHHhcCCHHHHHHHHHhh-----CCCHHH
Confidence 997 9999999999999999999 688999999875 35689999999999999999999999986 799988
Q ss_pred c-c-hhhhcChhHHHhHHHHhcCCCCC
Q 012479 418 P-M-GKIDQTRMWKVGERVRSTRPAGD 442 (462)
Q Consensus 418 ~-~-~~i~~~~ie~vG~~lR~~~~~~~ 442 (462)
+ + +++++|+||+||++||++|||-+
T Consensus 301 ~~~~~~~~~h~ie~vg~~lR~~~~~~~ 327 (335)
T PRK13403 301 NAMKKAEQNHQLEKVGEELREMMSWIH 327 (335)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhCCccc
Confidence 8 3 46689999999999999999954
No 4
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=100.00 E-value=6.9e-73 Score=574.09 Aligned_cols=310 Identities=32% Similarity=0.538 Sum_probs=291.3
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
...|+| ++|+|||+|+||+++|++|+++ |++|++++++++++++.+++.|+.. .+.+|++++||+|++
T Consensus 12 ~~~L~g-ktIgIIG~GsmG~AlA~~L~~s------G~~Vvv~~r~~~~s~~~A~~~G~~~-----~s~~eaa~~ADVVvL 79 (330)
T PRK05479 12 LSLIKG-KKVAIIGYGSQGHAHALNLRDS------GVDVVVGLREGSKSWKKAEADGFEV-----LTVAEAAKWADVIMI 79 (330)
T ss_pred hhhhCC-CEEEEEeeHHHHHHHHHHHHHC------CCEEEEEECCchhhHHHHHHCCCee-----CCHHHHHhcCCEEEE
Confidence 477899 9999999999999999999999 9999999888888899999999973 589999999999999
Q ss_pred eecchhHHHHH-HHHHhcCCCCcEEEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEE
Q 012479 185 LISDAAQADNY-EKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (462)
Q Consensus 185 avpd~a~~~vl-~eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~ali 263 (462)
++||..+.+++ ++|+|+|++|++|+++|||++++.+ +.||++++|||+|||+|++.+|+.|+.| +|+|+++
T Consensus 80 aVPd~~~~~V~~~~I~~~Lk~g~iL~~a~G~~i~~~~---~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G-----~Gv~~l~ 151 (330)
T PRK05479 80 LLPDEVQAEVYEEEIEPNLKEGAALAFAHGFNIHFGQ---IVPPADVDVIMVAPKGPGHLVRREYEEG-----GGVPCLI 151 (330)
T ss_pred cCCHHHHHHHHHHHHHhcCCCCCEEEECCCCChhhce---eccCCCCcEEEeCCCCCchhhhhhhhcC-----CCceEEE
Confidence 99999999999 6799999999999999999998865 4888999999999999999999999997 8999999
Q ss_pred eeccCCCHHHHHHHHHHHHHhCCCc--ccccchhhhccccchhhhHhHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 012479 264 AVHQDVDGRATNVALGWSVALGSPF--TFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVEC 341 (462)
Q Consensus 264 av~qd~tgea~e~a~al~~aiG~~~--viettf~~E~~~dlfgeqtvL~G~~paliea~~d~~v~~G~~~e~A~~~~~e~ 341 (462)
++++|+++++++++++|++++|+++ +++|||++|+++||||||++|||++.+|++++||++|++||+||+||++|+|+
T Consensus 152 av~~d~t~~a~~~a~~l~~aiG~~~~g~~~ttf~~e~~~dl~geq~vl~gg~~~l~~~~~e~l~eaG~~pe~Ay~e~~~e 231 (330)
T PRK05479 152 AVHQDASGNAKDLALAYAKGIGGTRAGVIETTFKEETETDLFGEQAVLCGGLTELIKAGFETLVEAGYQPEMAYFECLHE 231 (330)
T ss_pred EecCCCCHHHHHHHHHHHHHcCCCccceeeeeecccccccchhhHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999999999999999995 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcHHHHHHhcCCcchhhhchhhccC---chhHHHHHHHHHHhccCChhhhHHHHhcccccccCCCCccc
Q 012479 342 ITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSAS---YYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFP 418 (462)
Q Consensus 342 i~Gli~~li~e~G~~~m~~~vs~~~~aeyg~~~~~~---~~~~~~~m~e~~~~i~~G~far~~~~~~~~~~~~~g~~~~~ 418 (462)
++ ||+|||+|+|+.+|+++|| +|||||+|+++. .+.+|+.|+++|++||+|+|+|+|++||+ +|+|.|+
T Consensus 232 ~k-~i~dl~~~~g~~~m~~~~s--~ta~~g~~~~~~~~~~~~~~~~m~~~~~~i~~g~fa~~~~~~~~-----~~~~~~~ 303 (330)
T PRK05479 232 LK-LIVDLIYEGGIANMRYSIS--NTAEYGDYVSGPRVITEETKKEMKEVLKDIQSGEFAKEWILENK-----AGRPTFK 303 (330)
T ss_pred HH-HHHHHHHHccHHHHHHhcC--cHhhcCccccCCcccCHHHHHHHHHHHHHcCCCHHHHHHHHHhc-----CCcHHHH
Confidence 97 8999999999999999999 688999998875 35799999999999999999999999986 6889988
Q ss_pred -c-hhhhcChhHHHhHHHHhcCCCCC
Q 012479 419 -M-GKIDQTRMWKVGERVRSTRPAGD 442 (462)
Q Consensus 419 -~-~~i~~~~ie~vG~~lR~~~~~~~ 442 (462)
+ +++++|+||+||++||++|||.+
T Consensus 304 ~~~~~~~~~~~e~~g~~lr~~~~~~~ 329 (330)
T PRK05479 304 ALRREEAEHPIEKVGAKLRAMMPWIK 329 (330)
T ss_pred HHHHHHhcCcHHHHHHHHHHhccccc
Confidence 4 46689999999999999999965
No 5
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=100.00 E-value=3e-69 Score=545.46 Aligned_cols=307 Identities=33% Similarity=0.535 Sum_probs=281.9
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeec
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavp 187 (462)
|+| |||+|||+|+||+++|++|+++ |+++++++++++++++.+.+.|+. +.++.+++++||+|+|++|
T Consensus 1 l~~-kkIgiIG~G~mG~AiA~~L~~s------G~~Viv~~~~~~~~~~~a~~~Gv~-----~~s~~ea~~~ADiVvLaVp 68 (314)
T TIGR00465 1 LKG-KTVAIIGYGSQGHAQALNLRDS------GLNVIVGLRKGGASWKKATEDGFK-----VGTVEEAIPQADLIMNLLP 68 (314)
T ss_pred CCc-CEEEEEeEcHHHHHHHHHHHHC------CCeEEEEECcChhhHHHHHHCCCE-----ECCHHHHHhcCCEEEEeCC
Confidence 578 9999999999999999999999 988888888777778888888987 3568899999999999999
Q ss_pred chhHHH-HHHHHHhcCCCCcEEEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeec
Q 012479 188 DAAQAD-NYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (462)
Q Consensus 188 d~a~~~-vl~eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~ 266 (462)
|+.+.. +.++|.++++++.+|+++|||++++++. .+|++++|||+|||+|++.+|++|++| +|+|++++++
T Consensus 69 p~~~~~~v~~ei~~~l~~g~iVs~aaG~~i~~~~~---~~~~~~~VvrvmPn~p~~~vr~~~~~G-----~G~~~l~a~~ 140 (314)
T TIGR00465 69 DEVQHEVYEAEIQPLLKEGKTLGFSHGFNIHFVQI---VPPKDVDVVMVAPKGPGTLVREEYKEG-----FGVPTLIAVE 140 (314)
T ss_pred cHhHHHHHHHHHHhhCCCCcEEEEeCCccHhhccc---cCCCCCcEEEECCCCCcHHHHHHhhcC-----CCeeEEEEec
Confidence 995554 5557999999999999999999988765 778899999999999999999999997 8999988899
Q ss_pred cCCCHHHHHHHHHHHHHhCCC--cccccchhhhccccchhhhHhHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Q 012479 267 QDVDGRATNVALGWSVALGSP--FTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITG 344 (462)
Q Consensus 267 qd~tgea~e~a~al~~aiG~~--~viettf~~E~~~dlfgeqtvL~G~~paliea~~d~~v~~G~~~e~A~~~~~e~i~G 344 (462)
+|+++++++++++|++++|.+ ++++|+|++|+++|+|++||+||||+|+++.+++|++|++|||||+||++++||++|
T Consensus 141 ~~~~~~~~~~~~~~~~~iG~~~~~~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~~~~ealv~~G~~~e~A~~~~~~~~~g 220 (314)
T TIGR00465 141 QDPTGEAMAIALAYAKAIGGGRAGVLETTFKEETESDLFGEQAVLCGGLTALIKAGFDTLVEAGYQPELAYFETVHELKL 220 (314)
T ss_pred CCCCHHHHHHHHHHHHHcCCCccceeechhHhhhhHHhcCcchhHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999 499999999999999999999999999999999999999999999999999999997
Q ss_pred HHHHHHHHhcHHHHHHhcCCcchhhhchhhccC--chhHHHHHHHHHHhccCChhhhHHHHhcccccccCCCCccc-c-h
Q 012479 345 IISKIISTQGMLAVYNSFSGEDKKEFEKAYSAS--YYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFP-M-G 420 (462)
Q Consensus 345 li~~li~e~G~~~m~~~vs~~~~aeyg~~~~~~--~~~~~~~m~e~~~~i~~G~far~~~~~~~~~~~~~g~~~~~-~-~ 420 (462)
+++|++++|+..|+|+|| +|||||+|..+. .+.+|+.|+++|++||||+|+|+|+.+++ .|.|.|+ + +
T Consensus 221 -~~~l~~e~g~~~l~~~Vs--staeyg~~~~~~~~~~~~~~~~~~~~~~i~~g~fa~~~~~~~~-----~~~~~~~~~~~ 292 (314)
T TIGR00465 221 -IVDLIYEGGITGMRDRIS--NTAEYGALTRRRIIKEELKPEMQKILKEIQNGEFAKEWALENE-----AGKPAFNTARK 292 (314)
T ss_pred -HHHHHHHhcHHHHHHHcC--CHHHcCcchhHHHhhHHHHHHHHHHHHHhCCChhhhhhhhhcc-----CCcHHHHHHHH
Confidence 999999999999999999 688999997664 25589999999999999999999999875 6889888 3 4
Q ss_pred hhhcChhHHHhHHHHhcCCCCC
Q 012479 421 KIDQTRMWKVGERVRSTRPAGD 442 (462)
Q Consensus 421 ~i~~~~ie~vG~~lR~~~~~~~ 442 (462)
++++|+||+||++||++|||++
T Consensus 293 ~~~~~~~e~vg~~lr~~~~~~~ 314 (314)
T TIGR00465 293 YESEHEIEKVGKELRAMVPAGK 314 (314)
T ss_pred HHhCCcHHHHHHHHHHhccCCC
Confidence 6799999999999999999985
No 6
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=100.00 E-value=1.2e-41 Score=312.99 Aligned_cols=160 Identities=44% Similarity=0.728 Sum_probs=137.7
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeec
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavp 187 (462)
|+| |+|+|||||+||+++|+||||| |++|+|++|+++++|++|+++||. +.+.+|++++||+|++++|
T Consensus 2 l~~-k~IAViGyGsQG~a~AlNLrDS------G~~V~Vglr~~s~s~~~A~~~Gf~-----v~~~~eAv~~aDvV~~L~P 69 (165)
T PF07991_consen 2 LKG-KTIAVIGYGSQGHAHALNLRDS------GVNVIVGLREGSASWEKAKADGFE-----VMSVAEAVKKADVVMLLLP 69 (165)
T ss_dssp HCT-SEEEEES-SHHHHHHHHHHHHC------C-EEEEEE-TTCHHHHHHHHTT-E-----CCEHHHHHHC-SEEEE-S-
T ss_pred cCC-CEEEEECCChHHHHHHHHHHhC------CCCEEEEecCCCcCHHHHHHCCCe-----eccHHHHHhhCCEEEEeCC
Confidence 688 9999999999999999999999 999999999999999999999999 5799999999999999999
Q ss_pred chhHHHHHH-HHHhcCCCCcEEEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeec
Q 012479 188 DAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (462)
Q Consensus 188 d~a~~~vl~-eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~ 266 (462)
|..|.++|+ +|.|+|++|++|.|+|||++++ ..+.+|++++|+|++||+||+.+|++|++| +|+|++++++
T Consensus 70 D~~q~~vy~~~I~p~l~~G~~L~fahGfni~~---~~i~pp~~vdV~mvAPKgpG~~vR~~y~~G-----~Gvp~l~AV~ 141 (165)
T PF07991_consen 70 DEVQPEVYEEEIAPNLKPGATLVFAHGFNIHY---GLIKPPKDVDVIMVAPKGPGHLVRREYVEG-----RGVPALIAVH 141 (165)
T ss_dssp HHHHHHHHHHHHHHHS-TT-EEEESSSHHHHC---TTS---TTSEEEEEEESSSCHHHHHHHHCC-----TS--EEEEEE
T ss_pred hHHHHHHHHHHHHhhCCCCCEEEeCCcchhhc---CcccCCCCCeEEEEecCCCChHHHHHHHcC-----CCceEEEEEE
Confidence 999999995 7999999999999999999976 347899999999999999999999999997 7999999999
Q ss_pred cCCCHHHHHHHHHHHHHhCCC
Q 012479 267 QDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 267 qd~tgea~e~a~al~~aiG~~ 287 (462)
||+|+++++++++|+++||++
T Consensus 142 qD~sg~A~~~ala~A~~iG~~ 162 (165)
T PF07991_consen 142 QDASGKAKELALAYAKAIGGT 162 (165)
T ss_dssp E-SSS-HHHHHHHHHHHTTHH
T ss_pred ECCCchHHHHHHHHHHHhCCc
Confidence 999999999999999999975
No 7
>PF01450 IlvC: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR000506 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine []. The enzyme forms a tetramer of similar but non-identical chains, and requires magnesium as a cofactor.; GO: 0004455 ketol-acid reductoisomerase activity, 0009082 branched chain family amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 1NP3_C 1YRL_C 3FR8_B 3FR7_A.
Probab=100.00 E-value=1.9e-38 Score=288.66 Aligned_cols=141 Identities=28% Similarity=0.461 Sum_probs=127.3
Q ss_pred hhhhccccchhhhHhHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCCcchhhhchh
Q 012479 294 LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKA 373 (462)
Q Consensus 294 f~~E~~~dlfgeqtvL~G~~paliea~~d~~v~~G~~~e~A~~~~~e~i~Gli~~li~e~G~~~m~~~vs~~~~aeyg~~ 373 (462)
|++|+++||||||++|||+++++|+++||++|++||+||.||++++|++. +|+++|+++|+..|+++|| +||+||+|
T Consensus 1 F~~E~~sDLfGEq~vL~Ggv~~lv~~~Fe~lve~G~~pE~Ay~e~~~e~~-lI~dli~~~Gi~~M~~~iS--~TAeyG~~ 77 (145)
T PF01450_consen 1 FKEETESDLFGEQAVLCGGVHALVEAGFETLVEAGYSPEIAYFECLHETK-LIVDLIYEGGIYGMYDSIS--DTAEYGAY 77 (145)
T ss_dssp HHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHTT--HHHHHHHTHHHHH-HHHHHHHHHHHHHHHHTS---HHHHHHHH
T ss_pred ChHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HHHHHHHHccHHHHHHhcC--CHHHhHHH
Confidence 68999999999999999999999999999999999999999999999964 9999999999999999999 68899999
Q ss_pred hccC--chhHHHHHHHHHHhccCChhhhHHHHhcccccccCCCCccc--chhhhcChhHHHhHHHHhcCCCCC
Q 012479 374 YSAS--YYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFP--MGKIDQTRMWKVGERVRSTRPAGD 442 (462)
Q Consensus 374 ~~~~--~~~~~~~m~e~~~~i~~G~far~~~~~~~~~~~~~g~~~~~--~~~i~~~~ie~vG~~lR~~~~~~~ 442 (462)
..+. +.++|+.|+++|++|++|+|+|+|+.+++ .|.+.++ ++++++|+||+||++||++|||+|
T Consensus 78 ~~~~r~~~~~k~~m~~~l~~I~~G~fak~~i~e~~-----~g~~~l~~~~~~~~~~~~e~VG~~lR~~~~~~k 145 (145)
T PF01450_consen 78 TWGPRIIEAVKPLMKEILEDIQSGEFAKEWIEENQ-----AGDPRLNAMREKIRNHPIEKVGEKLRAMMPWMK 145 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHH-----TTSHHHHHHHHHHSTSHHHHHHHHHHHTHTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHhc-----CCCHHHHHHHHhhcCCcchhHHHHHHHhccccC
Confidence 8664 36789999999999999999999999976 4667666 358899999999999999999985
No 8
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=100.00 E-value=9.3e-34 Score=280.44 Aligned_cols=218 Identities=19% Similarity=0.274 Sum_probs=195.9
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCC----cEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEee
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G----~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
++||+|||+|+||.+++.+|.++ | .+|++..|..++..+.+.++|+.. ..+..+++.++|+|||++
T Consensus 1 ~~~IgfIG~G~Mg~Ai~~gl~~~------g~~~~~~I~v~~~~~e~~~~l~~~~g~~~----~~~~~~~~~~advv~Lav 70 (266)
T COG0345 1 MMKIGFIGAGNMGEAILSGLLKS------GALPPEEIIVTNRSEEKRAALAAEYGVVT----TTDNQEAVEEADVVFLAV 70 (266)
T ss_pred CceEEEEccCHHHHHHHHHHHhc------CCCCcceEEEeCCCHHHHHHHHHHcCCcc----cCcHHHHHhhCCEEEEEe
Confidence 47999999999999999999999 7 378888887666556888888873 567889999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCc-EEEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEee
Q 012479 187 SDAAQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~ga-iL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav 265 (462)
||+...+++.++.+ ..+++ +|++++|+++..++. .+| +.+|+|+|||+|..+ |+|++. ++.
T Consensus 71 KPq~~~~vl~~l~~-~~~~~lvISiaAGv~~~~l~~---~l~-~~~vvR~MPNt~a~v------------g~g~t~-i~~ 132 (266)
T COG0345 71 KPQDLEEVLSKLKP-LTKDKLVISIAAGVSIETLER---LLG-GLRVVRVMPNTPALV------------GAGVTA-ISA 132 (266)
T ss_pred ChHhHHHHHHHhhc-ccCCCEEEEEeCCCCHHHHHH---HcC-CCceEEeCCChHHHH------------cCccee-eec
Confidence 99999999999999 66776 478999999998887 667 899999999999988 589999 677
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHH
Q 012479 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVEC 341 (462)
Q Consensus 266 ~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~pa----liea~~d~~v~~G~~~e~A~~~~~e~ 341 (462)
..++++++++.+.++++.+|.. .+.++++|+..|+++||+|+ ++|++.|++|+.|+|+++|++++.|+
T Consensus 133 ~~~~~~~~~~~v~~l~~~~G~v--------~~v~E~~~da~TaisGSgPAyv~~~iEal~~agv~~Gl~~~~A~~l~~~t 204 (266)
T COG0345 133 NANVSEEDKAFVEALLSAVGKV--------VEVEESLMDAVTALSGSGPAYVFLFIEALADAGVRLGLPREEARELAAQT 204 (266)
T ss_pred CccCCHHHHHHHHHHHHhcCCe--------EEechHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 8899999999999999999975 44556789999999999998 89999999999999999999999999
Q ss_pred HHHHHHHHHHHhcH--HHHHHhcCCc
Q 012479 342 ITGIISKIISTQGM--LAVYNSFSGE 365 (462)
Q Consensus 342 i~Gli~~li~e~G~--~~m~~~vs~~ 365 (462)
+.| .++|+.|+|. ..|+|+||.+
T Consensus 205 ~~G-aakll~e~~~~p~~Lr~~VtSP 229 (266)
T COG0345 205 VAG-AAKLLLESGEHPAELRDQVTSP 229 (266)
T ss_pred HHH-HHHHHHhcCCCHHHHHHhCcCC
Confidence 999 9999999999 7999999964
No 9
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=100.00 E-value=2.3e-32 Score=271.44 Aligned_cols=219 Identities=18% Similarity=0.277 Sum_probs=187.5
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc----EEEEEecCCchhHHHHH-HcCceecCCCcCCHhhhhccCCeEEEee
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEAR-AAGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~----~Vivg~r~~~~s~~~A~-~~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
+||+|||+|+||.+++++|.++ |+ +|++.+|+ .++.+.+. +.|+.. +.++.|++++||+|||++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~------g~~~~~~I~v~~r~-~~~~~~l~~~~g~~~----~~~~~e~~~~aDiIiLav 71 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINK------NIVSPDQIICSDLN-VSNLKNASDKYGITI----TTNNNEVANSADILILSI 71 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHC------CCCCCceEEEECCC-HHHHHHHHHhcCcEE----eCCcHHHHhhCCEEEEEe
Confidence 6899999999999999999988 64 56665554 34444444 478754 567888999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcE-EEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEee
Q 012479 187 SDAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gai-L~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav 265 (462)
||+...++++++.++++++++ |++++|+++..+++ .++...+|+|+|||+|... |+|++. ++.
T Consensus 72 kP~~~~~vl~~l~~~~~~~~lvISi~AGi~i~~l~~---~l~~~~~vvR~MPN~~~~v------------g~g~t~-~~~ 135 (272)
T PRK12491 72 KPDLYSSVINQIKDQIKNDVIVVTIAAGKSIKSTEN---EFDRKLKVIRVMPNTPVLV------------GEGMSA-LCF 135 (272)
T ss_pred ChHHHHHHHHHHHHhhcCCcEEEEeCCCCcHHHHHH---hcCCCCcEEEECCChHHHH------------cCceEE-EEe
Confidence 999999999999999998875 67999999988876 5555668999999999888 589999 567
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHH
Q 012479 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVEC 341 (462)
Q Consensus 266 ~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~pa----liea~~d~~v~~G~~~e~A~~~~~e~ 341 (462)
.++++.++++.+..+|+.+|.. .+..++.|+..|+|+||+|+ ++|++.|++++.|+|+++|.+++.|+
T Consensus 136 ~~~~~~~~~~~v~~lf~~~G~~--------~~~~E~~~d~~talsgsgPAf~~~~~eal~~a~v~~Gl~~~~A~~l~~~t 207 (272)
T PRK12491 136 NEMVTEKDIKEVLNIFNIFGQT--------EVVNEKLMDVVTSISGSSPAYVYMFIEAMADAAVLGGMPRKQAYKFAAQA 207 (272)
T ss_pred CCCCCHHHHHHHHHHHHcCCCE--------EEEcHHHhhhHHHhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 8899999999999999999964 23345578899999999998 89999999999999999999999999
Q ss_pred HHHHHHHHHHHhcH--HHHHHhcCCcc
Q 012479 342 ITGIISKIISTQGM--LAVYNSFSGED 366 (462)
Q Consensus 342 i~Gli~~li~e~G~--~~m~~~vs~~~ 366 (462)
+.| .++|+.++|. ..++|+|+.+.
T Consensus 208 ~~G-~a~ll~~~~~~p~~l~~~V~sPG 233 (272)
T PRK12491 208 VLG-SAKMVLETGIHPGELKDMVCSPG 233 (272)
T ss_pred HHH-HHHHHHhcCCCHHHHHHhCCCCc
Confidence 999 8999999988 89999999653
No 10
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.97 E-value=2.3e-29 Score=249.94 Aligned_cols=219 Identities=15% Similarity=0.196 Sum_probs=182.1
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCC----cEEEEEecCCchhHHH-HHHcC-ceecCCCcCCHhhhhccCCeEEE
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAE-ARAAG-FTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G----~~Vivg~r~~~~s~~~-A~~~G-~~~~d~~~~~~~eav~~ADvViL 184 (462)
|++|+|||+|+||.+++.+|+++ | .+|+++.++.....+. ....+ ... ..+..++++++|+||+
T Consensus 1 m~~I~iIG~G~mG~ala~~L~~~------g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~----~~~~~e~~~~aDvVil 70 (277)
T PRK06928 1 MEKIGFIGYGSMADMIATKLLET------EVATPEEIILYSSSKNEHFNQLYDKYPTVEL----ADNEAEIFTKCDHSFI 70 (277)
T ss_pred CCEEEEECccHHHHHHHHHHHHC------CCCCcccEEEEeCCcHHHHHHHHHHcCCeEE----eCCHHHHHhhCCEEEE
Confidence 57899999999999999999988 6 4677666654332222 22232 222 3577888999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCc-EEEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEE
Q 012479 185 LISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~ga-iL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~ali 263 (462)
++||+...++++++.+++++++ +|+++.|+++..+++ .+|. .+|||+|||+|... |+|++. +
T Consensus 71 avpp~~~~~vl~~l~~~l~~~~~ivS~~aGi~~~~l~~---~~~~-~~vvR~MPN~~~~~------------g~g~t~-~ 133 (277)
T PRK06928 71 CVPPLAVLPLLKDCAPVLTPDRHVVSIAAGVSLDDLLE---ITPG-LQVSRLIPSLTSAV------------GVGTSL-V 133 (277)
T ss_pred ecCHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcCC-CCEEEEeCccHHHH------------hhhcEE-E
Confidence 9999999999999999998886 577999999888876 4453 58999999999888 589998 5
Q ss_pred eeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHH----HHHHHHHHHHHc-CCCHHHHHHHH
Q 012479 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTEN-GMNEDLAYKNT 338 (462)
Q Consensus 264 av~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~pa----liea~~d~~v~~-G~~~e~A~~~~ 338 (462)
+...+++.++++.+..+|+.+|... +..+++|+..|+|+||+|+ +++++.|++++. |+++++|++++
T Consensus 134 ~~~~~~~~~~~~~v~~l~~~~G~~~--------~v~E~~~d~~tal~gsgPA~~~~~~~al~~a~~~~ggl~~~~a~~l~ 205 (277)
T PRK06928 134 AHAETVNEANKSRLEETLSHFSHVM--------TIREENMDIASNLTSSSPGFIAAIFEEFAEAAVRNSSLSDEEAFQFL 205 (277)
T ss_pred ecCCCCCHHHHHHHHHHHHhCCCEE--------EEchhhCceeeeeecCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 6688899999999999999999652 2234577888999999998 789999999999 79999999999
Q ss_pred HHHHHHHHHHHHHHhcH--HHHHHhcCCc
Q 012479 339 VECITGIISKIISTQGM--LAVYNSFSGE 365 (462)
Q Consensus 339 ~e~i~Gli~~li~e~G~--~~m~~~vs~~ 365 (462)
.|++.| .++|+.++|. ..++|+|+++
T Consensus 206 ~~~~~G-~a~l~~~~~~~p~~l~~~v~sp 233 (277)
T PRK06928 206 NFALAG-TGKLLVEEDYTFSGTIERVATK 233 (277)
T ss_pred HHHHHH-HHHHHHccCCCHHHHHHhCCCC
Confidence 999999 8999999886 9999999965
No 11
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=99.96 E-value=1.6e-28 Score=241.79 Aligned_cols=213 Identities=18% Similarity=0.260 Sum_probs=177.2
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc----EEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeec
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~----~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavp 187 (462)
+||+|||+|+||.+++++|+++ +. ++++.+++ .+. .++.. ..++.++++++|+|||++|
T Consensus 4 mkI~iIG~G~mG~ai~~~l~~~------~~~~~~~i~~~~~~-~~~------~~~~~----~~~~~~~~~~~D~Vilavk 66 (260)
T PTZ00431 4 IRVGFIGLGKMGSALAYGIENS------NIIGKENIYYHTPS-KKN------TPFVY----LQSNEELAKTCDIIVLAVK 66 (260)
T ss_pred CEEEEECccHHHHHHHHHHHhC------CCCCcceEEEECCC-hhc------CCeEE----eCChHHHHHhCCEEEEEeC
Confidence 7899999999999999999987 52 35554443 211 24432 4577888899999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeecc
Q 012479 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (462)
Q Consensus 188 d~a~~~vl~eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~q 267 (462)
|+...++++++.++++++.+|++++|+++..++. .++....++++|||.|... |+|++. +++.+
T Consensus 67 p~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~l~~---~~~~~~~vvr~mPn~p~~~------------g~g~t~-i~~~~ 130 (260)
T PTZ00431 67 PDLAGKVLLEIKPYLGSKLLISICGGLNLKTLEE---MVGVEAKIVRVMPNTPSLV------------GQGSLV-FCANN 130 (260)
T ss_pred HHHHHHHHHHHHhhccCCEEEEEeCCccHHHHHH---HcCCCCeEEEECCCchhHh------------cceeEE-EEeCC
Confidence 9999999999999988777889999999877765 4455557999999999655 357766 67788
Q ss_pred CCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 012479 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECIT 343 (462)
Q Consensus 268 d~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~pa----liea~~d~~v~~G~~~e~A~~~~~e~i~ 343 (462)
+++.+..+.+..+|+.+|.. .+.+++.|+..++++||+|+ +++++.|++++.|+++++|++++.|++.
T Consensus 131 ~~~~~~~~~v~~l~~~~G~~--------~~v~E~~~d~~ta~~gsgPA~~~~~~~al~~~~v~~Gl~~~~a~~l~~~~~~ 202 (260)
T PTZ00431 131 NVDSTDKKKVIDIFSACGII--------QEIKEKDMDIATAISGCGPAYVFLFIESLIDAGVKNGLNRDVSKNLVLQTIL 202 (260)
T ss_pred CCCHHHHHHHHHHHHhCCcE--------EEEChHHcchhhhhcCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 88999999999999999965 22334467888999999998 8999999999999999999999999999
Q ss_pred HHHHHHHHHhcH--HHHHHhcCCcc
Q 012479 344 GIISKIISTQGM--LAVYNSFSGED 366 (462)
Q Consensus 344 Gli~~li~e~G~--~~m~~~vs~~~ 366 (462)
| .++|+.++|. ..|+|+|+.+.
T Consensus 203 G-~a~ll~~~~~~~~~l~~~v~spg 226 (260)
T PTZ00431 203 G-SVHMVKASDQPVQQLKDDVCSPG 226 (260)
T ss_pred H-HHHHHHhcCCCHHHHHHhCCCCC
Confidence 9 8999999986 89999999653
No 12
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.95 E-value=1.5e-26 Score=229.38 Aligned_cols=219 Identities=13% Similarity=0.175 Sum_probs=180.1
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCC----cEEEEEecCCchh-HHHHHHcCceecCCCcCCHhhhhccCCeEEEee
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G----~~Vivg~r~~~~s-~~~A~~~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
+||+|||+|+||.+++++|.++ | .++++.+|..++. ...+.+.|+.. ..++.+++++||+||+++
T Consensus 4 mkI~~IG~G~mG~aia~~l~~~------g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~----~~~~~e~~~~aDvVilav 73 (279)
T PRK07679 4 QNISFLGAGSIAEAIIGGLLHA------NVVKGEQITVSNRSNETRLQELHQKYGVKG----THNKKELLTDANILFLAM 73 (279)
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCCCcceEEEECCCCHHHHHHHHHhcCceE----eCCHHHHHhcCCEEEEEe
Confidence 7999999999999999999988 6 4677777654433 33344567754 567888999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEE-EeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEee
Q 012479 187 SDAAQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~-~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav 265 (462)
||+.+.++++++.+.++++++|+ +++|+++..+.+ .++.+.+|+++|||.|... +.|++. ++.
T Consensus 74 ~p~~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~---~~~~~~~v~r~mPn~~~~~------------~~~~t~-~~~ 137 (279)
T PRK07679 74 KPKDVAEALIPFKEYIHNNQLIISLLAGVSTHSIRN---LLQKDVPIIRAMPNTSAAI------------LKSATA-ISP 137 (279)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcCCCCeEEEECCCHHHHH------------hcccEE-Eee
Confidence 99999999999999998888765 569998877765 4455678999999998777 368886 566
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHH
Q 012479 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVEC 341 (462)
Q Consensus 266 ~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~pa----liea~~d~~v~~G~~~e~A~~~~~e~ 341 (462)
..+.+.++++.++.+|..+|.. +.. . +++|+..++++|++|+ +++++.|.+++.|+++++|+....++
T Consensus 138 ~~~~~~~~~~~v~~l~~~~G~~--~~v---~---e~~~~~~~a~~Gsgpa~~~~~~eal~e~~~~~Gl~~~~a~~~~~~~ 209 (279)
T PRK07679 138 SKHATAEHIQTAKALFETIGLV--SVV---E---EEDMHAVTALSGSGPAYIYYVVEAMEKAAKKIGLKEDVAKSLILQT 209 (279)
T ss_pred CCCCCHHHHHHHHHHHHhCCcE--EEe---C---HHHhhhHHHhhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 7788899999999999999964 211 2 2357788899999997 88999999999999999999999999
Q ss_pred HHHHHHHHHHHhcH--HHHHHhcCCc
Q 012479 342 ITGIISKIISTQGM--LAVYNSFSGE 365 (462)
Q Consensus 342 i~Gli~~li~e~G~--~~m~~~vs~~ 365 (462)
+.| .++++.+++. ..+++.++++
T Consensus 210 ~~g-sa~~~~~~~~~~~~l~~~v~sp 234 (279)
T PRK07679 210 MIG-AAEMLKASEKHPSILRKEITSP 234 (279)
T ss_pred HHH-HHHHHHhcCCCHHHHHHhcCCC
Confidence 998 7899987665 8899999643
No 13
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.95 E-value=1.5e-26 Score=223.56 Aligned_cols=220 Identities=15% Similarity=0.187 Sum_probs=177.4
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCC---cE-EEEEecCCc-hhHHHHHHcCceecCCCcCCHhhhhccCCeEEEee
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD---IV-VKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G---~~-Vivg~r~~~-~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
+||+|||+|+||.+++.+|.+. + .+ +++..|++. +..+.+...|+.. ..+.+++++++|+|++++
T Consensus 5 ~kI~iIG~G~mg~ala~~l~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~DiViiav 74 (245)
T PRK07634 5 HRILFIGAGRMAEAIFSGLLKT------SKEYIEEIIVSNRSNVEKLDQLQARYNVST----TTDWKQHVTSVDTIVLAM 74 (245)
T ss_pred CeEEEECcCHHHHHHHHHHHhC------CCCCcCeEEEECCCCHHHHHHHHHHcCcEE----eCChHHHHhcCCEEEEec
Confidence 7899999999999999999877 5 23 555555443 3334444567653 467888999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeec
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~ 266 (462)
||+.+.++++++.++++...+|+.++|+++..++. .++.+..++++|||.+... |+|++.+ +..
T Consensus 75 p~~~~~~v~~~l~~~~~~~~vis~~~gi~~~~l~~---~~~~~~~v~r~~Pn~a~~v------------~~g~~~~-~~~ 138 (245)
T PRK07634 75 PPSAHEELLAELSPLLSNQLVVTVAAGIGPSYLEE---RLPKGTPVAWIMPNTAAEI------------GKSISLY-TMG 138 (245)
T ss_pred CHHHHHHHHHHHHhhccCCEEEEECCCCCHHHHHH---HcCCCCeEEEECCcHHHHH------------hcCCeEE-eeC
Confidence 99999999999998887444577999999888766 5566668999999998765 4789995 456
Q ss_pred cCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 012479 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECI 342 (462)
Q Consensus 267 qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~pa----liea~~d~~v~~G~~~e~A~~~~~e~i 342 (462)
.+.++++.+.+..+|+.+|.... ..| +.++..++++||+|+ +++++.|.+++.|+++++|++++.+++
T Consensus 139 ~~~~~~~~~~v~~lf~~~G~~~~-----~~e---~~~~~~~a~~gs~pa~~~~~~~a~~~~~~~~Gl~~~~a~~~~~~~~ 210 (245)
T PRK07634 139 QSVNETHKETLQLILKGIGTSQL-----CTE---EEVHQLTAVTGSAPAFLYYFAESLIEATKSYGVDEETAKHLVIQMI 210 (245)
T ss_pred CCCCHHHHHHHHHHHHhCCCEEE-----ECH---HHcchHHhhhcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 77899999999999999997521 122 345667899999997 899999999999999999999999999
Q ss_pred HHHHHHHHHHhc-HHHHHHhcCCcc
Q 012479 343 TGIISKIISTQG-MLAVYNSFSGED 366 (462)
Q Consensus 343 ~Gli~~li~e~G-~~~m~~~vs~~~ 366 (462)
.| .++++.+++ ...++|+|+.+.
T Consensus 211 ~g-~~~~~~~~~~~~~l~~~v~spg 234 (245)
T PRK07634 211 SG-SASMLEQTQDPANLREQVTTPG 234 (245)
T ss_pred HH-HHHHHhCCCCHHHHHHhCCCCC
Confidence 99 899998743 389999999643
No 14
>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=99.95 E-value=5e-27 Score=228.88 Aligned_cols=219 Identities=20% Similarity=0.258 Sum_probs=193.2
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc----EEEEEecCCchhHHH-HHHcCceecCCCcCCHhhhhccCCeEEEee
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAE-ARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~----~Vivg~r~~~~s~~~-A~~~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
++|||||.|+|..++++++..+ |+ +++.... ..++... .+..|... +.++.+.++.+|++++++
T Consensus 1 ~~~gfigag~ma~ala~g~~~~------Gi~~~~~i~~s~~-~~~~~~~~~~~~g~~~----~~~n~~~~~~s~v~~~sv 69 (267)
T KOG3124|consen 1 MKVGFIGAGNMAQALASGFVAS------GIIEANRIWASVQ-TERSLGLMFEALGVKT----VFTNLEVLQASDVVFLSV 69 (267)
T ss_pred CceeEechhhhHHHHHhccccc------CCCchhheeeecC-chhhhhhhhhcCCcee----eechHHHHhhccceeEee
Confidence 5799999999999999999988 76 4444443 4455555 78889875 567789999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcE-EEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEee
Q 012479 187 SDAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gai-L~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav 265 (462)
+|+.+..++.++.+.+..+++ ++.+.|+.+..+++ .++...+|||+|||+|... |+|+.+ ++.
T Consensus 70 Kp~~i~~vls~~~~~~~~~~iivS~aaG~tl~~l~~---~l~~~~rviRvmpNtp~~v------------~eg~sv-~~~ 133 (267)
T KOG3124|consen 70 KPQVIESVLSEIKPKVSKGKIIVSVAAGKTLSSLES---KLSPPTRVIRVMPNTPSVV------------GEGASV-YAI 133 (267)
T ss_pred cchhHHHHhhcCccccccceEEEEEeecccHHHHHH---hcCCCCceEEecCCChhhh------------hcCcEE-Eee
Confidence 999999999999988778876 57999999887776 5566778999999999887 589996 888
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHH
Q 012479 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVEC 341 (462)
Q Consensus 266 ~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~pa----liea~~d~~v~~G~~~e~A~~~~~e~ 341 (462)
..+++.++.+++..++..+|.. +|.++++++..|.|+|++|+ .+|++.|.+|+.|+||++||++++|+
T Consensus 134 g~~~~~~D~~l~~~ll~~vG~~--------~evpE~~iDavTgLsGSgPAy~f~~ieaLadGgVkmGlPr~lA~~laaqt 205 (267)
T KOG3124|consen 134 GCHATNEDLELVEELLSAVGLC--------EEVPEKCIDAVTGLSGSGPAYVFVAIEALADGGVKMGLPRQLAYRLAAQT 205 (267)
T ss_pred CCCcchhhHHHHHHHHHhcCcc--------eeCcHHhhhHHhhccCCcHHHHHHHHHHHhccccccCCCHHHHHHHHHHH
Confidence 9999999999999999999976 78888999999999999998 89999999999999999999999999
Q ss_pred HHHHHHHHHHHhcH--HHHHHhcCCcc
Q 012479 342 ITGIISKIISTQGM--LAVYNSFSGED 366 (462)
Q Consensus 342 i~Gli~~li~e~G~--~~m~~~vs~~~ 366 (462)
+.| .++|+.++|. ..|+|.||.|.
T Consensus 206 llG-AakMVl~s~qHP~~Lkd~V~SPg 231 (267)
T KOG3124|consen 206 LLG-AAKMVLASGQHPAQLKDDVCSPG 231 (267)
T ss_pred HHh-HHHHHHhccCCcHHHhCCCCCCC
Confidence 999 9999999998 99999999664
No 15
>PLN02688 pyrroline-5-carboxylate reductase
Probab=99.95 E-value=7.4e-26 Score=221.69 Aligned_cols=218 Identities=16% Similarity=0.219 Sum_probs=179.7
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc----EEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeec
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~----~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavp 187 (462)
+||+|||+|+||.+++++|+++ |+ +++++++++....+.+.+.|+.. ..++.++++++|+||+++|
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~------g~~~~~~i~v~~~r~~~~~~~~~~~g~~~----~~~~~e~~~~aDvVil~v~ 70 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVAS------GVVPPSRISTADDSNPARRDVFQSLGVKT----AASNTEVVKSSDVIILAVK 70 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHC------CCCCcceEEEEeCCCHHHHHHHHHcCCEE----eCChHHHHhcCCEEEEEEC
Confidence 5899999999999999999998 76 77777344444456667788864 5678889999999999999
Q ss_pred chhHHHHHHHHHhcCCCCcE-EEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeec
Q 012479 188 DAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (462)
Q Consensus 188 d~a~~~vl~eI~~~Lk~gai-L~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~ 266 (462)
|+...++++++.+.++++++ |++++|+++..+.. ..+.. +++++|||.|... |.+++. ++..
T Consensus 71 ~~~~~~vl~~l~~~~~~~~~iIs~~~g~~~~~l~~---~~~~~-~vvr~mP~~~~~~------------~~~~~~-l~~~ 133 (266)
T PLN02688 71 PQVVKDVLTELRPLLSKDKLLVSVAAGITLADLQE---WAGGR-RVVRVMPNTPCLV------------GEAASV-MSLG 133 (266)
T ss_pred cHHHHHHHHHHHhhcCCCCEEEEecCCCcHHHHHH---HcCCC-CEEEECCCcHHHH------------hCceEE-EEeC
Confidence 99999999999999988885 56889998766654 33333 7999999999876 356766 5567
Q ss_pred cCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 012479 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECI 342 (462)
Q Consensus 267 qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~pa----liea~~d~~v~~G~~~e~A~~~~~e~i 342 (462)
.+.+.+.++.++.+++.+|. ++.. .| +.|+..++++|++|+ +++++.|++++.|+++++|+....+++
T Consensus 134 ~~~~~~~~~~v~~l~~~~G~--~~~~---~e---~~~d~~~~~~g~g~a~~~~~~~a~~ea~~~~Gl~~~~a~~~~~~~~ 205 (266)
T PLN02688 134 PAATADDRDLVATLFGAVGK--IWVV---DE---KLLDAVTGLSGSGPAYIFLAIEALADGGVAAGLPRDVALSLAAQTV 205 (266)
T ss_pred CCCCHHHHHHHHHHHHhCCC--EEEe---CH---HHcchhHhhhcCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 77889999999999999995 2222 23 467777889999997 789999999999999999999999999
Q ss_pred HHHHHHHHHHhcH--HHHHHhcCCc
Q 012479 343 TGIISKIISTQGM--LAVYNSFSGE 365 (462)
Q Consensus 343 ~Gli~~li~e~G~--~~m~~~vs~~ 365 (462)
.| +++|+.++|. ..|+++|+.+
T Consensus 206 ~g-s~~l~~~~~~~~~~l~~~v~sp 229 (266)
T PLN02688 206 LG-AAKMVLETGKHPGQLKDMVTSP 229 (266)
T ss_pred HH-HHHHHHhcCCCHHHHHHhCCCC
Confidence 98 8999988887 8899999964
No 16
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.94 E-value=3.3e-25 Score=217.25 Aligned_cols=219 Identities=16% Similarity=0.217 Sum_probs=177.4
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCC---cEEEEEecCCchhHHHHHH-cCceecCCCcCCHhhhhccCCeEEEee
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD---IVVKVGLRKGSRSFAEARA-AGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G---~~Vivg~r~~~~s~~~A~~-~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
|++|+|||+|+||.+++..|.++ | .+|.+..|+.+ ..+...+ .|+.. ..+..++++++|+||+++
T Consensus 2 mm~I~iIG~G~mG~~la~~l~~~------g~~~~~v~v~~r~~~-~~~~~~~~~g~~~----~~~~~~~~~~advVil~v 70 (267)
T PRK11880 2 MKKIGFIGGGNMASAIIGGLLAS------GVPAKDIIVSDPSPE-KRAALAEEYGVRA----ATDNQEAAQEADVVVLAV 70 (267)
T ss_pred CCEEEEEechHHHHHHHHHHHhC------CCCcceEEEEcCCHH-HHHHHHHhcCCee----cCChHHHHhcCCEEEEEc
Confidence 47999999999999999999988 7 46766666543 3444444 47653 467788899999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeec
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~ 266 (462)
||..+.++++++.+++ +..+|++++|+++..++. .++.+.+++++|||.|... |.|++. +++.
T Consensus 71 ~~~~~~~v~~~l~~~~-~~~vvs~~~gi~~~~l~~---~~~~~~~iv~~~P~~p~~~------------~~~~~~-i~~~ 133 (267)
T PRK11880 71 KPQVMEEVLSELKGQL-DKLVVSIAAGVTLARLER---LLGADLPVVRAMPNTPALV------------GAGMTA-LTAN 133 (267)
T ss_pred CHHHHHHHHHHHHhhc-CCEEEEecCCCCHHHHHH---hcCCCCcEEEecCCchHHH------------cCceEE-EecC
Confidence 9999999999999887 344678999998766654 4455678999999998654 357765 6667
Q ss_pred cCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 012479 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECI 342 (462)
Q Consensus 267 qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~pa----liea~~d~~v~~G~~~e~A~~~~~e~i 342 (462)
.+.+.++++.+..+++.+|....+. .++.|+..++++|++|+ +++++.+.+++.|+|+++|.+++.+++
T Consensus 134 ~~~~~~~~~~v~~l~~~lG~~~~~~-------~e~~~d~~~a~~~~~pa~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~ 206 (267)
T PRK11880 134 ALVSAEDRELVENLLSAFGKVVWVD-------DEKQMDAVTAVSGSGPAYVFLFIEALADAGVKLGLPREQARKLAAQTV 206 (267)
T ss_pred CCCCHHHHHHHHHHHHhCCeEEEEC-------ChHhcchHHHHhcChHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 8889999999999999999642221 12367788999999996 889999999999999999999999999
Q ss_pred HHHHHHHHHHhcH--HHHHHhcCCc
Q 012479 343 TGIISKIISTQGM--LAVYNSFSGE 365 (462)
Q Consensus 343 ~Gli~~li~e~G~--~~m~~~vs~~ 365 (462)
.| .++++.+.|. ..++++|+.+
T Consensus 207 ~g-~~~~~~~~~~~~~~l~~~v~tp 230 (267)
T PRK11880 207 LG-AAKLLLESGEHPAELRDNVTSP 230 (267)
T ss_pred HH-HHHHHHhcCCCHHHHHHhCCCC
Confidence 99 8999998877 8899999953
No 17
>PRK07680 late competence protein ComER; Validated
Probab=99.94 E-value=4.4e-25 Score=218.13 Aligned_cols=218 Identities=15% Similarity=0.195 Sum_probs=174.0
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc----EEEEEecCCchhHHHHHHc-CceecCCCcCCHhhhhccCCeEEEee
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~----~Vivg~r~~~~s~~~A~~~-G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
++|+|||+|+||.+++.+|.++ |+ +|.+..|+..+....+.+. |+.. ..++.++++++|+||+++
T Consensus 1 m~I~iIG~G~mG~ala~~L~~~------g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~----~~~~~~~~~~aDiVilav 70 (273)
T PRK07680 1 MNIGFIGTGNMGTILIEAFLES------GAVKPSQLTITNRTPAKAYHIKERYPGIHV----AKTIEEVISQSDLIFICV 70 (273)
T ss_pred CEEEEECccHHHHHHHHHHHHC------CCCCcceEEEECCCHHHHHHHHHHcCCeEE----ECCHHHHHHhCCEEEEec
Confidence 4799999999999999999988 73 5666666543333333333 5653 467888899999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEE-EEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEee
Q 012479 187 SDAAQADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL-~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav 265 (462)
||+...++++++.++++++++| ++++|+++..++. .++ ..++++|||+|... +.|.+. ++.
T Consensus 71 ~p~~~~~vl~~l~~~l~~~~~iis~~ag~~~~~L~~---~~~--~~~~r~~p~~~~~~------------~~G~t~-~~~ 132 (273)
T PRK07680 71 KPLDIYPLLQKLAPHLTDEHCLVSITSPISVEQLET---LVP--CQVARIIPSITNRA------------LSGASL-FTF 132 (273)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcC--CCEEEECCChHHHH------------hhccEE-Eee
Confidence 9999999999999999888864 5777788777665 333 36999999988554 257876 445
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHH----HHHHHHHHHHH-cCCCHHHHHHHHHH
Q 012479 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG----IVESLFRRFTE-NGMNEDLAYKNTVE 340 (462)
Q Consensus 266 ~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~pa----liea~~d~~v~-~G~~~e~A~~~~~e 340 (462)
....+.+.++.+..++..+|.. .+..+++++..+.++|++|+ +++++.+.+++ .|+++++|+.++.+
T Consensus 133 g~~~~~~~~~~~~~ll~~~G~~--------~~i~e~~~~~~~~l~gs~pa~~~~~~~al~~~~~~~~Gl~~~~a~~~~~~ 204 (273)
T PRK07680 133 GSRCSEEDQQKLERLFSNISTP--------LVIEEDITRVSSDIVSCGPAFFSYLLQRFIDAAVEETNISKEEATTLASE 204 (273)
T ss_pred CCCCCHHHHHHHHHHHHcCCCE--------EEEChHhcchhhhhccchHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 6667888999999999999964 23334567777999999998 77999999998 89999999999999
Q ss_pred HHHHHHHHHHHHhcH--HHHHHhcCCcc
Q 012479 341 CITGIISKIISTQGM--LAVYNSFSGED 366 (462)
Q Consensus 341 ~i~Gli~~li~e~G~--~~m~~~vs~~~ 366 (462)
++.| .++|+.+++. ..|+|+|+.+.
T Consensus 205 ~~~G-~~~l~~~~~~~~~~l~~~v~spg 231 (273)
T PRK07680 205 MLIG-MGKLLEKGLYTLPTLQEKVCVKG 231 (273)
T ss_pred HHHH-HHHHHHhcCCCHHHHHHhCCCCC
Confidence 9999 7899998876 89999999643
No 18
>TIGR00112 proC pyrroline-5-carboxylate reductase. This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.
Probab=99.91 E-value=1.3e-23 Score=205.43 Aligned_cols=195 Identities=18% Similarity=0.268 Sum_probs=165.5
Q ss_pred EEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchhHHHHHHHHHhcCCCCcE-EEEeccchHHHhh
Q 012479 142 VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQ 220 (462)
Q Consensus 142 ~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a~~~vl~eI~~~Lk~gai-L~~a~G~~i~~~~ 220 (462)
+|+++.|+.++..+.+.+.|+.. ..++.++++++|+|||++||+.+.++++++.+.+.++++ |++++|+++..++
T Consensus 11 ~I~v~~R~~e~~~~l~~~~g~~~----~~~~~e~~~~aDiIiLaVkP~~i~~vl~~l~~~~~~~~~ivS~~agi~~~~l~ 86 (245)
T TIGR00112 11 DIIVINRSPEKLAALAKELGIVA----SSDAQEAVKEADVVFLAVKPQDLEEVLSELKSEKGKDKLLISIAAGVTLEKLS 86 (245)
T ss_pred eEEEEcCCHHHHHHHHHHcCcEE----eCChHHHHhhCCEEEEEeCHHHHHHHHHHHhhhccCCCEEEEecCCCCHHHHH
Confidence 67888776555455556678764 567888999999999999999999999999988877664 6799999998887
Q ss_pred hccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccc
Q 012479 221 SMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRS 300 (462)
Q Consensus 221 ~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~ 300 (462)
. .++.+.+++|+|||+|... |+|++. ++...+++.++.+.+..+|..+|.. + +..+
T Consensus 87 ~---~~~~~~~ivR~mPn~~~~~------------~~g~t~-~~~~~~~~~~~~~~v~~lf~~~G~~--~------~v~E 142 (245)
T TIGR00112 87 Q---LLGGTRRVVRVMPNTPAKV------------GAGVTA-IAANANVSEEDRALVLALFKAVGEV--V------ELPE 142 (245)
T ss_pred H---HcCCCCeEEEECCChHHHH------------hCCeEE-EecCCCCCHHHHHHHHHHHHhCCCE--E------EECH
Confidence 6 5566678999999999877 479999 6668889999999999999999965 1 2234
Q ss_pred cchhhhHhHHhHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcH--HHHHHhcCCc
Q 012479 301 DIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGM--LAVYNSFSGE 365 (462)
Q Consensus 301 dlfgeqtvL~G~~pa----liea~~d~~v~~G~~~e~A~~~~~e~i~Gli~~li~e~G~--~~m~~~vs~~ 365 (462)
+.|+..++|+||+|+ +++++.|++++.|+++++|.+++.|++.| .++|+.++|. ..++++|+.+
T Consensus 143 ~~~~~~talsgsgPA~~~~~~~al~~~~v~~Gl~~~~A~~lv~~~~~G-~a~l~~~~~~~~~~l~~~v~sp 212 (245)
T TIGR00112 143 ALMDAVTALSGSGPAYVFLFIEALADAGVKQGLPRELALELAAQTVKG-AAKLLEESGEHPALLKDQVTSP 212 (245)
T ss_pred HHcchHHhhccCcHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HHHHHHhcCCCHHHHHHcCCCC
Confidence 577888999999998 89999999999999999999999999999 8999998876 9999999964
No 19
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=99.91 E-value=8.6e-23 Score=200.07 Aligned_cols=215 Identities=16% Similarity=0.187 Sum_probs=163.6
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc---EEEEEecCCchhHHHHHHc-CceecCCCcCCHhhhhccCCeEEEeec
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~---~Vivg~r~~~~s~~~A~~~-G~~~~d~~~~~~~eav~~ADvViLavp 187 (462)
+||+|||+|+||.+++++|++. |+ .+.+..|+.++..+.+... |+.. +.++.++++++|+||+++|
T Consensus 1 m~IgiIG~G~mG~aia~~L~~~------g~~~~~i~v~~r~~~~~~~l~~~~~~~~~----~~~~~~~~~~aDvVilav~ 70 (258)
T PRK06476 1 MKIGFIGTGAITEAMVTGLLTS------PADVSEIIVSPRNAQIAARLAERFPKVRI----AKDNQAVVDRSDVVFLAVR 70 (258)
T ss_pred CeEEEECcCHHHHHHHHHHHhC------CCChheEEEECCCHHHHHHHHHHcCCceE----eCCHHHHHHhCCEEEEEeC
Confidence 4799999999999999999988 64 3455555444433344444 3543 5688889999999999999
Q ss_pred chhHHHHHHHHHhcCCCCcE-EEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeec
Q 012479 188 DAAQADNYEKIFSCMKPNSI-LGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (462)
Q Consensus 188 d~a~~~vl~eI~~~Lk~gai-L~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~ 266 (462)
|+...++++++. +++|++ |++++|+++..++. .++....++++|||.|... ++|++.+ +..
T Consensus 71 p~~~~~vl~~l~--~~~~~~vis~~ag~~~~~l~~---~~~~~~~~~r~~P~~~~a~------------~~g~t~~-~~~ 132 (258)
T PRK06476 71 PQIAEEVLRALR--FRPGQTVISVIAATDRAALLE---WIGHDVKLVRAIPLPFVAE------------RKGVTAI-YPP 132 (258)
T ss_pred HHHHHHHHHHhc--cCCCCEEEEECCCCCHHHHHH---HhCCCCCEEEECCCChhhh------------CCCCeEe-cCC
Confidence 999999998873 567775 67889999887765 4455578999999988775 3678874 322
Q ss_pred cCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 012479 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGII 346 (462)
Q Consensus 267 qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~paliea~~d~~v~~G~~~e~A~~~~~e~i~Gli 346 (462)
.+.++.+++.+|.... +.+|...|+|+..+...+..-.+++++.+.+++.|+|+++|++...+++.| .
T Consensus 133 -------~~~~~~l~~~lG~~~~----~~~e~~~d~~~a~~s~~a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~G-~ 200 (258)
T PRK06476 133 -------DPFVAALFDALGTAVE----CDSEEEYDLLAAASALMATYFGILETATGWLEEQGLKRQKARAYLAPLFAS-L 200 (258)
T ss_pred -------HHHHHHHHHhcCCcEE----ECChHhccceeehhccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-H
Confidence 2578999999997522 224666677766554333333599999999999999999999999999999 8
Q ss_pred HHH-HHHhcH--HHHHHhcCCcc
Q 012479 347 SKI-ISTQGM--LAVYNSFSGED 366 (462)
Q Consensus 347 ~~l-i~e~G~--~~m~~~vs~~~ 366 (462)
++| +.+++. ..|+|+|+.+.
T Consensus 201 ~~l~~~~~~~~~~~l~~~v~spg 223 (258)
T PRK06476 201 AQDAVRSTKTDFSALSREFSTKG 223 (258)
T ss_pred HHHHHhcCCCCHHHHHHhCCCCC
Confidence 888 577766 89999999653
No 20
>PRK06545 prephenate dehydrogenase; Validated
Probab=99.86 E-value=2.6e-20 Score=191.59 Aligned_cols=219 Identities=15% Similarity=0.095 Sum_probs=157.2
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCc-hhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchh
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~-~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a 190 (462)
++|+|||+|+||+++|++|++. |+++.+..+... .....+...|+. +....+.++++++||+||+|+|+..
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~------G~~v~i~~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~~~aDlVilavP~~~ 72 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAA------GPDVFIIGYDPSAAQLARALGFGVI--DELAADLQRAAAEADLIVLAVPVDA 72 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHhcCCCC--cccccCHHHHhcCCCEEEEeCCHHH
Confidence 4799999999999999999999 887666554432 223333334444 2234567889999999999999999
Q ss_pred HHHHHHHHHh-cCCCCcEEEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeeccCC
Q 012479 191 QADNYEKIFS-CMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (462)
Q Consensus 191 ~~~vl~eI~~-~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~qd~ 269 (462)
..++++++.+ .++++.+|+++++++....+.....++...+||..||+ +|... ..+..+...++.|.++++++.++.
T Consensus 73 ~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HPM-aG~e~-sG~~aa~~~lf~g~~~il~~~~~~ 150 (359)
T PRK06545 73 TAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHPM-AGSHK-SGVAAARADLFENAPWVLTPDDHT 150 (359)
T ss_pred HHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCCc-CcCch-hhHHHhcHHHHCCCcEEEecCCCC
Confidence 9999999998 48999999999999753222111123556789999995 23321 112222222334788889999999
Q ss_pred CHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Q 012479 270 DGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKI 349 (462)
Q Consensus 270 tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~paliea~~d~~v~~G~~~e~A~~~~~e~i~Gli~~l 349 (462)
+.++++.++.+++.+|+. ++..+.++ .+..+++.+.+|.++-..+ +...|.+++.++.++.+.+.+ ++++
T Consensus 151 ~~~~~~~v~~l~~~lGa~-~v~~~~~~------HD~~~A~vshlPh~ia~al--~~~~~~~~~~~~~la~~gfrd-~tRi 220 (359)
T PRK06545 151 DPDAVAELKDLLSGTGAK-FVVLDAEE------HDRAVALVSHLPHILASSL--AARLAGEHPLALRLAAGGFRD-ITRI 220 (359)
T ss_pred CHHHHHHHHHHHHHcCCE-EEECCHHH------HhHHHhHhccHHHHHHHHH--HHhhccCchHHHhhhcccccC-Cccc
Confidence 999999999999999974 33343333 3466888999999766544 566688889999988888876 5655
Q ss_pred H
Q 012479 350 I 350 (462)
Q Consensus 350 i 350 (462)
.
T Consensus 221 a 221 (359)
T PRK06545 221 A 221 (359)
T ss_pred c
Confidence 5
No 21
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=99.83 E-value=6.2e-19 Score=176.41 Aligned_cols=195 Identities=16% Similarity=0.199 Sum_probs=155.3
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEE-EEEecCCchhHHHHHHcCceecCCCcCCH-hhhhccCCeEEEeecch
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVV-KVGLRKGSRSFAEARAAGFTEENGTLGDI-YETISGSDLVLLLISDA 189 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~V-ivg~r~~~~s~~~A~~~G~~~~d~~~~~~-~eav~~ADvViLavpd~ 189 (462)
++|+|||+|+||+++|+.|+.. |+.+ +++.+.+..+.+.+.+.|+.. +...+. .+++.+||+||++||..
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~------g~~v~i~g~d~~~~~~~~a~~lgv~d--~~~~~~~~~~~~~aD~VivavPi~ 75 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEA------GLVVRIIGRDRSAATLKAALELGVID--ELTVAGLAEAAAEADLVIVAVPIE 75 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHc------CCeEEEEeecCcHHHHHHHhhcCccc--ccccchhhhhcccCCEEEEeccHH
Confidence 7999999999999999999999 9876 556666666778888888873 322333 67888999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeccchHHHhhhccccCCCCccEEecccCCCch-hhHHhhhcCccccCCCceEEEeeccC
Q 012479 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGP-SVRRLYVQGKEINGAGINSSFAVHQD 268 (462)
Q Consensus 190 a~~~vl~eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~-~vr~lf~~G~~~~G~Gv~aliav~qd 268 (462)
+..++++++.|++++|++|+|..+++-..++.-....|++++||..||+. |+ ....+|+ +..+++|+.+.
T Consensus 76 ~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~~~vg~HPM~-G~~~~~~lf~--------~~~~vltp~~~ 146 (279)
T COG0287 76 ATEEVLKELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDVRFVGGHPMF-GPEADAGLFE--------NAVVVLTPSEG 146 (279)
T ss_pred HHHHHHHHhcccCCCCCEEEecccccHHHHHHHHHhccCCCeeEecCCCC-CCcccccccC--------CCEEEEcCCCC
Confidence 99999999999999999999999996432222122556656999999984 43 3444554 68999999998
Q ss_pred CCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHHHHHHHHHHHHHcCC
Q 012479 269 VDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGM 329 (462)
Q Consensus 269 ~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~paliea~~d~~v~~G~ 329 (462)
.+.+.++.++++|+++|+ +++.++.++|++.- +.+++.-+.+..++...+-+.+.
T Consensus 147 ~~~~~~~~~~~~~~~~ga-~~v~~~~eeHD~~~-----a~vshLpH~~a~al~~~~~~~~~ 201 (279)
T COG0287 147 TEKEWVEEVKRLWEALGA-RLVEMDAEEHDRVM-----AAVSHLPHAAALALANALAKLET 201 (279)
T ss_pred CCHHHHHHHHHHHHHcCC-EEEEcChHHHhHHH-----HHHHHHHHHHHHHHHHHHHhcCc
Confidence 889999999999999995 78889999998542 44566666777788777777666
No 22
>PRK08655 prephenate dehydrogenase; Provisional
Probab=99.78 E-value=2.4e-17 Score=174.20 Aligned_cols=249 Identities=16% Similarity=0.116 Sum_probs=173.1
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchh
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a 190 (462)
|||+||| +|+||.++|+.|++. |++|++..++.+...+.+.+.|+.. ..+..++++++|+||+++|+..
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~------G~~V~v~~r~~~~~~~~a~~~gv~~----~~~~~e~~~~aDvVIlavp~~~ 70 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEK------GFEVIVTGRDPKKGKEVAKELGVEY----ANDNIDAAKDADIVIISVPINV 70 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHC------CCEEEEEECChHHHHHHHHHcCCee----ccCHHHHhccCCEEEEecCHHH
Confidence 5899997 899999999999998 8888877766544456677778753 4577889999999999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEeccch---HHHhhhccccCCCCccEEecccCC-CchhhHHhhhcCccccCCCceEEEeec
Q 012479 191 QADNYEKIFSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKG-MGPSVRRLYVQGKEINGAGINSSFAVH 266 (462)
Q Consensus 191 ~~~vl~eI~~~Lk~gaiL~~a~G~~---i~~~~~~~i~~p~~v~VV~v~Png-pg~~vr~lf~~G~~~~G~Gv~aliav~ 266 (462)
..++++++.++++++++|+++++++ +..+.+ .+|++++||+.||+. |... .| .|..+++++.
T Consensus 71 ~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~---~~~~~~~~V~~HPmaGp~~~---~~--------~g~~~il~p~ 136 (437)
T PRK08655 71 TEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEE---YAPEGVEILPTHPMFGPRTP---SL--------KGQVVILTPT 136 (437)
T ss_pred HHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHH---hcCCCCEEEEcCCCCCCCCc---cc--------CCCEEEEecC
Confidence 9999999999999999999988764 233333 456678999999973 4322 33 3567778888
Q ss_pred cCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhH-HhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-
Q 012479 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGIL-LGAVHGIVESLFRRFTENGMNEDLAYKNTVECITG- 344 (462)
Q Consensus 267 qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL-~G~~paliea~~d~~v~~G~~~e~A~~~~~e~i~G- 344 (462)
.+.+.++.+.+.+++..+|+ +++.++.++|++. .+. ++.-+.+.-++..++.+.|++++.+..++.-...-
T Consensus 137 ~~~~~~~~~~v~~ll~~~G~-~v~~~~~e~HD~~------~a~vs~lph~~a~al~~~l~~~g~~~~~~~~~a~~~frd~ 209 (437)
T PRK08655 137 EKRSNPWFDKVKNFLEKEGA-RVIVTSPEEHDRI------MSVVQGLTHFAYISIASTLKRLGVDIKESRKFASPIYELM 209 (437)
T ss_pred CCCCHHHHHHHHHHHHHcCC-EEEECCHHHHHHH------HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhcChhhHHH
Confidence 87888999999999999996 4666666666532 333 44444566777788888899998887654432221
Q ss_pred --HHHHHHHHhcHHHHHHhcCCcchhhhchhhccCchhHHHHHHHHHHhccCChhh
Q 012479 345 --IISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEI 398 (462)
Q Consensus 345 --li~~li~e~G~~~m~~~vs~~~~aeyg~~~~~~~~~~~~~m~e~~~~i~~G~fa 398 (462)
+++++. ++-..|+..+.-.++ |-. ...+...+.+.++-+.|++|++-
T Consensus 210 ~~~~tRIa--~~~p~lw~dI~~~N~--~~~---~~l~~~~~~l~~l~~~l~~~D~~ 258 (437)
T PRK08655 210 IDIIGRIL--GQNPYLYASIQMNNP--QIP---EIHETFIKECEELSELVKNGDRE 258 (437)
T ss_pred HHHHHHHh--cCCHHHHHHHHHhCH--HHH---HHHHHHHHHHHHHHHHHHcCCHH
Confidence 011111 222556665542232 110 11133444666666667666543
No 23
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=99.78 E-value=1.1e-17 Score=166.35 Aligned_cols=191 Identities=16% Similarity=0.136 Sum_probs=138.3
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchhH
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a~ 191 (462)
+||+|||+|+||+++|+.|++. |++|+++++ +....+.+.+.|... . ..+..+++++||+||+|+|+...
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~------g~~V~~~d~-~~~~~~~a~~~g~~~--~-~~~~~~~~~~aDlVilavp~~~~ 70 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSL------GHTVYGVSR-RESTCERAIERGLVD--E-ASTDLSLLKDCDLVILALPIGLL 70 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHC------CCEEEEEEC-CHHHHHHHHHCCCcc--c-ccCCHhHhcCCCEEEEcCCHHHH
Confidence 5899999999999999999998 888766554 455677787788652 1 22333578999999999999999
Q ss_pred HHHHHHHHhcCCCCcEEEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeeccCCCH
Q 012479 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDG 271 (462)
Q Consensus 192 ~~vl~eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~qd~tg 271 (462)
.++++++.++++++.+|+++++++....+. ..+....||+.||+.... ...+..+..++..|.++++++.++.+.
T Consensus 71 ~~~~~~l~~~l~~~~ii~d~~Svk~~~~~~---~~~~~~~~v~~HPm~G~~--~~g~~~a~~~lf~g~~~~l~p~~~~~~ 145 (279)
T PRK07417 71 LPPSEQLIPALPPEAIVTDVGSVKAPIVEA---WEKLHPRFVGSHPMAGTA--ESGVEAGQRGLFKNRPWVLTPTENTDL 145 (279)
T ss_pred HHHHHHHHHhCCCCcEEEeCcchHHHHHHH---HHHhhCCceeeCCcCCCC--cchHHHhhHHHhCCCcEEEccCCCCCH
Confidence 999999999999999999999997544432 111112599999963211 011222222334578999999999999
Q ss_pred HHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHHHHH-HHHHHH
Q 012479 272 RATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVE-SLFRRF 324 (462)
Q Consensus 272 ea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~palie-a~~d~~ 324 (462)
++++.++.+++.+|. .+++.+.++|+ ....+++.+|.++- ++....
T Consensus 146 ~~~~~v~~l~~~lG~-~~v~~~~~~hD------~~~a~~shlp~~~a~~l~~~~ 192 (279)
T PRK07417 146 NALAIVEELAVSLGS-KIYTADPEEHD------RAVALISHLPVMVSAALIQTC 192 (279)
T ss_pred HHHHHHHHHHHHcCC-EEEEcCHHHHH------HHHHHHcchHHHHHHHHHHHH
Confidence 999999999999996 45555544444 44667788887655 333333
No 24
>PRK08507 prephenate dehydrogenase; Validated
Probab=99.78 E-value=2.1e-17 Score=163.68 Aligned_cols=194 Identities=17% Similarity=0.143 Sum_probs=137.6
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecch
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~ 189 (462)
+||+|||+|+||.++|++|++. |+ +|++ ++.+....+.+.+.|+... ..+..++. ++|+||+++|+.
T Consensus 1 m~I~iIG~G~mG~sla~~l~~~------g~~~~v~~-~d~~~~~~~~~~~~g~~~~---~~~~~~~~-~aD~Vilavp~~ 69 (275)
T PRK08507 1 MKIGIIGLGLMGGSLGLALKEK------GLISKVYG-YDHNELHLKKALELGLVDE---IVSFEELK-KCDVIFLAIPVD 69 (275)
T ss_pred CEEEEEccCHHHHHHHHHHHhc------CCCCEEEE-EcCCHHHHHHHHHCCCCcc---cCCHHHHh-cCCEEEEeCcHH
Confidence 4899999999999999999988 75 5544 4444555677778887521 34666765 599999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeccchHHHhhhccccCCCCccEEecccCC------CchhhHHhhhcCccccCCCceEEE
Q 012479 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKG------MGPSVRRLYVQGKEINGAGINSSF 263 (462)
Q Consensus 190 a~~~vl~eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Png------pg~~vr~lf~~G~~~~G~Gv~ali 263 (462)
.+.++++++.+ ++++++|++++..+....+. +.--...+||+.||+. |.....++|+ |.++++
T Consensus 70 ~~~~~~~~l~~-l~~~~iv~d~gs~k~~i~~~--~~~~~~~~~v~~hPmaG~e~~Gp~~a~~~l~~--------g~~~il 138 (275)
T PRK08507 70 AIIEILPKLLD-IKENTTIIDLGSTKAKIIES--VPKHIRKNFIAAHPMAGTENSGPKAAIKGLYE--------GKVVVL 138 (275)
T ss_pred HHHHHHHHHhc-cCCCCEEEECccchHHHHHH--HHHhcCCCEEecCCcCcCchhhHHhccHHHhC--------CCeEEE
Confidence 99999999999 99999999877764322211 0000125799999984 4455445554 677878
Q ss_pred eeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHHHHHHHHHHHHHcCCCHHHH
Q 012479 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLA 334 (462)
Q Consensus 264 av~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~paliea~~d~~v~~G~~~e~A 334 (462)
++.++.+.++++.++.+++.+|. ++++++.++|++.- +.+++.-+.+..++.+.+. .+.+++..
T Consensus 139 ~~~~~~~~~~~~~v~~l~~~~G~-~~~~~~~~~hD~~~-----a~vs~lph~~a~~l~~~~~-~~~~~~~~ 202 (275)
T PRK08507 139 CDVEKSGEKHQERAKEIFSGLGM-RIVYMDAKEHDLHA-----AYISHLPHIISFALANTVL-KEEDERNI 202 (275)
T ss_pred ecCCCCCHHHHHHHHHHHHHhCC-EEEEeCHHHHHHHH-----HHHhHHHHHHHHHHHHHHH-hcCChHHH
Confidence 88888888999999999999996 56667666655321 2235554556666666664 45655543
No 25
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=99.76 E-value=4.9e-17 Score=163.39 Aligned_cols=186 Identities=18% Similarity=0.220 Sum_probs=139.9
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecch
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~ 189 (462)
++|+|||+|+||.++|+.|++. |+ +|++.++ +....+.+++.|+.. ....+.+++++++|+||+++|+.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~------g~~~~V~~~dr-~~~~~~~a~~~g~~~--~~~~~~~~~~~~aDvViiavp~~ 77 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRL------GLAGEIVGADR-SAETRARARELGLGD--RVTTSAAEAVKGADLVILCVPVG 77 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc------CCCcEEEEEEC-CHHHHHHHHhCCCCc--eecCCHHHHhcCCCEEEECCCHH
Confidence 7999999999999999999988 75 6665555 445567777788641 12456778899999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeccchHHHhhhccccCCCCccEEecccCC------CchhhHHhhhcCccccCCCceEEE
Q 012479 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKG------MGPSVRRLYVQGKEINGAGINSSF 263 (462)
Q Consensus 190 a~~~vl~eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Png------pg~~vr~lf~~G~~~~G~Gv~ali 263 (462)
...++++++.++++++.+|+++++++....+......+.+++||..||.. |+....++|. |.++++
T Consensus 78 ~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~~~~v~~hPm~g~e~~G~~~a~~~l~~--------g~~~~l 149 (307)
T PRK07502 78 ASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPEGVHFIPGHPLAGTEHSGPDAGFAELFE--------NRWCIL 149 (307)
T ss_pred HHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhCCCCCeEEeCCCCCCCcccchhhcCHHHHC--------CCeEEE
Confidence 99999999999999999999998876433221111345677899999974 2333345554 678888
Q ss_pred eeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHHHHHHHH
Q 012479 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLF 321 (462)
Q Consensus 264 av~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~paliea~~ 321 (462)
++....+.++++.++.++..+|.. ++..+.++| +.++++++.+|.++-.++
T Consensus 150 ~~~~~~~~~~~~~~~~l~~~lG~~-~~~~~~~~h------D~~~A~~s~lph~~a~~l 200 (307)
T PRK07502 150 TPPEGTDPAAVARLTAFWRALGAR-VEEMDPEHH------DLVLAITSHLPHLIAYTI 200 (307)
T ss_pred eCCCCCCHHHHHHHHHHHHHcCCE-EEEcCHHHH------hHHHHHHhhHHHHHHHHH
Confidence 888888889999999999999974 444443344 366888999998765554
No 26
>PLN02256 arogenate dehydrogenase
Probab=99.72 E-value=2.4e-16 Score=159.49 Aligned_cols=167 Identities=16% Similarity=0.130 Sum_probs=128.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhh-ccCCeEEEeec
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLIS 187 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav-~~ADvViLavp 187 (462)
++ ++|+|||+|+||+++|+.|++. |.+|++.++.. ..+.+.+.|+.. ..+.++++ .++|+||+|+|
T Consensus 35 ~~-~kI~IIG~G~mG~slA~~L~~~------G~~V~~~d~~~--~~~~a~~~gv~~----~~~~~e~~~~~aDvVilavp 101 (304)
T PLN02256 35 RK-LKIGIVGFGNFGQFLAKTFVKQ------GHTVLATSRSD--YSDIAAELGVSF----FRDPDDFCEEHPDVVLLCTS 101 (304)
T ss_pred CC-CEEEEEeeCHHHHHHHHHHHhC------CCEEEEEECcc--HHHHHHHcCCee----eCCHHHHhhCCCCEEEEecC
Confidence 44 7999999999999999999988 88877666553 246677778764 46777776 47999999999
Q ss_pred chhHHHHHHHH-HhcCCCCcEEEEeccch---HHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEE
Q 012479 188 DAAQADNYEKI-FSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (462)
Q Consensus 188 d~a~~~vl~eI-~~~Lk~gaiL~~a~G~~---i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~ali 263 (462)
+....++++++ .++++++++|+++++++ +..+.. .+|.+.+||++|||.+...-...| ++.+.++
T Consensus 102 ~~~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~---~l~~~~~~V~~HPmaG~e~~~~~~--------~~~~~~~ 170 (304)
T PLN02256 102 ILSTEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQ---VLPEEFDILCTHPMFGPESGKGGW--------AGLPFVY 170 (304)
T ss_pred HHHHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHH---hCCCCCeEEecCCCCCCCCCcccc--------CCCeEEE
Confidence 99999999998 68899999999888864 334433 456678899999997444321222 3566666
Q ss_pred eec----cCCCHHHHHHHHHHHHHhCCCcccccchhhhccc
Q 012479 264 AVH----QDVDGRATNVALGWSVALGSPFTFATTLEQEYRS 300 (462)
Q Consensus 264 av~----qd~tgea~e~a~al~~aiG~~~viettf~~E~~~ 300 (462)
++. .+.++++++.++.+++.+|+ ++++++.++|++.
T Consensus 171 ~~~~i~~~~~~~~~~~~l~~l~~~lGa-~v~~~~~eeHD~~ 210 (304)
T PLN02256 171 DKVRIGDEGEREARCERFLDIFEEEGC-RMVEMSCEEHDRY 210 (304)
T ss_pred ecceecCCCCCHHHHHHHHHHHHHCCC-EEEEeCHHHHhHH
Confidence 543 45677899999999999996 7888999999855
No 27
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=99.71 E-value=3.5e-16 Score=174.15 Aligned_cols=221 Identities=16% Similarity=0.163 Sum_probs=159.9
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecch
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~ 189 (462)
+||+|||+|+||.++++.|+.. |+ +|++.+++ ....+.+.+.|+.. ....+..++++++|+||+++|++
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~------G~~~~V~~~d~~-~~~~~~a~~~g~~~--~~~~~~~~~~~~aDvVilavp~~ 74 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRER------GLAREVVAVDRR-AKSLELAVSLGVID--RGEEDLAEAVSGADVIVLAVPVL 74 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhc------CCCCEEEEEECC-hhHHHHHHHCCCCC--cccCCHHHHhcCCCEEEECCCHH
Confidence 7899999999999999999988 73 66555544 44567777788751 12456788899999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeccch---HHHhhhccccCCC-CccEEecccCC-C-----chhhHHhhhcCccccCCCc
Q 012479 190 AQADNYEKIFSCMKPNSILGLSHGFL---LGHLQSMGLDFPK-NIGVIAVCPKG-M-----GPSVRRLYVQGKEINGAGI 259 (462)
Q Consensus 190 a~~~vl~eI~~~Lk~gaiL~~a~G~~---i~~~~~~~i~~p~-~v~VV~v~Png-p-----g~~vr~lf~~G~~~~G~Gv 259 (462)
...++++++.++++++.+|+++++++ +..+++ .++. .++++..||+. + ......+|. |.
T Consensus 75 ~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~---~~~~~~~r~~~~hPm~G~~~~g~~~a~~~l~~--------~~ 143 (735)
T PRK14806 75 AMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARA---VFGELPAGFVPGHPIAGSEKSGVHAANADLFR--------NH 143 (735)
T ss_pred HHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHH---hccccCCeEEecCCcCcCCcchhhhhhhHHhC--------CC
Confidence 99999999999999999999999986 444433 2322 34555566642 1 112234454 56
Q ss_pred eEEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHH-HHHHHHHHHHHcCCCHHHHHHHH
Q 012479 260 NSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-IVESLFRRFTENGMNEDLAYKNT 338 (462)
Q Consensus 260 ~aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~pa-liea~~d~~v~~G~~~e~A~~~~ 338 (462)
++++++..+.+.++.+.++.+++.+|.. ++..+ + +.++..++++|++|+ +.-++.+.+.+.|... .+++++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~l~~~~G~~-~~~~~---~---~~hD~~~a~~~~~ph~~~~~l~~~l~~~~~~~-~~~~~a 215 (735)
T PRK14806 144 KVILTPLAETDPAALARVDRLWRAVGAD-VLHMD---V---AHHDEVLAATSHLPHLLAFSLVDQLANREDNL-DIFRYA 215 (735)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHcCCE-EEEcC---H---HHHhHHHHHhcchHHHHHHHHHHHHhhcCChh-HHHhhh
Confidence 7778888889999999999999999963 33332 2 245577899999998 7778888888877644 678888
Q ss_pred HHHHHHHHHHHHHHhcHHHHHHhc
Q 012479 339 VECITGIISKIISTQGMLAVYNSF 362 (462)
Q Consensus 339 ~e~i~Gli~~li~e~G~~~m~~~v 362 (462)
.+.+.+ ++++. .+.-...+|.+
T Consensus 216 ~~~f~~-~tRia-~~~p~~~~di~ 237 (735)
T PRK14806 216 AGGFRD-FTRIA-ASDPVMWHDIF 237 (735)
T ss_pred ccchhc-ccccc-cCCHHHHHHHH
Confidence 888876 56665 33333344444
No 28
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=99.71 E-value=2e-16 Score=156.12 Aligned_cols=192 Identities=19% Similarity=0.190 Sum_probs=130.2
Q ss_pred HHHHHHHhhhhhcCC--cEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchhHHHHHHHHHhcCC
Q 012479 126 QAQNLRDSLAEAKSD--IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMK 203 (462)
Q Consensus 126 iA~~Lrds~~~~g~G--~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a~~~vl~eI~~~Lk 203 (462)
+|+.|+++ | ++ +++.+.+....+.|++.|+.. .. .+..++++++|+||||+|+....++++++.|+++
T Consensus 1 ~A~aL~~~------g~~~~-v~g~d~~~~~~~~a~~~g~~~--~~-~~~~~~~~~~DlvvlavP~~~~~~~l~~~~~~~~ 70 (258)
T PF02153_consen 1 IALALRKA------GPDVE-VYGYDRDPETLEAALELGIID--EA-STDIEAVEDADLVVLAVPVSAIEDVLEEIAPYLK 70 (258)
T ss_dssp HHHHHHHT------TTTSE-EEEE-SSHHHHHHHHHTTSSS--EE-ESHHHHGGCCSEEEE-S-HHHHHHHHHHHHCGS-
T ss_pred ChHHHHhC------CCCeE-EEEEeCCHHHHHHHHHCCCee--ec-cCCHhHhcCCCEEEEcCCHHHHHHHHHHhhhhcC
Confidence 58889988 7 45 457777788899999999974 22 2336789999999999999999999999999999
Q ss_pred CCcEEEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHH
Q 012479 204 PNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA 283 (462)
Q Consensus 204 ~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~a 283 (462)
+|++|+|+++++....+.-.-.+|.+++||.+||+. |+. ++.|......++.|.++++|+..+.+.++++.++++++.
T Consensus 71 ~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~HPM~-G~e-~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~ 148 (258)
T PF02153_consen 71 PGAIVTDVGSVKAPIVEAMERLLPEGVRFVGGHPMA-GPE-KSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEA 148 (258)
T ss_dssp TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEEEESC-STS-SSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHH
T ss_pred CCcEEEEeCCCCHHHHHHHHHhcCcccceeecCCCC-CCc-cccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHH
Confidence 999999999996322211112456789999999972 331 123333334445689999999999888999999999999
Q ss_pred hCCCcccccchhhhccccchhhhHhHHhHHHHHHHHHHHHHHHcCCCHHHHH
Q 012479 284 LGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAY 335 (462)
Q Consensus 284 iG~~~viettf~~E~~~dlfgeqtvL~G~~paliea~~d~~v~~G~~~e~A~ 335 (462)
+|+ +++.++.++|++.- +.+++.-+.+.-++...+.+.+.+.+...
T Consensus 149 ~Ga-~~~~~~~eeHD~~~-----A~vshlpH~~a~al~~~~~~~~~~~~~~~ 194 (258)
T PF02153_consen 149 LGA-RVVEMDAEEHDRIM-----AYVSHLPHLLASALANTLAELSSDDPDIL 194 (258)
T ss_dssp CT--EEEE--HHHHHHHH-----HHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCC-EEEEcCHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 997 68888999998653 33444444556666665654444443333
No 29
>PRK08818 prephenate dehydrogenase; Provisional
Probab=99.68 E-value=1.8e-15 Score=156.92 Aligned_cols=153 Identities=14% Similarity=0.090 Sum_probs=117.4
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchh
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a 190 (462)
+||+|||+ |+||+++|+.|++. .+++|+ +.++. |....+.++++++||+||||+|+..
T Consensus 5 ~~I~IIGl~GliGgslA~alk~~-----~~~~V~-g~D~~---------------d~~~~~~~~~v~~aDlVilavPv~~ 63 (370)
T PRK08818 5 PVVGIVGSAGAYGRWLARFLRTR-----MQLEVI-GHDPA---------------DPGSLDPATLLQRADVLIFSAPIRH 63 (370)
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-----CCCEEE-EEcCC---------------ccccCCHHHHhcCCCEEEEeCCHHH
Confidence 79999999 99999999999974 166664 55432 1113467788999999999999999
Q ss_pred HHHHHHHHHhc---CCCCcEEEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeecc
Q 012479 191 QADNYEKIFSC---MKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (462)
Q Consensus 191 ~~~vl~eI~~~---Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~q 267 (462)
..++++++.++ +++|++|+|+++++-.-.+. ..+...+||+.||+. |+....+| +|.++++|+..
T Consensus 64 ~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~---~~~~~~~fVG~HPMa-G~E~s~lf--------~g~~~iltp~~ 131 (370)
T PRK08818 64 TAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAA---MLASQAEVVGLHPMT-APPKSPTL--------KGRVMVVCEAR 131 (370)
T ss_pred HHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHH---HHhcCCCEEeeCCCC-CCCCCccc--------CCCeEEEeCCC
Confidence 99999999876 89999999999997433222 123356799999974 44322344 47899888764
Q ss_pred CCCHHHHHHHHHHHHHhCCCcccccchhhhccc
Q 012479 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRS 300 (462)
Q Consensus 268 d~tgea~e~a~al~~aiG~~~viettf~~E~~~ 300 (462)
..+..+.++.|++.+|+ ++++++.++|++.
T Consensus 132 --~~~~~~~v~~l~~~~Ga-~v~~~~aeeHD~~ 161 (370)
T PRK08818 132 --LQHWSPWVQSLCSALQA-ECVYATPEHHDRV 161 (370)
T ss_pred --chhHHHHHHHHHHHcCC-EEEEcCHHHHHHH
Confidence 34557889999999996 6888999999855
No 30
>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional
Probab=99.62 E-value=5.3e-14 Score=144.67 Aligned_cols=252 Identities=12% Similarity=0.139 Sum_probs=158.6
Q ss_pred CEEEEEcccch--------------------HHHHHHHHHHhhhhhcCCcEEEEEecCCch----hHHHHHHcCceecCC
Q 012479 112 NQIGVIGWGSQ--------------------GPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFAEARAAGFTEENG 167 (462)
Q Consensus 112 kkIgIIG~G~m--------------------G~AiA~~Lrds~~~~g~G~~Vivg~r~~~~----s~~~A~~~G~~~~d~ 167 (462)
+||.|-|.||| |.++|.+|.+. |++|++++++..+ .++...+.|+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~a------G~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~--- 71 (342)
T PRK12557 1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEA------GHDVVLAEPNRSILSEELWKKVEDAGVKV--- 71 (342)
T ss_pred CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhC------CCeEEEEECCHHHhhHHHHHHHHHCCCEE---
Confidence 47777777776 88999999998 9998888775431 345566778764
Q ss_pred CcCCHhhhhccCCeEEEeecchh-HHHHHHHHHhcCCCCcEEEEeccchHHH----hhhccccCCCCccEEecccCCCch
Q 012479 168 TLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFLLGH----LQSMGLDFPKNIGVIAVCPKGMGP 242 (462)
Q Consensus 168 ~~~~~~eav~~ADvViLavpd~a-~~~vl~eI~~~Lk~gaiL~~a~G~~i~~----~~~~~i~~p~~v~VV~v~Pngpg~ 242 (462)
..+..+++++||+||+++|+.. ..+++++|.+++++|++|++++.+.... +.. .++.....++++|+.|+.
T Consensus 72 -asd~~eaa~~ADvVIlaVP~~~~v~~Vl~~L~~~L~~g~IVId~ST~~~~~~s~~l~~---~l~~~~~~~gi~~~~p~~ 147 (342)
T PRK12557 72 -VSDDAEAAKHGEIHILFTPFGKKTVEIAKNILPHLPENAVICNTCTVSPVVLYYSLEG---ELRTKRKDVGISSMHPAA 147 (342)
T ss_pred -eCCHHHHHhCCCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEEecCCCHHHHHHHHHH---HhcccccccCeeecCCcc
Confidence 5688899999999999999988 6789999999999999988877664322 222 222222233343333332
Q ss_pred hhHHhhhcCccccCCCceEEE-----eeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHH--
Q 012479 243 SVRRLYVQGKEINGAGINSSF-----AVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-- 315 (462)
Q Consensus 243 ~vr~lf~~G~~~~G~Gv~ali-----av~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~pa-- 315 (462)
.... . +.|... + +.....+.++++.+..+++++|.. ++... + +.......+...+.+
T Consensus 148 v~Ga--e------~g~l~V-m~gg~t~~~~~~~~e~~e~v~~LL~a~G~~-v~~~~---~---g~~~~vk~~~n~l~av~ 211 (342)
T PRK12557 148 VPGT--P------QHGHYV-IAGKTTNGTELATEEQIEKCVELAESIGKE-PYVVP---A---DVVSAVADMGSLVTAVA 211 (342)
T ss_pred cccc--c------cchheE-EeCCCcccccCCCHHHHHHHHHHHHHcCCE-EEEeC---H---HHHHHHHHHHHHHHHHH
Confidence 2100 0 012222 2 223345788999999999999963 33332 1 123231222222222
Q ss_pred ---HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCCcchhhhchhhccCc-------hhHHHH
Q 012479 316 ---IVESLFRRFTENG-MNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASY-------YPCMEI 384 (462)
Q Consensus 316 ---liea~~d~~v~~G-~~~e~A~~~~~e~i~Gli~~li~e~G~~~m~~~vs~~~~aeyg~~~~~~~-------~~~~~~ 384 (462)
+.|+ +-.+.+.| .|++++.+.+.|++.| +++|+.++|++.|-+.+.. .+--+.+-+-.. +...++
T Consensus 212 ~a~~aE~-~~l~~~~~~~p~~~~~~~~~~~~~~-~a~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (342)
T PRK12557 212 LSGVLDY-YSVGTKIIKAPKEMIEKQILMTLQT-MASLVETSGVDGLLKALNP--ELLLRSASSMHLLEKQKDLDAALEI 287 (342)
T ss_pred HHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHHH-HHHHHHHhChHHHHHhcCH--HHHhhhHhhCCcchhhhhHHHHHHH
Confidence 2222 22333444 5566677799999998 9999999999999998873 222232222111 225678
Q ss_pred HHHHHHhccCCh
Q 012479 385 LYECYEDVAAGS 396 (462)
Q Consensus 385 m~e~~~~i~~G~ 396 (462)
++++++++..+.
T Consensus 288 ~~~~~~~~~~~~ 299 (342)
T PRK12557 288 LENLDEDLLKEI 299 (342)
T ss_pred HHHHHHHHhhcc
Confidence 888888864433
No 31
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=99.62 E-value=3.7e-14 Score=147.21 Aligned_cols=178 Identities=10% Similarity=0.028 Sum_probs=128.9
Q ss_pred CCCEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecc
Q 012479 110 GINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (462)
Q Consensus 110 gikkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd 188 (462)
.+++|+||| +|+||+++|+.|++. |+.|.++++.. ..+.++++++||+||+|+|+
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~------G~~V~~~d~~~------------------~~~~~~~~~~aDlVilavP~ 152 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLS------GYQVRILEQDD------------------WDRAEDILADAGMVIVSVPI 152 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHC------CCeEEEeCCCc------------------chhHHHHHhcCCEEEEeCcH
Confidence 348999999 999999999999999 99887776531 12456788899999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeccchH---HHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEee
Q 012479 189 AAQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (462)
Q Consensus 189 ~a~~~vl~eI~~~Lk~gaiL~~a~G~~i---~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav 265 (462)
....++++++.+ +++|++|+++++++. ..+.. ..+ .+||..||+..... ..| .|..+++
T Consensus 153 ~~~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~---~~~--~~fvg~HPm~G~~~--~~~--------~~~~vv~-- 214 (374)
T PRK11199 153 HLTEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLA---AHS--GPVLGLHPMFGPDV--GSL--------AKQVVVV-- 214 (374)
T ss_pred HHHHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHH---hCC--CCEEeeCCCCCCCC--ccc--------CCCEEEE--
Confidence 999999999999 999999999998743 22222 222 26999999754322 122 3444444
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHH-HHHHHHHHHHHcCCCHHHHHH
Q 012479 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-IVESLFRRFTENGMNEDLAYK 336 (462)
Q Consensus 266 ~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~pa-liea~~d~~v~~G~~~e~A~~ 336 (462)
....+.++++.++.+++.+|+ +++.++.++|++.- +.++ .+|. +.-++...+.+.|.+.+....
T Consensus 215 ~~~~~~~~~~~~~~l~~~lG~-~v~~~~~~~HD~~~-----a~vs-hLpH~~a~al~~~l~~~~~~~~~~~~ 279 (374)
T PRK11199 215 CDGRQPEAYQWLLEQIQVWGA-RLHRISAVEHDQNM-----AFIQ-ALRHFATFAYGLHLAKENVDLEQLLA 279 (374)
T ss_pred cCCCCchHHHHHHHHHHHCCC-EEEECCHHHHHHHH-----HHHH-HHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 334466788999999999996 68888888887542 2334 3354 445556666667888766543
No 32
>PLN02712 arogenate dehydrogenase
Probab=99.61 E-value=2.7e-14 Score=158.17 Aligned_cols=194 Identities=12% Similarity=0.073 Sum_probs=133.8
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhc-cCCeEEEe
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVLLL 185 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~-~ADvViLa 185 (462)
.+++ +||+|||+|+||+++|++|++. |++|+++++.. .. +.+.+.|+.. ..+.++++. ++|+||+|
T Consensus 366 ~~~~-~kIgIIGlG~mG~slA~~L~~~------G~~V~~~dr~~-~~-~~a~~~Gv~~----~~~~~el~~~~aDvVILa 432 (667)
T PLN02712 366 DGSK-LKIAIVGFGNFGQFLAKTMVKQ------GHTVLAYSRSD-YS-DEAQKLGVSY----FSDADDLCEEHPEVILLC 432 (667)
T ss_pred CCCC-CEEEEEecCHHHHHHHHHHHHC------cCEEEEEECCh-HH-HHHHHcCCeE----eCCHHHHHhcCCCEEEEC
Confidence 4566 8999999999999999999998 88887666653 22 5566778763 567788775 59999999
Q ss_pred ecchhHHHHHHHHHh-cCCCCcEEEEeccch---HHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceE
Q 012479 186 ISDAAQADNYEKIFS-CMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINS 261 (462)
Q Consensus 186 vpd~a~~~vl~eI~~-~Lk~gaiL~~a~G~~---i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~a 261 (462)
+|+....++++++.+ .+++|++|+++++.+ +..+.. .+|.+++||+.||+.....-+..|.. ...+.+|...
T Consensus 433 vP~~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~---~l~~~~~~v~~HPm~G~e~~~~G~~~-~~~lf~~~~v 508 (667)
T PLN02712 433 TSILSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQ---HLPQDFDILCTHPMFGPESGKNGWNN-LAFVFDKVRI 508 (667)
T ss_pred CChHHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHH---hccCCCceEeeCCCCCccccccchhh-hhhhccCcEe
Confidence 999999999998876 689999999997763 334333 45678899999998644331111221 1111223211
Q ss_pred EEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHHHHHHHHHHHHHcCCC
Q 012479 262 SFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMN 330 (462)
Q Consensus 262 liav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~paliea~~d~~v~~G~~ 330 (462)
.......+..+..+.+|..+|+ ++++++.++|++. .+.+-.+|.+ +...+++.|++
T Consensus 509 ---~~~~~~~~~~~~l~~l~~~lGa-~vv~ms~eeHD~~------~A~vShLpHl---la~~L~~~~~~ 564 (667)
T PLN02712 509 ---GSDDRRVSRCDSFLDIFAREGC-RMVEMSCAEHDWH------AAGSQFITHT---MGRLLEKLGLE 564 (667)
T ss_pred ---CCCcchHHHHHHHHHHHHHcCC-EEEEeCHHHHHHH------HHHHHHHHHH---HHHHHHHCCCc
Confidence 1222234556677899999996 7888999998833 2233344443 34777778875
No 33
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.61 E-value=6.5e-14 Score=140.67 Aligned_cols=217 Identities=12% Similarity=0.130 Sum_probs=142.4
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH-----cCceecC----------CCcCCHhhh
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----AGFTEEN----------GTLGDIYET 175 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~-----~G~~~~d----------~~~~~~~ea 175 (462)
+++|+|||+|+||.++|..|..+ |++|++.++. .+..+.+.+ .|....+ ....+..++
T Consensus 4 ~~~I~vIGaG~mG~~iA~~l~~~------g~~V~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 76 (311)
T PRK06130 4 IQNLAIIGAGTMGSGIAALFARK------GLQVVLIDVM-EGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAA 76 (311)
T ss_pred ccEEEEECCCHHHHHHHHHHHhC------CCeEEEEECC-HHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHH
Confidence 58999999999999999999998 9888776654 333433332 1210000 013567788
Q ss_pred hccCCeEEEeecchh--HHHHHHHHHhcCCCCcEE-EEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCc
Q 012479 176 ISGSDLVLLLISDAA--QADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (462)
Q Consensus 176 v~~ADvViLavpd~a--~~~vl~eI~~~Lk~gaiL-~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~ 252 (462)
+++||+||+++|++. ..+++.++.+.++++++| +.++|+.+..+.+ .++...+|+++||+.|... +
T Consensus 77 ~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg~~~~~l~~---~~~~~~~~ig~h~~~p~~~-------~- 145 (311)
T PRK06130 77 VSGADLVIEAVPEKLELKRDVFARLDGLCDPDTIFATNTSGLPITAIAQ---AVTRPERFVGTHFFTPADV-------I- 145 (311)
T ss_pred hccCCEEEEeccCcHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHh---hcCCcccEEEEccCCCCcc-------C-
Confidence 999999999999875 457888998888888876 6888888766654 3444567999999999765 1
Q ss_pred cccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHHHHHHHHHHHHHcCCCHH
Q 012479 253 EINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNED 332 (462)
Q Consensus 253 ~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~paliea~~d~~v~~G~~~e 332 (462)
. ... +++....+.+.++.+..++..+|...++ . +.+..-| ++...+.+++......+.+.|++++
T Consensus 146 ----~-l~~-i~~g~~t~~~~~~~v~~l~~~~G~~~v~-~----~~d~~G~----i~nr~~~~~~~Ea~~l~~~g~~~~~ 210 (311)
T PRK06130 146 ----P-LVE-VVRGDKTSPQTVATTMALLRSIGKRPVL-V----KKDIPGF----IANRIQHALAREAISLLEKGVASAE 210 (311)
T ss_pred ----c-eEE-EeCCCCCCHHHHHHHHHHHHHcCCEEEE-E----cCCCCCc----HHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 2 233 5567778999999999999999974211 1 1111111 2222333444434444456678998
Q ss_pred HHHHHHHHHH------HHHHHHHHHHhcHHHHHHh
Q 012479 333 LAYKNTVECI------TGIISKIISTQGMLAVYNS 361 (462)
Q Consensus 333 ~A~~~~~e~i------~Gli~~li~e~G~~~m~~~ 361 (462)
+......+.. .| .-+++-..|+..+.+.
T Consensus 211 ~id~~~~~~~g~~~~~~G-p~~~~D~~Gl~~~~~~ 244 (311)
T PRK06130 211 DIDEVVKWSLGIRLALTG-PLEQRDMNGLDVHLAV 244 (311)
T ss_pred HHHHHHHhcCCCCccCCC-HHHHhhhhccchHHHH
Confidence 8877543321 24 3455666676544433
No 34
>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein. This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.
Probab=99.58 E-value=4.4e-13 Score=135.94 Aligned_cols=226 Identities=13% Similarity=0.136 Sum_probs=167.4
Q ss_pred CEEEEEcccch--------------------HHHHHHHHHHhhhhhcCCcEEEEEecCCc----hhHHHHHHcCceecCC
Q 012479 112 NQIGVIGWGSQ--------------------GPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEARAAGFTEENG 167 (462)
Q Consensus 112 kkIgIIG~G~m--------------------G~AiA~~Lrds~~~~g~G~~Vivg~r~~~----~s~~~A~~~G~~~~d~ 167 (462)
|||.|-|.||| |.++|.+|.++ |++|++++++.+ ..++...+.|...
T Consensus 1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkA------GheV~V~Drnrsa~e~e~~e~LaeaGA~~--- 71 (341)
T TIGR01724 1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMA------GHDVVLAEPNREFMSDDLWKKVEDAGVKV--- 71 (341)
T ss_pred CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHC------CCEEEEEeCChhhhhhhhhHHHHHCCCee---
Confidence 57778888877 88999999999 999999877533 2345677788875
Q ss_pred CcCCHhhhhccCCeEEEeecchhHH-HHHHHHHhcCCCCcEEEEeccchH---HHhhhcccc-CCCCccEEecccC-CCc
Q 012479 168 TLGDIYETISGSDLVLLLISDAAQA-DNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLD-FPKNIGVIAVCPK-GMG 241 (462)
Q Consensus 168 ~~~~~~eav~~ADvViLavpd~a~~-~vl~eI~~~Lk~gaiL~~a~G~~i---~~~~~~~i~-~p~~v~VV~v~Pn-gpg 241 (462)
+.+..|+++++|+||+++|+..+. +++..+.+++++|++|++++-+.. .+.-+..+. =++|+.|...||- -|+
T Consensus 72 -AaS~aEAAa~ADVVIL~LPd~aaV~eVl~GLaa~L~~GaIVID~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~ 150 (341)
T TIGR01724 72 -VSDDKEAAKHGEIHVLFTPFGKGTFSIARTIIEHVPENAVICNTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPG 150 (341)
T ss_pred -cCCHHHHHhCCCEEEEecCCHHHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCC
Confidence 678999999999999999988875 788889999999999998876542 222111122 2579999999996 455
Q ss_pred hhhHHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC-cccccchhhhccccchhhhHhHHhHHHH----H
Q 012479 242 PSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP-FTFATTLEQEYRSDIFGERGILLGAVHG----I 316 (462)
Q Consensus 242 ~~vr~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~-~viettf~~E~~~dlfgeqtvL~G~~pa----l 316 (462)
+.-.+.|.-+ |... + -..-+++++.+....+.+.+|.. +++ ..|+.+..+-+|-.+.+ -
T Consensus 151 ~~~~~~~~~~------~~~~-~-~~~~A~ee~i~~~~el~~~~~~~~~~~--------pa~l~~~v~Dm~s~vta~~~~g 214 (341)
T TIGR01724 151 TPQHGHYVIG------GKPT-A-GKEMATEEQISKCVELAKSTGKKAYVV--------PADVTSAVADMGSLVTAVALAG 214 (341)
T ss_pred CCCCceeeec------cccc-c-ccccCCHHHHHHHHHHHHHhCCCeeec--------chhhcchhhhHHHHHHHHHHHH
Confidence 5544556653 3332 2 24567999999999999999975 222 23455555555555444 3
Q ss_pred HHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCC
Q 012479 317 VESLFRRFTE-NGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSG 364 (462)
Q Consensus 317 iea~~d~~v~-~G~~~e~A~~~~~e~i~Gli~~li~e~G~~~m~~~vs~ 364 (462)
+-.-++.+++ .|-|.+++-..+.+++.. ++.|+.++|+..|-+.+..
T Consensus 215 il~y~~~~t~i~~ap~~~~~~~~~~~l~~-~a~l~~~~Gi~~~~~~l~p 262 (341)
T TIGR01724 215 VLDYYYVGTQIINAPKEMIEKQILMTLQT-MASLVETSGVEGMAKAINP 262 (341)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHhcCH
Confidence 4455666654 699999999999999985 9999999999999998873
No 35
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=99.58 E-value=4e-15 Score=156.47 Aligned_cols=104 Identities=11% Similarity=0.084 Sum_probs=88.7
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCCcchhhhchhhccCchhHHH----HHHHHHHhcc
Q 012479 318 ESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCME----ILYECYEDVA 393 (462)
Q Consensus 318 ea~~d~~v~~G~~~e~A~~~~~e~i~Gli~~li~e~G~~~m~~~vs~~~~aeyg~~~~~~~~~~~~----~m~e~~~~i~ 393 (462)
+++||.+|++|++|++||+++.+++. +|+++|+++||..|+|++|+ +++||.|... +.+|+ +++++|++|+
T Consensus 233 ~~~Fe~lve~G~~pe~A~k~~~~~~E-~I~e~i~e~GI~~m~d~~S~--tak~ga~~~~--~~~k~~m~p~f~~~~~~I~ 307 (487)
T PRK05225 233 LLCFDKLVAEGTDPAYAEKLIQFGWE-TITEALKQGGITLMMDRLSN--PAKIRAFELS--EQLKEIMAPLFQKHMDDII 307 (487)
T ss_pred HHHHHHHHHcCCCHHHHHHHHhhhHH-HHHHHHHhccHHHHHHhccc--hhhccccccc--HHHHHHHHHHHHHHHHHhh
Confidence 78999999999999999999999998 69999999999999999996 6669988642 33444 4599999999
Q ss_pred CChhhhHHHHhcccccccCCCCccc-ch-hhhcChhHHHh
Q 012479 394 AGSEIRSVVLAGRRFYEKEGLPAFP-MG-KIDQTRMWKVG 431 (462)
Q Consensus 394 ~G~far~~~~~~~~~~~~~g~~~~~-~~-~i~~~~ie~vG 431 (462)
||+|+|+|+.++. +|.+.+. |+ ++.+|++|++-
T Consensus 308 sG~fak~~m~d~~-----~~~~~l~~~r~~~~~~~~E~~~ 342 (487)
T PRK05225 308 SGEFSSTMMADWA-----NDDKKLLTWREETGKTAFENAP 342 (487)
T ss_pred ccHHHHHHHHHHh-----cCChHHHHHHHHhhcCchhhcc
Confidence 9999999999975 5666665 54 66899999975
No 36
>PLN02712 arogenate dehydrogenase
Probab=99.56 E-value=7.6e-14 Score=154.58 Aligned_cols=165 Identities=17% Similarity=0.176 Sum_probs=122.5
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhh-ccCCeEEEeecchh
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav-~~ADvViLavpd~a 190 (462)
++|+|||+|+||+++|++|++. |++|++..+.. ..+.+.+.|+.. ..+.++++ +++|+||+|||+..
T Consensus 53 ~kIgIIG~G~mG~slA~~L~~~------G~~V~~~dr~~--~~~~A~~~Gv~~----~~d~~e~~~~~aDvViLavP~~~ 120 (667)
T PLN02712 53 LKIAIIGFGNYGQFLAKTLISQ------GHTVLAHSRSD--HSLAARSLGVSF----FLDPHDLCERHPDVILLCTSIIS 120 (667)
T ss_pred CEEEEEccCHHHHHHHHHHHHC------CCEEEEEeCCH--HHHHHHHcCCEE----eCCHHHHhhcCCCEEEEcCCHHH
Confidence 7899999999999999999998 88887666652 235677788764 56777755 57999999999999
Q ss_pred HHHHHHHHH-hcCCCCcEEEEeccchHH---HhhhccccCCCCccEEecccCCCchhh-HHhhhcCccccCCCceEEEee
Q 012479 191 QADNYEKIF-SCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSV-RRLYVQGKEINGAGINSSFAV 265 (462)
Q Consensus 191 ~~~vl~eI~-~~Lk~gaiL~~a~G~~i~---~~~~~~i~~p~~v~VV~v~Pngpg~~v-r~lf~~G~~~~G~Gv~aliav 265 (462)
..++++++. +++++|++|+++.+++.. .+.. .+|++.+||+.||+. |+.. +..| .|.+++++.
T Consensus 121 ~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~---~l~~~~~~v~~HPMa-G~e~~~~g~--------~~~~~~~~~ 188 (667)
T PLN02712 121 TENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLD---YLPEDFDIICSHPMF-GPQSAKHGW--------DGLRFVYEK 188 (667)
T ss_pred HHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHH---hcCCCCeEEeeCCcC-CCccccchh--------ccCcEEEee
Confidence 999999886 789999999999988632 2232 456778999999984 3331 1222 345555552
Q ss_pred ----ccCCCHHHHHHHHHHHHHhCCCcccccchhhhcccc
Q 012479 266 ----HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSD 301 (462)
Q Consensus 266 ----~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~d 301 (462)
......+..+..+.+|..+|+ ++++++.++|++.-
T Consensus 189 ~~~~~~~~~~~~~~~l~~l~~~lGa-~v~~ms~eeHD~~~ 227 (667)
T PLN02712 189 VRIGNEELRVSRCKSFLEVFEREGC-KMVEMSCTEHDKYA 227 (667)
T ss_pred ccCCCccccHHHHHHHHHHHHHcCC-EEEEeCHHHHHHHH
Confidence 222223456777899999996 78888988888543
No 37
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.55 E-value=3.3e-13 Score=134.07 Aligned_cols=152 Identities=17% Similarity=0.181 Sum_probs=115.7
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHH-----------HHHHcCceec--------C-CCcC
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-----------EARAAGFTEE--------N-GTLG 170 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~-----------~A~~~G~~~~--------d-~~~~ 170 (462)
|+||+|||.|.||.++|..|..+ |++|++.+++.+ ..+ ...+.|.... . ....
T Consensus 3 ~~kI~VIG~G~mG~~ia~~la~~------g~~V~~~d~~~~-~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~ 75 (282)
T PRK05808 3 IQKIGVIGAGTMGNGIAQVCAVA------GYDVVMVDISDA-AVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTT 75 (282)
T ss_pred ccEEEEEccCHHHHHHHHHHHHC------CCceEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeC
Confidence 47899999999999999999999 988877665433 232 3333442100 0 0023
Q ss_pred CHhhhhccCCeEEEeecchhH--HHHHHHHHhcCCCCcEE-EEeccchHHHhhhccccCCCCccEEecccCCCchhhHHh
Q 012479 171 DIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (462)
Q Consensus 171 ~~~eav~~ADvViLavpd~a~--~~vl~eI~~~Lk~gaiL-~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~l 247 (462)
+. +.+++||+||+++|++.. .+++++|.++++++++| +.++|+.+..+.. .++..-+++++||+.|.+..
T Consensus 76 ~~-~~~~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~~la~---~~~~~~r~ig~h~~~P~~~~--- 148 (282)
T PRK05808 76 DL-DDLKDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSSLSITELAA---ATKRPDKVIGMHFFNPVPVM--- 148 (282)
T ss_pred CH-HHhccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHH---hhCCCcceEEeeccCCcccC---
Confidence 44 457999999999998766 67999999999999987 7889998877655 33344579999999998882
Q ss_pred hhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 248 f~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~ 287 (462)
.++. ++++...+.+..+.+..++..+|..
T Consensus 149 ---------~~ve--v~~g~~t~~e~~~~~~~l~~~lGk~ 177 (282)
T PRK05808 149 ---------KLVE--IIRGLATSDATHEAVEALAKKIGKT 177 (282)
T ss_pred ---------ccEE--EeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 3564 6678899999999999999999975
No 38
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=99.46 E-value=3.3e-12 Score=137.12 Aligned_cols=192 Identities=14% Similarity=0.076 Sum_probs=131.5
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHH------------------HcC-ceecCCCcCC
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR------------------AAG-FTEENGTLGD 171 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~------------------~~G-~~~~d~~~~~ 171 (462)
++||+|||+|+||.++|.+|..+ |++|+++++..++...... ..| +.. +.+
T Consensus 4 i~kIavIG~G~MG~~iA~~la~~------G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~----~~~ 73 (495)
T PRK07531 4 IMKAACIGGGVIGGGWAARFLLA------GIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTF----CAS 73 (495)
T ss_pred cCEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEe----eCC
Confidence 47999999999999999999999 9999888776443221110 012 332 467
Q ss_pred HhhhhccCCeEEEeecchhH--HHHHHHHHhcCCCCcEE-EEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhh
Q 012479 172 IYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (462)
Q Consensus 172 ~~eav~~ADvViLavpd~a~--~~vl~eI~~~Lk~gaiL-~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf 248 (462)
+++++++||+|+.++|+... ..++.++.++++++.+| +-++|+.+..+.+ .++..-.++..||+.|.+.
T Consensus 74 ~~ea~~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsgi~~s~l~~---~~~~~~r~~~~hP~nP~~~----- 145 (495)
T PRK07531 74 LAEAVAGADWIQESVPERLDLKRRVLAEIDAAARPDALIGSSTSGFLPSDLQE---GMTHPERLFVAHPYNPVYL----- 145 (495)
T ss_pred HHHHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcceEEEEecCCCccc-----
Confidence 88999999999999998864 34778888888888765 4667877766654 3334457999999998765
Q ss_pred hcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHH-HHHHHHHHHHHHc
Q 012479 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVH-GIVESLFRRFTEN 327 (462)
Q Consensus 249 ~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~p-aliea~~d~~v~~ 327 (462)
+--..++.....+.+.++.+..++..+|...++ -+...+-| +++.+. +++.-.+....+.
T Consensus 146 ---------~~Lvevv~g~~t~~e~~~~~~~~~~~lG~~~v~-----~~k~~~gf-----i~nrl~~a~~~EA~~L~~~g 206 (495)
T PRK07531 146 ---------LPLVELVGGGKTSPETIRRAKEILREIGMKPVH-----IAKEIDAF-----VGDRLLEALWREALWLVKDG 206 (495)
T ss_pred ---------CceEEEcCCCCCCHHHHHHHHHHHHHcCCEEEe-----ecCCCcch-----hHHHHHHHHHHHHHHHHHcC
Confidence 122246667778899999999999999975221 11122222 333333 3333334444567
Q ss_pred CCCHHHHHHHHH
Q 012479 328 GMNEDLAYKNTV 339 (462)
Q Consensus 328 G~~~e~A~~~~~ 339 (462)
|+++++.....-
T Consensus 207 ~~s~~~id~~~~ 218 (495)
T PRK07531 207 IATTEEIDDVIR 218 (495)
T ss_pred CCCHHHHHHHHh
Confidence 799998877443
No 39
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=99.45 E-value=5e-13 Score=122.98 Aligned_cols=149 Identities=22% Similarity=0.217 Sum_probs=100.6
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchh
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a 190 (462)
|+||||||+|+||.++|++|.++ |++|.+++|.. +..+...+.|... +.++.|+++++|+|++++|+..
T Consensus 1 m~~Ig~IGlG~mG~~~a~~L~~~------g~~v~~~d~~~-~~~~~~~~~g~~~----~~s~~e~~~~~dvvi~~v~~~~ 69 (163)
T PF03446_consen 1 MMKIGFIGLGNMGSAMARNLAKA------GYEVTVYDRSP-EKAEALAEAGAEV----ADSPAEAAEQADVVILCVPDDD 69 (163)
T ss_dssp -BEEEEE--SHHHHHHHHHHHHT------TTEEEEEESSH-HHHHHHHHTTEEE----ESSHHHHHHHBSEEEE-SSSHH
T ss_pred CCEEEEEchHHHHHHHHHHHHhc------CCeEEeeccch-hhhhhhHHhhhhh----hhhhhhHhhcccceEeecccch
Confidence 68999999999999999999999 99998877664 4456666678876 7899999999999999999855
Q ss_pred H-HHHHHH--HHhcCCCCcEEEEeccchHH---HhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEe
Q 012479 191 Q-ADNYEK--IFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (462)
Q Consensus 191 ~-~~vl~e--I~~~Lk~gaiL~~a~G~~i~---~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~alia 264 (462)
+ .+++.+ +.+++++|+++++++-.... .+.+ ..-+.++.+|- +|-.-+.. .-+ .|--.++.
T Consensus 70 ~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~--~~~~~g~~~vd-apV~Gg~~---~a~-------~g~l~~~~ 136 (163)
T PF03446_consen 70 AVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAE--RLAAKGVRYVD-APVSGGPP---GAE-------EGTLTIMV 136 (163)
T ss_dssp HHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHH--HHHHTTEEEEE-EEEESHHH---HHH-------HTTEEEEE
T ss_pred hhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhh--hhhhccceeee-eeeecccc---ccc-------ccceEEEc
Confidence 5 678887 99999999999988876432 2222 11134566653 22211111 111 24433333
Q ss_pred eccCCCHHHHHHHHHHHHHhCC
Q 012479 265 VHQDVDGRATNVALGWSVALGS 286 (462)
Q Consensus 265 v~qd~tgea~e~a~al~~aiG~ 286 (462)
.. +.++.+.++.+++.+|.
T Consensus 137 -gG--~~~~~~~~~~~l~~~~~ 155 (163)
T PF03446_consen 137 -GG--DEEAFERVRPLLEAMGK 155 (163)
T ss_dssp -ES---HHHHHHHHHHHHHHEE
T ss_pred -cC--CHHHHHHHHHHHHHHhC
Confidence 32 56899999999999996
No 40
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=99.45 E-value=3e-12 Score=128.65 Aligned_cols=192 Identities=21% Similarity=0.202 Sum_probs=127.1
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchhH
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a~ 191 (462)
+||+|||+|+||.++|.||.+. |+.+.+++|..++..+.+++.|... ..++.|+++++|+||+++|+..+
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~a------G~~v~v~~r~~~ka~~~~~~~Ga~~----a~s~~eaa~~aDvVitmv~~~~~ 70 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKA------GHEVTVYNRTPEKAAELLAAAGATV----AASPAEAAAEADVVITMLPDDAA 70 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHC------CCEEEEEeCChhhhhHHHHHcCCcc----cCCHHHHHHhCCEEEEecCCHHH
Confidence 5899999999999999999999 9999999998777788888889886 67889999999999999998888
Q ss_pred H-HHHH---HHHhcCCCCcEEEEeccchHHH---hhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEe
Q 012479 192 A-DNYE---KIFSCMKPNSILGLSHGFLLGH---LQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (462)
Q Consensus 192 ~-~vl~---eI~~~Lk~gaiL~~a~G~~i~~---~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~alia 264 (462)
. +|+. .+.+.+++|+++++++-+.... +.+ .+. ..+..++- +|=.-+.. ..+ .|.-.+.+
T Consensus 71 V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~-~~~-~~G~~~lD-APVsGg~~---~A~-------~GtLtimv 137 (286)
T COG2084 71 VRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAA-ALA-AKGLEFLD-APVSGGVP---GAA-------AGTLTIMV 137 (286)
T ss_pred HHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHH-HHH-hcCCcEEe-cCccCCch---hhh-------hCceEEEe
Confidence 6 5773 5999999999999998764321 111 011 12333332 23111111 011 35555333
Q ss_pred eccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHH-H-HHHHHHHH---HHHcCCCHHHHHH
Q 012479 265 VHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVH-G-IVESLFRR---FTENGMNEDLAYK 336 (462)
Q Consensus 265 v~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~p-a-liea~~d~---~v~~G~~~e~A~~ 336 (462)
.. +.++.+.++-+++.+|.. ++.. -..=.+..+=||+-+- + .+.++.|+ +.++|++++..+.
T Consensus 138 -GG--~~~~f~r~~pvl~~~g~~-i~~~------G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~ 204 (286)
T COG2084 138 -GG--DAEAFERAKPVLEAMGKN-IVHV------GPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDVVLE 204 (286)
T ss_pred -CC--CHHHHHHHHHHHHHhcCc-eEEE------CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 44 689999999999999973 2211 1111122221222111 1 33344443 4588999987665
No 41
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=99.44 E-value=1.9e-12 Score=129.48 Aligned_cols=153 Identities=16% Similarity=0.187 Sum_probs=112.4
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHH-----------HHHcCceec-------C-CCcCC
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEE-------N-GTLGD 171 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~-------d-~~~~~ 171 (462)
++||+|||+|.||.++|.+|..+ |++|++.+++.++ .+. ..+.|.... + -...+
T Consensus 4 ~~~V~vIG~G~mG~~iA~~l~~~------G~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 76 (295)
T PLN02545 4 IKKVGVVGAGQMGSGIAQLAAAA------GMDVWLLDSDPAA-LSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTT 76 (295)
T ss_pred cCEEEEECCCHHHHHHHHHHHhc------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeC
Confidence 48999999999999999999999 9988877665332 222 222231100 0 00233
Q ss_pred HhhhhccCCeEEEeec--chhHHHHHHHHHhcCCCCcEE-EEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhh
Q 012479 172 IYETISGSDLVLLLIS--DAAQADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (462)
Q Consensus 172 ~~eav~~ADvViLavp--d~a~~~vl~eI~~~Lk~gaiL-~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf 248 (462)
..+++++||+||.++| ++....++.++.++++++++| +.++|+.+..+.+ ......+++++||..|....
T Consensus 77 ~~~~~~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~~l~~---~~~~~~r~~g~h~~~pp~~~---- 149 (295)
T PLN02545 77 NLEELRDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISITRLAS---ATQRPQQVIGMHFMNPPPIM---- 149 (295)
T ss_pred CHHHhCCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCCcceEEEeccCCcccC----
Confidence 4467899999999999 555567888999999999987 5889998877655 33344689999998887651
Q ss_pred hcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 249 ~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~ 287 (462)
.. ..++.+...+.+.++.+..++..+|..
T Consensus 150 ---------~l-veiv~g~~t~~e~~~~~~~ll~~lG~~ 178 (295)
T PLN02545 150 ---------KL-VEIIRGADTSDEVFDATKALAERFGKT 178 (295)
T ss_pred ---------ce-EEEeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 12 346677888999999999999999975
No 42
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=99.43 E-value=4.6e-13 Score=111.65 Aligned_cols=90 Identities=23% Similarity=0.335 Sum_probs=73.1
Q ss_pred EEEEEcccchHHHHHHHHHHhhhhhcCC---cEEEEE-ecCCchhHHHHHHcCceecCCCcC-CHhhhhccCCeEEEeec
Q 012479 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSD---IVVKVG-LRKGSRSFAEARAAGFTEENGTLG-DIYETISGSDLVLLLIS 187 (462)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lrds~~~~g~G---~~Vivg-~r~~~~s~~~A~~~G~~~~d~~~~-~~~eav~~ADvViLavp 187 (462)
||+|||+|+||.+++++|.++ | .+|.+. .|+.++..+.+++.+... .. +..|++++||+|||++|
T Consensus 1 kI~iIG~G~mg~al~~~l~~~------g~~~~~v~~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~~~advvilav~ 70 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS------GIKPHEVIIVSSRSPEKAAELAKEYGVQA----TADDNEEAAQEADVVILAVK 70 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT------TS-GGEEEEEEESSHHHHHHHHHHCTTEE----ESEEHHHHHHHTSEEEE-S-
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCCceeEEeeccCcHHHHHHHHHhhcccc----ccCChHHhhccCCEEEEEEC
Confidence 799999999999999999999 8 788866 666666667778888654 34 79999999999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEE-EEecc
Q 012479 188 DAAQADNYEKIFSCMKPNSIL-GLSHG 213 (462)
Q Consensus 188 d~a~~~vl~eI~~~Lk~gaiL-~~a~G 213 (462)
|+...++++++ +...++++| ++++|
T Consensus 71 p~~~~~v~~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 71 PQQLPEVLSEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp GGGHHHHHHHH-HHHHTTSEEEEESTT
T ss_pred HHHHHHHHHHH-hhccCCCEEEEeCCC
Confidence 99999999999 777788865 45554
No 43
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=99.41 E-value=4.4e-12 Score=122.02 Aligned_cols=156 Identities=17% Similarity=0.154 Sum_probs=110.0
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH-------cCceecCCCcCCHhhhhccCCeEE
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-------AGFTEENGTLGDIYETISGSDLVL 183 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~-------~G~~~~d~~~~~~~eav~~ADvVi 183 (462)
|||+||| .|+||.+++..|.++ |++|+++.|..++..+.+.. .|+.. .-...+..++++++|+||
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~------G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~-~~~~~~~~ea~~~aDvVi 73 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKA------GNKIIIGSRDLEKAEEAAAKALEELGHGGSDI-KVTGADNAEAAKRADVVI 73 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhC------CCEEEEEEcCHHHHHHHHHHHHhhccccCCCc-eEEEeChHHHHhcCCEEE
Confidence 5899997 899999999999998 88888887765443333322 13210 001246678899999999
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEE-EEeccchH-----------------HHhhhccccCCCCccEEecccCCCchhhH
Q 012479 184 LLISDAAQADNYEKIFSCMKPNSIL-GLSHGFLL-----------------GHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (462)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~gaiL-~~a~G~~i-----------------~~~~~~~i~~p~~v~VV~v~Pngpg~~vr 245 (462)
+++|++.+.++++++.+.++. ++| ..+.|+.+ ..+++ .+|.+.+||+.+||.+.....
T Consensus 74 lavp~~~~~~~l~~l~~~l~~-~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~---~~p~~~~VVka~~~~~a~~~~ 149 (219)
T TIGR01915 74 LAVPWDHVLKTLESLRDELSG-KLVISPVVPLASDGGKGARYLPPEEGSAAEQAAA---LLPETSRVVAAFHNLSAVLLQ 149 (219)
T ss_pred EECCHHHHHHHHHHHHHhccC-CEEEEeccCceecCCCCceecCCCCCcHHHHHHH---hCCCCCeEeeccccCCHHHhc
Confidence 999999999999998887764 654 46667754 22333 455546899999999877654
Q ss_pred HhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHh-CCC
Q 012479 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVAL-GSP 287 (462)
Q Consensus 246 ~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~ai-G~~ 287 (462)
.. .. +.+...++| . | ++++++.+.+|...+ |+.
T Consensus 150 ~~-~~-----~~~~~~~v~-G-d-d~~ak~~v~~L~~~~~G~~ 183 (219)
T TIGR01915 150 DV-DD-----EVDCDVLVC-G-D-DEEAKEVVAELAGRIDGLR 183 (219)
T ss_pred CC-CC-----CCCCCEEEE-C-C-CHHHHHHHHHHHHhcCCCC
Confidence 31 11 245555444 3 3 456999999999999 974
No 44
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=99.39 E-value=1.3e-11 Score=123.62 Aligned_cols=149 Identities=19% Similarity=0.222 Sum_probs=101.6
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcC--------------ceecCCCcCCHhhhh
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG--------------FTEENGTLGDIYETI 176 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G--------------~~~~d~~~~~~~eav 176 (462)
|+||+|||+|+||.++|.+|.++ |++|.++.|... ..+...+.| ... ..+.++++
T Consensus 1 mmkI~iiG~G~mG~~~a~~L~~~------g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~ 69 (325)
T PRK00094 1 MMKIAVLGAGSWGTALAIVLARN------GHDVTLWARDPE-QAAEINADRENPRYLPGIKLPDNLRA----TTDLAEAL 69 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCEEEEEECCHH-HHHHHHHcCcccccCCCCcCCCCeEE----eCCHHHHH
Confidence 57999999999999999999999 999887776533 344444432 222 45677888
Q ss_pred ccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEec-cchHH-------HhhhccccCCC-CccEEecccCCCchhhHHh
Q 012479 177 SGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH-GFLLG-------HLQSMGLDFPK-NIGVIAVCPKGMGPSVRRL 247 (462)
Q Consensus 177 ~~ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~-G~~i~-------~~~~~~i~~p~-~v~VV~v~Pngpg~~vr~l 247 (462)
+++|+||+++|+....++++++.++++++++|+... |+... .+.+ ..+. ....++..|+.+...
T Consensus 70 ~~~D~vi~~v~~~~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~---~~~~~~~~~~~~~P~~~~~~---- 142 (325)
T PRK00094 70 ADADLILVAVPSQALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEE---ELPDLAPIAVLSGPSFAKEV---- 142 (325)
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHH---HcCCCCceEEEECccHHHHH----
Confidence 999999999999988899999999999998766444 77531 2222 2222 123455667654333
Q ss_pred hhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCC
Q 012479 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286 (462)
Q Consensus 248 f~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~ 286 (462)
+.|.+.++... ..+.+..+.+..+++..|.
T Consensus 143 --------~~g~~~~~~~~-~~~~~~~~~~~~~l~~~~~ 172 (325)
T PRK00094 143 --------ARGLPTAVVIA-STDEELAERVQELFHSPYF 172 (325)
T ss_pred --------HcCCCcEEEEE-eCCHHHHHHHHHHhCCCCE
Confidence 12333322222 2356788888999998885
No 45
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.38 E-value=3.1e-11 Score=121.39 Aligned_cols=196 Identities=15% Similarity=0.121 Sum_probs=122.3
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhcc---CCeEEEeecc
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG---SDLVLLLISD 188 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~---ADvViLavpd 188 (462)
++|+|||+|+||.++|++|.+. |++|++++|+.+ ..+.+.+.|... ..+.++++++ +|+||+++|+
T Consensus 1 m~Ig~IGlG~mG~~mA~~L~~~------g~~v~v~dr~~~-~~~~~~~~g~~~----~~s~~~~~~~~~~advVi~~vp~ 69 (299)
T PRK12490 1 MKLGLIGLGKMGGNMAERLRED------GHEVVGYDVNQE-AVDVAGKLGITA----RHSLEELVSKLEAPRTIWVMVPA 69 (299)
T ss_pred CEEEEEcccHHHHHHHHHHHhC------CCEEEEEECCHH-HHHHHHHCCCee----cCCHHHHHHhCCCCCEEEEEecC
Confidence 4899999999999999999998 999888776543 445556678764 5688888876 6999999999
Q ss_pred h-hHHHHHHHHHhcCCCCcEEEEeccchH---HHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEe
Q 012479 189 A-AQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (462)
Q Consensus 189 ~-a~~~vl~eI~~~Lk~gaiL~~a~G~~i---~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~alia 264 (462)
. ...++++++.+.+++|++|++++.... ..+.+ . .-..++.++- +|-.-+.. .=+ .|. .++
T Consensus 70 ~~~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~-~-~~~~g~~~vd-apV~G~~~---~a~-------~g~-~~~- 134 (299)
T PRK12490 70 GEVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAE-E-LAERGIHYVD-CGTSGGVW---GLR-------NGY-CLM- 134 (299)
T ss_pred chHHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHH-H-HHHcCCeEEe-CCCCCCHH---HHh-------cCC-eEE-
Confidence 8 667889999999999999998876532 22221 1 1124566643 34221111 001 455 333
Q ss_pred eccCCCHHHHHHHHHHHHHhCCC--cccccch-hhhccccchhhhHhHHhHHHHHHHHHHHHHHHcC--CCHHHHHHH
Q 012479 265 VHQDVDGRATNVALGWSVALGSP--FTFATTL-EQEYRSDIFGERGILLGAVHGIVESLFRRFTENG--MNEDLAYKN 337 (462)
Q Consensus 265 v~qd~tgea~e~a~al~~aiG~~--~viettf-~~E~~~dlfgeqtvL~G~~paliea~~d~~v~~G--~~~e~A~~~ 337 (462)
+.. ++++.+.++.+++.+|.. .++..-. -.-....+. -+.++.+.+.++.|++ ..+.+.| ++++..+..
T Consensus 135 ~gG--~~~~~~~~~~~l~~~~~~~~~~~~~G~~g~a~~~Kl~-~n~~~~~~~~~~aEa~-~l~~~~g~~ld~~~~~~~ 208 (299)
T PRK12490 135 VGG--DKEIYDRLEPVFKALAPEGPGYVHAGPVGSGHFLKMV-HNGIEYGMMQAYAEGL-ELLDKSDFDFDVEDVARL 208 (299)
T ss_pred ecC--CHHHHHHHHHHHHHhcCcCCcEEEECCcCHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHHcccCCCHHHHHHH
Confidence 344 577899999999999961 1221110 000001111 1222233333344443 3456788 889877764
No 46
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=99.36 E-value=7.3e-11 Score=118.74 Aligned_cols=147 Identities=16% Similarity=0.124 Sum_probs=104.7
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhh---hccCCeEEEeecc
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET---ISGSDLVLLLISD 188 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~ea---v~~ADvViLavpd 188 (462)
|+|+|||+|+||.++|++|.+. |++|++++|+.+ ..+...+.|... ..+.+++ ++++|+|++++|+
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~------g~~V~~~dr~~~-~~~~l~~~g~~~----~~s~~~~~~~~~~~dvIi~~vp~ 69 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKR------GHDCVGYDHDQD-AVKAMKEDRTTG----VANLRELSQRLSAPRVVWVMVPH 69 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHC------CCEEEEEECCHH-HHHHHHHcCCcc----cCCHHHHHhhcCCCCEEEEEcCc
Confidence 5899999999999999999999 999888766544 455566667653 3455554 4568999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeccch---HHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEee
Q 012479 189 AAQADNYEKIFSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (462)
Q Consensus 189 ~a~~~vl~eI~~~Lk~gaiL~~a~G~~---i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav 265 (462)
....++++++.+++++|++|++++... .....+ ..-..+++++-....+.....+ .|. + +.+
T Consensus 70 ~~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~--~~~~~g~~~vda~vsGg~~~a~-----------~G~-~-~~~ 134 (298)
T TIGR00872 70 GIVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYK--LLKEKGIHLLDCGTSGGVWGRE-----------RGY-C-FMI 134 (298)
T ss_pred hHHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHH--HHHhcCCeEEecCCCCCHHHHh-----------cCC-e-eee
Confidence 988899999999999999988876542 111111 1224567787755444222211 364 4 333
Q ss_pred ccCCCHHHHHHHHHHHHHhCC
Q 012479 266 HQDVDGRATNVALGWSVALGS 286 (462)
Q Consensus 266 ~qd~tgea~e~a~al~~aiG~ 286 (462)
.. +.++.+.++.+++.+|.
T Consensus 135 gG--~~~~~~~~~~~l~~~~~ 153 (298)
T TIGR00872 135 GG--DGEAFARAEPLFADVAP 153 (298)
T ss_pred CC--CHHHHHHHHHHHHHhcC
Confidence 44 67899999999999996
No 47
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.36 E-value=1.5e-10 Score=115.67 Aligned_cols=213 Identities=16% Similarity=0.188 Sum_probs=137.1
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc-------------------------Cceec
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-------------------------GFTEE 165 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~-------------------------G~~~~ 165 (462)
++||+|||.|.||.++|..|..+ |++|++.++..+ ..+.+.+. .+..
T Consensus 3 ~~kIaViGaG~mG~~iA~~la~~------G~~V~l~d~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~- 74 (287)
T PRK08293 3 IKNVTVAGAGVLGSQIAFQTAFH------GFDVTIYDISDE-ALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL- 74 (287)
T ss_pred ccEEEEECCCHHHHHHHHHHHhc------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-
Confidence 48999999999999999999998 999887766533 23333211 2221
Q ss_pred CCCcCCHhhhhccCCeEEEeecch--hHHHHHHHHHhcCCCCcEEE-EeccchHHHhhhccccCCCCccEEecccCCCch
Q 012479 166 NGTLGDIYETISGSDLVLLLISDA--AQADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGP 242 (462)
Q Consensus 166 d~~~~~~~eav~~ADvViLavpd~--a~~~vl~eI~~~Lk~gaiL~-~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~ 242 (462)
+.+.++++++||+||.++|.+ ...++++++.+.++++++|+ .++++.+..+.+ ..+..-+|+..||-.|.+
T Consensus 75 ---~~d~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~---~~~~~~r~vg~Hf~~p~~ 148 (287)
T PRK08293 75 ---TTDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAE---ATGRPEKFLALHFANEIW 148 (287)
T ss_pred ---eCCHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHh---hcCCcccEEEEcCCCCCC
Confidence 467888999999999999966 45678899999999999875 445555544443 223334799999977754
Q ss_pred hhHHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHh-HHHHHHHHHH
Q 012479 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLG-AVHGIVESLF 321 (462)
Q Consensus 243 ~vr~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G-~~paliea~~ 321 (462)
. .-.+-+.++...+++.++.+.+++..+|...++-. .+ .-+. +.+ .+.+++...+
T Consensus 149 ~--------------~~lvevv~~~~t~~~~~~~~~~~~~~~Gk~pv~v~---~d-~pgf------i~nRi~~~~~~ea~ 204 (287)
T PRK08293 149 K--------------NNTAEIMGHPGTDPEVFDTVVAFAKAIGMVPIVLK---KE-QPGY------ILNSLLVPFLSAAL 204 (287)
T ss_pred c--------------CCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEec---CC-CCCH------hHHHHHHHHHHHHH
Confidence 3 23444667888899999999999999996422111 11 1111 222 2223332222
Q ss_pred HHHHHcCC-CHHHHHHH---HHHHHHHHHHHHHHHhcHHHHHHhcC
Q 012479 322 RRFTENGM-NEDLAYKN---TVECITGIISKIISTQGMLAVYNSFS 363 (462)
Q Consensus 322 d~~v~~G~-~~e~A~~~---~~e~i~Gli~~li~e~G~~~m~~~vs 363 (462)
.+++.|+ ++++--.. ....-.| .-+++-..|++.+++...
T Consensus 205 -~l~~~g~a~~~~iD~a~~~~~g~~~G-p~~~~D~~Gld~~~~~~~ 248 (287)
T PRK08293 205 -ALWAKGVADPETIDKTWMIATGAPMG-PFGILDIVGLDTAYNITS 248 (287)
T ss_pred -HHHHcCCCCHHHHHHHHHhccCCCcC-HHHHHHHhchHHHHHHHH
Confidence 3577885 56554432 2221235 356677778766555543
No 48
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=99.36 E-value=4.7e-11 Score=120.02 Aligned_cols=197 Identities=14% Similarity=0.123 Sum_probs=123.5
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchh
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a 190 (462)
|+||+|||+|+||.++|.+|.+. |++|++++++.+ ..+...+.|... ..+..+++++||+||+++|+..
T Consensus 1 m~~Ig~IGlG~mG~~mA~~l~~~------G~~V~v~d~~~~-~~~~~~~~g~~~----~~s~~~~~~~aDvVi~~vp~~~ 69 (296)
T PRK15461 1 MAAIAFIGLGQMGSPMASNLLKQ------GHQLQVFDVNPQ-AVDALVDKGATP----AASPAQAAAGAEFVITMLPNGD 69 (296)
T ss_pred CCeEEEEeeCHHHHHHHHHHHHC------CCeEEEEcCCHH-HHHHHHHcCCcc----cCCHHHHHhcCCEEEEecCCHH
Confidence 46899999999999999999998 998887776644 455555667654 5688899999999999999986
Q ss_pred H-HHHHH---HHHhcCCCCcEEEEeccchHH---HhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEE
Q 012479 191 Q-ADNYE---KIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (462)
Q Consensus 191 ~-~~vl~---eI~~~Lk~gaiL~~a~G~~i~---~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~ali 263 (462)
+ ..++. .+.+.+++|+++++++-+... .+.+ .....++.++- +|-.-+... =. .|...++
T Consensus 70 ~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~--~l~~~g~~~ld-apV~g~~~~---a~-------~g~l~~~ 136 (296)
T PRK15461 70 LVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIA--DMQAKGFSMMD-VPVGRTSDN---AI-------TGTLLLL 136 (296)
T ss_pred HHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCcEEE-ccCCCCHHH---HH-------hCcEEEE
Confidence 4 55664 477889999998877765432 2211 11123566553 453222210 11 3555544
Q ss_pred eeccCCCHHHHHHHHHHHHHhCCCcccccc-hhhhccccchhhhHhHHhHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 012479 264 AVHQDVDGRATNVALGWSVALGSPFTFATT-LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKN 337 (462)
Q Consensus 264 av~qd~tgea~e~a~al~~aiG~~~viett-f~~E~~~dlfgeqtvL~G~~paliea~~d~~v~~G~~~e~A~~~ 337 (462)
+ .. +.+..+.++.+++.+|.. ++... .-.=....+. .-.++++..+++--.+..+.+.|++++..+..
T Consensus 137 ~-gg--~~~~~~~~~p~l~~~g~~-~~~~g~~G~g~~~Kl~--~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~ 205 (296)
T PRK15461 137 A-GG--TAEQVERATPILMAMGNE-LINAGGPGMGIRVKLI--NNYMSIALNALSAEAAVLCEALGLSFDVALKV 205 (296)
T ss_pred E-CC--CHHHHHHHHHHHHHHcCC-eEeeCCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 3 33 678899999999999964 22221 0000111111 11123333333333344567899999887653
No 49
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=99.34 E-value=5.3e-11 Score=119.76 Aligned_cols=194 Identities=13% Similarity=0.057 Sum_probs=125.6
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchhH
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a~ 191 (462)
|||+|||+|+||.+++++|.++ |++|.++++.. + .+...+.|... ..+..|++++||+||+++|+..+
T Consensus 1 m~Ig~IGlG~MG~~ma~~L~~~------G~~v~v~~~~~-~-~~~~~~~g~~~----~~s~~~~~~~advVi~~v~~~~~ 68 (292)
T PRK15059 1 MKLGFIGLGIMGTPMAINLARA------GHQLHVTTIGP-V-ADELLSLGAVS----VETARQVTEASDIIFIMVPDTPQ 68 (292)
T ss_pred CeEEEEccCHHHHHHHHHHHHC------CCeEEEEeCCH-h-HHHHHHcCCee----cCCHHHHHhcCCEEEEeCCChHH
Confidence 4799999999999999999999 99888877653 2 34455677764 56888999999999999998855
Q ss_pred -HHHHH---HHHhcCCCCcEEEEeccchHH---HhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEe
Q 012479 192 -ADNYE---KIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (462)
Q Consensus 192 -~~vl~---eI~~~Lk~gaiL~~a~G~~i~---~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~alia 264 (462)
.+++. .+.+.+++|++|++++..... .+.+ ..-..++.|+- +|-.-+.. ..+. |-..+++
T Consensus 69 v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~--~~~~~G~~~vd-aPVsGg~~---~a~~-------g~l~~~~ 135 (292)
T PRK15059 69 VEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFAR--QVNELGGDYLD-APVSGGEI---GARE-------GTLSIMV 135 (292)
T ss_pred HHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCCEEE-ecCCCCHH---HHhc-------CcEEEEE
Confidence 56663 367778999999999877542 2211 12234677777 58543333 2232 4434343
Q ss_pred eccCCCHHHHHHHHHHHHHhCCCcccccc-hhhhccccchhhhHhHHhHHHHHHHHHHHHHHHcCCCHHHHHH
Q 012479 265 VHQDVDGRATNVALGWSVALGSPFTFATT-LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYK 336 (462)
Q Consensus 265 v~qd~tgea~e~a~al~~aiG~~~viett-f~~E~~~dlfgeqtvL~G~~paliea~~d~~v~~G~~~e~A~~ 336 (462)
.. +.+.++.++.+++.+|.. ++... .-.=....+. -+..+...+.++.|++ ..+.+.|++++..+.
T Consensus 136 -gG--~~~~~~~~~p~l~~~g~~-~~~~G~~G~g~~~Kl~-~N~l~~~~~~a~~Ea~-~la~~~Gld~~~~~~ 202 (292)
T PRK15059 136 -GG--DEAVFERVKPLFELLGKN-ITLVGGNGDGQTCKVA-NQIIVALNIEAVSEAL-LFASKAGADPVRVRQ 202 (292)
T ss_pred -cC--CHHHHHHHHHHHHHHcCC-cEEeCCccHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHH
Confidence 33 578899999999999964 22221 0111111111 1222222333455553 235789999998775
No 50
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=99.31 E-value=1.3e-10 Score=116.03 Aligned_cols=190 Identities=17% Similarity=0.152 Sum_probs=121.7
Q ss_pred EEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchhHH
Q 012479 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQA 192 (462)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a~~ 192 (462)
||+|||+|+||.++|.+|.+. |++|++++++. ...+.+.+.|... ..+..+++++||+||+++|+..+.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~------G~~V~~~dr~~-~~~~~~~~~g~~~----~~~~~~~~~~aDivi~~vp~~~~~ 69 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKA------GYQLHVTTIGP-EVADELLAAGAVT----AETARQVTEQADVIFTMVPDSPQV 69 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHC------CCeEEEEcCCH-HHHHHHHHCCCcc----cCCHHHHHhcCCEEEEecCCHHHH
Confidence 599999999999999999999 99988776654 4466666777754 567889999999999999987554
Q ss_pred -HHH---HHHHhcCCCCcEEEEeccchHH---HhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEee
Q 012479 193 -DNY---EKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265 (462)
Q Consensus 193 -~vl---~eI~~~Lk~gaiL~~a~G~~i~---~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav 265 (462)
.++ +.+.+.+++|++|++++.+... .+.+ ....+++.++- +|-. +... ... .|...++.
T Consensus 70 ~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~--~l~~~g~~~~~-~pv~-g~~~--~a~-------~g~l~i~~- 135 (291)
T TIGR01505 70 EEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAK--AVKEKGIDYLD-APVS-GGEI--GAI-------EGTLSIMV- 135 (291)
T ss_pred HHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCCEEe-cCCC-CCHH--HHh-------cCCEEEEe-
Confidence 455 3477888999998887766432 2222 11124667776 5742 2111 111 24444343
Q ss_pred ccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhH-HhHHHH-HHHHHH---HHHHHcCCCHHHHHH
Q 012479 266 HQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGIL-LGAVHG-IVESLF---RRFTENGMNEDLAYK 336 (462)
Q Consensus 266 ~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL-~G~~pa-liea~~---d~~v~~G~~~e~A~~ 336 (462)
.. +++..+.+..+++.+|.. ++..- .... ++..=| .+.+-+ .++++. ..+.+.|+++++.+.
T Consensus 136 gg--~~~~~~~~~~ll~~lg~~-~~~~g---~~g~---a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~ 202 (291)
T TIGR01505 136 GG--DQAVFDRVKPLFEALGKN-IVLVG---GNGD---GQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVRQ 202 (291)
T ss_pred cC--CHHHHHHHHHHHHHhcCC-eEEeC---CCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 33 478999999999999964 22221 1000 111112 222222 333333 445689999998776
No 51
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.31 E-value=5.3e-11 Score=118.97 Aligned_cols=152 Identities=17% Similarity=0.239 Sum_probs=111.3
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH--------------cCceecC---------C
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--------------AGFTEEN---------G 167 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~--------------~G~~~~d---------~ 167 (462)
++||+|||+|+||.++|..|.++ |++|++.+++. +..+.+.+ .|....+ .
T Consensus 3 i~~I~ViGaG~mG~~iA~~la~~------G~~V~l~d~~~-~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~ 75 (291)
T PRK06035 3 IKVIGVVGSGVMGQGIAQVFART------GYDVTIVDVSE-EILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIR 75 (291)
T ss_pred CcEEEEECccHHHHHHHHHHHhc------CCeEEEEeCCH-HHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcE
Confidence 47999999999999999999999 99887766553 33332211 1211000 0
Q ss_pred CcCCHhhhhccCCeEEEeecchh--HHHHHHHHHhcCCCCcEE-EEeccchHHHhhhccccCCCCccEEecccCCCchhh
Q 012479 168 TLGDIYETISGSDLVLLLISDAA--QADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSV 244 (462)
Q Consensus 168 ~~~~~~eav~~ADvViLavpd~a--~~~vl~eI~~~Lk~gaiL-~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~v 244 (462)
...+. +++++||+||+++|++. ..++++++.++++++++| +-++|+.+..+.+ .++..-+++++||..|.+..
T Consensus 76 ~~~~~-~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~~~~~la~---~~~~~~r~ig~hf~~P~~~~ 151 (291)
T PRK06035 76 TSTSY-ESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGIMIAEIAT---ALERKDRFIGMHWFNPAPVM 151 (291)
T ss_pred eeCCH-HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCCCHHHHHh---hcCCcccEEEEecCCCcccC
Confidence 12334 67899999999999886 367888999999999875 4667777766654 33344579999999998872
Q ss_pred HHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 245 RRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 245 r~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~ 287 (462)
.++. +..++..+++..+.+..+++.+|..
T Consensus 152 ------------~~vE--v~~g~~T~~e~~~~~~~~~~~lgk~ 180 (291)
T PRK06035 152 ------------KLIE--VVRAALTSEETFNTTVELSKKIGKI 180 (291)
T ss_pred ------------ccEE--EeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 2443 3368888999999999999999975
No 52
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.31 E-value=5.6e-11 Score=118.61 Aligned_cols=149 Identities=15% Similarity=0.090 Sum_probs=110.5
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH-----------cC-------------ceecC
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AG-------------FTEEN 166 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~-----------~G-------------~~~~d 166 (462)
++||+|||.|.||.++|..|.++ |++|+++++..+ ..+.+.+ .| +..
T Consensus 1 ~~~V~VIG~G~mG~~iA~~la~~------G~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-- 71 (288)
T PRK09260 1 IEKLVVVGAGVMGRGIAYVFAVS------GFQTTLVDIKQE-QLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-- 71 (288)
T ss_pred CcEEEEECccHHHHHHHHHHHhC------CCcEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE--
Confidence 47999999999999999999999 999887766533 3333321 11 121
Q ss_pred CCcCCHhhhhccCCeEEEeecchhHH--HHHHHHHhcCCCCcEE-EEeccchHHHhhhccccCCCCccEEecccCCCchh
Q 012479 167 GTLGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (462)
Q Consensus 167 ~~~~~~~eav~~ADvViLavpd~a~~--~vl~eI~~~Lk~gaiL-~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~ 243 (462)
+.+.++++++||+||.|+|+.... .++.++.++++++++| +.++.+.+..+.+ ......+++.+|+-.|.+.
T Consensus 72 --~~~~~~~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~---~~~~~~r~~g~h~~~Pv~~ 146 (288)
T PRK09260 72 --SLDLKAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIAS---FTKRPERVIAMHFFNPVHK 146 (288)
T ss_pred --eCcHHHhhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcccEEEEecCCCccc
Confidence 356778999999999999988753 5778899999999977 5666677665544 2223346888898866543
Q ss_pred hHHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 244 VRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 244 vr~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~ 287 (462)
+--..++.+...+.+.++.+..++..+|..
T Consensus 147 --------------~~Lve~v~g~~t~~~~~~~~~~~l~~lg~~ 176 (288)
T PRK09260 147 --------------MKLVELIRGLETSDETVQVAKEVAEQMGKE 176 (288)
T ss_pred --------------CceEEEeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 233446667788999999999999999964
No 53
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=99.28 E-value=3.4e-10 Score=114.23 Aligned_cols=193 Identities=13% Similarity=0.126 Sum_probs=123.7
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHH-----------HHHcCceecC---------CCcC
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTLG 170 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~d---------~~~~ 170 (462)
|++|+|||.|.||.++|.+|.++ |++|+++++..+ ..+. ..+.|..... ..+.
T Consensus 2 ~~~V~VIG~G~mG~~iA~~la~~------G~~V~v~d~~~~-~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~ 74 (308)
T PRK06129 2 MGSVAIIGAGLIGRAWAIVFARA------GHEVRLWDADPA-AAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTD 74 (308)
T ss_pred CcEEEEECccHHHHHHHHHHHHC------CCeeEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEEC
Confidence 47899999999999999999999 999888776533 2332 2234532000 1246
Q ss_pred CHhhhhccCCeEEEeecchh--HHHHHHHHHhcCCCCcEEE-EeccchHHHhhhccccCCCCccEEecccCCCchhhHHh
Q 012479 171 DIYETISGSDLVLLLISDAA--QADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (462)
Q Consensus 171 ~~~eav~~ADvViLavpd~a--~~~vl~eI~~~Lk~gaiL~-~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~l 247 (462)
+..+++++||+|+.++|+.. ...++.++.+..+++.+|. -+++..+..+.+ .++..-.++..||..|.+..
T Consensus 75 ~~~~a~~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts~~~~~~la~---~~~~~~~~~~~hp~~p~~~~--- 148 (308)
T PRK06129 75 SLADAVADADYVQESAPENLELKRALFAELDALAPPHAILASSTSALLASAFTE---HLAGRERCLVAHPINPPYLI--- 148 (308)
T ss_pred cHHHhhCCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCCCCCHHHHHH---hcCCcccEEEEecCCCcccC---
Confidence 78889999999999999874 3567778877766665543 233444444443 33444579999998876541
Q ss_pred hhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHH-HHHHHHHHHHHHH
Q 012479 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAV-HGIVESLFRRFTE 326 (462)
Q Consensus 248 f~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~-paliea~~d~~v~ 326 (462)
.. ..++++...+.+.++.++.++..+|.. ++... .+ ... | +++-+ .+++..++..+-+
T Consensus 149 ----------~l-veiv~~~~t~~~~~~~~~~~~~~lG~~-~v~v~--~~-~~G-~-----i~nrl~~a~~~EA~~l~~~ 207 (308)
T PRK06129 149 ----------PV-VEVVPAPWTAPATLARAEALYRAAGQS-PVRLR--RE-IDG-F-----VLNRLQGALLREAFRLVAD 207 (308)
T ss_pred ----------ce-EEEeCCCCCCHHHHHHHHHHHHHcCCE-EEEec--CC-Ccc-H-----HHHHHHHHHHHHHHHHHHc
Confidence 12 236667778899999999999999964 22221 11 111 1 22222 2333333344445
Q ss_pred cCCCHHHHHHH
Q 012479 327 NGMNEDLAYKN 337 (462)
Q Consensus 327 ~G~~~e~A~~~ 337 (462)
.|+++++....
T Consensus 208 g~~~~~~id~~ 218 (308)
T PRK06129 208 GVASVDDIDAV 218 (308)
T ss_pred CCCCHHHHHHH
Confidence 66899887764
No 54
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=99.27 E-value=3.4e-10 Score=112.96 Aligned_cols=196 Identities=17% Similarity=0.190 Sum_probs=120.3
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchh
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a 190 (462)
+++|+|||+|.||.++|.+|.+. |++|++++++ ....+.+.+.|... +.+.++++++||+||+++|+..
T Consensus 2 ~~~IgviG~G~mG~~~a~~l~~~------g~~v~~~d~~-~~~~~~~~~~g~~~----~~~~~e~~~~~d~vi~~vp~~~ 70 (296)
T PRK11559 2 TMKVGFIGLGIMGKPMSKNLLKA------GYSLVVYDRN-PEAVAEVIAAGAET----ASTAKAVAEQCDVIITMLPNSP 70 (296)
T ss_pred CceEEEEccCHHHHHHHHHHHHC------CCeEEEEcCC-HHHHHHHHHCCCee----cCCHHHHHhcCCEEEEeCCCHH
Confidence 37899999999999999999998 9888776654 34455566677654 5678899999999999999776
Q ss_pred HH-HHH---HHHHhcCCCCcEEEEeccchHH---HhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEE
Q 012479 191 QA-DNY---EKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (462)
Q Consensus 191 ~~-~vl---~eI~~~Lk~gaiL~~a~G~~i~---~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~ali 263 (462)
+. .++ +++.+.+++|++|++++.+... .+.+ .....+++++- +|-.-+... .. .|...++
T Consensus 71 ~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~--~~~~~g~~~~d-~pv~g~~~~----a~------~g~l~i~ 137 (296)
T PRK11559 71 HVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAA--ALKAKGIEMLD-APVSGGEPK----AI------DGTLSVM 137 (296)
T ss_pred HHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHH--HHHHcCCcEEE-cCCCCCHHH----Hh------hCcEEEE
Confidence 64 455 3588889999999988877542 2222 01123455543 242211110 00 2444434
Q ss_pred eeccCCCHHHHHHHHHHHHHhCCCcccccchh-hhccccchhhhHhHHhHHHHHHHHHHHHHHHcCCCHHHHHH
Q 012479 264 AVHQDVDGRATNVALGWSVALGSPFTFATTLE-QEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYK 336 (462)
Q Consensus 264 av~qd~tgea~e~a~al~~aiG~~~viettf~-~E~~~dlfgeqtvL~G~~paliea~~d~~v~~G~~~e~A~~ 336 (462)
. .. +.+..+.+..+++.+|.. ++.+.-. .=....+. ....+.+.+ +++--++..+.+.|+++++.+.
T Consensus 138 ~-gg--~~~~~~~~~~~l~~~~~~-~~~~g~~g~a~~~Kl~-~n~~~~~~~-~~~~Ea~~l~~~~Gi~~~~~~~ 205 (296)
T PRK11559 138 V-GG--DKAIFDKYYDLMKAMAGS-VVHTGDIGAGNVTKLA-NQVIVALNI-AAMSEALVLATKAGVNPDLVYQ 205 (296)
T ss_pred E-CC--CHHHHHHHHHHHHHhcCC-eEEeCCcCHHHHHHHH-HHHHHHHHH-HHHHHHHHHHHHcCCCHHHHHH
Confidence 3 33 578899999999999974 2222100 00000011 111122222 2333345566788999987765
No 55
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.26 E-value=1.4e-10 Score=115.96 Aligned_cols=152 Identities=20% Similarity=0.243 Sum_probs=109.2
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH-----------cCceecC---------CCcC
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEEN---------GTLG 170 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~d---------~~~~ 170 (462)
++||+|||.|.||.++|.+|..+ |++|+++++..+ ..+.+.+ .|..... ....
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~------G~~V~l~d~~~~-~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~ 76 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALA------GYDVLLNDVSAD-RLEAGLATINGNLARQVAKGKISEEARAAALARISTAT 76 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeC
Confidence 48999999999999999999999 999888776533 2333221 2321000 0134
Q ss_pred CHhhhhccCCeEEEeecchhH--HHHHHHHHhcCCCCcEE-EEeccchHHHhhhccccCCCCccEEecccCCCchhhHHh
Q 012479 171 DIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRL 247 (462)
Q Consensus 171 ~~~eav~~ADvViLavpd~a~--~~vl~eI~~~Lk~gaiL-~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~l 247 (462)
+. +.+++||+||.++|...+ ..++++|.+.++++++| +.++++.+..+.+ .+...-+++++|+.-|.+..
T Consensus 77 ~~-~~~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s~la~---~~~~~~r~~g~h~~~p~~~~--- 149 (292)
T PRK07530 77 DL-EDLADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISITRLAS---ATDRPERFIGIHFMNPVPVM--- 149 (292)
T ss_pred CH-HHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCcccEEEeeccCCcccC---
Confidence 45 457899999999997644 46888999999999976 4788887766654 22233578898987776652
Q ss_pred hhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 248 YVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 248 f~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~ 287 (462)
.++ - +.++...+.+.++.+..++..+|..
T Consensus 150 ---------~~v-e-i~~g~~t~~~~~~~~~~~~~~~gk~ 178 (292)
T PRK07530 150 ---------KLV-E-LIRGIATDEATFEAAKEFVTKLGKT 178 (292)
T ss_pred ---------ceE-E-EeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 133 3 4557778999999999999999964
No 56
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=99.25 E-value=3e-10 Score=122.06 Aligned_cols=152 Identities=14% Similarity=0.071 Sum_probs=104.7
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH---cCceecCCCcCCHhhhhcc---CCeEEE
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISG---SDLVLL 184 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~---~G~~~~d~~~~~~~eav~~---ADvViL 184 (462)
+.+|||||+|+||.++|+||.++ |++|.|++|..++..+...+ .|... -....+++|+++. +|+||+
T Consensus 6 ~~~IG~IGLG~MG~~mA~nL~~~------G~~V~V~NRt~~k~~~l~~~~~~~Ga~~-~~~a~s~~e~v~~l~~~dvIi~ 78 (493)
T PLN02350 6 LSRIGLAGLAVMGQNLALNIAEK------GFPISVYNRTTSKVDETVERAKKEGNLP-LYGFKDPEDFVLSIQKPRSVII 78 (493)
T ss_pred CCCEEEEeeHHHHHHHHHHHHhC------CCeEEEECCCHHHHHHHHHhhhhcCCcc-cccCCCHHHHHhcCCCCCEEEE
Confidence 36899999999999999999999 99999998876654443332 24320 0015688888876 999999
Q ss_pred eecchhHH-HHHHHHHhcCCCCcEEEEeccchH---HHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCce
Q 012479 185 LISDAAQA-DNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (462)
Q Consensus 185 avpd~a~~-~vl~eI~~~Lk~gaiL~~a~G~~i---~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~ 260 (462)
++|+.... +|++.+.+.+++|++|++.+-... ....+ ..-.+++.++. +|-.-+..-. + .|-
T Consensus 79 ~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~--~l~~~Gi~fld-apVSGG~~gA---~-------~G~- 144 (493)
T PLN02350 79 LVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIK--EAAEKGLLYLG-MGVSGGEEGA---R-------NGP- 144 (493)
T ss_pred ECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHH--HHHHcCCeEEe-CCCcCCHHHh---c-------CCC-
Confidence 99987765 578889999999999998875422 11111 11134677664 4532122200 0 454
Q ss_pred EEEeeccCCCHHHHHHHHHHHHHhCC
Q 012479 261 SSFAVHQDVDGRATNVALGWSVALGS 286 (462)
Q Consensus 261 aliav~qd~tgea~e~a~al~~aiG~ 286 (462)
+ +-+.. +.++.+.++-+++.+|.
T Consensus 145 ~-im~GG--~~~a~~~v~pvL~~ia~ 167 (493)
T PLN02350 145 S-LMPGG--SFEAYKNIEDILEKVAA 167 (493)
T ss_pred e-EEecC--CHHHHHHHHHHHHHHhh
Confidence 4 44455 67899999999999995
No 57
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.25 E-value=7.4e-11 Score=119.70 Aligned_cols=150 Identities=15% Similarity=0.117 Sum_probs=94.2
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc--------CceecC--CCcCCHhhhhccCCe
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--------GFTEEN--GTLGDIYETISGSDL 181 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~--------G~~~~d--~~~~~~~eav~~ADv 181 (462)
+||+|||+|+||.++|.+|.+. |++|.++.|..+. .+...+. |..... ....+.+|+++++|+
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~------G~~V~~~~r~~~~-~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~ 77 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASK------GVPVRLWARRPEF-AAALAAERENREYLPGVALPAELYPTADPEEALAGADF 77 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHC------CCeEEEEeCCHHH-HHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCE
Confidence 7999999999999999999999 9999888775333 3333322 311000 014578888999999
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEE-EEeccch-----HHHhhhccc--cCCCCccEEecccCCCchhhHHhhhcCcc
Q 012479 182 VLLLISDAAQADNYEKIFSCMKPNSIL-GLSHGFL-----LGHLQSMGL--DFPKNIGVIAVCPKGMGPSVRRLYVQGKE 253 (462)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~gaiL-~~a~G~~-----i~~~~~~~i--~~p~~v~VV~v~Pngpg~~vr~lf~~G~~ 253 (462)
||+++|+....+++ +.++++.+| +.+.|+. ...+.+ .+ .....+ +++..|+.+...
T Consensus 78 Vi~~v~~~~~~~v~----~~l~~~~~vi~~~~Gi~~~~~~~~~l~~-~l~~~~~~~~-~~~~gP~~a~~~---------- 141 (328)
T PRK14618 78 AVVAVPSKALRETL----AGLPRALGYVSCAKGLAPDGGRLSELAR-VLEFLTQARV-AVLSGPNHAEEI---------- 141 (328)
T ss_pred EEEECchHHHHHHH----HhcCcCCEEEEEeeccccCCCccchHHH-HHHHhcCCCe-EEEECccHHHHH----------
Confidence 99999999776665 445667654 4666763 222221 00 011222 346677665444
Q ss_pred ccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 254 INGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 254 ~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~ 287 (462)
++|.+.+... ...+.+..+.+..++...|..
T Consensus 142 --~~~~~~~~~~-~~~~~~~~~~v~~ll~~~~~~ 172 (328)
T PRK14618 142 --ARFLPAATVV-ASPEPGLARRVQAAFSGPSFR 172 (328)
T ss_pred --HcCCCeEEEE-EeCCHHHHHHHHHHhCCCcEE
Confidence 2344432222 223677889999999988853
No 58
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=99.25 E-value=3.5e-10 Score=113.00 Aligned_cols=191 Identities=18% Similarity=0.126 Sum_probs=122.2
Q ss_pred EEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchh-HHHH
Q 012479 116 VIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADN 194 (462)
Q Consensus 116 IIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a-~~~v 194 (462)
|||+|+||.++|++|.++ |++|++++|+.+ ..+...+.|... ..+..++++++|+||+++|+.. ..++
T Consensus 1 ~IGlG~mG~~mA~~L~~~------G~~V~v~dr~~~-~~~~l~~~g~~~----~~s~~~~~~~advVil~vp~~~~~~~v 69 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKA------GHPVRVFDLFPD-AVEEAVAAGAQA----AASPAEAAEGADRVITMLPAGQHVISV 69 (288)
T ss_pred CCcccHhHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHcCCee----cCCHHHHHhcCCEEEEeCCChHHHHHH
Confidence 699999999999999999 999888776644 456666678764 5688899999999999999855 4677
Q ss_pred H---HHHHhcCCCCcEEEEeccchHH---HhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeeccC
Q 012479 195 Y---EKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQD 268 (462)
Q Consensus 195 l---~eI~~~Lk~gaiL~~a~G~~i~---~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~qd 268 (462)
+ +++.+.+++|++|++++++... .+.+ .....+++++-. |-.-+.. ..+. |-..+++ ..
T Consensus 70 ~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~--~~~~~g~~~vda-Pv~Gg~~---~a~~-------g~l~~~~-gg- 134 (288)
T TIGR01692 70 YSGDEGILPKVAKGSLLIDCSTIDPDSARKLAE--LAAAHGAVFMDA-PVSGGVG---GARA-------GTLTFMV-GG- 134 (288)
T ss_pred HcCcchHhhcCCCCCEEEECCCCCHHHHHHHHH--HHHHcCCcEEEC-CCCCCHH---HHhh-------CcEEEEE-CC-
Confidence 7 5788999999999999887543 2222 111246777653 6432222 2232 4444333 33
Q ss_pred CCHHHHHHHHHHHHHhCCCcccccch-hhhccccchhhhHhHHhHHHHHHHHHHHHHHHcCCCHHHHHH
Q 012479 269 VDGRATNVALGWSVALGSPFTFATTL-EQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYK 336 (462)
Q Consensus 269 ~tgea~e~a~al~~aiG~~~viettf-~~E~~~dlfgeqtvL~G~~paliea~~d~~v~~G~~~e~A~~ 336 (462)
+.+..+.+..+++.+|.. ++..-. ..-....+. ....+.+.+.++.|++ ..+.+.|++++..+.
T Consensus 135 -~~~~~~~~~~~l~~~g~~-~~~~g~~g~g~~~Kl~-~n~~~~~~~~~~~Ea~-~la~~~Gld~~~~~~ 199 (288)
T TIGR01692 135 -VAEEFAAAEPVLGPMGRN-IVHCGDHGAGQAAKIC-NNMLLGISMIGTAEAM-ALGEKLGLDPKVLFE 199 (288)
T ss_pred -CHHHHHHHHHHHHHhcCC-eEeeCCCCHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHHcCCCHHHHHH
Confidence 457889999999999964 222211 010111111 1111222222334433 345789999987765
No 59
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.25 E-value=4.4e-10 Score=115.29 Aligned_cols=198 Identities=14% Similarity=0.110 Sum_probs=120.9
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcC---------ceecC--CCcCCHhhhhccC
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG---------FTEEN--GTLGDIYETISGS 179 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G---------~~~~d--~~~~~~~eav~~A 179 (462)
++||+|||.|+||.++|..|.+. | +++++.++ +...+...+.+ +...+ ....+..++++++
T Consensus 7 ~mkI~IiGaGa~G~alA~~La~~------g-~v~l~~~~-~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~a 78 (341)
T PRK12439 7 EPKVVVLGGGSWGTTVASICARR------G-PTLQWVRS-AETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCA 78 (341)
T ss_pred CCeEEEECCCHHHHHHHHHHHHC------C-CEEEEeCC-HHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcC
Confidence 37999999999999999999998 7 45555554 33333333322 11000 0134677889999
Q ss_pred CeEEEeecchhHHHHHHHHHhcCCCCc-EEEEeccchH-------HHhhhccccCCCCccEEecccCCCchhhHHhhhcC
Q 012479 180 DLVLLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLL-------GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251 (462)
Q Consensus 180 DvViLavpd~a~~~vl~eI~~~Lk~ga-iL~~a~G~~i-------~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G 251 (462)
|+||+++|++...+++++|.|++++++ +|+...|+.. ..+.+ .+|....++...|+.+...
T Consensus 79 DlVilavps~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~---~l~~~~~~~l~GP~~a~ev-------- 147 (341)
T PRK12439 79 DVVVMGVPSHGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEE---VLPGHPAGILAGPNIAREV-------- 147 (341)
T ss_pred CEEEEEeCHHHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHH---HcCCCCeEEEECCCHHHHH--------
Confidence 999999999999999999999998887 5678888864 23333 2343333567777665444
Q ss_pred ccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHH---HHHHHHHHHHHcC
Q 012479 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG---IVESLFRRFTENG 328 (462)
Q Consensus 252 ~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~pa---liea~~d~~v~~G 328 (462)
++|.++.+.+... +.+..+.+.+++..-|. .-....|+.+.+ ++|.+-- +.-.+.+ +...|
T Consensus 148 ----~~g~~t~~via~~-~~~~~~~v~~lf~~~~~--------~v~~s~Di~gve--~~~alkNv~aia~G~~~-g~~~g 211 (341)
T PRK12439 148 ----AEGYAAAAVLAMP-DQHLATRLSPLFRTRRF--------RVYTTDDVVGVE--MAGALKNVFAIAVGMGY-SLGIG 211 (341)
T ss_pred ----HcCCCeEEEEEeC-CHHHHHHHHHHhCCCCE--------EEEEcCchHHHH--HHHHHHHHHHHHHHHHH-HhcCC
Confidence 2467664443332 34444555555544442 234456666655 6666663 3333444 33556
Q ss_pred CCHHHH-HHHHHHHHH
Q 012479 329 MNEDLA-YKNTVECIT 343 (462)
Q Consensus 329 ~~~e~A-~~~~~e~i~ 343 (462)
-...-| ...+++|+.
T Consensus 212 ~n~~aali~~~~~E~~ 227 (341)
T PRK12439 212 ENTRAMVIARALREMT 227 (341)
T ss_pred chHHHHHHHHHHHHHH
Confidence 444322 224555555
No 60
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=99.23 E-value=2e-11 Score=109.28 Aligned_cols=114 Identities=26% Similarity=0.314 Sum_probs=73.4
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchhH
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a~ 191 (462)
.||+|||.|+.|.++++.|.+. |++|...+.++..+.+++... .. +....+..|+++++|+|||+|||+++
T Consensus 11 l~I~iIGaGrVG~~La~aL~~a------g~~v~~v~srs~~sa~~a~~~--~~-~~~~~~~~~~~~~aDlv~iavpDdaI 81 (127)
T PF10727_consen 11 LKIGIIGAGRVGTALARALARA------GHEVVGVYSRSPASAERAAAF--IG-AGAILDLEEILRDADLVFIAVPDDAI 81 (127)
T ss_dssp -EEEEECTSCCCCHHHHHHHHT------TSEEEEESSCHH-HHHHHHC----T-T-----TTGGGCC-SEEEE-S-CCHH
T ss_pred cEEEEECCCHHHHHHHHHHHHC------CCeEEEEEeCCcccccccccc--cc-cccccccccccccCCEEEEEechHHH
Confidence 6999999999999999999999 987654443333444444432 11 22256788999999999999999999
Q ss_pred HHHHHHHHhc--CCCCcEEEEeccch-HHHhhhccccCCCCccEEeccc
Q 012479 192 ADNYEKIFSC--MKPNSILGLSHGFL-LGHLQSMGLDFPKNIGVIAVCP 237 (462)
Q Consensus 192 ~~vl~eI~~~--Lk~gaiL~~a~G~~-i~~~~~~~i~~p~~v~VV~v~P 237 (462)
.++.++|... .++|++|.+++|-. ...++- .-..+..+..+||
T Consensus 82 ~~va~~La~~~~~~~g~iVvHtSGa~~~~vL~p---~~~~Ga~~~s~HP 127 (127)
T PF10727_consen 82 AEVAEQLAQYGAWRPGQIVVHTSGALGSDVLAP---ARERGAIVASLHP 127 (127)
T ss_dssp HHHHHHHHCC--S-TT-EEEES-SS--GGGGHH---HHHTT-EEEEEEE
T ss_pred HHHHHHHHHhccCCCCcEEEECCCCChHHhhhh---HHHCCCeEEEeCc
Confidence 9999999987 89999999999853 322221 1123556677777
No 61
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=99.22 E-value=4.2e-10 Score=120.37 Aligned_cols=147 Identities=17% Similarity=0.133 Sum_probs=103.2
Q ss_pred EEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc--C--ceecCCCcCCHhhhh---ccCCeEEEe
Q 012479 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--G--FTEENGTLGDIYETI---SGSDLVLLL 185 (462)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~--G--~~~~d~~~~~~~eav---~~ADvViLa 185 (462)
+|||||+|+||.++|+||.++ |++|++++|+.++..+...+. | +.. ..+.++++ +++|+|+++
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~------G~~V~v~drt~~~~~~l~~~~~~g~~~~~----~~s~~e~v~~l~~~dvIil~ 70 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADH------GFTVSVYNRTPEKTDEFLAEHAKGKKIVG----AYSIEEFVQSLERPRKIMLM 70 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhc------CCeEEEEeCCHHHHHHHHhhccCCCCcee----cCCHHHHHhhcCCCCEEEEE
Confidence 489999999999999999999 999998888755544333321 2 332 45677766 468999999
Q ss_pred ecc-hhHHHHHHHHHhcCCCCcEEEEeccch----HHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCce
Q 012479 186 ISD-AAQADNYEKIFSCMKPNSILGLSHGFL----LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (462)
Q Consensus 186 vpd-~a~~~vl~eI~~~Lk~gaiL~~a~G~~----i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~ 260 (462)
+|+ .+..++++++.|+|++|++|++.+-.. ...... ...+++.+|.....|-....+ .|.
T Consensus 71 v~~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~---l~~~gi~fvdapVsGG~~gA~-----------~G~- 135 (467)
T TIGR00873 71 VKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKE---LKAKGILFVGSGVSGGEEGAR-----------KGP- 135 (467)
T ss_pred CCCcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHH---HHhcCCEEEcCCCCCCHHHHh-----------cCC-
Confidence 998 556779999999999999999887432 112111 224578877655554222211 354
Q ss_pred EEEeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 261 SSFAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 261 aliav~qd~tgea~e~a~al~~aiG~~ 287 (462)
+ +-+.. +.++.+.++-+++.++..
T Consensus 136 ~-im~GG--~~~a~~~~~p~L~~ia~~ 159 (467)
T TIGR00873 136 S-IMPGG--SAEAWPLVAPIFQKIAAK 159 (467)
T ss_pred c-CCCCC--CHHHHHHHHHHHHHHhhh
Confidence 4 33454 678999999999999964
No 62
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=99.21 E-value=9.1e-10 Score=117.89 Aligned_cols=151 Identities=14% Similarity=0.091 Sum_probs=102.4
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH---cCceecCCCcCCHhhhhc---cCCeEEE
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETIS---GSDLVLL 184 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~---~G~~~~d~~~~~~~eav~---~ADvViL 184 (462)
|.+|||||+|+||.++|+||.++ |++|.+++|+.++..+..+. .|... ....+++|+++ ++|+|++
T Consensus 1 ~~~IgvIGLG~MG~~lA~nL~~~------G~~V~v~dr~~~~~~~l~~~~~~~g~~i--~~~~s~~e~v~~l~~~d~Iil 72 (470)
T PTZ00142 1 MSDIGLIGLAVMGQNLALNIASR------GFKISVYNRTYEKTEEFVKKAKEGNTRV--KGYHTLEELVNSLKKPRKVIL 72 (470)
T ss_pred CCEEEEEeEhHHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHhhhhcCCcc--eecCCHHHHHhcCCCCCEEEE
Confidence 36899999999999999999999 99998888875543333221 25321 12568888886 5899999
Q ss_pred eecchh-HHHHHHHHHhcCCCCcEEEEeccch----HHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCc
Q 012479 185 LISDAA-QADNYEKIFSCMKPNSILGLSHGFL----LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (462)
Q Consensus 185 avpd~a-~~~vl~eI~~~Lk~gaiL~~a~G~~----i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv 259 (462)
++||.. +.++++++.|+|++|++|++.+-.. .....+ ...+++.|+. +|-.-|..- =+ .|-
T Consensus 73 ~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~---l~~~Gi~fld-apVSGG~~g---A~-------~G~ 138 (470)
T PTZ00142 73 LIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKR---CEEKGILYLG-MGVSGGEEG---AR-------YGP 138 (470)
T ss_pred EeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHH---HHHcCCeEEc-CCCCCCHHH---Hh-------cCC
Confidence 977665 4678899999999999998887432 112111 2235677664 342212210 11 354
Q ss_pred eEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 260 NSSFAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 260 ~aliav~qd~tgea~e~a~al~~aiG~~ 287 (462)
+ +-+.. +.++.+.++-+++.+|..
T Consensus 139 -~-lm~GG--~~~a~~~~~piL~~ia~~ 162 (470)
T PTZ00142 139 -S-LMPGG--NKEAYDHVKDILEKCSAK 162 (470)
T ss_pred -E-EEEeC--CHHHHHHHHHHHHHHhhh
Confidence 4 44455 578999999999999964
No 63
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=99.21 E-value=8.3e-10 Score=111.07 Aligned_cols=195 Identities=15% Similarity=0.106 Sum_probs=123.9
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhcc---CCeEEEeecc
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG---SDLVLLLISD 188 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~---ADvViLavpd 188 (462)
++|||||+|+||.++|++|.+. |++|+++++..+ ..+.+.+.|... ..+.+|+++. +|+|++++|+
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~------g~~v~v~dr~~~-~~~~~~~~g~~~----~~~~~e~~~~~~~~dvvi~~v~~ 69 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRG------GHEVVGYDRNPE-AVEALAEEGATG----ADSLEELVAKLPAPRVVWLMVPA 69 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHC------CCeEEEEECCHH-HHHHHHHCCCee----cCCHHHHHhhcCCCCEEEEEecC
Confidence 4899999999999999999998 999888776644 345556678775 5678888875 6999999999
Q ss_pred h-hHHHHHHHHHhcCCCCcEEEEeccchH---HHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEe
Q 012479 189 A-AQADNYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFA 264 (462)
Q Consensus 189 ~-a~~~vl~eI~~~Lk~gaiL~~a~G~~i---~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~alia 264 (462)
. ...++++.+.+.+++|+++++++.... ..+.+ ..-..++.++- +|..-+..-. + .|. .++
T Consensus 70 ~~~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~--~~~~~g~~~~d-apvsG~~~~a---~-------~g~-~~~- 134 (301)
T PRK09599 70 GEITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAE--LLAEKGIHFVD-VGTSGGVWGL---E-------RGY-CLM- 134 (301)
T ss_pred CcHHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHH--HHHHcCCEEEe-CCCCcCHHHH---h-------cCC-eEE-
Confidence 8 667788889999999998887754432 11211 11134677875 7754232210 1 354 433
Q ss_pred eccCCCHHHHHHHHHHHHHhCCC---cccccch-hhhccccchhhhHhHHhHHHHHHHHHHHHHHH--cCCCHHHHHH
Q 012479 265 VHQDVDGRATNVALGWSVALGSP---FTFATTL-EQEYRSDIFGERGILLGAVHGIVESLFRRFTE--NGMNEDLAYK 336 (462)
Q Consensus 265 v~qd~tgea~e~a~al~~aiG~~---~viettf-~~E~~~dlfgeqtvL~G~~paliea~~d~~v~--~G~~~e~A~~ 336 (462)
+.. +.+..+.++.+++.+|.. .++..-. -.-...++. .+.++.+.+.++.|++ ..+.+ .|++++..+.
T Consensus 135 ~gG--~~~~~~~~~~~l~~~~~~~~~~~~~~G~~G~g~~~Kl~-~n~l~~~~~~~~aEa~-~l~~~~~~gld~~~~~~ 208 (301)
T PRK09599 135 IGG--DKEAVERLEPIFKALAPRAEDGYLHAGPVGAGHFVKMV-HNGIEYGMMQAYAEGF-ELLEASRFDLDLAAVAE 208 (301)
T ss_pred ecC--CHHHHHHHHHHHHHHcccccCCeEeECCCcHHHHHHHH-HHHHHHHHHHHHHHHH-HHHHHcCCCCCHHHHHH
Confidence 343 578899999999999971 1221110 000111111 1223333333444433 34455 8999887665
No 64
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=99.18 E-value=4.7e-10 Score=108.02 Aligned_cols=155 Identities=20% Similarity=0.162 Sum_probs=104.4
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH-cCceecCCCcCCHhhhhccCCeEEEeecch
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLGDIYETISGSDLVLLLISDA 189 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~-~G~~~~d~~~~~~~eav~~ADvViLavpd~ 189 (462)
||+|+|||.|+||.++|+++.+. |++|+++.++.+++.+.+.+ .+... +..+++++++.+|+|||++|-.
T Consensus 1 m~~~~i~GtGniG~alA~~~a~a------g~eV~igs~r~~~~~~a~a~~l~~~i---~~~~~~dA~~~aDVVvLAVP~~ 71 (211)
T COG2085 1 MMIIAIIGTGNIGSALALRLAKA------GHEVIIGSSRGPKALAAAAAALGPLI---TGGSNEDAAALADVVVLAVPFE 71 (211)
T ss_pred CcEEEEeccChHHHHHHHHHHhC------CCeEEEecCCChhHHHHHHHhhcccc---ccCChHHHHhcCCEEEEeccHH
Confidence 58999999999999999999999 99999998876655544433 34332 1568999999999999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEecc-----chH-------------HHhhhccccCCCCccEEecccCCCchhhHHhhhcC
Q 012479 190 AQADNYEKIFSCMKPNSILGLSHG-----FLL-------------GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251 (462)
Q Consensus 190 a~~~vl~eI~~~Lk~gaiL~~a~G-----~~i-------------~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G 251 (462)
.+.++++++...+. |++|+++.= +.. ..+++ .+|.. +||..-=+.+... +.++
T Consensus 72 a~~~v~~~l~~~~~-~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~---~lp~a-kVVkAFn~i~a~~----l~~~ 142 (211)
T COG2085 72 AIPDVLAELRDALG-GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAK---LLPGA-KVVKAFNTIPAAV----LADL 142 (211)
T ss_pred HHHhHHHHHHHHhC-CeEEEecCCCccccCCccccccCCCCCcHHHHHHH---HCCCc-chhhhhcccCHHH----hccC
Confidence 99999999998886 888775531 100 01111 22222 4443222333333 2322
Q ss_pred ccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 252 ~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~ 287 (462)
... +.....++| . .+.++++.+.+|.+.+|..
T Consensus 143 ~~~-~~~~~v~va-g--DD~~Ak~~v~~L~~~iG~~ 174 (211)
T COG2085 143 AKP-GGRRDVLVA-G--DDAEAKAVVAELAEDIGFR 174 (211)
T ss_pred CCc-CCceeEEEe-c--CcHHHHHHHHHHHHhcCcc
Confidence 111 112333344 2 3678999999999999975
No 65
>PRK06444 prephenate dehydrogenase; Provisional
Probab=99.15 E-value=3.9e-10 Score=107.94 Aligned_cols=126 Identities=14% Similarity=0.008 Sum_probs=96.9
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchh
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a 190 (462)
+||+|||. |.||..++..++++ |+.|. +++||+||||+|+..
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~------g~~v~-------------------------------~~~~DlVilavPv~~ 43 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDN------GLGVY-------------------------------IKKADHAFLSVPIDA 43 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhC------CCEEE-------------------------------ECCCCEEEEeCCHHH
Confidence 58999998 99999999999999 98764 247899999999999
Q ss_pred HHHHHHHHHhcCCCCcEEEEeccchHHHhhhccccCCCCccEEecccC-CCchhhHHhhhcCccccCCCceEEEeeccCC
Q 012479 191 QADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPK-GMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (462)
Q Consensus 191 ~~~vl~eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pn-gpg~~vr~lf~~G~~~~G~Gv~aliav~qd~ 269 (462)
..++++++. .+|+|+++++-...+ ...+||+.||+ ||.+...++| .+++++ .++.
T Consensus 44 ~~~~i~~~~------~~v~Dv~SvK~~i~~-------~~~~~vg~HPMfGp~~a~~~lf----------~~~iv~-~~~~ 99 (197)
T PRK06444 44 ALNYIESYD------NNFVEISSVKWPFKK-------YSGKIVSIHPLFGPMSYNDGVH----------RTVIFI-NDIS 99 (197)
T ss_pred HHHHHHHhC------CeEEeccccCHHHHH-------hcCCEEecCCCCCCCcCccccc----------ceEEEE-CCCC
Confidence 999998875 278999999753221 13479999998 4444432222 255444 5566
Q ss_pred CHHHHHHHHHHHHHhCCCcccccchhhhcccc
Q 012479 270 DGRATNVALGWSVALGSPFTFATTLEQEYRSD 301 (462)
Q Consensus 270 tgea~e~a~al~~aiG~~~viettf~~E~~~d 301 (462)
++++++.++++++ |+ +++++|.++|++.-
T Consensus 100 ~~~~~~~~~~l~~--G~-~~~~~t~eeHD~~~ 128 (197)
T PRK06444 100 RDNYLNEINEMFR--GY-HFVEMTADEHDLLM 128 (197)
T ss_pred CHHHHHHHHHHHc--CC-EEEEeCHHHHHHHH
Confidence 7788899999998 74 79999999998653
No 66
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=99.12 E-value=4.6e-09 Score=110.15 Aligned_cols=200 Identities=16% Similarity=0.120 Sum_probs=119.5
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHH-------------------HcC-ceecCCCcCC
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-------------------AAG-FTEENGTLGD 171 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~-------------------~~G-~~~~d~~~~~ 171 (462)
|||+|||+|.||.++|.+|.+. |++|+++++...+ .+... +.| +.. ..+
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~------G~~V~~~d~~~~~-v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~----~~~ 69 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADL------GHEVTGVDIDQEK-VDKLNKGKSPIYEPGLDELLAKALAAGRLRA----TTD 69 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhc------CCeEEEEECCHHH-HHHhhcCCCCCCCCCHHHHHHHhhhcCCeEE----ECC
Confidence 5899999999999999999999 9998766654332 22221 123 332 457
Q ss_pred HhhhhccCCeEEEeecchh----------HHHHHHHHHhcCCCCcEEEEeccchHH---Hh----hhccccCCCCcc-EE
Q 012479 172 IYETISGSDLVLLLISDAA----------QADNYEKIFSCMKPNSILGLSHGFLLG---HL----QSMGLDFPKNIG-VI 233 (462)
Q Consensus 172 ~~eav~~ADvViLavpd~a----------~~~vl~eI~~~Lk~gaiL~~a~G~~i~---~~----~~~~i~~p~~v~-VV 233 (462)
..+++++||+||+++|... ...++++|.+++++|++|++.+++... .+ .+.........+ .+
T Consensus 70 ~~~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v 149 (411)
T TIGR03026 70 YEDAIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYL 149 (411)
T ss_pred HHHHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceE
Confidence 7888999999999999653 566777899999999998887754211 11 110000011222 25
Q ss_pred ecccCC--CchhhHHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhC-CCcccccchhhhccccchhhhHhHH
Q 012479 234 AVCPKG--MGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALG-SPFTFATTLEQEYRSDIFGERGILL 310 (462)
Q Consensus 234 ~v~Png--pg~~vr~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG-~~~viettf~~E~~~dlfgeqtvL~ 310 (462)
..+|.. +|..+.+.+. .+.++. . .+.+..+.+..+++.++ ...+..++. ..-+.-.+-+.+ +.
T Consensus 150 ~~~Pe~~~~G~~~~~~~~---------~~~iv~-G--~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~Ae~~Kl~~N~-~~ 215 (411)
T TIGR03026 150 AYNPEFLREGNAVHDLLN---------PDRIVG-G--ETEEAGEAVAELYAPIIEDGPVLVTSI-ETAEMIKLAENT-FR 215 (411)
T ss_pred EECCCcCCCCChhhhhcC---------CCEEEE-e--CCHHHHHHHHHHHHHhccCCCEEcCCH-HHHHHHHHHHHH-HH
Confidence 667743 3333222221 223233 3 37889999999999997 332222221 211111121222 22
Q ss_pred hHHHHHHHHHHHHHHHcCCCHHHHHH
Q 012479 311 GAVHGIVESLFRRFTENGMNEDLAYK 336 (462)
Q Consensus 311 G~~paliea~~d~~v~~G~~~e~A~~ 336 (462)
+.--+++.-+...+.+.|+++++.+.
T Consensus 216 a~~ia~~nE~~~la~~~GiD~~~v~~ 241 (411)
T TIGR03026 216 AVKIAFANELARICEALGIDVYEVIE 241 (411)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 22234666667777888998877665
No 67
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=99.11 E-value=8.6e-10 Score=112.29 Aligned_cols=164 Identities=15% Similarity=0.113 Sum_probs=123.9
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhh-ccCCeEEEeecchh
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI-SGSDLVLLLISDAA 190 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav-~~ADvViLavpd~a 190 (462)
.+|||||+|+||.=+|.-|.+. |+.+++..|.+ --..|+..|..- ...+.+.+ +..|+|++||.-..
T Consensus 53 l~IaIIGfGnmGqflAetli~a------Gh~li~hsRsd--yssaa~~yg~~~----ft~lhdlcerhpDvvLlctsils 120 (480)
T KOG2380|consen 53 LVIAIIGFGNMGQFLAETLIDA------GHGLICHSRSD--YSSAAEKYGSAK----FTLLHDLCERHPDVVLLCTSILS 120 (480)
T ss_pred eEEEEEecCcHHHHHHHHHHhc------CceeEecCcch--hHHHHHHhcccc----cccHHHHHhcCCCEEEEEehhhh
Confidence 6899999999999999999999 99888887765 345556666542 34455544 57899999999999
Q ss_pred HHHHHHHHHhc-CCCCcEEEEeccch---HHHhhhccccCCCCccEEecccC-CCchhhHHhhhcCccccCCCceEEEee
Q 012479 191 QADNYEKIFSC-MKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIAVCPK-GMGPSVRRLYVQGKEINGAGINSSFAV 265 (462)
Q Consensus 191 ~~~vl~eI~~~-Lk~gaiL~~a~G~~---i~~~~~~~i~~p~~v~VV~v~Pn-gpg~~vr~lf~~G~~~~G~Gv~aliav 265 (462)
+..++...-+. +|.|+++++.-.++ ...+++ .+|+|++++.+||+ ||-.+ . . + ++|.|.++--
T Consensus 121 iekilatypfqrlrrgtlfvdvlSvKefek~lfek---YLPkdfDIlctHpmfGPksv-n---h-~----wqglpfVydk 188 (480)
T KOG2380|consen 121 IEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEK---YLPKDFDILCTHPMFGPKSV-N---H-E----WQGLPFVYDK 188 (480)
T ss_pred HHHHHHhcCchhhccceeEeeeeecchhHHHHHHH---hCccccceEeecCCcCCCcC-C---C-c----cccCceEEEE
Confidence 99998876655 89999988776653 333444 78999999999998 55422 1 1 1 4789987654
Q ss_pred ccC----CCHHHHHHHHHHHHHhCCCcccccchhhhccc
Q 012479 266 HQD----VDGRATNVALGWSVALGSPFTFATTLEQEYRS 300 (462)
Q Consensus 266 ~qd----~tgea~e~a~al~~aiG~~~viettf~~E~~~ 300 (462)
+.- ...+..|...+++...|+ ..++.+.++|++.
T Consensus 189 vRig~~~~r~ercE~fleIf~cegc-kmVemS~eeHDki 226 (480)
T KOG2380|consen 189 VRIGYAASRPERCEFFLEIFACEGC-KMVEMSYEEHDKI 226 (480)
T ss_pred eeccccccchHHHHHHHHHHHhcCC-eEEEEEeeccccc
Confidence 432 226889999999999998 4777777888755
No 68
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=99.11 E-value=2.6e-09 Score=115.35 Aligned_cols=150 Identities=15% Similarity=0.184 Sum_probs=111.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHH-----------HHHcC-------------cee
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAG-------------FTE 164 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~-----------A~~~G-------------~~~ 164 (462)
..+++|+|||+|.||..||.++..+ |++|++.++..+. .+. ..+.| +..
T Consensus 5 ~~i~~V~VIGaG~MG~gIA~~la~a------G~~V~l~D~~~e~-l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~ 77 (507)
T PRK08268 5 PSIATVAVIGAGAMGAGIAQVAAQA------GHTVLLYDARAGA-AAAARDGIAARLAKLVEKGKLTAEQADAALARLRP 77 (507)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhC------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE
Confidence 3468999999999999999999999 9999887766443 333 24455 232
Q ss_pred cCCCcCCHhhhhccCCeEEEeecchhHH--HHHHHHHhcCCCCcEE-EEeccchHHHhhhccccCCCCccEEecccCCCc
Q 012479 165 ENGTLGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMG 241 (462)
Q Consensus 165 ~d~~~~~~~eav~~ADvViLavpd~a~~--~vl~eI~~~Lk~gaiL-~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg 241 (462)
..+.++ +.+||+||-++|..... .++.++...++++++| +.++.+.+..+.. .....-+++++|.--|.
T Consensus 78 ----~~~~~~-~~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~~la~---~~~~p~r~~G~hff~Pa 149 (507)
T PRK08268 78 ----VEALAD-LADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSITAIAA---ALKHPERVAGLHFFNPV 149 (507)
T ss_pred ----eCCHHH-hCCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCcccEEEEeecCCc
Confidence 356654 56999999999987764 4777888888999988 5778887765554 22222468898988887
Q ss_pred hhhHHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 242 PSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 242 ~~vr~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~ 287 (462)
+.. ...- ++.+...+.+.++.+..+++.+|..
T Consensus 150 ~v~-------------~LvE-vv~g~~Ts~~~~~~~~~l~~~lgk~ 181 (507)
T PRK08268 150 PLM-------------KLVE-VVSGLATDPAVADALYALARAWGKT 181 (507)
T ss_pred ccC-------------eeEE-EeCCCCCCHHHHHHHHHHHHHcCCc
Confidence 772 2333 4556778899999999999999975
No 69
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.10 E-value=1.8e-09 Score=110.54 Aligned_cols=153 Identities=16% Similarity=0.141 Sum_probs=111.3
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHH-----------HHcCceecC-----CCcCCHhh
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEEN-----GTLGDIYE 174 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A-----------~~~G~~~~d-----~~~~~~~e 174 (462)
++||+|||.|.||.++|..+..+ |++|++.++..+ ..+.+ .+.|..... ..+.++++
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~a------G~~V~l~D~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~ 79 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAH------GLDVVAWDPAPG-AEAALRANVANAWPALERQGLAPGASPARLRFVATIEA 79 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHH
Confidence 58999999999999999999999 999988776533 12221 122221100 11457889
Q ss_pred hhccCCeEEEeecchhHH--HHHHHHHhcCCCCcEEE-EeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcC
Q 012479 175 TISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251 (462)
Q Consensus 175 av~~ADvViLavpd~a~~--~vl~eI~~~Lk~gaiL~-~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G 251 (462)
++++||+|+-++|..... .++.+|..+++++++|. -++++.+..+.+ .+...-+++.+||--|.+..+
T Consensus 80 av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~l~~s~la~---~~~~p~R~~g~HffnP~~~~p------ 150 (321)
T PRK07066 80 CVADADFIQESAPEREALKLELHERISRAAKPDAIIASSTSGLLPTDFYA---RATHPERCVVGHPFNPVYLLP------ 150 (321)
T ss_pred HhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCccCHHHHHH---hcCCcccEEEEecCCccccCc------
Confidence 999999999999977653 58889999999999764 445666655544 223334799999988887721
Q ss_pred ccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 252 ~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~ 287 (462)
.-- +.++...+++.++.+.+++..+|..
T Consensus 151 -------LVE-Vv~g~~T~~e~~~~~~~f~~~lGk~ 178 (321)
T PRK07066 151 -------LVE-VLGGERTAPEAVDAAMGIYRALGMR 178 (321)
T ss_pred -------eEE-EeCCCCCCHHHHHHHHHHHHHcCCE
Confidence 122 4567888999999999999999964
No 70
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.05 E-value=4.4e-09 Score=106.22 Aligned_cols=79 Identities=16% Similarity=0.233 Sum_probs=66.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecc
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd 188 (462)
.+ |||+|||+|+||.++|+.|.+. |++|.++.|... .++.++++++|+||+++|+
T Consensus 3 ~~-m~I~iiG~G~~G~~lA~~l~~~------G~~V~~~~r~~~------------------~~~~~~~~~advvi~~vp~ 57 (308)
T PRK14619 3 QP-KTIAILGAGAWGSTLAGLASAN------GHRVRVWSRRSG------------------LSLAAVLADADVIVSAVSM 57 (308)
T ss_pred CC-CEEEEECccHHHHHHHHHHHHC------CCEEEEEeCCCC------------------CCHHHHHhcCCEEEEECCh
Confidence 35 7999999999999999999999 999988877531 2567888999999999999
Q ss_pred hhHHHHHHHHHhc-CCCCcEEEEec
Q 012479 189 AAQADNYEKIFSC-MKPNSILGLSH 212 (462)
Q Consensus 189 ~a~~~vl~eI~~~-Lk~gaiL~~a~ 212 (462)
..+.++++++.++ ++++++|+++.
T Consensus 58 ~~~~~v~~~l~~~~~~~~~ivi~~s 82 (308)
T PRK14619 58 KGVRPVAEQVQALNLPPETIIVTAT 82 (308)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEeC
Confidence 9888999988875 78888776544
No 71
>PLN02858 fructose-bisphosphate aldolase
Probab=99.04 E-value=7.6e-09 Score=122.89 Aligned_cols=199 Identities=17% Similarity=0.141 Sum_probs=121.7
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecch-
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA- 189 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~- 189 (462)
+++|||||+|+||.++|.+|.+. |++|+++++...+ .+...+.|... ..++.+++++||+||+++|+.
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~------G~~V~v~dr~~~~-~~~l~~~Ga~~----~~s~~e~~~~aDvVi~~V~~~~ 392 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKS------NFSVCGYDVYKPT-LVRFENAGGLA----GNSPAEVAKDVDVLVIMVANEV 392 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHHHcCCee----cCCHHHHHhcCCEEEEecCChH
Confidence 38999999999999999999999 9998888776443 44455567654 568899999999999999954
Q ss_pred hHHHHHH---HHHhcCCCCcEEEEeccchHH---HhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEE
Q 012479 190 AQADNYE---KIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (462)
Q Consensus 190 a~~~vl~---eI~~~Lk~gaiL~~a~G~~i~---~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~ali 263 (462)
+..+++. .+.+.+++|+++++++-+... .+.+.....+.++.++- +|-..+... = ..|-..++
T Consensus 393 ~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lD-APVsGg~~~---A-------~~G~L~im 461 (1378)
T PLN02858 393 QAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVD-APVSGGVKR---A-------AMGTLTIM 461 (1378)
T ss_pred HHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEE-ccCCCChhh---h-------hcCCceEE
Confidence 4456762 478889999999888765432 22110000014566553 343322221 0 13444434
Q ss_pred eeccCCCHHHHHHHHHHHHHhCCCccccc-chhhhccccchhhhHhHHhHHH-HHHHHHHHHHHHcCCCHHHHHHH
Q 012479 264 AVHQDVDGRATNVALGWSVALGSPFTFAT-TLEQEYRSDIFGERGILLGAVH-GIVESLFRRFTENGMNEDLAYKN 337 (462)
Q Consensus 264 av~qd~tgea~e~a~al~~aiG~~~viet-tf~~E~~~dlfgeqtvL~G~~p-aliea~~d~~v~~G~~~e~A~~~ 337 (462)
+ .. +.+.++.++.+++.+|...++-. ..-.-....+. .+ .++++.- ++.|+ +..+.++|++++..+..
T Consensus 462 v-gG--~~~~~~~~~plL~~lg~~i~~~~g~~G~a~~~KL~-nN-~l~~~~~aa~aEa-l~la~k~Gld~~~l~ev 531 (1378)
T PLN02858 462 A-SG--TDEALKSAGSVLSALSEKLYVIKGGCGAGSGVKMV-NQ-LLAGVHIASAAEA-MAFGARLGLNTRKLFDI 531 (1378)
T ss_pred E-EC--CHHHHHHHHHHHHHHhCcEEEeCCCCCHHHHHHHH-HH-HHHHHHHHHHHHH-HHHHHHcCCCHHHHHHH
Confidence 4 33 56789999999999996421101 01111111111 01 1222222 23333 34457899999987763
No 72
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=99.02 E-value=1.4e-08 Score=102.07 Aligned_cols=216 Identities=16% Similarity=0.161 Sum_probs=136.2
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHH-----------HHHcCceecC---------CCcC
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTLG 170 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~d---------~~~~ 170 (462)
+++|+|||.|.||..+|..+..+ |++|++.++..+. .+. +.+.|..... ..+.
T Consensus 5 ~~~V~ViGaG~mG~~iA~~~a~~------G~~V~l~d~~~~~-~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~ 77 (286)
T PRK07819 5 IQRVGVVGAGQMGAGIAEVCARA------GVDVLVFETTEEL-ATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTT 77 (286)
T ss_pred ccEEEEEcccHHHHHHHHHHHhC------CCEEEEEECCHHH-HHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeC
Confidence 47999999999999999999999 9999887766442 222 3334432100 0134
Q ss_pred CHhhhhccCCeEEEeecchhHH--HHHHHHHhcC-CCCcEEE-EeccchHHHhhhccccCCCCccEEecccCCCchhhHH
Q 012479 171 DIYETISGSDLVLLLISDAAQA--DNYEKIFSCM-KPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRR 246 (462)
Q Consensus 171 ~~~eav~~ADvViLavpd~a~~--~vl~eI~~~L-k~gaiL~-~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~ 246 (462)
+. +++++||+||-++|.+... +++.++...+ +++++|. -++++.+..+.. .....-+++.+|+-.|.+..
T Consensus 78 ~~-~~~~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~---~~~~~~r~~g~hf~~P~~~~-- 151 (286)
T PRK07819 78 DL-GDFADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAA---ATKRPGRVLGLHFFNPVPVL-- 151 (286)
T ss_pred CH-HHhCCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCCccEEEEecCCCcccC--
Confidence 56 5689999999999988774 4778888887 8899875 455666655543 22222369999998887772
Q ss_pred hhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHH-HhCCCcccccchhhhccccchhhhHhHHhHHHHHHHHHHHHHH
Q 012479 247 LYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSV-ALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFT 325 (462)
Q Consensus 247 lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~-aiG~~~viettf~~E~~~dlfgeqtvL~G~~paliea~~d~~v 325 (462)
+..- +.++...+++.++.+..++. .+|...+. . .|. .-| ++--.+..++...+ .++
T Consensus 152 -----------~lvE-lv~~~~T~~~~~~~~~~~~~~~lgk~pv~-v---~d~--pGf----i~nRi~~~~~~Ea~-~ll 208 (286)
T PRK07819 152 -----------PLVE-LVPTLVTSEATVARAEEFASDVLGKQVVR-A---QDR--SGF----VVNALLVPYLLSAI-RMV 208 (286)
T ss_pred -----------ceEE-EeCCCCCCHHHHHHHHHHHHHhCCCCceE-e---cCC--CCh----HHHHHHHHHHHHHH-HHH
Confidence 2334 55688899999999999988 59964211 1 111 111 11122333333333 456
Q ss_pred HcCC-CHHHHHHHHHHH---HHHHHHHHHHHhcHHHHHHhcC
Q 012479 326 ENGM-NEDLAYKNTVEC---ITGIISKIISTQGMLAVYNSFS 363 (462)
Q Consensus 326 ~~G~-~~e~A~~~~~e~---i~Gli~~li~e~G~~~m~~~vs 363 (462)
+.|+ ++++.=...... =.| .-.++...|++.+++...
T Consensus 209 ~eGv~~~~dID~~~~~g~G~p~G-pf~~~D~~Gld~~~~~~~ 249 (286)
T PRK07819 209 ESGFATAEDIDKAMVLGCAHPMG-PLRLSDLVGLDTVKAIAD 249 (286)
T ss_pred HhCCCCHHHHHHHHHhCCCCCCC-HHHHHHHhccHHHHHHHH
Confidence 7775 465533322111 115 456777778877666654
No 73
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=99.01 E-value=3.9e-08 Score=103.78 Aligned_cols=202 Identities=16% Similarity=0.096 Sum_probs=120.6
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhh---------------
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET--------------- 175 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~ea--------------- 175 (462)
++||+|||+|.||.++|.+|.+. |++|++.+++ ++..+. ...|.... .....++.
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~------G~~V~~~D~~-~~~v~~-l~~g~~~~--~e~~l~~~l~~~~~~g~l~~~~~ 72 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASR------QKQVIGVDIN-QHAVDT-INRGEIHI--VEPDLDMVVKTAVEGGYLRATTT 72 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhC------CCEEEEEeCC-HHHHHH-HHCCCCCc--CCCCHHHHHHHHhhcCceeeecc
Confidence 48999999999999999999999 9998766554 333333 33343210 01122222
Q ss_pred hccCCeEEEeecc----------hhHHHHHHHHHhcCCCCcEEEEeccchHH-------Hhhhcccc--CC----CCcc-
Q 012479 176 ISGSDLVLLLISD----------AAQADNYEKIFSCMKPNSILGLSHGFLLG-------HLQSMGLD--FP----KNIG- 231 (462)
Q Consensus 176 v~~ADvViLavpd----------~a~~~vl~eI~~~Lk~gaiL~~a~G~~i~-------~~~~~~i~--~p----~~v~- 231 (462)
+++||+||+|+|+ ..+..+++.|.+++++|++|++.+.+... .+.+.... .| .+.+
T Consensus 73 ~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f 152 (415)
T PRK11064 73 PEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADI 152 (415)
T ss_pred cccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCe
Confidence 3489999999997 46667888899999999998876654211 11111111 11 0111
Q ss_pred EEeccc--CCCchhhHHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhH
Q 012479 232 VIAVCP--KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGIL 309 (462)
Q Consensus 232 VV~v~P--ngpg~~vr~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL 309 (462)
.+...| -.+|....+... .+-++. . .+++..+.++.++..++...++.++. .+-+.-.+-+.+ +
T Consensus 153 ~v~~~PE~~~~G~~~~~~~~---------~~~vvg-G--~~~~~~~~~~~ly~~~~~~~~~~~~~-~~Ae~~Kl~~N~-~ 218 (415)
T PRK11064 153 NIAYCPERVLPGQVMVELIK---------NDRVIG-G--MTPVCSARASELYKIFLEGECVVTNS-RTAEMCKLTENS-F 218 (415)
T ss_pred EEEECCCccCCCChhhhhcC---------CCEEEE-e--CCHHHHHHHHHHHHHhcCCCeeeCCH-HHHHHHHHHHHH-H
Confidence 245677 356666443322 334332 2 36788999999999998643332322 222222222322 2
Q ss_pred HhHHHHHHHHHHHHHHHcCCCHHHHHH
Q 012479 310 LGAVHGIVESLFRRFTENGMNEDLAYK 336 (462)
Q Consensus 310 ~G~~paliea~~d~~v~~G~~~e~A~~ 336 (462)
...--+++.-+...+-+.|+++++..+
T Consensus 219 ~a~~ia~~nE~~~lae~~GiD~~~v~~ 245 (415)
T PRK11064 219 RDVNIAFANELSLICADQGINVWELIR 245 (415)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 233334666677777788999876654
No 74
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.00 E-value=3.5e-08 Score=102.68 Aligned_cols=256 Identities=16% Similarity=0.220 Sum_probs=144.0
Q ss_pred CCCEEEEEcccchHHHHHHHHHHhhhhhcCC-------cEEEEEecCCch----hHHHHHHc--------CceecCC--C
Q 012479 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-------IVVKVGLRKGSR----SFAEARAA--------GFTEENG--T 168 (462)
Q Consensus 110 gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G-------~~Vivg~r~~~~----s~~~A~~~--------G~~~~d~--~ 168 (462)
+.+||+|||.|++|.|+|.-|.+. | ++|.++.|+..- ..+.-.+. |+...+. .
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n------~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~ 83 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGEN------TQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVA 83 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhc------CCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEE
Confidence 336899999999999999999987 6 678887766421 11111111 1111000 1
Q ss_pred cCCHhhhhccCCeEEEeecchhHHHHHHHHHh--cCCCCc-EEEEeccchHHH---------hhhccccCCCCccEEecc
Q 012479 169 LGDIYETISGSDLVLLLISDAAQADNYEKIFS--CMKPNS-ILGLSHGFLLGH---------LQSMGLDFPKNIGVIAVC 236 (462)
Q Consensus 169 ~~~~~eav~~ADvViLavpd~a~~~vl~eI~~--~Lk~ga-iL~~a~G~~i~~---------~~~~~i~~p~~v~VV~v~ 236 (462)
+.|+.+++++||+|+++||++...++++++.+ ++++++ +|+.+.|+.... +.+ .++..+-+ ..
T Consensus 84 tsdl~eav~~aDiIvlAVPsq~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e---~l~~~~~~-Ls- 158 (365)
T PTZ00345 84 VSDLKEAVEDADLLIFVIPHQFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEE---ELGIPCCA-LS- 158 (365)
T ss_pred ecCHHHHHhcCCEEEEEcChHHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHH---HhCCCeEE-EE-
Confidence 45778899999999999999999999999999 888776 467888885321 111 12222222 22
Q ss_pred cCCCchhhHHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHH-
Q 012479 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG- 315 (462)
Q Consensus 237 Pngpg~~vr~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~pa- 315 (462)
||.+. ++-. +|.++.+++... + .+.+..+.+-+... .|.-....|+.|.+ |||.+--
T Consensus 159 --GPs~A--~Eva-------~~~pt~~vias~-~---~~~a~~~~~lf~~~-----~frvy~s~Dv~GvE--l~galKNv 216 (365)
T PTZ00345 159 --GANVA--NDVA-------REEFSEATIGCE-D---KDDALIWQRLFDRP-----YFKINCVPDVIGVE--VCGALKNI 216 (365)
T ss_pred --CCCHH--HHHH-------cCCCcEEEEEeC-C---HHHHHHHHHHhCCC-----cEEEEEcCCcccch--hhHHHHHH
Confidence 44443 2222 356665554432 2 33444445555544 33334566788877 7888774
Q ss_pred --HHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHHHH----------HhcHHHHHHhcCCcchhhhchhhccCc--hh
Q 012479 316 --IVESLFRRFTENGMNEDLAYK-NTVECITGIISKIIS----------TQGMLAVYNSFSGEDKKEFEKAYSASY--YP 380 (462)
Q Consensus 316 --liea~~d~~v~~G~~~e~A~~-~~~e~i~Gli~~li~----------e~G~~~m~~~vs~~~~aeyg~~~~~~~--~~ 380 (462)
+.--+.|.+ ..|..-.-|+. .++.||.- +++.+. -.|++.|.-.|+......||..+.... ++
T Consensus 217 iAIa~Gi~dGl-~~G~N~kaalitrgl~Em~~-l~~a~g~~~~~~T~~glaG~GDLi~Tc~sSRN~~~G~~l~~g~~~~~ 294 (365)
T PTZ00345 217 IALAAGFCDGL-GLGTNTKSAIIRIGLEEMKL-FGKIFFPNVMDETFFESCGLADLITTCLGGRNVRCAAEFAKRNGKKS 294 (365)
T ss_pred HHHHHHHHHhc-CCChhHHHHHHHHHHHHHHH-HHHHhCCCCCccchhccchHhHhhhcccCCCcHHHHHHHhccCCCCC
Confidence 222222322 45654444444 56666653 444442 134555555554333445676653222 34
Q ss_pred HHHHHHHHHH-hccCChhhhH
Q 012479 381 CMEILYECYE-DVAAGSEIRS 400 (462)
Q Consensus 381 ~~~~m~e~~~-~i~~G~far~ 400 (462)
..+++++++. .+--|-.+-.
T Consensus 295 ~~~~~~~~~~~~~vEG~~t~~ 315 (365)
T PTZ00345 295 WEEIEAELLNGQKLQGTVTLK 315 (365)
T ss_pred HHHHHHHhhCCcEechHHHHH
Confidence 4444444322 3444555443
No 75
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=98.98 E-value=2.5e-08 Score=99.03 Aligned_cols=153 Identities=20% Similarity=0.219 Sum_probs=97.5
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecC-------CCcCCHhhhhccCCeEEE
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN-------GTLGDIYETISGSDLVLL 184 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d-------~~~~~~~eav~~ADvViL 184 (462)
|||+|||.|+||..+|..|.++ |++|.+..|..+ ..+...+.|+...+ ..+.+..++ +.+|+||+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~------g~~V~~~~r~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vil 72 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQA------GHDVTLVARRGA-HLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVIL 72 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECChH-HHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEE
Confidence 5899999999999999999998 888887776433 34445555763200 012344444 89999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcE-EEEeccch-HHHhhhccccCCCCccEE------ecccCCCchhhHHhhhcCccccC
Q 012479 185 LISDAAQADNYEKIFSCMKPNSI-LGLSHGFL-LGHLQSMGLDFPKNIGVI------AVCPKGMGPSVRRLYVQGKEING 256 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gai-L~~a~G~~-i~~~~~~~i~~p~~v~VV------~v~Pngpg~~vr~lf~~G~~~~G 256 (462)
++|..+..++++.+.+++.++++ |+...|+. ...+.+ .+++. .++ .+...+|+.... .|
T Consensus 73 a~k~~~~~~~~~~l~~~l~~~~~iv~~~nG~~~~~~l~~---~~~~~-~i~~~~~~~~~~~~~p~~v~~---------~~ 139 (304)
T PRK06522 73 AVKAYQLPAALPSLAPLLGPDTPVLFLQNGVGHLEELAA---YIGPE-RVLGGVVTHAAELEGPGVVRH---------TG 139 (304)
T ss_pred ecccccHHHHHHHHhhhcCCCCEEEEecCCCCcHHHHHH---hcCcc-cEEEEEEEEeeEecCCCEEEE---------cC
Confidence 99999999999999999988764 56777885 333332 23332 232 222334444311 12
Q ss_pred CCceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 257 AGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 257 ~Gv~aliav~qd~tgea~e~a~al~~aiG~~ 287 (462)
.|... +...++.. +..+.+.+++...|..
T Consensus 140 ~g~~~-ig~~~~~~-~~~~~l~~~l~~~~~~ 168 (304)
T PRK06522 140 GGRLK-IGEPDGES-AAAEALADLLNAAGLD 168 (304)
T ss_pred CCCEE-EeCCCCCc-HHHHHHHHHHHhcCCC
Confidence 45544 44333322 4456666778877754
No 76
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=98.98 E-value=2.7e-08 Score=107.46 Aligned_cols=153 Identities=12% Similarity=0.148 Sum_probs=109.6
Q ss_pred CCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHH-----------HHHcCceecC---------CCc
Q 012479 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GTL 169 (462)
Q Consensus 110 gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~d---------~~~ 169 (462)
.++||+|||.|.||..||.++.++ |++|++++++.++ .+. ..+.|..... ..+
T Consensus 4 ~~~kV~VIGaG~MG~gIA~~la~a------G~~V~l~d~~~e~-l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~ 76 (503)
T TIGR02279 4 NVVTVAVIGAGAMGAGIAQVAASA------GHQVLLYDIRAEA-LARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPV 76 (503)
T ss_pred CccEEEEECcCHHHHHHHHHHHhC------CCeEEEEeCCHHH-HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEe
Confidence 358999999999999999999999 9999888776443 222 2334421000 014
Q ss_pred CCHhhhhccCCeEEEeecchhHH--HHHHHHHhcCCCCcEEE-EeccchHHHhhhccccCCCCccEEecccCCCchhhHH
Q 012479 170 GDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRR 246 (462)
Q Consensus 170 ~~~~eav~~ADvViLavpd~a~~--~vl~eI~~~Lk~gaiL~-~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~ 246 (462)
.++++ +.+||+||-++|..... .++.++.+.++++++|. -++++.+..+.. .+....++++.|.--|.+..
T Consensus 77 ~~~~~-l~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i~~iA~---~~~~p~r~~G~HFf~Papv~-- 150 (503)
T TIGR02279 77 TDLHA-LADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSITAIAA---GLARPERVAGLHFFNPAPVM-- 150 (503)
T ss_pred CCHHH-hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHH---hcCcccceEEEeccCccccC--
Confidence 46654 57999999999976553 47788888899998764 666776654443 22333478999988877772
Q ss_pred hhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 247 LYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 247 lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~ 287 (462)
...- +..+...+++.++.+..+++.+|..
T Consensus 151 -----------~LvE-vv~g~~Ts~e~~~~~~~l~~~lgk~ 179 (503)
T TIGR02279 151 -----------ALVE-VVSGLATAAEVAEQLYETALAWGKQ 179 (503)
T ss_pred -----------ceEE-EeCCCCCCHHHHHHHHHHHHHcCCe
Confidence 2333 4557788999999999999999975
No 77
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.98 E-value=6e-08 Score=98.35 Aligned_cols=97 Identities=22% Similarity=0.286 Sum_probs=70.7
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc--Cce------ecCC--CcCCHhhhh-ccCC
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFT------EENG--TLGDIYETI-SGSD 180 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~--G~~------~~d~--~~~~~~eav-~~AD 180 (462)
|||+|||.|+||.++|..|.++ |++|.++.|... ..+.-.+. +.. ..+. ...+..+++ ..+|
T Consensus 1 MkI~IiGaGa~G~ala~~L~~~------g~~V~l~~r~~~-~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~D 73 (326)
T PRK14620 1 MKISILGAGSFGTAIAIALSSK------KISVNLWGRNHT-TFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNAT 73 (326)
T ss_pred CEEEEECcCHHHHHHHHHHHHC------CCeEEEEecCHH-HHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCC
Confidence 5799999999999999999999 998887776432 22222221 111 0000 124556666 5899
Q ss_pred eEEEeecchhHHHHHHHHHh-cCCCCc-EEEEeccch
Q 012479 181 LVLLLISDAAQADNYEKIFS-CMKPNS-ILGLSHGFL 215 (462)
Q Consensus 181 vViLavpd~a~~~vl~eI~~-~Lk~ga-iL~~a~G~~ 215 (462)
+||++||+....++++++.+ ++++++ +|+...|+.
T Consensus 74 liiiavks~~~~~~l~~l~~~~l~~~~~vv~~~nGi~ 110 (326)
T PRK14620 74 CIILAVPTQQLRTICQQLQDCHLKKNTPILICSKGIE 110 (326)
T ss_pred EEEEEeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCee
Confidence 99999999999999999998 888776 567778883
No 78
>PRK13243 glyoxylate reductase; Reviewed
Probab=98.97 E-value=1.9e-09 Score=110.61 Aligned_cols=148 Identities=22% Similarity=0.230 Sum_probs=99.5
Q ss_pred eecCccccc-----c---cccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec
Q 012479 94 VRGGRDLFN-----L---LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (462)
Q Consensus 94 ~~~~~~~f~-----~---~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~ 165 (462)
+|+|+|... . ....|.| ++|||||+|+||.++|+.|+.. |.+|+++++.... ..+...|+.
T Consensus 126 ~~~g~W~~~~~~~~~~~~~g~~L~g-ktvgIiG~G~IG~~vA~~l~~~------G~~V~~~d~~~~~--~~~~~~~~~-- 194 (333)
T PRK13243 126 VRSGEWKRRGVAWHPLMFLGYDVYG-KTIGIIGFGRIGQAVARRAKGF------GMRILYYSRTRKP--EAEKELGAE-- 194 (333)
T ss_pred HHcCCCCccccccccccccccCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCCCh--hhHHHcCCE--
Confidence 456778532 0 1257899 9999999999999999999988 9888766654322 233445654
Q ss_pred CCCcCCHhhhhccCCeEEEeecchhH-HHHHH-HHHhcCCCCcEEEEec-cch------HHHhhhccccCCCCccEEecc
Q 012479 166 NGTLGDIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVC 236 (462)
Q Consensus 166 d~~~~~~~eav~~ADvViLavpd~a~-~~vl~-eI~~~Lk~gaiL~~a~-G~~------i~~~~~~~i~~p~~v~VV~v~ 236 (462)
..+.+|++++||+|++++|.... ..++. +.+..||+|++|+.++ |-. +..+++.. ......||....
T Consensus 195 ---~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~-i~gAaLDV~~~E 270 (333)
T PRK13243 195 ---YRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGW-IAGAGLDVFEEE 270 (333)
T ss_pred ---ecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCC-eEEEEeccCCCC
Confidence 35889999999999999997665 45664 7889999999987554 421 12222211 112346777777
Q ss_pred cCCCchhhHHhhhcCccccCCCceEEEeeccC
Q 012479 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQD 268 (462)
Q Consensus 237 Pngpg~~vr~lf~~G~~~~G~Gv~aliav~qd 268 (462)
|- |.+. ++.- -+.+++||--
T Consensus 271 P~-~~~p---L~~~--------~nvilTPHia 290 (333)
T PRK13243 271 PY-YNEE---LFSL--------KNVVLAPHIG 290 (333)
T ss_pred CC-CCch---hhcC--------CCEEECCcCC
Confidence 74 3222 3331 3677888873
No 79
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=98.96 E-value=1.2e-09 Score=102.12 Aligned_cols=107 Identities=22% Similarity=0.273 Sum_probs=78.7
Q ss_pred eecCcc--cccccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCC
Q 012479 94 VRGGRD--LFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (462)
Q Consensus 94 ~~~~~~--~f~~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~ 171 (462)
++.|+| ........+.| ++|||||+|.+|..+|+.|+.. |.+|++.++.... ...+...++. ..+
T Consensus 18 ~~~~~W~~~~~~~~~~l~g-~tvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~~~-~~~~~~~~~~-----~~~ 84 (178)
T PF02826_consen 18 QRNGEWASRERFPGRELRG-KTVGIIGYGRIGRAVARRLKAF------GMRVIGYDRSPKP-EEGADEFGVE-----YVS 84 (178)
T ss_dssp HHTTBHHHHTTTTBS-STT-SEEEEESTSHHHHHHHHHHHHT------T-EEEEEESSCHH-HHHHHHTTEE-----ESS
T ss_pred HHcCCCCCCcCCCccccCC-CEEEEEEEcCCcCeEeeeeecC------CceeEEecccCCh-hhhcccccce-----eee
Confidence 367788 33333589999 9999999999999999999987 9998777665432 3335566775 569
Q ss_pred HhhhhccCCeEEEeecchhH-HHHHH-HHHhcCCCCcEEEEe-cc
Q 012479 172 IYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLS-HG 213 (462)
Q Consensus 172 ~~eav~~ADvViLavpd~a~-~~vl~-eI~~~Lk~gaiL~~a-~G 213 (462)
.+|++++||+|++++|-... ..++. +.+..||+|++++-+ -|
T Consensus 85 l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG 129 (178)
T PF02826_consen 85 LDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARG 129 (178)
T ss_dssp HHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSG
T ss_pred hhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccch
Confidence 99999999999999995544 35665 678899999987744 45
No 80
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=98.96 E-value=4.9e-09 Score=107.44 Aligned_cols=154 Identities=21% Similarity=0.230 Sum_probs=106.9
Q ss_pred eecCccccccc-ccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCH
Q 012479 94 VRGGRDLFNLL-PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172 (462)
Q Consensus 94 ~~~~~~~f~~~-~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~ 172 (462)
.|+|.|..... ...|.| ||+||||+|.+|..+|..++.. |++|+++++..++ +.+...+... ..+.
T Consensus 125 ~~~g~W~~~~~~g~el~g-kTvGIiG~G~IG~~va~~l~af------gm~v~~~d~~~~~--~~~~~~~~~~----~~~L 191 (324)
T COG0111 125 QRRGEWDRKAFRGTELAG-KTVGIIGLGRIGRAVAKRLKAF------GMKVIGYDPYSPR--ERAGVDGVVG----VDSL 191 (324)
T ss_pred HHcCCccccccccccccC-CEEEEECCCHHHHHHHHHHHhC------CCeEEEECCCCch--hhhcccccee----cccH
Confidence 38899987222 358899 9999999999999999999988 9998776653333 2344455553 5689
Q ss_pred hhhhccCCeEEEeecchh-HHHHHH-HHHhcCCCCcEEEEec-cc------hHHHhhhccccCCCCccEEecccCCCchh
Q 012479 173 YETISGSDLVLLLISDAA-QADNYE-KIFSCMKPNSILGLSH-GF------LLGHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (462)
Q Consensus 173 ~eav~~ADvViLavpd~a-~~~vl~-eI~~~Lk~gaiL~~a~-G~------~i~~~~~~~i~~p~~v~VV~v~Pngpg~~ 243 (462)
++++++||+|++++|-.. ...++. +.+..||+|++++-++ |- .+..+++..+. ...+||.-..|-.+.+.
T Consensus 192 d~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~-gA~lDVf~~EPl~~~~p 270 (324)
T COG0111 192 DELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIA-GAALDVFEEEPLPADSP 270 (324)
T ss_pred HHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcc-eEEecCCCCCCCCCCCh
Confidence 999999999999999544 455776 6788899999877554 42 12333332222 34678888888766644
Q ss_pred hHHhhhcCccccCCCceEEEeeccC-CCHH
Q 012479 244 VRRLYVQGKEINGAGINSSFAVHQD-VDGR 272 (462)
Q Consensus 244 vr~lf~~G~~~~G~Gv~aliav~qd-~tge 272 (462)
+|.- -+.+++||-- .|.+
T Consensus 271 ---L~~~--------pnV~~TPHia~~T~e 289 (324)
T COG0111 271 ---LWDL--------PNVILTPHIGGSTDE 289 (324)
T ss_pred ---hhcC--------CCeEECCcccccCHH
Confidence 4442 3566688773 3444
No 81
>PLN02858 fructose-bisphosphate aldolase
Probab=98.96 E-value=2.2e-08 Score=119.07 Aligned_cols=197 Identities=13% Similarity=0.065 Sum_probs=122.2
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchhH
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a~ 191 (462)
++|||||+|+||..||.||.+. |++|.+++|..++ .+...+.|... +.++.|++++||+||+++|+..+
T Consensus 5 ~~IGfIGLG~MG~~mA~~L~~~------G~~v~v~dr~~~~-~~~l~~~Ga~~----~~s~~e~a~~advVi~~l~~~~~ 73 (1378)
T PLN02858 5 GVVGFVGLDSLSFELASSLLRS------GFKVQAFEISTPL-MEKFCELGGHR----CDSPAEAAKDAAALVVVLSHPDQ 73 (1378)
T ss_pred CeEEEEchhHHHHHHHHHHHHC------CCeEEEEcCCHHH-HHHHHHcCCee----cCCHHHHHhcCCEEEEEcCChHH
Confidence 7899999999999999999999 9999888776444 45555678765 67899999999999999998776
Q ss_pred H-HHH---HHHHhcCCCCcEEEEeccchHH---HhhhccccCCCC--ccEEecccCCCchhhHHhhhcCccccCCCceEE
Q 012479 192 A-DNY---EKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKN--IGVIAVCPKGMGPSVRRLYVQGKEINGAGINSS 262 (462)
Q Consensus 192 ~-~vl---~eI~~~Lk~gaiL~~a~G~~i~---~~~~~~i~~p~~--v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~al 262 (462)
. +++ +.+.+.+++|+++++++-+... .+.+ ..-..+ +.+|- +|-.-+.. .-+ .|--.+
T Consensus 74 v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~--~l~~~g~~~~~lD-aPVsGg~~---~A~-------~G~L~i 140 (1378)
T PLN02858 74 VDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEK--KLTERKEQIFLVD-AYVSKGMS---DLL-------NGKLMI 140 (1378)
T ss_pred HHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHH--HHHhcCCceEEEE-ccCcCCHH---HHh-------cCCeEE
Confidence 4 576 3588889999999988755422 2221 011233 55543 44321111 111 244443
Q ss_pred EeeccCCCHHHHHHHHHHHHHhCCCccccc-chhhhccccchhhhHhHHhHHHHHHHHHHHHHHHcCCCHHHHHHH
Q 012479 263 FAVHQDVDGRATNVALGWSVALGSPFTFAT-TLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKN 337 (462)
Q Consensus 263 iav~qd~tgea~e~a~al~~aiG~~~viet-tf~~E~~~dlfgeqtvL~G~~paliea~~d~~v~~G~~~e~A~~~ 337 (462)
++ .. +.+..+.++.+++.+|...+... ..-.=....+.. +.++.+.+.++.|++ -.+.+.|++++..+..
T Consensus 141 mv-GG--~~~~~~~~~p~l~~~g~~i~~~~G~~G~g~~~KL~n-N~l~~~~~~a~aEAl-~la~~~Gld~~~l~~v 211 (1378)
T PLN02858 141 IA-SG--RSDAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVN-ELLEGIHLVASAEAM-ALGVRAGIHPWIIYDI 211 (1378)
T ss_pred EE-cC--CHHHHHHHHHHHHHhcCceEEecCCCCHhHHHHHHH-HHHHHHHHHHHHHHH-HHHHHcCCCHHHHHHH
Confidence 33 33 56789999999999996411100 000000011110 011111222344443 2357899999988774
No 82
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=98.95 E-value=2.9e-09 Score=97.63 Aligned_cols=95 Identities=23% Similarity=0.348 Sum_probs=69.7
Q ss_pred EEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec--------C--CCcCCHhhhhccCCeE
Q 012479 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--------N--GTLGDIYETISGSDLV 182 (462)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~--------d--~~~~~~~eav~~ADvV 182 (462)
||+|||.|++|.++|.-|.+. |++|.++.|+.. ..+.-.+.+.... + ..+.|+++++++||+|
T Consensus 1 KI~ViGaG~~G~AlA~~la~~------g~~V~l~~~~~~-~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~I 73 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADN------GHEVTLWGRDEE-QIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADII 73 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHC------TEEEEEETSCHH-HHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEE
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCEEEEEeccHH-HHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEE
Confidence 799999999999999999999 999988877643 3333333222100 0 0146788999999999
Q ss_pred EEeecchhHHHHHHHHHhcCCCCcEEE-Eeccc
Q 012479 183 LLLISDAAQADNYEKIFSCMKPNSILG-LSHGF 214 (462)
Q Consensus 183 iLavpd~a~~~vl~eI~~~Lk~gaiL~-~a~G~ 214 (462)
++++|.+.+.+++++|.|+++++++|. .+.||
T Consensus 74 iiavPs~~~~~~~~~l~~~l~~~~~ii~~~KG~ 106 (157)
T PF01210_consen 74 IIAVPSQAHREVLEQLAPYLKKGQIIISATKGF 106 (157)
T ss_dssp EE-S-GGGHHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred EecccHHHHHHHHHHHhhccCCCCEEEEecCCc
Confidence 999999999999999999999998754 55677
No 83
>PRK07574 formate dehydrogenase; Provisional
Probab=98.92 E-value=4.9e-09 Score=109.71 Aligned_cols=159 Identities=18% Similarity=0.106 Sum_probs=106.2
Q ss_pred eecCcccccc---cccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcC
Q 012479 94 VRGGRDLFNL---LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170 (462)
Q Consensus 94 ~~~~~~~f~~---~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~ 170 (462)
++.|+|.... ....|.| ++|||||+|+||..+|+.|+.. |.+|++.++... ..+.....|+.. ..
T Consensus 173 ~~~g~W~~~~~~~~~~~L~g-ktVGIvG~G~IG~~vA~~l~~f------G~~V~~~dr~~~-~~~~~~~~g~~~----~~ 240 (385)
T PRK07574 173 AVEGGWNIADCVSRSYDLEG-MTVGIVGAGRIGLAVLRRLKPF------DVKLHYTDRHRL-PEEVEQELGLTY----HV 240 (385)
T ss_pred HHhCCCCcccccccceecCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCCC-chhhHhhcCcee----cC
Confidence 4678896532 2367999 9999999999999999999987 999877766532 223334456653 46
Q ss_pred CHhhhhccCCeEEEeecchhH-HHHHH-HHHhcCCCCcEEEEec-cch------HHHhhhccccCCCCccEEecccCCCc
Q 012479 171 DIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMG 241 (462)
Q Consensus 171 ~~~eav~~ADvViLavpd~a~-~~vl~-eI~~~Lk~gaiL~~a~-G~~------i~~~~~~~i~~p~~v~VV~v~Pngpg 241 (462)
+.+|++++||+|++++|.... ..++. +.+..||+|++|+.++ |-. +..+++..+ .....||....|--+.
T Consensus 241 ~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i-~GAaLDV~~~EPlp~d 319 (385)
T PRK07574 241 SFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHL-AGYAGDVWFPQPAPAD 319 (385)
T ss_pred CHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCc-cEEEEecCCCCCCCCC
Confidence 899999999999999997665 45776 6889999999887554 421 122232111 1234677777775434
Q ss_pred hhhHHhhhcCccccCCCceEEEeecc-CCCHHHHHH
Q 012479 242 PSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNV 276 (462)
Q Consensus 242 ~~vr~lf~~G~~~~G~Gv~aliav~q-d~tgea~e~ 276 (462)
+. ++.- -+.+++||- ..+.+..+.
T Consensus 320 ~p---L~~~--------pNvilTPHiag~T~e~~~~ 344 (385)
T PRK07574 320 HP---WRTM--------PRNGMTPHISGTTLSAQAR 344 (385)
T ss_pred Ch---HHhC--------CCeEECCccccCcHHHHHH
Confidence 33 2221 366788875 345555443
No 84
>PRK06436 glycerate dehydrogenase; Provisional
Probab=98.92 E-value=6.6e-09 Score=105.51 Aligned_cols=150 Identities=15% Similarity=0.116 Sum_probs=99.7
Q ss_pred eecCcccccccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHh
Q 012479 94 VRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173 (462)
Q Consensus 94 ~~~~~~~f~~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~ 173 (462)
+|+|+|..... ..|.| ++|||||+|+||.++|+.|+.. |++|+++++...+ .|+.. ...+.+
T Consensus 107 ~~~g~w~~~~~-~~L~g-ktvgIiG~G~IG~~vA~~l~af------G~~V~~~~r~~~~-------~~~~~---~~~~l~ 168 (303)
T PRK06436 107 MKNGNFKQSPT-KLLYN-KSLGILGYGGIGRRVALLAKAF------GMNIYAYTRSYVN-------DGISS---IYMEPE 168 (303)
T ss_pred HHcCCCCCCCC-CCCCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCCCcc-------cCccc---ccCCHH
Confidence 46788976543 68999 9999999999999999988877 8898776654221 23321 035789
Q ss_pred hhhccCCeEEEeecchhHH-HHHH-HHHhcCCCCcEEEEec-cch------HHHhhhccccCCCCccEEecccCCCchhh
Q 012479 174 ETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSV 244 (462)
Q Consensus 174 eav~~ADvViLavpd~a~~-~vl~-eI~~~Lk~gaiL~~a~-G~~------i~~~~~~~i~~p~~v~VV~v~Pngpg~~v 244 (462)
+++++||+|++++|..... .++. +....||+|++++.++ |-. +..+++ +.......||..-.|..+.+.
T Consensus 169 ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~-g~i~~a~lDV~~~EP~~~~~~- 246 (303)
T PRK06436 169 DIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRN-HNDKYYLSDVWWNEPIITETN- 246 (303)
T ss_pred HHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHc-CCceEEEEccCCCCCCCccCC-
Confidence 9999999999999977664 4665 6888899999887554 421 112222 111112356766666433221
Q ss_pred HHhhhcCccccCCCceEEEeecc--CCCHHHHHH
Q 012479 245 RRLYVQGKEINGAGINSSFAVHQ--DVDGRATNV 276 (462)
Q Consensus 245 r~lf~~G~~~~G~Gv~aliav~q--d~tgea~e~ 276 (462)
=-+++++||- ..+.+..+.
T Consensus 247 -------------~~nviiTPHi~g~~t~e~~~~ 267 (303)
T PRK06436 247 -------------PDNVILSPHVAGGMSGEIMQP 267 (303)
T ss_pred -------------CCCEEECCccccccCHHHHHH
Confidence 1367899993 356655444
No 85
>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]
Probab=98.92 E-value=1.9e-07 Score=92.39 Aligned_cols=227 Identities=14% Similarity=0.185 Sum_probs=156.7
Q ss_pred CCEEEEEcccch--------------------HHHHHHHHHHhhhhhcCCcEEEEEecC----CchhHHHHHHcCceecC
Q 012479 111 INQIGVIGWGSQ--------------------GPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEARAAGFTEEN 166 (462)
Q Consensus 111 ikkIgIIG~G~m--------------------G~AiA~~Lrds~~~~g~G~~Vivg~r~----~~~s~~~A~~~G~~~~d 166 (462)
++||+|.|.||| |..+|-.+... |++|+....+ +...|++-+..|+..
T Consensus 1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeA------GHDVVLaePn~d~~dd~~w~~vedAGV~v-- 72 (340)
T COG4007 1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEA------GHDVVLAEPNRDIMDDEHWKRVEDAGVEV-- 72 (340)
T ss_pred CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHc------CCcEEeecCCccccCHHHHHHHHhcCcEE--
Confidence 378999999987 55666666666 8888887543 346699999999987
Q ss_pred CCcCCHhhhhccCCeEEEeecch-hHHHHHHHHHhcCCCCcEEEEec---cchHHHhhhccccC-CCCccEEecccC-CC
Q 012479 167 GTLGDIYETISGSDLVLLLISDA-AQADNYEKIFSCMKPNSILGLSH---GFLLGHLQSMGLDF-PKNIGVIAVCPK-GM 240 (462)
Q Consensus 167 ~~~~~~~eav~~ADvViLavpd~-a~~~vl~eI~~~Lk~gaiL~~a~---G~~i~~~~~~~i~~-p~~v~VV~v~Pn-gp 240 (462)
+.|..++++.+++.+|-||-. ..-.+.++|.+++..|++|+-.+ -+.+.+--+..+.. ++|+-|-..||- -|
T Consensus 73 --v~dD~eaa~~~Ei~VLFTPFGk~T~~Iarei~~hvpEgAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvP 150 (340)
T COG4007 73 --VSDDAEAAEHGEIHVLFTPFGKATFGIAREILEHVPEGAVICNTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVP 150 (340)
T ss_pred --ecCchhhhhcceEEEEecccchhhHHHHHHHHhhCcCCcEecccccCchhHHHHHhhhhhcCchhhcCccccCCCCCC
Confidence 677889999999999999987 66789999999999999986443 33332221222333 368888888886 46
Q ss_pred chhhHHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHH-HHHH
Q 012479 241 GPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-IVES 319 (462)
Q Consensus 241 g~~vr~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~pa-liea 319 (462)
|....+.|.-+ |++-.. -.-+|+++.+++..++++.|.. ++.+ ..|+-...+-++-.+.+ .+++
T Consensus 151 Gtp~h~~yvia----gr~t~g----~elATeEQi~r~velaes~Gk~-~yv~------padv~s~VaDmg~lvtav~l~g 215 (340)
T COG4007 151 GTPQHGHYVIA----GRSTEG----KELATEEQIERCVELAESTGKE-VYVL------PADVVSAVADMGVLVTAVALSG 215 (340)
T ss_pred CCCCCceEEEe----ccCCCc----eeeccHHHHHHHHHHHHhcCCc-eEec------CHHHHHHhhhhHHHHHHHHHHH
Confidence 66666666654 222221 2246889999999999999964 2211 22333333323222222 3333
Q ss_pred HHHH---HH-HcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcC
Q 012479 320 LFRR---FT-ENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFS 363 (462)
Q Consensus 320 ~~d~---~v-~~G~~~e~A~~~~~e~i~Gli~~li~e~G~~~m~~~vs 363 (462)
..|. +. -.|-|.|+--+.+..++. -++-++-.+|+..|...+.
T Consensus 216 vldyy~Vg~qIi~AP~eMIekQilmtLq-TmAsLvetsGi~g~~~~~n 262 (340)
T COG4007 216 VLDYYYVGTQIIGAPKEMIEKQILMTLQ-TMASLVETSGIDGMLKALN 262 (340)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHH-HHHHHHHhcchhHHHHhcC
Confidence 3333 33 469999999887777776 4799999999999988766
No 86
>PLN03139 formate dehydrogenase; Provisional
Probab=98.91 E-value=5.4e-09 Score=109.44 Aligned_cols=158 Identities=15% Similarity=0.047 Sum_probs=105.7
Q ss_pred eecCccccc---ccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcC
Q 012479 94 VRGGRDLFN---LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG 170 (462)
Q Consensus 94 ~~~~~~~f~---~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~ 170 (462)
++.|+|... .....|.| ++|||||+|+||..+|+.|+.. |.+|+++++.. ...+...+.|+.. ..
T Consensus 180 ~~~g~W~~~~~~~~~~~L~g-ktVGIVG~G~IG~~vA~~L~af------G~~V~~~d~~~-~~~~~~~~~g~~~----~~ 247 (386)
T PLN03139 180 VVSGEWNVAGIAYRAYDLEG-KTVGTVGAGRIGRLLLQRLKPF------NCNLLYHDRLK-MDPELEKETGAKF----EE 247 (386)
T ss_pred HHhCCCccccccCCCcCCCC-CEEEEEeecHHHHHHHHHHHHC------CCEEEEECCCC-cchhhHhhcCcee----cC
Confidence 567889642 22367999 9999999999999999999987 99987765542 2233344556653 45
Q ss_pred CHhhhhccCCeEEEeecchhH-HHHHH-HHHhcCCCCcEEEEec-cch------HHHhhhccccCCCCccEEecccCCCc
Q 012479 171 DIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMG 241 (462)
Q Consensus 171 ~~~eav~~ADvViLavpd~a~-~~vl~-eI~~~Lk~gaiL~~a~-G~~------i~~~~~~~i~~p~~v~VV~v~Pngpg 241 (462)
+.+|++++||+|++++|.... ..++. +++..||+|++|+.++ |-. +..+++.. ......||..-.|..+.
T Consensus 248 ~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~-l~GAaLDV~~~EPlp~d 326 (386)
T PLN03139 248 DLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGH-IGGYGGDVWYPQPAPKD 326 (386)
T ss_pred CHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCC-ceEEEEcCCCCCCCCCC
Confidence 899999999999999996655 45775 6899999999887665 421 12222211 11234677777775544
Q ss_pred hhhHHhhhcCccccCCCceEEEeeccC-CCHHHHH
Q 012479 242 PSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATN 275 (462)
Q Consensus 242 ~~vr~lf~~G~~~~G~Gv~aliav~qd-~tgea~e 275 (462)
+.. +.- -+.+++||-. .+.++.+
T Consensus 327 ~pL---~~~--------pNvilTPHiag~t~~~~~ 350 (386)
T PLN03139 327 HPW---RYM--------PNHAMTPHISGTTIDAQL 350 (386)
T ss_pred Chh---hcC--------CCeEEcccccccCHHHHH
Confidence 432 221 3667788763 3444443
No 87
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=98.89 E-value=2.2e-07 Score=95.95 Aligned_cols=171 Identities=17% Similarity=0.248 Sum_probs=105.3
Q ss_pred EEEEEcccchHHHHHHHHHHhhhhhcCC--------cEEEEEecCC----chhHHHHHH--------cCceecCC--CcC
Q 012479 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSD--------IVVKVGLRKG----SRSFAEARA--------AGFTEENG--TLG 170 (462)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lrds~~~~g~G--------~~Vivg~r~~----~~s~~~A~~--------~G~~~~d~--~~~ 170 (462)
||+|||.|+.|.++|.-|.++ | ++|.++.|.. +...+.-.+ .|+...+. .+.
T Consensus 1 kI~VIGaG~wGtALA~~la~n------g~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~ 74 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAEN------ARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVP 74 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEEC
Confidence 699999999999999999988 7 7888887632 221111111 13211000 135
Q ss_pred CHhhhhccCCeEEEeecchhHHHHHHHHHhcCCCCcE-EEEeccchHH---------HhhhccccCCCCccEEecccCCC
Q 012479 171 DIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSI-LGLSHGFLLG---------HLQSMGLDFPKNIGVIAVCPKGM 240 (462)
Q Consensus 171 ~~~eav~~ADvViLavpd~a~~~vl~eI~~~Lk~gai-L~~a~G~~i~---------~~~~~~i~~p~~v~VV~v~Pngp 240 (462)
|+++++++||+||+++|++.+.++++++.++++++++ |+.+.|+... .+++ .++..+-++ .||
T Consensus 75 dl~eal~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e---~l~~~~~~l----sGP 147 (342)
T TIGR03376 75 DLVEAAKGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEE---ELGIPCGVL----SGA 147 (342)
T ss_pred CHHHHHhcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHH---HhCCCeEEe----eCc
Confidence 7889999999999999999999999999999998874 6788888542 1111 122222222 244
Q ss_pred chhhHHhhhcCccccCCCceEEEeecc-CCC--HHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHH
Q 012479 241 GPSVRRLYVQGKEINGAGINSSFAVHQ-DVD--GRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG 315 (462)
Q Consensus 241 g~~vr~lf~~G~~~~G~Gv~aliav~q-d~t--gea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~pa 315 (462)
.+. .+-. +|.|+-+++.. |.+ .+..+.+.++ +-.. .|.-....|+.|.+ |||.+--
T Consensus 148 ~~A--~Eva-------~~~pt~~~ia~~~~~~~~~~a~~~~~l---f~~~-----~frv~~s~Dv~GvE--l~galKN 206 (342)
T TIGR03376 148 NLA--NEVA-------KEKFSETTVGYRDPADFDVDARVLKAL---FHRP-----YFRVNVVDDVAGVE--IAGALKN 206 (342)
T ss_pred chH--HHHH-------cCCCceEEEEeCCCcchHHHHHHHHHH---hCCC-----CEEEEEcCCcccch--hhHHHHH
Confidence 444 3333 35655444433 222 3444444444 4443 33334456788777 8888874
No 88
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=98.88 E-value=5.5e-08 Score=91.54 Aligned_cols=150 Identities=16% Similarity=0.199 Sum_probs=100.2
Q ss_pred EEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHH-----------HcCceec---------CCCcCCH
Q 012479 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-----------AAGFTEE---------NGTLGDI 172 (462)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~-----------~~G~~~~---------d~~~~~~ 172 (462)
||+|||.|.||.++|..+..+ |++|++.+.+.+ ..+.++ +.|-... -....+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~------G~~V~l~d~~~~-~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl 73 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARA------GYEVTLYDRSPE-ALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDL 73 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHT------TSEEEEE-SSHH-HHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSG
T ss_pred CEEEEcCCHHHHHHHHHHHhC------CCcEEEEECChH-HHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCH
Confidence 799999999999999999999 999988776533 222211 1121000 0014678
Q ss_pred hhhhccCCeEEEeecchhH--HHHHHHHHhcCCCCcEE-EEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhh
Q 012479 173 YETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYV 249 (462)
Q Consensus 173 ~eav~~ADvViLavpd~a~--~~vl~eI~~~Lk~gaiL-~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~ 249 (462)
++++ +||+||=++|.... .++|.++.+.+.++++| +-++++.+..+.. .++..-+++.+|+-.|.+..+
T Consensus 74 ~~~~-~adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~---~~~~p~R~ig~Hf~~P~~~~~---- 145 (180)
T PF02737_consen 74 EEAV-DADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSLSISELAA---ALSRPERFIGMHFFNPPHLMP---- 145 (180)
T ss_dssp GGGC-TESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHT---TSSTGGGEEEEEE-SSTTT------
T ss_pred HHHh-hhheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHh---ccCcCceEEEEecccccccCc----
Confidence 8887 99999999997665 36999999999999987 5777888877765 333445799999988876521
Q ss_pred cCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 250 QGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 250 ~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~ 287 (462)
.-= +.++...+.+.++.+.+++..+|..
T Consensus 146 ---------lVE-vv~~~~T~~~~~~~~~~~~~~~gk~ 173 (180)
T PF02737_consen 146 ---------LVE-VVPGPKTSPETVDRVRALLRSLGKT 173 (180)
T ss_dssp ---------EEE-EEE-TTS-HHHHHHHHHHHHHTT-E
T ss_pred ---------eEE-EeCCCCCCHHHHHHHHHHHHHCCCE
Confidence 222 5568889999999999999999853
No 89
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=98.88 E-value=1.3e-07 Score=94.10 Aligned_cols=154 Identities=18% Similarity=0.195 Sum_probs=98.3
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCC---------CcCCHhhhhccCCeE
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG---------TLGDIYETISGSDLV 182 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~---------~~~~~~eav~~ADvV 182 (462)
|||+|||.|+||..+|..|.++ |++|.+..| . +..+...+.|+...+. ...+.+++++.+|+|
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~------g~~V~~~~r-~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v 72 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEA------GRDVTFLVR-P-KRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLV 72 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHC------CCceEEEec-H-HHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEE
Confidence 5899999999999999999998 888887777 3 3344555566542110 123455667899999
Q ss_pred EEeecchhHHHHHHHHHhcCCCCcEE-EEeccch-HHHhhhccccCCCCccEE------ecccCCCchhhHHhhhcCccc
Q 012479 183 LLLISDAAQADNYEKIFSCMKPNSIL-GLSHGFL-LGHLQSMGLDFPKNIGVI------AVCPKGMGPSVRRLYVQGKEI 254 (462)
Q Consensus 183 iLavpd~a~~~vl~eI~~~Lk~gaiL-~~a~G~~-i~~~~~~~i~~p~~v~VV------~v~Pngpg~~vr~lf~~G~~~ 254 (462)
|+++|..+..++++++.+++.++++| +...|+. ...+.. .+|++ .++ ......|+.....
T Consensus 73 ilavk~~~~~~~~~~l~~~~~~~~~ii~~~nG~~~~~~l~~---~~~~~-~v~~g~~~~~~~~~~~g~v~~~-------- 140 (305)
T PRK12921 73 ILAVKAYQLDAAIPDLKPLVGEDTVIIPLQNGIGQLEQLEP---YFGRE-RVLGGVVFISAQLNGDGVVVQR-------- 140 (305)
T ss_pred EEEecccCHHHHHHHHHhhcCCCCEEEEeeCCCChHHHHHH---hCCcc-cEEEEEEEEEEEECCCeEEEEc--------
Confidence 99999999999999999999888765 4667875 233332 33433 222 2333355555211
Q ss_pred cCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 255 NGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 255 ~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~ 287 (462)
+.|... +........+..+...+++...|..
T Consensus 141 -~~~~~~-iG~~~~~~~~~~~~l~~~l~~~g~~ 171 (305)
T PRK12921 141 -ADHRLT-FGEIPGQRSERTRAVRDALAGARLE 171 (305)
T ss_pred -CCCcEE-EcCCCCCcCHHHHHHHHHHHhCCCC
Confidence 122222 3332333345555666777777754
No 90
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=98.88 E-value=2e-08 Score=102.92 Aligned_cols=162 Identities=23% Similarity=0.231 Sum_probs=109.4
Q ss_pred cceeecCccccc-----ccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec
Q 012479 91 EYIVRGGRDLFN-----LLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (462)
Q Consensus 91 e~~~~~~~~~f~-----~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~ 165 (462)
+.-+|.|.|... .....++| ||+||||+|.||.++|+.++.. |.+|+++.+... .+..++.++.
T Consensus 122 ~~~~r~g~w~~~~~~~~~~~~~l~g-ktvGIiG~GrIG~avA~r~~~F------gm~v~y~~~~~~--~~~~~~~~~~-- 190 (324)
T COG1052 122 DRRVREGNWSLSGGPDPLLGFDLRG-KTLGIIGLGRIGQAVARRLKGF------GMKVLYYDRSPN--PEAEKELGAR-- 190 (324)
T ss_pred HHHHhcCcccccCCcccccccCCCC-CEEEEECCCHHHHHHHHHHhcC------CCEEEEECCCCC--hHHHhhcCce--
Confidence 345677888665 44578999 9999999999999999999865 888877766533 3333344455
Q ss_pred CCCcCCHhhhhccCCeEEEeecchhHH-HHHH-HHHhcCCCCcEEEEec-cc------hHHHhhhccccCCCCccEEecc
Q 012479 166 NGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILGLSH-GF------LLGHLQSMGLDFPKNIGVIAVC 236 (462)
Q Consensus 166 d~~~~~~~eav~~ADvViLavpd~a~~-~vl~-eI~~~Lk~gaiL~~a~-G~------~i~~~~~~~i~~p~~v~VV~v~ 236 (462)
..+.+|++++||+|++.+|..... .++. +....||+|.+|+=++ |- .+.-+++.. .-....||.--.
T Consensus 191 ---y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~-i~gaglDV~e~E 266 (324)
T COG1052 191 ---YVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGK-IAGAGLDVFENE 266 (324)
T ss_pred ---eccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCC-cceEEeeecCCC
Confidence 345999999999999999977664 5665 6888999999887444 42 123333322 223467888888
Q ss_pred cCCCchhhHHhhhcCccccCCCceEEEeecc-CCCHHHHH
Q 012479 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATN 275 (462)
Q Consensus 237 Pngpg~~vr~lf~~G~~~~G~Gv~aliav~q-d~tgea~e 275 (462)
|.-..+...++-. . -+.+++||. ..|.++++
T Consensus 267 p~~~d~~l~~l~~-------~-~~vvltPHia~at~ea~~ 298 (324)
T COG1052 267 PALFDHPLLRLDN-------F-PNVVLTPHIASATEEARK 298 (324)
T ss_pred CCCCChhHhhccC-------C-CCEEEccccccccHHHHH
Confidence 8654343322211 1 347788887 44544443
No 91
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=98.87 E-value=2.1e-08 Score=102.68 Aligned_cols=158 Identities=16% Similarity=0.182 Sum_probs=102.7
Q ss_pred ceeecCcccccc----cccccCCCCEEEEEcccchHHHHHHHHH-HhhhhhcCCcEEEEEecCCchhHHHHHHcCceecC
Q 012479 92 YIVRGGRDLFNL----LPDAFNGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN 166 (462)
Q Consensus 92 ~~~~~~~~~f~~----~~~~l~gikkIgIIG~G~mG~AiA~~Lr-ds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d 166 (462)
..+|+|+|.... ....|.| ++|||||+|++|..+|+.++ .. |.+|++.++... .+.....|..
T Consensus 123 ~~~~~g~w~~~~~~~~~g~~L~g-ktvGIiG~G~IG~~va~~l~~~f------gm~V~~~~~~~~--~~~~~~~~~~--- 190 (323)
T PRK15409 123 ERVKAGEWTASIGPDWFGTDVHH-KTLGIVGMGRIGMALAQRAHFGF------NMPILYNARRHH--KEAEERFNAR--- 190 (323)
T ss_pred HHHHcCCCcccCccccccCCCCC-CEEEEEcccHHHHHHHHHHHhcC------CCEEEEECCCCc--hhhHHhcCcE---
Confidence 345778886421 2357999 99999999999999999997 44 888876554422 2223345655
Q ss_pred CCcCCHhhhhccCCeEEEeecchhH-HHHHH-HHHhcCCCCcEEEEec-cch------HHHhhhccccCCCCccEEeccc
Q 012479 167 GTLGDIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCP 237 (462)
Q Consensus 167 ~~~~~~~eav~~ADvViLavpd~a~-~~vl~-eI~~~Lk~gaiL~~a~-G~~------i~~~~~~~i~~p~~v~VV~v~P 237 (462)
..+.+|++++||+|++++|-... ..++. +.+..||+|++++-++ |-. +..+++.. ......||..-.|
T Consensus 191 --~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~-i~gAaLDVf~~EP 267 (323)
T PRK15409 191 --YCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGE-IHAAGLDVFEQEP 267 (323)
T ss_pred --ecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCC-eeEEEeecCCCCC
Confidence 45899999999999999996555 45665 6888999999877443 421 22333211 1123467777777
Q ss_pred CCCchhhHHhhhcCccccCCCceEEEeecc-CCCHHHHH
Q 012479 238 KGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATN 275 (462)
Q Consensus 238 ngpg~~vr~lf~~G~~~~G~Gv~aliav~q-d~tgea~e 275 (462)
-.+.+. ++. =-+++++||- ..+.++.+
T Consensus 268 ~~~~~p---L~~--------~~nvilTPHia~~t~e~~~ 295 (323)
T PRK15409 268 LSVDSP---LLS--------LPNVVAVPHIGSATHETRY 295 (323)
T ss_pred CCCCch---hhc--------CCCEEEcCcCCCCcHHHHH
Confidence 433332 232 2477888886 33444443
No 92
>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=98.86 E-value=1.7e-08 Score=112.50 Aligned_cols=135 Identities=13% Similarity=-0.029 Sum_probs=98.2
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEEEeccchHHHhhhccccCCCC-ccEEecccCCCchhhHHhhhcCccccCCCce
Q 012479 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKN-IGVIAVCPKGMGPSVRRLYVQGKEINGAGIN 260 (462)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~-v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~ 260 (462)
||||+|+....++++++.|+++++++|+|+++++-...+.....++.+ .+||..||+. |.. ...|+...+++++|.+
T Consensus 1 vila~Pv~~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMa-G~e-~~G~~~a~~~Lf~~~~ 78 (673)
T PRK11861 1 VLLAAPVAQTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIA-GRE-SSGVDAALADLYVGRN 78 (673)
T ss_pred CEEEcCHHHHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcC-cCc-chhhhhhChhHhCCCe
Confidence 699999999999999999999999999999999743222111133432 5799999972 322 1233334444455899
Q ss_pred EEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHHHHHHHHHHH
Q 012479 261 SSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRF 324 (462)
Q Consensus 261 aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~paliea~~d~~ 324 (462)
+++|+.++.+.++++.+++++..+|+ +++.++.++|++.-.+ +|+.=|-+.-++.+.+
T Consensus 79 ~il~p~~~~~~~~~~~~~~l~~~~Ga-~~~~~~~~~HD~~~A~-----iShlpH~~a~~l~~~~ 136 (673)
T PRK11861 79 VVLCALPENAPDALARVEAMWRAARA-DVRAMSAEQHDRVFAA-----VSHLPHVLSFALVEQI 136 (673)
T ss_pred EEEecCCCCCHHHHHHHHHHHHHcCC-EEEECCHHHHHHHHHH-----HhhHHHHHHHHHHHHH
Confidence 99999999999999999999999995 7899999999866433 3444444444444444
No 93
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=98.86 E-value=1.2e-08 Score=104.64 Aligned_cols=94 Identities=17% Similarity=0.239 Sum_probs=71.7
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
...|+| ++|||||+|+||.++|+.|+.. |.+|+++++....... .... ..+.++++++||+|++
T Consensus 141 ~~~l~g-~~VgIIG~G~IG~~vA~~L~~~------G~~V~~~d~~~~~~~~-----~~~~----~~~l~ell~~aDiVil 204 (330)
T PRK12480 141 SKPVKN-MTVAIIGTGRIGAATAKIYAGF------GATITAYDAYPNKDLD-----FLTY----KDSVKEAIKDADIISL 204 (330)
T ss_pred ccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEeCChhHhhh-----hhhc----cCCHHHHHhcCCEEEE
Confidence 467999 9999999999999999999988 9998776654322111 1111 3578999999999999
Q ss_pred eecchhH-HHHHH-HHHhcCCCCcEEEEe-ccc
Q 012479 185 LISDAAQ-ADNYE-KIFSCMKPNSILGLS-HGF 214 (462)
Q Consensus 185 avpd~a~-~~vl~-eI~~~Lk~gaiL~~a-~G~ 214 (462)
++|.... ..++. ++.+.||+|++|+.+ -|-
T Consensus 205 ~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~ 237 (330)
T PRK12480 205 HVPANKESYHLFDKAMFDHVKKGAILVNAARGA 237 (330)
T ss_pred eCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCcc
Confidence 9997764 34454 788999999987644 454
No 94
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.85 E-value=2.6e-07 Score=94.69 Aligned_cols=201 Identities=19% Similarity=0.263 Sum_probs=126.4
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc--------CceecC--CCcCCHhhhhccCC
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--------GFTEEN--GTLGDIYETISGSD 180 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~--------G~~~~d--~~~~~~~eav~~AD 180 (462)
++||+|||.|+-|.|+|+-|.++ |++|.+|.|+.+- .+.-... |+...+ ..+.|+++++++||
T Consensus 1 ~~kI~ViGaGswGTALA~~la~n------g~~V~lw~r~~~~-~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad 73 (329)
T COG0240 1 MMKIAVIGAGSWGTALAKVLARN------GHEVRLWGRDEEI-VAEINETRENPKYLPGILLPPNLKATTDLAEALDGAD 73 (329)
T ss_pred CceEEEEcCChHHHHHHHHHHhc------CCeeEEEecCHHH-HHHHHhcCcCccccCCccCCcccccccCHHHHHhcCC
Confidence 37999999999999999999999 9999888775321 1111111 221101 12568899999999
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEE-EEeccch------HH-HhhhccccCCCCccEEecccCCCchhhHHhhhcCc
Q 012479 181 LVLLLISDAAQADNYEKIFSCMKPNSIL-GLSHGFL------LG-HLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (462)
Q Consensus 181 vViLavpd~a~~~vl~eI~~~Lk~gaiL-~~a~G~~------i~-~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~ 252 (462)
+|++++|-+.+.++++++.+++++++++ +.+-|+. +. .+++ .+|.+.-++.. ||.+. ++-
T Consensus 74 ~iv~avPs~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e---~l~~~~~~vLS---GPs~A--~EV---- 141 (329)
T COG0240 74 IIVIAVPSQALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEE---ELPDNPIAVLS---GPSFA--KEV---- 141 (329)
T ss_pred EEEEECChHHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHH---HcCCCeEEEEE---CccHH--HHH----
Confidence 9999999999999999999999998864 5666772 22 2333 34443333333 44444 222
Q ss_pred cccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHH--HHHHHHHHHHHcCCC
Q 012479 253 EINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG--IVESLFRRFTENGMN 330 (462)
Q Consensus 253 ~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~pa--liea~~d~~v~~G~~ 330 (462)
.+|.|+-+++... +.+..+.+..+|.. . +|.--+..|..|.+ ++|.+-- -|-+++--+...|-.
T Consensus 142 ---a~g~pta~~vas~-d~~~a~~v~~~f~~---~-----~Frvy~~~Dv~Gve--igGAlKNViAIA~Gi~dGlg~G~N 207 (329)
T COG0240 142 ---AQGLPTAVVVASN-DQEAAEKVQALFSS---P-----YFRVYTSTDVIGVE--IGGALKNVIAIAAGIADGLGLGDN 207 (329)
T ss_pred ---hcCCCcEEEEecC-CHHHHHHHHHHhCC---C-----cEEEEecCchhhhH--HHHHHHHHHHHHHHHHHHhhcChh
Confidence 2578887776653 33444444444443 3 23334456777776 7787774 334444445566666
Q ss_pred HHHHHH-HHHHHHHH
Q 012479 331 EDLAYK-NTVECITG 344 (462)
Q Consensus 331 ~e~A~~-~~~e~i~G 344 (462)
-.-|.. -++.+|.-
T Consensus 208 akaalitrGL~Em~r 222 (329)
T COG0240 208 AKAALITRGLAEMTR 222 (329)
T ss_pred HHHHHHHhHHHHHHH
Confidence 655554 45555553
No 95
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=98.84 E-value=2.1e-08 Score=102.09 Aligned_cols=157 Identities=16% Similarity=0.155 Sum_probs=102.7
Q ss_pred eecCccccccc-------ccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecC
Q 012479 94 VRGGRDLFNLL-------PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN 166 (462)
Q Consensus 94 ~~~~~~~f~~~-------~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d 166 (462)
+|+|+|..... ...|.| |+|||||+|++|..+|+.++.. |.+|+++++.... ...++.
T Consensus 122 ~~~g~w~~~~~~~~~~~~~~~L~g-ktvGIiG~G~IG~~vA~~~~~f------gm~V~~~d~~~~~-----~~~~~~--- 186 (311)
T PRK08410 122 VKSGEYSESPIFTHISRPLGEIKG-KKWGIIGLGTIGKRVAKIAQAF------GAKVVYYSTSGKN-----KNEEYE--- 186 (311)
T ss_pred HHcCCCCcCCCccccCccccccCC-CEEEEECCCHHHHHHHHHHhhc------CCEEEEECCCccc-----cccCce---
Confidence 56778864321 257999 9999999999999999999876 8898766553211 123454
Q ss_pred CCcCCHhhhhccCCeEEEeecchhH-HHHHH-HHHhcCCCCcEEE-Eeccch------HHHhhhccccCCCCccEEeccc
Q 012479 167 GTLGDIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILG-LSHGFL------LGHLQSMGLDFPKNIGVIAVCP 237 (462)
Q Consensus 167 ~~~~~~~eav~~ADvViLavpd~a~-~~vl~-eI~~~Lk~gaiL~-~a~G~~------i~~~~~~~i~~p~~v~VV~v~P 237 (462)
..+.+|++++||+|++++|-... ..++. +.+..||||++|+ .+-|-. +..+++..+. ...||..-.|
T Consensus 187 --~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~--AaLDV~~~EP 262 (311)
T PRK08410 187 --RVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY--AGLDVLEKEP 262 (311)
T ss_pred --eecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE--EEEecCCCCC
Confidence 45899999999999999995544 45776 6888999999877 444531 2333332222 4567777777
Q ss_pred CCCchhhHHhhhcCccccCCCceEEEeecc-CCCHHHHHHH
Q 012479 238 KGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNVA 277 (462)
Q Consensus 238 ngpg~~vr~lf~~G~~~~G~Gv~aliav~q-d~tgea~e~a 277 (462)
-.+.+. ++.-- .=-|.+++||- ..+.+..+.+
T Consensus 263 ~~~~~p---L~~~~-----~~~NvilTPH~a~~t~e~~~~~ 295 (311)
T PRK08410 263 MEKNHP---LLSIK-----NKEKLLITPHIAWASKEARKTL 295 (311)
T ss_pred CCCCCh---hhccC-----CCCCEEECCccccCCHHHHHHH
Confidence 544433 22200 00267888886 3455555443
No 96
>PRK08605 D-lactate dehydrogenase; Validated
Probab=98.84 E-value=1e-08 Score=105.11 Aligned_cols=95 Identities=19% Similarity=0.183 Sum_probs=70.5
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHH-HHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEE
Q 012479 105 PDAFNGINQIGVIGWGSQGPAQAQNL-RDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~AiA~~L-rds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvVi 183 (462)
...|.| ++|||||+|+||.++|+.| +.. |.+|++.++..... ...++.. ..+.++++++||+|+
T Consensus 141 ~~~l~g-~~VgIIG~G~IG~~vA~~L~~~~------g~~V~~~d~~~~~~----~~~~~~~----~~~l~ell~~aDvIv 205 (332)
T PRK08605 141 SRSIKD-LKVAVIGTGRIGLAVAKIFAKGY------GSDVVAYDPFPNAK----AATYVDY----KDTIEEAVEGADIVT 205 (332)
T ss_pred cceeCC-CEEEEECCCHHHHHHHHHHHhcC------CCEEEEECCCccHh----HHhhccc----cCCHHHHHHhCCEEE
Confidence 367999 9999999999999999999 444 77876654432221 1122331 358899999999999
Q ss_pred EeecchhHHHHH--HHHHhcCCCCcEEEEec-cc
Q 012479 184 LLISDAAQADNY--EKIFSCMKPNSILGLSH-GF 214 (462)
Q Consensus 184 Lavpd~a~~~vl--~eI~~~Lk~gaiL~~a~-G~ 214 (462)
+++|.......+ .+..+.||+|++|+.++ |.
T Consensus 206 l~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~ 239 (332)
T PRK08605 206 LHMPATKYNHYLFNADLFKHFKKGAVFVNCARGS 239 (332)
T ss_pred EeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCc
Confidence 999987776544 36788999999887554 43
No 97
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=98.83 E-value=8.8e-08 Score=97.24 Aligned_cols=97 Identities=26% Similarity=0.294 Sum_probs=73.0
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCC------------CcCCHhhhhcc
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG------------TLGDIYETISG 178 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~------------~~~~~~eav~~ 178 (462)
++||+|||.|.||.++|..|.++ |++|++..|. +..+...+.|+...+. ...+..++++.
T Consensus 2 ~mkI~IiG~G~mG~~~A~~L~~~------G~~V~~~~r~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (341)
T PRK08229 2 MARICVLGAGSIGCYLGGRLAAA------GADVTLIGRA--RIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAALAT 73 (341)
T ss_pred CceEEEECCCHHHHHHHHHHHhc------CCcEEEEecH--HHHHHHHhcCceeecCCCcceecccceeEeccChhhccC
Confidence 47899999999999999999999 9998887764 2234445556542110 01222356789
Q ss_pred CCeEEEeecchhHHHHHHHHHhcCCCCcEEE-Eeccch
Q 012479 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILG-LSHGFL 215 (462)
Q Consensus 179 ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~-~a~G~~ 215 (462)
+|+||+++|+....++++++.++++++++|+ ...|+.
T Consensus 74 ~D~vil~vk~~~~~~~~~~l~~~~~~~~iii~~~nG~~ 111 (341)
T PRK08229 74 ADLVLVTVKSAATADAAAALAGHARPGAVVVSFQNGVR 111 (341)
T ss_pred CCEEEEEecCcchHHHHHHHHhhCCCCCEEEEeCCCCC
Confidence 9999999999999999999999999998764 556775
No 98
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=98.82 E-value=1e-08 Score=111.11 Aligned_cols=107 Identities=18% Similarity=0.158 Sum_probs=82.1
Q ss_pred eeecCcccccc-cccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCC
Q 012479 93 IVRGGRDLFNL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD 171 (462)
Q Consensus 93 ~~~~~~~~f~~-~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~ 171 (462)
-+|+|+|.... ....|.| |+|||||+|+||.++|+.|+.. |.+|+++++.. ..+.+.+.|+.. ..+
T Consensus 120 ~~~~g~W~~~~~~g~~l~g-ktvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~--~~~~~~~~g~~~----~~~ 186 (525)
T TIGR01327 120 SLKEGEWDRKAFMGTELYG-KTLGVIGLGRIGSIVAKRAKAF------GMKVLAYDPYI--SPERAEQLGVEL----VDD 186 (525)
T ss_pred HHHcCCccccccCccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCC--ChhHHHhcCCEE----cCC
Confidence 35677886432 2367999 9999999999999999999987 98887665532 234455667653 357
Q ss_pred HhhhhccCCeEEEeecchhH-HHHHH-HHHhcCCCCcEEEEec
Q 012479 172 IYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH 212 (462)
Q Consensus 172 ~~eav~~ADvViLavpd~a~-~~vl~-eI~~~Lk~gaiL~~a~ 212 (462)
.+|++++||+|++++|.... ..++. +.+..||+|++|+.++
T Consensus 187 l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~a 229 (525)
T TIGR01327 187 LDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCA 229 (525)
T ss_pred HHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcC
Confidence 99999999999999997654 45664 6778999999887664
No 99
>PLN02928 oxidoreductase family protein
Probab=98.81 E-value=3.3e-08 Score=102.17 Aligned_cols=161 Identities=22% Similarity=0.183 Sum_probs=102.0
Q ss_pred eecCcccccccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcC--------ceec
Q 012479 94 VRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG--------FTEE 165 (462)
Q Consensus 94 ~~~~~~~f~~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G--------~~~~ 165 (462)
+++|+|..+.. ..|.| ++|||||+|.||..+|+.|+.. |.+|++.++...+... ...+ +...
T Consensus 144 ~~~~~w~~~~~-~~l~g-ktvGIiG~G~IG~~vA~~l~af------G~~V~~~dr~~~~~~~--~~~~~~~~~~~~~~~~ 213 (347)
T PLN02928 144 LKARRLGEPIG-DTLFG-KTVFILGYGAIGIELAKRLRPF------GVKLLATRRSWTSEPE--DGLLIPNGDVDDLVDE 213 (347)
T ss_pred HHcCCcccccc-cCCCC-CEEEEECCCHHHHHHHHHHhhC------CCEEEEECCCCChhhh--hhhccccccccccccc
Confidence 45677865333 67999 9999999999999999999977 9998776654221111 1000 0000
Q ss_pred CCCcCCHhhhhccCCeEEEeecchhH-HHHHH-HHHhcCCCCcEEEEec-cch------HHHhhhccccCCCCccEEecc
Q 012479 166 NGTLGDIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVC 236 (462)
Q Consensus 166 d~~~~~~~eav~~ADvViLavpd~a~-~~vl~-eI~~~Lk~gaiL~~a~-G~~------i~~~~~~~i~~p~~v~VV~v~ 236 (462)
.....+.+|++++||+|++++|.... ..++. +.+..||+|++|+.++ |-. +..++.. .......||....
T Consensus 214 ~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g-~i~gAaLDV~~~E 292 (347)
T PLN02928 214 KGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESG-HLGGLAIDVAWSE 292 (347)
T ss_pred cCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcC-CeeEEEEccCCCC
Confidence 01145889999999999999995544 45665 6888999999887554 431 2222321 1112356788777
Q ss_pred cCCCchhhHHhhhcCccccCCCceEEEeeccC-CCHHHHHH
Q 012479 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQD-VDGRATNV 276 (462)
Q Consensus 237 Pngpg~~vr~lf~~G~~~~G~Gv~aliav~qd-~tgea~e~ 276 (462)
|--+.+. ++.. -+.+++||-. .+.+..+.
T Consensus 293 P~~~~~p---L~~~--------~nviiTPHia~~t~~~~~~ 322 (347)
T PLN02928 293 PFDPDDP---ILKH--------PNVIITPHVAGVTEYSYRS 322 (347)
T ss_pred CCCCCCh---hhcC--------CCEEECCcCCCChHHHHHH
Confidence 7443332 3332 4778888863 45454443
No 100
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=98.81 E-value=1.4e-08 Score=103.40 Aligned_cols=148 Identities=14% Similarity=0.122 Sum_probs=96.3
Q ss_pred eecCcccccccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHh
Q 012479 94 VRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173 (462)
Q Consensus 94 ~~~~~~~f~~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~ 173 (462)
.+.|+|..... ..++| +||||||+|+||..+|+.|+.. |++|+++.+...+ . .++.. -....+.+
T Consensus 121 ~~~~~w~~~~~-~~l~g-~tvgIvG~G~IG~~vA~~l~af------G~~V~~~~~~~~~-~-----~~~~~-~~~~~~l~ 185 (312)
T PRK15469 121 QNSSHWQPLPE-YHRED-FTIGILGAGVLGSKVAQSLQTW------GFPLRCWSRSRKS-W-----PGVQS-FAGREELS 185 (312)
T ss_pred HHhCCcCCCCC-CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCCCC-C-----CCcee-ecccccHH
Confidence 45678864333 57899 9999999999999999999987 9988776654221 1 12221 00135789
Q ss_pred hhhccCCeEEEeecchhH-HHHHH-HHHhcCCCCcEEEEec-cch------HHHhhhccccCCCCccEEecccCCCchhh
Q 012479 174 ETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSV 244 (462)
Q Consensus 174 eav~~ADvViLavpd~a~-~~vl~-eI~~~Lk~gaiL~~a~-G~~------i~~~~~~~i~~p~~v~VV~v~Pngpg~~v 244 (462)
+++++||+|++++|.... ..++. +.+..||+|++|+.++ |-. +..+++..+ .....||..-.|--+.+
T Consensus 186 e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i-~gaalDVf~~EPl~~~~-- 262 (312)
T PRK15469 186 AFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKV-KGAMLDVFSREPLPPES-- 262 (312)
T ss_pred HHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCe-eeEEecCCCCCCCCCCC--
Confidence 999999999999996665 45666 6888999999887665 421 222332111 12235666666632222
Q ss_pred HHhhhcCccccCCCceEEEeeccC
Q 012479 245 RRLYVQGKEINGAGINSSFAVHQD 268 (462)
Q Consensus 245 r~lf~~G~~~~G~Gv~aliav~qd 268 (462)
.++.. -+++++||-.
T Consensus 263 -pl~~~--------~nvi~TPHia 277 (312)
T PRK15469 263 -PLWQH--------PRVAITPHVA 277 (312)
T ss_pred -hhhcC--------CCeEECCcCC
Confidence 23331 4677888863
No 101
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.77 E-value=1.8e-08 Score=109.33 Aligned_cols=105 Identities=17% Similarity=0.148 Sum_probs=81.9
Q ss_pred eecCcccccc-cccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCH
Q 012479 94 VRGGRDLFNL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172 (462)
Q Consensus 94 ~~~~~~~f~~-~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~ 172 (462)
+|+|+|.... ....|.| |+|||||+|+||..+|+.|+.. |.+|+++++.. ..+.+...|+.. .+.
T Consensus 123 ~~~g~W~~~~~~g~~l~g-ktvgIiG~G~IG~~vA~~l~~f------G~~V~~~d~~~--~~~~~~~~g~~~-----~~l 188 (526)
T PRK13581 123 LKAGKWERKKFMGVELYG-KTLGIIGLGRIGSEVAKRAKAF------GMKVIAYDPYI--SPERAAQLGVEL-----VSL 188 (526)
T ss_pred HHcCCCCccCccccccCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCCC--ChhHHHhcCCEE-----EcH
Confidence 4678886432 2357899 9999999999999999999988 99887666542 234455667763 489
Q ss_pred hhhhccCCeEEEeecchhH-HHHHH-HHHhcCCCCcEEEEec
Q 012479 173 YETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH 212 (462)
Q Consensus 173 ~eav~~ADvViLavpd~a~-~~vl~-eI~~~Lk~gaiL~~a~ 212 (462)
+|++++||+|++++|.... ..++. +.+..||+|++|+.++
T Consensus 189 ~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~a 230 (526)
T PRK13581 189 DELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCA 230 (526)
T ss_pred HHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECC
Confidence 9999999999999997655 45774 7889999999887654
No 102
>PRK06932 glycerate dehydrogenase; Provisional
Probab=98.75 E-value=7.7e-08 Score=98.12 Aligned_cols=159 Identities=17% Similarity=0.115 Sum_probs=100.5
Q ss_pred eecCcccccc-------cccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecC
Q 012479 94 VRGGRDLFNL-------LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN 166 (462)
Q Consensus 94 ~~~~~~~f~~-------~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d 166 (462)
+++|+|.... ....|+| ++|||||+|.+|..+|+.++.. |.+|++..+.... .....
T Consensus 124 ~~~~~W~~~~~~~~~~~~~~~l~g-ktvgIiG~G~IG~~va~~l~~f------g~~V~~~~~~~~~------~~~~~--- 187 (314)
T PRK06932 124 QLSDRWATCKQFCYFDYPITDVRG-STLGVFGKGCLGTEVGRLAQAL------GMKVLYAEHKGAS------VCREG--- 187 (314)
T ss_pred HHcCCCCcCccccccCCcccccCC-CEEEEECCCHHHHHHHHHHhcC------CCEEEEECCCccc------ccccc---
Confidence 4567785321 2257999 9999999999999999999876 8888655432111 11111
Q ss_pred CCcCCHhhhhccCCeEEEeecchhH-HHHHH-HHHhcCCCCcEEE-Eeccch------HHHhhhccccCCCCccEEeccc
Q 012479 167 GTLGDIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILG-LSHGFL------LGHLQSMGLDFPKNIGVIAVCP 237 (462)
Q Consensus 167 ~~~~~~~eav~~ADvViLavpd~a~-~~vl~-eI~~~Lk~gaiL~-~a~G~~------i~~~~~~~i~~p~~v~VV~v~P 237 (462)
..+.+|++++||+|++++|-... ..++. +.+..||+|++|+ .+-|-. +..+++. .......||..-.|
T Consensus 188 --~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g-~i~gAaLDV~~~EP 264 (314)
T PRK06932 188 --YTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENG-KIAGAALDVLVKEP 264 (314)
T ss_pred --cCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcC-CccEEEEecCCCCC
Confidence 34789999999999999995544 45775 6888999999877 444532 2233321 12123567887777
Q ss_pred CCCchhhHHhhhcCccccCCCceEEEeecc-CCCHHHHHHHH
Q 012479 238 KGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNVAL 278 (462)
Q Consensus 238 ngpg~~vr~lf~~G~~~~G~Gv~aliav~q-d~tgea~e~a~ 278 (462)
-.+.+...+.+.+ =-|.+++||- ..+.++.+...
T Consensus 265 ~~~~~pl~~~~~~-------~pnvilTPHia~~t~e~~~~~~ 299 (314)
T PRK06932 265 PEKDNPLIQAAKR-------LPNLLITPHIAWASDSAVTTLV 299 (314)
T ss_pred CCCCChhhHhhcC-------CCCEEECCccccCcHHHHHHHH
Confidence 5444332211111 1367788886 34555555443
No 103
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=98.73 E-value=2.7e-08 Score=100.26 Aligned_cols=149 Identities=20% Similarity=0.189 Sum_probs=104.0
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchhH
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a~ 191 (462)
++|||||+|+||.+++.||.+. |+.|+|++|..++ .+..++.|..+ ..++.|++++||+||.++|+..+
T Consensus 36 ~~iGFIGLG~MG~~M~~nLik~------G~kVtV~dr~~~k-~~~f~~~Ga~v----~~sPaeVae~sDvvitmv~~~~~ 104 (327)
T KOG0409|consen 36 TRIGFIGLGNMGSAMVSNLIKA------GYKVTVYDRTKDK-CKEFQEAGARV----ANSPAEVAEDSDVVITMVPNPKD 104 (327)
T ss_pred ceeeEEeeccchHHHHHHHHHc------CCEEEEEeCcHHH-HHHHHHhchhh----hCCHHHHHhhcCEEEEEcCChHh
Confidence 7899999999999999999999 9999999887555 45556678875 67899999999999999998777
Q ss_pred H-HHHH---HHHhcCCCCcEE-EEeccchH---HHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEE
Q 012479 192 A-DNYE---KIFSCMKPNSIL-GLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (462)
Q Consensus 192 ~-~vl~---eI~~~Lk~gaiL-~~a~G~~i---~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~ali 263 (462)
+ ++|. .+...+++|... ++++-+.. ..+.+ .+. ..+..+|- +|-. |.. ..=+ +|.-.++
T Consensus 105 v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~-~i~-~~~~~~vD-APVS-Gg~--~~A~-------~G~Ltim 171 (327)
T KOG0409|consen 105 VKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAK-AIS-NKGGRFVD-APVS-GGV--KGAE-------EGTLTIM 171 (327)
T ss_pred hHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHH-HHH-hCCCeEEe-cccc-CCc--hhhh-------cCeEEEE
Confidence 5 5665 366677788866 57765531 12221 112 23445553 3311 111 1111 4566655
Q ss_pred eeccCCCHHHHHHHHHHHHHhCCC
Q 012479 264 AVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 264 av~qd~tgea~e~a~al~~aiG~~ 287 (462)
+ . -+....+.+..+++.+|..
T Consensus 172 a-g--Gde~~~~~~~~~~~~mGk~ 192 (327)
T KOG0409|consen 172 A-G--GDEALFEAASPVFKLMGKN 192 (327)
T ss_pred e-c--CcHHHHHHHHHHHHHhcce
Confidence 5 3 3677888999999999954
No 104
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.69 E-value=2.2e-06 Score=96.45 Aligned_cols=215 Identities=10% Similarity=0.112 Sum_probs=139.1
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHH-----------HHHcCceecC---------CC
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GT 168 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~d---------~~ 168 (462)
+.+++|+|||.|.||..||..+..+ |++|++.+...+ ..+. ..+.|..... ..
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~------G~~V~l~d~~~~-~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~ 383 (715)
T PRK11730 311 KPVKQAAVLGAGIMGGGIAYQSASK------GVPVIMKDINQK-ALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRP 383 (715)
T ss_pred cccceEEEECCchhHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE
Confidence 4568999999999999999999998 999887766533 2222 2222321100 00
Q ss_pred cCCHhhhhccCCeEEEeecchhHH--HHHHHHHhcCCCCcEE-EEeccchHHHhhhccccCCCCccEEecccCCCchhhH
Q 012479 169 LGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (462)
Q Consensus 169 ~~~~~eav~~ADvViLavpd~a~~--~vl~eI~~~Lk~gaiL-~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr 245 (462)
..+. +.+++||+||=++|..... +++.++.++++++++| +-++++.+..+.+ .....-+|+..|+--|.+..+
T Consensus 384 ~~~~-~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~---~~~~p~r~~g~Hff~P~~~~~ 459 (715)
T PRK11730 384 TLDY-AGFERVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTISISLLAK---ALKRPENFCGMHFFNPVHRMP 459 (715)
T ss_pred eCCH-HHhcCCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCCccEEEEecCCcccccc
Confidence 2344 5679999999999976653 6999999999999987 4677788776654 223334799999988887621
Q ss_pred HhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHH-HHHHHHHHHH
Q 012479 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVH-GIVESLFRRF 324 (462)
Q Consensus 246 ~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~p-aliea~~d~~ 324 (462)
.-= |.++...+++.++.+.+++..+|..-++ + .+ .. +-+.+=+. +++. -+-.+
T Consensus 460 -------------lVE-vv~g~~T~~~~~~~~~~~~~~lgk~pv~-v---~d--~p-----Gfv~nRi~~~~~~-ea~~l 513 (715)
T PRK11730 460 -------------LVE-VIRGEKTSDETIATVVAYASKMGKTPIV-V---ND--CP-----GFFVNRVLFPYFA-GFSQL 513 (715)
T ss_pred -------------eEE-eeCCCCCCHHHHHHHHHHHHHhCCceEE-e---cC--cC-----chhHHHHHHHHHH-HHHHH
Confidence 222 4467888999999999999999965222 1 11 11 11222222 2222 23346
Q ss_pred HHcCCCHHHHHHHHHHHH---HHHHHHHHHHhcHHHHHHh
Q 012479 325 TENGMNEDLAYKNTVECI---TGIISKIISTQGMLAVYNS 361 (462)
Q Consensus 325 v~~G~~~e~A~~~~~e~i---~Gli~~li~e~G~~~m~~~ 361 (462)
++.|.++++-=...-+.+ .| --+++-..|++.+++.
T Consensus 514 v~~Ga~~e~ID~a~~~~~G~~~G-P~~~~D~~Gld~~~~~ 552 (715)
T PRK11730 514 LRDGADFRQIDKVMEKQFGWPMG-PAYLLDVVGIDTAHHA 552 (715)
T ss_pred HHcCCCHHHHHHHHHhhCCCccC-HHHHHHhhchHHHHHH
Confidence 888988876554322211 35 3456667777655543
No 105
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=98.68 E-value=6.7e-07 Score=100.80 Aligned_cols=212 Identities=11% Similarity=0.124 Sum_probs=136.1
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHH-----------HHHcCceecC---------CC
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-----------ARAAGFTEEN---------GT 168 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~-----------A~~~G~~~~d---------~~ 168 (462)
..+++|+|||.|.||..||..+..+ |++|++.+...+ ..+. ..+.|-.... ..
T Consensus 333 ~~i~~v~ViGaG~MG~gIA~~~a~~------G~~V~l~d~~~~-~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~ 405 (737)
T TIGR02441 333 RPVKTLAVLGAGLMGAGIAQVSVDK------GLKTVLKDATPA-GLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTP 405 (737)
T ss_pred CcccEEEEECCCHhHHHHHHHHHhC------CCcEEEecCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE
Confidence 3458999999999999999999998 999887665432 2222 2222211000 00
Q ss_pred cCCHhhhhccCCeEEEeecchhHH--HHHHHHHhcCCCCcEEE-EeccchHHHhhhccccCCCCccEEecccCCCchhhH
Q 012479 169 LGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (462)
Q Consensus 169 ~~~~~eav~~ADvViLavpd~a~~--~vl~eI~~~Lk~gaiL~-~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr 245 (462)
..+. +++++||+||=++|.+... +++.++.++++++++|. -++++.+..+.. .....-+|+..|+--|.+..+
T Consensus 406 ~~~~-~~~~~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~---~~~~p~r~ig~Hff~P~~~m~ 481 (737)
T TIGR02441 406 TLDY-SGFKNADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAA---VSSRPEKVIGMHYFSPVDKMQ 481 (737)
T ss_pred eCCH-HHhccCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh---hcCCccceEEEeccCCcccCc
Confidence 2344 4679999999999976653 69999999999999874 667787776654 222334799999988887721
Q ss_pred HhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHH-H-HHHHHHHH
Q 012479 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVH-G-IVESLFRR 323 (462)
Q Consensus 246 ~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~p-a-liea~~d~ 323 (462)
.-= |..+...+++.++.+.+++..+|..-++ + .+ ..-| +.+=+. + +-|++ .
T Consensus 482 -------------LvE-vv~g~~Ts~~~~~~~~~~~~~lgk~pv~-v---~d--~pGF-----i~NRi~~~~~~ea~--~ 534 (737)
T TIGR02441 482 -------------LLE-IITHDGTSKDTLASAVAVGLKQGKVVIV-V---KD--GPGF-----YTTRCLGPMLAEVI--R 534 (737)
T ss_pred -------------eEE-EeCCCCCCHHHHHHHHHHHHHCCCeEEE-E---CC--cCCc-----hHHHHHHHHHHHHH--H
Confidence 122 4457788999999999999999965222 1 11 1111 222222 2 33333 4
Q ss_pred HHHcCCCHHHHHHHHHHHH---HHHHHHHHHHhcHHHHHH
Q 012479 324 FTENGMNEDLAYKNTVECI---TGIISKIISTQGMLAVYN 360 (462)
Q Consensus 324 ~v~~G~~~e~A~~~~~e~i---~Gli~~li~e~G~~~m~~ 360 (462)
+++.|+++++-=.. +..+ .| --.++-..|++.+++
T Consensus 535 lv~eGv~~~~ID~a-~~~~G~p~G-P~~l~D~vGld~~~~ 572 (737)
T TIGR02441 535 LLQEGVDPKKLDKL-TTKFGFPVG-AATLADEVGVDVAEH 572 (737)
T ss_pred HHHcCCCHHHHHHH-HHHcCCCCC-HHHHHHHhhHHHHHH
Confidence 78889988765552 2221 14 235666667654443
No 106
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=98.67 E-value=8.7e-07 Score=99.60 Aligned_cols=215 Identities=10% Similarity=0.074 Sum_probs=136.8
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHH-----------HHcCceecC---------CC
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEEN---------GT 168 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A-----------~~~G~~~~d---------~~ 168 (462)
+.+++|+|||.|.||..||..+..+ |++|++.+...+ ..+.+ .+.|-.... ..
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~------G~~V~l~d~~~~-~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~ 383 (714)
T TIGR02437 311 KDVKQAAVLGAGIMGGGIAYQSASK------GTPIVMKDINQH-SLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITP 383 (714)
T ss_pred cccceEEEECCchHHHHHHHHHHhC------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEE
Confidence 3568999999999999999999999 999887765533 22221 122211000 00
Q ss_pred cCCHhhhhccCCeEEEeecchhHH--HHHHHHHhcCCCCcEEE-EeccchHHHhhhccccCCCCccEEecccCCCchhhH
Q 012479 169 LGDIYETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (462)
Q Consensus 169 ~~~~~eav~~ADvViLavpd~a~~--~vl~eI~~~Lk~gaiL~-~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr 245 (462)
..+. +.+++||+||=++|.+... +++.++.+.++|+++|. -++++.+..+.. ..+..-+|+..|+--|.+..+
T Consensus 384 ~~~~-~~~~~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~---~~~~p~r~ig~Hff~P~~~~~ 459 (714)
T TIGR02437 384 TLSY-AGFDNVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTISISLLAK---ALKRPENFCGMHFFNPVHRMP 459 (714)
T ss_pred eCCH-HHhcCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh---hcCCcccEEEEecCCCcccCc
Confidence 2344 5679999999999976653 69999999999999874 667777776654 223334799999988887721
Q ss_pred HhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHHHHHHHHHHHH
Q 012479 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFT 325 (462)
Q Consensus 246 ~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~paliea~~d~~v 325 (462)
.-= |.++...+++.++.+.+++..+|..-|+ + .+ .. +-+.+=+..-+-.-.-.++
T Consensus 460 -------------lvE-vv~g~~Ts~~~~~~~~~~~~~lgk~pv~-v---~d--~p-----Gfi~NRl~~~~~~ea~~l~ 514 (714)
T TIGR02437 460 -------------LVE-VIRGEKSSDETIATVVAYASKMGKTPIV-V---ND--CP-----GFFVNRVLFPYFGGFSKLL 514 (714)
T ss_pred -------------eEe-ecCCCCCCHHHHHHHHHHHHHcCCEEEE-e---CC--cc-----cchHHHHHHHHHHHHHHHH
Confidence 112 4467788999999999999999965222 1 11 11 1122222221112233467
Q ss_pred HcCCCHHHHHHHHHHH---HHHHHHHHHHHhcHHHHHH
Q 012479 326 ENGMNEDLAYKNTVEC---ITGIISKIISTQGMLAVYN 360 (462)
Q Consensus 326 ~~G~~~e~A~~~~~e~---i~Gli~~li~e~G~~~m~~ 360 (462)
+.|.++++-=...-+. =.|+ -.++-..|++.+++
T Consensus 515 ~eG~~~~~ID~a~~~~~G~p~GP-f~l~D~~Gld~~~~ 551 (714)
T TIGR02437 515 RDGADFVRIDKVMEKQFGWPMGP-AYLLDVVGIDTGHH 551 (714)
T ss_pred HCCCCHHHHHHHHHhcCCCccCH-HHHHHhhhHHHHHH
Confidence 8898887654421111 1252 45666667755443
No 107
>PF14748 P5CR_dimer: Pyrroline-5-carboxylate reductase dimerisation; PDB: 2RCY_D 3TRI_A 2IZZ_B 2GR9_B 2GRA_B 2GER_C 1YQG_A 2AG8_A 3GT0_A 2AMF_E ....
Probab=98.67 E-value=6.6e-08 Score=84.01 Aligned_cols=66 Identities=18% Similarity=0.276 Sum_probs=58.1
Q ss_pred cccchhhhHhHHhHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcH--HHHHHhcCCc
Q 012479 299 RSDIFGERGILLGAVHG----IVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGM--LAVYNSFSGE 365 (462)
Q Consensus 299 ~~dlfgeqtvL~G~~pa----liea~~d~~v~~G~~~e~A~~~~~e~i~Gli~~li~e~G~--~~m~~~vs~~ 365 (462)
+++.|+..++++||+|+ +++++.+.+++.|+++++|.+++.|++.| .++|+.+++. ..+++.|+.+
T Consensus 2 ~E~~~d~~talsGsgpA~~~~~~eal~~a~v~~Gl~~~~A~~lv~~t~~G-~a~ll~~~~~~~~~l~~~v~tP 73 (107)
T PF14748_consen 2 DEDQFDAATALSGSGPAYFFLFIEALADAAVAQGLPREEARKLVAQTFIG-AAKLLEESGRSPAELRDEVTTP 73 (107)
T ss_dssp SGGGHHHHHHHCTTHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH-HHHHHHHCSS-HHHHHHHHS-T
T ss_pred CHHHHhHHHHHhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HHHHHHccCCCHHHHhhhccCC
Confidence 45688899999999998 89999999999999999999999999999 8999998885 9999999965
No 108
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=98.65 E-value=1e-07 Score=97.89 Aligned_cols=138 Identities=22% Similarity=0.256 Sum_probs=94.5
Q ss_pred ccccccceeecCccccccc---ccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCc
Q 012479 86 LADRDEYIVRGGRDLFNLL---PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF 162 (462)
Q Consensus 86 ~~~~~e~~~~~~~~~f~~~---~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~ 162 (462)
|-+-.|. ++.|+|..... ...++| |+|+|+|+|++|..+|++|... |..+.+..|. ....+.+.+.+.
T Consensus 136 ~~~g~~~-~~~g~w~~~~~~~~g~~~~g-K~vgilG~G~IG~~ia~rL~~F------g~~i~y~~r~-~~~~~~~~~~~~ 206 (336)
T KOG0069|consen 136 FSEGNEM-VRNGGWGWAGGWPLGYDLEG-KTVGILGLGRIGKAIAKRLKPF------GCVILYHSRT-QLPPEEAYEYYA 206 (336)
T ss_pred hhhhhhh-hhcCCccccCCccccccccC-CEEEEecCcHHHHHHHHhhhhc------cceeeeeccc-CCchhhHHHhcc
Confidence 4444443 55667722221 488999 9999999999999999999987 8444444443 444566666655
Q ss_pred eecCCCcCCHhhhhccCCeEEEeecchhHH-HHHH-HHHhcCCCCcEEE-EeccchH------HHhhhccccCCCCccEE
Q 012479 163 TEENGTLGDIYETISGSDLVLLLISDAAQA-DNYE-KIFSCMKPNSILG-LSHGFLL------GHLQSMGLDFPKNIGVI 233 (462)
Q Consensus 163 ~~~d~~~~~~~eav~~ADvViLavpd~a~~-~vl~-eI~~~Lk~gaiL~-~a~G~~i------~~~~~~~i~~p~~v~VV 233 (462)
. ..+.+|.+.++|+|+++.|..... .++. ++..+||+|.+|+ .+=|--+ ..+.+ +.....+.||.
T Consensus 207 ~-----~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~s-G~i~~aGlDVf 280 (336)
T KOG0069|consen 207 E-----FVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKS-GKIAGAGLDVF 280 (336)
T ss_pred c-----ccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhc-CCccccccccc
Confidence 4 358999999999999999977764 5776 7999999999876 3334311 12222 22234567888
Q ss_pred ecccC
Q 012479 234 AVCPK 238 (462)
Q Consensus 234 ~v~Pn 238 (462)
--.|+
T Consensus 281 ~~EP~ 285 (336)
T KOG0069|consen 281 EPEPP 285 (336)
T ss_pred CCCCC
Confidence 88883
No 109
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=98.64 E-value=1.5e-06 Score=92.26 Aligned_cols=201 Identities=13% Similarity=0.100 Sum_probs=113.6
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecC------------CCcCCHhhhhccC
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN------------GTLGDIYETISGS 179 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d------------~~~~~~~eav~~A 179 (462)
+||+|||+|.||..+|.+|.+ |++|++.++. +...+... .|..... -...+..+++++|
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-------~~~V~g~D~~-~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~a 77 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-------SRQVVGFDVN-KKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKEC 77 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-------CCEEEEEeCC-HHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCC
Confidence 799999999999999999764 6777655544 43344433 4432000 0123445678999
Q ss_pred CeEEEeecchh-------HHHH---HHHHHhcCCCCcEEEEeccc----hHH----Hhhh-ccccCCCCccEEeccc--C
Q 012479 180 DLVLLLISDAA-------QADN---YEKIFSCMKPNSILGLSHGF----LLG----HLQS-MGLDFPKNIGVIAVCP--K 238 (462)
Q Consensus 180 DvViLavpd~a-------~~~v---l~eI~~~Lk~gaiL~~a~G~----~i~----~~~~-~~i~~p~~v~VV~v~P--n 238 (462)
|+||+|+|... ...+ .+.|.+++++|++|++.+-+ .-. .+++ .++....+ .++...| -
T Consensus 78 dvvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~-~~~~~~PE~v 156 (425)
T PRK15182 78 NFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQD-FYVGYSPERI 156 (425)
T ss_pred CEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCC-eeEeeCCCcC
Confidence 99999999541 1233 34799999999988766533 211 1111 01121111 2333333 3
Q ss_pred CCchhhHHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC-cccccchhhhccccchhhhHhHHhHHHHHH
Q 012479 239 GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP-FTFATTLEQEYRSDIFGERGILLGAVHGIV 317 (462)
Q Consensus 239 gpg~~vr~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~-~viettf~~E~~~dlfgeqtvL~G~~pali 317 (462)
.+|....++.. .+- +.... +.+..+.+..+.+.+... .+..++. .+-+.-.+-+.+ +...--+++
T Consensus 157 ~~G~a~~~~~~---------~~r-iv~G~--~~~~~~~~~~ly~~~~~~~~~~~~~~-~~AE~~Kl~~N~-~~av~Ia~~ 222 (425)
T PRK15182 157 NPGDKKHRLTN---------IKK-ITSGS--TAQIAELIDEVYQQIISAGTYKAESI-KVAEAAKVIENT-QRDLNIALV 222 (425)
T ss_pred CCCcccccccC---------CCe-EEECC--CHHHHHHHHHHHHHHhhcCcEEecCH-HHHHHHHHHHHH-HHHHHHHHH
Confidence 45555332221 333 33343 467778888999888632 2222222 222222222322 223333577
Q ss_pred HHHHHHHHHcCCCHHHHHH
Q 012479 318 ESLFRRFTENGMNEDLAYK 336 (462)
Q Consensus 318 ea~~d~~v~~G~~~e~A~~ 336 (462)
.-++..+-+.|++.++.+.
T Consensus 223 NE~a~lae~~GiD~~~v~~ 241 (425)
T PRK15182 223 NELAIIFNRLNIDTEAVLR 241 (425)
T ss_pred HHHHHHHHHhCcCHHHHHH
Confidence 7778888899999987765
No 110
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=98.64 E-value=3.2e-08 Score=88.86 Aligned_cols=123 Identities=17% Similarity=0.075 Sum_probs=78.4
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCC-cEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEee
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G-~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
+++ ++|+|||+|.||.++++.|++. | .+|.+.+++..+..+.+.+.+.........+..++++++|+||+++
T Consensus 17 ~~~-~~i~iiG~G~~g~~~a~~l~~~------g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~ 89 (155)
T cd01065 17 LKG-KKVLILGAGGAARAVAYALAEL------GAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTT 89 (155)
T ss_pred CCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCc
Confidence 567 9999999999999999999987 6 4677777664444444555443100001456777889999999999
Q ss_pred cchhH-HHHHHHHHhcCCCCcEEEEeccchH--HHhhhccccCCCCccEEecccCCC
Q 012479 187 SDAAQ-ADNYEKIFSCMKPNSILGLSHGFLL--GHLQSMGLDFPKNIGVIAVCPKGM 240 (462)
Q Consensus 187 pd~a~-~~vl~eI~~~Lk~gaiL~~a~G~~i--~~~~~~~i~~p~~v~VV~v~Pngp 240 (462)
|+..+ .+-.......++++++|++++.... ...+. .-..++.+|..+|+-.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~v~D~~~~~~~~~l~~~---~~~~g~~~v~g~~~~~ 143 (155)
T cd01065 90 PVGMKPGDELPLPPSLLKPGGVVYDVVYNPLETPLLKE---ARALGAKTIDGLEMLV 143 (155)
T ss_pred CCCCCCCCCCCCCHHHcCCCCEEEEcCcCCCCCHHHHH---HHHCCCceeCCHHHHH
Confidence 99886 1111101233688999888865432 11111 1123567777777543
No 111
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=98.64 E-value=7.4e-08 Score=101.62 Aligned_cols=149 Identities=21% Similarity=0.213 Sum_probs=96.1
Q ss_pred eecCcccccc-cccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCH
Q 012479 94 VRGGRDLFNL-LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172 (462)
Q Consensus 94 ~~~~~~~f~~-~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~ 172 (462)
+|+|+|.... ....|.| |+|||||+|++|..+|+.++.. |.+|+++++.. . ....++.. ..+.
T Consensus 134 ~~~g~w~~~~~~~~~L~g-ktvGIiG~G~IG~~vA~~~~~f------Gm~V~~~d~~~-~----~~~~~~~~----~~~l 197 (409)
T PRK11790 134 AHRGGWNKSAAGSFEVRG-KTLGIVGYGHIGTQLSVLAESL------GMRVYFYDIED-K----LPLGNARQ----VGSL 197 (409)
T ss_pred HHcCcccccccCcccCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCCc-c----cccCCcee----cCCH
Confidence 4668886432 2367999 9999999999999999999977 99987655431 1 11123332 4589
Q ss_pred hhhhccCCeEEEeecchhH-HHHHH-HHHhcCCCCcEEEEec-cch------HHHhhhccccCCCCccEEecccCCCchh
Q 012479 173 YETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPS 243 (462)
Q Consensus 173 ~eav~~ADvViLavpd~a~-~~vl~-eI~~~Lk~gaiL~~a~-G~~------i~~~~~~~i~~p~~v~VV~v~Pngpg~~ 243 (462)
+|++++||+|++++|.... ..++. +.+..||+|++|+-++ |-. +..+++..+ .....||.--.|-.+.+.
T Consensus 198 ~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i-~gaalDVf~~EP~~~~~~ 276 (409)
T PRK11790 198 EELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHL-AGAAIDVFPVEPKSNGDP 276 (409)
T ss_pred HHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCc-eEEEEcCCCCCCCCcccc
Confidence 9999999999999996554 55775 6888999999877444 431 223332111 123456666666432210
Q ss_pred h-HHhhhcCccccCCCceEEEeecc
Q 012479 244 V-RRLYVQGKEINGAGINSSFAVHQ 267 (462)
Q Consensus 244 v-r~lf~~G~~~~G~Gv~aliav~q 267 (462)
. ..++.. -+++++||-
T Consensus 277 ~~~pL~~~--------~nvilTPHi 293 (409)
T PRK11790 277 FESPLRGL--------DNVILTPHI 293 (409)
T ss_pred ccchhhcC--------CCEEECCcC
Confidence 0 113322 367788886
No 112
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=98.63 E-value=2.4e-06 Score=95.81 Aligned_cols=214 Identities=13% Similarity=0.117 Sum_probs=134.9
Q ss_pred CCCEEEEEcccchHHHHHHHHH-HhhhhhcCCcEEEEEecCCchhHHHH-----------HHcCceecC---------CC
Q 012479 110 GINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEEN---------GT 168 (462)
Q Consensus 110 gikkIgIIG~G~mG~AiA~~Lr-ds~~~~g~G~~Vivg~r~~~~s~~~A-----------~~~G~~~~d---------~~ 168 (462)
.+++|+|||.|.||..+|.-+. .+ |++|++.+...+ ..+.+ .+.|-.... ..
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~------G~~V~l~d~~~~-~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~ 375 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKA------GIPVRIKDINPQ-GINNALKYAWKLLDKGVKRRHMTPAERDNQMALITG 375 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHc------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEE
Confidence 4589999999999999999886 57 999887665432 22222 122211000 01
Q ss_pred cCCHhhhhccCCeEEEeecchhH--HHHHHHHHhcCCCCcEEE-EeccchHHHhhhccccCCCCccEEecccCCCchhhH
Q 012479 169 LGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVR 245 (462)
Q Consensus 169 ~~~~~eav~~ADvViLavpd~a~--~~vl~eI~~~Lk~gaiL~-~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr 245 (462)
..+. +++++||+||=++|.... .+++.++-++++++++|. -++++.+..+.+ .+...-+|+..|+--|.+..+
T Consensus 376 ~~~~-~~~~~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~---~~~~p~r~~g~HffnP~~~~~ 451 (699)
T TIGR02440 376 TTDY-RGFKDVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSLPIGQIAA---AASRPENVIGLHYFSPVEKMP 451 (699)
T ss_pred eCCh-HHhccCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCCCHHHHHH---hcCCcccEEEEecCCccccCc
Confidence 2344 578999999999997765 369999999999999874 667788776655 222334799999988877621
Q ss_pred HhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHH-HHHHHHHHH
Q 012479 246 RLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHG-IVESLFRRF 324 (462)
Q Consensus 246 ~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~pa-liea~~d~~ 324 (462)
.-= |.++...+++.++.+.++++.+|..-++ + .+ ..-| +..=.+.. +.|++ .+
T Consensus 452 -------------lVE-vv~g~~T~~~~~~~~~~~~~~~gk~pv~-v---~d--~pGf----i~nRl~~~~~~Ea~--~l 505 (699)
T TIGR02440 452 -------------LVE-VIPHAGTSEQTIATTVALAKKQGKTPIV-V---AD--KAGF----YVNRILAPYMNEAA--RL 505 (699)
T ss_pred -------------eEE-EeCCCCCCHHHHHHHHHHHHHcCCeEEE-E---cc--ccch----HHHHHHHHHHHHHH--HH
Confidence 222 4557788999999999999999965222 1 11 1111 11112222 33332 35
Q ss_pred HHcCCCHHHHHHHHH--HHHHHHHHHHHHHhcHHHHHHh
Q 012479 325 TENGMNEDLAYKNTV--ECITGIISKIISTQGMLAVYNS 361 (462)
Q Consensus 325 v~~G~~~e~A~~~~~--e~i~Gli~~li~e~G~~~m~~~ 361 (462)
++.|.++++-=...- ..-.| .-.++-..|++.+++.
T Consensus 506 ~~~G~~~~dID~a~~~~G~p~G-Pf~l~D~vGld~~~~i 543 (699)
T TIGR02440 506 LLEGEPVEHIDKALVKFGFPVG-PITLLDEVGIDVGAKI 543 (699)
T ss_pred HHCCCCHHHHHHHHHHcCCCcC-HHHHHHHhchHHHHHH
Confidence 678888766544321 11125 3456666677555443
No 113
>PRK06487 glycerate dehydrogenase; Provisional
Probab=98.63 E-value=8.2e-08 Score=97.98 Aligned_cols=156 Identities=21% Similarity=0.146 Sum_probs=100.4
Q ss_pred eeecCcccccc-------cccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec
Q 012479 93 IVRGGRDLFNL-------LPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE 165 (462)
Q Consensus 93 ~~~~~~~~f~~-------~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~ 165 (462)
-+|+|+|.... ....|.| ++|||||+|++|..+|+.++.. |.+|+++++.... ....
T Consensus 124 ~~~~g~W~~~~~~~~~~~~~~~l~g-ktvgIiG~G~IG~~vA~~l~~f------gm~V~~~~~~~~~-------~~~~-- 187 (317)
T PRK06487 124 AVAAGRWQQSSQFCLLDFPIVELEG-KTLGLLGHGELGGAVARLAEAF------GMRVLIGQLPGRP-------ARPD-- 187 (317)
T ss_pred HHHcCCCccCcccccccCcccccCC-CEEEEECCCHHHHHHHHHHhhC------CCEEEEECCCCCc-------cccc--
Confidence 34678886432 1247999 9999999999999999999876 8888766543211 1122
Q ss_pred CCCcCCHhhhhccCCeEEEeecchhH-HHHHH-HHHhcCCCCcEEEEe-ccch------HHHhhhccccCCCCccEEecc
Q 012479 166 NGTLGDIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLS-HGFL------LGHLQSMGLDFPKNIGVIAVC 236 (462)
Q Consensus 166 d~~~~~~~eav~~ADvViLavpd~a~-~~vl~-eI~~~Lk~gaiL~~a-~G~~------i~~~~~~~i~~p~~v~VV~v~ 236 (462)
..+.+|++++||+|++++|-... ..++. +.+..||+|++|+-+ -|-. +..+++ +.......||.-..
T Consensus 188 ---~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~-g~i~gAaLDVf~~E 263 (317)
T PRK06487 188 ---RLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRS-GHLGGAATDVLSVE 263 (317)
T ss_pred ---ccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHc-CCeeEEEeecCCCC
Confidence 34789999999999999996544 45776 688899999987744 3531 223332 12222356788777
Q ss_pred cCCCchhhHHhhhcCccccCCCceEEEeecc-CCCHHHHHHH
Q 012479 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQ-DVDGRATNVA 277 (462)
Q Consensus 237 Pngpg~~vr~lf~~G~~~~G~Gv~aliav~q-d~tgea~e~a 277 (462)
|-.+.+. ++... =-+.+++||- ..+.+..+.+
T Consensus 264 P~~~~~p---l~~~~------~pnvilTPHia~~t~e~~~~~ 296 (317)
T PRK06487 264 PPVNGNP---LLAPD------IPRLIVTPHSAWGSREARQRI 296 (317)
T ss_pred CCCCCCc---hhhcC------CCCEEECCccccCCHHHHHHH
Confidence 7543332 33200 0367788886 3344544433
No 114
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=98.63 E-value=1.7e-06 Score=88.28 Aligned_cols=152 Identities=16% Similarity=0.211 Sum_probs=109.2
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCc----------hhHHHHHHcCceecCC---------CcCC
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----------RSFAEARAAGFTEENG---------TLGD 171 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~----------~s~~~A~~~G~~~~d~---------~~~~ 171 (462)
++||+|||.|.||+.+|..+... |++|++.+.+.. ++.++..+.|-..++. ...+
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~------G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~ 76 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALA------GYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTD 76 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhc------CCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCc
Confidence 58999999999999999999887 899888776522 2223333334221110 0122
Q ss_pred HhhhhccCCeEEEeecchhH--HHHHHHHHhcCCCCcEE-EEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhh
Q 012479 172 IYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (462)
Q Consensus 172 ~~eav~~ADvViLavpd~a~--~~vl~eI~~~Lk~gaiL-~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf 248 (462)
+. ++++||+||=+++-..- .+++.++-.+.+|+++| +-.+++.+..+.+. ..-| -+|+..|+--|.+.
T Consensus 77 ~~-~l~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~it~ia~~-~~rp--er~iG~HFfNP~~~----- 147 (307)
T COG1250 77 LA-ALKDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLSITELAEA-LKRP--ERFIGLHFFNPVPL----- 147 (307)
T ss_pred hh-HhccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCCHHHHHHH-hCCc--hhEEEEeccCCCCc-----
Confidence 22 78999999999995544 46999999999999998 57788887666542 2323 36999999888877
Q ss_pred hcCccccCCCceEE-EeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 249 VQGKEINGAGINSS-FAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 249 ~~G~~~~G~Gv~al-iav~qd~tgea~e~a~al~~aiG~~ 287 (462)
|+.+ +......+++.++.+.+++..+|.+
T Consensus 148 ----------m~LVEvI~g~~T~~e~~~~~~~~~~~igK~ 177 (307)
T COG1250 148 ----------MPLVEVIRGEKTSDETVERVVEFAKKIGKT 177 (307)
T ss_pred ----------ceeEEEecCCCCCHHHHHHHHHHHHHcCCC
Confidence 3331 3346677889999999999999943
No 115
>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase. This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.
Probab=98.62 E-value=3.4e-06 Score=84.45 Aligned_cols=199 Identities=16% Similarity=0.190 Sum_probs=139.7
Q ss_pred HcCceecCCCcCCHhhhhccCCeEEEeecchh-HHHHHHHHHhcCCCCcEEEEeccch---HHHhhhccccCCCCccEEe
Q 012479 159 AAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVIA 234 (462)
Q Consensus 159 ~~G~~~~d~~~~~~~eav~~ADvViLavpd~a-~~~vl~eI~~~Lk~gaiL~~a~G~~---i~~~~~~~i~~p~~v~VV~ 234 (462)
+.|+.+ +.|..|+++++|++|+=+|-.. +.+++++|.+++++|++|+.++=++ +.++-+ ... ++|+.|..
T Consensus 124 daGvkV----tsDD~EAv~~aei~I~ftPfG~~q~~Iikkii~~lpEgAII~~tCTIpt~~ly~ilE-~l~-R~DvgVsS 197 (340)
T TIGR01723 124 DLGLKV----TTDDREAVEDADIIITWLPKGNKQPDIIKKFIDDIPEGAIVTHACTIPTTKFAKIFE-DLG-REDLNVTS 197 (340)
T ss_pred HcCceE----ecCcHHHhcCCCEEEEEcCCCCCchHHHHHHHhhCCCCCEEeccccCChHHHHHHHH-hhC-cccCCeec
Confidence 578876 6788899999999999999776 7899999999999999998777653 212211 122 58999999
Q ss_pred cccCC-CchhhHHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC-cccccchhhhccccchhhhHhHHhH
Q 012479 235 VCPKG-MGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP-FTFATTLEQEYRSDIFGERGILLGA 312 (462)
Q Consensus 235 v~Png-pg~~vr~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~-~viettf~~E~~~dlfgeqtvL~G~ 312 (462)
.||-+ |+.. |--+ + ...-+++++.+....|.+..|.. +++ ..|+.+..+-+|-.
T Consensus 198 ~HPaaVPgt~--------------~q~Y-i-~egyAtEEqI~klveL~~sa~k~ay~~--------PA~LvspV~DMgS~ 253 (340)
T TIGR01723 198 YHPGCVPEMK--------------GQVY-I-AEGYASEEAVNKLYELGKKARGKAFKM--------PANLLGPVCDMCSA 253 (340)
T ss_pred cCCCCCCCCC--------------CceE-e-ecccCCHHHHHHHHHHHHHhCCCeeec--------chhhccchhhHHHH
Confidence 99953 3222 2222 3 36778999999999999999975 222 33355555555445
Q ss_pred HHH----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCCcchhhhchhhccCchhHHHHHHH
Q 012479 313 VHG----IVESLFRRFTE-NGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYE 387 (462)
Q Consensus 313 ~pa----liea~~d~~v~-~G~~~e~A~~~~~e~i~Gli~~li~e~G~~~m~~~vs~~~~aeyg~~~~~~~~~~~~~m~e 387 (462)
+.+ .+..-++..++ .|-|.+++-..+.++++. ++.|+.++|+..|.+.+.. .+--|.+-|--+.|..+++..
T Consensus 254 VTAv~~aGiL~Y~~~~t~IlgAP~~miq~qa~eaL~t-masLme~~GI~gm~~aLnP--eaL~~tAdSM~~~~~q~~L~~ 330 (340)
T TIGR01723 254 VTAIVYAGLLAYRDAVTKILGAPADFAQMMADEALTQ-IHNLMEEKGIDKMEEALDP--AALLGTADSMNFGPLADILPT 330 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-HHHHHHHhhHHHHHHhcCH--HHHhhhhhhcccchHHHHHHH
Confidence 554 44455566655 599999999999999995 9999999999999999874 332333222223444444444
Q ss_pred HHH
Q 012479 388 CYE 390 (462)
Q Consensus 388 ~~~ 390 (462)
.|+
T Consensus 331 aL~ 333 (340)
T TIGR01723 331 ALE 333 (340)
T ss_pred HHH
Confidence 443
No 116
>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=98.62 E-value=3e-06 Score=84.68 Aligned_cols=176 Identities=17% Similarity=0.200 Sum_probs=130.4
Q ss_pred HHcCceecCCCcCCHhhhhccCCeEEEeecchh-HHHHHHHHHhcCCCCcEEEEeccch---HHHhhhccccCCCCccEE
Q 012479 158 RAAGFTEENGTLGDIYETISGSDLVLLLISDAA-QADNYEKIFSCMKPNSILGLSHGFL---LGHLQSMGLDFPKNIGVI 233 (462)
Q Consensus 158 ~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a-~~~vl~eI~~~Lk~gaiL~~a~G~~---i~~~~~~~i~~p~~v~VV 233 (462)
++.|+.+ +.|..|+++++|++|+=+|-.. +.+++++|.+++++|++|+.++=++ +.++-+ ... ++|+.|.
T Consensus 125 EdaGvkV----tsDD~EAvk~aei~I~ftPfG~~t~~Iikki~~~ipEgAII~~tCTIpt~~ly~~le-~l~-R~DvgIs 198 (342)
T PRK00961 125 EDLGLKV----TTDDREAVADADIVITWLPKGGMQPDIIEKFADDIKEGAIVTHACTIPTTKFAKIFK-DLG-RDDLNVT 198 (342)
T ss_pred HHcCceE----ecCcHHHhcCCCEEEEecCCCCCchHHHHHHHhhCCCCCEEeccccCCHHHHHHHHH-HhC-cccCCee
Confidence 3468876 6788899999999999999776 7899999999999999998777553 222211 122 6899999
Q ss_pred ecccCC-CchhhHHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC-cccccchhhhccccchhhhHhHHh
Q 012479 234 AVCPKG-MGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP-FTFATTLEQEYRSDIFGERGILLG 311 (462)
Q Consensus 234 ~v~Png-pg~~vr~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~-~viettf~~E~~~dlfgeqtvL~G 311 (462)
..||-+ |+.. |-.. ++ ..-+++++.+....|.+..|.. +++ ..|+.+..+-+|-
T Consensus 199 S~HPaaVPgt~--------------Gq~~-i~-egyAtEEqI~klveL~~sa~k~ay~~--------PA~lvspV~DMgS 254 (342)
T PRK00961 199 SYHPGAVPEMK--------------GQVY-IA-EGYADEEAVEKLYEIGKKARGNAFKM--------PANLIGPVCDMCS 254 (342)
T ss_pred ccCCCCCCCCC--------------Ccee-cc-cccCCHHHHHHHHHHHHHhCCCeeec--------chhhcchhhhHHH
Confidence 999953 3322 2222 22 4567999999999999999975 222 2345555555544
Q ss_pred HHHH----HHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCC
Q 012479 312 AVHG----IVESLFRRFTE-NGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSG 364 (462)
Q Consensus 312 ~~pa----liea~~d~~v~-~G~~~e~A~~~~~e~i~Gli~~li~e~G~~~m~~~vs~ 364 (462)
.+.+ -+..-++..++ .|-|.+++-..+.+++.. ++.|+.++|+..|.+.+..
T Consensus 255 ~VTAv~~aGiL~Y~~~~tqIlgAP~~mie~qa~eaL~t-masLme~~GI~gm~~aLnP 311 (342)
T PRK00961 255 AVTAIVYAGILAYRDAVTQILGAPADFAQMMADEALTQ-ITALMREEGIDNMEEALDP 311 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-HHHHHHHhhHhHHHHhcCH
Confidence 5554 44455566665 599999999999999985 8999999999999999874
No 117
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=98.58 E-value=2.3e-06 Score=96.13 Aligned_cols=214 Identities=11% Similarity=0.137 Sum_probs=135.8
Q ss_pred CCCCEEEEEcccchHHHHHHHHH-HhhhhhcCCcEEEEEecCCchhHHHH-----------HHcCceecC---------C
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAEA-----------RAAGFTEEN---------G 167 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lr-ds~~~~g~G~~Vivg~r~~~~s~~~A-----------~~~G~~~~d---------~ 167 (462)
+.+++|+|||.|.||..+|..+. .. |++|++.+...+ ..+.+ .+.|-.... .
T Consensus 307 ~~i~~v~ViGaG~mG~giA~~~a~~~------G~~V~l~d~~~~-~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~ 379 (708)
T PRK11154 307 RPVNKVGVLGGGLMGGGIAYVTATKA------GLPVRIKDINPQ-GINHALKYSWDLLDKKVKRRHLKPSERDKQMALIS 379 (708)
T ss_pred CcccEEEEECCchhhHHHHHHHHHHc------CCeEEEEeCCHH-HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEE
Confidence 34689999999999999999987 77 999887665432 22222 222211000 0
Q ss_pred CcCCHhhhhccCCeEEEeecchhH--HHHHHHHHhcCCCCcEEE-EeccchHHHhhhccccCCCCccEEecccCCCchhh
Q 012479 168 TLGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSV 244 (462)
Q Consensus 168 ~~~~~~eav~~ADvViLavpd~a~--~~vl~eI~~~Lk~gaiL~-~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~v 244 (462)
.+.+. +++++||+||=++|.... .+++.++.++++|+++|. -++++.+..+.+ .....-+|+.+|+=.|.+..
T Consensus 380 ~~~~~-~~~~~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~---~~~~p~r~ig~Hff~P~~~~ 455 (708)
T PRK11154 380 GTTDY-RGFKHADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAA---AAARPEQVIGLHYFSPVEKM 455 (708)
T ss_pred EeCCh-HHhccCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHH---hcCcccceEEEecCCccccC
Confidence 02334 578999999999997665 469999999999999874 667777777655 22333479999998888762
Q ss_pred HHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHh-HHHHHHHHHHHH
Q 012479 245 RRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLG-AVHGIVESLFRR 323 (462)
Q Consensus 245 r~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G-~~paliea~~d~ 323 (462)
+ .-= |.++...+++.++.+.+++..+|...++ . .+ .. +-+.+ .+.+++...+ .
T Consensus 456 ~-------------lVE-vv~g~~Ts~~~~~~~~~~~~~~gk~pv~-v---~d--~p-----Gfi~nRl~~~~~~EA~-~ 509 (708)
T PRK11154 456 P-------------LVE-VIPHAKTSAETIATTVALAKKQGKTPIV-V---RD--GA-----GFYVNRILAPYINEAA-R 509 (708)
T ss_pred c-------------eEE-EECCCCCCHHHHHHHHHHHHHcCCceEE-E---ec--cC-----cHHHHHHHHHHHHHHH-H
Confidence 1 222 5568889999999999999999975222 1 11 11 11222 2223333333 4
Q ss_pred HHHcCCCHHHHHHHHHHHH---HHHHHHHHHHhcHHHHHHh
Q 012479 324 FTENGMNEDLAYKNTVECI---TGIISKIISTQGMLAVYNS 361 (462)
Q Consensus 324 ~v~~G~~~e~A~~~~~e~i---~Gli~~li~e~G~~~m~~~ 361 (462)
+++.|+++++-=.. +..+ .| --.++-..|++.+++.
T Consensus 510 lv~eGv~~~dID~a-~~~~G~p~G-Pf~~~D~~Gld~~~~i 548 (708)
T PRK11154 510 LLLEGEPIEHIDAA-LVKFGFPVG-PITLLDEVGIDVGTKI 548 (708)
T ss_pred HHHcCCCHHHHHHH-HHHcCCCCC-HHHHHHHhhhHHHHHH
Confidence 67788887654332 2211 14 3455666676554443
No 118
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=98.58 E-value=3.2e-06 Score=85.57 Aligned_cols=153 Identities=20% Similarity=0.222 Sum_probs=97.4
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec--CCC-------cCCHhhhhccCCeE
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGT-------LGDIYETISGSDLV 182 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~--d~~-------~~~~~eav~~ADvV 182 (462)
++|+|||.|.||..+|..|.++ |++|.+..|.. .+.-.+.|+... ++. ..+..+....+|+|
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~------g~~V~~~~r~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v 76 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARA------GFDVHFLLRSD---YEAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWV 76 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHC------CCeEEEEEeCC---HHHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEE
Confidence 7999999999999999999999 99988887753 233344565421 110 11223356789999
Q ss_pred EEeecchhHHHHHHHHHhcCCCCcEE-EEeccchH-HHhhhccccCCCCccEEe------cccCCCchhhHHhhhcCccc
Q 012479 183 LLLISDAAQADNYEKIFSCMKPNSIL-GLSHGFLL-GHLQSMGLDFPKNIGVIA------VCPKGMGPSVRRLYVQGKEI 254 (462)
Q Consensus 183 iLavpd~a~~~vl~eI~~~Lk~gaiL-~~a~G~~i-~~~~~~~i~~p~~v~VV~------v~Pngpg~~vr~lf~~G~~~ 254 (462)
|++||-.+..++++.+.+.++++.+| .+.-|+.. ..+.+ .+|+. +|+. ....+|+... +.
T Consensus 77 ilavK~~~~~~~~~~l~~~~~~~~~iv~lqNG~~~~e~l~~---~~~~~-~v~~g~~~~~a~~~~pg~v~---~~----- 144 (313)
T PRK06249 77 LVGLKTTANALLAPLIPQVAAPDAKVLLLQNGLGVEEQLRE---ILPAE-HLLGGLCFICSNRVGPGVIH---HL----- 144 (313)
T ss_pred EEEecCCChHhHHHHHhhhcCCCCEEEEecCCCCcHHHHHH---HCCCC-cEEEEeeeEeEecCCCeEEE---EC-----
Confidence 99999998889999999999888754 56668753 23333 33443 3332 3444555541 11
Q ss_pred cCCCceEEEeeccCCC-----HHHHHHHHHHHHHhCCC
Q 012479 255 NGAGINSSFAVHQDVD-----GRATNVALGWSVALGSP 287 (462)
Q Consensus 255 ~G~Gv~aliav~qd~t-----gea~e~a~al~~aiG~~ 287 (462)
|.|... +......+ .+.++...++++..|..
T Consensus 145 -~~g~~~-iG~~~~~~~~~~~~~~~~~l~~~l~~ag~~ 180 (313)
T PRK06249 145 -AYGRVN-LGYHSGPAADDGITARVEEGAALFRAAGID 180 (313)
T ss_pred -CCCcEE-EecCCCCcccchHHHHHHHHHHHHHhCCCC
Confidence 234433 43333222 35566667788888865
No 119
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=98.55 E-value=7.6e-07 Score=91.09 Aligned_cols=160 Identities=20% Similarity=0.166 Sum_probs=114.3
Q ss_pred ccccceeecCccccccc-ccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecC
Q 012479 88 DRDEYIVRGGRDLFNLL-PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN 166 (462)
Q Consensus 88 ~~~e~~~~~~~~~f~~~-~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d 166 (462)
++----++.|+|.+... .-.+.| |++||||+|.+|.-+|..++.- |..++..+.. ...+++++.|+.
T Consensus 123 ~~A~~s~k~g~wnr~~~~G~el~G-KTLgvlG~GrIGseVA~r~k~~------gm~vI~~dpi--~~~~~~~a~gvq--- 190 (406)
T KOG0068|consen 123 GQASASMKEGKWNRVKYLGWELRG-KTLGVLGLGRIGSEVAVRAKAM------GMHVIGYDPI--TPMALAEAFGVQ--- 190 (406)
T ss_pred chhheeeecCceeecceeeeEEec-cEEEEeecccchHHHHHHHHhc------CceEEeecCC--CchHHHHhccce---
Confidence 33444578899988766 789999 9999999999999999999987 8887655544 346788889998
Q ss_pred CCcCCHhhhhccCCeEEEeecchhH-HHHHH-HHHhcCCCCcEEEEec--cc-----hHHHhhhccccCCCCccEEeccc
Q 012479 167 GTLGDIYETISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH--GF-----LLGHLQSMGLDFPKNIGVIAVCP 237 (462)
Q Consensus 167 ~~~~~~~eav~~ADvViLavpd~a~-~~vl~-eI~~~Lk~gaiL~~a~--G~-----~i~~~~~~~i~~p~~v~VV~v~P 237 (462)
..+.+|+++.||.|-|.+|-... ..++. +-+..||+|..|+-++ |+ .+.-++. +..-..-+||.-..|
T Consensus 191 --~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~s-G~vaGaAlDVy~~Ep 267 (406)
T KOG0068|consen 191 --LVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALDS-GQVAGAALDVYPEEP 267 (406)
T ss_pred --eeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechHHHHHHHhc-CcccceeeecccCCC
Confidence 57999999999999999996554 45665 5777899999776443 43 1223332 223344578888888
Q ss_pred CCCchhhHHhhhcCccccCCCceEEEeeccCCCH
Q 012479 238 KGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDG 271 (462)
Q Consensus 238 ngpg~~vr~lf~~G~~~~G~Gv~aliav~qd~tg 271 (462)
...+.. ++| .+ =-+.+.+||+..+-
T Consensus 268 p~~~~~-~~L-v~-------hpnVi~TpHlgasT 292 (406)
T KOG0068|consen 268 PKNGWD-SEL-VS-------HPNVIVTPHLGAST 292 (406)
T ss_pred Cccchh-HHH-hc-------CCceeecCccccch
Confidence 665422 222 22 14667889986654
No 120
>PRK09287 6-phosphogluconate dehydrogenase; Validated
Probab=98.55 E-value=3.4e-06 Score=90.41 Aligned_cols=139 Identities=14% Similarity=0.042 Sum_probs=96.3
Q ss_pred hHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc----CceecCCCcCCHhhhhcc---CCeEEEeecchhH-HH
Q 012479 122 QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISG---SDLVLLLISDAAQ-AD 193 (462)
Q Consensus 122 mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~----G~~~~d~~~~~~~eav~~---ADvViLavpd~a~-~~ 193 (462)
||.++|+||.++ |++|.+++|..++..+..... |+.. ..+++|+++. +|+||+++|+..+ .+
T Consensus 1 MG~~mA~nL~~~------G~~V~v~nrt~~~~~~l~~~~g~~~g~~~----~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~ 70 (459)
T PRK09287 1 MGKNLALNIASH------GYTVAVYNRTPEKTDEFLAEEGKGKKIVP----AYTLEEFVASLEKPRKILLMVKAGAPVDA 70 (459)
T ss_pred CcHHHHHHHHhC------CCeEEEECCCHHHHHHHHHhhCCCCCeEe----eCCHHHHHhhCCCCCEEEEECCCchHHHH
Confidence 899999999999 999999988766655555432 4554 6789998875 8999999998766 56
Q ss_pred HHHHHHhcCCCCcEEEEeccchH---HHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeeccCCC
Q 012479 194 NYEKIFSCMKPNSILGLSHGFLL---GHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (462)
Q Consensus 194 vl~eI~~~Lk~gaiL~~a~G~~i---~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~qd~t 270 (462)
|++++.|+|.+|.+|++.+-... ....+ ..-.+++.+|. +|-.-|.. .=+ .|- + +-+.. +
T Consensus 71 Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~--~l~~~Gi~fvd-apVSGG~~---gA~-------~G~-s-iM~GG--~ 133 (459)
T PRK09287 71 VIEQLLPLLEKGDIIIDGGNSNYKDTIRREK--ELAEKGIHFIG-MGVSGGEE---GAL-------HGP-S-IMPGG--Q 133 (459)
T ss_pred HHHHHHhcCCCCCEEEECCCCCHHHHHHHHH--HHHhcCCeEEe-cCCCCCHH---HHh-------cCC-E-EEEeC--C
Confidence 88899999999999998874321 11111 11135677664 34211211 001 354 4 34565 5
Q ss_pred HHHHHHHHHHHHHhCCC
Q 012479 271 GRATNVALGWSVALGSP 287 (462)
Q Consensus 271 gea~e~a~al~~aiG~~ 287 (462)
.++.+.++-+++.+|..
T Consensus 134 ~~a~~~~~piL~~ia~~ 150 (459)
T PRK09287 134 KEAYELVAPILEKIAAK 150 (459)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 78999999999999963
No 121
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=98.47 E-value=5.6e-06 Score=86.94 Aligned_cols=195 Identities=11% Similarity=0.071 Sum_probs=104.8
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH----------------cCceecCCCcCCHhhh
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----------------AGFTEENGTLGDIYET 175 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~----------------~G~~~~d~~~~~~~ea 175 (462)
|||+|||+|.||..+|..+. . |++|++.++. ....+...+ .+.... ...+..++
T Consensus 1 mkI~VIGlGyvGl~~A~~lA-~------G~~VigvD~d-~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~--~t~~~~~~ 70 (388)
T PRK15057 1 MKITISGTGYVGLSNGLLIA-Q------NHEVVALDIL-PSRVAMLNDRISPIVDKEIQQFLQSDKIHFN--ATLDKNEA 70 (388)
T ss_pred CEEEEECCCHHHHHHHHHHH-h------CCcEEEEECC-HHHHHHHHcCCCCCCCcCHHHHHHhCCCcEE--Eecchhhh
Confidence 58999999999999996554 6 8887655544 433444332 111110 02346788
Q ss_pred hccCCeEEEeecch-----------hHHHHHHHHHhcCCCCcEEEEeccchHH---HhhhccccCCCCccEEecccC--C
Q 012479 176 ISGSDLVLLLISDA-----------AQADNYEKIFSCMKPNSILGLSHGFLLG---HLQSMGLDFPKNIGVIAVCPK--G 239 (462)
Q Consensus 176 v~~ADvViLavpd~-----------a~~~vl~eI~~~Lk~gaiL~~a~G~~i~---~~~~~~i~~p~~v~VV~v~Pn--g 239 (462)
+++||+||+++|.. ...+++++|.+ +++|++|++.+-+... .+.. .+ .+.. +...|- -
T Consensus 71 ~~~ad~vii~Vpt~~~~k~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l~~---~~-~~~~-v~~~PE~l~ 144 (388)
T PRK15057 71 YRDADYVIIATPTDYDPKTNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAAMHK---KY-RTEN-IIFSPEFLR 144 (388)
T ss_pred hcCCCEEEEeCCCCCccCCCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHHHHH---Hh-hcCc-EEECccccc
Confidence 89999999999954 44567788877 6999988765543221 2221 11 1112 333453 3
Q ss_pred CchhhHHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHH--hCCCcc-cccchhhhccccchhhhHhHHhHHHHH
Q 012479 240 MGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA--LGSPFT-FATTLEQEYRSDIFGERGILLGAVHGI 316 (462)
Q Consensus 240 pg~~vr~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~a--iG~~~v-iettf~~E~~~dlfgeqtvL~G~~pal 316 (462)
+|..+.+.+. .+-++. .. +.+..+.+..++.. ++.... +.++. .+-+.-.+-+.+.+ ..--++
T Consensus 145 ~G~a~~d~~~---------p~rvv~-G~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~AE~~Kl~~N~~~-a~~Ia~ 210 (388)
T PRK15057 145 EGKALYDNLH---------PSRIVI-GE--RSERAERFAALLQEGAIKQNIPTLFTDS-TEAEAIKLFANTYL-AMRVAY 210 (388)
T ss_pred CCcccccccC---------CCEEEE-Ec--CcHHHHHHHHHHHhhhhcCCCceeeCCH-HHHHHHHHHHHHHH-HHHHHH
Confidence 3444333332 334332 32 23445556666644 453211 22322 22222223233222 222246
Q ss_pred HHHHHHHHHHcCCCHHHHHH
Q 012479 317 VESLFRRFTENGMNEDLAYK 336 (462)
Q Consensus 317 iea~~d~~v~~G~~~e~A~~ 336 (462)
+.-+...+-+.|++.++...
T Consensus 211 ~NE~a~lae~~GiD~~eV~~ 230 (388)
T PRK15057 211 FNELDSYAESLGLNTRQIIE 230 (388)
T ss_pred HHHHHHHHHHhCcCHHHHHH
Confidence 66677777778888866554
No 122
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=98.46 E-value=3.8e-07 Score=95.43 Aligned_cols=150 Identities=17% Similarity=0.198 Sum_probs=94.4
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
..|+| ++|||||+|+||..+|+.|+.. |++|+++++.... ...... ..+.++++++||+|+++
T Consensus 112 ~~L~g-ktvGIIG~G~IG~~vA~~l~a~------G~~V~~~dp~~~~-----~~~~~~-----~~~L~ell~~sDiI~lh 174 (378)
T PRK15438 112 FSLHD-RTVGIVGVGNVGRRLQARLEAL------GIKTLLCDPPRAD-----RGDEGD-----FRSLDELVQEADILTFH 174 (378)
T ss_pred CCcCC-CEEEEECcCHHHHHHHHHHHHC------CCEEEEECCcccc-----cccccc-----cCCHHHHHhhCCEEEEe
Confidence 36889 9999999999999999999987 9998766532111 111111 45899999999999999
Q ss_pred ecchh-----HHHHHH-HHHhcCCCCcEEEEec-cch------HHHhhhccccCCCCccEEecccCCCchhhHHhhhcCc
Q 012479 186 ISDAA-----QADNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (462)
Q Consensus 186 vpd~a-----~~~vl~-eI~~~Lk~gaiL~~a~-G~~------i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~ 252 (462)
+|-.. ...++. +.+..||+|++|+-++ |-. +..+++ +-....-.||.--.|. +... ++..
T Consensus 175 ~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~-g~~~ga~LDV~e~EP~-~~~~---Ll~~-- 247 (378)
T PRK15438 175 TPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNE-GQKLSVVLDVWEGEPE-LNVE---LLKK-- 247 (378)
T ss_pred CCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHh-CCCcEEEEecCCCCCC-Cchh---hhhc--
Confidence 99544 345665 6888999999988554 421 222222 1111223567767774 2222 3321
Q ss_pred cccCCCceEEEeecc-CCCHHHHH-----HHHHHHHHhCC
Q 012479 253 EINGAGINSSFAVHQ-DVDGRATN-----VALGWSVALGS 286 (462)
Q Consensus 253 ~~~G~Gv~aliav~q-d~tgea~e-----~a~al~~aiG~ 286 (462)
.+ +++||- ..+.+... .+..+..-+|.
T Consensus 248 ------~~-i~TPHiAg~s~e~~~~~~~~~~~~l~~~~~~ 280 (378)
T PRK15438 248 ------VD-IGTPHIAGYTLEGKARGTTQVFEAYSKFIGH 280 (378)
T ss_pred ------CC-EECCccCcCcHHHHHHHHHHHHHHHHHHHcC
Confidence 23 678875 34544444 33445455553
No 123
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=98.42 E-value=8.2e-07 Score=82.78 Aligned_cols=95 Identities=23% Similarity=0.285 Sum_probs=67.6
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
-.+.| |++.|+|||..|..+|+.||.. |.+|+|.... +-..-+|..+||. +.+.+|+++++|+||.+
T Consensus 19 ~~l~G-k~vvV~GYG~vG~g~A~~lr~~------Ga~V~V~e~D-Pi~alqA~~dGf~-----v~~~~~a~~~adi~vta 85 (162)
T PF00670_consen 19 LMLAG-KRVVVIGYGKVGKGIARALRGL------GARVTVTEID-PIRALQAAMDGFE-----VMTLEEALRDADIFVTA 85 (162)
T ss_dssp S--TT-SEEEEE--SHHHHHHHHHHHHT------T-EEEEE-SS-HHHHHHHHHTT-E-----EE-HHHHTTT-SEEEE-
T ss_pred eeeCC-CEEEEeCCCcccHHHHHHHhhC------CCEEEEEECC-hHHHHHhhhcCcE-----ecCHHHHHhhCCEEEEC
Confidence 45778 9999999999999999999998 9999887665 4445667779998 46899999999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEeccch
Q 012479 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~gaiL~~a~G~~ 215 (462)
|-...+. -.+.++.||+|++|..++.|.
T Consensus 86 TG~~~vi--~~e~~~~mkdgail~n~Gh~d 113 (162)
T PF00670_consen 86 TGNKDVI--TGEHFRQMKDGAILANAGHFD 113 (162)
T ss_dssp SSSSSSB---HHHHHHS-TTEEEEESSSST
T ss_pred CCCcccc--CHHHHHHhcCCeEEeccCcCc
Confidence 9875431 125667799999998887774
No 124
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=98.41 E-value=5e-07 Score=94.67 Aligned_cols=139 Identities=17% Similarity=0.149 Sum_probs=91.0
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
..+.| ++|||||+|+||..+|+.|+.. |++|+++++.... . .+... ..+.+|++++||+|+++
T Consensus 112 ~~l~g-ktvGIIG~G~IG~~va~~l~a~------G~~V~~~Dp~~~~-----~-~~~~~----~~~l~ell~~aDiV~lh 174 (381)
T PRK00257 112 VDLAE-RTYGVVGAGHVGGRLVRVLRGL------GWKVLVCDPPRQE-----A-EGDGD----FVSLERILEECDVISLH 174 (381)
T ss_pred CCcCc-CEEEEECCCHHHHHHHHHHHHC------CCEEEEECCcccc-----c-ccCcc----ccCHHHHHhhCCEEEEe
Confidence 46789 9999999999999999999988 9998766543211 1 12121 45899999999999999
Q ss_pred ecchh-----HHHHHH-HHHhcCCCCcEEEEec-cch------HHHhhhccccCCCCccEEecccCCCchhhHHhhhcCc
Q 012479 186 ISDAA-----QADNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGK 252 (462)
Q Consensus 186 vpd~a-----~~~vl~-eI~~~Lk~gaiL~~a~-G~~------i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~ 252 (462)
+|... ...++. +.+..||+|++|+-++ |-. +..+++ +.....-.||..-.|. +.+. +..
T Consensus 175 ~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~-g~i~~a~LDV~e~EP~-~~~~---L~~--- 246 (381)
T PRK00257 175 TPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLS-GEDLDAVLDVWEGEPQ-IDLE---LAD--- 246 (381)
T ss_pred CcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHh-CCCcEEEEeCCCCCCC-CChh---hhh---
Confidence 99653 445665 6888899999887554 421 122222 1111224567766774 2222 222
Q ss_pred cccCCCceEEEeecc-CCCHHHHH
Q 012479 253 EINGAGINSSFAVHQ-DVDGRATN 275 (462)
Q Consensus 253 ~~~G~Gv~aliav~q-d~tgea~e 275 (462)
.+.+++||- ..+.+..+
T Consensus 247 ------~nvi~TPHiAg~s~e~~~ 264 (381)
T PRK00257 247 ------LCTIATPHIAGYSLDGKA 264 (381)
T ss_pred ------CCEEEcCccccCCHHHHH
Confidence 477888886 34555443
No 125
>PLN02306 hydroxypyruvate reductase
Probab=98.41 E-value=9.4e-07 Score=92.75 Aligned_cols=150 Identities=19% Similarity=0.188 Sum_probs=91.5
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHH-HhhhhhcCCcEEEEEecCCchhHHH-HHHcCc-------eecC-CCcCCHhhh
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLR-DSLAEAKSDIVVKVGLRKGSRSFAE-ARAAGF-------TEEN-GTLGDIYET 175 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lr-ds~~~~g~G~~Vivg~r~~~~s~~~-A~~~G~-------~~~d-~~~~~~~ea 175 (462)
..+.| ++|||||+|.+|..+|+.|+ .. |.+|++.++........ ....|. ...+ ....+.+|+
T Consensus 161 ~~L~g-ktvGIiG~G~IG~~vA~~l~~~f------Gm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~el 233 (386)
T PLN02306 161 NLLKG-QTVGVIGAGRIGSAYARMMVEGF------KMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEV 233 (386)
T ss_pred cCCCC-CEEEEECCCHHHHHHHHHHHhcC------CCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHH
Confidence 57999 99999999999999999986 44 88887665542211111 011221 0000 013478999
Q ss_pred hccCCeEEEeecchhH-HHHHH-HHHhcCCCCcEEEEec-cch------HHHhhhccccCCCCccEEecccCCCchhhHH
Q 012479 176 ISGSDLVLLLISDAAQ-ADNYE-KIFSCMKPNSILGLSH-GFL------LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRR 246 (462)
Q Consensus 176 v~~ADvViLavpd~a~-~~vl~-eI~~~Lk~gaiL~~a~-G~~------i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~ 246 (462)
+++||+|++++|-... ..++. +.+..||+|++|+-++ |-. +..+++.. ......||.--.|- +.+ .
T Consensus 234 l~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~-i~gAaLDVf~~EP~-~~~---~ 308 (386)
T PLN02306 234 LREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANP-MFRVGLDVFEDEPY-MKP---G 308 (386)
T ss_pred HhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCC-eeEEEEeCCCCCCC-Ccc---h
Confidence 9999999999995544 45776 6888999999887554 421 22333211 11234677766773 222 2
Q ss_pred hhhcCccccCCCceEEEeecc-CCCHHHHH
Q 012479 247 LYVQGKEINGAGINSSFAVHQ-DVDGRATN 275 (462)
Q Consensus 247 lf~~G~~~~G~Gv~aliav~q-d~tgea~e 275 (462)
++.. -+.+++||- ..+.+..+
T Consensus 309 L~~~--------pNVilTPHiag~T~e~~~ 330 (386)
T PLN02306 309 LADM--------KNAVVVPHIASASKWTRE 330 (386)
T ss_pred HhhC--------CCEEECCccccCcHHHHH
Confidence 3332 377888886 34444443
No 126
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.39 E-value=6.6e-06 Score=81.12 Aligned_cols=146 Identities=20% Similarity=0.176 Sum_probs=106.1
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhh---ccCCeEEEeecc
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI---SGSDLVLLLISD 188 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav---~~ADvViLavpd 188 (462)
|+|+.||+|.||..+.++|.+. |++++ +++.+....+.+..+|... ..+++|.+ ...-+|-+.+|-
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~------ghdvV-~yD~n~~av~~~~~~ga~~----a~sl~el~~~L~~pr~vWlMvPa 69 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDG------GHDVV-GYDVNQTAVEELKDEGATG----AASLDELVAKLSAPRIVWLMVPA 69 (300)
T ss_pred CcceeeccchhhHHHHHHHHhC------CCeEE-EEcCCHHHHHHHHhcCCcc----ccCHHHHHHhcCCCcEEEEEccC
Confidence 6899999999999999999999 99875 5556677788888899764 55666654 456899999998
Q ss_pred h-hHHHHHHHHHhcCCCCcEEEEeccch----HHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEE
Q 012479 189 A-AQADNYEKIFSCMKPNSILGLSHGFL----LGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSF 263 (462)
Q Consensus 189 ~-a~~~vl~eI~~~Lk~gaiL~~a~G~~----i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~ali 263 (462)
. ....++++++|+|.+|.+|++-+--+ +....+ ...++++++-+=-.|-..-.+ +|...
T Consensus 70 g~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~---l~~kgi~flD~GTSGG~~G~~-----------~G~~l-- 133 (300)
T COG1023 70 GDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKL---LAEKGIHFLDVGTSGGVWGAE-----------RGYCL-- 133 (300)
T ss_pred CCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHH---HHhcCCeEEeccCCCCchhhh-----------cCceE--
Confidence 8 44679999999999999998876432 222222 335788888655443211111 23433
Q ss_pred eeccCCCHHHHHHHHHHHHHhCC
Q 012479 264 AVHQDVDGRATNVALGWSVALGS 286 (462)
Q Consensus 264 av~qd~tgea~e~a~al~~aiG~ 286 (462)
-+.. +.++.+...-+|+++--
T Consensus 134 MiGG--~~~a~~~~~pif~~lA~ 154 (300)
T COG1023 134 MIGG--DEEAVERLEPIFKALAP 154 (300)
T ss_pred EecC--cHHHHHHHHHHHHhhCc
Confidence 3344 67999999999999863
No 127
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=98.39 E-value=1.1e-06 Score=88.55 Aligned_cols=95 Identities=19% Similarity=0.283 Sum_probs=72.1
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
..++| ++|+|||+|.+|.++|+.|+.. |.+|++..|+..+ .+.+.+.|.... ...+..+.++++|+||++
T Consensus 147 ~~l~g-k~v~IiG~G~iG~avA~~L~~~------G~~V~v~~R~~~~-~~~~~~~g~~~~--~~~~l~~~l~~aDiVint 216 (287)
T TIGR02853 147 FTIHG-SNVMVLGFGRTGMTIARTFSAL------GARVFVGARSSAD-LARITEMGLIPF--PLNKLEEKVAEIDIVINT 216 (287)
T ss_pred CCCCC-CEEEEEcChHHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHHHCCCeee--cHHHHHHHhccCCEEEEC
Confidence 46789 9999999999999999999988 8898888876433 444555666521 123567889999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEecc
Q 012479 186 ISDAAQADNYEKIFSCMKPNSILGLSHG 213 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~gaiL~~a~G 213 (462)
+|...+. ++..+.|+++.+|++.+.
T Consensus 217 ~P~~ii~---~~~l~~~k~~aliIDlas 241 (287)
T TIGR02853 217 IPALVLT---ADVLSKLPKHAVIIDLAS 241 (287)
T ss_pred CChHHhC---HHHHhcCCCCeEEEEeCc
Confidence 9975321 346677899998887764
No 128
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=98.34 E-value=1.8e-06 Score=92.50 Aligned_cols=120 Identities=20% Similarity=0.219 Sum_probs=86.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
..+.| ++|+|||+|.+|..+|+.++.. |.+|++..+...+ ...|...|+. +.+.+++++.+|+|+++
T Consensus 250 ~~LaG-KtVgVIG~G~IGr~vA~rL~a~------Ga~ViV~e~dp~~-a~~A~~~G~~-----~~~leell~~ADIVI~a 316 (476)
T PTZ00075 250 VMIAG-KTVVVCGYGDVGKGCAQALRGF------GARVVVTEIDPIC-ALQAAMEGYQ-----VVTLEDVVETADIFVTA 316 (476)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchh-HHHHHhcCce-----eccHHHHHhcCCEEEEC
Confidence 46889 9999999999999999999988 8888776654333 3345567886 45789999999999999
Q ss_pred ecchhHHHHHH-HHHhcCCCCcEEEEeccchHHH-hhhccccCCCCccEEecccCCCchh
Q 012479 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGH-LQSMGLDFPKNIGVIAVCPKGMGPS 243 (462)
Q Consensus 186 vpd~a~~~vl~-eI~~~Lk~gaiL~~a~G~~i~~-~~~~~i~~p~~v~VV~v~Pngpg~~ 243 (462)
+.. ..++. +....||+|++|+.++-+.... +.. +....++++..+.|+.....
T Consensus 317 tGt---~~iI~~e~~~~MKpGAiLINvGr~d~Ei~i~a--L~~~~~vdv~evep~v~~~~ 371 (476)
T PTZ00075 317 TGN---KDIITLEHMRRMKNNAIVGNIGHFDNEIQVAE--LEAYPGIEIVEIKPQVDRYT 371 (476)
T ss_pred CCc---ccccCHHHHhccCCCcEEEEcCCCchHHhHHH--HHhcCCceeecccCCCCeEE
Confidence 753 44665 6888899999988665443111 110 11112577888888765444
No 129
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=98.33 E-value=2.3e-05 Score=84.35 Aligned_cols=200 Identities=13% Similarity=0.078 Sum_probs=116.4
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcC-------------------ceecCCCcCC
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-------------------FTEENGTLGD 171 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G-------------------~~~~d~~~~~ 171 (462)
+|||+|||+|.+|..+|..|.+. |.|++|+ +.+.++...+.-.+.+ +.. +.+
T Consensus 1 ~m~I~ViG~GyvGl~~A~~lA~~----g~g~~V~-gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~----t~~ 71 (473)
T PLN02353 1 MVKICCIGAGYVGGPTMAVIALK----CPDIEVV-VVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFF----STD 71 (473)
T ss_pred CCEEEEECCCHHHHHHHHHHHhc----CCCCeEE-EEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEE----EcC
Confidence 48999999999999999999877 2246665 4444443333321111 111 345
Q ss_pred HhhhhccCCeEEEeec-ch--------------hHHHHHHHHHhcCCCCcEEEEec----cchHHHhhhccccCCCCcc-
Q 012479 172 IYETISGSDLVLLLIS-DA--------------AQADNYEKIFSCMKPNSILGLSH----GFLLGHLQSMGLDFPKNIG- 231 (462)
Q Consensus 172 ~~eav~~ADvViLavp-d~--------------a~~~vl~eI~~~Lk~gaiL~~a~----G~~i~~~~~~~i~~p~~v~- 231 (462)
..+++++||++|+||| |. .+..+.++|.+++++|++|+.-+ |..- .+......-.++.+
T Consensus 72 ~~~~i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~-~~~~~l~~~~~g~~f 150 (473)
T PLN02353 72 VEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAE-AIEKILTHNSKGINF 150 (473)
T ss_pred HHHHHhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHH-HHHHHHHhhCCCCCe
Confidence 6788999999999996 22 34567778999999999876443 4431 11110000011233
Q ss_pred EEecccC--CCchhhHHhhhcCccccCCCceEEE-eeccC-CCHHHHHHHHHHHHHhCC-Ccccccchhhhccccchhhh
Q 012479 232 VIAVCPK--GMGPSVRRLYVQGKEINGAGINSSF-AVHQD-VDGRATNVALGWSVALGS-PFTFATTLEQEYRSDIFGER 306 (462)
Q Consensus 232 VV~v~Pn--gpg~~vr~lf~~G~~~~G~Gv~ali-av~qd-~tgea~e~a~al~~aiG~-~~viettf~~E~~~dlfgeq 306 (462)
.|...|- .||..+++++. .+-++ ....+ ...++.+.++++...+-. ..++.|+. ++-+.-.+
T Consensus 151 ~v~~~PErl~~G~a~~d~~~---------p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~-~~AE~~K~--- 217 (473)
T PLN02353 151 QILSNPEFLAEGTAIEDLFK---------PDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNL-WSAELSKL--- 217 (473)
T ss_pred EEEECCCccCCCCcccccCC---------CCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCH-HHHHHHHH---
Confidence 3556664 56777665554 45543 22212 225678888888888742 23444443 33333222
Q ss_pred HhHHhHHH----HHHHHHHHHHHHcCCCHHHHH
Q 012479 307 GILLGAVH----GIVESLFRRFTENGMNEDLAY 335 (462)
Q Consensus 307 tvL~G~~p----aliea~~d~~v~~G~~~e~A~ 335 (462)
..++.- +|+..+.+.+-+.|++..+..
T Consensus 218 --~eN~~ra~~Iaf~NEla~lce~~giD~~eV~ 248 (473)
T PLN02353 218 --AANAFLAQRISSVNAMSALCEATGADVSQVS 248 (473)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 233333 477777777777787775544
No 130
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=98.27 E-value=4.2e-06 Score=83.30 Aligned_cols=92 Identities=17% Similarity=0.190 Sum_probs=63.4
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCc-hhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecch
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~-~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~ 189 (462)
|+||||||+|.||..++.+|.+. +.+++++...+.+. +..+.+...|... +.+.+++++++|+|++|+|++
T Consensus 1 mmrIgIIG~G~iG~~ia~~l~~~----~~~~elv~v~d~~~~~a~~~a~~~~~~~----~~~~~ell~~~DvVvi~a~~~ 72 (265)
T PRK13304 1 MLKIGIVGCGAIASLITKAILSG----RINAELYAFYDRNLEKAENLASKTGAKA----CLSIDELVEDVDLVVECASVN 72 (265)
T ss_pred CCEEEEECccHHHHHHHHHHHcC----CCCeEEEEEECCCHHHHHHHHHhcCCee----ECCHHHHhcCCCEEEEcCChH
Confidence 47999999999999999999875 11245443344433 3333444455543 568888889999999999999
Q ss_pred hHHHHHHHHHhcCCCCc-EEEEecc
Q 012479 190 AQADNYEKIFSCMKPNS-ILGLSHG 213 (462)
Q Consensus 190 a~~~vl~eI~~~Lk~ga-iL~~a~G 213 (462)
.+.++..++.. .|+ +++.+.|
T Consensus 73 ~~~~~~~~al~---~Gk~Vvv~s~g 94 (265)
T PRK13304 73 AVEEVVPKSLE---NGKDVIIMSVG 94 (265)
T ss_pred HHHHHHHHHHH---cCCCEEEEchH
Confidence 99888776544 344 4444443
No 131
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=98.25 E-value=3.4e-06 Score=79.89 Aligned_cols=93 Identities=23% Similarity=0.317 Sum_probs=59.7
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecC--------------C---CcCCHhh
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN--------------G---TLGDIYE 174 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d--------------~---~~~~~~e 174 (462)
|||+|||+|-+|..+|..|.++ |++|+ |.+.+++..+.. ..|...-. + ...+..+
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~------G~~V~-g~D~~~~~v~~l-~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ 72 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEK------GHQVI-GVDIDEEKVEAL-NNGELPIYEPGLDELLKENVSAGRLRATTDIEE 72 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHT------TSEEE-EE-S-HHHHHHH-HTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHH
T ss_pred CEEEEECCCcchHHHHHHHHhC------CCEEE-EEeCChHHHHHH-hhccccccccchhhhhccccccccchhhhhhhh
Confidence 7999999999999999999999 99874 666655433332 22321100 0 1456788
Q ss_pred hhccCCeEEEeecch----------hHHHHHHHHHhcCCCCcEEEEec
Q 012479 175 TISGSDLVLLLISDA----------AQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 175 av~~ADvViLavpd~----------a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++++||++|+|+|.. ....++++|.++++++++|++-+
T Consensus 73 ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~S 120 (185)
T PF03721_consen 73 AIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIES 120 (185)
T ss_dssp HHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESS
T ss_pred hhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEcc
Confidence 899999999999832 23557778999999999887655
No 132
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=98.24 E-value=6e-06 Score=87.26 Aligned_cols=93 Identities=24% Similarity=0.235 Sum_probs=74.6
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEee
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
.+.| ++|+|||+|.+|..+|+.++.. |.+|++..+...+ ...|...|+. +.+.+++++++|+||.++
T Consensus 192 ~l~G-k~VvViG~G~IG~~vA~~ak~~------Ga~ViV~d~dp~r-~~~A~~~G~~-----v~~leeal~~aDVVItaT 258 (406)
T TIGR00936 192 LIAG-KTVVVAGYGWCGKGIAMRARGM------GARVIVTEVDPIR-ALEAAMDGFR-----VMTMEEAAKIGDIFITAT 258 (406)
T ss_pred CCCc-CEEEEECCCHHHHHHHHHHhhC------cCEEEEEeCChhh-HHHHHhcCCE-----eCCHHHHHhcCCEEEECC
Confidence 4788 9999999999999999999988 8898876654433 5667778986 456788999999999988
Q ss_pred cchhHHHHHH-HHHhcCCCCcEEEEeccch
Q 012479 187 SDAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (462)
Q Consensus 187 pd~a~~~vl~-eI~~~Lk~gaiL~~a~G~~ 215 (462)
.. ..++. +....||+|.+|+.++.+.
T Consensus 259 G~---~~vI~~~~~~~mK~GailiN~G~~~ 285 (406)
T TIGR00936 259 GN---KDVIRGEHFENMKDGAIVANIGHFD 285 (406)
T ss_pred CC---HHHHHHHHHhcCCCCcEEEEECCCC
Confidence 64 45565 5788899999988776553
No 133
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=98.20 E-value=6.4e-05 Score=76.71 Aligned_cols=154 Identities=19% Similarity=0.245 Sum_probs=98.9
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCC--------cCCHhhhhccCCeEE
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT--------LGDIYETISGSDLVL 183 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~--------~~~~~eav~~ADvVi 183 (462)
|||.|||.|.||.-++..|.+. |.+|.+..|. +..+.-++.|....+.. ..+..+....+|+||
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~------g~~V~~~~R~--~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlvi 72 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKA------GHDVTLLVRS--RRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVI 72 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhC------CCeEEEEecH--HHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEE
Confidence 6899999999999999999999 8667666664 33566666687543211 112235566899999
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEE-EEeccch-HHHhhhccccCCCCccEEe-ccc-----CCCchhhHHhhhcCcccc
Q 012479 184 LLISDAAQADNYEKIFSCMKPNSIL-GLSHGFL-LGHLQSMGLDFPKNIGVIA-VCP-----KGMGPSVRRLYVQGKEIN 255 (462)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~gaiL-~~a~G~~-i~~~~~~~i~~p~~v~VV~-v~P-----ngpg~~vr~lf~~G~~~~ 255 (462)
++++-.+..++++.+.|++++.+.| .+--|.. .+.+.+ .+|.. ++++ +.+ ++|+++. +.
T Consensus 73 v~vKa~q~~~al~~l~~~~~~~t~vl~lqNG~g~~e~l~~---~~~~~-~il~G~~~~~a~~~~~g~v~---~~------ 139 (307)
T COG1893 73 VTVKAYQLEEALPSLAPLLGPNTVVLFLQNGLGHEEELRK---ILPKE-TVLGGVTTHGAVREGPGHVV---HT------ 139 (307)
T ss_pred EEeccccHHHHHHHhhhcCCCCcEEEEEeCCCcHHHHHHH---hCCcc-eEEEEEeeeeeEecCCceEE---Ee------
Confidence 9999999999999999999999854 4556775 333333 44444 3332 333 4555552 11
Q ss_pred CCCceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 256 GAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 256 G~Gv~aliav~qd~tgea~e~a~al~~aiG~~ 287 (462)
|.|... +........+..+...+.|+..|..
T Consensus 140 g~g~~~-ig~~~~~~~~~~~~i~~~~~~a~~~ 170 (307)
T COG1893 140 GLGDTV-IGELRGGRDELVKALAELFKEAGLE 170 (307)
T ss_pred cCCcEE-EccCCCCchHHHHHHHHHHHhCCCC
Confidence 234555 3322222224555555666777754
No 134
>COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=98.19 E-value=0.00014 Score=71.24 Aligned_cols=199 Identities=17% Similarity=0.198 Sum_probs=136.5
Q ss_pred HHcCceecCCCcCCHhhhhccCCeEEEeecc-hhHHHHHHHHHhcCCCCcEEEEeccchHH-H---hhhccccCCCCccE
Q 012479 158 RAAGFTEENGTLGDIYETISGSDLVLLLISD-AAQADNYEKIFSCMKPNSILGLSHGFLLG-H---LQSMGLDFPKNIGV 232 (462)
Q Consensus 158 ~~~G~~~~d~~~~~~~eav~~ADvViLavpd-~a~~~vl~eI~~~Lk~gaiL~~a~G~~i~-~---~~~~~i~~p~~v~V 232 (462)
++.|+.+ +.|..|++++||+||-=.|- ..|.++++++.+.+++|++|+.++-+... + ++. .=+++.+|
T Consensus 123 ed~g~~v----ttddreavedad~iitwlpkg~~qpdiikkfiddipegaivthactipttkf~kifed---~gredlnv 195 (343)
T COG4074 123 EDMGIVV----TTDDREAVEDADMIITWLPKGGVQPDIIKKFIDDIPEGAIVTHACTIPTTKFKKIFED---MGREDLNV 195 (343)
T ss_pred HHceeEE----ecCcHhhhcCCCeEEEeccCCCCCccHHHHHHhcCCCCceEeeecccchHHHHHHHHH---hCccccce
Confidence 3467776 57888999999999998884 56789999999999999999988865321 1 121 12478899
Q ss_pred EecccCCCchhhHHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhH
Q 012479 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGA 312 (462)
Q Consensus 233 V~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~ 312 (462)
-..||-+ .+.. +|-.+ |+ +.-+++++++..-++.+.--+. .+. ....|.|-.+-.|..
T Consensus 196 tsyhpg~-vpem------------kgqvy-ia-egyaseeavn~lyelg~karg~-afk------~pa~llgpvcdmcsa 253 (343)
T COG4074 196 TSYHPGT-VPEM------------KGQVY-IA-EGYASEEAVNALYELGEKARGL-AFK------VPAYLLGPVCDMCSA 253 (343)
T ss_pred eccCCCC-Cccc------------cCcEE-Ee-cccccHHHHHHHHHHHHHhhcc-ccc------CcHHhhchHHHHHHH
Confidence 9999954 3331 34444 44 6678888888776665433221 111 123377888888888
Q ss_pred HHHHHHHHHHHH---H--HcCCCHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHhcCCcchhhhchhhccCchhHHHHHHH
Q 012479 313 VHGIVESLFRRF---T--ENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYE 387 (462)
Q Consensus 313 ~paliea~~d~~---v--~~G~~~e~A~~~~~e~i~Gli~~li~e~G~~~m~~~vs~~~~aeyg~~~~~~~~~~~~~m~e 387 (462)
+.+++-|+.-.+ | -.|-|-+.|...+.|.+.+ |++++.+.|++.|-+.+.. .+-.|..-+-.+-|..+++-.
T Consensus 254 vtaivyagll~yrdavt~ilgapadfaqmma~eal~q-i~~lmee~gidkmeealdp--aallgtadsmnfgpladilpt 330 (343)
T COG4074 254 VTAIVYAGLLTYRDAVTDILGAPADFAQMMAVEALQQ-IAKLMEEEGIDKMEEALDP--AALLGTADSMNFGPLADILPT 330 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH-HHHHHHHhhhhHHHhhcCH--HHhhCccccccccchHHHhHH
Confidence 887665554333 2 2499999999999999996 9999999999999999874 333443333334454444444
Q ss_pred H
Q 012479 388 C 388 (462)
Q Consensus 388 ~ 388 (462)
.
T Consensus 331 a 331 (343)
T COG4074 331 A 331 (343)
T ss_pred H
Confidence 3
No 135
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=98.18 E-value=8.7e-06 Score=81.49 Aligned_cols=92 Identities=18% Similarity=0.218 Sum_probs=64.6
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEE-EEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchh
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vi-vg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a 190 (462)
+||||||+|.||..++++|.+.. .++++. ++++..++..+.+.+.|... ...+.+++++++|+|++++|+..
T Consensus 7 irIGIIG~G~IG~~~a~~L~~~~----~~~el~aV~dr~~~~a~~~a~~~g~~~---~~~~~eell~~~D~Vvi~tp~~~ 79 (271)
T PRK13302 7 LRVAIAGLGAIGKAIAQALDRGL----PGLTLSAVAVRDPQRHADFIWGLRRPP---PVVPLDQLATHADIVVEAAPASV 79 (271)
T ss_pred eEEEEECccHHHHHHHHHHHhcC----CCeEEEEEECCCHHHHHHHHHhcCCCc---ccCCHHHHhcCCCEEEECCCcHH
Confidence 78999999999999999998620 156655 34444344445556666421 15688999999999999999999
Q ss_pred HHHHHHHHHhcCCCCc-EEEEecc
Q 012479 191 QADNYEKIFSCMKPNS-ILGLSHG 213 (462)
Q Consensus 191 ~~~vl~eI~~~Lk~ga-iL~~a~G 213 (462)
+.++..+.. +.|+ +++.+.|
T Consensus 80 h~e~~~~aL---~aGk~Vi~~s~g 100 (271)
T PRK13302 80 LRAIVEPVL---AAGKKAIVLSVG 100 (271)
T ss_pred HHHHHHHHH---HcCCcEEEecch
Confidence 988876654 4565 4444434
No 136
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=98.17 E-value=8.9e-06 Score=82.38 Aligned_cols=94 Identities=22% Similarity=0.357 Sum_probs=72.8
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
..+.| +|++|||+|.+|.+++..|+.. |.+|++..|+.. ..+.++..|.... ...+..+.++++|+||.+
T Consensus 148 ~~l~g-~kvlViG~G~iG~~~a~~L~~~------Ga~V~v~~r~~~-~~~~~~~~G~~~~--~~~~l~~~l~~aDiVI~t 217 (296)
T PRK08306 148 ITIHG-SNVLVLGFGRTGMTLARTLKAL------GANVTVGARKSA-HLARITEMGLSPF--HLSELAEEVGKIDIIFNT 217 (296)
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEECCHH-HHHHHHHcCCeee--cHHHHHHHhCCCCEEEEC
Confidence 45678 9999999999999999999988 888888877643 3566777787531 123567889999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
+|+.. +-++....|+++.+|++.+
T Consensus 218 ~p~~~---i~~~~l~~~~~g~vIIDla 241 (296)
T PRK08306 218 IPALV---LTKEVLSKMPPEALIIDLA 241 (296)
T ss_pred CChhh---hhHHHHHcCCCCcEEEEEc
Confidence 98643 2245677899999988775
No 137
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=98.16 E-value=1e-05 Score=85.97 Aligned_cols=93 Identities=24% Similarity=0.235 Sum_probs=74.6
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEee
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
.+.| ++|+|||+|.+|..+|+.++.. |.+|++..+...+ ...+...|+. +.+.+++++.+|+||.++
T Consensus 209 ~l~G-k~VlViG~G~IG~~vA~~lr~~------Ga~ViV~d~dp~r-a~~A~~~G~~-----v~~l~eal~~aDVVI~aT 275 (425)
T PRK05476 209 LIAG-KVVVVAGYGDVGKGCAQRLRGL------GARVIVTEVDPIC-ALQAAMDGFR-----VMTMEEAAELGDIFVTAT 275 (425)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCCchh-hHHHHhcCCE-----ecCHHHHHhCCCEEEECC
Confidence 3688 9999999999999999999988 9898887665444 4555667886 457889999999999998
Q ss_pred cchhHHHHHH-HHHhcCCCCcEEEEeccch
Q 012479 187 SDAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (462)
Q Consensus 187 pd~a~~~vl~-eI~~~Lk~gaiL~~a~G~~ 215 (462)
.. ..++. +....||+|.+++.++.+.
T Consensus 276 G~---~~vI~~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 276 GN---KDVITAEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred CC---HHHHHHHHHhcCCCCCEEEEcCCCC
Confidence 54 34565 6788899999988877664
No 138
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=98.16 E-value=2.5e-05 Score=81.70 Aligned_cols=182 Identities=17% Similarity=0.191 Sum_probs=122.7
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcC----ceecCCCcCCHhhh---hccCCeEEE
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG----FTEENGTLGDIYET---ISGSDLVLL 184 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G----~~~~d~~~~~~~ea---v~~ADvViL 184 (462)
..||+||+|.||..+|+|+.+. |+.|.|.+|..+++.+.-++.+ ++. ..+++|. ++.---|+|
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~------G~~VavyNRt~~ktd~f~~~~~~~k~i~~----~~sieefV~~Le~PRkI~l 73 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADH------GYTVAVYNRTTEKTDEFLAERAKGKNIVP----AYSIEEFVASLEKPRKILL 73 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhc------CceEEEEeCCHHHHHHHHHhCccCCCccc----cCcHHHHHHHhcCCceEEE
Confidence 4799999999999999999999 9999999999888776666654 232 4567764 567788999
Q ss_pred eecchh-HHHHHHHHHhcCCCCcEEEEeccc----hHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCc
Q 012479 185 LISDAA-QADNYEKIFSCMKPNSILGLSHGF----LLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGI 259 (462)
Q Consensus 185 avpd~a-~~~vl~eI~~~Lk~gaiL~~a~G~----~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv 259 (462)
.|+-.. +..++++++|+|.+|.+|+|-+-- ++....+ .-.+++.||+.==.| |. +|.
T Consensus 74 MVkAG~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~e---L~~~Gi~FvG~GVSG-GE--------------eGA 135 (473)
T COG0362 74 MVKAGTPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKE---LSEKGILFVGMGVSG-GE--------------EGA 135 (473)
T ss_pred EEecCCcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHH---HHhcCCeEEeccccc-cc--------------ccc
Confidence 998753 456889999999999999987643 2333222 235688898633222 11 122
Q ss_pred ---eEEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHH--------------HHHHHHHH
Q 012479 260 ---NSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVH--------------GIVESLFR 322 (462)
Q Consensus 260 ---~aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~p--------------aliea~~d 322 (462)
|+ |-|.. +.++.+.+.-++..|-+.. ..+--.+..|+. |.+| .+|--.|+
T Consensus 136 ~~GPS-iMpGG--~~eay~~v~pil~~IaAk~------~g~pCc~~iG~~----GAGHfVKmVHNGIEYgDMQlIaE~Y~ 202 (473)
T COG0362 136 RHGPS-IMPGG--QKEAYELVAPILTKIAAKV------DGEPCCTWIGPD----GAGHFVKMVHNGIEYGDMQLIAEAYD 202 (473)
T ss_pred ccCCC-cCCCC--CHHHHHHHHHHHHHHHhhc------CCCCceeeECCC----CCCceeeeeecCchHHHHHHHHHHHH
Confidence 33 33444 7889999999999997641 011111222222 3333 16666677
Q ss_pred HHHH-cCCCHHHH
Q 012479 323 RFTE-NGMNEDLA 334 (462)
Q Consensus 323 ~~v~-~G~~~e~A 334 (462)
-+.. .|++.++-
T Consensus 203 ilk~~lgls~~ei 215 (473)
T COG0362 203 ILKDGLGLSAEEI 215 (473)
T ss_pred HHHHhcCCCHHHH
Confidence 7776 68887754
No 139
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=98.12 E-value=7.8e-06 Score=83.20 Aligned_cols=76 Identities=18% Similarity=0.210 Sum_probs=61.1
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..++| |+|+|||.| .||..+|.+|.+. |..|.++.+.. .++.+++++||+||.
T Consensus 155 i~l~G-k~V~vIG~s~ivG~PmA~~L~~~------gatVtv~~~~t-------------------~~l~e~~~~ADIVIs 208 (301)
T PRK14194 155 GDLTG-KHAVVIGRSNIVGKPMAALLLQA------HCSVTVVHSRS-------------------TDAKALCRQADIVVA 208 (301)
T ss_pred CCCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEECCCC-------------------CCHHHHHhcCCEEEE
Confidence 46899 999999996 9999999999999 99988875431 257788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
+++.... ++. ..+++|++|++++
T Consensus 209 avg~~~~---v~~--~~ik~GaiVIDvg 231 (301)
T PRK14194 209 AVGRPRL---IDA--DWLKPGAVVIDVG 231 (301)
T ss_pred ecCChhc---ccH--hhccCCcEEEEec
Confidence 9997643 221 1289999888873
No 140
>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=98.10 E-value=0.00036 Score=71.37 Aligned_cols=207 Identities=13% Similarity=0.069 Sum_probs=130.2
Q ss_pred hHHHHHHHHHHhhhhhcCCcEEEEEecCCch-----------------hHHHHHHcCceecC-------C--CcC--CHh
Q 012479 122 QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-----------------SFAEARAAGFTEEN-------G--TLG--DIY 173 (462)
Q Consensus 122 mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~-----------------s~~~A~~~G~~~~d-------~--~~~--~~~ 173 (462)
||..||..+..+ |++|++.+...+. .++.+.+.|..... . .+. +..
T Consensus 1 MG~giA~~~a~~------G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~ 74 (314)
T PRK08269 1 MGQGIALAFAFA------GHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAA 74 (314)
T ss_pred CcHHHHHHHHhC------CCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchH
Confidence 799999999988 9999888766421 11222233322100 0 011 256
Q ss_pred hhhccCCeEEEeecchhHH--HHHHHHHhcCCCCcEEE-EeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhc
Q 012479 174 ETISGSDLVLLLISDAAQA--DNYEKIFSCMKPNSILG-LSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQ 250 (462)
Q Consensus 174 eav~~ADvViLavpd~a~~--~vl~eI~~~Lk~gaiL~-~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~ 250 (462)
+++++||+||-++|..... .++.+|.+.++++++|. -++++.+..+.. ..+..-+++.+|+--|.+..+
T Consensus 75 ~a~~~aD~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~~~~~~la~---~~~~p~r~~g~Hf~~Pp~~~~----- 146 (314)
T PRK08269 75 DALADADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTSTFLVTDLQR---HVAHPERFLNAHWLNPAYLMP----- 146 (314)
T ss_pred HHhccCCEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEccccCCHHHHHh---hcCCcccEEEEecCCccccCc-----
Confidence 8899999999999977664 58889999999999874 555666655554 222224799999988876621
Q ss_pred CccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHHHHHHHHHHHHHcCCC
Q 012479 251 GKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMN 330 (462)
Q Consensus 251 G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~paliea~~d~~v~~G~~ 330 (462)
.-= +..+...+.+.++.+..++..+|.. ++.. .+.. .+ ++......++.-.+..+-+.|.+
T Consensus 147 --------lvE-Vv~g~~t~~e~~~~~~~ll~~lGk~-~v~v---~d~~-----Gf-i~nri~~~~l~EAl~l~e~g~~~ 207 (314)
T PRK08269 147 --------LVE-VSPSDATDPAVVDRLAALLERIGKV-PVVC---GPSP-----GY-IVPRIQALAMNEAARMVEEGVAS 207 (314)
T ss_pred --------eEE-EeCCCCCCHHHHHHHHHHHHHcCCc-EEEe---cCCC-----Cc-chHHHHHHHHHHHHHHHHhCCCC
Confidence 111 4456788899999999999999975 2211 1211 11 34444444444444555666789
Q ss_pred HHHHHHHHHHHH------HHHHHHHHHHhcHHHHHHhc
Q 012479 331 EDLAYKNTVECI------TGIISKIISTQGMLAVYNSF 362 (462)
Q Consensus 331 ~e~A~~~~~e~i------~Gli~~li~e~G~~~m~~~v 362 (462)
+++......... .| .-+++-..|+..+++..
T Consensus 208 ~e~iD~a~~~g~G~~~~~~G-pf~~~D~~Gld~~~~~~ 244 (314)
T PRK08269 208 AEDIDKAIRTGFGLRFAVLG-LLEFIDWGGCDILYYAS 244 (314)
T ss_pred HHHHHHHHHhCCCCCccCcC-HHHHHHhhhHHHHHHHH
Confidence 988776443221 25 45566667776555543
No 141
>PLN02494 adenosylhomocysteinase
Probab=98.10 E-value=1.5e-05 Score=85.59 Aligned_cols=92 Identities=18% Similarity=0.210 Sum_probs=71.8
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEee
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
-+.| ++|+|||+|.+|..+|+.++.. |.+|++..+. +.....|...|+.. .+.+++++.+|+|+.++
T Consensus 251 ~LaG-KtVvViGyG~IGr~vA~~aka~------Ga~VIV~e~d-p~r~~eA~~~G~~v-----v~leEal~~ADVVI~tT 317 (477)
T PLN02494 251 MIAG-KVAVICGYGDVGKGCAAAMKAA------GARVIVTEID-PICALQALMEGYQV-----LTLEDVVSEADIFVTTT 317 (477)
T ss_pred ccCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCC-chhhHHHHhcCCee-----ccHHHHHhhCCEEEECC
Confidence 3788 9999999999999999999987 8888776554 32334677788873 47889999999999876
Q ss_pred cchhHHHHH-HHHHhcCCCCcEEEEeccc
Q 012479 187 SDAAQADNY-EKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 187 pd~a~~~vl-~eI~~~Lk~gaiL~~a~G~ 214 (462)
... .++ .+.+..||+|.+|+.++-+
T Consensus 318 Gt~---~vI~~e~L~~MK~GAiLiNvGr~ 343 (477)
T PLN02494 318 GNK---DIIMVDHMRKMKNNAIVCNIGHF 343 (477)
T ss_pred CCc---cchHHHHHhcCCCCCEEEEcCCC
Confidence 643 333 5677889999998866554
No 142
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=98.10 E-value=2.6e-05 Score=67.05 Aligned_cols=81 Identities=25% Similarity=0.286 Sum_probs=62.5
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCc-hhHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeecc
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~-~s~~~A~~~G~~~~d~~~~~~~eav~--~ADvViLavpd 188 (462)
.+|+|||+|.+|..+...+++.. .+.+++...+.+. +....+++.|+.. ..+.+++++ +.|+|++++|+
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~----~~~~v~~v~d~~~~~~~~~~~~~~~~~----~~~~~~ll~~~~~D~V~I~tp~ 72 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSS----PDFEVVAVCDPDPERAEAFAEKYGIPV----YTDLEELLADEDVDAVIIATPP 72 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTT----TTEEEEEEECSSHHHHHHHHHHTTSEE----ESSHHHHHHHTTESEEEEESSG
T ss_pred CEEEEECCcHHHHHHHHHHHhcC----CCcEEEEEEeCCHHHHHHHHHHhcccc----hhHHHHHHHhhcCCEEEEecCC
Confidence 37999999999999999998761 1456554445544 3344467788875 788999887 78999999999
Q ss_pred hhHHHHHHHHHh
Q 012479 189 AAQADNYEKIFS 200 (462)
Q Consensus 189 ~a~~~vl~eI~~ 200 (462)
..+.++..+...
T Consensus 73 ~~h~~~~~~~l~ 84 (120)
T PF01408_consen 73 SSHAEIAKKALE 84 (120)
T ss_dssp GGHHHHHHHHHH
T ss_pred cchHHHHHHHHH
Confidence 999998887654
No 143
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=98.08 E-value=2.2e-05 Score=83.24 Aligned_cols=93 Identities=23% Similarity=0.261 Sum_probs=74.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
..+.| ++|+|||+|.+|..+++.++.. |.+|++..+. +.....|...|+. ..+.+++++.+|+||.+
T Consensus 198 ~~l~G-ktVvViG~G~IG~~va~~ak~~------Ga~ViV~d~d-~~R~~~A~~~G~~-----~~~~~e~v~~aDVVI~a 264 (413)
T cd00401 198 VMIAG-KVAVVAGYGDVGKGCAQSLRGQ------GARVIVTEVD-PICALQAAMEGYE-----VMTMEEAVKEGDIFVTT 264 (413)
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEECC-hhhHHHHHhcCCE-----EccHHHHHcCCCEEEEC
Confidence 34788 9999999999999999999988 8888775544 4557888899986 34667889999999999
Q ss_pred ecchhHHHHHH-HHHhcCCCCcEEEEeccc
Q 012479 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 186 vpd~a~~~vl~-eI~~~Lk~gaiL~~a~G~ 214 (462)
+... .++. +....+++|.+|+.++.+
T Consensus 265 tG~~---~~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 265 TGNK---DIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred CCCH---HHHHHHHHhcCCCCcEEEEeCCC
Confidence 8643 3555 467889999988766644
No 144
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=98.01 E-value=2.4e-05 Score=70.12 Aligned_cols=94 Identities=19% Similarity=0.264 Sum_probs=70.6
Q ss_pred EEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCC----------cCCHhhhhccCCeEE
Q 012479 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGT----------LGDIYETISGSDLVL 183 (462)
Q Consensus 114 IgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~----------~~~~~eav~~ADvVi 183 (462)
|+|||.|+||.-+|-.|.+. |.+|.+..|.. ..+.-++.|+...+.. ..+..+..+..|+||
T Consensus 1 I~I~G~GaiG~~~a~~L~~~------g~~V~l~~r~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi 72 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA------GHDVTLVSRSP--RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVI 72 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT------TCEEEEEESHH--HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEE
T ss_pred CEEECcCHHHHHHHHHHHHC------CCceEEEEccc--cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEE
Confidence 78999999999999999988 99988777653 3455566777542111 111123567899999
Q ss_pred EeecchhHHHHHHHHHhcCCCCcE-EEEeccch
Q 012479 184 LLISDAAQADNYEKIFSCMKPNSI-LGLSHGFL 215 (462)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~gai-L~~a~G~~ 215 (462)
+++|-.+..++++.+++++.+++. |++--|+.
T Consensus 73 v~vKa~~~~~~l~~l~~~~~~~t~iv~~qNG~g 105 (151)
T PF02558_consen 73 VAVKAYQLEQALQSLKPYLDPNTTIVSLQNGMG 105 (151)
T ss_dssp E-SSGGGHHHHHHHHCTGEETTEEEEEESSSSS
T ss_pred EEecccchHHHHHHHhhccCCCcEEEEEeCCCC
Confidence 999999999999999999999865 55666875
No 145
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=98.01 E-value=2.3e-05 Score=79.69 Aligned_cols=96 Identities=19% Similarity=0.216 Sum_probs=69.2
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCC-cEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEee
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G-~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
+.| ++|+|||+|.||..+++.|+.. | .+|++.+|...+..+.|.+.|.... ...+..+++.++|+||.+|
T Consensus 176 l~~-~~V~ViGaG~iG~~~a~~L~~~------g~~~V~v~~r~~~ra~~la~~~g~~~~--~~~~~~~~l~~aDvVi~at 246 (311)
T cd05213 176 LKG-KKVLVIGAGEMGELAAKHLAAK------GVAEITIANRTYERAEELAKELGGNAV--PLDELLELLNEADVVISAT 246 (311)
T ss_pred ccC-CEEEEECcHHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHcCCeEE--eHHHHHHHHhcCCEEEECC
Confidence 678 9999999999999999999986 5 4677777776666677888776421 0234567889999999999
Q ss_pred cchhHHHHHHHHHhcC-CCCcEEEEec
Q 012479 187 SDAAQADNYEKIFSCM-KPNSILGLSH 212 (462)
Q Consensus 187 pd~a~~~vl~eI~~~L-k~gaiL~~a~ 212 (462)
|.....++++.+.... +++.++++.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~viDla 273 (311)
T cd05213 247 GAPHYAKIVERAMKKRSGKPRLIVDLA 273 (311)
T ss_pred CCCchHHHHHHHHhhCCCCCeEEEEeC
Confidence 9776655555543322 2455666554
No 146
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=97.93 E-value=3.6e-05 Score=67.19 Aligned_cols=97 Identities=12% Similarity=0.032 Sum_probs=60.7
Q ss_pred EEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEE-ecCCchhHHHHHHcC-ceecCCCcCCHhhh-hccCCeEEEeecc
Q 012479 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVG-LRKGSRSFAEARAAG-FTEENGTLGDIYET-ISGSDLVLLLISD 188 (462)
Q Consensus 113 kIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg-~r~~~~s~~~A~~~G-~~~~d~~~~~~~ea-v~~ADvViLavpd 188 (462)
||+||| .|.+|..++..|.+. .++++... .++.+.....+...+ +....-...+..+. ..++|+||+++|+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~-----~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~ 75 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEH-----PDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPH 75 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcC-----CCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCc
Confidence 689999 589999999999884 04554333 222211111122222 11000000111111 2589999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 189 AAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 189 ~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
..+.+++..+.+.+++|++|++++|.
T Consensus 76 ~~~~~~~~~~~~~~~~g~~viD~s~~ 101 (122)
T smart00859 76 GVSKEIAPLLPKAAEAGVKVIDLSSA 101 (122)
T ss_pred HHHHHHHHHHHhhhcCCCEEEECCcc
Confidence 99999888767778999999999886
No 147
>PRK06141 ornithine cyclodeaminase; Validated
Probab=97.90 E-value=2.7e-05 Score=79.40 Aligned_cols=87 Identities=18% Similarity=0.155 Sum_probs=62.3
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCC-cEEEEEecCCchhHHHHHHc---C--ceecCCCcCCHhhhhccCCeEEEe
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAA---G--FTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G-~~Vivg~r~~~~s~~~A~~~---G--~~~~d~~~~~~~eav~~ADvViLa 185 (462)
++|+|||+|.||..+++.+.... + .+|.+++|..++..+.+.+. | +.. +.+.++++++||+|+.+
T Consensus 126 ~~v~iiG~G~~a~~~~~al~~~~-----~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~----~~~~~~av~~aDIVi~a 196 (314)
T PRK06141 126 SRLLVVGTGRLASLLALAHASVR-----PIKQVRVWGRDPAKAEALAAELRAQGFDAEV----VTDLEAAVRQADIISCA 196 (314)
T ss_pred ceEEEECCcHHHHHHHHHHHhcC-----CCCEEEEEcCCHHHHHHHHHHHHhcCCceEE----eCCHHHHHhcCCEEEEe
Confidence 89999999999999998776520 3 47888888766656655553 4 332 46788899999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
+|.. ..++.. ..++||++|..+
T Consensus 197 T~s~--~pvl~~--~~l~~g~~i~~i 218 (314)
T PRK06141 197 TLST--EPLVRG--EWLKPGTHLDLV 218 (314)
T ss_pred eCCC--CCEecH--HHcCCCCEEEee
Confidence 9865 233331 457889854433
No 148
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=97.86 E-value=4.4e-05 Score=78.30 Aligned_cols=96 Identities=17% Similarity=0.084 Sum_probs=65.7
Q ss_pred CCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHH---HcCceecCCCcCCHhhhhccCCeEEEee
Q 012479 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR---AAGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 110 gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~---~~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
+.++++|||+|.||..+++.|.... ..-+|.+++|..++....+. +.|+.. ..+.+.+|++++||+|+.||
T Consensus 127 ~~~~lgiiG~G~qA~~~l~al~~~~----~~~~v~V~~r~~~~~~~~~~~~~~~g~~v--~~~~~~~eav~~aDiVitaT 200 (325)
T TIGR02371 127 DSSVLGIIGAGRQAWTQLEALSRVF----DLEEVSVYCRTPSTREKFALRASDYEVPV--RAATDPREAVEGCDILVTTT 200 (325)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcC----CCCEEEEECCCHHHHHHHHHHHHhhCCcE--EEeCCHHHHhccCCEEEEec
Confidence 3489999999999999999887641 02367777776555444333 345321 01578999999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccch
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~a~G~~ 215 (462)
|... .++. ...+|||+.|.-++...
T Consensus 201 ~s~~--P~~~--~~~l~~g~~v~~vGs~~ 225 (325)
T TIGR02371 201 PSRK--PVVK--ADWVSEGTHINAIGADA 225 (325)
T ss_pred CCCC--cEec--HHHcCCCCEEEecCCCC
Confidence 8642 2332 23568999887776654
No 149
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=97.83 E-value=8.4e-05 Score=75.33 Aligned_cols=122 Identities=19% Similarity=0.201 Sum_probs=80.5
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHH-HcCceecC-CC--c----CCHhhhhccCCeEE
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEEN-GT--L----GDIYETISGSDLVL 183 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~-~~G~~~~d-~~--~----~~~~eav~~ADvVi 183 (462)
+||+|||.|.||+-+|..|.++ |.+|.+..|..+ ..+.-+ +.|+...+ +. . ....+..+..|+||
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~------G~~V~lv~r~~~-~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~vi 75 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA------GLPVRLILRDRQ-RLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLL 75 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC------CCCeEEEEechH-HHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEE
Confidence 7899999999999999999998 888887777533 233333 33553211 10 0 01112245789999
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEE-EEeccchH-HHhhhccccCCCC-----ccEEecccCCCchh
Q 012479 184 LLISDAAQADNYEKIFSCMKPNSIL-GLSHGFLL-GHLQSMGLDFPKN-----IGVIAVCPKGMGPS 243 (462)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~gaiL-~~a~G~~i-~~~~~~~i~~p~~-----v~VV~v~Pngpg~~ 243 (462)
++||-....+.++.+.|++.+++.| ++--|+.. ..+.. .+|++ +..+.....+|+.+
T Consensus 76 v~vK~~~~~~al~~l~~~l~~~t~vv~lQNGv~~~e~l~~---~~~~~~v~~g~~~~ga~~~~pg~v 139 (305)
T PRK05708 76 LACKAYDAEPAVASLAHRLAPGAELLLLQNGLGSQDAVAA---RVPHARCIFASSTEGAFRDGDWRV 139 (305)
T ss_pred EECCHHhHHHHHHHHHhhCCCCCEEEEEeCCCCCHHHHHH---hCCCCcEEEEEeeeceecCCCCEE
Confidence 9999999999999999999998864 56678853 33333 34443 12233445566665
No 150
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.83 E-value=4.9e-05 Score=77.33 Aligned_cols=75 Identities=17% Similarity=0.184 Sum_probs=59.8
Q ss_pred ccCCCCEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 107 AFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 107 ~l~gikkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
.++| |+|+||| .|.||..+|.+|.+. |..|.++..+. .+.++++++||+||.+
T Consensus 155 ~~~G-k~V~viGrs~~mG~PmA~~L~~~------g~tVtv~~~rT-------------------~~l~e~~~~ADIVIsa 208 (296)
T PRK14188 155 DLSG-LNAVVIGRSNLVGKPMAQLLLAA------NATVTIAHSRT-------------------RDLPAVCRRADILVAA 208 (296)
T ss_pred CCCC-CEEEEEcCCcchHHHHHHHHHhC------CCEEEEECCCC-------------------CCHHHHHhcCCEEEEe
Confidence 5899 9999999 999999999999998 99988874221 1356788999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++...+ +++. ++++|++|++++
T Consensus 209 vg~~~~---v~~~--~lk~GavVIDvG 230 (296)
T PRK14188 209 VGRPEM---VKGD--WIKPGATVIDVG 230 (296)
T ss_pred cCChhh---cchh--eecCCCEEEEcC
Confidence 997653 3321 289999888874
No 151
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.77 E-value=4.4e-05 Score=68.50 Aligned_cols=97 Identities=20% Similarity=0.182 Sum_probs=67.3
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcC---ceecCCCcCCHhhhhccCCe
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG---FTEENGTLGDIYETISGSDL 181 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G---~~~~d~~~~~~~eav~~ADv 181 (462)
..++| +++.|||.|-+|.+++..|.+. |. +|.+.+|+.++..+.+...+ +.. ....+..+.++++|+
T Consensus 8 ~~l~~-~~vlviGaGg~ar~v~~~L~~~------g~~~i~i~nRt~~ra~~l~~~~~~~~~~~--~~~~~~~~~~~~~Di 78 (135)
T PF01488_consen 8 GDLKG-KRVLVIGAGGAARAVAAALAAL------GAKEITIVNRTPERAEALAEEFGGVNIEA--IPLEDLEEALQEADI 78 (135)
T ss_dssp STGTT-SEEEEESSSHHHHHHHHHHHHT------TSSEEEEEESSHHHHHHHHHHHTGCSEEE--EEGGGHCHHHHTESE
T ss_pred CCcCC-CEEEEECCHHHHHHHHHHHHHc------CCCEEEEEECCHHHHHHHHHHcCccccce--eeHHHHHHHHhhCCe
Confidence 46888 9999999999999999999998 87 48889998777777777662 211 014456678899999
Q ss_pred EEEeecchhHHHHHHHHHhcCCCC-cEEEEec
Q 012479 182 VLLLISDAAQADNYEKIFSCMKPN-SILGLSH 212 (462)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~g-aiL~~a~ 212 (462)
||.+||.... .+-++..+...+. .++.|.+
T Consensus 79 vI~aT~~~~~-~i~~~~~~~~~~~~~~v~Dla 109 (135)
T PF01488_consen 79 VINATPSGMP-IITEEMLKKASKKLRLVIDLA 109 (135)
T ss_dssp EEE-SSTTST-SSTHHHHTTTCHHCSEEEES-
T ss_pred EEEecCCCCc-ccCHHHHHHHHhhhhceeccc
Confidence 9999997654 2222333322222 3677774
No 152
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=97.77 E-value=6.4e-05 Score=72.01 Aligned_cols=71 Identities=21% Similarity=0.162 Sum_probs=50.8
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhc-cCCeEE
Q 012479 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS-GSDLVL 183 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~-~ADvVi 183 (462)
...++| |+|+|+|+|+||.++|+.|.+. |.+|++.+++..+..+.+...|... .+.+++.. ++|+++
T Consensus 23 ~~~l~g-k~v~I~G~G~vG~~~A~~L~~~------G~~Vvv~D~~~~~~~~~~~~~g~~~-----v~~~~l~~~~~Dv~v 90 (200)
T cd01075 23 TDSLEG-KTVAVQGLGKVGYKLAEHLLEE------GAKLIVADINEEAVARAAELFGATV-----VAPEEIYSVDADVFA 90 (200)
T ss_pred CCCCCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHcCCEE-----EcchhhccccCCEEE
Confidence 366899 9999999999999999999998 9988866554333333334446542 24455543 799998
Q ss_pred Eeec
Q 012479 184 LLIS 187 (462)
Q Consensus 184 Lavp 187 (462)
.+..
T Consensus 91 p~A~ 94 (200)
T cd01075 91 PCAL 94 (200)
T ss_pred eccc
Confidence 6654
No 153
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=97.68 E-value=7.8e-05 Score=79.00 Aligned_cols=74 Identities=23% Similarity=0.316 Sum_probs=57.5
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
.++| ++|+|||+|.||..+++.|+.. |. +|++.+|...+..+.+.+.|.... ...+..+++.++|+||.+
T Consensus 179 ~~~~-~~vlViGaG~iG~~~a~~L~~~------G~~~V~v~~r~~~ra~~la~~~g~~~~--~~~~~~~~l~~aDvVI~a 249 (423)
T PRK00045 179 DLSG-KKVLVIGAGEMGELVAKHLAEK------GVRKITVANRTLERAEELAEEFGGEAI--PLDELPEALAEADIVISS 249 (423)
T ss_pred CccC-CEEEEECchHHHHHHHHHHHHC------CCCeEEEEeCCHHHHHHHHHHcCCcEe--eHHHHHHHhccCCEEEEC
Confidence 3678 9999999999999999999988 87 788888876665667777664310 123566788999999999
Q ss_pred ecch
Q 012479 186 ISDA 189 (462)
Q Consensus 186 vpd~ 189 (462)
|+..
T Consensus 250 T~s~ 253 (423)
T PRK00045 250 TGAP 253 (423)
T ss_pred CCCC
Confidence 9844
No 154
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=97.65 E-value=0.00081 Score=70.72 Aligned_cols=151 Identities=20% Similarity=0.303 Sum_probs=96.8
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchh-------------------HHHHHHcC-ceecCCCcCC
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-------------------FAEARAAG-FTEENGTLGD 171 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s-------------------~~~A~~~G-~~~~d~~~~~ 171 (462)
.+|+|||+|-+|..+|..+.++ |++| +|.+.+.+. .+.+.+.| +.. +.+
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~------G~~V-iG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lra----Ttd 78 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASA------GFKV-IGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRA----TTD 78 (436)
T ss_pred eEEEEEccccccHHHHHHHHHc------CCce-EeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceE----ecC
Confidence 6899999999999999999998 8886 466544422 33455555 332 345
Q ss_pred HhhhhccCCeEEEeecchhH----------HHHHHHHHhcCCCCcEEEEec----cch--H-HHh-hh-ccccCCCCccE
Q 012479 172 IYETISGSDLVLLLISDAAQ----------ADNYEKIFSCMKPNSILGLSH----GFL--L-GHL-QS-MGLDFPKNIGV 232 (462)
Q Consensus 172 ~~eav~~ADvViLavpd~a~----------~~vl~eI~~~Lk~gaiL~~a~----G~~--i-~~~-~~-~~i~~p~~v~V 232 (462)
.++ ++.||++++|||...- ....+.|++.|++|++|++=+ |.+ + ..+ +. .++.+++|+ +
T Consensus 79 ~~~-l~~~dv~iI~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df-~ 156 (436)
T COG0677 79 PEE-LKECDVFIICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDF-Y 156 (436)
T ss_pred hhh-cccCCEEEEEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCccccee-e
Confidence 554 4599999999984321 223456999999999876443 542 1 122 22 345665553 3
Q ss_pred EecccC--CCchhhHHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 233 IAVCPK--GMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 233 V~v~Pn--gpg~~vr~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~ 287 (462)
+.-+|- .||...+++-. .+-+|. .++++..+.+.++-+.+=..
T Consensus 157 laysPERv~PG~~~~el~~---------~~kVIg---G~tp~~~e~a~~lY~~iv~~ 201 (436)
T COG0677 157 LAYSPERVLPGNVLKELVN---------NPKVIG---GVTPKCAELAAALYKTIVEG 201 (436)
T ss_pred EeeCccccCCCchhhhhhc---------CCceee---cCCHHHHHHHHHHHHHheEE
Confidence 445553 56776544432 344333 46788888888888877544
No 155
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=97.65 E-value=0.00014 Score=73.65 Aligned_cols=76 Identities=22% Similarity=0.252 Sum_probs=60.3
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..++| |+|+|||. |.||..+|..|.+. |..|.++. ++ +.+.++.+++||+||.
T Consensus 154 i~l~G-k~v~vIG~S~ivG~Pla~lL~~~------gatVtv~~---s~----------------t~~l~~~~~~ADIVI~ 207 (284)
T PRK14179 154 VELEG-KHAVVIGRSNIVGKPMAQLLLDK------NATVTLTH---SR----------------TRNLAEVARKADILVV 207 (284)
T ss_pred CCCCC-CEEEEECCCCcCcHHHHHHHHHC------CCEEEEEC---CC----------------CCCHHHHHhhCCEEEE
Confidence 45899 99999999 99999999999998 88888762 11 2357788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
+++..... +. .++++|+++++++
T Consensus 208 avg~~~~v---~~--~~ik~GavVIDvg 230 (284)
T PRK14179 208 AIGRGHFV---TK--EFVKEGAVVIDVG 230 (284)
T ss_pred ecCccccC---CH--HHccCCcEEEEec
Confidence 99975542 21 1389999988873
No 156
>COG5495 Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=0.00076 Score=66.44 Aligned_cols=213 Identities=11% Similarity=0.039 Sum_probs=128.0
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH----cCceecCCCcCCHhhhhccCCeEEEeec
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~----~G~~~~d~~~~~~~eav~~ADvViLavp 187 (462)
..|+|||.|..|.+..+..-+- ++. ++ -..++|.+.|+. .+.. ..+.+...+-.++||.-+|
T Consensus 11 v~~~~vgtgrl~ra~~~ra~h~------~~~--cs-~i~srS~~~a~~LaE~~~a~-----p~d~~~~ael~~~vfv~vp 76 (289)
T COG5495 11 VVVGIVGTGRLGRAALLRADHV------VVA--CS-AISSRSRDRAQNLAETYVAP-----PLDVAKSAELLLLVFVDVP 76 (289)
T ss_pred eEEEEeecchHHHHHHHHhcch------hee--eh-hhhhcCHHHHhhchhccCCC-----ccchhhChhhhceEEecch
Confidence 5799999999999854433222 222 11 122344444443 3322 2344445566688888888
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeecc
Q 012479 188 DAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQ 267 (462)
Q Consensus 188 d~a~~~vl~eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~q 267 (462)
|..+.++.... .-+||++|.+++|++-.-+-. . .-+.+.--..+||+.......+--.+- ++.-..|+ ..
T Consensus 77 d~~~s~vaa~~--~~rpg~iv~HcSga~~~~il~-~-~gr~g~~~asiHP~f~Fsgl~edl~rl-----~d~~~~i~-ea 146 (289)
T COG5495 77 DALYSGVAATS--LNRPGTIVAHCSGANGSGILA-P-LGRQGCIPASIHPAFSFSGLDEDLSRL-----KDTIFGIT-EA 146 (289)
T ss_pred HHHHHHHHHhc--ccCCCeEEEEccCCCchhhhh-h-hhhcCCcceeecccccccCCHHHHHhC-----cccEEEee-cc
Confidence 88666665543 347999999999996322211 0 112234446799987666554444433 23333333 32
Q ss_pred CCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhH-HhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q 012479 268 DVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGIL-LGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGII 346 (462)
Q Consensus 268 d~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL-~G~~paliea~~d~~v~~G~~~e~A~~~~~e~i~Gli 346 (462)
+.....+++.++..+|+.... +.|..-.+||...+. ++.+..+.--..+....+|.++-++.-+.+--+.| .
T Consensus 147 --D~~g~ai~q~la~emgg~~f~----V~~~~r~lYHaaa~~asnf~v~~l~~a~~i~~aag~Dq~e~iv~~~pL~~g-~ 219 (289)
T COG5495 147 --DDVGYAIVQSLALEMGGEPFC----VREEARILYHAAAVHASNFIVTVLADALEIYRAAGDDQPELIVEVGPLARG-A 219 (289)
T ss_pred --cccccHHHHHHHHHhCCCcee----echhHHHHHHHHHHHhhccHHHHHHHHHHHHHHhcCCCcceeeeehHHHHH-H
Confidence 344566789999999997322 135556699998766 44444555556677889999998887765555555 4
Q ss_pred HHHHHHhcH
Q 012479 347 SKIISTQGM 355 (462)
Q Consensus 347 ~~li~e~G~ 355 (462)
.+-.++.|.
T Consensus 220 ~~n~~qrg~ 228 (289)
T COG5495 220 LENTLQRGQ 228 (289)
T ss_pred HHHHHHhhh
Confidence 555555555
No 157
>PRK07340 ornithine cyclodeaminase; Validated
Probab=97.61 E-value=0.00016 Score=73.52 Aligned_cols=91 Identities=22% Similarity=0.184 Sum_probs=66.9
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHc---CceecCCCcCCHhhhhccCCeEEEeec
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYETISGSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~---G~~~~d~~~~~~~eav~~ADvViLavp 187 (462)
++|+|||+|.||..++..+.... ++ +|.++.|..++..+.+.+. ++... +.+.++++.++|+|+.+||
T Consensus 126 ~~v~IiGaG~qa~~~~~al~~~~-----~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~---~~~~~~av~~aDiVitaT~ 197 (304)
T PRK07340 126 GDLLLIGTGVQARAHLEAFAAGL-----PVRRVWVRGRTAASAAAFCAHARALGPTAE---PLDGEAIPEAVDLVVTATT 197 (304)
T ss_pred CEEEEECCcHHHHHHHHHHHHhC-----CCCEEEEEcCCHHHHHHHHHHHHhcCCeeE---ECCHHHHhhcCCEEEEccC
Confidence 89999999999999999997530 44 6778888766655555554 33321 3578899999999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEeccch
Q 012479 188 DAAQADNYEKIFSCMKPNSILGLSHGFL 215 (462)
Q Consensus 188 d~a~~~vl~eI~~~Lk~gaiL~~a~G~~ 215 (462)
... .++. ..++||+.|.-.+...
T Consensus 198 s~~--Pl~~---~~~~~g~hi~~iGs~~ 220 (304)
T PRK07340 198 SRT--PVYP---EAARAGRLVVAVGAFT 220 (304)
T ss_pred CCC--ceeC---ccCCCCCEEEecCCCC
Confidence 664 3443 2478999888776654
No 158
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.58 E-value=0.00041 Score=69.17 Aligned_cols=91 Identities=22% Similarity=0.229 Sum_probs=57.1
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc--CceecCCCcCCHhhhhccCCeEEEeecc
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGDIYETISGSDLVLLLISD 188 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~--G~~~~d~~~~~~~eav~~ADvViLavpd 188 (462)
|+||||||+|.||..+++.|.+. .++++......+....+..... +... +.+.+++..+.|+|+.|+|+
T Consensus 1 m~rVgIiG~G~iG~~~~~~l~~~-----~~~~l~~v~~~~~~~~~~~~~~~~~~~~----~~d~~~l~~~~DvVve~t~~ 71 (265)
T PRK13303 1 MMKVAMIGFGAIGAAVLELLEHD-----PDLRVDWVIVPEHSIDAVRRALGEAVRV----VSSVDALPQRPDLVVECAGH 71 (265)
T ss_pred CcEEEEECCCHHHHHHHHHHhhC-----CCceEEEEEEcCCCHHHHhhhhccCCee----eCCHHHhccCCCEEEECCCH
Confidence 47999999999999999999865 0344333332221111111212 4432 46777764569999999999
Q ss_pred hhHHHHHHHHHhcCCCCc-EEEEecc
Q 012479 189 AAQADNYEKIFSCMKPNS-ILGLSHG 213 (462)
Q Consensus 189 ~a~~~vl~eI~~~Lk~ga-iL~~a~G 213 (462)
..+.++..++. +.|+ +++.+.|
T Consensus 72 ~~~~e~~~~aL---~aGk~Vvi~s~~ 94 (265)
T PRK13303 72 AALKEHVVPIL---KAGIDCAVISVG 94 (265)
T ss_pred HHHHHHHHHHH---HcCCCEEEeChH
Confidence 98877766654 4455 4444444
No 159
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=97.56 E-value=0.00025 Score=73.26 Aligned_cols=95 Identities=21% Similarity=0.260 Sum_probs=69.2
Q ss_pred CCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHH---cCceecCCCcCCHhhhhccCCeEEEe
Q 012479 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 110 gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~---~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
+...++|||+|.|+..|++.++.- +++ +|.|+.|..+...+.+.. .+... -..+.+.++++++||+|+-+
T Consensus 129 da~~laiIGaG~qA~~ql~a~~~v-----~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~-v~a~~s~~~av~~aDiIvt~ 202 (330)
T COG2423 129 DASTLAIIGAGAQARTQLEALKAV-----RDIREIRVYSRDPEAAEAFAARLRKRGGEA-VGAADSAEEAVEGADIVVTA 202 (330)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhh-----CCccEEEEEcCCHHHHHHHHHHHHhhcCcc-ceeccCHHHHhhcCCEEEEe
Confidence 447899999999999999999875 144 678888876655554432 33210 01267889999999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
||... .++. ...++||+.|.-+++.
T Consensus 203 T~s~~--Pil~--~~~l~~G~hI~aiGad 227 (330)
T COG2423 203 TPSTE--PVLK--AEWLKPGTHINAIGAD 227 (330)
T ss_pred cCCCC--Ceec--HhhcCCCcEEEecCCC
Confidence 99876 3443 3457899998877765
No 160
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=97.53 E-value=0.00042 Score=68.74 Aligned_cols=96 Identities=15% Similarity=0.254 Sum_probs=64.2
Q ss_pred CCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecch
Q 012479 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (462)
Q Consensus 111 ikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~ 189 (462)
++||+|||+ |.||..++..+.+. .+++++...+.+.+........|+.. ..+.+++++++|+|+.++||.
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~-----~~~elvav~d~~~~~~~~~~~~~i~~----~~dl~~ll~~~DvVid~t~p~ 71 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAA-----EDLELVAAVDRPGSPLVGQGALGVAI----TDDLEAVLADADVLIDFTTPE 71 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCCccccccCCCCccc----cCCHHHhccCCCEEEECCCHH
Confidence 379999998 99999999988764 15666555554332222223344432 567888888899999999999
Q ss_pred hHHHHHHHHHhcCCCCc-EEEEeccchHHH
Q 012479 190 AQADNYEKIFSCMKPNS-ILGLSHGFLLGH 218 (462)
Q Consensus 190 a~~~vl~eI~~~Lk~ga-iL~~a~G~~i~~ 218 (462)
...++...... .|. +|+-.-|++...
T Consensus 72 ~~~~~~~~al~---~G~~vvigttG~s~~~ 98 (257)
T PRK00048 72 ATLENLEFALE---HGKPLVIGTTGFTEEQ 98 (257)
T ss_pred HHHHHHHHHHH---cCCCEEEECCCCCHHH
Confidence 88777765443 454 343355776543
No 161
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=97.49 E-value=0.00019 Score=76.02 Aligned_cols=75 Identities=20% Similarity=0.230 Sum_probs=57.6
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCC-cEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G-~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
.++| ++|+|||+|.||..+++.|+.. | .+|++.+|...+..+.+.+.|.... ...+..+++.++|+||.+
T Consensus 177 ~l~~-~~VlViGaG~iG~~~a~~L~~~------G~~~V~v~~rs~~ra~~la~~~g~~~i--~~~~l~~~l~~aDvVi~a 247 (417)
T TIGR01035 177 SLKG-KKALLIGAGEMGELVAKHLLRK------GVGKILIANRTYERAEDLAKELGGEAV--KFEDLEEYLAEADIVISS 247 (417)
T ss_pred CccC-CEEEEECChHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHcCCeEe--eHHHHHHHHhhCCEEEEC
Confidence 4778 9999999999999999999988 8 4788888876655567776664310 124566888999999999
Q ss_pred ecchh
Q 012479 186 ISDAA 190 (462)
Q Consensus 186 vpd~a 190 (462)
|+...
T Consensus 248 T~s~~ 252 (417)
T TIGR01035 248 TGAPH 252 (417)
T ss_pred CCCCC
Confidence 97443
No 162
>PRK07589 ornithine cyclodeaminase; Validated
Probab=97.47 E-value=0.00027 Score=73.47 Aligned_cols=98 Identities=18% Similarity=0.214 Sum_probs=67.2
Q ss_pred CCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHH---cCceecCCCcCCHhhhhccCCeEEEe
Q 012479 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 110 gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~---~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
+-++++|||.|.|+..+++.+..-. .+ +|.++.|..++..+.+++ .|+.. ..+.+.++++++||+|+.+
T Consensus 128 da~~l~iiGaG~QA~~~l~a~~~vr-----~i~~V~v~~r~~~~a~~~~~~~~~~~~~v--~~~~~~~~av~~ADIIvta 200 (346)
T PRK07589 128 DSRTMALIGNGAQSEFQALAFKALL-----GIEEIRLYDIDPAATAKLARNLAGPGLRI--VACRSVAEAVEGADIITTV 200 (346)
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhC-----CceEEEEEeCCHHHHHHHHHHHHhcCCcE--EEeCCHHHHHhcCCEEEEe
Confidence 3478999999999999999887641 33 688888775544443333 24321 0156899999999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEeccchH
Q 012479 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFLL 216 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~gaiL~~a~G~~i 216 (462)
|+......+++ ...++||+.|.-.+.+..
T Consensus 201 T~S~~~~Pvl~--~~~lkpG~hV~aIGs~~p 229 (346)
T PRK07589 201 TADKTNATILT--DDMVEPGMHINAVGGDCP 229 (346)
T ss_pred cCCCCCCceec--HHHcCCCcEEEecCCCCC
Confidence 97543223444 135789998877766643
No 163
>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]
Probab=97.46 E-value=0.014 Score=60.51 Aligned_cols=105 Identities=16% Similarity=0.249 Sum_probs=71.4
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhh-cCCcEEEEEecCC---chhHHHHHH-----------cCceecC--CCcCCHhh
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEA-KSDIVVKVGLRKG---SRSFAEARA-----------AGFTEEN--GTLGDIYE 174 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~-g~G~~Vivg~r~~---~~s~~~A~~-----------~G~~~~d--~~~~~~~e 174 (462)
.||+|||.|+=|.++|+.+...-.+. -+..+|..+.+.. .+.....+- -|+.... -.+.|+.+
T Consensus 22 ~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl~e 101 (372)
T KOG2711|consen 22 LKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDLVE 101 (372)
T ss_pred eEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchHHH
Confidence 68999999999999999988751111 1122455544321 110111110 0111000 01578899
Q ss_pred hhccCCeEEEeecchhHHHHHHHHHhcCCCCcE-EEEeccchH
Q 012479 175 TISGSDLVLLLISDAAQADNYEKIFSCMKPNSI-LGLSHGFLL 216 (462)
Q Consensus 175 av~~ADvViLavpd~a~~~vl~eI~~~Lk~gai-L~~a~G~~i 216 (462)
++++||+++..+|.+-...++++|..+++++.. |+.+-||..
T Consensus 102 a~~dADilvf~vPhQf~~~ic~~l~g~vk~~~~aISL~KG~e~ 144 (372)
T KOG2711|consen 102 AAKDADILVFVVPHQFIPRICEQLKGYVKPGATAISLIKGVEV 144 (372)
T ss_pred HhccCCEEEEeCChhhHHHHHHHHhcccCCCCeEEEeecceec
Confidence 999999999999999999999999999999986 788888854
No 164
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=97.46 E-value=0.00028 Score=71.76 Aligned_cols=95 Identities=13% Similarity=0.131 Sum_probs=67.3
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHH----cCceecCCCcCCHhhhhccCCeEEEe
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~----~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
.++++|||.|.||..+++.+..- +.+ +|.++.|..++..+.+.+ .|+.. ..+.+.++++.+||+|+.+
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v-----~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v--~~~~~~~eav~~aDIV~ta 189 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASV-----YNPKRIRVYSRNFDHARAFAERFSKEFGVDI--RPVDNAEAALRDADTITSI 189 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhc-----CCCCEEEEECCCHHHHHHHHHHHHHhcCCcE--EEeCCHHHHHhcCCEEEEe
Confidence 38999999999999999998864 134 688888776655554443 24321 0156899999999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEeccchH
Q 012479 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFLL 216 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~gaiL~~a~G~~i 216 (462)
|+-.. .+++ ...++||+.|.-.+.+..
T Consensus 190 T~s~~--P~~~--~~~l~pg~hV~aiGs~~p 216 (301)
T PRK06407 190 TNSDT--PIFN--RKYLGDEYHVNLAGSNYP 216 (301)
T ss_pred cCCCC--cEec--HHHcCCCceEEecCCCCC
Confidence 99542 3443 235788988877766543
No 165
>PRK08618 ornithine cyclodeaminase; Validated
Probab=97.44 E-value=0.00043 Score=70.87 Aligned_cols=92 Identities=18% Similarity=0.228 Sum_probs=65.3
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHH----cCceecCCCcCCHhhhhccCCeEEEee
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~----~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
++|+|||+|.||.+++..+.... ++ +|.++.|..++..+.+++ .++.. ..+.+.+++++++|+|+.+|
T Consensus 128 ~~v~iiGaG~~a~~~~~al~~~~-----~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~aDiVi~aT 200 (325)
T PRK08618 128 KTLCLIGTGGQAKGQLEAVLAVR-----DIERVRVYSRTFEKAYAFAQEIQSKFNTEI--YVVNSADEAIEEADIIVTVT 200 (325)
T ss_pred cEEEEECCcHHHHHHHHHHHhcC-----CccEEEEECCCHHHHHHHHHHHHHhcCCcE--EEeCCHHHHHhcCCEEEEcc
Confidence 89999999999999998876431 44 577777765555544442 24421 01467889999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccch
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~a~G~~ 215 (462)
|-. + .++. ..+++|+.|.-++.+.
T Consensus 201 ~s~-~-p~i~---~~l~~G~hV~~iGs~~ 224 (325)
T PRK08618 201 NAK-T-PVFS---EKLKKGVHINAVGSFM 224 (325)
T ss_pred CCC-C-cchH---HhcCCCcEEEecCCCC
Confidence 965 2 3443 5679999988777664
No 166
>PRK06046 alanine dehydrogenase; Validated
Probab=97.43 E-value=0.00034 Score=71.70 Aligned_cols=93 Identities=19% Similarity=0.169 Sum_probs=61.9
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHH----cCceecCCCcCCHhhhhccCCeEEEe
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~----~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
.++|+|||+|.||..++.++... .++ .+.+++|..++..+.+.+ .|+.. ..+.+.+++++ +|+|+++
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~-----~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~l~-aDiVv~a 200 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEV-----FDLEEVRVYDRTKSSAEKFVERMSSVVGCDV--TVAEDIEEACD-CDILVTT 200 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhh-----CCceEEEEECCCHHHHHHHHHHHHhhcCceE--EEeCCHHHHhh-CCEEEEe
Confidence 37899999999999999999753 145 455566554443333333 24321 01457888887 9999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEeccch
Q 012479 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~gaiL~~a~G~~ 215 (462)
||... .++. ...+++|+.|.-.+.+.
T Consensus 201 Tps~~--P~~~--~~~l~~g~hV~~iGs~~ 226 (326)
T PRK06046 201 TPSRK--PVVK--AEWIKEGTHINAIGADA 226 (326)
T ss_pred cCCCC--cEec--HHHcCCCCEEEecCCCC
Confidence 99753 3333 23468999887776654
No 167
>PRK06223 malate dehydrogenase; Reviewed
Probab=97.43 E-value=0.00099 Score=67.20 Aligned_cols=69 Identities=25% Similarity=0.239 Sum_probs=43.7
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHH--cCceec--CC---CcCCHhhhhccCCeE
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA--AGFTEE--NG---TLGDIYETISGSDLV 182 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~--~G~~~~--d~---~~~~~~eav~~ADvV 182 (462)
|+||+|||.|+||..+|..+... |+ ++++.+...+.....+.+ ...... +. ...+. +.+++||+|
T Consensus 2 ~~KI~VIGaG~vG~~ia~~la~~------~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiV 74 (307)
T PRK06223 2 RKKISIIGAGNVGATLAHLLALK------ELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVV 74 (307)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC------CCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEE
Confidence 58999999999999999999877 65 777666543322221211 111000 00 02344 568999999
Q ss_pred EEee
Q 012479 183 LLLI 186 (462)
Q Consensus 183 iLav 186 (462)
|+++
T Consensus 75 ii~~ 78 (307)
T PRK06223 75 VITA 78 (307)
T ss_pred EECC
Confidence 9986
No 168
>PLN00203 glutamyl-tRNA reductase
Probab=97.39 E-value=0.00063 Score=74.23 Aligned_cols=85 Identities=18% Similarity=0.133 Sum_probs=60.7
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHc-CceecCCCcCCHhhhhccCCeEEEe
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~-G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
+.+ ++|+|||.|.||..++.+|... |. +|++.+|+..+....+.+. |....-....+..+++.++|+||.+
T Consensus 264 l~~-kkVlVIGAG~mG~~~a~~L~~~------G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsA 336 (519)
T PLN00203 264 HAS-ARVLVIGAGKMGKLLVKHLVSK------GCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTS 336 (519)
T ss_pred CCC-CEEEEEeCHHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEc
Confidence 677 9999999999999999999988 86 6888888766666666654 2211000134567889999999999
Q ss_pred ecc---hhHHHHHHHHH
Q 012479 186 ISD---AAQADNYEKIF 199 (462)
Q Consensus 186 vpd---~a~~~vl~eI~ 199 (462)
|+- -...+.++++.
T Consensus 337 T~s~~pvI~~e~l~~~~ 353 (519)
T PLN00203 337 TSSETPLFLKEHVEALP 353 (519)
T ss_pred cCCCCCeeCHHHHHHhh
Confidence 862 22345555544
No 169
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=97.38 E-value=0.00042 Score=71.06 Aligned_cols=91 Identities=18% Similarity=0.222 Sum_probs=64.6
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHc----CceecCCCcCCHhhhhccCCeEEEee
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~----G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
++++|||+|.||..++..|... .++ +|.|+.|..++..+.+.+. |+... .+.+.++++++||+|+.+|
T Consensus 130 ~~v~iiGaG~qA~~~~~al~~~-----~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~--~~~~~~~av~~aDiVvtaT 202 (326)
T TIGR02992 130 SVVAIFGAGMQARLQLEALTLV-----RDIRSARIWARDSAKAEALALQLSSLLGIDVT--AATDPRAAMSGADIIVTTT 202 (326)
T ss_pred cEEEEECCCHHHHHHHHHHHHh-----CCccEEEEECCCHHHHHHHHHHHHhhcCceEE--EeCCHHHHhccCCEEEEec
Confidence 7999999999999999999753 054 6788888766656555543 54320 1467889999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEecc
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGLSHG 213 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~a~G 213 (462)
|... .++. ...+++|+.|...+.
T Consensus 203 ~s~~--p~i~--~~~l~~g~~i~~vg~ 225 (326)
T TIGR02992 203 PSET--PILH--AEWLEPGQHVTAMGS 225 (326)
T ss_pred CCCC--cEec--HHHcCCCcEEEeeCC
Confidence 9643 2332 134788987765543
No 170
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=97.36 E-value=0.0014 Score=65.46 Aligned_cols=95 Identities=12% Similarity=0.162 Sum_probs=62.7
Q ss_pred CCEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEec-CCchh--HHHHHH-----cCceecCCCcCCHhhhhccCCe
Q 012479 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLR-KGSRS--FAEARA-----AGFTEENGTLGDIYETISGSDL 181 (462)
Q Consensus 111 ikkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r-~~~~s--~~~A~~-----~G~~~~d~~~~~~~eav~~ADv 181 (462)
|+||+||| +|.||..+++.+.+. .+++++...+ .++.. ...+.. .|+.. +.+++++...+|+
T Consensus 1 ~ikV~IiGa~G~MG~~i~~~i~~~-----~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~----~~d~~~l~~~~Dv 71 (266)
T TIGR00036 1 TIKVAVAGAAGRMGRELIKAALAA-----EGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPV----TDDLEAVETDPDV 71 (266)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhC-----CCCEEEEEEecCCccccCCCHHHhcCcCcCCcee----eCCHHHhcCCCCE
Confidence 36899999 699999999999864 1667665555 32221 122222 23432 4577777557999
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCc-EEEEeccchHH
Q 012479 182 VLLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLLG 217 (462)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~ga-iL~~a~G~~i~ 217 (462)
||.++||..+.+++..... .|. +|+-..|++..
T Consensus 72 VIdfT~p~~~~~~~~~al~---~g~~vVigttg~~~e 105 (266)
T TIGR00036 72 LIDFTTPEGVLNHLKFALE---HGVRLVVGTTGFSEE 105 (266)
T ss_pred EEECCChHHHHHHHHHHHH---CCCCEEEECCCCCHH
Confidence 9999999998887776543 343 45445587643
No 171
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=97.34 E-value=0.00081 Score=66.22 Aligned_cols=153 Identities=16% Similarity=0.220 Sum_probs=103.4
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH-----------cCceec--------C-----
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-----------AGFTEE--------N----- 166 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~-----------~G~~~~--------d----- 166 (462)
++.|+|||.|.||..||+-...+ |++|++.+++. +.+.+|.+ .+.... +
T Consensus 11 ~~~V~ivGaG~MGSGIAQv~a~s------g~~V~l~d~~~-~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~r 83 (298)
T KOG2304|consen 11 IKNVAIVGAGQMGSGIAQVAATS------GLNVWLVDANE-DALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDR 83 (298)
T ss_pred ccceEEEcccccchhHHHHHHhc------CCceEEecCCH-HHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHH
Confidence 47899999999999999999999 99988776543 22333322 122110 0
Q ss_pred -CCcCCHhhhhccCCeEEEeecchhH--HHHHHHHHhcCCCCcEE-EEeccchHHHhhhccccCCCCccEEecccCCCch
Q 012479 167 -GTLGDIYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSIL-GLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGP 242 (462)
Q Consensus 167 -~~~~~~~eav~~ADvViLavpd~a~--~~vl~eI~~~Lk~gaiL-~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~ 242 (462)
....+..+++++||+||=++-...- .+++++|-..-++.+++ +-.+++.+..+.. .....-.|.+.|=.-|.+
T Consensus 84 i~~~tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~lt~ia~---~~~~~srf~GlHFfNPvP 160 (298)
T KOG2304|consen 84 IKTSTNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSLTDIAS---ATQRPSRFAGLHFFNPVP 160 (298)
T ss_pred HHHcCCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeHHHHHh---hccChhhhceeeccCCch
Confidence 0145677889999999866653322 34677776667888876 4667787766543 223345788888777777
Q ss_pred hhHHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCC
Q 012479 243 SVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSP 287 (462)
Q Consensus 243 ~vr~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~ 287 (462)
+.. +-+ +.-+.+.+++-......+.+++|.+
T Consensus 161 vMK-LvE-------------Vir~~~TS~eTf~~l~~f~k~~gKt 191 (298)
T KOG2304|consen 161 VMK-LVE-------------VIRTDDTSDETFNALVDFGKAVGKT 191 (298)
T ss_pred hHH-Hhh-------------hhcCCCCCHHHHHHHHHHHHHhCCC
Confidence 632 222 2236788999999999999999975
No 172
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=97.34 E-value=0.00052 Score=70.71 Aligned_cols=85 Identities=9% Similarity=0.175 Sum_probs=55.8
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchhH
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a~ 191 (462)
.+|+|||+|+||..++..+.+. .+++++...+.+... ......+... ..+..+++.+.|+|++|+|...+
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~-----pd~ELVgV~dr~~~~-~~~~~~~v~~----~~d~~e~l~~iDVViIctPs~th 73 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQ-----PDMELVGVFSRRGAE-TLDTETPVYA----VADDEKHLDDVDVLILCMGSATD 73 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhC-----CCcEEEEEEcCCcHH-HHhhcCCccc----cCCHHHhccCCCEEEEcCCCccC
Confidence 5899999999999999999865 156665444443211 1222234432 35677778899999999998877
Q ss_pred HHHHHHHHhcCCCCcEEE
Q 012479 192 ADNYEKIFSCMKPNSILG 209 (462)
Q Consensus 192 ~~vl~eI~~~Lk~gaiL~ 209 (462)
.+... +.|+.|.-++
T Consensus 74 ~~~~~---~~L~aG~NVV 88 (324)
T TIGR01921 74 IPEQA---PYFAQFANTV 88 (324)
T ss_pred HHHHH---HHHHcCCCEE
Confidence 55443 3344555333
No 173
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=97.32 E-value=0.00023 Score=72.67 Aligned_cols=96 Identities=22% Similarity=0.282 Sum_probs=55.0
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHH---cCceecCCCcCCHhhhhccCCeEEEee
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA---AGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~---~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
.++++|||+|.||..++..+..-. ++ +|.|+.|+.++..+.+.+ .|+.. ..+.+.++++++||+|+.+|
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~~-----~i~~v~v~~r~~~~~~~~~~~~~~~~~~v--~~~~~~~~av~~aDii~taT 200 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAVR-----PIKEVRVYSRSPERAEAFAARLRDLGVPV--VAVDSAEEAVRGADIIVTAT 200 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHS-------SEEEEE-SSHHHHHHHHHHHHCCCTCE--EEESSHHHHHTTSSEEEE--
T ss_pred CceEEEECCCHHHHHHHHHHHHhC-----CceEEEEEccChhHHHHHHHhhccccccc--eeccchhhhcccCCEEEEcc
Confidence 378999999999999999998751 44 677888775443333333 24332 12578999999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccch
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~a~G~~ 215 (462)
|......+++ ...++||+.|.-++...
T Consensus 201 ~s~~~~P~~~--~~~l~~g~hi~~iGs~~ 227 (313)
T PF02423_consen 201 PSTTPAPVFD--AEWLKPGTHINAIGSYT 227 (313)
T ss_dssp --SSEEESB---GGGS-TT-EEEE-S-SS
T ss_pred CCCCCCcccc--HHHcCCCcEEEEecCCC
Confidence 9665213333 23578898877666553
No 174
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=97.31 E-value=0.00062 Score=59.71 Aligned_cols=92 Identities=18% Similarity=0.235 Sum_probs=58.4
Q ss_pred EEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEE-EecCC--chhHHHHHH--cCceecCCCcC-CHhhhhccCCeEEEe
Q 012479 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKV-GLRKG--SRSFAEARA--AGFTEENGTLG-DIYETISGSDLVLLL 185 (462)
Q Consensus 113 kIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Viv-g~r~~--~~s~~~A~~--~G~~~~d~~~~-~~~eav~~ADvViLa 185 (462)
||+||| .|.+|..+.+.|.+. + .++++. ..++. .+.+..... .++.. -.+. ...+.++++|+||+|
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~h-p----~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Dvvf~a 73 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEH-P----DFELVALVSSSRSAGKPLSEVFPHPKGFED--LSVEDADPEELSDVDVVFLA 73 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-S----TEEEEEEEESTTTTTSBHHHTTGGGTTTEE--EBEEETSGHHHTTESEEEE-
T ss_pred CEEEECCCCHHHHHHHHHHhcC-C----CccEEEeeeeccccCCeeehhccccccccc--eeEeecchhHhhcCCEEEec
Confidence 799999 999999999999885 1 344333 33332 122332211 11211 0011 233456999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
+|+....++.+.+ +++|..|++.++-
T Consensus 74 ~~~~~~~~~~~~~---~~~g~~ViD~s~~ 99 (121)
T PF01118_consen 74 LPHGASKELAPKL---LKAGIKVIDLSGD 99 (121)
T ss_dssp SCHHHHHHHHHHH---HHTTSEEEESSST
T ss_pred CchhHHHHHHHHH---hhCCcEEEeCCHH
Confidence 9999998888876 4578788888774
No 175
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=97.30 E-value=0.00051 Score=64.67 Aligned_cols=97 Identities=21% Similarity=0.165 Sum_probs=62.3
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc----Cc--eecC-CCcCCHhhhhcc
Q 012479 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GF--TEEN-GTLGDIYETISG 178 (462)
Q Consensus 107 ~l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~----G~--~~~d-~~~~~~~eav~~ 178 (462)
.+++ +++.|+|. |.+|.+++..|.+. |.+|++..|+..+..+.+... +. ...+ ....+..+++++
T Consensus 25 ~l~~-~~vlVlGgtG~iG~~~a~~l~~~------g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (194)
T cd01078 25 DLKG-KTAVVLGGTGPVGQRAAVLLARE------GARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKG 97 (194)
T ss_pred CCCC-CEEEEECCCCHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhc
Confidence 5678 99999996 99999999999988 888887777644433333322 21 1100 001223478899
Q ss_pred CCeEEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 179 ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
+|+||.++|..... ........+++.+++|..
T Consensus 98 ~diVi~at~~g~~~--~~~~~~~~~~~~vv~D~~ 129 (194)
T cd01078 98 ADVVFAAGAAGVEL--LEKLAWAPKPLAVAADVN 129 (194)
T ss_pred CCEEEECCCCCcee--chhhhcccCceeEEEEcc
Confidence 99999999977651 112222345566777653
No 176
>PRK06823 ornithine cyclodeaminase; Validated
Probab=97.30 E-value=0.00062 Score=69.79 Aligned_cols=95 Identities=19% Similarity=0.171 Sum_probs=66.8
Q ss_pred CCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHH---HcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR---AAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 110 gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~---~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
+.++++|||+|.|+..+++.+..-. .+ +|.|+.|..++..+.+. +.|+... .+.+.++++++||+|+.+
T Consensus 127 d~~~l~iiG~G~qA~~~~~a~~~v~-----~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~--~~~~~~~av~~ADIV~ta 199 (315)
T PRK06823 127 HVSAIGIVGTGIQARMQLMYLKNVT-----DCRQLWVWGRSETALEEYRQYAQALGFAVN--TTLDAAEVAHAANLIVTT 199 (315)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcC-----CCCEEEEECCCHHHHHHHHHHHHhcCCcEE--EECCHHHHhcCCCEEEEe
Confidence 3489999999999999999987641 33 78888887665444332 2354321 146789999999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEeccch
Q 012479 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~gaiL~~a~G~~ 215 (462)
|+-.. .+++ ...++||+.|.-++.+.
T Consensus 200 T~s~~--P~~~--~~~l~~G~hi~~iGs~~ 225 (315)
T PRK06823 200 TPSRE--PLLQ--AEDIQPGTHITAVGADS 225 (315)
T ss_pred cCCCC--ceeC--HHHcCCCcEEEecCCCC
Confidence 98542 4443 23578999887776654
No 177
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.29 E-value=0.00062 Score=68.67 Aligned_cols=75 Identities=15% Similarity=0.101 Sum_probs=54.9
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcC-----ceecCCCcCCHhhhhccCC
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG-----FTEENGTLGDIYETISGSD 180 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G-----~~~~d~~~~~~~eav~~AD 180 (462)
.+++ ++|.|||.|-.|.+++..|.+. |. +|.+.+|...+..+.++..+ ... ....+..+.++++|
T Consensus 124 ~~~~-k~vlIlGaGGaaraia~aL~~~------G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~--~~~~~~~~~~~~aD 194 (284)
T PRK12549 124 DASL-ERVVQLGAGGAGAAVAHALLTL------GVERLTIFDVDPARAAALADELNARFPAARA--TAGSDLAAALAAAD 194 (284)
T ss_pred CccC-CEEEEECCcHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHHHHHHhhCCCeEE--EeccchHhhhCCCC
Confidence 4567 8999999999999999999988 87 78888887666666655432 111 00223455678899
Q ss_pred eEEEeecchh
Q 012479 181 LVLLLISDAA 190 (462)
Q Consensus 181 vViLavpd~a 190 (462)
+||.+||...
T Consensus 195 iVInaTp~Gm 204 (284)
T PRK12549 195 GLVHATPTGM 204 (284)
T ss_pred EEEECCcCCC
Confidence 9999999653
No 178
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=97.28 E-value=0.00087 Score=59.38 Aligned_cols=93 Identities=19% Similarity=0.258 Sum_probs=60.6
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhH---HHHH-----HcCceecCCCcCCHhhhhccCCeE
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF---AEAR-----AAGFTEENGTLGDIYETISGSDLV 182 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~---~~A~-----~~G~~~~d~~~~~~~eav~~ADvV 182 (462)
+||+|+|+ |.||..+++.+.+. .+++++.+.++..+.. +... ..|+.. ..+.+++++.+|+|
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~-----~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v----~~~l~~~~~~~DVv 71 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILES-----PGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPV----TDDLEELLEEADVV 71 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHS-----TTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBE----BS-HHHHTTH-SEE
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-----CCcEEEEEEecCCcccccchhhhhhCcCCccccc----chhHHHhcccCCEE
Confidence 58999999 99999999999984 1777666655433100 1111 233433 46889999999999
Q ss_pred EEeecchhHHHHHHHHHhcCCCCc-EEEEeccchH
Q 012479 183 LLLISDAAQADNYEKIFSCMKPNS-ILGLSHGFLL 216 (462)
Q Consensus 183 iLavpd~a~~~vl~eI~~~Lk~ga-iL~~a~G~~i 216 (462)
|-.+-|+...+.++....+ |. +|+=+.|++-
T Consensus 72 IDfT~p~~~~~~~~~~~~~---g~~~ViGTTG~~~ 103 (124)
T PF01113_consen 72 IDFTNPDAVYDNLEYALKH---GVPLVIGTTGFSD 103 (124)
T ss_dssp EEES-HHHHHHHHHHHHHH---T-EEEEE-SSSHH
T ss_pred EEcCChHHhHHHHHHHHhC---CCCEEEECCCCCH
Confidence 9999888887777765544 44 5666788863
No 179
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=97.27 E-value=0.0013 Score=68.17 Aligned_cols=96 Identities=19% Similarity=0.195 Sum_probs=63.9
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhH-HHHHHcCceec-----------CC---CcCCHhhh
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF-AEARAAGFTEE-----------NG---TLGDIYET 175 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~-~~A~~~G~~~~-----------d~---~~~~~~ea 175 (462)
|.||||+|+|.||..+++.+.+. .+++++...+...... ..++..|+... +. ...+.+++
T Consensus 1 ~ikVaI~G~GrIGr~va~al~~~-----~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el 75 (341)
T PRK04207 1 MIKVGVNGYGTIGKRVADAVAAQ-----PDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDL 75 (341)
T ss_pred CeEEEEECCCHHHHHHHHHHhcC-----CCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHh
Confidence 46899999999999999998864 1567665555433222 22343343200 00 02356677
Q ss_pred hccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 176 ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 176 v~~ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
..++|+|+.++|+....+..+.. ++.|+.+++.+|.
T Consensus 76 ~~~vDVVIdaT~~~~~~e~a~~~---~~aGk~VI~~~~~ 111 (341)
T PRK04207 76 LEKADIVVDATPGGVGAKNKELY---EKAGVKAIFQGGE 111 (341)
T ss_pred hccCCEEEECCCchhhHHHHHHH---HHCCCEEEEcCCC
Confidence 78899999999999888777644 3457778888774
No 180
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=97.21 E-value=0.0021 Score=65.57 Aligned_cols=66 Identities=18% Similarity=0.175 Sum_probs=43.7
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHH----------cCceecCCCcCCHhhhhccCC
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA----------AGFTEENGTLGDIYETISGSD 180 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~----------~G~~~~d~~~~~~~eav~~AD 180 (462)
+||+|||.|.||..+|..|... |+ +|++.+.........+.. .+... ...+.++ +++||
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~------g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~---~t~d~~~-~~~aD 71 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEK------ELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVT---GTNNYAD-TANSD 71 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHc------CCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEE---ecCCHHH-hCCCC
Confidence 6899999999999999999887 65 766655532211112110 01110 1245655 78999
Q ss_pred eEEEeec
Q 012479 181 LVLLLIS 187 (462)
Q Consensus 181 vViLavp 187 (462)
+||++.+
T Consensus 72 iVIitag 78 (305)
T TIGR01763 72 IVVITAG 78 (305)
T ss_pred EEEEcCC
Confidence 9999998
No 181
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.20 E-value=0.0006 Score=72.44 Aligned_cols=74 Identities=14% Similarity=0.185 Sum_probs=58.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcC-ceecCCCcCCHhhhhccCCeEE
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVL 183 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G-~~~~d~~~~~~~eav~~ADvVi 183 (462)
..++| ++|.|||.|-||.+++.+|.+. |. ++++.+|...+..+.+.+.| ... ....+..+.+.++|+||
T Consensus 177 ~~l~~-kkvlviGaG~~a~~va~~L~~~------g~~~I~V~nRt~~ra~~La~~~~~~~~--~~~~~l~~~l~~aDiVI 247 (414)
T PRK13940 177 DNISS-KNVLIIGAGQTGELLFRHVTAL------APKQIMLANRTIEKAQKITSAFRNASA--HYLSELPQLIKKADIII 247 (414)
T ss_pred cCccC-CEEEEEcCcHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHHHHhcCCeE--ecHHHHHHHhccCCEEE
Confidence 34678 9999999999999999999988 86 68888888777777777765 221 01244567899999999
Q ss_pred Eeecc
Q 012479 184 LLISD 188 (462)
Q Consensus 184 Lavpd 188 (462)
.||+.
T Consensus 248 ~aT~a 252 (414)
T PRK13940 248 AAVNV 252 (414)
T ss_pred ECcCC
Confidence 99984
No 182
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=97.20 E-value=0.00092 Score=69.91 Aligned_cols=98 Identities=15% Similarity=0.109 Sum_probs=65.2
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-C-CCcCCHhhhhccCCeEEEe
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-N-GTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d-~~~~~~~eav~~ADvViLa 185 (462)
+.+ .+|.|||+|.+|...++.++.. |.+|++.+++..+....+...|.... . ....+..+.++++|+||.+
T Consensus 165 l~~-~~VlViGaG~vG~~aa~~a~~l------Ga~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a 237 (370)
T TIGR00518 165 VEP-GDVTIIGGGVVGTNAAKMANGL------GATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGA 237 (370)
T ss_pred CCC-ceEEEEcCCHHHHHHHHHHHHC------CCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEc
Confidence 456 7899999999999999999988 88887777654433333334443210 0 0012356788999999999
Q ss_pred ecc--hhHHHHH-HHHHhcCCCCcEEEEec
Q 012479 186 ISD--AAQADNY-EKIFSCMKPNSILGLSH 212 (462)
Q Consensus 186 vpd--~a~~~vl-~eI~~~Lk~gaiL~~a~ 212 (462)
++. .....++ ++....|+++.+|++.+
T Consensus 238 ~~~~g~~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 238 VLIPGAKAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred cccCCCCCCcCcCHHHHhcCCCCCEEEEEe
Confidence 842 2223333 45666789999888765
No 183
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=97.20 E-value=0.0024 Score=64.84 Aligned_cols=91 Identities=18% Similarity=0.165 Sum_probs=63.2
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCch--hHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeec
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR--SFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~--s~~~A~~~G~~~~d~~~~~~~eav~--~ADvViLavp 187 (462)
.+|||||+|++|.-++..+.+. . ++++....+.+.. .++.|++.|+... ..+.+++++ +.|+|++++|
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~-~----~~elvaV~d~d~es~~la~A~~~Gi~~~---~~~~e~ll~~~dIDaV~iaTp 73 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRS-E----HLEMVAMVGIDPESDGLARARELGVKTS---AEGVDGLLANPDIDIVFDATS 73 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhC-C----CcEEEEEEeCCcccHHHHHHHHCCCCEE---ECCHHHHhcCCCCCEEEECCC
Confidence 4799999999999998888764 1 4554433333332 3567888887531 346777774 5789999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEecc
Q 012479 188 DAAQADNYEKIFSCMKPNSILGLSHG 213 (462)
Q Consensus 188 d~a~~~vl~eI~~~Lk~gaiL~~a~G 213 (462)
+..+.+...... +.|+.|.+-..
T Consensus 74 ~~~H~e~a~~al---~aGk~VIdekP 96 (285)
T TIGR03215 74 AKAHARHARLLA---ELGKIVIDLTP 96 (285)
T ss_pred cHHHHHHHHHHH---HcCCEEEECCc
Confidence 999988876654 45776655443
No 184
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=97.20 E-value=0.0012 Score=66.55 Aligned_cols=85 Identities=21% Similarity=0.241 Sum_probs=60.9
Q ss_pred CEEEEEcccchH-HHHHHHHHHhhhhhcCC--cEEE-EEecCCchhHHHHHHcCceecCCCcCCHhhhhcc--CCeEEEe
Q 012479 112 NQIGVIGWGSQG-PAQAQNLRDSLAEAKSD--IVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLL 185 (462)
Q Consensus 112 kkIgIIG~G~mG-~AiA~~Lrds~~~~g~G--~~Vi-vg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~--ADvViLa 185 (462)
.||||||+|.++ ..++..+++. + +.++ +.+++.++..+.+++.|+.. ...+.++++++ .|+|+++
T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~------~~~~~~vav~d~~~~~a~~~a~~~~~~~---~~~~~~~ll~~~~iD~V~Ia 74 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPALAAL------GGGLELVAVVDRDPERAEAFAEEFGIAK---AYTDLEELLADPDIDAVYIA 74 (342)
T ss_pred eEEEEEcccHHHHHHhHHHHHhC------CCceEEEEEecCCHHHHHHHHHHcCCCc---ccCCHHHHhcCCCCCEEEEc
Confidence 689999999665 5688888876 4 3333 33455556677888888741 16789998875 5999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEE
Q 012479 186 ISDAAQADNYEKIFSCMKPNSIL 208 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~gaiL 208 (462)
+|+..+.++... .|+.|+.|
T Consensus 75 tp~~~H~e~~~~---AL~aGkhV 94 (342)
T COG0673 75 TPNALHAELALA---ALEAGKHV 94 (342)
T ss_pred CCChhhHHHHHH---HHhcCCEE
Confidence 999999987743 34556543
No 185
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=97.18 E-value=0.0021 Score=65.73 Aligned_cols=92 Identities=16% Similarity=0.121 Sum_probs=65.9
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCc--hhHHHHHHcCceecCCCcCCHhhhhc-----cCCeEEE
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETIS-----GSDLVLL 184 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~--~s~~~A~~~G~~~~d~~~~~~~eav~-----~ADvViL 184 (462)
.||||||+|++|..++..+.++ .++++....+.+. +..+.|++.|+.. ...+.+++++ +.|+|++
T Consensus 5 lrVAIIGtG~IGt~hm~~l~~~-----~~velvAVvdid~es~gla~A~~~Gi~~---~~~~ie~LL~~~~~~dIDiVf~ 76 (302)
T PRK08300 5 LKVAIIGSGNIGTDLMIKILRS-----EHLEPGAMVGIDPESDGLARARRLGVAT---SAEGIDGLLAMPEFDDIDIVFD 76 (302)
T ss_pred CeEEEEcCcHHHHHHHHHHhcC-----CCcEEEEEEeCChhhHHHHHHHHcCCCc---ccCCHHHHHhCcCCCCCCEEEE
Confidence 5899999999999999888865 1455544333333 3446788888763 1356787774 5899999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
++|...+.+...... +.|+.+++....
T Consensus 77 AT~a~~H~e~a~~a~---eaGk~VID~sPA 103 (302)
T PRK08300 77 ATSAGAHVRHAAKLR---EAGIRAIDLTPA 103 (302)
T ss_pred CCCHHHHHHHHHHHH---HcCCeEEECCcc
Confidence 999999988877654 457777766543
No 186
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=97.14 E-value=0.0025 Score=62.70 Aligned_cols=92 Identities=23% Similarity=0.308 Sum_probs=62.6
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecC-CchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchh
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~-~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a 190 (462)
++|+|||||.+|..+..-+++- ..+++.++.+++ .++..+.+...+.. .+.+++|.+++.|+|+=|-.+++
T Consensus 1 l~vgiVGcGaIG~~l~e~v~~~----~~~~e~v~v~D~~~ek~~~~~~~~~~~----~~s~ide~~~~~DlvVEaAS~~A 72 (255)
T COG1712 1 LKVGIVGCGAIGKFLLELVRDG----RVDFELVAVYDRDEEKAKELEASVGRR----CVSDIDELIAEVDLVVEAASPEA 72 (255)
T ss_pred CeEEEEeccHHHHHHHHHHhcC----CcceeEEEEecCCHHHHHHHHhhcCCC----ccccHHHHhhccceeeeeCCHHH
Confidence 4799999999999999988863 013444444444 33333333333333 25789999999999999999999
Q ss_pred HHHHHHHHHhcCCCCc-EEEEeccc
Q 012479 191 QADNYEKIFSCMKPNS-ILGLSHGF 214 (462)
Q Consensus 191 ~~~vl~eI~~~Lk~ga-iL~~a~G~ 214 (462)
..+...++.. .|. +|+.+-|-
T Consensus 73 v~e~~~~~L~---~g~d~iV~SVGA 94 (255)
T COG1712 73 VREYVPKILK---AGIDVIVMSVGA 94 (255)
T ss_pred HHHHhHHHHh---cCCCEEEEechh
Confidence 9988877643 443 55555553
No 187
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=97.13 E-value=0.00086 Score=69.72 Aligned_cols=94 Identities=24% Similarity=0.255 Sum_probs=75.4
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
--+.| |++.|.|||-.|..+|+.+|.. |-+|+|..-.+-+ .-+|.-+||. +...+|+++.+|++|-+
T Consensus 205 ~liaG-K~vVV~GYG~vGrG~A~~~rg~------GA~ViVtEvDPI~-AleA~MdGf~-----V~~m~~Aa~~gDifiT~ 271 (420)
T COG0499 205 VLLAG-KNVVVAGYGWVGRGIAMRLRGM------GARVIVTEVDPIR-ALEAAMDGFR-----VMTMEEAAKTGDIFVTA 271 (420)
T ss_pred eeecC-ceEEEecccccchHHHHHhhcC------CCeEEEEecCchH-HHHHhhcCcE-----EEEhHHhhhcCCEEEEc
Confidence 44667 9999999999999999999987 8899887654333 4456668998 57899999999999999
Q ss_pred ecchhHHHHHH-HHHhcCCCCcEEEEeccch
Q 012479 186 ISDAAQADNYE-KIFSCMKPNSILGLSHGFL 215 (462)
Q Consensus 186 vpd~a~~~vl~-eI~~~Lk~gaiL~~a~G~~ 215 (462)
|-... |+. +.+..||+|++|.-++=|+
T Consensus 272 TGnkd---Vi~~eh~~~MkDgaIl~N~GHFd 299 (420)
T COG0499 272 TGNKD---VIRKEHFEKMKDGAILANAGHFD 299 (420)
T ss_pred cCCcC---ccCHHHHHhccCCeEEecccccc
Confidence 98754 443 5677799999988776564
No 188
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=97.12 E-value=0.0012 Score=61.87 Aligned_cols=76 Identities=18% Similarity=0.258 Sum_probs=57.2
Q ss_pred cccCCCCEEEEEcccch-HHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~m-G~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..|+| ++|.|||.|-| |..+++.|... |.+|.+..|.. .+..+.+++||+||.
T Consensus 40 ~~l~g-k~vlViG~G~~~G~~~a~~L~~~------g~~V~v~~r~~-------------------~~l~~~l~~aDiVIs 93 (168)
T cd01080 40 IDLAG-KKVVVVGRSNIVGKPLAALLLNR------NATVTVCHSKT-------------------KNLKEHTKQADIVIV 93 (168)
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHHhhC------CCEEEEEECCc-------------------hhHHHHHhhCCEEEE
Confidence 45889 99999999987 88899999988 88877776641 245678999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
+++-.. ++.. ..++++.+|+|.+
T Consensus 94 at~~~~---ii~~--~~~~~~~viIDla 116 (168)
T cd01080 94 AVGKPG---LVKG--DMVKPGAVVIDVG 116 (168)
T ss_pred cCCCCc---eecH--HHccCCeEEEEcc
Confidence 999653 2331 1356777777654
No 189
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.11 E-value=0.0009 Score=71.01 Aligned_cols=73 Identities=22% Similarity=0.336 Sum_probs=62.0
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..|++ +++.|||+|-||.-.|+.|... |+ +|+|.+|.-++.++.|.+.|... -...+..+.+.++|+||.
T Consensus 174 ~~L~~-~~vlvIGAGem~~lva~~L~~~------g~~~i~IaNRT~erA~~La~~~~~~~--~~l~el~~~l~~~DvVis 244 (414)
T COG0373 174 GSLKD-KKVLVIGAGEMGELVAKHLAEK------GVKKITIANRTLERAEELAKKLGAEA--VALEELLEALAEADVVIS 244 (414)
T ss_pred ccccc-CeEEEEcccHHHHHHHHHHHhC------CCCEEEEEcCCHHHHHHHHHHhCCee--ecHHHHHHhhhhCCEEEE
Confidence 33788 9999999999999999999999 86 78899999889899999999542 124456778999999999
Q ss_pred eec
Q 012479 185 LIS 187 (462)
Q Consensus 185 avp 187 (462)
+|.
T Consensus 245 sTs 247 (414)
T COG0373 245 STS 247 (414)
T ss_pred ecC
Confidence 986
No 190
>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=97.11 E-value=0.014 Score=57.77 Aligned_cols=206 Identities=13% Similarity=0.158 Sum_probs=126.8
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCc----------hhHHHHHHcCceec----C------CCcCC
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----------RSFAEARAAGFTEE----N------GTLGD 171 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~----------~s~~~A~~~G~~~~----d------~~~~~ 171 (462)
.||+|+|.|..|+++|.-+..+ |++|..++-... +...+.++.|.-.. + +++.+
T Consensus 4 ~ki~ivgSgl~g~~WAmlFAs~------GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~ 77 (313)
T KOG2305|consen 4 GKIAIVGSGLVGSSWAMLFASS------GYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTS 77 (313)
T ss_pred cceeEeecccccchHHHHHhcc------CceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCcc
Confidence 6899999999999999999888 999877654322 12222333343210 0 23578
Q ss_pred HhhhhccCCeEEEeecchhH--HHHHHHHHhcCCCCcEEEEecc-chHHHhhhccccCCCCccEEecccCCCchhhHHhh
Q 012479 172 IYETISGSDLVLLLISDAAQ--ADNYEKIFSCMKPNSILGLSHG-FLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLY 248 (462)
Q Consensus 172 ~~eav~~ADvViLavpd~a~--~~vl~eI~~~Lk~gaiL~~a~G-~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf 248 (462)
++|++++|=.|-=|+|.... ..+|+++-..+.|..+|.-+.+ |-...+.. .+-+.-.++-+||--|..-+
T Consensus 78 l~E~vk~Ai~iQEcvpE~L~lkk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~---gL~~k~q~lvaHPvNPPyfi---- 150 (313)
T KOG2305|consen 78 LNELVKGAIHIQECVPEDLNLKKQLYKQLDEIADPTTILASSTSTFMPSKFSA---GLINKEQCLVAHPVNPPYFI---- 150 (313)
T ss_pred HHHHHhhhhhHHhhchHhhHHHHHHHHHHHHhcCCceEEeccccccChHHHhh---hhhhhhheeEecCCCCCccc----
Confidence 99999999888889996655 3477777666777766654433 22222211 11123467888996654331
Q ss_pred hcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccc-cchhhhHhHHhHHHHHHH------HHH
Q 012479 249 VQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRS-DIFGERGILLGAVHGIVE------SLF 321 (462)
Q Consensus 249 ~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~-dlfgeqtvL~G~~palie------a~~ 321 (462)
-..- +.|++..+++.++...++...+|-..| +.+.|..- .+=-.|-++|+=.-.++. .=.
T Consensus 151 ---------PLvE-lVPaPwTsp~tVdrt~~lM~sigq~pV---~l~rei~Gf~lnriq~Ailne~wrLvasGil~v~dv 217 (313)
T KOG2305|consen 151 ---------PLVE-LVPAPWTSPDTVDRTRALMRSIGQEPV---TLKREILGFALNRIQYAILNETWRLVASGILNVNDV 217 (313)
T ss_pred ---------chhe-eccCCCCChhHHHHHHHHHHHhCCCCc---ccccccccceeccccHHHHHHHHHHHHccCcchhhH
Confidence 1222 567888899999999999999995311 22222110 011112222222222222 224
Q ss_pred HHHHHcCCCHHHHHHHHHHHHH
Q 012479 322 RRFTENGMNEDLAYKNTVECIT 343 (462)
Q Consensus 322 d~~v~~G~~~e~A~~~~~e~i~ 343 (462)
|.-..+|+-|-+|+.-.+||++
T Consensus 218 D~VmS~GLG~RYAflG~lET~H 239 (313)
T KOG2305|consen 218 DAVMSAGLGPRYAFLGPLETAH 239 (313)
T ss_pred HHHHhcCCCcchhcccchhhhh
Confidence 6677899999999998888887
No 191
>PRK06199 ornithine cyclodeaminase; Validated
Probab=97.10 E-value=0.001 Score=69.93 Aligned_cols=93 Identities=19% Similarity=0.196 Sum_probs=63.2
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHc-----Cc---eecCCCcCCHhhhhccC
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA-----GF---TEENGTLGDIYETISGS 179 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~-----G~---~~~d~~~~~~~eav~~A 179 (462)
++.++++|||+|.|+..+++.+..-. ..+ +|.|+.|..++..+.+++. |+ .. +.+.++++++|
T Consensus 153 ~da~~l~iiG~G~QA~~~l~a~~~v~----~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~----~~s~~eav~~A 224 (379)
T PRK06199 153 KDSKVVGLLGPGVMGKTILAAFMAVC----PGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEV----VDSIEEVVRGS 224 (379)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhc----CCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEE----eCCHHHHHcCC
Confidence 34589999999999999999987631 024 6788888765544433322 32 22 57899999999
Q ss_pred CeEEEeecchh----HHHHHHHHHhcCCCCcEEEEe
Q 012479 180 DLVLLLISDAA----QADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 180 DvViLavpd~a----~~~vl~eI~~~Lk~gaiL~~a 211 (462)
|+|+.+|+... ...+++ ...++||+.|.-.
T Consensus 225 DIVvtaT~s~~~~~s~~Pv~~--~~~lkpG~hv~~i 258 (379)
T PRK06199 225 DIVTYCNSGETGDPSTYPYVK--REWVKPGAFLLMP 258 (379)
T ss_pred CEEEEccCCCCCCCCcCcEec--HHHcCCCcEEecC
Confidence 99999997432 123443 2357899877643
No 192
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=97.09 E-value=0.00083 Score=66.85 Aligned_cols=93 Identities=19% Similarity=0.123 Sum_probs=60.1
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc---CceecCCCcCCHhh-hhccCCeEE
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---GFTEENGTLGDIYE-TISGSDLVL 183 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~---G~~~~d~~~~~~~e-av~~ADvVi 183 (462)
.++ +++.|+|.|.+|.+++..|.+. |.+|++.+|...+..+.+++. |... ..+..+ ...++|+||
T Consensus 115 ~~~-k~vliiGaGg~g~aia~~L~~~------g~~v~v~~R~~~~~~~la~~~~~~~~~~----~~~~~~~~~~~~DivI 183 (270)
T TIGR00507 115 RPN-QRVLIIGAGGAARAVALPLLKA------DCNVIIANRTVSKAEELAERFQRYGEIQ----AFSMDELPLHRVDLII 183 (270)
T ss_pred ccC-CEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHhhcCceE----EechhhhcccCccEEE
Confidence 457 8999999999999999999988 888888887655544444432 2211 122332 346899999
Q ss_pred EeecchhHHHHHH-HH-HhcCCCCcEEEEe
Q 012479 184 LLISDAAQADNYE-KI-FSCMKPNSILGLS 211 (462)
Q Consensus 184 Lavpd~a~~~vl~-eI-~~~Lk~gaiL~~a 211 (462)
.++|.....++-+ .+ ...++++.++.|+
T Consensus 184 natp~gm~~~~~~~~~~~~~l~~~~~v~D~ 213 (270)
T TIGR00507 184 NATSAGMSGNIDEPPVPAEKLKEGMVVYDM 213 (270)
T ss_pred ECCCCCCCCCCCCCCCCHHHcCCCCEEEEe
Confidence 9999753321100 00 2235666666655
No 193
>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase. This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH
Probab=97.03 E-value=0.015 Score=57.43 Aligned_cols=86 Identities=15% Similarity=0.183 Sum_probs=61.9
Q ss_pred chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecC--C--------CcCCHhhhhccCCeEEEeecchh
Q 012479 121 SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEEN--G--------TLGDIYETISGSDLVLLLISDAA 190 (462)
Q Consensus 121 ~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d--~--------~~~~~~eav~~ADvViLavpd~a 190 (462)
.||..+|..|.++ |++|.+..|. +..+.-++.|+...+ + ...++++ ....|+||++||-.+
T Consensus 1 aiG~~~a~~L~~~------G~~V~l~~r~--~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vKs~~ 71 (293)
T TIGR00745 1 AVGSLYGAYLARA------GHDVTLLARG--EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVKAYQ 71 (293)
T ss_pred CchHHHHHHHHhC------CCcEEEEecH--HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEeccchh
Confidence 3788999999998 8888877774 334455556754311 1 0112333 568999999999999
Q ss_pred HHHHHHHHHhcCCCCcEE-EEeccch
Q 012479 191 QADNYEKIFSCMKPNSIL-GLSHGFL 215 (462)
Q Consensus 191 ~~~vl~eI~~~Lk~gaiL-~~a~G~~ 215 (462)
..++++.+.|++.++++| .+.-|+.
T Consensus 72 ~~~~l~~l~~~l~~~~~iv~~qNG~g 97 (293)
T TIGR00745 72 TEEAAALLLPLIGKNTKVLFLQNGLG 97 (293)
T ss_pred HHHHHHHhHhhcCCCCEEEEccCCCC
Confidence 999999999999988765 4556774
No 194
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.02 E-value=0.001 Score=66.57 Aligned_cols=77 Identities=21% Similarity=0.224 Sum_probs=55.5
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCC-cEEEEEecCCchhHHHHHHcCceecCCCc-CCHhhhhccCCeEEE
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTL-GDIYETISGSDLVLL 184 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G-~~Vivg~r~~~~s~~~A~~~G~~~~d~~~-~~~~eav~~ADvViL 184 (462)
.+++ +++.|||.|-+|.+++..|.+. | .+|++..|+..+..+.+.+.+-.. .-.. .+..+.+.++|+||.
T Consensus 120 ~~~~-k~vlVlGaGg~a~ai~~aL~~~------g~~~V~v~~R~~~~a~~l~~~~~~~~-~~~~~~~~~~~~~~~DivIn 191 (278)
T PRK00258 120 DLKG-KRILILGAGGAARAVILPLLDL------GVAEITIVNRTVERAEELAKLFGALG-KAELDLELQEELADFDLIIN 191 (278)
T ss_pred CCCC-CEEEEEcCcHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHhhhcc-ceeecccchhccccCCEEEE
Confidence 4778 9999999999999999999988 8 488888887655555555433110 0001 133467789999999
Q ss_pred eecchhH
Q 012479 185 LISDAAQ 191 (462)
Q Consensus 185 avpd~a~ 191 (462)
+||....
T Consensus 192 aTp~g~~ 198 (278)
T PRK00258 192 ATSAGMS 198 (278)
T ss_pred CCcCCCC
Confidence 9997654
No 195
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=97.00 E-value=0.0039 Score=54.83 Aligned_cols=86 Identities=16% Similarity=0.123 Sum_probs=56.9
Q ss_pred CEEEEEc----ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeec
Q 012479 112 NQIGVIG----WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG----~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavp 187 (462)
|+|+||| -+..|.-+..+|++. |++|+--+.+. . .-.|... ..++.|.-...|++++++|
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~------G~~v~~Vnp~~-~-----~i~G~~~----y~sl~e~p~~iDlavv~~~ 64 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAA------GYEVYPVNPKG-G-----EILGIKC----YPSLAEIPEPIDLAVVCVP 64 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHT------T-EEEEESTTC-S-----EETTEE-----BSSGGGCSST-SEEEE-S-
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhC------CCEEEEECCCc-e-----EECcEEe----eccccCCCCCCCEEEEEcC
Confidence 6899999 688899999999998 98865443332 1 1145553 6778874478999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 188 DAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 188 d~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
++...++++++... ..+.++...+..
T Consensus 65 ~~~~~~~v~~~~~~-g~~~v~~~~g~~ 90 (116)
T PF13380_consen 65 PDKVPEIVDEAAAL-GVKAVWLQPGAE 90 (116)
T ss_dssp HHHHHHHHHHHHHH-T-SEEEE-TTS-
T ss_pred HHHHHHHHHHHHHc-CCCEEEEEcchH
Confidence 99999999997654 344455555543
No 196
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=96.97 E-value=0.0042 Score=63.04 Aligned_cols=67 Identities=21% Similarity=0.246 Sum_probs=46.6
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHHHHc-------Cc--eecCCCcCCHhhhhccCC
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA-------GF--TEENGTLGDIYETISGSD 180 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A~~~-------G~--~~~d~~~~~~~eav~~AD 180 (462)
+||+|||.|.+|.++|..|... |+ ++++.++..++....+.+. +. .. ...+ .+.+++||
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~------g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i---~~~~-~~~l~~aD 70 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQ------GIADELVLIDINEEKAEGEALDLEDALAFLPSPVKI---KAGD-YSDCKDAD 70 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEE---EcCC-HHHhCCCC
Confidence 5899999999999999999988 74 6777776554433333321 11 11 1223 34578999
Q ss_pred eEEEeecc
Q 012479 181 LVLLLISD 188 (462)
Q Consensus 181 vViLavpd 188 (462)
+||+++..
T Consensus 71 IVIitag~ 78 (306)
T cd05291 71 IVVITAGA 78 (306)
T ss_pred EEEEccCC
Confidence 99999975
No 197
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=96.97 E-value=0.0036 Score=61.20 Aligned_cols=94 Identities=20% Similarity=0.199 Sum_probs=63.8
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc---EEEEEecCC----chh-------HHHHHHcCceecCCCcCC
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKG----SRS-------FAEARAAGFTEENGTLGD 171 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~---~Vivg~r~~----~~s-------~~~A~~~G~~~~d~~~~~ 171 (462)
..+++ ++|.|+|.|.+|.+++..|.+. |. ++++.+|++ .+. .+.++..+... ...+
T Consensus 21 ~~l~~-~rvlvlGAGgAg~aiA~~L~~~------G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~---~~~~ 90 (226)
T cd05311 21 KKIEE-VKIVINGAGAAGIAIARLLLAA------GAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEK---TGGT 90 (226)
T ss_pred CCccC-CEEEEECchHHHHHHHHHHHHc------CcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCc---ccCC
Confidence 35788 9999999999999999999988 86 477777762 221 33444433211 0136
Q ss_pred HhhhhccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 172 IYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 172 ~~eav~~ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
..++++++|+||-++|+.... +++...|.++.+|.+..
T Consensus 91 l~~~l~~~dvlIgaT~~G~~~---~~~l~~m~~~~ivf~ls 128 (226)
T cd05311 91 LKEALKGADVFIGVSRPGVVK---KEMIKKMAKDPIVFALA 128 (226)
T ss_pred HHHHHhcCCEEEeCCCCCCCC---HHHHHhhCCCCEEEEeC
Confidence 778889999999999865543 23444455676665443
No 198
>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=96.94 E-value=0.0012 Score=68.56 Aligned_cols=93 Identities=18% Similarity=0.193 Sum_probs=70.7
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHH-H-cCceecCCCcCCHhhh---hccCCeEEEee
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-A-AGFTEENGTLGDIYET---ISGSDLVLLLI 186 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~-~-~G~~~~d~~~~~~~ea---v~~ADvViLav 186 (462)
..||.||++.||+++++|+.+. |+.|.+++|..++.-+... + .|.... ...+++|. ++.--+|||++
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~------Gf~v~~yNRT~skvD~flaneak~~~i~--ga~S~ed~v~klk~PR~iillv 78 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADK------GFTVCAYNRTTSKVDEFLANEAKGTKII--GAYSLEDFVSKLKKPRVIILLV 78 (487)
T ss_pred cchhhhhHhhhhhhhhhccccc------CceEEEeccchHhHHHHHHHhhcCCccc--CCCCHHHHHHhcCCCcEEEEEe
Confidence 4699999999999999999999 9999999998765443222 1 132210 14577776 46778999999
Q ss_pred cchhHHH-HHHHHHhcCCCCcEEEEec
Q 012479 187 SDAAQAD-NYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 187 pd~a~~~-vl~eI~~~Lk~gaiL~~a~ 212 (462)
+...-.+ +++++.|+|.+|.+|++-+
T Consensus 79 kAG~pVD~~I~~L~p~LekgDiIIDGG 105 (487)
T KOG2653|consen 79 KAGAPVDQFIEELVPYLEKGDIIIDGG 105 (487)
T ss_pred eCCCcHHHHHHHHHhhcCCCCEEEeCC
Confidence 9777765 6678999999999988765
No 199
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=96.94 E-value=0.0038 Score=64.57 Aligned_cols=95 Identities=14% Similarity=0.192 Sum_probs=58.7
Q ss_pred CCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcC-ceec-CCCcCCHh-hhhccCCeEEEee
Q 012479 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEE-NGTLGDIY-ETISGSDLVLLLI 186 (462)
Q Consensus 111 ikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G-~~~~-d~~~~~~~-eav~~ADvViLav 186 (462)
|+||+|||. |.+|..+++.|.+. .+++++...++.+.....+...+ +... +..+.+.+ +..+++|+|++|+
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~-----p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~al 76 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNH-----PEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLAL 76 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcC-----CCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECC
Confidence 379999997 99999999999865 14455443433222112222222 1100 00122222 2457899999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEecc
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGLSHG 213 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~a~G 213 (462)
|+..+.++..++.. .|..|+|.++
T Consensus 77 P~~~~~~~v~~a~~---aG~~VID~S~ 100 (343)
T PRK00436 77 PHGVSMDLAPQLLE---AGVKVIDLSA 100 (343)
T ss_pred CcHHHHHHHHHHHh---CCCEEEECCc
Confidence 99999888887643 5887887766
No 200
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.93 E-value=0.0036 Score=65.94 Aligned_cols=90 Identities=17% Similarity=0.176 Sum_probs=61.7
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec--------------CC---CcCCHhh
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--------------NG---TLGDIYE 174 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~--------------d~---~~~~~~e 174 (462)
|||+|||.|-.|...+..|.+. |++|+. .+.++.-.+. ...|..+. ++ .+.|.++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~------GHeVv~-vDid~~KV~~-ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~ 72 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAEL------GHEVVC-VDIDESKVEL-LNKGISPIYEPGLEELLKENLASGRLRFTTDYEE 72 (414)
T ss_pred CceEEECCchHHHHHHHHHHHc------CCeEEE-EeCCHHHHHH-HhCCCCCCcCccHHHHHHhccccCcEEEEcCHHH
Confidence 7899999999999999999998 988754 4443322222 12222110 00 1467889
Q ss_pred hhccCCeEEEeecch----------hHHHHHHHHHhcCCCCcEEE
Q 012479 175 TISGSDLVLLLISDA----------AQADNYEKIFSCMKPNSILG 209 (462)
Q Consensus 175 av~~ADvViLavpd~----------a~~~vl~eI~~~Lk~gaiL~ 209 (462)
+++++|++|||||.. .+..+.++|.++++..++|+
T Consensus 73 a~~~adv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV 117 (414)
T COG1004 73 AVKDADVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVV 117 (414)
T ss_pred HHhcCCEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEE
Confidence 999999999999732 12346678999997766654
No 201
>PTZ00117 malate dehydrogenase; Provisional
Probab=96.88 E-value=0.0054 Score=62.88 Aligned_cols=69 Identities=19% Similarity=0.159 Sum_probs=44.4
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHH-------cC--ceecCCCcCCHhhhhc
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA-------AG--FTEENGTLGDIYETIS 177 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~-------~G--~~~~d~~~~~~~eav~ 177 (462)
.|. +||+|||.|++|.+++..+... |+ ++++.+.+.+.....+.+ .+ ... ....+.+ +++
T Consensus 3 ~~~-~KI~IIGaG~vG~~ia~~l~~~------~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i--~~~~d~~-~l~ 72 (319)
T PTZ00117 3 VKR-KKISMIGAGQIGSTVALLILQK------NLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINI--LGTNNYE-DIK 72 (319)
T ss_pred CCC-cEEEEECCCHHHHHHHHHHHHC------CCCeEEEEECCCccchhHHHHHhhhccccCCCeEE--EeCCCHH-HhC
Confidence 456 8999999999999999999887 74 655555443322222211 11 111 0023444 789
Q ss_pred cCCeEEEee
Q 012479 178 GSDLVLLLI 186 (462)
Q Consensus 178 ~ADvViLav 186 (462)
+||+||++.
T Consensus 73 ~ADiVVita 81 (319)
T PTZ00117 73 DSDVVVITA 81 (319)
T ss_pred CCCEEEECC
Confidence 999999999
No 202
>PRK08291 ectoine utilization protein EutC; Validated
Probab=96.88 E-value=0.0024 Score=65.53 Aligned_cols=90 Identities=21% Similarity=0.250 Sum_probs=62.2
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHc----CceecCCCcCCHhhhhccCCeEEEee
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~----G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
++|+|||+|.||.+++..+.... ++ +|.++.|..++..+.+++. |+.. ....+.++++.+||+|+.+|
T Consensus 133 ~~v~IiGaG~~a~~~~~al~~~~-----~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v--~~~~d~~~al~~aDiVi~aT 205 (330)
T PRK08291 133 SRAAVIGAGEQARLQLEALTLVR-----PIREVRVWARDAAKAEAYAADLRAELGIPV--TVARDVHEAVAGADIIVTTT 205 (330)
T ss_pred CEEEEECCCHHHHHHHHHHHhcC-----CCCEEEEEcCCHHHHHHHHHHHhhccCceE--EEeCCHHHHHccCCEEEEee
Confidence 89999999999999999998630 44 6777877766555555432 4431 11467889999999999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
|... .+++. ..+++|+.|...+
T Consensus 206 ~s~~--p~i~~--~~l~~g~~v~~vg 227 (330)
T PRK08291 206 PSEE--PILKA--EWLHPGLHVTAMG 227 (330)
T ss_pred CCCC--cEecH--HHcCCCceEEeeC
Confidence 8642 33332 2367887665443
No 203
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=96.85 E-value=0.0034 Score=66.27 Aligned_cols=80 Identities=19% Similarity=0.171 Sum_probs=58.3
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCC-cEEEEEecCCchhHHHHHHcC---c--eecCC-CcCCHhhhhccCCeEE
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAG---F--TEENG-TLGDIYETISGSDLVL 183 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G-~~Vivg~r~~~~s~~~A~~~G---~--~~~d~-~~~~~~eav~~ADvVi 183 (462)
|++|.|||+|.+|.++|..|.++ + .+|.+..|+.++ .+++...+ + ...|. ......+++++.|+||
T Consensus 1 m~~ilviGaG~Vg~~va~~la~~------~d~~V~iAdRs~~~-~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VI 73 (389)
T COG1748 1 MMKILVIGAGGVGSVVAHKLAQN------GDGEVTIADRSKEK-CARIAELIGGKVEALQVDAADVDALVALIKDFDLVI 73 (389)
T ss_pred CCcEEEECCchhHHHHHHHHHhC------CCceEEEEeCCHHH-HHHHHhhccccceeEEecccChHHHHHHHhcCCEEE
Confidence 58999999999999999999988 6 689999887554 33333332 1 11011 0123457899999999
Q ss_pred EeecchhHHHHHHH
Q 012479 184 LLISDAAQADNYEK 197 (462)
Q Consensus 184 Lavpd~a~~~vl~e 197 (462)
.|.|+.....+++.
T Consensus 74 n~~p~~~~~~i~ka 87 (389)
T COG1748 74 NAAPPFVDLTILKA 87 (389)
T ss_pred EeCCchhhHHHHHH
Confidence 99999988877753
No 204
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=96.83 E-value=0.0058 Score=55.42 Aligned_cols=68 Identities=18% Similarity=0.204 Sum_probs=45.4
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHHHHc-------CceecCCCcCCHhhhhccCCe
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA-------GFTEENGTLGDIYETISGSDL 181 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A~~~-------G~~~~d~~~~~~~eav~~ADv 181 (462)
+||+|||. |+.|.++|..|... ++ ++++.++...+....+.+. +... ....+..+.+++||+
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~------~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~--~i~~~~~~~~~~aDi 72 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQ------GLADEIVLIDINEDKAEGEALDLSHASAPLPSPV--RITSGDYEALKDADI 72 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHT------TTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEE--EEEESSGGGGTTESE
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCCceEEeccCcccceeeehhhhhhhhhccccc--ccccccccccccccE
Confidence 69999999 99999999999988 65 6655555533333333321 1100 002245678899999
Q ss_pred EEEeec
Q 012479 182 VLLLIS 187 (462)
Q Consensus 182 ViLavp 187 (462)
|+++.-
T Consensus 73 vvitag 78 (141)
T PF00056_consen 73 VVITAG 78 (141)
T ss_dssp EEETTS
T ss_pred EEEecc
Confidence 999873
No 205
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.83 E-value=0.003 Score=64.16 Aligned_cols=76 Identities=14% Similarity=0.187 Sum_probs=59.9
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~-mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..|+| ++|.|||.|. +|..+|.-|... |..|++..++ +.+..+.+++||+||.
T Consensus 154 i~l~G-k~vvVIGrs~~VG~pla~lL~~~------gatVtv~~s~-------------------t~~l~~~~~~ADIVIs 207 (286)
T PRK14175 154 IDLEG-KNAVVIGRSHIVGQPVSKLLLQK------NASVTILHSR-------------------SKDMASYLKDADVIVS 207 (286)
T ss_pred CCCCC-CEEEEECCCchhHHHHHHHHHHC------CCeEEEEeCC-------------------chhHHHHHhhCCEEEE
Confidence 46899 9999999988 999999999988 8888877642 1256788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
+++-.. ++.. ..+++|++|+|++
T Consensus 208 Avg~p~---~i~~--~~vk~gavVIDvG 230 (286)
T PRK14175 208 AVGKPG---LVTK--DVVKEGAVIIDVG 230 (286)
T ss_pred CCCCCc---ccCH--HHcCCCcEEEEcC
Confidence 998643 2321 3478999888875
No 206
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.82 E-value=0.0026 Score=64.59 Aligned_cols=76 Identities=18% Similarity=0.191 Sum_probs=59.6
Q ss_pred cccCCCCEEEEEcccch-HHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWGSQ-GPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~m-G~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..++| ++|.|||.|.. |..++.-|... |..|.+.... +.+..+.+++||+||.
T Consensus 154 i~l~G-k~vvViGrs~iVGkPla~lL~~~------~atVt~~hs~-------------------t~~l~~~~~~ADIVV~ 207 (285)
T PRK14189 154 IPLRG-AHAVVIGRSNIVGKPMAMLLLQA------GATVTICHSK-------------------TRDLAAHTRQADIVVA 207 (285)
T ss_pred CCCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEecCC-------------------CCCHHHHhhhCCEEEE
Confidence 45799 99999999988 99999999988 8877764211 2467788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
+++-.. ++.. .++|+|++|++++
T Consensus 208 avG~~~---~i~~--~~ik~gavVIDVG 230 (285)
T PRK14189 208 AVGKRN---VLTA--DMVKPGATVIDVG 230 (285)
T ss_pred cCCCcC---ccCH--HHcCCCCEEEEcc
Confidence 999432 3432 5689999888764
No 207
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=96.79 E-value=0.0031 Score=53.36 Aligned_cols=89 Identities=13% Similarity=0.195 Sum_probs=55.9
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhcc--CCeEEEeecch
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISDA 189 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~--ADvViLavpd~ 189 (462)
.+|.|+|+|+.|.+++..+.+. . |+.+....+.+++.... +-.|+.. ..++.++.+. .|+.+|++|+.
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~---~--g~~i~~~~dv~~~~~G~-~i~gipV----~~~~~~l~~~~~i~iaii~VP~~ 73 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSM---R--GFGIVAVFDVDPEKIGK-EIGGIPV----YGSMDELEEFIEIDIAIITVPAE 73 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHH---H--CECEEEEEEECTTTTTS-EETTEEE----ESSHHHHHHHCTTSEEEEES-HH
T ss_pred CeEEEECCCCcHHHHHHhHHHH---c--CCCCEEEEEcCCCccCc-EECCEEe----eccHHHhhhhhCCCEEEEEcCHH
Confidence 5899999999999999766654 2 44433333333321111 1135553 3377777766 99999999999
Q ss_pred hHHHHHHHHHh-cCCCCcEEEEec
Q 012479 190 AQADNYEKIFS-CMKPNSILGLSH 212 (462)
Q Consensus 190 a~~~vl~eI~~-~Lk~gaiL~~a~ 212 (462)
...++..++.. .+|. ++.++.
T Consensus 74 ~a~~~~~~~~~~gIk~--i~nft~ 95 (96)
T PF02629_consen 74 AAQEVADELVEAGIKG--IVNFTP 95 (96)
T ss_dssp HHHHHHHHHHHTT-SE--EEEESS
T ss_pred HHHHHHHHHHHcCCCE--EEEeCC
Confidence 98888887544 3322 555554
No 208
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=96.79 E-value=0.003 Score=68.28 Aligned_cols=74 Identities=15% Similarity=0.171 Sum_probs=52.6
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEee
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
.+++ ++++|||.|.+|.+++..|.+. |.++++.+|...+..+.+...+.... ...+.. .+.++|+||+++
T Consensus 329 ~~~~-k~vlIiGaGgiG~aia~~L~~~------G~~V~i~~R~~~~~~~la~~~~~~~~--~~~~~~-~l~~~DiVInat 398 (477)
T PRK09310 329 PLNN-QHVAIVGAGGAAKAIATTLARA------GAELLIFNRTKAHAEALASRCQGKAF--PLESLP-ELHRIDIIINCL 398 (477)
T ss_pred CcCC-CEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHhcccee--chhHhc-ccCCCCEEEEcC
Confidence 4677 8999999999999999999998 88888887765544444444332210 011222 257899999999
Q ss_pred cchh
Q 012479 187 SDAA 190 (462)
Q Consensus 187 pd~a 190 (462)
|+..
T Consensus 399 P~g~ 402 (477)
T PRK09310 399 PPSV 402 (477)
T ss_pred CCCC
Confidence 9875
No 209
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.79 E-value=0.016 Score=49.57 Aligned_cols=94 Identities=21% Similarity=0.207 Sum_probs=60.8
Q ss_pred EEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHh---h-hhccCCeEEEeecch
Q 012479 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---E-TISGSDLVLLLISDA 189 (462)
Q Consensus 114 IgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~---e-av~~ADvViLavpd~ 189 (462)
|.|+|+|.+|..+++.|++. +.++++.. .+.+..+.+++.|+..-.+...+.+ + -+++||.|++++++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~------~~~vvvid-~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d 73 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG------GIDVVVID-RDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDD 73 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT------TSEEEEEE-SSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSH
T ss_pred eEEEcCCHHHHHHHHHHHhC------CCEEEEEE-CCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCH
Confidence 57999999999999999998 77776554 4456678888888654222223322 1 368899999999987
Q ss_pred hHHHHHHH-HHhcCCCCcEEEEeccc
Q 012479 190 AQADNYEK-IFSCMKPNSILGLSHGF 214 (462)
Q Consensus 190 a~~~vl~e-I~~~Lk~gaiL~~a~G~ 214 (462)
..--.+-. +........++..+..-
T Consensus 74 ~~n~~~~~~~r~~~~~~~ii~~~~~~ 99 (116)
T PF02254_consen 74 EENLLIALLARELNPDIRIIARVNDP 99 (116)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEESSH
T ss_pred HHHHHHHHHHHHHCCCCeEEEEECCH
Confidence 66543333 33333334456655543
No 210
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.74 E-value=0.0075 Score=61.45 Aligned_cols=70 Identities=20% Similarity=0.231 Sum_probs=44.4
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHHHHc--Cceec---CCCcCCHhhhhccCCeEEE
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--GFTEE---NGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A~~~--G~~~~---d~~~~~~~eav~~ADvViL 184 (462)
|||+|||.|.+|.++|..|... |+ ++++.++...+....+.+. ..... .-...+ .+.+++||+||+
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~------g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d-~~~l~~aDiVii 73 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLR------GLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGD-YADCKGADVVVI 73 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHc------CCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCC-HHHhCCCCEEEE
Confidence 5899999999999999999988 74 5655555433222222221 11000 000123 356899999999
Q ss_pred eecc
Q 012479 185 LISD 188 (462)
Q Consensus 185 avpd 188 (462)
+.+.
T Consensus 74 ta~~ 77 (308)
T cd05292 74 TAGA 77 (308)
T ss_pred ccCC
Confidence 9985
No 211
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=96.73 E-value=0.008 Score=61.79 Aligned_cols=69 Identities=22% Similarity=0.215 Sum_probs=43.8
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCch----hHHHHHH---cC--ceecCCCcCCHhhhhc
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSR----SFAEARA---AG--FTEENGTLGDIYETIS 177 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~----s~~~A~~---~G--~~~~d~~~~~~~eav~ 177 (462)
++. +||+|||.|+||.++|..+... |+ ++++.+..... ..+.... .+ .... ...+. ++++
T Consensus 4 ~~~-~KI~IIGaG~vG~~ia~~la~~------gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~--~~~d~-~~l~ 73 (321)
T PTZ00082 4 IKR-RKISLIGSGNIGGVMAYLIVLK------NLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVI--GTNNY-EDIA 73 (321)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHhC------CCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEE--ECCCH-HHhC
Confidence 345 7999999999999999998877 76 65555443332 1222111 11 1110 12344 6789
Q ss_pred cCCeEEEee
Q 012479 178 GSDLVLLLI 186 (462)
Q Consensus 178 ~ADvViLav 186 (462)
+||+||++.
T Consensus 74 ~aDiVI~ta 82 (321)
T PTZ00082 74 GSDVVIVTA 82 (321)
T ss_pred CCCEEEECC
Confidence 999999966
No 212
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.68 E-value=0.011 Score=57.83 Aligned_cols=82 Identities=18% Similarity=0.099 Sum_probs=57.4
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHH-HcCceec--CCCc-CCHhhh-hccCCeEEEee
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR-AAGFTEE--NGTL-GDIYET-ISGSDLVLLLI 186 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~-~~G~~~~--d~~~-~~~~ea-v~~ADvViLav 186 (462)
|+|.|||+|..|.++|+.|.+. |++|++-++..+...+.+. +.+.... |.+- ..+.++ +.++|+++.++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~------g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t 74 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEE------GHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAAT 74 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhC------CCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEee
Confidence 6899999999999999999999 9988777665444333222 2333211 1111 124455 78899999999
Q ss_pred cchhHHHHHHHHH
Q 012479 187 SDAAQADNYEKIF 199 (462)
Q Consensus 187 pd~a~~~vl~eI~ 199 (462)
....+.-++-.++
T Consensus 75 ~~d~~N~i~~~la 87 (225)
T COG0569 75 GNDEVNSVLALLA 87 (225)
T ss_pred CCCHHHHHHHHHH
Confidence 9988887776654
No 213
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.67 E-value=0.0099 Score=62.59 Aligned_cols=79 Identities=18% Similarity=0.168 Sum_probs=53.6
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH-cCceec--CCC-cCCHhhh-hccCCeEEEee
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEE--NGT-LGDIYET-ISGSDLVLLLI 186 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~-~G~~~~--d~~-~~~~~ea-v~~ADvViLav 186 (462)
|+|.|+|+|.+|.++++.|++. |+++++..++ ....+.+++ .|+... |.+ ....+++ ++++|.|++++
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~------g~~v~vid~~-~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~ 73 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGE------NNDVTVIDTD-EERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVT 73 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCcEEEEECC-HHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEec
Confidence 5899999999999999999998 8888766554 333444443 454221 111 1123445 78999999999
Q ss_pred cchhHHHHHHH
Q 012479 187 SDAAQADNYEK 197 (462)
Q Consensus 187 pd~a~~~vl~e 197 (462)
++......+..
T Consensus 74 ~~~~~n~~~~~ 84 (453)
T PRK09496 74 DSDETNMVACQ 84 (453)
T ss_pred CChHHHHHHHH
Confidence 98766554443
No 214
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.67 E-value=0.0089 Score=57.49 Aligned_cols=85 Identities=12% Similarity=0.055 Sum_probs=57.5
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcC-ceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G-~~~~d~~~~~~~eav~~ADvViL 184 (462)
-.++| ++|.|||.|.+|...++.|.+. |.+|++..+.-.+........| +.. ..... .++-+.++|+||.
T Consensus 6 l~l~~-k~vLVIGgG~va~~ka~~Ll~~------ga~V~VIs~~~~~~l~~l~~~~~i~~-~~~~~-~~~~l~~adlVia 76 (202)
T PRK06718 6 IDLSN-KRVVIVGGGKVAGRRAITLLKY------GAHIVVISPELTENLVKLVEEGKIRW-KQKEF-EPSDIVDAFLVIA 76 (202)
T ss_pred EEcCC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEcCCCCHHHHHHHhCCCEEE-EecCC-ChhhcCCceEEEE
Confidence 45899 9999999999999999999998 8877776554333322222333 221 10111 1335789999999
Q ss_pred eecchhHHHHHHHHH
Q 012479 185 LISDAAQADNYEKIF 199 (462)
Q Consensus 185 avpd~a~~~vl~eI~ 199 (462)
+|.+...-..+.+..
T Consensus 77 aT~d~elN~~i~~~a 91 (202)
T PRK06718 77 ATNDPRVNEQVKEDL 91 (202)
T ss_pred cCCCHHHHHHHHHHH
Confidence 999988766555443
No 215
>PRK10206 putative oxidoreductase; Provisional
Probab=96.67 E-value=0.0064 Score=62.71 Aligned_cols=81 Identities=12% Similarity=0.148 Sum_probs=53.2
Q ss_pred CEEEEEcccchHH-HHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeecc
Q 012479 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISD 188 (462)
Q Consensus 112 kkIgIIG~G~mG~-AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~--~ADvViLavpd 188 (462)
.||||||+|.++. .++..+....+ +++++...+.+.+..+.+.+.+... ...+.+|+++ +.|+|++++|+
T Consensus 2 irvgiiG~G~~~~~~h~~~~~~~~~----~~~l~av~d~~~~~~~~~~~~~~~~---~~~~~~ell~~~~iD~V~I~tp~ 74 (344)
T PRK10206 2 INCAFIGFGKSTTRYHLPYVLNRKD----SWHVAHIFRRHAKPEEQAPIYSHIH---FTSDLDEVLNDPDVKLVVVCTHA 74 (344)
T ss_pred eEEEEECCCHHHhheehhhHhcCCC----CEEEEEEEcCChhHHHHHHhcCCCc---ccCCHHHHhcCCCCCEEEEeCCc
Confidence 5899999999764 45555543210 4566544444444345555565321 1568899885 57999999999
Q ss_pred hhHHHHHHHHH
Q 012479 189 AAQADNYEKIF 199 (462)
Q Consensus 189 ~a~~~vl~eI~ 199 (462)
..+.++..+..
T Consensus 75 ~~H~~~~~~al 85 (344)
T PRK10206 75 DSHFEYAKRAL 85 (344)
T ss_pred hHHHHHHHHHH
Confidence 99988776543
No 216
>PRK11579 putative oxidoreductase; Provisional
Probab=96.67 E-value=0.0082 Score=61.60 Aligned_cols=83 Identities=10% Similarity=0.153 Sum_probs=54.7
Q ss_pred CEEEEEcccchHH-HHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc-CceecCCCcCCHhhhhc--cCCeEEEeec
Q 012479 112 NQIGVIGWGSQGP-AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-GFTEENGTLGDIYETIS--GSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~G~mG~-AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~-G~~~~d~~~~~~~eav~--~ADvViLavp 187 (462)
.||||||+|.+|. .++..++.. .+++++...+.+.+.. +.+. +... ..+.+|+++ +.|+|++++|
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~-----~~~~l~av~d~~~~~~--~~~~~~~~~----~~~~~ell~~~~vD~V~I~tp 73 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGT-----PGLELAAVSSSDATKV--KADWPTVTV----VSEPQHLFNDPNIDLIVIPTP 73 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhC-----CCCEEEEEECCCHHHH--HhhCCCCce----eCCHHHHhcCCCCCEEEEcCC
Confidence 4899999999998 467777654 1566554444433222 2223 2322 568899885 5799999999
Q ss_pred chhHHHHHHHHHhcCCCCcEE
Q 012479 188 DAAQADNYEKIFSCMKPNSIL 208 (462)
Q Consensus 188 d~a~~~vl~eI~~~Lk~gaiL 208 (462)
+..+.++..+.+ +.|+.|
T Consensus 74 ~~~H~~~~~~al---~aGkhV 91 (346)
T PRK11579 74 NDTHFPLAKAAL---EAGKHV 91 (346)
T ss_pred cHHHHHHHHHHH---HCCCeE
Confidence 999988776543 345543
No 217
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=96.64 E-value=0.0085 Score=49.50 Aligned_cols=66 Identities=18% Similarity=0.200 Sum_probs=47.9
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..+++ ++++|+|.|.+|..++..|.+. +. ++.+++| |++|-
T Consensus 19 ~~~~~-~~v~i~G~G~~g~~~a~~l~~~------~~~~v~v~~r-------------------------------di~i~ 60 (86)
T cd05191 19 KSLKG-KTVVVLGAGEVGKGIAKLLADE------GGKKVVLCDR-------------------------------DILVT 60 (86)
T ss_pred CCCCC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEEcC-------------------------------CEEEE
Confidence 34778 9999999999999999999987 53 5555443 99999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
+++...... ++....++++.+|.+.
T Consensus 61 ~~~~~~~~~--~~~~~~~~~~~~v~~~ 85 (86)
T cd05191 61 ATPAGVPVL--EEATAKINEGAVVIDL 85 (86)
T ss_pred cCCCCCCch--HHHHHhcCCCCEEEec
Confidence 998644432 2234556788877654
No 218
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=96.62 E-value=0.012 Score=59.32 Aligned_cols=92 Identities=17% Similarity=0.124 Sum_probs=59.6
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhh-hccCCeEEEeecchh
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLLISDAA 190 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~ea-v~~ADvViLavpd~a 190 (462)
+||||||||.||..++..|.+.. ..++++...+++.....+... ..... +.+++++ ..+.|+|+=|-++++
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~---~~~~~l~~V~~~~~~~~~~~~-~~~~~----~~~l~~ll~~~~DlVVE~A~~~a 74 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADA---AQPCQLAALTRNAADLPPALA-GRVAL----LDGLPGLLAWRPDLVVEAAGQQA 74 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCC---CCceEEEEEecCCHHHHHHhh-ccCcc----cCCHHHHhhcCCCEEEECCCHHH
Confidence 79999999999999999987530 002444433444332222221 12332 6788885 688999999999988
Q ss_pred HHHHHHHHHhcCCCCc-EEEEeccc
Q 012479 191 QADNYEKIFSCMKPNS-ILGLSHGF 214 (462)
Q Consensus 191 ~~~vl~eI~~~Lk~ga-iL~~a~G~ 214 (462)
..+....+. +.|. +++.+-|-
T Consensus 75 v~e~~~~iL---~~g~dlvv~SvGA 96 (267)
T PRK13301 75 IAEHAEGCL---TAGLDMIICSAGA 96 (267)
T ss_pred HHHHHHHHH---hcCCCEEEEChhH
Confidence 888777664 3444 45555453
No 219
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=96.62 E-value=0.013 Score=59.65 Aligned_cols=92 Identities=14% Similarity=0.249 Sum_probs=67.5
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhcc--CCeEEEeecc
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISD 188 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~--ADvViLavpd 188 (462)
.||.|.|. |++|..+.++|++. |+++++...+..-. .+-.|+.. ..++.|+-+. .|++++++|+
T Consensus 9 ~~~~v~~~~~~~g~~~l~~l~~~------g~~~v~pVnp~~~~---~~v~G~~~----y~sv~dlp~~~~~DlAvi~vp~ 75 (291)
T PRK05678 9 TKVIVQGITGKQGTFHTEQMLAY------GTNIVGGVTPGKGG---TTVLGLPV----FNTVAEAVEATGANASVIYVPP 75 (291)
T ss_pred CeEEEeCCCchHHHHHHHHHHHC------CCCEEEEECCCCCC---CeEeCeec----cCCHHHHhhccCCCEEEEEcCH
Confidence 68999995 88999999999988 77644344432000 12247764 6688887776 8999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeccchHH
Q 012479 189 AAQADNYEKIFSCMKPNSILGLSHGFLLG 217 (462)
Q Consensus 189 ~a~~~vl~eI~~~Lk~gaiL~~a~G~~i~ 217 (462)
....+++++... ..-+.++++++||...
T Consensus 76 ~~v~~~l~e~~~-~gvk~avI~s~Gf~~~ 103 (291)
T PRK05678 76 PFAADAILEAID-AGIDLIVCITEGIPVL 103 (291)
T ss_pred HHHHHHHHHHHH-CCCCEEEEECCCCCHH
Confidence 999999998654 2334578899999753
No 220
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=96.58 E-value=0.0092 Score=57.29 Aligned_cols=104 Identities=13% Similarity=0.224 Sum_probs=64.2
Q ss_pred CCEEEEEcccchHHHHHHHHH--HhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEee
Q 012479 111 INQIGVIGWGSQGPAQAQNLR--DSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLI 186 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lr--ds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~--~ADvViLav 186 (462)
+.++.|||+|++|+|++..-- +. |++++...+.++...-.-. .++.+. ...++++.++ +.|+.||+|
T Consensus 84 ~tnviiVG~GnlG~All~Y~f~~~~------~~~iv~~FDv~~~~VG~~~-~~v~V~--~~d~le~~v~~~dv~iaiLtV 154 (211)
T COG2344 84 TTNVIIVGVGNLGRALLNYNFSKKN------GMKIVAAFDVDPDKVGTKI-GDVPVY--DLDDLEKFVKKNDVEIAILTV 154 (211)
T ss_pred ceeEEEEccChHHHHHhcCcchhhc------CceEEEEecCCHHHhCccc-CCeeee--chHHHHHHHHhcCccEEEEEc
Confidence 378999999999999885322 33 7788777776554221111 223321 1344566676 789999999
Q ss_pred cchhHHHHHHHHHhc-CCCCcEEEEeccchHHHhhhccccCCCCccEEe
Q 012479 187 SDAAQADNYEKIFSC-MKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIA 234 (462)
Q Consensus 187 pd~a~~~vl~eI~~~-Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~ 234 (462)
|-....++.+.+... +| .+|-|+.. + +..|+++.|.-
T Consensus 155 Pa~~AQ~vad~Lv~aGVk--GIlNFtPv----~-----l~~pe~V~V~~ 192 (211)
T COG2344 155 PAEHAQEVADRLVKAGVK--GILNFTPV----R-----LQVPEGVIVEN 192 (211)
T ss_pred cHHHHHHHHHHHHHcCCc--eEEeccce----E-----ecCCCCcEEEE
Confidence 988777777765432 32 25665543 2 24466666544
No 221
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=96.55 E-value=0.0068 Score=61.51 Aligned_cols=97 Identities=15% Similarity=0.107 Sum_probs=64.3
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcCceecCCCcCCHh--hhhccCCeE
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIY--ETISGSDLV 182 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~--eav~~ADvV 182 (462)
...+| +++.|+|.|=.+.|++..|.+. |. +++|.+|+.++..+.+...+-........... +..+++|+|
T Consensus 122 ~~~~~-~~vlilGAGGAarAv~~aL~~~------g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dli 194 (283)
T COG0169 122 VDVTG-KRVLILGAGGAARAVAFALAEA------GAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLL 194 (283)
T ss_pred cccCC-CEEEEECCcHHHHHHHHHHHHc------CCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEE
Confidence 34567 9999999999999999999999 86 78999998777777766654110000011111 222269999
Q ss_pred EEeecchhHHHH----HHHHHhcCCCCcEEEEe
Q 012479 183 LLLISDAAQADN----YEKIFSCMKPNSILGLS 211 (462)
Q Consensus 183 iLavpd~a~~~v----l~eI~~~Lk~gaiL~~a 211 (462)
|.+||....... +. ...++++.++.|+
T Consensus 195 INaTp~Gm~~~~~~~~~~--~~~l~~~~~v~D~ 225 (283)
T COG0169 195 INATPVGMAGPEGDSPVP--AELLPKGAIVYDV 225 (283)
T ss_pred EECCCCCCCCCCCCCCCc--HHhcCcCCEEEEe
Confidence 999997665432 11 3345666666654
No 222
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.54 E-value=0.0063 Score=61.67 Aligned_cols=76 Identities=13% Similarity=0.196 Sum_probs=57.9
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~-mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..++| +++.|||.|. .|.+++..|.+. |..|.+..++ ..+..+.+++||+||.
T Consensus 155 i~l~G-k~vvViG~gg~vGkpia~~L~~~------gatVtv~~~~-------------------t~~L~~~~~~aDIvI~ 208 (283)
T PRK14192 155 IELAG-KHAVVVGRSAILGKPMAMMLLNA------NATVTICHSR-------------------TQNLPELVKQADIIVG 208 (283)
T ss_pred CCCCC-CEEEEECCcHHHHHHHHHHHHhC------CCEEEEEeCC-------------------chhHHHHhccCCEEEE
Confidence 46899 9999999997 999999999988 8788777652 1245566789999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
+++... .+. ...+++|++|+|+.
T Consensus 209 AtG~~~---~v~--~~~lk~gavViDvg 231 (283)
T PRK14192 209 AVGKPE---LIK--KDWIKQGAVVVDAG 231 (283)
T ss_pred ccCCCC---cCC--HHHcCCCCEEEEEE
Confidence 996222 232 24578999988764
No 223
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=96.54 E-value=0.011 Score=61.31 Aligned_cols=95 Identities=13% Similarity=0.113 Sum_probs=58.4
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEE-EEecCCchhHHHHHHcCceec--CCCc--CCHhhhhccCCeEEEe
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEE--NGTL--GDIYETISGSDLVLLL 185 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vi-vg~r~~~~s~~~A~~~G~~~~--d~~~--~~~~eav~~ADvViLa 185 (462)
+||+|||. |.+|..+++.|.+. .+++++ +..++.+.........+.... +..+ .+.++..+++|+||+|
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~h-----P~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~a 75 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNH-----PEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLA 75 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC-----CCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEEC
Confidence 58999998 99999999999854 134555 322221111111111221000 0001 2455666789999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
+|.....++..++.. .|..|+|.++.
T Consensus 76 lP~~~s~~~~~~~~~---~G~~VIDlS~~ 101 (346)
T TIGR01850 76 LPHGVSAELAPELLA---AGVKVIDLSAD 101 (346)
T ss_pred CCchHHHHHHHHHHh---CCCEEEeCChh
Confidence 999998888877643 57777777663
No 224
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.52 E-value=0.0053 Score=61.84 Aligned_cols=77 Identities=13% Similarity=0.036 Sum_probs=55.2
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcCceecCCCc---CCHhhhhccCCeE
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTL---GDIYETISGSDLV 182 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~d~~~---~~~~eav~~ADvV 182 (462)
.++| +++.|||.|-+|.+++..|.+. |. +|.|.+|..++..+.+...+....-... .+..+++.++|+|
T Consensus 122 ~~~~-k~vlvlGaGGaarai~~aL~~~------G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiV 194 (282)
T TIGR01809 122 PLAG-FRGLVIGAGGTSRAAVYALASL------GVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVL 194 (282)
T ss_pred ccCC-ceEEEEcCcHHHHHHHHHHHHc------CCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEE
Confidence 4678 9999999999999999999988 87 6888888766666666554321000001 1223556889999
Q ss_pred EEeecchh
Q 012479 183 LLLISDAA 190 (462)
Q Consensus 183 iLavpd~a 190 (462)
|.+||...
T Consensus 195 InaTp~g~ 202 (282)
T TIGR01809 195 VSTVPADV 202 (282)
T ss_pred EECCCCCC
Confidence 99999754
No 225
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=96.52 E-value=0.011 Score=59.66 Aligned_cols=64 Identities=31% Similarity=0.325 Sum_probs=40.2
Q ss_pred EEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHH---Hc----Cc--eecCCCcCCHhhhhccCCeEE
Q 012479 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEAR---AA----GF--TEENGTLGDIYETISGSDLVL 183 (462)
Q Consensus 114 IgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~---~~----G~--~~~d~~~~~~~eav~~ADvVi 183 (462)
|+|||.|+||..+|..|... |+ +|++.+...+.....+. .. +. .. ....+ .+++++||+||
T Consensus 1 I~IIGaG~vG~~ia~~la~~------~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I--~~t~d-~~~l~dADiVI 71 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALK------ELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKV--TGTND-YEDIAGSDVVV 71 (300)
T ss_pred CEEECCCHHHHHHHHHHHhC------CCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEE--EEcCC-HHHhCCCCEEE
Confidence 68999999999999999877 65 77666554332111111 11 10 11 00234 45689999999
Q ss_pred Eee
Q 012479 184 LLI 186 (462)
Q Consensus 184 Lav 186 (462)
++.
T Consensus 72 it~ 74 (300)
T cd01339 72 ITA 74 (300)
T ss_pred Eec
Confidence 977
No 226
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=96.37 E-value=0.0099 Score=61.11 Aligned_cols=95 Identities=20% Similarity=0.125 Sum_probs=64.9
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec--CCCcCCHhhhhccCCeEEEee--c
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGTLGDIYETISGSDLVLLLI--S 187 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~--d~~~~~~~eav~~ADvViLav--p 187 (462)
-||.|||.|..|..-|+-...- |-+|.+.+.+..+....-...|.... -.+...++++++++|+||-++ |
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~gl------gA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIp 242 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGL------GADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIP 242 (371)
T ss_pred ccEEEECCccccchHHHHHhcc------CCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEec
Confidence 4899999999999877765543 66888887765443333333343210 112335788999999999665 5
Q ss_pred chhHHH-HHHHHHhcCCCCcEEEEec
Q 012479 188 DAAQAD-NYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 188 d~a~~~-vl~eI~~~Lk~gaiL~~a~ 212 (462)
-...+. +.+++...||||++|+|++
T Consensus 243 gakaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 243 GAKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred CCCCceehhHHHHHhcCCCcEEEEEE
Confidence 444455 4457888999999987664
No 227
>PRK04148 hypothetical protein; Provisional
Probab=96.36 E-value=0.037 Score=50.43 Aligned_cols=94 Identities=13% Similarity=0.108 Sum_probs=69.0
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-CCCcCCHhhhhccCCeEEEeec
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETISGSDLVLLLIS 187 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~eav~~ADvViLavp 187 (462)
++ ++|.+||+| -|.++|..|.+. |++|+ +.+.++...+.+++.+.... ++-.....+.-+++|+|-=.-|
T Consensus 16 ~~-~kileIG~G-fG~~vA~~L~~~------G~~Vi-aIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirp 86 (134)
T PRK04148 16 KN-KKIVELGIG-FYFKVAKKLKES------GFDVI-VIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRP 86 (134)
T ss_pred cC-CEEEEEEec-CCHHHHHHHHHC------CCEEE-EEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCC
Confidence 56 889999999 899999999988 98875 55666667788888776321 2223334567899999999999
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEe
Q 012479 188 DAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 188 d~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
|.....-+-+++..+...-+|.-.
T Consensus 87 p~el~~~~~~la~~~~~~~~i~~l 110 (134)
T PRK04148 87 PRDLQPFILELAKKINVPLIIKPL 110 (134)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcC
Confidence 887777666777766555455433
No 228
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=96.36 E-value=0.022 Score=57.93 Aligned_cols=91 Identities=15% Similarity=0.277 Sum_probs=68.3
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhcc--CCeEEEeecc
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISD 188 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~--ADvViLavpd 188 (462)
.+|.|.| .|.+|..+-.+|+.. |.+++.+..++ +. ..+-.|+.. ..++.|+-+. .|++++++|+
T Consensus 7 ~~~~~~g~~~~~~~~~~~~~~~~------g~~~v~~V~p~-~~--~~~v~G~~~----y~sv~dlp~~~~~Dlavi~vpa 73 (286)
T TIGR01019 7 TKVIVQGITGSQGSFHTEQMLAY------GTNIVGGVTPG-KG--GTTVLGLPV----FDSVKEAVEETGANASVIFVPA 73 (286)
T ss_pred CcEEEecCCcHHHHHHHHHHHhC------CCCEEEEECCC-CC--cceecCeec----cCCHHHHhhccCCCEEEEecCH
Confidence 6899999 799999999999988 88866665543 11 112357764 6688887765 6999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeccchH
Q 012479 189 AAQADNYEKIFSCMKPNSILGLSHGFLL 216 (462)
Q Consensus 189 ~a~~~vl~eI~~~Lk~gaiL~~a~G~~i 216 (462)
....+++++... ..-..++++++||..
T Consensus 74 ~~v~~~l~e~~~-~Gvk~avIis~Gf~e 100 (286)
T TIGR01019 74 PFAADAIFEAID-AGIELIVCITEGIPV 100 (286)
T ss_pred HHHHHHHHHHHH-CCCCEEEEECCCCCH
Confidence 999999998654 223457889999964
No 229
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=96.33 E-value=0.014 Score=59.82 Aligned_cols=137 Identities=22% Similarity=0.206 Sum_probs=94.4
Q ss_pred hhhhccccCccccccccchhhhhhhhccccccceeecCcccccccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcC
Q 012479 60 MASETALKTPFLLDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKS 139 (462)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~f~~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~ 139 (462)
|.+.-.++-|. .+-|-++-+.|--+|-|-.|.++-+ -.+.- --.+.| |.+.|-|||..|..-|+.||..
T Consensus 168 m~k~G~L~VPA-iNVNDSVTKsKFDnLygcreSl~Dg--ikraT-DvM~aG-Kv~Vv~GYGdVGKgCaqaLkg~------ 236 (434)
T KOG1370|consen 168 MSKNGKLKVPA-INVNDSVTKSKFDNLYGCRESLLDG--IKRAT-DVMIAG-KVAVVCGYGDVGKGCAQALKGF------ 236 (434)
T ss_pred HHhCCceecce-eeccchhhhhhccccccchhhhhhh--hhhhh-hheecc-cEEEEeccCccchhHHHHHhhc------
Confidence 44443333333 5667777777777777766644321 01111 244566 8888999999999999999987
Q ss_pred CcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEeccch
Q 012479 140 DIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (462)
Q Consensus 140 G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~G~~ 215 (462)
|-.|+|..-..-..+ +|.-.|+. +.+.+|+++++|+++-++--..+ +..+.+..||.++||+-.+-|.
T Consensus 237 g~~VivTEiDPI~AL-QAaMeG~~-----V~tm~ea~~e~difVTtTGc~di--i~~~H~~~mk~d~IvCN~Ghfd 304 (434)
T KOG1370|consen 237 GARVIVTEIDPICAL-QAAMEGYE-----VTTLEEAIREVDIFVTTTGCKDI--ITGEHFDQMKNDAIVCNIGHFD 304 (434)
T ss_pred CcEEEEeccCchHHH-HHHhhccE-----eeeHHHhhhcCCEEEEccCCcch--hhHHHHHhCcCCcEEecccccc
Confidence 878887654433333 44446898 57899999999999998875433 3457788899999998666554
No 230
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=96.30 E-value=0.015 Score=63.47 Aligned_cols=94 Identities=15% Similarity=0.150 Sum_probs=65.2
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec--C----C-------CcCC-------
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--N----G-------TLGD------- 171 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~--d----~-------~~~~------- 171 (462)
.|+.|||+|.+|...++.++.. |.+|++.+++ ....+.++..|.... + + +..+
T Consensus 165 akVlViGaG~iGl~Aa~~ak~l------GA~V~v~d~~-~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~ 237 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSL------GAIVRAFDTR-PEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAE 237 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCC-HHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHH
Confidence 7999999999999999999988 8877665554 446788888876520 0 0 0001
Q ss_pred ---HhhhhccCCeEEEee--cchhHHH-HHHHHHhcCCCCcEEEEec
Q 012479 172 ---IYETISGSDLVLLLI--SDAAQAD-NYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 172 ---~~eav~~ADvViLav--pd~a~~~-vl~eI~~~Lk~gaiL~~a~ 212 (462)
..+.++++|+||.++ |-..... +.++....||+|.+|+|.+
T Consensus 238 ~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA 284 (511)
T TIGR00561 238 MELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLA 284 (511)
T ss_pred HHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEee
Confidence 345578999999988 2111222 3346778899999988764
No 231
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=96.28 E-value=0.027 Score=57.77 Aligned_cols=66 Identities=18% Similarity=0.199 Sum_probs=43.9
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHHHHc--------CceecCCCcCCHhhhhccCCe
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--------GFTEENGTLGDIYETISGSDL 181 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A~~~--------G~~~~d~~~~~~~eav~~ADv 181 (462)
+||+|||.|.+|.++|..|... |+ ++.+.+.........+.+. .... ..+..+.+++||+
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~~------~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i----~~~~~~~~~~adi 76 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVNQ------GIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKI----YAGDYSDCKDADL 76 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEE----EeCCHHHhCCCCE
Confidence 7999999999999999999988 76 5666555433322222221 1111 1233456899999
Q ss_pred EEEeec
Q 012479 182 VLLLIS 187 (462)
Q Consensus 182 ViLavp 187 (462)
||++.-
T Consensus 77 vIitag 82 (315)
T PRK00066 77 VVITAG 82 (315)
T ss_pred EEEecC
Confidence 999764
No 232
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.21 E-value=0.041 Score=50.20 Aligned_cols=66 Identities=27% Similarity=0.278 Sum_probs=49.4
Q ss_pred EEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCC---HhhhhccCCeEEEeecc
Q 012479 114 IGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLISD 188 (462)
Q Consensus 114 IgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~---~~eav~~ADvViLavpd 188 (462)
|.|+|. |.+|..+++.|.++ |++|++..|+.++..+ ..++........+ ..++++++|.||.++++
T Consensus 1 I~V~GatG~vG~~l~~~L~~~------~~~V~~~~R~~~~~~~---~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRR------GHEVTALVRSPSKAED---SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP 70 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHT------TSEEEEEESSGGGHHH---CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred eEEECCCChHHHHHHHHHHHC------CCEEEEEecCchhccc---ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence 789995 99999999999999 9999888887655443 4454332222334 35678899999999984
No 233
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=96.16 E-value=0.011 Score=69.35 Aligned_cols=86 Identities=15% Similarity=0.127 Sum_probs=54.5
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhc---------CCcEEEEEecCCchhHHHHHHc-Cc--eecCCCcCCHhh--
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAK---------SDIVVKVGLRKGSRSFAEARAA-GF--TEENGTLGDIYE-- 174 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g---------~G~~Vivg~r~~~~s~~~A~~~-G~--~~~d~~~~~~~e-- 174 (462)
+.+++|+|||+|.+|..++..|.+. .+.. .+..|.|+++...+..+.+... ++ ...| +.+.++
T Consensus 567 ~~~~rIlVLGAG~VG~~~a~~La~~-~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lD--v~D~e~L~ 643 (1042)
T PLN02819 567 KKSQNVLILGAGRVCRPAAEYLASV-KTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLD--VSDSESLL 643 (1042)
T ss_pred ccCCcEEEECCCHHHHHHHHHHHhC-cCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEee--cCCHHHHH
Confidence 3348999999999999999999865 1000 0113666665433333334333 42 1101 345444
Q ss_pred -hhccCCeEEEeecchhHHHHHHH
Q 012479 175 -TISGSDLVLLLISDAAQADNYEK 197 (462)
Q Consensus 175 -av~~ADvViLavpd~a~~~vl~e 197 (462)
+++++|+|+.|+|+..+.++...
T Consensus 644 ~~v~~~DaVIsalP~~~H~~VAka 667 (1042)
T PLN02819 644 KYVSQVDVVISLLPASCHAVVAKA 667 (1042)
T ss_pred HhhcCCCEEEECCCchhhHHHHHH
Confidence 44689999999999988887764
No 234
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=96.14 E-value=0.018 Score=58.50 Aligned_cols=76 Identities=17% Similarity=0.144 Sum_probs=59.0
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~-mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..|+| ++|.|||.|. .|..++.-|... |..|.+..+. +.++.+.+++||+||.
T Consensus 155 i~l~G-k~vvViGrs~iVG~Pla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvi~ 208 (285)
T PRK10792 155 IDTYG-LNAVVVGASNIVGRPMSLELLLA------GCTVTVCHRF-------------------TKNLRHHVRNADLLVV 208 (285)
T ss_pred CCCCC-CEEEEECCCcccHHHHHHHHHHC------CCeEEEEECC-------------------CCCHHHHHhhCCEEEE
Confidence 46889 9999999998 999999999887 7788776432 2367788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++.-... +. ..++++|++|++++
T Consensus 209 avG~p~~---v~--~~~vk~gavVIDvG 231 (285)
T PRK10792 209 AVGKPGF---IP--GEWIKPGAIVIDVG 231 (285)
T ss_pred cCCCccc---cc--HHHcCCCcEEEEcc
Confidence 9953222 22 15678999988875
No 235
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=96.12 E-value=0.019 Score=52.40 Aligned_cols=75 Identities=15% Similarity=0.143 Sum_probs=56.9
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..++| ++|.|||-+ ..|..++.-|.+. |..|.+..++ ..+.++.+++||+|+.
T Consensus 24 ~~~~g-k~v~VvGrs~~vG~pla~lL~~~------gatV~~~~~~-------------------t~~l~~~v~~ADIVvs 77 (140)
T cd05212 24 VRLDG-KKVLVVGRSGIVGAPLQCLLQRD------GATVYSCDWK-------------------TIQLQSKVHDADVVVV 77 (140)
T ss_pred CCCCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEeCCC-------------------CcCHHHHHhhCCEEEE
Confidence 46889 999999966 7889999999887 8887766432 1256788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
++.-.. +++ ...+|||++|.+.
T Consensus 78 Atg~~~---~i~--~~~ikpGa~Vidv 99 (140)
T cd05212 78 GSPKPE---KVP--TEWIKPGATVINC 99 (140)
T ss_pred ecCCCC---ccC--HHHcCCCCEEEEc
Confidence 998652 233 3458999987754
No 236
>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases. linked to 3D####ucture
Probab=96.11 E-value=0.01 Score=63.21 Aligned_cols=82 Identities=17% Similarity=0.114 Sum_probs=48.3
Q ss_pred CEEEEEcccchHHHHHH--HHHHhhhhhcCCcEEEEEecCCchhHHHHHH--------cCceecCCCcCCHhhhhccCCe
Q 012479 112 NQIGVIGWGSQGPAQAQ--NLRDSLAEAKSDIVVKVGLRKGSRSFAEARA--------AGFTEENGTLGDIYETISGSDL 181 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~--~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~--------~G~~~~d~~~~~~~eav~~ADv 181 (462)
.||+|||.|++|.+.+. .+..... -.|.+|++.++..+ ..+.... .+....=..+.|..+++++||+
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~--~~g~eV~L~Did~e-~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~ 77 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPE--LSGSTIALMDIDEE-RLETVEILAKKIVEELGAPLKIEATTDRREALDGADF 77 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCC--CCCCEEEEECCCHH-HHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCE
Confidence 48999999999998766 4532100 11557776655433 2222111 1110000014577899999999
Q ss_pred EEEeecchhHHHHHH
Q 012479 182 VLLLISDAAQADNYE 196 (462)
Q Consensus 182 ViLavpd~a~~~vl~ 196 (462)
||.+++........+
T Consensus 78 Vi~ai~~~~~~~~~~ 92 (423)
T cd05297 78 VINTIQVGGHEYTET 92 (423)
T ss_pred EEEeeEecCccchhh
Confidence 999999765544433
No 237
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.09 E-value=0.02 Score=53.03 Aligned_cols=88 Identities=15% Similarity=0.084 Sum_probs=58.3
Q ss_pred ccccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCC
Q 012479 101 FNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSD 180 (462)
Q Consensus 101 f~~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~AD 180 (462)
||.. -.|+| ++|.|||.|.+|...++.|.+. |.+|.+....- ..+......+.. +...... +-++++|
T Consensus 5 ~P~~-l~l~~-~~vlVvGGG~va~rka~~Ll~~------ga~V~VIsp~~--~~~l~~l~~i~~-~~~~~~~-~dl~~a~ 72 (157)
T PRK06719 5 YPLM-FNLHN-KVVVIIGGGKIAYRKASGLKDT------GAFVTVVSPEI--CKEMKELPYITW-KQKTFSN-DDIKDAH 72 (157)
T ss_pred cceE-EEcCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCcc--CHHHHhccCcEE-EecccCh-hcCCCce
Confidence 5555 67899 9999999999999999999998 88877663321 122211112221 1111222 2368899
Q ss_pred eEEEeecchhHHHHHHHHHh
Q 012479 181 LVLLLISDAAQADNYEKIFS 200 (462)
Q Consensus 181 vViLavpd~a~~~vl~eI~~ 200 (462)
+||.+|.+...-..+.....
T Consensus 73 lViaaT~d~e~N~~i~~~a~ 92 (157)
T PRK06719 73 LIYAATNQHAVNMMVKQAAH 92 (157)
T ss_pred EEEECCCCHHHHHHHHHHHH
Confidence 99999999887766655543
No 238
>PRK14982 acyl-ACP reductase; Provisional
Probab=96.05 E-value=0.013 Score=60.99 Aligned_cols=94 Identities=15% Similarity=0.168 Sum_probs=61.8
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEE
Q 012479 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (462)
Q Consensus 106 ~~l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvVi 183 (462)
..++| ++|.|+|. |.||..+++.|... .|. ++++..|...+....+.+.+.. ...+..+++.++|+|+
T Consensus 151 ~~l~~-k~VLVtGAtG~IGs~lar~L~~~-----~gv~~lilv~R~~~rl~~La~el~~~----~i~~l~~~l~~aDiVv 220 (340)
T PRK14982 151 IDLSK-ATVAVVGATGDIGSAVCRWLDAK-----TGVAELLLVARQQERLQELQAELGGG----KILSLEEALPEADIVV 220 (340)
T ss_pred cCcCC-CEEEEEccChHHHHHHHHHHHhh-----CCCCEEEEEcCCHHHHHHHHHHhccc----cHHhHHHHHccCCEEE
Confidence 36888 99999998 89999999999743 043 6666666544444445543311 1346778999999999
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 184 LLISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
.++...... ++.. ..++++.+++|.+
T Consensus 221 ~~ts~~~~~-~I~~--~~l~~~~~viDiA 246 (340)
T PRK14982 221 WVASMPKGV-EIDP--ETLKKPCLMIDGG 246 (340)
T ss_pred ECCcCCcCC-cCCH--HHhCCCeEEEEec
Confidence 998743221 1110 2346777777664
No 239
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=95.99 E-value=0.0095 Score=57.36 Aligned_cols=81 Identities=10% Similarity=0.203 Sum_probs=51.4
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhcc--CCeEEEeecch
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISDA 189 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~--ADvViLavpd~ 189 (462)
++|+|||+|.+|.+++..+... + .|++++...+.++..... ...|+.. ....+..+.+++ .|+|++++|+.
T Consensus 85 ~rV~IIGaG~iG~~l~~~~~~~--~--~g~~ivgv~D~d~~~~~~-~i~g~~v--~~~~~l~~li~~~~iD~ViIa~P~~ 157 (213)
T PRK05472 85 WNVALVGAGNLGRALLNYNGFE--K--RGFKIVAAFDVDPEKIGT-KIGGIPV--YHIDELEEVVKENDIEIGILTVPAE 157 (213)
T ss_pred cEEEEECCCHHHHHHHHhhhcc--c--CCcEEEEEEECChhhcCC-EeCCeEE--cCHHHHHHHHHHCCCCEEEEeCCch
Confidence 6899999999999999864321 1 167766555543321111 1123321 013356677654 99999999999
Q ss_pred hHHHHHHHHH
Q 012479 190 AQADNYEKIF 199 (462)
Q Consensus 190 a~~~vl~eI~ 199 (462)
.+.++.+.+.
T Consensus 158 ~~~~i~~~l~ 167 (213)
T PRK05472 158 AAQEVADRLV 167 (213)
T ss_pred hHHHHHHHHH
Confidence 9887776554
No 240
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=95.93 E-value=0.036 Score=59.46 Aligned_cols=87 Identities=17% Similarity=0.221 Sum_probs=66.9
Q ss_pred CEEEEEcc----cchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 112 NQIGVIGW----GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 112 kkIgIIG~----G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
++|+|||. |+.|.-+.++|++. |+ +|+ ....... +-.|+.. ..+++|+-...|+++++
T Consensus 8 ~siavvGaS~~~~~~g~~~~~~l~~~------gf~g~v~-~Vnp~~~-----~i~G~~~----~~sl~~lp~~~Dlavi~ 71 (447)
T TIGR02717 8 KSVAVIGASRDPGKVGYAIMKNLIEG------GYKGKIY-PVNPKAG-----EILGVKA----YPSVLEIPDPVDLAVIV 71 (447)
T ss_pred CEEEEEccCCCCCchHHHHHHHHHhC------CCCCcEE-EECCCCC-----ccCCccc----cCCHHHCCCCCCEEEEe
Confidence 89999999 88999999999988 76 453 3333221 2357664 56788887788999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEeccch
Q 012479 186 ISDAAQADNYEKIFSCMKPNSILGLSHGFL 215 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~gaiL~~a~G~~ 215 (462)
+|++...+++++... ..-..+|++++||.
T Consensus 72 vp~~~~~~~l~e~~~-~gv~~~vi~s~gf~ 100 (447)
T TIGR02717 72 VPAKYVPQVVEECGE-KGVKGAVVITAGFK 100 (447)
T ss_pred cCHHHHHHHHHHHHh-cCCCEEEEECCCcc
Confidence 999999999998765 34455788899984
No 241
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=95.91 E-value=0.053 Score=51.82 Aligned_cols=69 Identities=22% Similarity=0.274 Sum_probs=51.3
Q ss_pred EEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCch-hHHHHHHcCceecCCCcC---CHhhhhccCCeEEEeecc
Q 012479 114 IGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARAAGFTEENGTLG---DIYETISGSDLVLLLISD 188 (462)
Q Consensus 114 IgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~-s~~~A~~~G~~~~d~~~~---~~~eav~~ADvViLavpd 188 (462)
|.|+|. |.+|.+++..|.+. +++|.+..|+..+ ..+..+..|......... ++.++++++|.||++++.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~------~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSA------GFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHT------TGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred CEEECCccHHHHHHHHHHHhC------CCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence 789995 99999999999998 8999888887533 344556677753222222 345689999999999993
No 242
>PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional
Probab=95.91 E-value=0.046 Score=56.44 Aligned_cols=115 Identities=12% Similarity=0.183 Sum_probs=80.6
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCc--hhHHHHHHcCceecCCCcCCHhhhhcc--CCeEEEee
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLI 186 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~--~s~~~A~~~G~~~~d~~~~~~~eav~~--ADvViLav 186 (462)
.||-|-|. |.+|.-+++.+++. |-+|+.|..+.. +... ..|+.. ..++.|+.+. +|+.++++
T Consensus 30 t~v~vqGitg~~g~~h~~~~~~y------gt~iv~GV~Pgkgg~~v~---~~Gvpv----y~sv~ea~~~~~~D~avI~V 96 (317)
T PTZ00187 30 TKVICQGITGKQGTFHTEQAIEY------GTKMVGGVNPKKAGTTHL---KHGLPV----FATVKEAKKATGADASVIYV 96 (317)
T ss_pred CeEEEecCCChHHHHHHHHHHHh------CCcEEEEECCCCCCceEe---cCCccc----cCCHHHHhcccCCCEEEEec
Confidence 68999994 99999999999999 989988887643 3221 126664 6789999887 99999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccchHHH---hhhccccCCCCccEEecccCCCchh
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGH---LQSMGLDFPKNIGVIAVCPKGMGPS 243 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~a~G~~i~~---~~~~~i~~p~~v~VV~v~Pngpg~~ 243 (462)
|+....+.+.|.... .-..+|+++.||.... +++ ...-..++.+|+ ||+||-.
T Consensus 97 Pa~~v~dai~Ea~~a-GI~~~ViiteGfpe~d~~~l~~-~~~~~~g~rliG--PNc~Gii 152 (317)
T PTZ00187 97 PPPHAASAIIEAIEA-EIPLVVCITEGIPQHDMVKVKH-ALLSQNKTRLIG--PNCPGII 152 (317)
T ss_pred CHHHHHHHHHHHHHc-CCCEEEEECCCCchhhHHHHHH-HHhhcCCCEEEC--CCCceEE
Confidence 999999988875442 1234788999996432 221 111123455554 8887754
No 243
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=95.90 E-value=0.037 Score=47.35 Aligned_cols=75 Identities=19% Similarity=0.181 Sum_probs=49.1
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEee
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
.++| ++|.|||.|..|..=++.|.+. |-+|++..... .. .+..+... ....++-+.++|+|++++
T Consensus 4 ~l~~-~~vlVvGgG~va~~k~~~Ll~~------gA~v~vis~~~----~~-~~~~i~~~---~~~~~~~l~~~~lV~~at 68 (103)
T PF13241_consen 4 DLKG-KRVLVVGGGPVAARKARLLLEA------GAKVTVISPEI----EF-SEGLIQLI---RREFEEDLDGADLVFAAT 68 (103)
T ss_dssp --TT--EEEEEEESHHHHHHHHHHCCC------TBEEEEEESSE----HH-HHTSCEEE---ESS-GGGCTTESEEEE-S
T ss_pred EcCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEECCch----hh-hhhHHHHH---hhhHHHHHhhheEEEecC
Confidence 4788 9999999999999999999998 88887765542 11 11223221 123446688999999999
Q ss_pred cchhHHHHHH
Q 012479 187 SDAAQADNYE 196 (462)
Q Consensus 187 pd~a~~~vl~ 196 (462)
.+....+-+.
T Consensus 69 ~d~~~n~~i~ 78 (103)
T PF13241_consen 69 DDPELNEAIY 78 (103)
T ss_dssp S-HHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 9877655443
No 244
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.84 E-value=0.031 Score=61.15 Aligned_cols=97 Identities=14% Similarity=0.101 Sum_probs=66.8
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec--CCCc-------------CCH
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE--NGTL-------------GDI 172 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~--d~~~-------------~~~ 172 (462)
..+ .||.|||.|.+|...++.++.. |.+|++. +.++...+.+++.|.... +..- .+.
T Consensus 163 ~pg-~kVlViGaG~iGL~Ai~~Ak~l------GA~V~a~-D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~ 234 (509)
T PRK09424 163 VPP-AKVLVIGAGVAGLAAIGAAGSL------GAIVRAF-DTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEF 234 (509)
T ss_pred cCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEE-eCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhH
Confidence 346 8999999999999999999888 8876554 445666889999997510 1000 010
Q ss_pred --------hhhhccCCeEEEeecchh--HHHH-HHHHHhcCCCCcEEEEec
Q 012479 173 --------YETISGSDLVLLLISDAA--QADN-YEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 173 --------~eav~~ADvViLavpd~a--~~~v-l~eI~~~Lk~gaiL~~a~ 212 (462)
.+.++++|+||-++.-.. ...+ .++....||+|.+|++.+
T Consensus 235 ~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 235 IKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred HHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 122357999999986322 2344 377778899999887664
No 245
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=95.84 E-value=0.045 Score=54.24 Aligned_cols=65 Identities=28% Similarity=0.315 Sum_probs=42.0
Q ss_pred EEEEcc-cchHHHHHHHHHHhhhhhcCC----cEEEEEecCCchhHHHHHH-------c-CceecCCCcCCHhhhhccCC
Q 012479 114 IGVIGW-GSQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARA-------A-GFTEENGTLGDIYETISGSD 180 (462)
Q Consensus 114 IgIIG~-G~mG~AiA~~Lrds~~~~g~G----~~Vivg~r~~~~s~~~A~~-------~-G~~~~d~~~~~~~eav~~AD 180 (462)
|+|||. |.+|..++..|... | .++++.+....+....+.+ . ..... ...|..+++++||
T Consensus 1 I~IIGagG~vG~~ia~~l~~~------~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~--~~~d~~~~~~~aD 72 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG------SVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVS--ITDDPYEAFKDAD 72 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC------CCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEE--ECCchHHHhCCCC
Confidence 689999 99999999999987 6 4666655443322211111 1 11110 1345578999999
Q ss_pred eEEEee
Q 012479 181 LVLLLI 186 (462)
Q Consensus 181 vViLav 186 (462)
+||++.
T Consensus 73 iVv~t~ 78 (263)
T cd00650 73 VVIITA 78 (263)
T ss_pred EEEECC
Confidence 999955
No 246
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=95.78 E-value=0.024 Score=54.74 Aligned_cols=93 Identities=17% Similarity=0.145 Sum_probs=61.6
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCc--CC----Hhhhhcc
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL--GD----IYETISG 178 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~--~~----~~eav~~ 178 (462)
..++| |+|.|||-+ ..|..+|.-|.+. |..|.+...+............-. .+ .+ ..+.+++
T Consensus 58 ~~l~G-K~vvVIGrS~iVGkPla~lL~~~------~AtVti~~~~~~~~~~~~~~~~hs----~t~~~~~~~~l~~~~~~ 126 (197)
T cd01079 58 NRLYG-KTITIINRSEVVGRPLAALLAND------GARVYSVDINGIQVFTRGESIRHE----KHHVTDEEAMTLDCLSQ 126 (197)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEEecCcccccccccccccc----cccccchhhHHHHHhhh
Confidence 46899 999999977 7899999999888 878877643321111100000000 01 12 6788999
Q ss_pred CCeEEEeecchhHHHHHHHHHhcCCCCcEEEEecc
Q 012479 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (462)
Q Consensus 179 ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~G 213 (462)
||+||.+++..... +. ...+|+|++|++++-
T Consensus 127 ADIVIsAvG~~~~~--i~--~d~ik~GavVIDVGi 157 (197)
T cd01079 127 SDVVITGVPSPNYK--VP--TELLKDGAICINFAS 157 (197)
T ss_pred CCEEEEccCCCCCc--cC--HHHcCCCcEEEEcCC
Confidence 99999999965431 22 245789999998764
No 247
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=95.76 E-value=0.042 Score=51.40 Aligned_cols=77 Identities=17% Similarity=0.198 Sum_probs=51.7
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..++| |++.|||-+ ..|..++.-|.+. |..|.+.... ..+.++.+++||+||.
T Consensus 32 ~~l~G-k~v~VvGrs~~VG~Pla~lL~~~------~atVt~~h~~-------------------T~~l~~~~~~ADIVVs 85 (160)
T PF02882_consen 32 IDLEG-KKVVVVGRSNIVGKPLAMLLLNK------GATVTICHSK-------------------TKNLQEITRRADIVVS 85 (160)
T ss_dssp -STTT--EEEEE-TTTTTHHHHHHHHHHT------T-EEEEE-TT-------------------SSSHHHHHTTSSEEEE
T ss_pred CCCCC-CEEEEECCcCCCChHHHHHHHhC------CCeEEeccCC-------------------CCcccceeeeccEEee
Confidence 35899 999999988 5999999999998 8777765332 1356778899999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEecc
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~G 213 (462)
++.-... ++ ...+|+|++|+|++-
T Consensus 86 a~G~~~~---i~--~~~ik~gavVIDvG~ 109 (160)
T PF02882_consen 86 AVGKPNL---IK--ADWIKPGAVVIDVGI 109 (160)
T ss_dssp -SSSTT----B---GGGS-TTEEEEE--C
T ss_pred eeccccc---cc--cccccCCcEEEecCC
Confidence 9985332 22 346899998888753
No 248
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=95.64 E-value=0.057 Score=60.00 Aligned_cols=75 Identities=12% Similarity=0.222 Sum_probs=55.2
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHh---h-hhccCCeEEEeec
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---E-TISGSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~---e-av~~ADvViLavp 187 (462)
.+|.|+|+|.+|..+++.|++. |+++++- +.+++..+.+++.|...--+...+.+ + -+++||+|+++++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~------g~~vvvI-D~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~ 473 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMAN------KMRITVL-ERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCN 473 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhC------CCCEEEE-ECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeC
Confidence 5799999999999999999998 8887654 45566788888888643211122221 1 2679999999999
Q ss_pred chhHHH
Q 012479 188 DAAQAD 193 (462)
Q Consensus 188 d~a~~~ 193 (462)
+.....
T Consensus 474 d~~~n~ 479 (601)
T PRK03659 474 EPEDTM 479 (601)
T ss_pred CHHHHH
Confidence 976653
No 249
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=95.63 E-value=0.047 Score=52.32 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=30.5
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEec
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r 148 (462)
..|++ ++|.|||+|.+|..++++|... |+ ++.+.++
T Consensus 17 ~kl~~-~~VlviG~GglGs~ia~~La~~------Gv~~i~lvD~ 53 (202)
T TIGR02356 17 QRLLN-SHVLIIGAGGLGSPAALYLAGA------GVGTIVIVDD 53 (202)
T ss_pred HHhcC-CCEEEECCCHHHHHHHHHHHHc------CCCeEEEecC
Confidence 67788 9999999999999999999998 87 5555543
No 250
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=95.61 E-value=0.036 Score=54.09 Aligned_cols=77 Identities=17% Similarity=0.034 Sum_probs=48.0
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCc----------hhHHHHHHcCceec-CC-CcCCHh
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----------RSFAEARAAGFTEE-NG-TLGDIY 173 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~----------~s~~~A~~~G~~~~-d~-~~~~~~ 173 (462)
..++| ++|+|.|+|+.|...|+.|.+. |..++...+.+. +..+..++.+-... .. ...+.+
T Consensus 19 ~~l~g-~~vaIqGfGnVG~~~a~~L~~~------G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~ 91 (217)
T cd05211 19 DSLEG-LTVAVQGLGNVGWGLAKKLAEE------GGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGE 91 (217)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHc------CCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcc
Confidence 46789 9999999999999999999998 886555455544 44444444332210 00 000112
Q ss_pred hh-hccCCeEEEeecch
Q 012479 174 ET-ISGSDLVLLLISDA 189 (462)
Q Consensus 174 ea-v~~ADvViLavpd~ 189 (462)
+. -.+||+++-|.+..
T Consensus 92 ~l~~~~~DVlipaA~~~ 108 (217)
T cd05211 92 AILGLDVDIFAPCALGN 108 (217)
T ss_pred cceeccccEEeeccccC
Confidence 21 13678888777755
No 251
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=95.56 E-value=0.092 Score=50.66 Aligned_cols=83 Identities=17% Similarity=0.135 Sum_probs=55.6
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcC-ceecCCCcCCHhhhhccCCeEEEe
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-FTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G-~~~~d~~~~~~~eav~~ADvViLa 185 (462)
.|+| ++|.|||.|..|..-++.|.+. |.+|+|......+.+....+.| +....+. .. .+-+.++|+||++
T Consensus 6 ~l~g-k~vlVvGgG~va~rk~~~Ll~~------ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~-~~-~~dl~~~~lVi~a 76 (205)
T TIGR01470 6 NLEG-RAVLVVGGGDVALRKARLLLKA------GAQLRVIAEELESELTLLAEQGGITWLARC-FD-ADILEGAFLVIAA 76 (205)
T ss_pred EcCC-CeEEEECcCHHHHHHHHHHHHC------CCEEEEEcCCCCHHHHHHHHcCCEEEEeCC-CC-HHHhCCcEEEEEC
Confidence 4889 9999999999999999999998 8887776554333333333333 3321111 12 3457899999999
Q ss_pred ecchhHH-HHHHHH
Q 012479 186 ISDAAQA-DNYEKI 198 (462)
Q Consensus 186 vpd~a~~-~vl~eI 198 (462)
+.+...- .++...
T Consensus 77 t~d~~ln~~i~~~a 90 (205)
T TIGR01470 77 TDDEELNRRVAHAA 90 (205)
T ss_pred CCCHHHHHHHHHHH
Confidence 9987443 444443
No 252
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=95.56 E-value=0.04 Score=57.24 Aligned_cols=78 Identities=22% Similarity=0.170 Sum_probs=50.4
Q ss_pred EEEEcccchHHHHHHHHHHhhhhhcCC-c-EEEEEecCCchhHHHHHH-c--CceecCCCcCC---HhhhhccCCeEEEe
Q 012479 114 IGVIGWGSQGPAQAQNLRDSLAEAKSD-I-VVKVGLRKGSRSFAEARA-A--GFTEENGTLGD---IYETISGSDLVLLL 185 (462)
Q Consensus 114 IgIIG~G~mG~AiA~~Lrds~~~~g~G-~-~Vivg~r~~~~s~~~A~~-~--G~~~~d~~~~~---~~eav~~ADvViLa 185 (462)
|.|||+|.+|..+++.|.+. + . +|+++.|+..+..+.+.+ . .+....-.+.+ +.++++++|+||.|
T Consensus 1 IlvlG~G~vG~~~~~~L~~~------~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~ 74 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARR------GPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINC 74 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCT------TCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-
T ss_pred CEEEcCcHHHHHHHHHHhcC------CCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEEC
Confidence 78999999999999999987 4 4 788888875554444432 1 22110001223 45688999999999
Q ss_pred ecchhHHHHHHH
Q 012479 186 ISDAAQADNYEK 197 (462)
Q Consensus 186 vpd~a~~~vl~e 197 (462)
+||.....+++.
T Consensus 75 ~gp~~~~~v~~~ 86 (386)
T PF03435_consen 75 AGPFFGEPVARA 86 (386)
T ss_dssp SSGGGHHHHHHH
T ss_pred CccchhHHHHHH
Confidence 999866666654
No 253
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=95.54 E-value=0.07 Score=58.55 Aligned_cols=74 Identities=20% Similarity=0.255 Sum_probs=53.3
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHh---h-hhccCCeEEEeec
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---E-TISGSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~---e-av~~ADvViLavp 187 (462)
..|-|+|+|.+|..+++.|++. |+++++-+ ++++..+.+++.|.....+...+.+ + -+++||.|+++++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~------g~~vvvId-~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~ 490 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAA------GIPLVVIE-TSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIP 490 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHC------CCCEEEEE-CCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcC
Confidence 3799999999999999999998 88876655 4455677788888643212222221 1 2578999999999
Q ss_pred chhHH
Q 012479 188 DAAQA 192 (462)
Q Consensus 188 d~a~~ 192 (462)
++...
T Consensus 491 ~~~~~ 495 (558)
T PRK10669 491 NGYEA 495 (558)
T ss_pred ChHHH
Confidence 87554
No 254
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=95.54 E-value=0.056 Score=56.13 Aligned_cols=77 Identities=18% Similarity=0.252 Sum_probs=49.8
Q ss_pred EEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchh-HHHHHHcCceec-----------CC---CcCCHhhhhcc
Q 012479 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEE-----------NG---TLGDIYETISG 178 (462)
Q Consensus 114 IgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s-~~~A~~~G~~~~-----------d~---~~~~~~eav~~ 178 (462)
|||+|+|.+|..+++.+... .+++++...+.+.+. ...|...|+... +. ...+++++.++
T Consensus 1 VaInG~GrIGr~varav~~~-----~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~ 75 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQ-----DDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEK 75 (333)
T ss_pred CEEECCcHHHHHHHHHHhhC-----CCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhc
Confidence 69999999999999998754 156665555543322 234443332110 00 03468888899
Q ss_pred CCeEEEeecchhHHHHH
Q 012479 179 SDLVLLLISDAAQADNY 195 (462)
Q Consensus 179 ADvViLavpd~a~~~vl 195 (462)
+|+|+.|+|......-.
T Consensus 76 vDiVve~Tp~~~~~~na 92 (333)
T TIGR01546 76 VDIVVDATPGGIGAKNK 92 (333)
T ss_pred CCEEEECCCCCCChhhH
Confidence 99999999987765433
No 255
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.53 E-value=0.033 Score=56.67 Aligned_cols=76 Identities=16% Similarity=0.109 Sum_probs=58.5
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..++| |+|.|||-| ..|..+|.-|.+. |..|.+.... ..++.+.+++||+||.
T Consensus 153 i~l~G-k~vvVvGrs~~VG~Pla~lL~~~------gAtVtv~hs~-------------------t~~l~~~~~~ADIvV~ 206 (285)
T PRK14191 153 IEIKG-KDVVIIGASNIVGKPLAMLMLNA------GASVSVCHIL-------------------TKDLSFYTQNADIVCV 206 (285)
T ss_pred CCCCC-CEEEEECCCchhHHHHHHHHHHC------CCEEEEEeCC-------------------cHHHHHHHHhCCEEEE
Confidence 46889 999999999 9999999999988 8787765321 1245678999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++..... +. ..++|+|++|++++
T Consensus 207 AvG~p~~---i~--~~~vk~GavVIDvG 229 (285)
T PRK14191 207 GVGKPDL---IK--ASMVKKGAVVVDIG 229 (285)
T ss_pred ecCCCCc---CC--HHHcCCCcEEEEee
Confidence 9975432 22 23568999988875
No 256
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=95.53 E-value=0.1 Score=54.96 Aligned_cols=93 Identities=18% Similarity=0.153 Sum_probs=57.1
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc--CceecCCCcCCHh----hhhccCCeEEEe
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGDIY----ETISGSDLVLLL 185 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~--G~~~~d~~~~~~~----eav~~ADvViLa 185 (462)
++|.|+|+|..|..+++.|.+. |+++++..+. ++..+...+. ++....+...+.+ .-++++|.|+++
T Consensus 232 ~~iiIiG~G~~g~~l~~~L~~~------~~~v~vid~~-~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~ 304 (453)
T PRK09496 232 KRVMIVGGGNIGYYLAKLLEKE------GYSVKLIERD-PERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIAL 304 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCeEEEEECC-HHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEEC
Confidence 8899999999999999999998 8888766554 3344444443 3321111112222 236789999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
+++...--+...++..+.+..+++-+
T Consensus 305 ~~~~~~n~~~~~~~~~~~~~~ii~~~ 330 (453)
T PRK09496 305 TNDDEANILSSLLAKRLGAKKVIALV 330 (453)
T ss_pred CCCcHHHHHHHHHHHHhCCCeEEEEE
Confidence 98764433333333444444454433
No 257
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.53 E-value=0.038 Score=58.31 Aligned_cols=67 Identities=18% Similarity=0.144 Sum_probs=43.0
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecch
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~ 189 (462)
++|.|||+|.+|.++|+.|++. |.+|++.++... ..... +... +....+.+...+++|+||.+.+..
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~------G~~V~g~D~~~~-~~~~~---~~~~-~~~~~~~~~~~~~~dlvV~s~gi~ 70 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQK------GVYVIGVDKSLE-ALQSC---PYIH-ERYLENAEEFPEQVDLVVRSPGIK 70 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHC------CCEEEEEeCCcc-ccchh---HHHh-hhhcCCcHHHhcCCCEEEECCCCC
Confidence 8999999999999999999999 988766554322 22111 1110 000122333457899999887544
No 258
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.49 E-value=0.042 Score=55.76 Aligned_cols=76 Identities=17% Similarity=0.188 Sum_probs=58.5
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..++| +++.|||.+ ..|..+|.-|... |..|.+..++ ..++.+.+++||+||.
T Consensus 148 i~l~G-k~V~ViGrs~~vGrpla~lL~~~------~atVtv~hs~-------------------t~~L~~~~~~ADIvI~ 201 (279)
T PRK14178 148 ISIAG-KRAVVVGRSIDVGRPMAALLLNA------DATVTICHSK-------------------TENLKAELRQADILVS 201 (279)
T ss_pred CCCCC-CEEEEECCCccccHHHHHHHHhC------CCeeEEEecC-------------------hhHHHHHHhhCCEEEE
Confidence 46899 999999999 9999999999877 7777776532 1356788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
+++-. .++. ..++|+|++|+|++
T Consensus 202 Avgk~---~lv~--~~~vk~GavVIDVg 224 (279)
T PRK14178 202 AAGKA---GFIT--PDMVKPGATVIDVG 224 (279)
T ss_pred CCCcc---cccC--HHHcCCCcEEEEee
Confidence 99733 2333 12369999998875
No 259
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=95.39 E-value=0.051 Score=55.76 Aligned_cols=68 Identities=19% Similarity=0.189 Sum_probs=42.2
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHHHH----cCceecCC-C-cCCHhhhhccCCeEE
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA----AGFTEENG-T-LGDIYETISGSDLVL 183 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A~~----~G~~~~d~-~-~~~~~eav~~ADvVi 183 (462)
+||+|||.|.+|.++|..|... |+ ++++.+.+.......+.+ ..+..... . ..+.+ .+++||+||
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~------~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~-~~~~adivv 76 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAK------GLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYS-VTANSKVVI 76 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHH-HhCCCCEEE
Confidence 6999999999999999999887 65 555555443322222222 21110000 1 24555 489999999
Q ss_pred Eee
Q 012479 184 LLI 186 (462)
Q Consensus 184 Lav 186 (462)
++.
T Consensus 77 ita 79 (312)
T cd05293 77 VTA 79 (312)
T ss_pred ECC
Confidence 954
No 260
>PRK05442 malate dehydrogenase; Provisional
Probab=95.33 E-value=0.14 Score=52.88 Aligned_cols=69 Identities=16% Similarity=0.172 Sum_probs=42.8
Q ss_pred CCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCc-------EEEEEecCCc------hhHHHHHHc-----CceecCCCc
Q 012479 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGS------RSFAEARAA-----GFTEENGTL 169 (462)
Q Consensus 109 ~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~-------~Vivg~r~~~------~s~~~A~~~-----G~~~~d~~~ 169 (462)
|...||+|||. |.+|.++|..|... ++ +++..+.... ..++..... .... .
T Consensus 2 ~~~~KV~IiGaaG~VG~~~a~~l~~~------~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i----~ 71 (326)
T PRK05442 2 KAPVRVAVTGAAGQIGYSLLFRIASG------DMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVI----T 71 (326)
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHhh------hhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEE----e
Confidence 34579999998 99999999988765 33 4444443211 122222211 1111 2
Q ss_pred CCHhhhhccCCeEEEeec
Q 012479 170 GDIYETISGSDLVLLLIS 187 (462)
Q Consensus 170 ~~~~eav~~ADvViLavp 187 (462)
.+..+.+++||+||++--
T Consensus 72 ~~~y~~~~daDiVVitaG 89 (326)
T PRK05442 72 DDPNVAFKDADVALLVGA 89 (326)
T ss_pred cChHHHhCCCCEEEEeCC
Confidence 345678999999998764
No 261
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=95.27 E-value=0.11 Score=50.06 Aligned_cols=102 Identities=16% Similarity=0.167 Sum_probs=59.6
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecC---Cc---------------hhHHHHHH----cC
Q 012479 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK---GS---------------RSFAEARA----AG 161 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~---~~---------------~s~~~A~~----~G 161 (462)
...|+. ++|+|||+|.+|..+|.+|..+ |+ ++++.++. .+ +....++. ..
T Consensus 16 q~~L~~-~~V~IvG~GglGs~ia~~La~~------Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp 88 (200)
T TIGR02354 16 VQKLEQ-ATVAICGLGGLGSNVAINLARA------GIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINP 88 (200)
T ss_pred HHHHhC-CcEEEECcCHHHHHHHHHHHHc------CCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCC
Confidence 467788 9999999999999999999998 87 45555433 00 00000000 00
Q ss_pred -ceec--CCC--cCCHhhhhccCCeEEEeecchhHHH-HHHHHHhcCCCCcEEEEeccc
Q 012479 162 -FTEE--NGT--LGDIYETISGSDLVLLLISDAAQAD-NYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 162 -~~~~--d~~--~~~~~eav~~ADvViLavpd~a~~~-vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
.... +.. ..+..+.++++|+||-++-+..... +++++...++...+++ .+|+
T Consensus 89 ~~~i~~~~~~i~~~~~~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~~~ii~-~~g~ 146 (200)
T TIGR02354 89 YTEIEAYDEKITEENIDKFFKDADIVCEAFDNAEAKAMLVNAVLEKYKDKYLIA-ASGL 146 (200)
T ss_pred CCEEEEeeeeCCHhHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHcCCCcEEE-Eecc
Confidence 1100 000 1123456888999999954434443 4566777665544444 5565
No 262
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=95.25 E-value=0.091 Score=58.71 Aligned_cols=75 Identities=15% Similarity=0.191 Sum_probs=55.0
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHh----hhhccCCeEEEeec
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY----ETISGSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~----eav~~ADvViLavp 187 (462)
++|-|+|+|.+|..+++.|++. |+++++- +.+++..+.+++.|....-+...+.+ .-+++||+|+++++
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~------g~~vvvI-D~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~ 473 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSS------GVKMTVL-DHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAID 473 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhC------CCCEEEE-ECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeC
Confidence 6899999999999999999998 8887654 55566677888888743211122221 23568999999999
Q ss_pred chhHHH
Q 012479 188 DAAQAD 193 (462)
Q Consensus 188 d~a~~~ 193 (462)
|.....
T Consensus 474 d~~~n~ 479 (621)
T PRK03562 474 DPQTSL 479 (621)
T ss_pred CHHHHH
Confidence 876653
No 263
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=95.19 E-value=0.049 Score=55.02 Aligned_cols=78 Identities=17% Similarity=0.117 Sum_probs=50.3
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcE-EEEEecCC---chhHHHHHHc---C--ceecCCCcC---CHhh
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKG---SRSFAEARAA---G--FTEENGTLG---DIYE 174 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~-Vivg~r~~---~~s~~~A~~~---G--~~~~d~~~~---~~~e 174 (462)
.++| +++.|+|.|-+|.+++..|.+. |.+ |.+.+|+. ++..+.+++. + ....-.... +..+
T Consensus 123 ~~~~-k~vlI~GAGGagrAia~~La~~------G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~ 195 (289)
T PRK12548 123 DVKG-KKLTVIGAGGAATAIQVQCALD------GAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKA 195 (289)
T ss_pred CcCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHh
Confidence 3677 8999999999999999999988 885 88888764 3333333322 1 010000011 2234
Q ss_pred hhccCCeEEEeecchhH
Q 012479 175 TISGSDLVLLLISDAAQ 191 (462)
Q Consensus 175 av~~ADvViLavpd~a~ 191 (462)
.++.+|+||.+||....
T Consensus 196 ~~~~~DilINaTp~Gm~ 212 (289)
T PRK12548 196 EIASSDILVNATLVGMK 212 (289)
T ss_pred hhccCCEEEEeCCCCCC
Confidence 56678999999987543
No 264
>PTZ00325 malate dehydrogenase; Provisional
Probab=95.16 E-value=0.035 Score=57.33 Aligned_cols=76 Identities=17% Similarity=0.139 Sum_probs=45.7
Q ss_pred ccccCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCc--EEEEEecCC--chhHHHHHHc-CceecCCCc-CCHhhhhc
Q 012479 105 PDAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKG--SRSFAEARAA-GFTEENGTL-GDIYETIS 177 (462)
Q Consensus 105 ~~~l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~--~~s~~~A~~~-G~~~~d~~~-~~~~eav~ 177 (462)
|..+|. +||+|||. |.+|.++|..|... ++ ++++.+... ...++..... .+...+.+. .+..++++
T Consensus 3 ~~~~~~-~KI~IiGaaG~VGs~~a~~l~~~------~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~ 75 (321)
T PTZ00325 3 PSALKM-FKVAVLGAAGGIGQPLSLLLKQN------PHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALR 75 (321)
T ss_pred CcCCCC-CEEEEECCCCHHHHHHHHHHhcC------CCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhC
Confidence 456777 99999999 99999999999865 43 555554421 1111211101 111101011 12267899
Q ss_pred cCCeEEEeec
Q 012479 178 GSDLVLLLIS 187 (462)
Q Consensus 178 ~ADvViLavp 187 (462)
+||+||++.-
T Consensus 76 gaDvVVitaG 85 (321)
T PTZ00325 76 GADLVLICAG 85 (321)
T ss_pred CCCEEEECCC
Confidence 9999998764
No 265
>PF10728 DUF2520: Domain of unknown function (DUF2520); InterPro: IPR018931 This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases. ; PDB: 3D1L_A 2I76_A 3DFU_A.
Probab=95.09 E-value=0.24 Score=44.85 Aligned_cols=93 Identities=15% Similarity=0.221 Sum_probs=61.7
Q ss_pred EeeccCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhH-HhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 012479 263 FAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGIL-LGAVHGIVESLFRRFTENGMNEDLAYKNTVEC 341 (462)
Q Consensus 263 iav~qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL-~G~~paliea~~d~~v~~G~~~e~A~~~~~e~ 341 (462)
++++. +.++++.++.++..+|.. ++.. .+..--+||..+++ |+.+.+++....+.+.++|+++++|++.-.--
T Consensus 4 ~~iEg--d~~~~~~l~~l~~~lg~~-~~~i---~~~~r~~yHaAav~asNf~~~L~~~a~~ll~~~gi~~~~a~~~L~PL 77 (132)
T PF10728_consen 4 FAIEG--DEEALEVLQELAKELGGR-PFEI---DSEQRALYHAAAVFASNFLVALYALAAELLEQAGIDFEEALEALLPL 77 (132)
T ss_dssp EEEEE--SHHHHHHHHHHHHHTTSE-EEE-----GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SHHH--HHHHHH
T ss_pred EEEec--CHHHHHHHHHHHHHhCCc-eEEe---CHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCCchhHHHHHHHH
Confidence 34444 789999999999999985 3333 23334489999986 99999999999999999999999988754444
Q ss_pred HHHHHHHHHHHhcHHHHHHhcCCc
Q 012479 342 ITGIISKIISTQGMLAVYNSFSGE 365 (462)
Q Consensus 342 i~Gli~~li~e~G~~~m~~~vs~~ 365 (462)
+.+ ..+=+.+.|. .+.++.|
T Consensus 78 i~~-t~~n~~~~g~---~~alTGP 97 (132)
T PF10728_consen 78 IRE-TLENILQLGP---ADALTGP 97 (132)
T ss_dssp HHH-HHHHHHHS-H---HHH--SC
T ss_pred HHH-HHHHHHhcCc---hhccCCC
Confidence 443 3444445544 2445533
No 266
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=95.08 E-value=0.029 Score=52.02 Aligned_cols=100 Identities=17% Similarity=0.133 Sum_probs=62.4
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCC-----------------
Q 012479 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENG----------------- 167 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~----------------- 167 (462)
+..+.. .+|.|+|.|+.|..-+.-+..- |.++++.+.. ....+.....+.....-
T Consensus 15 ~~~~~p-~~vvv~G~G~vg~gA~~~~~~l------Ga~v~~~d~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 86 (168)
T PF01262_consen 15 PGGVPP-AKVVVTGAGRVGQGAAEIAKGL------GAEVVVPDER-PERLRQLESLGAYFIEVDYEDHLERKDFDKADYY 86 (168)
T ss_dssp TTEE-T--EEEEESTSHHHHHHHHHHHHT------T-EEEEEESS-HHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCH
T ss_pred CCCCCC-eEEEEECCCHHHHHHHHHHhHC------CCEEEeccCC-HHHHHhhhcccCceEEEcccccccccccchhhhh
Confidence 344555 7999999999999998888887 9988776554 33344444544321000
Q ss_pred -----CcCCHhhhhccCCeEEEe--ecchhHHHHHH-HHHhcCCCCcEEEEec
Q 012479 168 -----TLGDIYETISGSDLVLLL--ISDAAQADNYE-KIFSCMKPNSILGLSH 212 (462)
Q Consensus 168 -----~~~~~~eav~~ADvViLa--vpd~a~~~vl~-eI~~~Lk~gaiL~~a~ 212 (462)
......+.++.+|+||.+ .|......++. +....|+++.+|+|.+
T Consensus 87 ~~~~~~~~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 87 EHPESYESNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHCCHHHHHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHHhHHHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 001245678999999963 35556666664 6777899999998774
No 267
>PLN02602 lactate dehydrogenase
Probab=95.04 E-value=0.17 Score=52.93 Aligned_cols=68 Identities=24% Similarity=0.278 Sum_probs=41.4
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHHHH----cCceec-CCCc-CCHhhhhccCCeEE
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA----AGFTEE-NGTL-GDIYETISGSDLVL 183 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A~~----~G~~~~-d~~~-~~~~eav~~ADvVi 183 (462)
+||+|||.|++|.++|..|... ++ ++++.+.........+.+ ..+... .-.. .+. +.+++||+||
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~------~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy-~~~~daDiVV 110 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQ------DLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDY-AVTAGSDLCI 110 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhC------CCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH-HHhCCCCEEE
Confidence 5999999999999999999877 65 455555433322222221 111100 0001 244 4489999999
Q ss_pred Eee
Q 012479 184 LLI 186 (462)
Q Consensus 184 Lav 186 (462)
++.
T Consensus 111 itA 113 (350)
T PLN02602 111 VTA 113 (350)
T ss_pred ECC
Confidence 984
No 268
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=95.02 E-value=0.14 Score=53.23 Aligned_cols=88 Identities=15% Similarity=0.201 Sum_probs=55.6
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCC---------------------chhH---HHHHH
Q 012479 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG---------------------SRSF---AEARA 159 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~---------------------~~s~---~~A~~ 159 (462)
.+.|++ ++|.|||+|..|..+|.+|... |+ ++.+.++.. ++.. +..++
T Consensus 19 Q~~L~~-~~VlIiG~GglGs~va~~La~a------Gvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~ 91 (338)
T PRK12475 19 QRKIRE-KHVLIVGAGALGAANAEALVRA------GIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRK 91 (338)
T ss_pred HHhhcC-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHH
Confidence 577888 9999999999999999999998 87 555544421 0111 11111
Q ss_pred --cCceec----CCCcCCHhhhhccCCeEEEeecchhHHHHHHHHH
Q 012479 160 --AGFTEE----NGTLGDIYETISGSDLVLLLISDAAQADNYEKIF 199 (462)
Q Consensus 160 --~G~~~~----d~~~~~~~eav~~ADvViLavpd~a~~~vl~eI~ 199 (462)
.++... +.+..+.+++++++|+||.++-+.....++.++.
T Consensus 92 inp~v~i~~~~~~~~~~~~~~~~~~~DlVid~~D~~~~r~~in~~~ 137 (338)
T PRK12475 92 INSEVEIVPVVTDVTVEELEELVKEVDLIIDATDNFDTRLLINDLS 137 (338)
T ss_pred HCCCcEEEEEeccCCHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHH
Confidence 122110 1111235678899999999996665555666654
No 269
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=94.98 E-value=0.11 Score=54.25 Aligned_cols=86 Identities=12% Similarity=0.048 Sum_probs=60.4
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEE-ecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeec---
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVG-LRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLIS--- 187 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg-~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavp--- 187 (462)
.||+|||+ .+|..++..+++. ..+++++.. ++..++..+.|++.|+.. ..+.+|++++.|++++++|
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~----~~~~eLvaV~d~~~erA~~~A~~~gi~~----y~~~eell~d~Di~~V~ipt~~ 74 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAA----PERFELAGILAQGSERSRALAHRLGVPL----YCEVEELPDDIDIACVVVRSAI 74 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhC----CCCcEEEEEEcCCHHHHHHHHHHhCCCc----cCCHHHHhcCCCEEEEEeCCCC
Confidence 68999999 5799999999876 003455433 444456677888888763 6899999988888888875
Q ss_pred -chhHHHHHHHHHhcCCCCcEEE
Q 012479 188 -DAAQADNYEKIFSCMKPNSILG 209 (462)
Q Consensus 188 -d~a~~~vl~eI~~~Lk~gaiL~ 209 (462)
+..+.++..+. |+.|+-|.
T Consensus 75 P~~~H~e~a~~a---L~aGkHVL 94 (343)
T TIGR01761 75 VGGQGSALARAL---LARGIHVL 94 (343)
T ss_pred CCccHHHHHHHH---HhCCCeEE
Confidence 45777766553 34565443
No 270
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=94.94 E-value=0.077 Score=56.66 Aligned_cols=71 Identities=23% Similarity=0.169 Sum_probs=50.1
Q ss_pred ccccCCCCEEEEEcccchHHH-HHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEE
Q 012479 105 PDAFNGINQIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~A-iA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvVi 183 (462)
++.+++ ++|.|||+|..|.+ +|+-|++. |.+|.+.+.......+..++.|+... .....+.+.++|+||
T Consensus 2 ~~~~~~-~~v~viG~G~sG~s~~a~~L~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~---~~~~~~~~~~~d~vv 71 (461)
T PRK00421 2 PELRRI-KRIHFVGIGGIGMSGLAEVLLNL------GYKVSGSDLKESAVTQRLLELGAIIF---IGHDAENIKDADVVV 71 (461)
T ss_pred CCcCCC-CEEEEEEEchhhHHHHHHHHHhC------CCeEEEECCCCChHHHHHHHCCCEEe---CCCCHHHCCCCCEEE
Confidence 355677 89999999999999 79999999 99987766543333333455677641 122345567899888
Q ss_pred Ee
Q 012479 184 LL 185 (462)
Q Consensus 184 La 185 (462)
+.
T Consensus 72 ~s 73 (461)
T PRK00421 72 YS 73 (461)
T ss_pred EC
Confidence 75
No 271
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=94.93 E-value=0.06 Score=52.84 Aligned_cols=32 Identities=22% Similarity=0.436 Sum_probs=29.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEE
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK 144 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vi 144 (462)
..++| ++|+|.|+|++|...++.|.+. |.+|+
T Consensus 27 ~~l~~-~~v~I~G~G~VG~~~a~~L~~~------g~~vv 58 (227)
T cd01076 27 IGLAG-ARVAIQGFGNVGSHAARFLHEA------GAKVV 58 (227)
T ss_pred CCccC-CEEEEECCCHHHHHHHHHHHHC------CCEEE
Confidence 56788 9999999999999999999988 88876
No 272
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.91 E-value=0.081 Score=54.55 Aligned_cols=66 Identities=14% Similarity=0.146 Sum_probs=41.6
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCCc-------EEEEEecCCch------hHHHHHHc-----CceecCCCcCCH
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGSR------SFAEARAA-----GFTEENGTLGDI 172 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~-------~Vivg~r~~~~------s~~~A~~~-----G~~~~d~~~~~~ 172 (462)
+||+|||. |.+|.++|..|... ++ ++++.+..... .++..... .... ..+.
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~------~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i----~~~~ 72 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASG------EMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVI----TDDP 72 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc------cccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEE----ecCc
Confidence 69999999 99999999999876 54 45444442211 11211111 1111 2345
Q ss_pred hhhhccCCeEEEeec
Q 012479 173 YETISGSDLVLLLIS 187 (462)
Q Consensus 173 ~eav~~ADvViLavp 187 (462)
.+.+++||+||++--
T Consensus 73 ~~~~~daDivvitaG 87 (322)
T cd01338 73 NVAFKDADWALLVGA 87 (322)
T ss_pred HHHhCCCCEEEEeCC
Confidence 678999999999863
No 273
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=94.87 E-value=0.081 Score=53.67 Aligned_cols=78 Identities=15% Similarity=0.179 Sum_probs=51.7
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCc---hhHHHHHHcCceecC-CCcCC------Hhhh
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGS---RSFAEARAAGFTEEN-GTLGD------IYET 175 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~---~s~~~A~~~G~~~~d-~~~~~------~~ea 175 (462)
.++| +++.|||.|-.+.|++..|... |. ++.|.+|..+ +..+.++..+..... -...+ ..+.
T Consensus 121 ~~~~-k~vlvlGaGGaarAi~~~l~~~------g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~ 193 (288)
T PRK12749 121 DIKG-KTMVLLGAGGASTAIGAQGAIE------GLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEA 193 (288)
T ss_pred CcCC-CEEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhh
Confidence 4678 8999999999999999999887 76 7888888742 444444433210000 00112 2235
Q ss_pred hccCCeEEEeecchhH
Q 012479 176 ISGSDLVLLLISDAAQ 191 (462)
Q Consensus 176 v~~ADvViLavpd~a~ 191 (462)
+.++|+||.+||....
T Consensus 194 ~~~aDivINaTp~Gm~ 209 (288)
T PRK12749 194 LASADILTNGTKVGMK 209 (288)
T ss_pred cccCCEEEECCCCCCC
Confidence 6789999999997543
No 274
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.85 E-value=0.084 Score=53.67 Aligned_cols=76 Identities=16% Similarity=0.142 Sum_probs=58.2
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..++| |++.|||-+ ..|..+|.-|.+. +..|.+... . +.+..+.+++||+||.
T Consensus 153 i~l~G-k~vvViGrS~~VG~Pla~lL~~~------~AtVti~hs---~----------------T~~l~~~~~~ADIvV~ 206 (281)
T PRK14183 153 IDVKG-KDVCVVGASNIVGKPMAALLLNA------NATVDICHI---F----------------TKDLKAHTKKADIVIV 206 (281)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCC---C----------------CcCHHHHHhhCCEEEE
Confidence 46899 999999998 8999999999888 777766532 1 1356678999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++.-... +. ..++|+|++|++++
T Consensus 207 AvGkp~~---i~--~~~vk~gavvIDvG 229 (281)
T PRK14183 207 GVGKPNL---IT--EDMVKEGAIVIDIG 229 (281)
T ss_pred ecCcccc---cC--HHHcCCCcEEEEee
Confidence 9975332 22 34578999988864
No 275
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=94.83 E-value=0.26 Score=53.13 Aligned_cols=71 Identities=17% Similarity=0.052 Sum_probs=42.3
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcC--Cc--EEEEEecCCchhHHHHHH--cC-------ceecCCCcCCHhhhhc
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKS--DI--VVKVGLRKGSRSFAEARA--AG-------FTEENGTLGDIYETIS 177 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~--G~--~Vivg~r~~~~s~~~A~~--~G-------~~~~d~~~~~~~eav~ 177 (462)
-||+|||. |++|.++|-.|... +=+|. ++ +++..++..+.....+.+ ++ +.. ..+..+.++
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~-~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i----~~~~ye~~k 175 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASG-EVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSI----GIDPYEVFQ 175 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc-ccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEE----ecCCHHHhC
Confidence 58999999 99999999988753 00110 22 454444443333322222 11 111 134567899
Q ss_pred cCCeEEEeec
Q 012479 178 GSDLVLLLIS 187 (462)
Q Consensus 178 ~ADvViLavp 187 (462)
+||+||+.--
T Consensus 176 daDiVVitAG 185 (444)
T PLN00112 176 DAEWALLIGA 185 (444)
T ss_pred cCCEEEECCC
Confidence 9999999764
No 276
>PRK06270 homoserine dehydrogenase; Provisional
Probab=94.80 E-value=0.12 Score=53.65 Aligned_cols=99 Identities=15% Similarity=0.140 Sum_probs=54.2
Q ss_pred CEEEEEcccchHHHHHHHHHHhh---h-hhcCCcEEEEEecCC----------chh-HHHHHHcCceec-C--CCcCCHh
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSL---A-EAKSDIVVKVGLRKG----------SRS-FAEARAAGFTEE-N--GTLGDIY 173 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~---~-~~g~G~~Vivg~r~~----------~~s-~~~A~~~G~~~~-d--~~~~~~~ 173 (462)
.+|+|||+|.+|..+++.|++.- . ..|.+++++...++. ... .+.+.+.|.... + ....+.+
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGL 82 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHH
Confidence 58999999999999999987641 0 012234543322211 111 122223332110 0 0123677
Q ss_pred hhh--ccCCeEEEeecchhHH-HH-HHHHHhcCCCCcEEEE
Q 012479 174 ETI--SGSDLVLLLISDAAQA-DN-YEKIFSCMKPNSILGL 210 (462)
Q Consensus 174 eav--~~ADvViLavpd~a~~-~v-l~eI~~~Lk~gaiL~~ 210 (462)
+++ .+.|+|+.++|+..+. +. ++-+...|+.|..|+.
T Consensus 83 ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVt 123 (341)
T PRK06270 83 EVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVT 123 (341)
T ss_pred HHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEc
Confidence 777 4689999999986652 22 2233455667775543
No 277
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=94.71 E-value=0.2 Score=52.25 Aligned_cols=92 Identities=20% Similarity=0.217 Sum_probs=57.4
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-CCCcCCHhhhhc-cCCeEEEe
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-GSDLVLLL 185 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~eav~-~ADvViLa 185 (462)
-.| ++|+|+|+|-.|+.-.|-.+.. |.+|+...++ ++..+.|++.|.... +....+..+.++ .+|+||.+
T Consensus 165 ~pG-~~V~I~G~GGlGh~avQ~Aka~------ga~Via~~~~-~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~t 236 (339)
T COG1064 165 KPG-KWVAVVGAGGLGHMAVQYAKAM------GAEVIAITRS-EEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDT 236 (339)
T ss_pred CCC-CEEEEECCcHHHHHHHHHHHHc------CCeEEEEeCC-hHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEEC
Confidence 346 8999999998887777777666 8787766555 455788999886421 111112223333 39999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 186 ISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
+++... +.-.+.|+++-.++.+
T Consensus 237 v~~~~~----~~~l~~l~~~G~~v~v 258 (339)
T COG1064 237 VGPATL----EPSLKALRRGGTLVLV 258 (339)
T ss_pred CChhhH----HHHHHHHhcCCEEEEE
Confidence 993322 3333445666555544
No 278
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.71 E-value=0.12 Score=52.59 Aligned_cols=76 Identities=13% Similarity=0.121 Sum_probs=58.1
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~-mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..++| +++.|||.+. .|..++.-|... |..|.+.... +.+..+.+++||+||.
T Consensus 160 i~l~G-k~vvViGrs~iVGkPla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvv~ 213 (287)
T PRK14176 160 VDIEG-KNAVIVGHSNVVGKPMAAMLLNR------NATVSVCHVF-------------------TDDLKKYTLDADILVV 213 (287)
T ss_pred CCCCC-CEEEEECCCcccHHHHHHHHHHC------CCEEEEEecc-------------------CCCHHHHHhhCCEEEE
Confidence 46899 9999999998 999999999988 7777765421 2467788899999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++--.. ++. ...+++|++|++++
T Consensus 214 AvG~p~---~i~--~~~vk~gavVIDvG 236 (287)
T PRK14176 214 ATGVKH---LIK--ADMVKEGAVIFDVG 236 (287)
T ss_pred ccCCcc---ccC--HHHcCCCcEEEEec
Confidence 775322 222 23678999988875
No 279
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=94.70 E-value=0.12 Score=52.51 Aligned_cols=68 Identities=21% Similarity=0.243 Sum_probs=42.2
Q ss_pred EEEEcccchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHHHHc--Ccee-cCC--CcCCHhhhhccCCeEEEee
Q 012479 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAA--GFTE-ENG--TLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 114 IgIIG~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A~~~--G~~~-~d~--~~~~~~eav~~ADvViLav 186 (462)
|+|||.|.+|.++|..|... |+ ++++.+...++....+.+. .... ... ...+..+.+++||+||++.
T Consensus 1 i~iiGaG~VG~~~a~~l~~~------~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l~~aDiVIita 74 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAK------GLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITA 74 (300)
T ss_pred CEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHHhCCCCEEEEcC
Confidence 68999999999999999987 75 5665555443322222211 0000 000 0112256899999999988
Q ss_pred c
Q 012479 187 S 187 (462)
Q Consensus 187 p 187 (462)
.
T Consensus 75 g 75 (300)
T cd00300 75 G 75 (300)
T ss_pred C
Confidence 6
No 280
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=94.64 E-value=0.26 Score=50.93 Aligned_cols=70 Identities=17% Similarity=0.085 Sum_probs=42.3
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCCc-------EEEEEecCC--chhHHHHHH--cCc-eecCC--CcCCHhhhh
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKG--SRSFAEARA--AGF-TEENG--TLGDIYETI 176 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~-------~Vivg~r~~--~~s~~~A~~--~G~-~~~d~--~~~~~~eav 176 (462)
.||+|||. |.+|.++|..|... ++ ++++.+... +.....+.+ +.. ..... ...+..+.+
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~------~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~ 77 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASG------ELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAF 77 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhC------CcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHh
Confidence 58999998 99999999999877 54 455544432 112222221 111 00000 013456789
Q ss_pred ccCCeEEEeec
Q 012479 177 SGSDLVLLLIS 187 (462)
Q Consensus 177 ~~ADvViLavp 187 (462)
++||+||++--
T Consensus 78 ~daDvVVitAG 88 (323)
T TIGR01759 78 KDVDAALLVGA 88 (323)
T ss_pred CCCCEEEEeCC
Confidence 99999999763
No 281
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.56 E-value=0.11 Score=52.96 Aligned_cols=76 Identities=16% Similarity=0.209 Sum_probs=58.0
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..++| |++.|||-+ ..|..++.-|.+. +-.|.+...+ +.++++.+++||+||.
T Consensus 151 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~aTVtichs~-------------------T~~l~~~~~~ADIvIs 204 (287)
T PRK14173 151 IPLAG-KEVVVVGRSNIVGKPLAALLLRE------DATVTLAHSK-------------------TQDLPAVTRRADVLVV 204 (287)
T ss_pred CCCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 46899 999999966 7899999999887 7777665321 2367788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++.-.. ++. ..++|+|++|+|++
T Consensus 205 AvGkp~---~i~--~~~vk~GavVIDVG 227 (287)
T PRK14173 205 AVGRPH---LIT--PEMVRPGAVVVDVG 227 (287)
T ss_pred ecCCcC---ccC--HHHcCCCCEEEEcc
Confidence 998543 232 34578999988864
No 282
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=94.55 E-value=0.17 Score=51.80 Aligned_cols=67 Identities=25% Similarity=0.351 Sum_probs=42.1
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCCc--EEEEEecCC--chhHHHHH-------HcCc--eecCCCcCCHhhhhc
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKG--SRSFAEAR-------AAGF--TEENGTLGDIYETIS 177 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~--~~s~~~A~-------~~G~--~~~d~~~~~~~eav~ 177 (462)
+||+|||. |..|..++..|... |+ +|+..++.. ++....+. ..+. .. . ...+ .+.++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~------g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i-~-~~~d-~~~l~ 71 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKE------DVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEI-K-ISSD-LSDVA 71 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhC------CCCCEEEEEECcccccccccccchhhhchhccCCCcEE-E-ECCC-HHHhC
Confidence 68999998 99999999999987 76 465555532 11111110 1111 11 0 0124 45699
Q ss_pred cCCeEEEeec
Q 012479 178 GSDLVLLLIS 187 (462)
Q Consensus 178 ~ADvViLavp 187 (462)
+||+||++..
T Consensus 72 ~aDiViitag 81 (309)
T cd05294 72 GSDIVIITAG 81 (309)
T ss_pred CCCEEEEecC
Confidence 9999999985
No 283
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=94.55 E-value=0.19 Score=51.99 Aligned_cols=91 Identities=14% Similarity=0.201 Sum_probs=60.0
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH-cCceecCCCcC-CHh----hhh--ccCCeEE
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA-AGFTEENGTLG-DIY----ETI--SGSDLVL 183 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~-~G~~~~d~~~~-~~~----eav--~~ADvVi 183 (462)
.++.|+|.|.+|...++.++.. |...++..+.++...+.|++ .|......... +.. +.- ..+|++|
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~------Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vi 243 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLL------GASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVI 243 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEE
Confidence 4899999999999988888877 76444555666677899988 45432100001 111 122 3589999
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 184 LLISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
-|+- ....+.+....++++-.+++.
T Consensus 244 e~~G---~~~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 244 EAVG---SPPALDQALEALRPGGTVVVV 268 (350)
T ss_pred ECCC---CHHHHHHHHHHhcCCCEEEEE
Confidence 9999 334566666777887766544
No 284
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.51 E-value=0.11 Score=53.09 Aligned_cols=76 Identities=14% Similarity=0.162 Sum_probs=58.4
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..++| |+|.|||-+ ..|..++.-|.+. |..|.+.... +.+..+.+++||+||.
T Consensus 154 i~l~G-k~vvVIGrS~iVGkPla~lL~~~------~atVtv~hs~-------------------T~~l~~~~~~ADIvIs 207 (297)
T PRK14186 154 IDIAG-KKAVVVGRSILVGKPLALMLLAA------NATVTIAHSR-------------------TQDLASITREADILVA 207 (297)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 46899 999999966 7899999999888 7777665321 2357788899999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++.-.. ++. ..++|+|++|++++
T Consensus 208 AvGkp~---~i~--~~~ik~gavVIDvG 230 (297)
T PRK14186 208 AAGRPN---LIG--AEMVKPGAVVVDVG 230 (297)
T ss_pred ccCCcC---ccC--HHHcCCCCEEEEec
Confidence 998543 232 34678999988875
No 285
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.46 E-value=0.12 Score=52.49 Aligned_cols=76 Identities=20% Similarity=0.217 Sum_probs=58.5
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..|+| |++.|||-+ ..|..++.-|.+. |..|.+...+ +.+..+.+++||+||.
T Consensus 154 i~l~G-k~vvViGrS~~VGkPla~lL~~~------~AtVt~chs~-------------------T~~l~~~~~~ADIvIs 207 (278)
T PRK14172 154 IDIEG-KEVVVIGRSNIVGKPVAQLLLNE------NATVTICHSK-------------------TKNLKEVCKKADILVV 207 (278)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 46899 999999966 7899999999988 7777765421 2467788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++.-... +. ..++|+|++|+|++
T Consensus 208 AvGkp~~---i~--~~~ik~gavVIDvG 230 (278)
T PRK14172 208 AIGRPKF---ID--EEYVKEGAIVIDVG 230 (278)
T ss_pred cCCCcCc---cC--HHHcCCCcEEEEee
Confidence 9985432 22 24578999988873
No 286
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=94.43 E-value=0.11 Score=53.22 Aligned_cols=76 Identities=18% Similarity=0.137 Sum_probs=58.5
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..|+| |+|.|||-+ ..|..++.-|.+. |..|.+.... +.+.++.+++||+||.
T Consensus 163 i~l~G-k~vvVIGRS~iVGkPla~lL~~~------~ATVtvchs~-------------------T~nl~~~~~~ADIvv~ 216 (299)
T PLN02516 163 IPIKG-KKAVVVGRSNIVGLPVSLLLLKA------DATVTVVHSR-------------------TPDPESIVREADIVIA 216 (299)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 46889 999999976 7899999999887 7777765321 2467788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++.-. .++. ..++|+|++|++++
T Consensus 217 AvGk~---~~i~--~~~vk~gavVIDvG 239 (299)
T PLN02516 217 AAGQA---MMIK--GDWIKPGAAVIDVG 239 (299)
T ss_pred cCCCc---CccC--HHHcCCCCEEEEee
Confidence 99753 3333 34579999988864
No 287
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.38 E-value=0.13 Score=52.37 Aligned_cols=76 Identities=13% Similarity=0.202 Sum_probs=58.1
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..++| |+|.|||-+ ..|..++.-|.+. +..|.+...+ +.++.+.+++||+||.
T Consensus 152 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~atVtichs~-------------------T~~l~~~~~~ADIvI~ 205 (282)
T PRK14169 152 IDVAG-KRVVIVGRSNIVGRPLAGLMVNH------DATVTIAHSK-------------------TRNLKQLTKEADILVV 205 (282)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHHC------CCEEEEECCC-------------------CCCHHHHHhhCCEEEE
Confidence 46899 999999976 7899999999887 7777765321 2357788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++.-... +. ..++|+|++|+|++
T Consensus 206 AvG~p~~---i~--~~~vk~GavVIDvG 228 (282)
T PRK14169 206 AVGVPHF---IG--ADAVKPGAVVIDVG 228 (282)
T ss_pred ccCCcCc---cC--HHHcCCCcEEEEee
Confidence 9985433 22 24578999988875
No 288
>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....
Probab=94.36 E-value=0.17 Score=43.54 Aligned_cols=83 Identities=17% Similarity=0.177 Sum_probs=57.6
Q ss_pred chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHH---HcCceecCCCcCCHhhhhccCCeEEEeecchhHHH-HHH
Q 012479 121 SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR---AAGFTEENGTLGDIYETISGSDLVLLLISDAAQAD-NYE 196 (462)
Q Consensus 121 ~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~---~~G~~~~d~~~~~~~eav~~ADvViLavpd~a~~~-vl~ 196 (462)
+-+..++..|++. |.+|.+.+..-.. ..... ..++.. +.+.+++++++|+||++++-....+ -++
T Consensus 17 Sp~~~l~~~L~~~------g~~V~~~DP~v~~-~~~~~~~~~~~~~~----~~~~~~~~~~~D~vvl~t~h~~f~~l~~~ 85 (106)
T PF03720_consen 17 SPALELIEELKER------GAEVSVYDPYVDE-EEIKELGKLEGVEV----CDDLEEALKGADAVVLATDHDEFRELDWE 85 (106)
T ss_dssp -HHHHHHHHHHHT------T-EEEEE-TTSHH-HHHHHHCHHHCEEE----ESSHHHHHTTESEEEESS--GGGGCCGHH
T ss_pred CHHHHHHHHHHHC------CCEEEEECCccCh-HHHHhhCCccceEE----ecCHHHHhcCCCEEEEEecCHHHhccCHH
Confidence 5567788888888 9988776554332 22222 246664 5688999999999999999888876 466
Q ss_pred HHHhcCCCCcEEEEeccc
Q 012479 197 KIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 197 eI~~~Lk~gaiL~~a~G~ 214 (462)
++...++++.+|.|.-++
T Consensus 86 ~~~~~~~~~~~iiD~~~~ 103 (106)
T PF03720_consen 86 EIAKLMRKPPVIIDGRNI 103 (106)
T ss_dssp HHHHHSCSSEEEEESSST
T ss_pred HHHHhcCCCCEEEECccc
Confidence 788888888889988764
No 289
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.35 E-value=0.13 Score=52.26 Aligned_cols=76 Identities=13% Similarity=0.151 Sum_probs=58.4
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..++| |++.|||-+ ..|..++.-|.+. +..|.+...+ +.+..+.+++||+||.
T Consensus 155 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~atVt~chs~-------------------T~~l~~~~~~ADIvIs 208 (284)
T PRK14177 155 IDVTG-KNAVVVGRSPILGKPMAMLLTEM------NATVTLCHSK-------------------TQNLPSIVRQADIIVG 208 (284)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 46889 999999966 7899999999987 7777765321 2467788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++.-... +. ..++|+|++|+|++
T Consensus 209 AvGk~~~---i~--~~~ik~gavVIDvG 231 (284)
T PRK14177 209 AVGKPEF---IK--ADWISEGAVLLDAG 231 (284)
T ss_pred eCCCcCc---cC--HHHcCCCCEEEEec
Confidence 9985432 22 34578999988874
No 290
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.34 E-value=0.11 Score=53.26 Aligned_cols=69 Identities=16% Similarity=0.172 Sum_probs=42.5
Q ss_pred EEEEEcccchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchh----HHHHHHcCcee-cCCC-cCCHhhhhccCCeEEE
Q 012479 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRS----FAEARAAGFTE-ENGT-LGDIYETISGSDLVLL 184 (462)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s----~~~A~~~G~~~-~d~~-~~~~~eav~~ADvViL 184 (462)
||+|||.|.+|.++|..|... ++ ++++.+...... ++.....-+.. .+.. ..+..+.+++||+||+
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~------~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvi 74 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALAL------GLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVI 74 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhc------CCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEE
Confidence 799999999999999999887 66 455555433322 22222111110 0000 1123578899999999
Q ss_pred eec
Q 012479 185 LIS 187 (462)
Q Consensus 185 avp 187 (462)
+.-
T Consensus 75 taG 77 (307)
T cd05290 75 TAG 77 (307)
T ss_pred CCC
Confidence 864
No 291
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.34 E-value=0.13 Score=52.37 Aligned_cols=76 Identities=20% Similarity=0.234 Sum_probs=58.1
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..|+| |++.|||-+ ..|..++.-|.+. +..|.+.... +.+..+.+++||+||.
T Consensus 153 i~l~G-k~vvVvGrS~iVGkPla~lL~~~------~atVtichs~-------------------T~~l~~~~~~ADIvI~ 206 (284)
T PRK14170 153 TQIEG-KRAVVIGRSNIVGKPVAQLLLNE------NATVTIAHSR-------------------TKDLPQVAKEADILVV 206 (284)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 46899 999999977 7899999999887 7777665321 2367788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++.-... +. ..++|+|++|+|++
T Consensus 207 AvG~~~~---i~--~~~vk~GavVIDvG 229 (284)
T PRK14170 207 ATGLAKF---VK--KDYIKPGAIVIDVG 229 (284)
T ss_pred ecCCcCc---cC--HHHcCCCCEEEEcc
Confidence 9985432 22 34578999988864
No 292
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.32 E-value=0.1 Score=53.22 Aligned_cols=75 Identities=19% Similarity=0.234 Sum_probs=57.3
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
.++| |++.|||-+ ..|..++.-|.+. +..|.+...+ +.+..+.+++||+||.+
T Consensus 156 ~l~G-K~vvViGrS~iVGkPla~lL~~~------~ATVtichs~-------------------T~~L~~~~~~ADIvV~A 209 (288)
T PRK14171 156 NLTG-KNVVIIGRSNIVGKPLSALLLKE------NCSVTICHSK-------------------THNLSSITSKADIVVAA 209 (288)
T ss_pred CCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEEc
Confidence 5899 999999976 7899999999887 7777665321 23677889999999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 186 ISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
+.-.. ++. ..++|+|++|+|++
T Consensus 210 vGkp~---~i~--~~~vk~GavVIDvG 231 (288)
T PRK14171 210 IGSPL---KLT--AEYFNPESIVIDVG 231 (288)
T ss_pred cCCCC---ccC--HHHcCCCCEEEEee
Confidence 98432 332 34578999988864
No 293
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.29 E-value=0.14 Score=52.23 Aligned_cols=76 Identities=14% Similarity=0.174 Sum_probs=57.9
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..++| |++.|||-+ ..|..+|.-|... +..|.+.... +.++.+.+++||+||.
T Consensus 154 i~l~G-k~vvViGrS~iVG~Pla~lL~~~------~atVt~chs~-------------------t~~l~~~~~~ADIvI~ 207 (284)
T PRK14190 154 IDISG-KHVVVVGRSNIVGKPVGQLLLNE------NATVTYCHSK-------------------TKNLAELTKQADILIV 207 (284)
T ss_pred CCCCC-CEEEEECCCCccHHHHHHHHHHC------CCEEEEEeCC-------------------chhHHHHHHhCCEEEE
Confidence 35899 999999965 8899999999887 7777765321 2467788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++.-.. ++. ..++|+|++|+|++
T Consensus 208 AvG~p~---~i~--~~~ik~gavVIDvG 230 (284)
T PRK14190 208 AVGKPK---LIT--ADMVKEGAVVIDVG 230 (284)
T ss_pred ecCCCC---cCC--HHHcCCCCEEEEee
Confidence 997443 232 24568999998875
No 294
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=94.26 E-value=0.34 Score=49.20 Aligned_cols=98 Identities=16% Similarity=0.157 Sum_probs=49.4
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcE-EEEEecCCchhHHHHHHc-----C----ceecCCCcCCHhhhhccCCe
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAA-----G----FTEENGTLGDIYETISGSDL 181 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~-Vivg~r~~~~s~~~A~~~-----G----~~~~d~~~~~~~eav~~ADv 181 (462)
++|+|||.|.+-.+-..-.+.. +.. .+.+.+.++...+.+++. | .........+...-+.+.|+
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~------~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~Dv 195 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQH------GPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDV 195 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--H------TT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SE
T ss_pred ceEEEEcCCCcchHHHHHHHHh------CCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCE
Confidence 5999999999987755444333 322 345667766555555331 1 11100001122223568899
Q ss_pred EEEeecch----hHHHHHHHHHhcCCCCcEEE--Eeccch
Q 012479 182 VLLLISDA----AQADNYEKIFSCMKPNSILG--LSHGFL 215 (462)
Q Consensus 182 ViLavpd~----a~~~vl~eI~~~Lk~gaiL~--~a~G~~ 215 (462)
|+++.-.. .=.++++.|..+|++|+.|+ ..+|..
T Consensus 196 V~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~~Rsa~GlR 235 (276)
T PF03059_consen 196 VFLAALVGMDAEPKEEILEHLAKHMAPGARLVVRSAHGLR 235 (276)
T ss_dssp EEE-TT-S----SHHHHHHHHHHHS-TTSEEEEEE--GGG
T ss_pred EEEhhhcccccchHHHHHHHHHhhCCCCcEEEEecchhhH
Confidence 99998776 45679999999999999876 667764
No 295
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.26 E-value=0.12 Score=55.60 Aligned_cols=70 Identities=16% Similarity=0.109 Sum_probs=49.2
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcC-CHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG-DIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~-~~~eav~~ADvViL 184 (462)
..+.+ ++|.|+|+|-.|.++|+-|++. |.+|.+.++......+...+.|+... .. ...+-++++|+||.
T Consensus 11 ~~~~~-~~v~v~G~G~sG~a~a~~L~~~------G~~V~~~D~~~~~~~~~l~~~gi~~~---~~~~~~~~~~~~d~vV~ 80 (473)
T PRK00141 11 PQELS-GRVLVAGAGVSGRGIAAMLSEL------GCDVVVADDNETARHKLIEVTGVADI---STAEASDQLDSFSLVVT 80 (473)
T ss_pred ccccC-CeEEEEccCHHHHHHHHHHHHC------CCEEEEECCChHHHHHHHHhcCcEEE---eCCCchhHhcCCCEEEe
Confidence 55677 9999999999999999999999 98877766543332233455687541 11 23345678899887
Q ss_pred e
Q 012479 185 L 185 (462)
Q Consensus 185 a 185 (462)
.
T Consensus 81 S 81 (473)
T PRK00141 81 S 81 (473)
T ss_pred C
Confidence 5
No 296
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.18 E-value=0.16 Score=52.33 Aligned_cols=75 Identities=11% Similarity=0.061 Sum_probs=41.8
Q ss_pred CEEEEEcc-cchHHHHHHHHHHh-hhhhcCCcEEEEEecCCchhHHHHHHcCcee------cCC-CcCCHhhhhccCCeE
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDS-LAEAKSDIVVKVGLRKGSRSFAEARAAGFTE------ENG-TLGDIYETISGSDLV 182 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds-~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~------~d~-~~~~~~eav~~ADvV 182 (462)
.||+|||. |.+|.+++..|... +.+...+.++++.++........+...-+.. .+- ...+..+++++||+|
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiV 82 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVA 82 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEE
Confidence 47999999 99999999999875 0000002356665553221111111111110 000 024556889999999
Q ss_pred EEee
Q 012479 183 LLLI 186 (462)
Q Consensus 183 iLav 186 (462)
|++.
T Consensus 83 I~tA 86 (325)
T cd01336 83 ILVG 86 (325)
T ss_pred EEeC
Confidence 9875
No 297
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=94.12 E-value=0.47 Score=48.34 Aligned_cols=93 Identities=22% Similarity=0.144 Sum_probs=61.9
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecC--CchhHHHHHHcCceecCCCcCCHhh--hhccCCeEEE
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK--GSRSFAEARAAGFTEENGTLGDIYE--TISGSDLVLL 184 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~--~~~s~~~A~~~G~~~~d~~~~~~~e--av~~ADvViL 184 (462)
.| .+|.|+|.|.+|...++.++.. |.+|++..+. +++.++.+++.|....+....+..+ .....|+||-
T Consensus 172 ~g-~~vlI~G~G~vG~~a~q~ak~~------G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid 244 (355)
T cd08230 172 NP-RRALVLGAGPIGLLAALLLRLR------GFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIE 244 (355)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEE
Confidence 67 8999999999999999999988 8887666553 3556778888887531111111111 2245799999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
++.... .+.+....++++-.++..
T Consensus 245 ~~g~~~---~~~~~~~~l~~~G~~v~~ 268 (355)
T cd08230 245 ATGVPP---LAFEALPALAPNGVVILF 268 (355)
T ss_pred CcCCHH---HHHHHHHHccCCcEEEEE
Confidence 987432 445555667777665544
No 298
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.08 E-value=0.15 Score=54.64 Aligned_cols=70 Identities=27% Similarity=0.183 Sum_probs=48.8
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCc----hhHHHHHHcCceecCCCcCCHhhhhccCCeE
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS----RSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~----~s~~~A~~~G~~~~d~~~~~~~eav~~ADvV 182 (462)
.+++ ++|.|||.|..|.+.|..|++. |.+|++.++.+. ...+..++.|+... ..+..+...++|+|
T Consensus 13 ~~~~-~~v~viG~G~~G~~~A~~L~~~------G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~---~~~~~~~~~~~D~V 82 (480)
T PRK01438 13 DWQG-LRVVVAGLGVSGFAAADALLEL------GARVTVVDDGDDERHRALAAILEALGATVR---LGPGPTLPEDTDLV 82 (480)
T ss_pred CcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchhhhHHHHHHHHHcCCEEE---ECCCccccCCCCEE
Confidence 3567 8999999999999999999998 998887765432 11234556687541 11211234578999
Q ss_pred EEee
Q 012479 183 LLLI 186 (462)
Q Consensus 183 iLav 186 (462)
|+++
T Consensus 83 v~s~ 86 (480)
T PRK01438 83 VTSP 86 (480)
T ss_pred EECC
Confidence 9876
No 299
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=94.07 E-value=0.36 Score=44.64 Aligned_cols=69 Identities=22% Similarity=0.231 Sum_probs=48.8
Q ss_pred CCCCEEEEEc--ccchHHHHHHHHHHhhhhhcCCcEEEEEecCC----c--hhH----HHHHHcCc--eecCCCcCCHhh
Q 012479 109 NGINQIGVIG--WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----S--RSF----AEARAAGF--TEENGTLGDIYE 174 (462)
Q Consensus 109 ~gikkIgIIG--~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~----~--~s~----~~A~~~G~--~~~d~~~~~~~e 174 (462)
|| +||++|| .+++..|++..+..- |.++.+....+ . ..+ +.+.+.|. .. +.+.+|
T Consensus 1 ~g-l~i~~vGD~~~rv~~Sl~~~~~~~------g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~----~~~~~e 69 (158)
T PF00185_consen 1 KG-LKIAYVGDGHNRVAHSLIELLAKF------GMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITI----TDDIEE 69 (158)
T ss_dssp TT-EEEEEESSTTSHHHHHHHHHHHHT------TSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEE----ESSHHH
T ss_pred CC-CEEEEECCCCChHHHHHHHHHHHc------CCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEE----EeCHHH
Confidence 57 8999999 389999999999988 98866654443 1 122 22333443 32 578999
Q ss_pred hhccCCeEEEeecc
Q 012479 175 TISGSDLVLLLISD 188 (462)
Q Consensus 175 av~~ADvViLavpd 188 (462)
++++||+|+...-.
T Consensus 70 ~l~~aDvvy~~~~~ 83 (158)
T PF00185_consen 70 ALKGADVVYTDRWQ 83 (158)
T ss_dssp HHTT-SEEEEESSS
T ss_pred hcCCCCEEEEcCcc
Confidence 99999999877655
No 300
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.04 E-value=0.12 Score=55.19 Aligned_cols=71 Identities=14% Similarity=0.143 Sum_probs=50.0
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCch----hHHHHHHcCceecCCCcCCHhhhhccCCe
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR----SFAEARAAGFTEENGTLGDIYETISGSDL 181 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~----s~~~A~~~G~~~~d~~~~~~~eav~~ADv 181 (462)
..+.+ ++|+|+|+|..|.++|+-|++. |..|.+.++.... ..+..++.|+.... -....+.+.++|+
T Consensus 10 ~~~~~-~~i~v~G~G~sG~a~a~~L~~~------G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~--~~~~~~~~~~~dl 80 (458)
T PRK01710 10 KFIKN-KKVAVVGIGVSNIPLIKFLVKL------GAKVTAFDKKSEEELGEVSNELKELGVKLVL--GENYLDKLDGFDV 80 (458)
T ss_pred hhhcC-CeEEEEcccHHHHHHHHHHHHC------CCEEEEECCCCCccchHHHHHHHhCCCEEEe--CCCChHHhccCCE
Confidence 55677 9999999999999999999999 9988776654321 12335566875310 1122455688999
Q ss_pred EEEe
Q 012479 182 VLLL 185 (462)
Q Consensus 182 ViLa 185 (462)
||+.
T Consensus 81 VV~S 84 (458)
T PRK01710 81 IFKT 84 (458)
T ss_pred EEEC
Confidence 8886
No 301
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=94.04 E-value=0.13 Score=45.63 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=25.4
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEe
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~ 147 (462)
+||.|||+|..|..++.+|..+ |+ ++.+.+
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~------Gv~~i~lvD 33 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARS------GVGKITLVD 33 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHH------TTSEEEEEE
T ss_pred CEEEEECcCHHHHHHHHHHHHh------CCCceeecC
Confidence 7999999999999999999998 77 555554
No 302
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.01 E-value=0.17 Score=51.57 Aligned_cols=76 Identities=14% Similarity=0.125 Sum_probs=57.9
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..|+| |+|.|||-+ ..|..++.-|... +..|.+.... +.+..+.+++||+||.
T Consensus 154 i~l~G-k~vvViGrS~~VGkPla~lL~~~------~ATVt~chs~-------------------T~dl~~~~k~ADIvIs 207 (282)
T PRK14180 154 IKTEG-AYAVVVGASNVVGKPVSQLLLNA------KATVTTCHRF-------------------TTDLKSHTTKADILIV 207 (282)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEEcCC-------------------CCCHHHHhhhcCEEEE
Confidence 46899 999999966 7899999999887 7777665321 2356677899999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++.-... +. ..++|+|++|+|++
T Consensus 208 AvGkp~~---i~--~~~vk~gavVIDvG 230 (282)
T PRK14180 208 AVGKPNF---IT--ADMVKEGAVVIDVG 230 (282)
T ss_pred ccCCcCc---CC--HHHcCCCcEEEEec
Confidence 9985433 22 24578999988874
No 303
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=94.00 E-value=0.16 Score=51.59 Aligned_cols=76 Identities=17% Similarity=0.244 Sum_probs=58.3
Q ss_pred cccCCCCEEEEEcccc-hHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWGS-QGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~-mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..|+| +++.|||-++ .|..+++-|... +..|.+.... +.+..+.+++||+|+.
T Consensus 152 i~l~G-k~~vVVGrS~iVGkPla~lL~~~------naTVtvcHs~-------------------T~~l~~~~k~ADIvv~ 205 (283)
T COG0190 152 IDLRG-KNVVVVGRSNIVGKPLALLLLNA------NATVTVCHSR-------------------TKDLASITKNADIVVV 205 (283)
T ss_pred CCCCC-CEEEEECCCCcCcHHHHHHHHhC------CCEEEEEcCC-------------------CCCHHHHhhhCCEEEE
Confidence 46899 9999999885 689999999987 7777765432 2356678899999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++--... +. .+.+|+|++|+|++
T Consensus 206 AvG~p~~---i~--~d~vk~gavVIDVG 228 (283)
T COG0190 206 AVGKPHF---IK--ADMVKPGAVVIDVG 228 (283)
T ss_pred ecCCccc---cc--cccccCCCEEEecC
Confidence 9974322 22 56789999998885
No 304
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=93.99 E-value=0.15 Score=53.19 Aligned_cols=64 Identities=9% Similarity=0.028 Sum_probs=44.7
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..++| ++|.|||.|-||...+++|++. |. ++++.+|.... ...+-. ....-+...++|+||.
T Consensus 170 ~~l~~-k~vLvIGaGem~~l~a~~L~~~------g~~~i~v~nRt~~~-----~~~~~~-----~~~~~~~~~~~DvVIs 232 (338)
T PRK00676 170 QKSKK-ASLLFIGYSEINRKVAYYLQRQ------GYSRITFCSRQQLT-----LPYRTV-----VREELSFQDPYDVIFF 232 (338)
T ss_pred CCccC-CEEEEEcccHHHHHHHHHHHHc------CCCEEEEEcCCccc-----cchhhh-----hhhhhhcccCCCEEEE
Confidence 34788 9999999999999999999998 86 68888887421 111100 0011133468999999
Q ss_pred ee
Q 012479 185 LI 186 (462)
Q Consensus 185 av 186 (462)
++
T Consensus 233 ~t 234 (338)
T PRK00676 233 GS 234 (338)
T ss_pred cC
Confidence 74
No 305
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.94 E-value=0.16 Score=51.75 Aligned_cols=76 Identities=16% Similarity=0.177 Sum_probs=57.4
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..++| |++.|||-+ ..|..++.-|.+. +..|.+.... +.+..+.+++||+||.
T Consensus 153 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~AtVtichs~-------------------T~nl~~~~~~ADIvI~ 206 (282)
T PRK14182 153 VDPKG-KRALVVGRSNIVGKPMAMMLLER------HATVTIAHSR-------------------TADLAGEVGRADILVA 206 (282)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 46899 999999976 7899999999877 7677664221 2356788899999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++.-. .++. ..++|+|++|+|++
T Consensus 207 AvGk~---~~i~--~~~ik~gaiVIDvG 229 (282)
T PRK14182 207 AIGKA---ELVK--GAWVKEGAVVIDVG 229 (282)
T ss_pred ecCCc---CccC--HHHcCCCCEEEEee
Confidence 99842 2333 34578999988864
No 306
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.86 E-value=0.18 Score=51.29 Aligned_cols=76 Identities=18% Similarity=0.126 Sum_probs=57.6
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..++| |++.|||-+ ..|..++.-|.+. +..|.+.... +.++.+.+++||+||.
T Consensus 153 i~l~G-k~vvVvGrS~iVGkPla~lL~~~------~atVt~chs~-------------------T~nl~~~~~~ADIvIs 206 (282)
T PRK14166 153 IDLEG-KDAVIIGASNIVGRPMATMLLNA------GATVSVCHIK-------------------TKDLSLYTRQADLIIV 206 (282)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHHC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 35899 999999976 7899999999877 7777665422 2357788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++.-... +. ..++|+|++|+|++
T Consensus 207 AvGkp~~---i~--~~~vk~GavVIDvG 229 (282)
T PRK14166 207 AAGCVNL---LR--SDMVKEGVIVVDVG 229 (282)
T ss_pred cCCCcCc---cC--HHHcCCCCEEEEec
Confidence 9985332 22 24578999988864
No 307
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.83 E-value=0.2 Score=53.00 Aligned_cols=71 Identities=24% Similarity=0.215 Sum_probs=48.9
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhH----HHHHHcCceecCCCcCCHhhhhccCCeEE
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF----AEARAAGFTEENGTLGDIYETISGSDLVL 183 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~----~~A~~~G~~~~d~~~~~~~eav~~ADvVi 183 (462)
+++ |+|.|||.|.+|.++|..|.+. |.+|++.++.....+ +...+.|....- .....+...++|+||
T Consensus 3 ~~~-k~v~iiG~g~~G~~~A~~l~~~------G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~d~vv 73 (450)
T PRK14106 3 LKG-KKVLVVGAGVSGLALAKFLKKL------GAKVILTDEKEEDQLKEALEELGELGIELVL--GEYPEEFLEGVDLVV 73 (450)
T ss_pred cCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCchHHHHHHHHHHHhcCCEEEe--CCcchhHhhcCCEEE
Confidence 577 9999999999999999999999 999888776542222 222334553210 112234557799999
Q ss_pred Eeec
Q 012479 184 LLIS 187 (462)
Q Consensus 184 Lavp 187 (462)
+++-
T Consensus 74 ~~~g 77 (450)
T PRK14106 74 VSPG 77 (450)
T ss_pred ECCC
Confidence 9765
No 308
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=93.81 E-value=0.13 Score=52.15 Aligned_cols=77 Identities=21% Similarity=0.104 Sum_probs=51.8
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcCceecCC--CcCC---HhhhhccCC
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENG--TLGD---IYETISGSD 180 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~d~--~~~~---~~eav~~AD 180 (462)
.+++ +++.|||.|-.|.|++-.|.+. |. ++.|.+|..++..+.+.......... ...+ ..+.+.++|
T Consensus 124 ~~~~-k~vlilGaGGaarAi~~aL~~~------g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~d 196 (283)
T PRK14027 124 NAKL-DSVVQVGAGGVGNAVAYALVTH------GVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAAD 196 (283)
T ss_pred CcCC-CeEEEECCcHHHHHHHHHHHHC------CCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcC
Confidence 4667 8999999999999999999988 87 67788887666555554421000000 0112 233556789
Q ss_pred eEEEeecchh
Q 012479 181 LVLLLISDAA 190 (462)
Q Consensus 181 vViLavpd~a 190 (462)
+||.+||...
T Consensus 197 ivINaTp~Gm 206 (283)
T PRK14027 197 GVVNATPMGM 206 (283)
T ss_pred EEEEcCCCCC
Confidence 9999998543
No 309
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=93.79 E-value=0.16 Score=49.47 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=25.7
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHHh
Q 012479 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~AiA~~Lrds 133 (462)
...|+. .+|.|||+|..|..+|++|...
T Consensus 16 q~~L~~-~~VlivG~GglGs~va~~La~~ 43 (228)
T cd00757 16 QEKLKN-ARVLVVGAGGLGSPAAEYLAAA 43 (228)
T ss_pred HHHHhC-CcEEEECCCHHHHHHHHHHHHc
Confidence 367788 9999999999999999999988
No 310
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.73 E-value=0.19 Score=51.35 Aligned_cols=76 Identities=18% Similarity=0.168 Sum_probs=57.8
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..|+| |+|.|||-+ ..|..++.-|.+. +..|.+.... +.+..+.+++||+||.
T Consensus 156 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~aTVt~chs~-------------------T~~l~~~~~~ADIvVs 209 (294)
T PRK14187 156 RNLSG-SDAVVIGRSNIVGKPMACLLLGE------NCTVTTVHSA-------------------TRDLADYCSKADILVA 209 (294)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHhhC------CCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 46899 999999976 7899999999888 7777665321 2357788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++.-... +. ..++|+|++|+|++
T Consensus 210 AvGkp~~---i~--~~~ik~gaiVIDVG 232 (294)
T PRK14187 210 AVGIPNF---VK--YSWIKKGAIVIDVG 232 (294)
T ss_pred ccCCcCc---cC--HHHcCCCCEEEEec
Confidence 9985432 22 24578999988863
No 311
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.56 E-value=0.2 Score=51.26 Aligned_cols=80 Identities=19% Similarity=0.189 Sum_probs=55.6
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..++| |+|.|||-+ ..|..++.-|.+.+... +..|.+.... ..++++.+++||+||.
T Consensus 155 i~l~G-k~vvViGrS~iVG~Pla~lL~~~~~~~--~atVt~~hs~-------------------t~~l~~~~~~ADIvI~ 212 (295)
T PRK14174 155 IETKG-KHCVVVGRSNIVGKPMANLMLQKLKES--NCTVTICHSA-------------------TKDIPSYTRQADILIA 212 (295)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHHhccccC--CCEEEEEeCC-------------------chhHHHHHHhCCEEEE
Confidence 46889 999999966 78999999887621000 5566554321 2356788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++.-. .++. ..++|+|++|++++
T Consensus 213 Avg~~---~li~--~~~vk~GavVIDVg 235 (295)
T PRK14174 213 AIGKA---RFIT--ADMVKPGAVVIDVG 235 (295)
T ss_pred ecCcc---CccC--HHHcCCCCEEEEee
Confidence 99643 3333 23459999988875
No 312
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=93.55 E-value=0.19 Score=52.79 Aligned_cols=76 Identities=18% Similarity=0.191 Sum_probs=57.3
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..++| |++.|||-+ ..|..++.-|.+. +-.|.+...+ +.+..+.+++||+||.
T Consensus 227 i~l~G-K~vvVIGRS~iVGkPLa~LL~~~------~ATVTicHs~-------------------T~nl~~~~r~ADIVIs 280 (364)
T PLN02616 227 VEIKG-KRAVVIGRSNIVGMPAALLLQRE------DATVSIVHSR-------------------TKNPEEITREADIIIS 280 (364)
T ss_pred CCCCC-CEEEEECCCccccHHHHHHHHHC------CCeEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 35789 999999966 7899999999887 7777665321 2467788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++.-... +. ...+|+|++|+|++
T Consensus 281 AvGkp~~---i~--~d~vK~GAvVIDVG 303 (364)
T PLN02616 281 AVGQPNM---VR--GSWIKPGAVVIDVG 303 (364)
T ss_pred cCCCcCc---CC--HHHcCCCCEEEecc
Confidence 9985432 22 34578999988864
No 313
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=93.54 E-value=0.3 Score=46.77 Aligned_cols=36 Identities=25% Similarity=0.235 Sum_probs=30.1
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEe
Q 012479 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~ 147 (462)
.+.|+. .+|.|||+|..|..++++|..+ |+ ++.+.+
T Consensus 16 Q~~L~~-s~VlIiG~gglG~evak~La~~------GVg~i~lvD 52 (197)
T cd01492 16 QKRLRS-ARILLIGLKGLGAEIAKNLVLS------GIGSLTILD 52 (197)
T ss_pred HHHHHh-CcEEEEcCCHHHHHHHHHHHHc------CCCEEEEEE
Confidence 477888 9999999999999999999998 87 344443
No 314
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.49 E-value=0.2 Score=53.45 Aligned_cols=66 Identities=29% Similarity=0.297 Sum_probs=46.2
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
.++| ++|.|||+|-.|.+.|+-|++. |.+|.+.++..... ...++.|+... ..+ .+.+.++|+||.
T Consensus 6 ~~~~-~~i~viG~G~~G~~~a~~l~~~------G~~v~~~D~~~~~~-~~l~~~g~~~~---~~~-~~~~~~~d~vv~ 71 (460)
T PRK01390 6 GFAG-KTVAVFGLGGSGLATARALVAG------GAEVIAWDDNPASR-AKAAAAGITTA---DLR-TADWSGFAALVL 71 (460)
T ss_pred ccCC-CEEEEEeecHhHHHHHHHHHHC------CCEEEEECCChhhH-HHHHhcCcccc---CCC-hhHHcCCCEEEE
Confidence 3678 9999999999999999999998 99887666443322 23445677531 112 234578998886
No 315
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.48 E-value=0.23 Score=50.60 Aligned_cols=76 Identities=17% Similarity=0.168 Sum_probs=56.9
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHH--hhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeE
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRD--SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLV 182 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrd--s~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvV 182 (462)
..++| |++.|||-+ ..|..++.-|.+ . +..|.+.... +.++.+.+++||+|
T Consensus 154 i~l~G-k~vvViGrS~~VGkPla~lL~~~~~------~atVtvchs~-------------------T~~l~~~~k~ADIv 207 (284)
T PRK14193 154 VELAG-AHVVVIGRGVTVGRPIGLLLTRRSE------NATVTLCHTG-------------------TRDLAAHTRRADII 207 (284)
T ss_pred CCCCC-CEEEEECCCCcchHHHHHHHhhccC------CCEEEEeCCC-------------------CCCHHHHHHhCCEE
Confidence 45889 999999965 789999999976 5 5566665321 24678889999999
Q ss_pred EEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 183 LLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 183 iLavpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
|.++.-.. ++. ..++|+|++|+|++
T Consensus 208 V~AvGkp~---~i~--~~~ik~GavVIDvG 232 (284)
T PRK14193 208 VAAAGVAH---LVT--ADMVKPGAAVLDVG 232 (284)
T ss_pred EEecCCcC---ccC--HHHcCCCCEEEEcc
Confidence 99998543 232 34579999988864
No 316
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=93.47 E-value=0.55 Score=46.34 Aligned_cols=88 Identities=18% Similarity=0.202 Sum_probs=56.0
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcE-EEEEecCCchhHHHHHHcCceecCCCcCC---Hhhhh------cc
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETI------SG 178 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~-Vivg~r~~~~s~~~A~~~G~~~~d~~~~~---~~eav------~~ 178 (462)
.| .+|.|+|.|.+|...++-++.. |.+ |++. +.+++..+.+++.|... +.+ ..+.+ ..
T Consensus 120 ~g-~~VlV~G~G~vG~~~~~~ak~~------G~~~Vi~~-~~~~~r~~~a~~~Ga~~----~i~~~~~~~~~~~~~~~~g 187 (280)
T TIGR03366 120 KG-RRVLVVGAGMLGLTAAAAAAAA------GAARVVAA-DPSPDRRELALSFGATA----LAEPEVLAERQGGLQNGRG 187 (280)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEE-CCCHHHHHHHHHcCCcE----ecCchhhHHHHHHHhCCCC
Confidence 67 8999999999999999999888 886 5444 44556678888888742 111 11111 24
Q ss_pred CCeEEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 179 SDLVLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 179 ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
.|+|+-++... ..+++....++++-.++..
T Consensus 188 ~d~vid~~G~~---~~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 188 VDVALEFSGAT---AAVRACLESLDVGGTAVLA 217 (280)
T ss_pred CCEEEECCCCh---HHHHHHHHHhcCCCEEEEe
Confidence 68888777532 2333334455665555443
No 317
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=93.46 E-value=0.33 Score=46.45 Aligned_cols=36 Identities=22% Similarity=0.319 Sum_probs=29.9
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEe
Q 012479 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~ 147 (462)
.+.|+. .+|.|||+|.+|..++++|..+ |+ ++.+.+
T Consensus 14 q~~L~~-s~VlviG~gglGsevak~L~~~------GVg~i~lvD 50 (198)
T cd01485 14 QNKLRS-AKVLIIGAGALGAEIAKNLVLA------GIDSITIVD 50 (198)
T ss_pred HHHHhh-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEE
Confidence 467778 9999999999999999999998 87 344443
No 318
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=93.42 E-value=0.21 Score=51.61 Aligned_cols=69 Identities=14% Similarity=0.147 Sum_probs=40.0
Q ss_pred EEEEEcc-cchHHHHHHHHHHhhhhhcCCc-------EEEEEecCCchhHHHHHHcCceec-----CC--CcCCHhhhhc
Q 012479 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKGSRSFAEARAAGFTEE-----NG--TLGDIYETIS 177 (462)
Q Consensus 113 kIgIIG~-G~mG~AiA~~Lrds~~~~g~G~-------~Vivg~r~~~~s~~~A~~~G~~~~-----d~--~~~~~~eav~ 177 (462)
+|+|||. |.+|.++|..|... ++ ++++.++........++..-+... .. ...+..+.++
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~------~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~ 74 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARG------RMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFT 74 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhc------cccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhC
Confidence 6899999 99999999999875 43 355544432211111111100000 00 0124467899
Q ss_pred cCCeEEEeec
Q 012479 178 GSDLVLLLIS 187 (462)
Q Consensus 178 ~ADvViLavp 187 (462)
+||+||++--
T Consensus 75 ~aDiVVitAG 84 (324)
T TIGR01758 75 DVDVAILVGA 84 (324)
T ss_pred CCCEEEEcCC
Confidence 9999999764
No 319
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=93.42 E-value=0.22 Score=52.04 Aligned_cols=76 Identities=18% Similarity=0.098 Sum_probs=57.0
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..++| |+|.|||-+ ..|..+|.-|.+. +..|.+.... +.+..+.+++||+||.
T Consensus 210 i~l~G-K~vvVIGRS~iVGkPla~LL~~~------~ATVTicHs~-------------------T~nl~~~~~~ADIvIs 263 (345)
T PLN02897 210 VEIAG-KNAVVIGRSNIVGLPMSLLLQRH------DATVSTVHAF-------------------TKDPEQITRKADIVIA 263 (345)
T ss_pred CCCCC-CEEEEECCCccccHHHHHHHHHC------CCEEEEEcCC-------------------CCCHHHHHhhCCEEEE
Confidence 36889 999999966 6899999999877 7777655321 2356788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++.-... +. ...+|+|++|+|++
T Consensus 264 AvGkp~~---v~--~d~vk~GavVIDVG 286 (345)
T PLN02897 264 AAGIPNL---VR--GSWLKPGAVVIDVG 286 (345)
T ss_pred ccCCcCc---cC--HHHcCCCCEEEEcc
Confidence 9985432 22 34578999988874
No 320
>PRK06349 homoserine dehydrogenase; Provisional
Probab=93.41 E-value=0.19 Score=53.59 Aligned_cols=90 Identities=18% Similarity=0.267 Sum_probs=50.0
Q ss_pred CEEEEEcccchHHHHHHHHHHhhh----hhcCCcEEEE-EecCCchhHHHHHHcCceecCCCcCCHhhhhc--cCCeEEE
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLA----EAKSDIVVKV-GLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLL 184 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~----~~g~G~~Viv-g~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~--~ADvViL 184 (462)
.+|||||+|.+|..++..|.+..+ ..|.+++++. ..++..+ .......+... ..+.++++. +.|+|+.
T Consensus 4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~-~~~~~~~~~~~----~~d~~~ll~d~~iDvVve 78 (426)
T PRK06349 4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEK-DRGVDLPGILL----TTDPEELVNDPDIDIVVE 78 (426)
T ss_pred EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhh-ccCCCCcccce----eCCHHHHhhCCCCCEEEE
Confidence 579999999999999988865411 1122344432 3333211 11011111111 457888885 4799999
Q ss_pred eecch-hHHHHHHHHHhcCCCCcEEE
Q 012479 185 LISDA-AQADNYEKIFSCMKPNSILG 209 (462)
Q Consensus 185 avpd~-a~~~vl~eI~~~Lk~gaiL~ 209 (462)
++++. .+.+. +...|+.|+.|+
T Consensus 79 ~tg~~~~~~~~---~~~aL~~GkhVV 101 (426)
T PRK06349 79 LMGGIEPAREL---ILKALEAGKHVV 101 (426)
T ss_pred CCCCchHHHHH---HHHHHHCCCeEE
Confidence 98763 22333 334456676544
No 321
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=93.40 E-value=0.49 Score=46.11 Aligned_cols=82 Identities=17% Similarity=0.035 Sum_probs=56.1
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCC-chhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~-~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
-.|+| ++|.|||.|..|.-=++.|.+. |-+|+|....- ++......+.++...+ ...+.++.. .+++||.
T Consensus 8 ~~l~~-k~VlvvGgG~va~rKa~~ll~~------ga~v~Vvs~~~~~el~~~~~~~~i~~~~-~~~~~~~~~-~~~lvia 78 (210)
T COG1648 8 LDLEG-KKVLVVGGGSVALRKARLLLKA------GADVTVVSPEFEPELKALIEEGKIKWIE-REFDAEDLD-DAFLVIA 78 (210)
T ss_pred EEcCC-CEEEEECCCHHHHHHHHHHHhc------CCEEEEEcCCccHHHHHHHHhcCcchhh-cccChhhhc-CceEEEE
Confidence 46789 9999999999999999999988 87777765543 3333444444422111 123444444 4999999
Q ss_pred eecchhHHHHHH
Q 012479 185 LISDAAQADNYE 196 (462)
Q Consensus 185 avpd~a~~~vl~ 196 (462)
+|.|....+-+.
T Consensus 79 At~d~~ln~~i~ 90 (210)
T COG1648 79 ATDDEELNERIA 90 (210)
T ss_pred eCCCHHHHHHHH
Confidence 999987755333
No 322
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.30 E-value=0.24 Score=51.14 Aligned_cols=64 Identities=13% Similarity=0.077 Sum_probs=40.1
Q ss_pred EEEEEcc-cchHHHHHHHHHHhhhhhcCCc-------EEEEEecCC--chhH----HHHHH-----cCceecCCCcCCHh
Q 012479 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI-------VVKVGLRKG--SRSF----AEARA-----AGFTEENGTLGDIY 173 (462)
Q Consensus 113 kIgIIG~-G~mG~AiA~~Lrds~~~~g~G~-------~Vivg~r~~--~~s~----~~A~~-----~G~~~~d~~~~~~~ 173 (462)
||+|||. |.+|.+++..|... ++ ++++.+... +... +.... .+... ..+..
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~------~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i----~~~~~ 71 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASG------ELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVI----TTDPE 71 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhC------CccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEE----ecChH
Confidence 7999999 99999999999876 43 355444432 1111 11110 01111 13566
Q ss_pred hhhccCCeEEEee
Q 012479 174 ETISGSDLVLLLI 186 (462)
Q Consensus 174 eav~~ADvViLav 186 (462)
+++++||+||++-
T Consensus 72 ~~~~~aDiVVitA 84 (323)
T cd00704 72 EAFKDVDVAILVG 84 (323)
T ss_pred HHhCCCCEEEEeC
Confidence 8899999999875
No 323
>PRK15076 alpha-galactosidase; Provisional
Probab=93.26 E-value=0.2 Score=53.69 Aligned_cols=74 Identities=20% Similarity=0.192 Sum_probs=43.7
Q ss_pred CCEEEEEcccchHHHHHH--HHHHhhhhhcCCcEEEEEecCCchhHHHHH--------HcCc--eecCCCcCCHhhhhcc
Q 012479 111 INQIGVIGWGSQGPAQAQ--NLRDSLAEAKSDIVVKVGLRKGSRSFAEAR--------AAGF--TEENGTLGDIYETISG 178 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~--~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~--------~~G~--~~~d~~~~~~~eav~~ 178 (462)
|+||+|||.|++|.+.+. .+.... +-.+.+|++.+. +.+..+.+. ..+. .. ..+.|..+++++
T Consensus 1 ~~KIaIIGaGsvg~~~~~~~~i~~~~--~l~~~evvLvDi-d~er~~~~~~l~~~~~~~~~~~~~i--~~ttD~~eal~d 75 (431)
T PRK15076 1 MPKITFIGAGSTVFTKNLLGDILSVP--ALRDAEIALMDI-DPERLEESEIVARKLAESLGASAKI--TATTDRREALQG 75 (431)
T ss_pred CcEEEEECCCHHHhHHHHHHHHhhCc--cCCCCEEEEECC-CHHHHHHHHHHHHHHHHhcCCCeEE--EEECCHHHHhCC
Confidence 479999999999977665 654220 011346655544 333333211 1221 11 114566899999
Q ss_pred CCeEEEeecch
Q 012479 179 SDLVLLLISDA 189 (462)
Q Consensus 179 ADvViLavpd~ 189 (462)
||+||.++-..
T Consensus 76 ADfVv~ti~vg 86 (431)
T PRK15076 76 ADYVINAIQVG 86 (431)
T ss_pred CCEEeEeeeeC
Confidence 99999998764
No 324
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=93.26 E-value=0.45 Score=47.78 Aligned_cols=87 Identities=9% Similarity=0.001 Sum_probs=57.2
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecc
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISD 188 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd 188 (462)
+| +++.|+|.|.+|...++-++.. |.++++..+......+.|.+.++.. ...+.-...|+||=++..
T Consensus 144 ~~-~~vlV~G~G~vG~~a~q~ak~~------G~~~v~~~~~~~~rl~~a~~~~~i~------~~~~~~~g~Dvvid~~G~ 210 (308)
T TIGR01202 144 KV-LPDLIVGHGTLGRLLARLTKAA------GGSPPAVWETNPRRRDGATGYEVLD------PEKDPRRDYRAIYDASGD 210 (308)
T ss_pred CC-CcEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHhhhhccccC------hhhccCCCCCEEEECCCC
Confidence 56 8899999999999999888887 8875555555555566666554331 111122457999999886
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEe
Q 012479 189 AAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 189 ~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
.. .++...+.++++-.++..
T Consensus 211 ~~---~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 211 PS---LIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred HH---HHHHHHHhhhcCcEEEEE
Confidence 43 334445566776665544
No 325
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=93.25 E-value=0.43 Score=49.26 Aligned_cols=158 Identities=12% Similarity=0.051 Sum_probs=93.6
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchh
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a 190 (462)
.||+||| .|-.|.-+.+-|.+. ..+++. ..... +. +. ..+.+++++++|+||+|+|...
T Consensus 2 ~~v~IvGasGy~G~el~rlL~~H-----P~~el~-~l~s~-~~--------~~-----~~~~~~~~~~~D~vFlalp~~~ 61 (310)
T TIGR01851 2 PKVFIDGEAGTTGLQIRERLSGR-----DDIELL-SIAPD-RR--------KD-----AAERAKLLNAADVAILCLPDDA 61 (310)
T ss_pred CeEEEECCCChhHHHHHHHHhCC-----CCeEEE-EEecc-cc--------cC-----cCCHhHhhcCCCEEEECCCHHH
Confidence 5899999 688888888888765 123432 22211 11 22 2355667789999999999998
Q ss_pred HHHHHHHHHhcCCCCcEEEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeeccCCC
Q 012479 191 QADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD 270 (462)
Q Consensus 191 ~~~vl~eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~qd~t 270 (462)
..++.+++. ..|..|+|.++- + .+.+ +++-+.|--... .|+..++ ... |+ .+++.
T Consensus 62 s~~~~~~~~---~~g~~VIDlSad---f------Rl~~--~~~yglPEln~~-~~~~i~~--------a~l-IA-nPgC~ 116 (310)
T TIGR01851 62 AREAVSLVD---NPNTCIIDASTA---Y------RTAD--DWAYGFPELAPG-QREKIRN--------SKR-IA-NPGCY 116 (310)
T ss_pred HHHHHHHHH---hCCCEEEECChH---H------hCCC--CCeEEccccCHH-HHHhhcc--------CCE-EE-CCCCH
Confidence 888777653 367788888764 2 1112 566666754322 2333332 233 44 55556
Q ss_pred HHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHHHHHHHHH
Q 012479 271 GRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFR 322 (462)
Q Consensus 271 gea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~paliea~~d 322 (462)
.-+.-+++.=+...|.. +......+++.+..||.+-..++.+.+
T Consensus 117 aTa~~LaL~PL~~~~li--------~~~~~~~~~a~SG~SGAGr~~~~~l~~ 160 (310)
T TIGR01851 117 PTGFIALMRPLVEAGIL--------PADFPITINAVSGYSGGGKAMIADYEQ 160 (310)
T ss_pred HHHHHHHHHHHHHcCCc--------cccceEEEEeccccCccChhhhHHhhh
Confidence 66666666555555532 111112455666778888877766553
No 326
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=93.24 E-value=0.33 Score=49.69 Aligned_cols=70 Identities=17% Similarity=0.199 Sum_probs=52.2
Q ss_pred ccCCCCEEEEEccc---chHHHHHHHHHHhhhhhcCCcEEEEEecCC----chhHHHHHHcCceecCCCcCCHhhhhccC
Q 012479 107 AFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISGS 179 (462)
Q Consensus 107 ~l~gikkIgIIG~G---~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~----~~s~~~A~~~G~~~~d~~~~~~~eav~~A 179 (462)
.++| .||++||-| ++.+|++..+..- |.++.+...+. ....+.+++.|.... ...|+++++++|
T Consensus 147 ~l~g-~~va~vGD~~~~~v~~Sl~~~~a~~------g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~--~~~d~~~a~~~a 217 (301)
T TIGR00670 147 RLDG-LKIALVGDLKYGRTVHSLAEALTRF------GVEVYLISPEELRMPKEILEELKAKGIKVR--ETESLEEVIDEA 217 (301)
T ss_pred CCCC-CEEEEEccCCCCcHHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHcCCEEE--EECCHHHHhCCC
Confidence 4788 999999985 9999999999887 88887765432 233456666665321 146899999999
Q ss_pred CeEEEe
Q 012479 180 DLVLLL 185 (462)
Q Consensus 180 DvViLa 185 (462)
|+|...
T Consensus 218 Dvvyt~ 223 (301)
T TIGR00670 218 DVLYVT 223 (301)
T ss_pred CEEEEC
Confidence 999873
No 327
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=93.23 E-value=0.47 Score=49.29 Aligned_cols=88 Identities=17% Similarity=0.197 Sum_probs=55.0
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCC---------------------chhHHHHHH---
Q 012479 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG---------------------SRSFAEARA--- 159 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~---------------------~~s~~~A~~--- 159 (462)
...|+. .+|.|||+|-+|..+|.+|..+ |+ ++.+.++.. .+....++.
T Consensus 19 Q~~L~~-~~VlVvG~GglGs~va~~La~a------Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~ 91 (339)
T PRK07688 19 QQKLRE-KHVLIIGAGALGTANAEMLVRA------GVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEE 91 (339)
T ss_pred HHHhcC-CcEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHH
Confidence 467788 9999999999999999999988 77 555555421 111111111
Q ss_pred c--Ccee--c--CCCcCCHhhhhccCCeEEEeecchhHHHHHHHHH
Q 012479 160 A--GFTE--E--NGTLGDIYETISGSDLVLLLISDAAQADNYEKIF 199 (462)
Q Consensus 160 ~--G~~~--~--d~~~~~~~eav~~ADvViLavpd~a~~~vl~eI~ 199 (462)
. .+.. . +-+..+..+.++++|+||.++-......++.+..
T Consensus 92 inp~v~v~~~~~~~~~~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~ 137 (339)
T PRK07688 92 INSDVRVEAIVQDVTAEELEELVTGVDLIIDATDNFETRFIVNDAA 137 (339)
T ss_pred HCCCcEEEEEeccCCHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHH
Confidence 1 1110 0 0011234567889999999988776666666543
No 328
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=93.22 E-value=0.65 Score=45.74 Aligned_cols=91 Identities=12% Similarity=0.031 Sum_probs=58.6
Q ss_pred ccccccccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCC-chhHHHHHHcCceecCCCcCCHhhhhc
Q 012479 99 DLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG-SRSFAEARAAGFTEENGTLGDIYETIS 177 (462)
Q Consensus 99 ~~f~~~~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~-~~s~~~A~~~G~~~~d~~~~~~~eav~ 177 (462)
-.|+.. -.++| ++|.|||.|.+|..=+..|.+. |-+|.|.-..- +...+.+....+... ....+.. -++
T Consensus 15 ~~~pi~-l~~~~-~~VLVVGGG~VA~RK~~~Ll~~------gA~VtVVap~i~~el~~l~~~~~i~~~-~r~~~~~-dl~ 84 (223)
T PRK05562 15 KYMFIS-LLSNK-IKVLIIGGGKAAFIKGKTFLKK------GCYVYILSKKFSKEFLDLKKYGNLKLI-KGNYDKE-FIK 84 (223)
T ss_pred CEeeeE-EECCC-CEEEEECCCHHHHHHHHHHHhC------CCEEEEEcCCCCHHHHHHHhCCCEEEE-eCCCChH-HhC
Confidence 345544 56678 8999999999999989999888 87776654432 332333332223221 1112333 367
Q ss_pred cCCeEEEeecchhHHHHHHHHH
Q 012479 178 GSDLVLLLISDAAQADNYEKIF 199 (462)
Q Consensus 178 ~ADvViLavpd~a~~~vl~eI~ 199 (462)
++++||.||.|...-+-+.+.+
T Consensus 85 g~~LViaATdD~~vN~~I~~~a 106 (223)
T PRK05562 85 DKHLIVIATDDEKLNNKIRKHC 106 (223)
T ss_pred CCcEEEECCCCHHHHHHHHHHH
Confidence 8999999999987765554443
No 329
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.20 E-value=0.25 Score=53.44 Aligned_cols=71 Identities=18% Similarity=0.143 Sum_probs=50.5
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
..+.| ++|.|+|+|..|.+.++-|+.. |.+|++.++. ....+.+++.|+.... .....+.++++|+||..
T Consensus 8 ~~~~~-~~v~V~G~G~sG~aa~~~L~~~------G~~v~~~D~~-~~~~~~l~~~g~~~~~--~~~~~~~l~~~D~VV~S 77 (488)
T PRK03369 8 PLLPG-APVLVAGAGVTGRAVLAALTRF------GARPTVCDDD-PDALRPHAERGVATVS--TSDAVQQIADYALVVTS 77 (488)
T ss_pred cccCC-CeEEEEcCCHHHHHHHHHHHHC------CCEEEEEcCC-HHHHHHHHhCCCEEEc--CcchHhHhhcCCEEEEC
Confidence 34567 9999999999999999999988 9888876644 3334456667875311 11234567789988876
Q ss_pred e
Q 012479 186 I 186 (462)
Q Consensus 186 v 186 (462)
-
T Consensus 78 p 78 (488)
T PRK03369 78 P 78 (488)
T ss_pred C
Confidence 5
No 330
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=93.12 E-value=0.32 Score=46.99 Aligned_cols=95 Identities=20% Similarity=0.225 Sum_probs=60.4
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCC---HhhhhccCCeEEEeec
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~---~~eav~~ADvViLavp 187 (462)
|||+||| .|..|.-+++-..++ |++|....|+.++.... .+.......+.+ ..+.+..-|+||.+.-
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~R------GHeVTAivRn~~K~~~~---~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~ 71 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKR------GHEVTAIVRNASKLAAR---QGVTILQKDIFDLTSLASDLAGHDAVISAFG 71 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhC------CCeeEEEEeChHhcccc---ccceeecccccChhhhHhhhcCCceEEEecc
Confidence 6999999 699999999999999 99988878875543221 333221222333 3467888999999875
Q ss_pred ch------hHHHHHHHHHhcCCC-CcE-EEEeccch
Q 012479 188 DA------AQADNYEKIFSCMKP-NSI-LGLSHGFL 215 (462)
Q Consensus 188 d~------a~~~vl~eI~~~Lk~-gai-L~~a~G~~ 215 (462)
.. .+....+.+...++. +.. +.+++|..
T Consensus 72 ~~~~~~~~~~~k~~~~li~~l~~agv~RllVVGGAG 107 (211)
T COG2910 72 AGASDNDELHSKSIEALIEALKGAGVPRLLVVGGAG 107 (211)
T ss_pred CCCCChhHHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 33 222333334455544 432 66777763
No 331
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=93.08 E-value=0.21 Score=54.86 Aligned_cols=76 Identities=25% Similarity=0.192 Sum_probs=50.7
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhh-hccCCeEEEe
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLL 185 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~ea-v~~ADvViLa 185 (462)
.+++ +++.|+|.|-+|.+++..|.+. |.+|++.+|..++..+.+.+.+.... ...+..+. ...+|+|+.+
T Consensus 376 ~~~~-k~vlIlGaGGagrAia~~L~~~------G~~V~i~nR~~e~a~~la~~l~~~~~--~~~~~~~~~~~~~diiINt 446 (529)
T PLN02520 376 PLAG-KLFVVIGAGGAGKALAYGAKEK------GARVVIANRTYERAKELADAVGGQAL--TLADLENFHPEEGMILANT 446 (529)
T ss_pred CCCC-CEEEEECCcHHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHhCCcee--eHhHhhhhccccCeEEEec
Confidence 3677 8999999999999999999998 88888887765555555544432110 01122222 2356888888
Q ss_pred ecchhH
Q 012479 186 ISDAAQ 191 (462)
Q Consensus 186 vpd~a~ 191 (462)
+|....
T Consensus 447 T~vGm~ 452 (529)
T PLN02520 447 TSVGMQ 452 (529)
T ss_pred ccCCCC
Confidence 876543
No 332
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.08 E-value=0.17 Score=52.36 Aligned_cols=52 Identities=25% Similarity=0.369 Sum_probs=45.9
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCcee
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTE 164 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~ 164 (462)
+--+| .+++|+|+|..|.|.+++.|.. |-.-|||.|.+++-.++|++.|+++
T Consensus 189 kv~~G-stvAVfGLG~VGLav~~Gaka~------GAsrIIgvDiN~~Kf~~ak~fGaTe 240 (375)
T KOG0022|consen 189 KVEPG-STVAVFGLGGVGLAVAMGAKAA------GASRIIGVDINPDKFEKAKEFGATE 240 (375)
T ss_pred ccCCC-CEEEEEecchHHHHHHHhHHhc------CcccEEEEecCHHHHHHHHhcCcce
Confidence 34467 8999999999999999999998 8766789998888899999999985
No 333
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=93.07 E-value=0.26 Score=52.00 Aligned_cols=93 Identities=15% Similarity=0.156 Sum_probs=53.2
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCc--hhHHHHHHcCceecC-CCcCCHh-hhhccCCeEEEee
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--RSFAEARAAGFTEEN-GTLGDIY-ETISGSDLVLLLI 186 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~--~s~~~A~~~G~~~~d-~~~~~~~-eav~~ADvViLav 186 (462)
+||+|||. |..|..+.+-|.+. .++++....+..+ +...... ..+...+ ....+.+ +.++++|+||+++
T Consensus 39 ~kVaIvGATG~vG~eLlrlL~~h-----P~~el~~l~s~~saG~~i~~~~-~~l~~~~~~~~~~~~~~~~~~~DvVf~Al 112 (381)
T PLN02968 39 KRIFVLGASGYTGAEVRRLLANH-----PDFEITVMTADRKAGQSFGSVF-PHLITQDLPNLVAVKDADFSDVDAVFCCL 112 (381)
T ss_pred cEEEEECCCChHHHHHHHHHHhC-----CCCeEEEEEChhhcCCCchhhC-ccccCccccceecCCHHHhcCCCEEEEcC
Confidence 79999995 89999999887765 1345544433211 1111110 0000000 0011222 2258899999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
|.....++.+.+ +.|..|+|.++.
T Consensus 113 p~~~s~~i~~~~----~~g~~VIDlSs~ 136 (381)
T PLN02968 113 PHGTTQEIIKAL----PKDLKIVDLSAD 136 (381)
T ss_pred CHHHHHHHHHHH----hCCCEEEEcCch
Confidence 998666666553 457777777764
No 334
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=92.97 E-value=0.5 Score=48.62 Aligned_cols=70 Identities=13% Similarity=0.124 Sum_probs=41.5
Q ss_pred EEEEEcc-cchHHHHHHHHHHhhhhhcCCc--EEEEEecCC--chhHHHHHHcC-ceecCCCcC-CHhhhhccCCeEEEe
Q 012479 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKG--SRSFAEARAAG-FTEENGTLG-DIYETISGSDLVLLL 185 (462)
Q Consensus 113 kIgIIG~-G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~--~~s~~~A~~~G-~~~~d~~~~-~~~eav~~ADvViLa 185 (462)
||+|||. |++|.++|..|... ++ ++++.+... ...++...... ......+.. +..+++++||+||++
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~------~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvit 74 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQ------PYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIP 74 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhC------CCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEe
Confidence 7999999 99999999999877 65 455444332 11222221110 011000001 236789999999998
Q ss_pred ecc
Q 012479 186 ISD 188 (462)
Q Consensus 186 vpd 188 (462)
.-.
T Consensus 75 aG~ 77 (312)
T TIGR01772 75 AGV 77 (312)
T ss_pred CCC
Confidence 753
No 335
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=92.95 E-value=0.93 Score=46.01 Aligned_cols=93 Identities=14% Similarity=0.139 Sum_probs=59.4
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcE-EEEEecCCchhHHHHHHcCceec-CCCcCCHhhhhc---cCCeEE
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS---GSDLVL 183 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~-Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~eav~---~ADvVi 183 (462)
+| .+|.|+|.|.+|...++-++.. |.. |++..+. ++..+.+++.|.... +....+..+..+ ..|+||
T Consensus 169 ~g-~~VlV~G~G~vG~~aiqlak~~------G~~~Vi~~~~~-~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vi 240 (343)
T PRK09880 169 QG-KRVFVSGVGPIGCLIVAAVKTL------GAAEIVCADVS-PRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSF 240 (343)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCcEEEEEeCC-HHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEE
Confidence 57 8999999999999999988888 874 5544444 556788888887420 111112233222 379999
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 184 LLISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
-++... ..++.....++++-.++..+
T Consensus 241 d~~G~~---~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 241 EVSGHP---SSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred ECCCCH---HHHHHHHHHhhcCCEEEEEc
Confidence 888753 23344445567776655443
No 336
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=92.90 E-value=0.59 Score=50.78 Aligned_cols=100 Identities=15% Similarity=0.201 Sum_probs=66.0
Q ss_pred ccCCCCEEEEEcc----------cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcC-----ceec------
Q 012479 107 AFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG-----FTEE------ 165 (462)
Q Consensus 107 ~l~gikkIgIIG~----------G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G-----~~~~------ 165 (462)
.++| +||+|+|+ .+-...++..|.+. |.+|.+.+..-.. .+..+..+ +...
T Consensus 321 ~~~~-~~VavlGlafK~~tdD~R~Spa~~li~~L~~~------G~~V~~~DP~v~~-~~~~~~~~~~~~~~~~~~~~~~~ 392 (473)
T PLN02353 321 TVSG-KKIAVLGFAFKKDTGDTRETPAIDVCKGLLGD------KAKLSIYDPQVTE-EQIQRDLSMNKFDWDHPRHLQPM 392 (473)
T ss_pred ccCC-CEEEEEeeeecCCCCccccChHHHHHHHHHhC------CCEEEEECCCCCh-HHHHHHhhccccccccccccccc
Confidence 4788 99999998 56777888888888 8888776543211 11111121 1000
Q ss_pred -------CCCcCCHhhhhccCCeEEEeecchhHHHH-HHHHHhcCCCCcEEEEeccc
Q 012479 166 -------NGTLGDIYETISGSDLVLLLISDAAQADN-YEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 166 -------d~~~~~~~eav~~ADvViLavpd~a~~~v-l~eI~~~Lk~gaiL~~a~G~ 214 (462)
-..+.+..+++++||+|++++.-....++ ++++.+.|++..+|.|.-++
T Consensus 393 ~~~~~~~~~~~~~~~~a~~~aD~vvi~t~~~ef~~l~~~~~~~~m~~~~~viD~rn~ 449 (473)
T PLN02353 393 SPTAVKQVSVVWDAYEATKGAHGICILTEWDEFKTLDYQKIYDNMQKPAFVFDGRNV 449 (473)
T ss_pred ccccccceeeeCCHHHHhcCCCEEEECCCChHhcccCHHHHHHhccCCCEEEECCCC
Confidence 00134567899999999999998777653 55677777765578887665
No 337
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=92.90 E-value=0.43 Score=46.22 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=30.4
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEec
Q 012479 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r 148 (462)
...|+. .+|.|||+|.+|..++++|... |+ ++++.++
T Consensus 23 q~~L~~-~~V~ViG~GglGs~ia~~La~~------Gvg~i~lvD~ 60 (212)
T PRK08644 23 LEKLKK-AKVGIAGAGGLGSNIAVALARS------GVGNLKLVDF 60 (212)
T ss_pred HHHHhC-CCEEEECcCHHHHHHHHHHHHc------CCCeEEEEeC
Confidence 477888 9999999999999999999988 76 3444443
No 338
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=92.84 E-value=0.4 Score=47.44 Aligned_cols=28 Identities=25% Similarity=0.423 Sum_probs=26.2
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHHh
Q 012479 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~AiA~~Lrds 133 (462)
...|+. ++|.|||+|..|..++++|...
T Consensus 27 Q~~L~~-~~VliiG~GglGs~va~~La~~ 54 (245)
T PRK05690 27 QEKLKA-ARVLVVGLGGLGCAASQYLAAA 54 (245)
T ss_pred HHHhcC-CeEEEECCCHHHHHHHHHHHHc
Confidence 478888 9999999999999999999988
No 339
>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional
Probab=92.83 E-value=0.21 Score=52.37 Aligned_cols=84 Identities=15% Similarity=0.041 Sum_probs=52.6
Q ss_pred CEEEEEcccchHHHH-HHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCce---e-cCC-C---------c--CCHh-
Q 012479 112 NQIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT---E-ENG-T---------L--GDIY- 173 (462)
Q Consensus 112 kkIgIIG~G~mG~Ai-A~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~---~-~d~-~---------~--~~~~- 173 (462)
|||.++|.|++|+++ +.-|.++ |++|+..+. ++...+.-.+.|.- . .++ . . .+.+
T Consensus 1 mki~~~GaGa~gr~~~~~~l~~~------g~~V~~vd~-~~~~v~aL~~qglY~v~~~~~~~~~~~i~~v~~~~~~~~~~ 73 (381)
T PRK02318 1 MKAVHFGAGNIGRGFIGKLLADN------GFEVTFVDV-NQELIDALNKRKSYQVIVVGENEQVETVSNVSAINSADEEA 73 (381)
T ss_pred CceEEECCchhhHHHHHHHHHhC------CCeEEEEEC-CHHHHHHHhcCCCeEEEEecCCCcEEEEeeEeeeCCCCHHH
Confidence 689999999999977 5555556 777665553 34445555555641 1 111 0 1 0112
Q ss_pred --hhhccCCeEEEeecchhHHHHHHHHHhcC
Q 012479 174 --ETISGSDLVLLLISDAAQADNYEKIFSCM 202 (462)
Q Consensus 174 --eav~~ADvViLavpd~a~~~vl~eI~~~L 202 (462)
+.+.++|+|++++++.....+...|.+.|
T Consensus 74 ~~~~~~~~dlvt~~v~~~~~~s~~~~l~~~L 104 (381)
T PRK02318 74 VIEAIAEADLVTTAVGPNILPFIAPLIAKGL 104 (381)
T ss_pred HHHHhcCCCEEEeCCCcccchhHHHHHHHHH
Confidence 24458899999999887766666665555
No 340
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=92.82 E-value=0.32 Score=50.51 Aligned_cols=87 Identities=23% Similarity=0.189 Sum_probs=52.6
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCCcE--EEEEecCCc---hhHHHHHHcC--ceecCCCcCCHhhhhccCCeEE
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIV--VKVGLRKGS---RSFAEARAAG--FTEENGTLGDIYETISGSDLVL 183 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~--Vivg~r~~~---~s~~~A~~~G--~~~~d~~~~~~~eav~~ADvVi 183 (462)
.+|+|||. |..|..+.+-|.++ ++. .+....... +... -.| +... -.+..+ ++++|+||
T Consensus 5 ~~IaIvGATG~vG~eLlrlL~~~------~hP~~~l~~v~s~~~aG~~l~---~~~~~l~~~---~~~~~~-~~~vD~vF 71 (336)
T PRK05671 5 LDIAVVGATGTVGEALVQILEER------DFPVGTLHLLASSESAGHSVP---FAGKNLRVR---EVDSFD-FSQVQLAF 71 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhhC------CCCceEEEEEECcccCCCeec---cCCcceEEe---eCChHH-hcCCCEEE
Confidence 68999995 99999999999876 441 122332211 1111 111 1110 112223 57899999
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 184 LLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
+++|.....++.+++. +.|..++|.+|-
T Consensus 72 la~p~~~s~~~v~~~~---~~G~~VIDlS~~ 99 (336)
T PRK05671 72 FAAGAAVSRSFAEKAR---AAGCSVIDLSGA 99 (336)
T ss_pred EcCCHHHHHHHHHHHH---HCCCeEEECchh
Confidence 9999876666666553 357778877763
No 341
>PRK05086 malate dehydrogenase; Provisional
Probab=92.79 E-value=0.69 Score=47.45 Aligned_cols=72 Identities=18% Similarity=0.173 Sum_probs=41.3
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchh----HHHHHHc-CceecCCCcCCHhhhhccCCeEEEe
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS----FAEARAA-GFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s----~~~A~~~-G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
|||+|||. |.+|.+++..|...+ +.+..+.+.+++ +.. ++..... -.........++.+.++++|+||++
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~---~~~~el~L~d~~-~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIit 76 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQL---PAGSELSLYDIA-PVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLIS 76 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCC---CCccEEEEEecC-CCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEc
Confidence 68999999 999999999885421 013345544443 222 1221100 0111000013556788999999998
Q ss_pred ec
Q 012479 186 IS 187 (462)
Q Consensus 186 vp 187 (462)
.-
T Consensus 77 aG 78 (312)
T PRK05086 77 AG 78 (312)
T ss_pred CC
Confidence 75
No 342
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=92.77 E-value=0.43 Score=49.78 Aligned_cols=86 Identities=15% Similarity=0.129 Sum_probs=63.1
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEE-EEecCCchhHHHHHHcCceecCCCcCCHhhhhccC--CeEEEeecc
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK-VGLRKGSRSFAEARAAGFTEENGTLGDIYETISGS--DLVLLLISD 188 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vi-vg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~A--DvViLavpd 188 (462)
-++||+|+|.|+.=.+++|.-. ++ .++.|+ |..+..++..+.|++.++.. -....+.+|++++. |+|.+.+|.
T Consensus 7 ir~Gi~g~g~ia~~f~~al~~~-p~--s~~~Ivava~~s~~~A~~fAq~~~~~~-~k~y~syEeLakd~~vDvVyi~~~~ 82 (351)
T KOG2741|consen 7 IRWGIVGAGRIARDFVRALHTL-PE--SNHQIVAVADPSLERAKEFAQRHNIPN-PKAYGSYEELAKDPEVDVVYISTPN 82 (351)
T ss_pred eEEEEeehhHHHHHHHHHhccC-cc--cCcEEEEEecccHHHHHHHHHhcCCCC-CccccCHHHHhcCCCcCEEEeCCCC
Confidence 4789999999999999998764 11 144443 33444556678888888831 22367899999877 999999999
Q ss_pred hhHHHHHHHHHhc
Q 012479 189 AAQADNYEKIFSC 201 (462)
Q Consensus 189 ~a~~~vl~eI~~~ 201 (462)
.++.++.-.++.+
T Consensus 83 ~qH~evv~l~l~~ 95 (351)
T KOG2741|consen 83 PQHYEVVMLALNK 95 (351)
T ss_pred ccHHHHHHHHHHc
Confidence 9999887655443
No 343
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=92.75 E-value=0.34 Score=50.49 Aligned_cols=88 Identities=15% Similarity=0.220 Sum_probs=55.2
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhcCCc---EEE-EE-ecCCchhHHHHHHcCceecCCCcCC-HhhhhccCCeEEE
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVK-VG-LRKGSRSFAEARAAGFTEENGTLGD-IYETISGSDLVLL 184 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~---~Vi-vg-~r~~~~s~~~A~~~G~~~~d~~~~~-~~eav~~ADvViL 184 (462)
.||+||| .|..|..+.+-|.++ ++ ++. +. .+...+.... .|... .+.+ ..+.++++|+||+
T Consensus 8 ~kVaVvGAtG~vG~eLlrlL~~~------~hP~~~l~~las~rsaGk~~~~---~~~~~---~v~~~~~~~~~~~D~vf~ 75 (344)
T PLN02383 8 PSVAIVGVTGAVGQEFLSVLTDR------DFPYSSLKMLASARSAGKKVTF---EGRDY---TVEELTEDSFDGVDIALF 75 (344)
T ss_pred CeEEEEcCCChHHHHHHHHHHhC------CCCcceEEEEEccCCCCCeeee---cCcee---EEEeCCHHHHcCCCEEEE
Confidence 7899999 688899998888776 54 222 22 2222222221 12110 0111 1245688999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
++|.....++.+++. +.|..|+|.++-
T Consensus 76 a~p~~~s~~~~~~~~---~~g~~VIDlS~~ 102 (344)
T PLN02383 76 SAGGSISKKFGPIAV---DKGAVVVDNSSA 102 (344)
T ss_pred CCCcHHHHHHHHHHH---hCCCEEEECCch
Confidence 999998777777653 368888888774
No 344
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=92.74 E-value=0.56 Score=48.44 Aligned_cols=155 Identities=14% Similarity=0.071 Sum_probs=89.8
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhcCC-cEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecch
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g~G-~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~ 189 (462)
.||+||| .|..|..+.+-|.+. . +++.....+ +.. . ..+.++..+++|+||+|+|..
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~h------p~~~l~~~~s~-~~~------~--------~~~~~~~~~~~DvvFlalp~~ 61 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGR------SDIELLSIPEA-KRK------D--------AAARRELLNAADVAILCLPDD 61 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcC------CCeEEEEEecC-CCC------c--------ccCchhhhcCCCEEEECCCHH
Confidence 6899999 799999999888765 3 343322221 111 1 112334567899999999999
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeeccCC
Q 012479 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDV 269 (462)
Q Consensus 190 a~~~vl~eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~qd~ 269 (462)
...++.+++. +.|..|+|.++- + .+.+ +++.+.|--... .|+..++ ... |+ .+++
T Consensus 62 ~s~~~~~~~~---~~g~~VIDlSad---f------Rl~~--~~~yglPEvn~~-~~~~i~~--------~~~-Ia-nPgC 116 (313)
T PRK11863 62 AAREAVALID---NPATRVIDASTA---H------RTAP--GWVYGFPELAPG-QRERIAA--------AKR-VA-NPGC 116 (313)
T ss_pred HHHHHHHHHH---hCCCEEEECChh---h------hcCC--CCeEEcCccCHH-HHHHhhc--------CCe-EE-cCCc
Confidence 8888877764 357788887763 2 1112 566666644221 3444442 233 33 5555
Q ss_pred CHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHHHHHHH
Q 012479 270 DGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESL 320 (462)
Q Consensus 270 tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~paliea~ 320 (462)
..-+.-++++=+..-|.. ++.....+++.+..||.+...++.+
T Consensus 117 ~~Ta~~laL~PL~~~~li--------~~~~~i~i~a~SG~SGAG~~~~~~~ 159 (313)
T PRK11863 117 YPTGAIALLRPLVDAGLL--------PADYPVSINAVSGYSGGGKAMIAAY 159 (313)
T ss_pred HHHHHHHHHHHHHHcCCc--------ccCceEEEEEccccccCCccchHHH
Confidence 555666555545444532 1111124555566778877655554
No 345
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.74 E-value=0.33 Score=49.64 Aligned_cols=76 Identities=13% Similarity=0.130 Sum_probs=55.9
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCC----cEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCC
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSD 180 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G----~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~AD 180 (462)
..++| |++.|||-+ ..|..++.-|.+. | ..|.+...+ +.++.+.+++||
T Consensus 153 i~l~G-K~vvViGrS~iVGkPla~lL~~~------~~~~~aTVtvchs~-------------------T~nl~~~~~~AD 206 (293)
T PRK14185 153 IETSG-KKCVVLGRSNIVGKPMAQLMMQK------AYPGDCTVTVCHSR-------------------SKNLKKECLEAD 206 (293)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHcC------CCCCCCEEEEecCC-------------------CCCHHHHHhhCC
Confidence 46899 999999976 7899999999865 4 345554221 236778889999
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 181 vViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
+||.++.-... +. ...+|+|++|+|++
T Consensus 207 IvIsAvGkp~~---i~--~~~vk~gavVIDvG 233 (293)
T PRK14185 207 IIIAALGQPEF---VK--ADMVKEGAVVIDVG 233 (293)
T ss_pred EEEEccCCcCc---cC--HHHcCCCCEEEEec
Confidence 99999985432 22 34578999988874
No 346
>PLN00125 Succinyl-CoA ligase [GDP-forming] subunit alpha
Probab=92.72 E-value=0.53 Score=48.30 Aligned_cols=91 Identities=9% Similarity=0.161 Sum_probs=68.9
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhcc--CCeEEEeecc
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISG--SDLVLLLISD 188 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~--ADvViLavpd 188 (462)
.||.|.| .|--|..+-..+... |-+++.|...+.- ..+-.|+.. ..++.|+.+. .|+.++++|.
T Consensus 13 ~~v~~~gi~~~~~~~~~~~~~~y------gt~~~~gV~p~~~---~~~i~G~~~----y~sv~dlp~~~~~DlAvI~vPa 79 (300)
T PLN00125 13 TRVICQGITGKNGTFHTEQAIEY------GTKMVGGVTPKKG---GTEHLGLPV----FNTVAEAKAETKANASVIYVPP 79 (300)
T ss_pred CeEEEecCCCHHHHHHHHHHHHh------CCcEEEEECCCCC---CceEcCeec----cCCHHHHhhccCCCEEEEecCH
Confidence 7899999 789999999999988 8899888765420 012257764 5678887765 7999999999
Q ss_pred hhHHHHHHHHHhcCCCCcEEEEeccchH
Q 012479 189 AAQADNYEKIFSCMKPNSILGLSHGFLL 216 (462)
Q Consensus 189 ~a~~~vl~eI~~~Lk~gaiL~~a~G~~i 216 (462)
....+.+++.... .-..+|++++||.-
T Consensus 80 ~~v~~al~e~~~~-Gvk~~vIisaGf~e 106 (300)
T PLN00125 80 PFAAAAILEAMEA-ELDLVVCITEGIPQ 106 (300)
T ss_pred HHHHHHHHHHHHc-CCCEEEEECCCCCc
Confidence 9999999886542 22347889999963
No 347
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.65 E-value=0.24 Score=50.52 Aligned_cols=76 Identities=18% Similarity=0.188 Sum_probs=55.9
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHH----hhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCC
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRD----SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSD 180 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrd----s~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~AD 180 (462)
..++| |++.|||-+ ..|..++.-|.+ . +..|.+.... ..++.+.+++||
T Consensus 153 i~l~G-k~vvViGrS~iVG~Pla~lL~~~~~~~------~AtVt~~hs~-------------------t~~l~~~~~~AD 206 (286)
T PRK14184 153 LSPAG-KKAVVVGRSNIVGKPLALMLGAPGKFA------NATVTVCHSR-------------------TPDLAEECREAD 206 (286)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHhCCcccC------CCEEEEEeCC-------------------chhHHHHHHhCC
Confidence 46899 999999976 789999999987 4 5566654421 235778899999
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 181 vViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
+||.++.-.. ++. ..++++|++|+|++
T Consensus 207 IVI~AvG~p~---li~--~~~vk~GavVIDVG 233 (286)
T PRK14184 207 FLFVAIGRPR---FVT--ADMVKPGAVVVDVG 233 (286)
T ss_pred EEEEecCCCC---cCC--HHHcCCCCEEEEee
Confidence 9999996432 232 23468999988875
No 348
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=92.64 E-value=0.56 Score=50.44 Aligned_cols=35 Identities=34% Similarity=0.366 Sum_probs=30.5
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecC
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~ 149 (462)
-+| ++|+|||.|..|.+.|..|+.. |++|++..+.
T Consensus 139 ~~~-~~V~IIG~GpaGl~aA~~l~~~------G~~V~i~e~~ 173 (467)
T TIGR01318 139 PTG-KRVAVIGAGPAGLACADILARA------GVQVVVFDRH 173 (467)
T ss_pred CCC-CeEEEECCCHHHHHHHHHHHHc------CCeEEEEecC
Confidence 367 9999999999999999999998 9888777554
No 349
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=92.51 E-value=0.65 Score=49.29 Aligned_cols=22 Identities=18% Similarity=0.084 Sum_probs=20.3
Q ss_pred CEEEEEcc-cchHHHHHHHHHHh
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDS 133 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds 133 (462)
-||+|||. |++|.++|-.|...
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~ 67 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASG 67 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhc
Confidence 58999999 99999999999876
No 350
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=92.47 E-value=0.8 Score=42.95 Aligned_cols=30 Identities=27% Similarity=0.304 Sum_probs=24.7
Q ss_pred EEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEec
Q 012479 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (462)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r 148 (462)
||.|||+|.+|..++++|... |+ ++.+.++
T Consensus 1 ~VlViG~GglGs~ia~~La~~------Gvg~i~lvD~ 31 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS------GVGNLKLVDF 31 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc------CCCeEEEEeC
Confidence 589999999999999999988 77 4555443
No 351
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=92.46 E-value=0.46 Score=48.85 Aligned_cols=85 Identities=18% Similarity=0.241 Sum_probs=56.6
Q ss_pred cCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecC----CchhHHHHH----HcC--ceecCCCcCCHhhhh
Q 012479 108 FNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEAR----AAG--FTEENGTLGDIYETI 176 (462)
Q Consensus 108 l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~----~~~s~~~A~----~~G--~~~~d~~~~~~~eav 176 (462)
|+| +||+.||=| ||+.|+...-..- |+++.+...+ ++.-++.|+ +.| +.. +.|+.|++
T Consensus 151 l~g-~k~a~vGDgNNv~nSl~~~~a~~------G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~----t~d~~eAv 219 (310)
T COG0078 151 LKG-LKLAYVGDGNNVANSLLLAAAKL------GMDVRIATPKGYEPDPEVVEKAKENAKESGGKITL----TEDPEEAV 219 (310)
T ss_pred ccC-cEEEEEcCcchHHHHHHHHHHHh------CCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEE----ecCHHHHh
Confidence 899 999999976 7888887777666 9988876543 344444444 345 443 56899999
Q ss_pred ccCCeEEEeecchhH--HHHHHHHHhcCC
Q 012479 177 SGSDLVLLLISDAAQ--ADNYEKIFSCMK 203 (462)
Q Consensus 177 ~~ADvViLavpd~a~--~~vl~eI~~~Lk 203 (462)
++||+|.-=+....= .+..++....++
T Consensus 220 ~gADvvyTDvWvSMGee~e~~~~~~~~~~ 248 (310)
T COG0078 220 KGADVVYTDVWVSMGEEAEAEERRIAFLP 248 (310)
T ss_pred CCCCEEEecCcccCcchhhhHHHHHhhCC
Confidence 999999866554322 223444444444
No 352
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.45 E-value=0.41 Score=50.59 Aligned_cols=70 Identities=20% Similarity=0.128 Sum_probs=46.8
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCc---hhHHHHHHcCceecCCCcCCHhhhhcc-CCeEE
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS---RSFAEARAAGFTEENGTLGDIYETISG-SDLVL 183 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~---~s~~~A~~~G~~~~d~~~~~~~eav~~-ADvVi 183 (462)
++| ++|.|+|.|.+|.+.|+.|++. |.+|++.++... ...+...+.|+.... -....+...+ .|+||
T Consensus 3 ~~~-k~v~v~G~g~~G~s~a~~l~~~------G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~--~~~~~~~~~~~~d~vV 73 (447)
T PRK02472 3 YQN-KKVLVLGLAKSGYAAAKLLHKL------GANVTVNDGKPFSENPEAQELLEEGIKVIC--GSHPLELLDEDFDLMV 73 (447)
T ss_pred cCC-CEEEEEeeCHHHHHHHHHHHHC------CCEEEEEcCCCccchhHHHHHHhcCCEEEe--CCCCHHHhcCcCCEEE
Confidence 567 9999999999999999999999 998877765422 222334455765310 0123344444 89888
Q ss_pred Eee
Q 012479 184 LLI 186 (462)
Q Consensus 184 Lav 186 (462)
...
T Consensus 74 ~s~ 76 (447)
T PRK02472 74 KNP 76 (447)
T ss_pred ECC
Confidence 754
No 353
>PLN00106 malate dehydrogenase
Probab=92.41 E-value=0.3 Score=50.56 Aligned_cols=70 Identities=11% Similarity=0.122 Sum_probs=43.4
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCCc--EEEEEecCCc--hhHHHHHHcCc-eecC-CCcCCHhhhhccCCeEEE
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGS--RSFAEARAAGF-TEEN-GTLGDIYETISGSDLVLL 184 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~--~s~~~A~~~G~-~~~d-~~~~~~~eav~~ADvViL 184 (462)
.||+|||. |++|.++|..|... ++ ++++.+.... ..++....... ...+ ....+..+++++||+||+
T Consensus 19 ~KV~IiGaaG~VG~~~a~~l~~~------~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVi 92 (323)
T PLN00106 19 FKVAVLGAAGGIGQPLSLLMKMN------PLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVII 92 (323)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEE
Confidence 69999999 99999999999876 55 4555444321 11121111111 1101 012345789999999999
Q ss_pred eec
Q 012479 185 LIS 187 (462)
Q Consensus 185 avp 187 (462)
+.-
T Consensus 93 tAG 95 (323)
T PLN00106 93 PAG 95 (323)
T ss_pred eCC
Confidence 864
No 354
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=92.40 E-value=0.68 Score=48.53 Aligned_cols=37 Identities=16% Similarity=0.202 Sum_probs=30.7
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEec
Q 012479 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLR 148 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r 148 (462)
...|++ ++|.|||+|-.|..++.+|... |+ ++.+.++
T Consensus 130 q~~l~~-~~VlvvG~GG~Gs~ia~~La~~------Gvg~i~lvD~ 167 (376)
T PRK08762 130 QRRLLE-ARVLLIGAGGLGSPAALYLAAA------GVGTLGIVDH 167 (376)
T ss_pred HHHHhc-CcEEEECCCHHHHHHHHHHHHc------CCCeEEEEeC
Confidence 357888 9999999999999999999988 77 4555444
No 355
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=92.40 E-value=0.34 Score=48.84 Aligned_cols=67 Identities=19% Similarity=0.146 Sum_probs=49.7
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecchh
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAA 190 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~a 190 (462)
+++.|||.|-.+.|++-.|.+. |. +|.|.+|..++..+.++..+... ..+. ....+|+||.+||...
T Consensus 123 ~~vlilGaGGaarAi~~aL~~~------g~~~i~i~nR~~~~a~~la~~~~~~~----~~~~--~~~~~dlvINaTp~Gm 190 (272)
T PRK12550 123 LVVALRGSGGMAKAVAAALRDA------GFTDGTIVARNEKTGKALAELYGYEW----RPDL--GGIEADILVNVTPIGM 190 (272)
T ss_pred CeEEEECCcHHHHHHHHHHHHC------CCCEEEEEeCCHHHHHHHHHHhCCcc----hhhc--ccccCCEEEECCcccc
Confidence 6899999999999999999988 87 68888888766666666554321 0011 1246899999999654
No 356
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=92.39 E-value=0.44 Score=49.28 Aligned_cols=94 Identities=10% Similarity=0.031 Sum_probs=54.6
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCC-cEEEEEecCCch-hHHHHHHcCc------e--ecCCCcCC-HhhhhccC
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSD-IVVKVGLRKGSR-SFAEARAAGF------T--EENGTLGD-IYETISGS 179 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G-~~Vivg~r~~~~-s~~~A~~~G~------~--~~d~~~~~-~~eav~~A 179 (462)
+||+|||+ |.+|.-+++.|.+. . ++++...+.... .........+ . ..+-.+.+ ..+...++
T Consensus 1 ~kVaIvGatG~~G~~L~~~l~~~------~~~~l~~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (341)
T TIGR00978 1 MRVAVLGATGLVGQKFVKLLAKH------PYFELAKVVASPRSAGKRYGEAVKWIEPGDMPEYVRDLPIVEPEPVASKDV 74 (341)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCceEEEEEEChhhcCCcchhhccccccCCCccccceeEEEeCCHHHhccC
Confidence 48999995 99999999988765 3 455444333211 0111111111 0 00000111 22355789
Q ss_pred CeEEEeecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 180 DvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
|+|++++|.....++.+.+.. .|..+++.+|-
T Consensus 75 DvVf~a~p~~~s~~~~~~~~~---~G~~VIDlsg~ 106 (341)
T TIGR00978 75 DIVFSALPSEVAEEVEPKLAE---AGKPVFSNASN 106 (341)
T ss_pred CEEEEeCCHHHHHHHHHHHHH---CCCEEEECChh
Confidence 999999999988887765533 57777777664
No 357
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=92.37 E-value=0.9 Score=40.53 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=24.4
Q ss_pred EEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEe
Q 012479 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (462)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~ 147 (462)
+|.|||+|.+|..++++|... |+ ++.+.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~------Gv~~i~ivD 30 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS------GVGKITLID 30 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC------CCCEEEEEc
Confidence 589999999999999999998 77 454443
No 358
>PRK08328 hypothetical protein; Provisional
Probab=92.34 E-value=0.66 Score=45.49 Aligned_cols=28 Identities=21% Similarity=0.404 Sum_probs=26.0
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHHh
Q 012479 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~AiA~~Lrds 133 (462)
...|++ .+|.|||+|-.|..++.+|...
T Consensus 22 q~~L~~-~~VlIiG~GGlGs~ia~~La~~ 49 (231)
T PRK08328 22 QEKLKK-AKVAVVGVGGLGSPVAYYLAAA 49 (231)
T ss_pred HHHHhC-CcEEEECCCHHHHHHHHHHHHc
Confidence 477888 9999999999999999999988
No 359
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.33 E-value=0.33 Score=49.94 Aligned_cols=70 Identities=11% Similarity=0.097 Sum_probs=42.2
Q ss_pred CEEEEEcc-cchHHHHHHHHHHhhhhhcCCc--EEEEEecC--CchhHHHHHHcCc-eecCC-CcCCHhhhhccCCeEEE
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDSLAEAKSDI--VVKVGLRK--GSRSFAEARAAGF-TEENG-TLGDIYETISGSDLVLL 184 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~--~~~s~~~A~~~G~-~~~d~-~~~~~~eav~~ADvViL 184 (462)
+||+|||. |++|.++|..|... ++ ++++.+.+ ....++....... ..... ...++.+.+++||+||+
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~------~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvi 74 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLN------PLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVI 74 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEE
Confidence 58999999 99999999999877 65 44444332 1122232222111 11000 01223678999999998
Q ss_pred eec
Q 012479 185 LIS 187 (462)
Q Consensus 185 avp 187 (462)
+.-
T Consensus 75 taG 77 (310)
T cd01337 75 PAG 77 (310)
T ss_pred eCC
Confidence 864
No 360
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.32 E-value=0.4 Score=51.78 Aligned_cols=71 Identities=25% Similarity=0.240 Sum_probs=47.9
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCc-hhHHHHHHc--CceecCCCcC-CHhhhhccCCeEE
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAA--GFTEENGTLG-DIYETISGSDLVL 183 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~-~s~~~A~~~--G~~~~d~~~~-~~~eav~~ADvVi 183 (462)
+++ ++|.|||+|..|.++|+-|++. |.+|.+.+.... +..+..++. |+... .. ...+.+.++|+||
T Consensus 5 ~~~-~~i~v~G~G~sG~s~a~~L~~~------G~~v~~~D~~~~~~~~~~L~~~~~~~~~~---~g~~~~~~~~~~d~vv 74 (498)
T PRK02006 5 LQG-PMVLVLGLGESGLAMARWCARH------GARLRVADTREAPPNLAALRAELPDAEFV---GGPFDPALLDGVDLVA 74 (498)
T ss_pred cCC-CEEEEEeecHhHHHHHHHHHHC------CCEEEEEcCCCCchhHHHHHhhcCCcEEE---eCCCchhHhcCCCEEE
Confidence 467 8999999999999999999999 998876654322 222333334 43321 12 2345677899999
Q ss_pred Ee--ecc
Q 012479 184 LL--ISD 188 (462)
Q Consensus 184 La--vpd 188 (462)
.. +|+
T Consensus 75 ~sp~I~~ 81 (498)
T PRK02006 75 LSPGLSP 81 (498)
T ss_pred ECCCCCC
Confidence 85 555
No 361
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=92.28 E-value=0.43 Score=52.41 Aligned_cols=75 Identities=19% Similarity=0.184 Sum_probs=51.5
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCC--------------------chhHHHHHHcCceec-
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG--------------------SRSFAEARAAGFTEE- 165 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~--------------------~~s~~~A~~~G~~~~- 165 (462)
.-.| ++|+|||.|..|.+.|..|++. |.+|++..+.. ....+.+++.|+...
T Consensus 134 ~~~g-~~V~VIGaGpaGL~aA~~l~~~------G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~ 206 (564)
T PRK12771 134 PDTG-KRVAVIGGGPAGLSAAYHLRRM------GHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRL 206 (564)
T ss_pred CCCC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEe
Confidence 4568 9999999999999999999998 98887765321 123456777886421
Q ss_pred CCCc-C--CHhhhhccCCeEEEeecc
Q 012479 166 NGTL-G--DIYETISGSDLVLLLISD 188 (462)
Q Consensus 166 d~~~-~--~~~eav~~ADvViLavpd 188 (462)
+... . +.++.-...|+||+++-.
T Consensus 207 ~~~~~~~~~~~~~~~~~D~Vi~AtG~ 232 (564)
T PRK12771 207 GVRVGEDITLEQLEGEFDAVFVAIGA 232 (564)
T ss_pred CCEECCcCCHHHHHhhCCEEEEeeCC
Confidence 1111 1 133334568999999864
No 362
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=92.27 E-value=1.4 Score=46.53 Aligned_cols=169 Identities=15% Similarity=0.172 Sum_probs=91.9
Q ss_pred CEEEEEcc-cchHHHHHHHHH-HhhhhhcCCcE---EEEEecCCchhHHHHHHcCceecCCCcCCH-h-hhhccCCeEEE
Q 012479 112 NQIGVIGW-GSQGPAQAQNLR-DSLAEAKSDIV---VKVGLRKGSRSFAEARAAGFTEENGTLGDI-Y-ETISGSDLVLL 184 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lr-ds~~~~g~G~~---Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~-~-eav~~ADvViL 184 (462)
++|||||+ |..|..+.+.|. ++ .+. ++..... ++... ...|......+.+. + +..++.|++|.
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~------~fp~~~~~~~ss~--~s~g~--~~~f~~~~~~v~~~~~~~~~~~vDivff 70 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEER------DFDAIRPVFFSTS--QLGQA--APSFGGTTGTLQDAFDIDALKALDIIIT 70 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCC------CCccccEEEEEch--hhCCC--cCCCCCCcceEEcCcccccccCCCEEEE
Confidence 58999996 999999999888 54 442 2222111 11111 11111000012222 2 35788999999
Q ss_pred eecchhHHHHHHHHHhcCCCC--cEEEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEE
Q 012479 185 LISDAAQADNYEKIFSCMKPN--SILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSS 262 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~g--aiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~al 262 (462)
+.+.....++..... +.| .+|++.++. + ...+|++.| -|---......... .|+..
T Consensus 71 a~g~~~s~~~~p~~~---~aG~~~~VIDnSSa---~------Rmd~dVPLV--VPeVN~~~i~~~~~-------~gi~~- 128 (366)
T TIGR01745 71 CQGGDYTNEIYPKLR---ESGWQGYWIDAASS---L------RMKDDAVII--LDPVNQDVITDGLN-------NGIRT- 128 (366)
T ss_pred cCCHHHHHHHHHHHH---hCCCCeEEEECChh---h------hcCCCCCEE--eCCcCHHHHHhHHh-------CCcCe-
Confidence 999886666666544 467 678888764 2 112344443 35333233322112 35533
Q ss_pred EeeccCCCHHHHHHHH-HHHHHhCCCcccccchhhhccccchhhhHhHHhHHHHHHHHHHHHHH
Q 012479 263 FAVHQDVDGRATNVAL-GWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFT 325 (462)
Q Consensus 263 iav~qd~tgea~e~a~-al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~paliea~~d~~v 325 (462)
|+ .++++--.+-.++ .|.+..|-.+++-||+.. +||.+...|+.+.+...
T Consensus 129 ia-nPNCst~~l~~aL~pL~~~~~i~~v~VsTyQA------------vSGAG~~g~~eL~~Qt~ 179 (366)
T TIGR01745 129 FV-GGNCTVSLMLMSLGGLFANDLVEWVSVATYQA------------ASGGGARHMRELLTQMG 179 (366)
T ss_pred EE-CcCHHHHHHHHHHHHHHhccCccEEEEEechh------------hhhcCHHHHHHHHHHHH
Confidence 23 4555655554444 444456655677665432 67888877777766654
No 363
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=92.24 E-value=0.62 Score=52.15 Aligned_cols=35 Identities=29% Similarity=0.309 Sum_probs=30.9
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecC
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~ 149 (462)
-+| ++|+|||.|..|.+.|..|++. |++|++..+.
T Consensus 308 ~~~-kkVaIIG~GpaGl~aA~~L~~~------G~~Vtv~e~~ 342 (639)
T PRK12809 308 PRS-EKVAVIGAGPAGLGCADILARA------GVQVDVFDRH 342 (639)
T ss_pred CCC-CEEEEECcCHHHHHHHHHHHHc------CCcEEEEeCC
Confidence 358 9999999999999999999998 9988887654
No 364
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=92.16 E-value=0.97 Score=45.89 Aligned_cols=89 Identities=18% Similarity=0.216 Sum_probs=60.4
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCH-hhhhccCCeEEEeec
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI-YETISGSDLVLLLIS 187 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~-~eav~~ADvViLavp 187 (462)
.| .+|.|+|.|.+|...++-++.. |.+|++..+. ++..+.+++.|... +.+. .+.-+..|+++.++.
T Consensus 165 ~g-~~VlV~G~g~iG~~a~~~a~~~------G~~vi~~~~~-~~~~~~a~~~Ga~~----vi~~~~~~~~~~d~~i~~~~ 232 (329)
T TIGR02822 165 PG-GRLGLYGFGGSAHLTAQVALAQ------GATVHVMTRG-AAARRLALALGAAS----AGGAYDTPPEPLDAAILFAP 232 (329)
T ss_pred CC-CEEEEEcCCHHHHHHHHHHHHC------CCeEEEEeCC-hHHHHHHHHhCCce----eccccccCcccceEEEECCC
Confidence 46 8999999999999888888877 8876655554 44588999999753 2221 111234688887765
Q ss_pred chhHHHHHHHHHhcCCCCcEEEEec
Q 012479 188 DAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 188 d~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
.. +.+....+.++++-.++..+
T Consensus 233 ~~---~~~~~~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 233 AG---GLVPPALEALDRGGVLAVAG 254 (329)
T ss_pred cH---HHHHHHHHhhCCCcEEEEEe
Confidence 43 35666667788877665443
No 365
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=92.14 E-value=0.58 Score=47.58 Aligned_cols=85 Identities=16% Similarity=0.182 Sum_probs=58.5
Q ss_pred CCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEeecch
Q 012479 110 GINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDA 189 (462)
Q Consensus 110 gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLavpd~ 189 (462)
| ++|+|||--.==..+++.|.+. |++|.+..-.++. . ...|... ..+.++++++||+|++.+|+.
T Consensus 2 ~-~~~~v~ggd~r~~~~~~~l~~~------G~~v~~~g~~~~~-~---~~~g~~~----~~~~~~~~~~ad~ii~~~p~~ 66 (296)
T PRK08306 2 G-KHIAVIGGDARQLELIRKLVEL------GAKVSLVGFDQLD-H---GFTGATK----SSSLEEALSDVDVIILPVPGT 66 (296)
T ss_pred C-cEEEEEcCcHHHHHHHHHHHHC------CCEEEEEeccccc-c---ccCCcee----eccHHHHhccCCEEEECCccc
Confidence 5 8999999888888899999998 9988774322211 1 2347664 456788999999999998863
Q ss_pred hH-----HH------HH-HHHHhcCCCCcEEE
Q 012479 190 AQ-----AD------NY-EKIFSCMKPNSILG 209 (462)
Q Consensus 190 a~-----~~------vl-~eI~~~Lk~gaiL~ 209 (462)
.- .. .+ ++....|++|+++.
T Consensus 67 ~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~ 98 (296)
T PRK08306 67 NDEGNVDTVFSNEKLVLTEELLELTPEHCTIF 98 (296)
T ss_pred cCCceeeccccccCCcchHHHHHhcCCCCEEE
Confidence 11 00 11 34667788886544
No 366
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=92.00 E-value=0.5 Score=48.77 Aligned_cols=88 Identities=14% Similarity=0.186 Sum_probs=54.9
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhcCCc---EEEEEecCC--chhHHHHHHcCceecCCCcCCHh-hhhccCCeEEE
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI---VVKVGLRKG--SRSFAEARAAGFTEENGTLGDIY-ETISGSDLVLL 184 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~---~Vivg~r~~--~~s~~~A~~~G~~~~d~~~~~~~-eav~~ADvViL 184 (462)
+||+||| .|..|..+.+-|.+. ++ ++....+.. .+... -.|... ...+.. +.++++|+||+
T Consensus 2 ~~V~IvGAtG~vG~~l~~lL~~~------~hp~~~l~~l~s~~~~g~~l~---~~g~~i---~v~d~~~~~~~~vDvVf~ 69 (334)
T PRK14874 2 YNVAVVGATGAVGREMLNILEER------NFPVDKLRLLASARSAGKELS---FKGKEL---KVEDLTTFDFSGVDIALF 69 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHhC------CCCcceEEEEEccccCCCeee---eCCcee---EEeeCCHHHHcCCCEEEE
Confidence 7999999 689999999999876 55 333333321 12111 112111 022222 34578999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
|+|.....++.+.+. +.|..|++.++-
T Consensus 70 A~g~g~s~~~~~~~~---~~G~~VIDlS~~ 96 (334)
T PRK14874 70 SAGGSVSKKYAPKAA---AAGAVVIDNSSA 96 (334)
T ss_pred CCChHHHHHHHHHHH---hCCCEEEECCch
Confidence 999888888777653 457777776653
No 367
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=91.99 E-value=0.39 Score=51.91 Aligned_cols=70 Identities=27% Similarity=0.300 Sum_probs=48.1
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchh---HHHHHHcCceecCCCcCCHhhhhccCCeEE
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS---FAEARAAGFTEENGTLGDIYETISGSDLVL 183 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s---~~~A~~~G~~~~d~~~~~~~eav~~ADvVi 183 (462)
.+.| |||.|+|+|.-|.+.++.|++. |..|++.+.+.... .......++....+.. +. +-..++|+|+
T Consensus 4 ~~~~-~kv~V~GLG~sG~a~a~~L~~~------G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~-~~-~~~~~~d~vV 74 (448)
T COG0771 4 DFQG-KKVLVLGLGKSGLAAARFLLKL------GAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSH-DD-EDLAEFDLVV 74 (448)
T ss_pred cccC-CEEEEEecccccHHHHHHHHHC------CCeEEEEcCCCCccchhhhhhhccCceeecCcc-ch-hccccCCEEE
Confidence 4457 9999999999999999999999 99998887543321 1222345654321111 12 5677899998
Q ss_pred Ee
Q 012479 184 LL 185 (462)
Q Consensus 184 La 185 (462)
+.
T Consensus 75 ~S 76 (448)
T COG0771 75 KS 76 (448)
T ss_pred EC
Confidence 74
No 368
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=91.96 E-value=0.63 Score=47.88 Aligned_cols=69 Identities=14% Similarity=0.099 Sum_probs=50.0
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCch--hH----HHHHHcC-ceecCCCcCCHhhhhcc
Q 012479 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR--SF----AEARAAG-FTEENGTLGDIYETISG 178 (462)
Q Consensus 107 ~l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~--s~----~~A~~~G-~~~~d~~~~~~~eav~~ 178 (462)
.++| +||++||- +++..|++..+..- |.++.+...+.-. .. +.+++.| +.. ..++++++++
T Consensus 150 ~l~g-~~va~vGd~~rv~~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~----~~d~~~av~~ 218 (311)
T PRK14804 150 PLNQ-KQLTYIGVHNNVVNSLIGITAAL------GIHLTLVTPIAAKENIHAQTVERAKKKGTLSW----EMNLHKAVSH 218 (311)
T ss_pred CCCC-CEEEEECCCCcHHHHHHHHHHHc------CCEEEEECCCCccHHHHHHHHHHHHhcCCeEE----EeCHHHHhCC
Confidence 4788 99999997 68999999999877 8888776554311 11 3344444 332 4689999999
Q ss_pred CCeEEEee
Q 012479 179 SDLVLLLI 186 (462)
Q Consensus 179 ADvViLav 186 (462)
||+|..-+
T Consensus 219 aDvvy~d~ 226 (311)
T PRK14804 219 ADYVYTDT 226 (311)
T ss_pred CCEEEeee
Confidence 99999854
No 369
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=91.88 E-value=0.96 Score=47.23 Aligned_cols=87 Identities=11% Similarity=0.125 Sum_probs=53.0
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCC-------------------chhHHHHHH-----
Q 012479 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEARA----- 159 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~-------------------~~s~~~A~~----- 159 (462)
...|++ .+|.|||+|-.|..++++|... |+ ++.+.++.. .+....++.
T Consensus 23 q~~L~~-~~VlivG~GGlGs~~a~~La~~------Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~n 95 (355)
T PRK05597 23 QQSLFD-AKVAVIGAGGLGSPALLYLAGA------GVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALN 95 (355)
T ss_pred HHHHhC-CeEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHC
Confidence 477888 9999999999999999999988 76 444433221 111111111
Q ss_pred cCceec--CCCc--CCHhhhhccCCeEEEeecchhHHHHHHHH
Q 012479 160 AGFTEE--NGTL--GDIYETISGSDLVLLLISDAAQADNYEKI 198 (462)
Q Consensus 160 ~G~~~~--d~~~--~~~~eav~~ADvViLavpd~a~~~vl~eI 198 (462)
..+... .... .+..+.++++|+||.++-+.....++.+.
T Consensus 96 p~v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d~~~~r~~~n~~ 138 (355)
T PRK05597 96 PDVKVTVSVRRLTWSNALDELRDADVILDGSDNFDTRHLASWA 138 (355)
T ss_pred CCcEEEEEEeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHH
Confidence 111110 0111 12346789999999998766555566654
No 370
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=91.84 E-value=3.1 Score=44.48 Aligned_cols=174 Identities=20% Similarity=0.133 Sum_probs=100.4
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHH--HHHHc--Cceec----------------CCCc
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFA--EARAA--GFTEE----------------NGTL 169 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~--~A~~~--G~~~~----------------d~~~ 169 (462)
|.+|-|+|.|..+--+|..++.. +- +|=+..|.+.++.. .+.+. +.... |...
T Consensus 1 m~~VLI~GtGPvAiQLAv~lk~~------~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~ 74 (429)
T PF10100_consen 1 MGNVLIVGTGPVAIQLAVILKKH------GNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVF 74 (429)
T ss_pred CCceEEEcCCHHHHHHHHHHHhc------cCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhh
Confidence 57899999999999999999975 32 34444554433332 22222 21110 1123
Q ss_pred CCHhhhhccCCeEEEeecchhHHHHHHHHHhc-CCC-CcEEEEeccchHHHhhhcc-ccCCCCccEEe----------cc
Q 012479 170 GDIYETISGSDLVLLLISDAAQADNYEKIFSC-MKP-NSILGLSHGFLLGHLQSMG-LDFPKNIGVIA----------VC 236 (462)
Q Consensus 170 ~~~~eav~~ADvViLavpd~a~~~vl~eI~~~-Lk~-gaiL~~a~G~~i~~~~~~~-i~~p~~v~VV~----------v~ 236 (462)
.+.+++..+=|.+|||||-++..+|+++|.+. |+. ..+|.++..|.-+.+.+.. .....++.||. +.
T Consensus 75 ~~~~~i~g~WdtlILavtaDAY~~VL~ql~~~~L~~vk~iVLvSPtfGS~~lv~~~l~~~~~~~EVISFStY~gdTr~~d 154 (429)
T PF10100_consen 75 QDYEEIEGEWDTLILAVTADAYLDVLQQLPWEVLKRVKSIVLVSPTFGSHLLVKGFLNDLGPDAEVISFSTYYGDTRWSD 154 (429)
T ss_pred cCHHHhcccccEEEEEechHHHHHHHHhcCHHHHhhCCEEEEECcccchHHHHHHHHHhcCCCceEEEeecccccceecc
Confidence 45667777789999999999999999976432 333 3356666655322111100 02233677776 33
Q ss_pred cCCCchhhHHhhhcCccccCCCceEEEeeccCCCHHHHHHHHHHHHHhCCCc-ccccchhhhccc
Q 012479 237 PKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPF-TFATTLEQEYRS 300 (462)
Q Consensus 237 Pngpg~~vr~lf~~G~~~~G~Gv~aliav~qd~tgea~e~a~al~~aiG~~~-viettf~~E~~~ 300 (462)
...|-++.-...++ ..++. ..+.....++....+++.+|-.. +..+-++.|.+.
T Consensus 155 ~~~~~~vlt~~vK~---------kiYig-St~~~s~~~~~l~~~~~~~gI~~~~~~~pl~AE~rN 209 (429)
T PF10100_consen 155 GEQPNRVLTTAVKK---------KIYIG-STHSNSPELDKLCRLLAQLGIQLEVMDNPLEAESRN 209 (429)
T ss_pred CCCcceehhhhhhc---------eEEEE-eCCCCChHHHHHHHHHHHcCCeEEEeCChHhhhhcc
Confidence 33443443333331 22233 33455578888889999999753 455555556543
No 371
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=91.81 E-value=0.51 Score=49.02 Aligned_cols=70 Identities=19% Similarity=0.149 Sum_probs=49.2
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHHhhhhhcCCcEEEEEecCC----chhHH----HHHHcCceecCCCcCCHhhhh
Q 012479 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETI 176 (462)
Q Consensus 107 ~l~gikkIgIIG~G--~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~----~~s~~----~A~~~G~~~~d~~~~~~~eav 176 (462)
.++| .||++||-+ +...|++..+... |.++.+...+. +...+ .+++.|.... ...++++++
T Consensus 152 ~l~g-~kia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~ea~ 222 (332)
T PRK04284 152 PYKD-IKFTYVGDGRNNVANALMQGAAIM------GMDFHLVCPKELNPDDELLNKCKEIAAETGGKIT--ITDDIDEGV 222 (332)
T ss_pred CcCC-cEEEEecCCCcchHHHHHHHHHHc------CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 4788 999999975 8888999888877 88877765431 22232 2344563210 157899999
Q ss_pred ccCCeEEEe
Q 012479 177 SGSDLVLLL 185 (462)
Q Consensus 177 ~~ADvViLa 185 (462)
++||+|...
T Consensus 223 ~~aDvvy~~ 231 (332)
T PRK04284 223 KGSDVIYTD 231 (332)
T ss_pred CCCCEEEEC
Confidence 999999985
No 372
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=91.76 E-value=0.14 Score=47.03 Aligned_cols=85 Identities=16% Similarity=0.253 Sum_probs=48.1
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
+..+| ++|++||+ +.+ ++..|+.. +.++.+.+++... ... ...++. ....++++++||+|++.
T Consensus 7 ~~~~~-~~V~~VG~--f~P-~~~~l~~~------~~~v~v~d~~~~~-~~~-~~~~~~-----~~~~~~~l~~aD~viiT 69 (147)
T PF04016_consen 7 EIGPG-DKVGMVGY--FQP-LVEKLKER------GAEVRVFDLNPDN-IGE-EPGDVP-----DEDAEEILPWADVVIIT 69 (147)
T ss_dssp CTTTT-SEEEEES----HC-CHHHHCCC------CSEEEEEESSGGG---S-SCT-EE-----GGGHHHHGGG-SEEEEE
T ss_pred hhcCC-CEEEEEcC--cHH-HHHHHhcC------CCCEEEEECCCCC-CCC-CCCcCC-----HHHHHHHHccCCEEEEE
Confidence 66778 99999997 323 67777766 7788888776432 111 112232 35678899999998875
Q ss_pred ecchhHHHHHHHHHhcCCCCcEE
Q 012479 186 ISDAAQADNYEKIFSCMKPNSIL 208 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~gaiL 208 (462)
-. ...-..+++|..+.++++.+
T Consensus 70 Gs-TlvN~Ti~~iL~~~~~~~~v 91 (147)
T PF04016_consen 70 GS-TLVNGTIDDILELARNAREV 91 (147)
T ss_dssp CH-HCCTTTHHHHHHHTTTSSEE
T ss_pred ee-eeecCCHHHHHHhCccCCeE
Confidence 33 22223444444444444433
No 373
>PRK12562 ornithine carbamoyltransferase subunit F; Provisional
Probab=91.55 E-value=0.67 Score=48.27 Aligned_cols=71 Identities=17% Similarity=0.164 Sum_probs=49.4
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHHhhhhhcCCcEEEEEecCC----chhHH----HHHHcCceecCCCcCCHhhhh
Q 012479 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETI 176 (462)
Q Consensus 107 ~l~gikkIgIIG~G--~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~----~~s~~----~A~~~G~~~~d~~~~~~~eav 176 (462)
.++| .||++||-+ ++..|++..+..- |.++.+..... ....+ .+++.|.... ...++++++
T Consensus 153 ~l~g-l~va~vGD~~~~v~~S~~~~~~~~------G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~ 223 (334)
T PRK12562 153 AFNE-MTLVYAGDARNNMGNSMLEAAALT------GLDLRLVAPQACWPEASLVAECSALAQKHGGKIT--LTEDIAAGV 223 (334)
T ss_pred CcCC-cEEEEECCCCCCHHHHHHHHHHHc------CCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 4678 999999976 7899999988877 88877654332 12222 2344453210 147899999
Q ss_pred ccCCeEEEee
Q 012479 177 SGSDLVLLLI 186 (462)
Q Consensus 177 ~~ADvViLav 186 (462)
++||+|....
T Consensus 224 ~~aDvvyt~~ 233 (334)
T PRK12562 224 KGADFIYTDV 233 (334)
T ss_pred CCCCEEEEcC
Confidence 9999999864
No 374
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=91.51 E-value=0.82 Score=46.66 Aligned_cols=66 Identities=23% Similarity=0.254 Sum_probs=40.1
Q ss_pred EEcccchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHHHH----cCceecC-CCcCCHhhhhccCCeEEEeec
Q 012479 116 VIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARA----AGFTEEN-GTLGDIYETISGSDLVLLLIS 187 (462)
Q Consensus 116 IIG~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A~~----~G~~~~d-~~~~~~~eav~~ADvViLavp 187 (462)
|||.|.+|.++|..|... ++ ++++.+.........+.+ .-+...+ ....+..+.+++||+||++.-
T Consensus 1 iIGaG~VG~~~a~~l~~~------~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag 73 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQ------GIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAG 73 (299)
T ss_pred CCCcCHHHHHHHHHHHhc------CCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCC
Confidence 799999999999999877 65 455555443322333322 1111000 001234578999999999764
No 375
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=91.43 E-value=0.63 Score=45.97 Aligned_cols=28 Identities=25% Similarity=0.466 Sum_probs=26.1
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHHh
Q 012479 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~AiA~~Lrds 133 (462)
.+.|++ .+|.|||+|-+|..++.+|..+
T Consensus 19 q~~L~~-~~VlvvG~GglGs~va~~La~~ 46 (240)
T TIGR02355 19 QEALKA-SRVLIVGLGGLGCAASQYLAAA 46 (240)
T ss_pred HHHHhC-CcEEEECcCHHHHHHHHHHHHc
Confidence 467888 9999999999999999999988
No 376
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=91.31 E-value=1.3 Score=45.52 Aligned_cols=93 Identities=17% Similarity=0.167 Sum_probs=57.4
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-CCC-cCCHhhhhccCCeEEEee
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-LGDIYETISGSDLVLLLI 186 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~-~~~~~eav~~ADvViLav 186 (462)
.| ++|.|+|.|.+|...++-++.. |.+|++......+..+.+++.|.... +.. .....+.....|+||-++
T Consensus 183 ~g-~~VlV~G~G~vG~~avq~Ak~~------Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~ 255 (360)
T PLN02586 183 PG-KHLGVAGLGGLGHVAVKIGKAF------GLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTV 255 (360)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECC
Confidence 57 8999999999999999999888 88876655554555566677786320 000 001122223568888877
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
... ..+++....++++-.++..
T Consensus 256 g~~---~~~~~~~~~l~~~G~iv~v 277 (360)
T PLN02586 256 SAV---HALGPLLGLLKVNGKLITL 277 (360)
T ss_pred CCH---HHHHHHHHHhcCCcEEEEe
Confidence 632 1334444556666554433
No 377
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=91.23 E-value=0.44 Score=49.24 Aligned_cols=71 Identities=20% Similarity=0.160 Sum_probs=41.2
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc--Cceec--CCC-cC-CHhhhhccCCeEEEe
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEE--NGT-LG-DIYETISGSDLVLLL 185 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~--G~~~~--d~~-~~-~~~eav~~ADvViLa 185 (462)
+||+|||.|.+|.+.|..|... +.+.++++.+.......-.|.+. +.... +.. .. ...+.+++||+|++.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~----~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvit 76 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQ----GLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVIT 76 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcc----cccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEe
Confidence 5899999999999999999655 11225555554422222222211 11000 000 11 225678999999998
Q ss_pred e
Q 012479 186 I 186 (462)
Q Consensus 186 v 186 (462)
-
T Consensus 77 A 77 (313)
T COG0039 77 A 77 (313)
T ss_pred C
Confidence 7
No 378
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.21 E-value=0.67 Score=47.34 Aligned_cols=80 Identities=11% Similarity=0.165 Sum_probs=55.5
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..++| |++.|||-+ ..|..++.-|.+..+ ..+-.|.+...+ +.+..+.+++||+||.
T Consensus 149 i~l~G-k~vvViGrS~iVGkPla~lL~~~~~--~~~AtVtvchs~-------------------T~~l~~~~~~ADIvV~ 206 (287)
T PRK14181 149 IPLHG-RHVAIVGRSNIVGKPLAALLMQKHP--DTNATVTLLHSQ-------------------SENLTEILKTADIIIA 206 (287)
T ss_pred CCCCC-CEEEEECCCccchHHHHHHHHhCcC--CCCCEEEEeCCC-------------------CCCHHHHHhhCCEEEE
Confidence 46889 999999976 789999999976500 001245543211 3467788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++.-.. ++. ..++|+|++|++++
T Consensus 207 AvG~p~---~i~--~~~ik~GavVIDvG 229 (287)
T PRK14181 207 AIGVPL---FIK--EEMIAEKAVIVDVG 229 (287)
T ss_pred ccCCcC---ccC--HHHcCCCCEEEEec
Confidence 997542 232 34578999988875
No 379
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=91.16 E-value=1.2 Score=46.49 Aligned_cols=95 Identities=13% Similarity=0.148 Sum_probs=51.7
Q ss_pred CCEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH----cCceecCCCcCCHhhh-hccCCeEEE
Q 012479 111 INQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGDIYET-ISGSDLVLL 184 (462)
Q Consensus 111 ikkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~----~G~~~~d~~~~~~~ea-v~~ADvViL 184 (462)
++||+||| -|--|.-+.+-|... ..+++.....+..+-...... .|.....-...+.++. ..+||+||+
T Consensus 2 ~~kV~IvGasGYtG~EL~rlL~~H-----p~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFl 76 (349)
T COG0002 2 MIKVGIVGASGYTGLELLRLLAGH-----PDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFL 76 (349)
T ss_pred CceEEEEcCCCCcHHHHHHHHhcC-----CCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEE
Confidence 47999999 567777766666543 134543332211110111111 1221000002233443 445899999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEecc
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSHG 213 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~G 213 (462)
|+|+..-.++..++.. .|..|+|.++
T Consensus 77 alPhg~s~~~v~~l~~---~g~~VIDLSa 102 (349)
T COG0002 77 ALPHGVSAELVPELLE---AGCKVIDLSA 102 (349)
T ss_pred ecCchhHHHHHHHHHh---CCCeEEECCc
Confidence 9999988888877643 4555777766
No 380
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.06 E-value=0.64 Score=50.10 Aligned_cols=69 Identities=17% Similarity=0.239 Sum_probs=45.8
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhH---HHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF---AEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~---~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
++| ++|+|+|+|.-|.+.++-|++. |.+|++.+.+..... ...++.+... . .....+.+.++|+||.
T Consensus 6 ~~~-~~v~v~G~G~sG~~~~~~l~~~------g~~v~~~d~~~~~~~~~~~~l~~~~~~~-~--~~~~~~~~~~~d~vV~ 75 (468)
T PRK04690 6 LEG-RRVALWGWGREGRAAYRALRAH------LPAQALTLFCNAVEAREVGALADAALLV-E--TEASAQRLAAFDVVVK 75 (468)
T ss_pred cCC-CEEEEEccchhhHHHHHHHHHc------CCEEEEEcCCCcccchHHHHHhhcCEEE-e--CCCChHHccCCCEEEE
Confidence 568 9999999999999999999999 999888774322111 1222222221 1 1223456778999887
Q ss_pred ee
Q 012479 185 LI 186 (462)
Q Consensus 185 av 186 (462)
.-
T Consensus 76 Sp 77 (468)
T PRK04690 76 SP 77 (468)
T ss_pred CC
Confidence 53
No 381
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=91.05 E-value=0.39 Score=49.96 Aligned_cols=168 Identities=15% Similarity=0.061 Sum_probs=89.1
Q ss_pred CEEEEEcc-cchHHHHHHHHHHh-hhhhcCCcEEEEEec--CCchhHHHHHHcCceecCCCcCCHhhh-hccCCeEEEee
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRDS-LAEAKSDIVVKVGLR--KGSRSFAEARAAGFTEENGTLGDIYET-ISGSDLVLLLI 186 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrds-~~~~g~G~~Vivg~r--~~~~s~~~A~~~G~~~~d~~~~~~~ea-v~~ADvViLav 186 (462)
.+|+|||. |..|.-+.+-|.++ ++ ..++..... ...+.....-. ... +.+.++. ..++|+||+++
T Consensus 5 ~~vaIvGATG~vG~ellrlL~~~~hP----~~~l~~laS~~saG~~~~~~~~-~~~-----v~~~~~~~~~~~Dvvf~a~ 74 (336)
T PRK08040 5 WNIALLGATGAVGEALLELLAERQFP----VGELYALASEESAGETLRFGGK-SVT-----VQDAAEFDWSQAQLAFFVA 74 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhcCCCC----ceEEEEEEccCcCCceEEECCc-ceE-----EEeCchhhccCCCEEEECC
Confidence 79999996 99999999988874 11 124332221 11222221000 112 2233333 26899999999
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEEEeec
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH 266 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~aliav~ 266 (462)
|.....++.+++. +.|..|+|.++- + .+.++++ .+-|---.... +.++ ..+ +|+ .
T Consensus 75 p~~~s~~~~~~~~---~~g~~VIDlS~~---f------Rl~~~vP--~~lPEvn~~~l-~~i~--------~~~-iIA-n 129 (336)
T PRK08040 75 GREASAAYAEEAT---NAGCLVIDSSGL---F------ALEPDVP--LVVPEVNPFVL-ADYR--------NRN-IIA-V 129 (336)
T ss_pred CHHHHHHHHHHHH---HCCCEEEECChH---h------cCCCCCc--eEccccCHHHH-hhhc--------cCC-EEE-C
Confidence 9987777777654 358888888764 1 1111322 22332221111 1111 112 344 5
Q ss_pred cCCCHHHHHHHHHHHHHhCCCcccccchhhhccccchhhhHhHHhHHHHHHHHHHHHHH
Q 012479 267 QDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFT 325 (462)
Q Consensus 267 qd~tgea~e~a~al~~aiG~~~viettf~~E~~~dlfgeqtvL~G~~paliea~~d~~v 325 (462)
+++..-++-+++.=+...|.. +.. ..+.-...||++-..++.+.+...
T Consensus 130 PgC~~t~~~laL~PL~~~~~i--------~~v---iV~t~qgvSGAG~~~~~~L~~qt~ 177 (336)
T PRK08040 130 ADSLTSQLLTAIKPLIDQAGL--------SRL---HVTNLLSASAHGKAAVDALAGQSA 177 (336)
T ss_pred CCHHHHHHHHHHHHHHHhCCC--------eEE---EEEeeccccccChhhHHHHHHHHH
Confidence 666666666665555554433 111 222334678888887777665544
No 382
>CHL00194 ycf39 Ycf39; Provisional
Probab=91.00 E-value=0.82 Score=46.02 Aligned_cols=69 Identities=17% Similarity=0.184 Sum_probs=47.2
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcC---CHhhhhccCCeEEEeec
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLG---DIYETISGSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~---~~~eav~~ADvViLavp 187 (462)
|||.|+| .|.+|..+++.|.+. |++|++..|+.++. ......|+....+... +..++++++|+||.++.
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~------g~~V~~l~R~~~~~-~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDE------GYQVRCLVRNLRKA-SFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC------CCeEEEEEcChHHh-hhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 5899999 599999999999998 99988777764332 2112235432111122 34567899999998764
No 383
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=90.98 E-value=0.99 Score=38.94 Aligned_cols=82 Identities=23% Similarity=0.287 Sum_probs=48.0
Q ss_pred cccchHHHHHHHHHHhhhhhcCCcEEEEEecCC---chhHHHHHHcCceecCCCcCCHhhhhc--cCCeEEEeecchhHH
Q 012479 118 GWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG---SRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLLLISDAAQA 192 (462)
Q Consensus 118 G~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~---~~s~~~A~~~G~~~~d~~~~~~~eav~--~ADvViLavpd~a~~ 192 (462)
|+|++|.+++..|...-+. .+++++...+++ ...+......... +.+.++.+. +.|+||=|++++...
T Consensus 1 G~G~VG~~l~~~l~~~~~~--~~~~v~~v~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~dvvVE~t~~~~~~ 73 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQER--IDLEVVGVADRSMLISKDWAASFPDEAF-----TTDLEELIDDPDIDVVVECTSSEAVA 73 (117)
T ss_dssp --SHHHHHHHHHHHHTHHH--CEEEEEEEEESSEEEETTHHHHHTHSCE-----ESSHHHHHTHTT-SEEEE-SSCHHHH
T ss_pred CCCHHHHHHHHHHHhCccc--CCEEEEEEEECCchhhhhhhhhcccccc-----cCCHHHHhcCcCCCEEEECCCchHHH
Confidence 8999999999999876111 134443333332 1222222222223 578888888 899999999998887
Q ss_pred HHHHHHHhcCCCCcEEE
Q 012479 193 DNYEKIFSCMKPNSILG 209 (462)
Q Consensus 193 ~vl~eI~~~Lk~gaiL~ 209 (462)
+.+.++ |+.|.-|+
T Consensus 74 ~~~~~~---L~~G~~VV 87 (117)
T PF03447_consen 74 EYYEKA---LERGKHVV 87 (117)
T ss_dssp HHHHHH---HHTTCEEE
T ss_pred HHHHHH---HHCCCeEE
Confidence 777654 34566443
No 384
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=90.83 E-value=2.4 Score=44.87 Aligned_cols=170 Identities=15% Similarity=0.200 Sum_probs=91.9
Q ss_pred CCEEEEEcc-cchHHHHHH-HHHHhhhhhcCCcE---EEEEecCCchhHHHHHHcCceecCCCcCC--HhhhhccCCeEE
Q 012479 111 INQIGVIGW-GSQGPAQAQ-NLRDSLAEAKSDIV---VKVGLRKGSRSFAEARAAGFTEENGTLGD--IYETISGSDLVL 183 (462)
Q Consensus 111 ikkIgIIG~-G~mG~AiA~-~Lrds~~~~g~G~~---Vivg~r~~~~s~~~A~~~G~~~~d~~~~~--~~eav~~ADvVi 183 (462)
|++|||||. |..|.-+.+ -|.+. .+. +.. .... ++-..- ..|......+.+ ..+..+++|+||
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~------~f~~~~l~~-~ss~-~sg~~~--~~f~g~~~~v~~~~~~~~~~~~Divf 70 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEEN------DFDLIEPVF-FSTS-QAGGAA--PSFGGKEGTLQDAFDIDALKKLDIII 70 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCC------CCCcCcEEE-ecch-hhCCcc--cccCCCcceEEecCChhHhcCCCEEE
Confidence 478999996 999999997 55555 443 433 2221 111110 111100001111 124457899999
Q ss_pred EeecchhHHHHHHHHHhcCCCC--cEEEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceE
Q 012479 184 LLISDAAQADNYEKIFSCMKPN--SILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINS 261 (462)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~g--aiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~a 261 (462)
+++|.....++..++.. .| .+|+|.+|. + ...+ +|..+-|--.....+..-. .|+..
T Consensus 71 ~a~~~~~s~~~~~~~~~---aG~~~~VID~Ss~---f------R~~~--dvplvvPEvN~e~i~~~~~-------~g~~i 129 (369)
T PRK06598 71 TCQGGDYTNEVYPKLRA---AGWQGYWIDAAST---L------RMKD--DAIIILDPVNRDVIDDALA-------NGVKT 129 (369)
T ss_pred ECCCHHHHHHHHHHHHh---CCCCeEEEECChH---H------hCCC--CCcEEcCCcCHHHHHhhhh-------cCCCE
Confidence 99999877777776543 57 567887764 2 1112 4445556443333322111 24433
Q ss_pred EEeeccCCCHHHHHHHHHHHHHhCCC-cccccchhhhccccchhhhHhHHhHHHHHHHHHHHHHH
Q 012479 262 SFAVHQDVDGRATNVALGWSVALGSP-FTFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFT 325 (462)
Q Consensus 262 liav~qd~tgea~e~a~al~~aiG~~-~viettf~~E~~~dlfgeqtvL~G~~paliea~~d~~v 325 (462)
|+ .++++.-+.-+++.=+...|.. +++-+| -..+||++...|+.+.+...
T Consensus 130 -Ia-nPnC~tt~~~laL~PL~~~~~i~~viVst------------~qavSGAG~~g~~eL~~qt~ 180 (369)
T PRK06598 130 -FV-GGNCTVSLMLMALGGLFKNDLVEWVSVMT------------YQAASGAGARNMRELLTQMG 180 (369)
T ss_pred -EE-cCChHHHHHHHHHHHHHhcCCceEEEEEe------------eecccccCHHHHHHHHHHHH
Confidence 33 5566666666666555555543 233332 23477888877766666544
No 385
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=90.81 E-value=0.82 Score=47.45 Aligned_cols=93 Identities=14% Similarity=0.104 Sum_probs=53.3
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHH-HHHHcCcee--------cCCC--cCCHhhhhccC
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA-EARAAGFTE--------ENGT--LGDIYETISGS 179 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~-~A~~~G~~~--------~d~~--~~~~~eav~~A 179 (462)
.||+|+| .|.+|..+.+.|.+. ..++++...+..+..-+ .....++.. .+-. ..+. +.++++
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~-----p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~ 77 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANH-----PWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDP-EAVDDV 77 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcC-----CCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCH-HHhcCC
Confidence 6899998 899999999988865 02354433233211100 110011100 0000 1133 445789
Q ss_pred CeEEEeecchhHHHHHHHHHhcCCCCcEEEEecc
Q 012479 180 DLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213 (462)
Q Consensus 180 DvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~G 213 (462)
|+|++++|.....++.+.+.. .|..+++.+|
T Consensus 78 DvVf~a~p~~~s~~~~~~~~~---~G~~vIDls~ 108 (349)
T PRK08664 78 DIVFSALPSDVAGEVEEEFAK---AGKPVFSNAS 108 (349)
T ss_pred CEEEEeCChhHHHHHHHHHHH---CCCEEEECCc
Confidence 999999999877777655433 4666666665
No 386
>PRK01713 ornithine carbamoyltransferase; Provisional
Probab=90.78 E-value=0.72 Score=47.94 Aligned_cols=71 Identities=17% Similarity=0.121 Sum_probs=48.9
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHHhhhhhcCCcEEEEEecCC----chhH----HHHHHcCceecCCCcCCHhhhh
Q 012479 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSF----AEARAAGFTEENGTLGDIYETI 176 (462)
Q Consensus 107 ~l~gikkIgIIG~G--~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~----~~s~----~~A~~~G~~~~d~~~~~~~eav 176 (462)
.++| .||++||-+ ++..|++..+... |.++.+...+. .... +.+++.|.... ...++++++
T Consensus 153 ~l~g-l~ia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~ 223 (334)
T PRK01713 153 PLSE-ISYVYIGDARNNMGNSLLLIGAKL------GMDVRICAPKALLPEASLVEMCEKFAKESGARIT--VTDDIDKAV 223 (334)
T ss_pred CcCC-cEEEEECCCccCHHHHHHHHHHHc------CCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 4788 999999986 6788888888877 88877765431 1112 23344563210 157899999
Q ss_pred ccCCeEEEee
Q 012479 177 SGSDLVLLLI 186 (462)
Q Consensus 177 ~~ADvViLav 186 (462)
++||+|..-+
T Consensus 224 ~~aDvVyt~~ 233 (334)
T PRK01713 224 KGVDFVHTDV 233 (334)
T ss_pred CCCCEEEEcc
Confidence 9999999743
No 387
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=90.63 E-value=2.5 Score=44.09 Aligned_cols=148 Identities=14% Similarity=0.147 Sum_probs=80.9
Q ss_pred CEEEEEc-ccchHHHHHHHHHHhhhhhcCCc--E-EEEEe--cCCchhHHHHHHcCceecCCCcCC---HhhhhccCCeE
Q 012479 112 NQIGVIG-WGSQGPAQAQNLRDSLAEAKSDI--V-VKVGL--RKGSRSFAEARAAGFTEENGTLGD---IYETISGSDLV 182 (462)
Q Consensus 112 kkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~--~-Vivg~--r~~~~s~~~A~~~G~~~~d~~~~~---~~eav~~ADvV 182 (462)
++|||+| .|..|.-+.+.|.++ .+ . +.+.- |+..+.. ..-.|... .+.+ .....+++|++
T Consensus 2 ~~VavvGATG~VG~~~~~~L~e~------~f~~~~~~~~AS~rSaG~~~--~~f~~~~~---~v~~~~~~~~~~~~~Div 70 (334)
T COG0136 2 LNVAVLGATGAVGQVLLELLEER------HFPFEELVLLASARSAGKKY--IEFGGKSI---GVPEDAADEFVFSDVDIV 70 (334)
T ss_pred cEEEEEeccchHHHHHHHHHHhc------CCCcceEEEEecccccCCcc--ccccCccc---cCccccccccccccCCEE
Confidence 7899998 699999999999886 43 2 22222 2222211 11112211 0111 12345689999
Q ss_pred EEeecchhHHHHHHHHHhcCCCCcEEEEeccchHHHhhhccccCCCCccEEecccCCCchhhHHhhhcCccccCCCceEE
Q 012479 183 LLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSS 262 (462)
Q Consensus 183 iLavpd~a~~~vl~eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngpg~~vr~lf~~G~~~~G~Gv~al 262 (462)
+.+.+.....++.++.. +.|.+|++.++. + ..-+|+++| -|---.... ..|.+ +| .+
T Consensus 71 f~~ag~~~s~~~~p~~~---~~G~~VIdnsSa---~------Rm~~DVPLV--VPeVN~~~l-~~~~~------rg--~I 127 (334)
T COG0136 71 FFAAGGSVSKEVEPKAA---EAGCVVIDNSSA---F------RMDPDVPLV--VPEVNPEHL-IDYQK------RG--FI 127 (334)
T ss_pred EEeCchHHHHHHHHHHH---HcCCEEEeCCcc---c------ccCCCCCEe--cCCcCHHHH-Hhhhh------CC--CE
Confidence 99999888877777665 468888888764 1 112344433 443222111 12221 35 33
Q ss_pred EeeccCCCHHHHHHHH-HHHHHhCCCcccccch
Q 012479 263 FAVHQDVDGRATNVAL-GWSVALGSPFTFATTL 294 (462)
Q Consensus 263 iav~qd~tgea~e~a~-al~~aiG~~~viettf 294 (462)
|+ .+|++--.+-.++ -|....|..++.-||.
T Consensus 128 ia-npNCst~~l~~aL~PL~~~~~i~~v~VsTy 159 (334)
T COG0136 128 IA-NPNCSTIQLVLALKPLHDAFGIKRVVVSTY 159 (334)
T ss_pred EE-CCChHHHHHHHHHHHHHhhcCceEEEEEEe
Confidence 44 6666655554444 4455566555655543
No 388
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=90.63 E-value=1.7 Score=44.32 Aligned_cols=89 Identities=20% Similarity=0.182 Sum_probs=56.1
Q ss_pred CCCCEEEEEcccchHHHHHHHHHH-hhhhhcCC-cEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhc--cCCeEEE
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRD-SLAEAKSD-IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETIS--GSDLVLL 184 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrd-s~~~~g~G-~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~--~ADvViL 184 (462)
.| .+|.|+|.|.+|...++-++. . | .+|++..+. +...+.+++.|... ..++..+ ..|+||=
T Consensus 163 ~g-~~VlV~G~G~vGl~~~~~a~~~~------g~~~vi~~~~~-~~k~~~a~~~~~~~------~~~~~~~~~g~d~viD 228 (341)
T cd08237 163 DR-NVIGVWGDGNLGYITALLLKQIY------PESKLVVFGKH-QEKLDLFSFADETY------LIDDIPEDLAVDHAFE 228 (341)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHhc------CCCcEEEEeCc-HhHHHHHhhcCcee------ehhhhhhccCCcEEEE
Confidence 36 899999999999988887775 3 3 356555444 44466676655431 1112222 4799998
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
++........+++....++++-.++..
T Consensus 229 ~~G~~~~~~~~~~~~~~l~~~G~iv~~ 255 (341)
T cd08237 229 CVGGRGSQSAINQIIDYIRPQGTIGLM 255 (341)
T ss_pred CCCCCccHHHHHHHHHhCcCCcEEEEE
Confidence 887433344566666678887665543
No 389
>PRK10537 voltage-gated potassium channel; Provisional
Probab=90.56 E-value=1.4 Score=46.95 Aligned_cols=91 Identities=12% Similarity=0.038 Sum_probs=53.8
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHh---h-hhccCCeEEEeec
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY---E-TISGSDLVLLLIS 187 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~---e-av~~ADvViLavp 187 (462)
..|-|+|+|.+|..+++.|++. |.++++.+.. + .+...+.|.....+...+.+ + -+++|+.|+++++
T Consensus 241 ~HvII~G~g~lg~~v~~~L~~~------g~~vvVId~d--~-~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~ 311 (393)
T PRK10537 241 DHFIICGHSPLAINTYLGLRQR------GQAVTVIVPL--G-LEHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRD 311 (393)
T ss_pred CeEEEECCChHHHHHHHHHHHC------CCCEEEEECc--h-hhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCC
Confidence 5799999999999999999988 8777665543 1 23333344321111122222 1 3678999999998
Q ss_pred chhHHHHHHHHHhcCCCC-cEEEEe
Q 012479 188 DAAQADNYEKIFSCMKPN-SILGLS 211 (462)
Q Consensus 188 d~a~~~vl~eI~~~Lk~g-aiL~~a 211 (462)
++..-...-.....+.|+ +++.-+
T Consensus 312 dD~~Nl~ivL~ar~l~p~~kIIa~v 336 (393)
T PRK10537 312 NDADNAFVVLAAKEMSSDVKTVAAV 336 (393)
T ss_pred ChHHHHHHHHHHHHhCCCCcEEEEE
Confidence 876544332222333343 344433
No 390
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=90.54 E-value=0.66 Score=48.82 Aligned_cols=88 Identities=18% Similarity=0.152 Sum_probs=55.0
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCC-------------------chhHHHHH---Hc-
Q 012479 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKG-------------------SRSFAEAR---AA- 160 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~-------------------~~s~~~A~---~~- 160 (462)
...|++ .+|.|||+|-.|..++.+|... |+ ++.+.++.. .+....++ +.
T Consensus 36 q~~l~~-~~VliiG~GglG~~v~~~La~~------Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~n 108 (370)
T PRK05600 36 QERLHN-ARVLVIGAGGLGCPAMQSLASA------GVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQ 108 (370)
T ss_pred HHHhcC-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHC
Confidence 477888 9999999999999999999988 76 444443320 01111111 11
Q ss_pred -Cce--ecCCCc--CCHhhhhccCCeEEEeecchhHHHHHHHHH
Q 012479 161 -GFT--EENGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (462)
Q Consensus 161 -G~~--~~d~~~--~~~~eav~~ADvViLavpd~a~~~vl~eI~ 199 (462)
.+. ...... .+..+.++++|+||-|+-......++.++.
T Consensus 109 p~v~i~~~~~~i~~~~~~~~~~~~DlVid~~Dn~~~r~~in~~~ 152 (370)
T PRK05600 109 PDIRVNALRERLTAENAVELLNGVDLVLDGSDSFATKFLVADAA 152 (370)
T ss_pred CCCeeEEeeeecCHHHHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 111 101111 134567899999999988777766777654
No 391
>PRK02102 ornithine carbamoyltransferase; Validated
Probab=90.49 E-value=0.83 Score=47.53 Aligned_cols=70 Identities=17% Similarity=0.197 Sum_probs=48.8
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHHhhhhhcCCcEEEEEecCC----chhHH----HHHHcCceecCCCcCCHhhhh
Q 012479 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETI 176 (462)
Q Consensus 107 ~l~gikkIgIIG~G--~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~----~~s~~----~A~~~G~~~~d~~~~~~~eav 176 (462)
.++| .||++||-+ +...|++..+..- |.+|.+...+. +...+ .++..|.... ...++++++
T Consensus 152 ~l~g-~~va~vGd~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~ea~ 222 (331)
T PRK02102 152 PLKG-LKLAYVGDGRNNMANSLMVGGAKL------GMDVRICAPKELWPEEELVALAREIAKETGAKIT--ITEDPEEAV 222 (331)
T ss_pred CCCC-CEEEEECCCcccHHHHHHHHHHHc------CCEEEEECCcccccCHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 4788 999999997 7888988888877 88876654332 12222 2344564310 146889999
Q ss_pred ccCCeEEEe
Q 012479 177 SGSDLVLLL 185 (462)
Q Consensus 177 ~~ADvViLa 185 (462)
++||+|..-
T Consensus 223 ~~aDvvyt~ 231 (331)
T PRK02102 223 KGADVIYTD 231 (331)
T ss_pred CCCCEEEEc
Confidence 999999984
No 392
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=90.24 E-value=1.3 Score=43.67 Aligned_cols=90 Identities=18% Similarity=0.135 Sum_probs=56.9
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc----CceecCCCcCCHhhhhccCCeEEE
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~----G~~~~d~~~~~~~eav~~ADvViL 184 (462)
+| ++|.-||+|+ | .++..+... |...+++.+.++...+.|++. ++.. ..+..+.-...|+|+.
T Consensus 119 ~~-~~VLDiGcGs-G-~l~i~~~~~------g~~~v~giDis~~~l~~A~~n~~~~~~~~----~~~~~~~~~~fD~Vva 185 (250)
T PRK00517 119 PG-KTVLDVGCGS-G-ILAIAAAKL------GAKKVLAVDIDPQAVEAARENAELNGVEL----NVYLPQGDLKADVIVA 185 (250)
T ss_pred CC-CEEEEeCCcH-H-HHHHHHHHc------CCCeEEEEECCHHHHHHHHHHHHHcCCCc----eEEEccCCCCcCEEEE
Confidence 56 8999999999 5 344455555 554356777777666665543 3310 0000000004799887
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
-+....+..+++++...|+||..++++
T Consensus 186 ni~~~~~~~l~~~~~~~LkpgG~lils 212 (250)
T PRK00517 186 NILANPLLELAPDLARLLKPGGRLILS 212 (250)
T ss_pred cCcHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 665556677888899999999877665
No 393
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=90.15 E-value=0.74 Score=48.20 Aligned_cols=89 Identities=12% Similarity=0.164 Sum_probs=55.1
Q ss_pred CEEEEEcc-cchHHHHHHHHHH-hhhhhcCCcE---EEEEe--cCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 112 NQIGVIGW-GSQGPAQAQNLRD-SLAEAKSDIV---VKVGL--RKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 112 kkIgIIG~-G~mG~AiA~~Lrd-s~~~~g~G~~---Vivg~--r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
.+|||||. |..|.-+.+-|.+ . .+. +.... +...+......+ ..... ..+. +..++.|+||+
T Consensus 6 ~~VaIvGATG~vG~ell~lL~~h~------~f~v~~l~~~aS~~saGk~~~~~~~-~l~v~---~~~~-~~~~~~Divf~ 74 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKET------KFNIAEVTLLSSKRSAGKTVQFKGR-EIIIQ---EAKI-NSFEGVDIAFF 74 (347)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHCC------CCCcccEEEEECcccCCCCeeeCCc-ceEEE---eCCH-HHhcCCCEEEE
Confidence 68999996 9999999998884 4 443 32222 222222211111 11110 1233 34578999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
++|.....++..+.. +.|..|+|.++.
T Consensus 75 a~~~~~s~~~~~~~~---~~G~~VID~Ss~ 101 (347)
T PRK06728 75 SAGGEVSRQFVNQAV---SSGAIVIDNTSE 101 (347)
T ss_pred CCChHHHHHHHHHHH---HCCCEEEECchh
Confidence 999987777777653 468888888764
No 394
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=90.14 E-value=1 Score=50.54 Aligned_cols=34 Identities=29% Similarity=0.400 Sum_probs=30.4
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecC
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~ 149 (462)
.| ++|+|||.|..|.+.|..|+.. |++|++..+.
T Consensus 326 ~~-~~VaIIGaGpAGLsaA~~L~~~------G~~V~V~E~~ 359 (654)
T PRK12769 326 SD-KRVAIIGAGPAGLACADVLARN------GVAVTVYDRH 359 (654)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHC------CCeEEEEecC
Confidence 57 9999999999999999999998 9988887653
No 395
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.10 E-value=0.87 Score=46.75 Aligned_cols=76 Identities=12% Similarity=0.135 Sum_probs=55.0
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCC----cEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCC
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSD----IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSD 180 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G----~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~AD 180 (462)
..++| |+|.|||-+ ..|..++.-|.+. | -.|.+...+ +.+.++.+++||
T Consensus 157 i~l~G-k~vvViGrS~iVGkPla~lL~~~------~~~~~atVtv~hs~-------------------T~~l~~~~~~AD 210 (297)
T PRK14168 157 VETSG-AEVVVVGRSNIVGKPIANMMTQK------GPGANATVTIVHTR-------------------SKNLARHCQRAD 210 (297)
T ss_pred CCCCC-CEEEEECCCCcccHHHHHHHHhc------ccCCCCEEEEecCC-------------------CcCHHHHHhhCC
Confidence 46899 999999965 7899999998765 3 345553221 236778899999
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 181 LVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 181 vViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
+||.++.-.. ++. ...+|+|++|++++
T Consensus 211 IvVsAvGkp~---~i~--~~~ik~gavVIDvG 237 (297)
T PRK14168 211 ILIVAAGVPN---LVK--PEWIKPGATVIDVG 237 (297)
T ss_pred EEEEecCCcC---ccC--HHHcCCCCEEEecC
Confidence 9999986433 222 34578999988864
No 396
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.10 E-value=1 Score=47.88 Aligned_cols=69 Identities=22% Similarity=0.175 Sum_probs=46.1
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCch-hHHHHHH--cCceecCCCcCC-HhhhhccCCeEE
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARA--AGFTEENGTLGD-IYETISGSDLVL 183 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~-s~~~A~~--~G~~~~d~~~~~-~~eav~~ADvVi 183 (462)
+++ ++|.|+|.|..|.+.|+-|++. |..|.+.+..... ..+..++ .|+... ... ..+...++|+||
T Consensus 3 ~~~-~~~~v~G~g~~G~~~a~~l~~~------g~~v~~~d~~~~~~~~~~l~~~~~gi~~~---~g~~~~~~~~~~d~vv 72 (445)
T PRK04308 3 FQN-KKILVAGLGGTGISMIAYLRKN------GAEVAAYDAELKPERVAQIGKMFDGLVFY---TGRLKDALDNGFDILA 72 (445)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEeCCCCchhHHHHhhccCCcEEE---eCCCCHHHHhCCCEEE
Confidence 467 9999999999999999999999 9988776554322 2222222 366431 111 233456899999
Q ss_pred Eee
Q 012479 184 LLI 186 (462)
Q Consensus 184 Lav 186 (462)
...
T Consensus 73 ~sp 75 (445)
T PRK04308 73 LSP 75 (445)
T ss_pred ECC
Confidence 854
No 397
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=90.06 E-value=1.8 Score=45.21 Aligned_cols=71 Identities=14% Similarity=0.057 Sum_probs=48.6
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCC----chhHHHH----HHcCceecCCCcCCHhhhhc
Q 012479 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEA----RAAGFTEENGTLGDIYETIS 177 (462)
Q Consensus 107 ~l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~----~~s~~~A----~~~G~~~~d~~~~~~~eav~ 177 (462)
.++| .||++||- .++..|++..+..- |.+|.+...+. ....+.+ +..|.... ...+++|+++
T Consensus 151 ~l~g-lkv~~vGD~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~eav~ 221 (338)
T PRK02255 151 KLED-CKVVFVGDATQVCVSLMFIATKM------GMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVL--VTDDVDEAVK 221 (338)
T ss_pred CCCC-CEEEEECCCchHHHHHHHHHHhC------CCEEEEECCCccccCHHHHHHHHHHHHhcCCeEE--EEcCHHHHhC
Confidence 4788 99999997 57888888888776 88877764432 1222333 33453210 1568899999
Q ss_pred cCCeEEEee
Q 012479 178 GSDLVLLLI 186 (462)
Q Consensus 178 ~ADvViLav 186 (462)
+||+|..-+
T Consensus 222 ~aDvvy~~~ 230 (338)
T PRK02255 222 DADFVYTDV 230 (338)
T ss_pred CCCEEEEcc
Confidence 999999843
No 398
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=90.01 E-value=1.3 Score=46.77 Aligned_cols=88 Identities=19% Similarity=0.242 Sum_probs=61.4
Q ss_pred ccCCCCEEEEEcc----------cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhh
Q 012479 107 AFNGINQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETI 176 (462)
Q Consensus 107 ~l~gikkIgIIG~----------G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav 176 (462)
.++| ++|+|+|+ -+-...++..|.+. |.+|.+.+..-.. ... +..+. +.+..+++
T Consensus 310 ~~~~-~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~------g~~v~~~DP~~~~-~~~-~~~~~------~~~~~~~~ 374 (411)
T TIGR03026 310 PLKG-KTVLILGLAFKPNTDDVRESPALDIIELLKEK------GAKVKAYDPLVPE-EEV-KGLPL------IDDLEEAL 374 (411)
T ss_pred cccC-CEEEEEeeEecCCCCccccChHHHHHHHHHhC------CCEEEEECCCCCh-hhh-hhccc------CCCHHHHH
Confidence 3688 99999998 55777888888888 9888776654222 111 11221 35778999
Q ss_pred ccCCeEEEeecchhHHH-HHHHHHhcCCCCcEEEE
Q 012479 177 SGSDLVLLLISDAAQAD-NYEKIFSCMKPNSILGL 210 (462)
Q Consensus 177 ~~ADvViLavpd~a~~~-vl~eI~~~Lk~gaiL~~ 210 (462)
++||+|++++.-....+ -++.+...+++ .+|.|
T Consensus 375 ~~ad~~v~~t~~~~~~~~~~~~~~~~~~~-~~v~D 408 (411)
T TIGR03026 375 KGADALVILTDHDEFKDLDLEKIKDLMKG-KVVVD 408 (411)
T ss_pred hCCCEEEEecCCHHHhccCHHHHHHhcCC-CEEEe
Confidence 99999999999877765 35567766654 35555
No 399
>PLN02342 ornithine carbamoyltransferase
Probab=89.97 E-value=1.2 Score=46.77 Aligned_cols=69 Identities=20% Similarity=0.216 Sum_probs=49.7
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecC----CchhHHHHHHcC---ceecCCCcCCHhhhhcc
Q 012479 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEARAAG---FTEENGTLGDIYETISG 178 (462)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~----~~~s~~~A~~~G---~~~~d~~~~~~~eav~~ 178 (462)
.++| .||++||-+ ++.+|++..+..- |.++.+.... .....+.+++.| +.. ..++++++++
T Consensus 191 ~l~g-lkva~vGD~~nva~Sli~~~~~~------G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~----~~d~~eav~~ 259 (348)
T PLN02342 191 RLEG-TKVVYVGDGNNIVHSWLLLAAVL------PFHFVCACPKGYEPDAKTVEKARAAGISKIEI----TNDPAEAVKG 259 (348)
T ss_pred CcCC-CEEEEECCCchhHHHHHHHHHHc------CCEEEEECCcccccCHHHHHHHHHhCCCcEEE----EcCHHHHhCC
Confidence 4788 999999974 6888888888776 8887765433 223344555555 332 5788999999
Q ss_pred CCeEEEee
Q 012479 179 SDLVLLLI 186 (462)
Q Consensus 179 ADvViLav 186 (462)
||+|....
T Consensus 260 aDVvy~~~ 267 (348)
T PLN02342 260 ADVVYTDV 267 (348)
T ss_pred CCEEEECC
Confidence 99999874
No 400
>PRK03515 ornithine carbamoyltransferase subunit I; Provisional
Probab=89.92 E-value=1.2 Score=46.54 Aligned_cols=70 Identities=20% Similarity=0.195 Sum_probs=49.2
Q ss_pred ccCCCCEEEEEccc--chHHHHHHHHHHhhhhhcCCcEEEEEecCC----chhH----HHHHHcCceecCCCcCCHhhhh
Q 012479 107 AFNGINQIGVIGWG--SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSF----AEARAAGFTEENGTLGDIYETI 176 (462)
Q Consensus 107 ~l~gikkIgIIG~G--~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~----~~s~----~~A~~~G~~~~d~~~~~~~eav 176 (462)
.++| .||++||-+ ++..|++..+..- |.++.+...+. .... +.+++.|.... ...++++++
T Consensus 153 ~l~g-~~ia~vGD~~~~v~~Sl~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~--~~~d~~ea~ 223 (336)
T PRK03515 153 AFNE-MTLAYAGDARNNMGNSLLEAAALT------GLDLRLVAPKACWPEAALVTECRALAQKNGGNIT--LTEDIAEGV 223 (336)
T ss_pred CcCC-CEEEEeCCCcCcHHHHHHHHHHHc------CCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEE--EEcCHHHHh
Confidence 4788 999999986 7899999988877 88877764432 1112 23444563221 157899999
Q ss_pred ccCCeEEEe
Q 012479 177 SGSDLVLLL 185 (462)
Q Consensus 177 ~~ADvViLa 185 (462)
++||+|..-
T Consensus 224 ~~aDvvytd 232 (336)
T PRK03515 224 KGADFIYTD 232 (336)
T ss_pred CCCCEEEec
Confidence 999999975
No 401
>KOG3007 consensus Mu-crystallin [Amino acid transport and metabolism]
Probab=89.80 E-value=0.64 Score=47.29 Aligned_cols=97 Identities=13% Similarity=0.060 Sum_probs=66.3
Q ss_pred EEEEEcccchHHHHHHHHHHhhhhhcC-CcEEEEEecCCchhHHHHHHcC-----ceecCCCcCCHhhhhccCCeEEEee
Q 012479 113 QIGVIGWGSQGPAQAQNLRDSLAEAKS-DIVVKVGLRKGSRSFAEARAAG-----FTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lrds~~~~g~-G~~Vivg~r~~~~s~~~A~~~G-----~~~~d~~~~~~~eav~~ADvViLav 186 (462)
-..|+|.|.|+..+...-.+. .+ =.+|.|+++....+.+.|+..- +..+-....+.+++++.+|+|+-++
T Consensus 140 vL~i~GsG~qA~~hi~ih~~~----~pslreVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~at 215 (333)
T KOG3007|consen 140 VLTIFGSGLQAFWHIYIHIKL----IPSLREVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGAT 215 (333)
T ss_pred EEEEEcccchhHHHHHHHHHh----cccceEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhcccccCceEEecc
Confidence 478999999999887665543 01 1278999999888788877321 1111112456889999999999998
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEeccchHH
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGLSHGFLLG 217 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~a~G~~i~ 217 (462)
+...-. ++ ...++||+.|..+++|+-+
T Consensus 216 lstePi-lf---gewlkpgthIdlVGsf~p~ 242 (333)
T KOG3007|consen 216 LSTEPI-LF---GEWLKPGTHIDLVGSFKPV 242 (333)
T ss_pred ccCCce-ee---eeeecCCceEeeeccCCch
Confidence 853111 11 2457899999999999753
No 402
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=89.73 E-value=2.7 Score=44.11 Aligned_cols=98 Identities=17% Similarity=0.166 Sum_probs=63.9
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCc-CCHhhhh------ccCC
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL-GDIYETI------SGSD 180 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~-~~~~eav------~~AD 180 (462)
..| .+|.|+|.|.+|...++-++.. |.++++..+.+.+..+.|++.|+...+... .+..+.+ ...|
T Consensus 184 ~~g-~~VlV~G~G~iG~~aiqlAk~~------Ga~~vi~~d~~~~r~~~a~~~Ga~~v~~~~~~~~~~~v~~~~~~~g~D 256 (393)
T TIGR02819 184 GPG-STVYIAGAGPVGLAAAASAQLL------GAAVVIVGDLNPARLAQARSFGCETVDLSKDATLPEQIEQILGEPEVD 256 (393)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCceEEEeCCCHHHHHHHHHcCCeEEecCCcccHHHHHHHHcCCCCCc
Confidence 346 8999999999999999988888 887655555555678889999874211111 1222222 2479
Q ss_pred eEEEeecchhH-----------HHHHHHHHhcCCCCcEEEEec
Q 012479 181 LVLLLISDAAQ-----------ADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 181 vViLavpd~a~-----------~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
+||-++-.... ...+++....+++|-.|+..+
T Consensus 257 vvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G 299 (393)
T TIGR02819 257 CAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPG 299 (393)
T ss_pred EEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEee
Confidence 99988875421 235565556777776655443
No 403
>PRK08223 hypothetical protein; Validated
Probab=89.52 E-value=1.6 Score=44.59 Aligned_cols=28 Identities=14% Similarity=0.318 Sum_probs=26.0
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHHh
Q 012479 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~AiA~~Lrds 133 (462)
...|+. .+|.|||+|-.|..++.+|..+
T Consensus 22 Q~kL~~-s~VlIvG~GGLGs~va~~LA~a 49 (287)
T PRK08223 22 QQRLRN-SRVAIAGLGGVGGIHLLTLARL 49 (287)
T ss_pred HHHHhc-CCEEEECCCHHHHHHHHHHHHh
Confidence 477888 9999999999999999999998
No 404
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=89.51 E-value=1.3 Score=47.19 Aligned_cols=71 Identities=17% Similarity=0.182 Sum_probs=48.9
Q ss_pred ccCCCCEEEEEcc-----c---chHHHHHHHHHHhhhhhcCCcEEEEEecCC----chhHHH----HHHcCceecCCCcC
Q 012479 107 AFNGINQIGVIGW-----G---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLG 170 (462)
Q Consensus 107 ~l~gikkIgIIG~-----G---~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~----~~s~~~----A~~~G~~~~d~~~~ 170 (462)
.++| +||+|+|- | ++..|++..+..- |.+|.+...+. +...+. +++.|.... ...
T Consensus 184 ~l~g-~kVaivg~~~~~~g~~~~Va~Sl~~~~~~l------G~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~--~~~ 254 (395)
T PRK07200 184 NLKG-KKIAMTWAYSPSYGKPLSVPQGIIGLMTRF------GMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFR--QVN 254 (395)
T ss_pred ccCC-CEEEEEeccccccCCcchHHHHHHHHHHHc------CCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEE--EEc
Confidence 4778 89999985 4 6678888888776 88877765442 222233 444563210 147
Q ss_pred CHhhhhccCCeEEEee
Q 012479 171 DIYETISGSDLVLLLI 186 (462)
Q Consensus 171 ~~~eav~~ADvViLav 186 (462)
+++|++++||+|...+
T Consensus 255 d~~eav~~aDvVYtd~ 270 (395)
T PRK07200 255 SMEEAFKDADIVYPKS 270 (395)
T ss_pred CHHHHhCCCCEEEEcC
Confidence 8999999999999874
No 405
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=89.51 E-value=0.95 Score=52.08 Aligned_cols=65 Identities=22% Similarity=0.175 Sum_probs=46.4
Q ss_pred CEEEEEcccchHHHH-HHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 112 NQIGVIGWGSQGPAQ-AQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 112 kkIgIIG~G~mG~Ai-A~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
++|.|||+|-.|.+- |+-|++. |.+|.+.+.......+..++.|+... .....+.+.++|+||+.
T Consensus 5 ~~i~viG~G~sG~salA~~L~~~------G~~V~~sD~~~~~~~~~L~~~gi~~~---~g~~~~~~~~~d~vV~S 70 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHILLDR------GYSVSGSDLSEGKTVEKLKAKGARFF---LGHQEEHVPEDAVVVYS 70 (809)
T ss_pred ceEEEEEecHHhHHHHHHHHHHC------CCeEEEECCCCChHHHHHHHCCCEEe---CCCCHHHcCCCCEEEEC
Confidence 679999999999997 9999999 99987766543333344455687642 12233567789998864
No 406
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=89.49 E-value=1.2 Score=46.16 Aligned_cols=95 Identities=19% Similarity=0.132 Sum_probs=53.5
Q ss_pred EEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecC-CchhHHHHHHcCce---------ec------CCC---cC---
Q 012479 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFT---------EE------NGT---LG--- 170 (462)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~-~~~s~~~A~~~G~~---------~~------d~~---~~--- 170 (462)
||||+|+|.+|+.+.+.|.++. .+.+++|+.-++. +.+......+++-+ .+ ++. +.
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~--~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~~v~~~~~~l~v~g~~i~v~~~~ 78 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESG--ERLGIEVVALNELADQASMAHLLRYDTSHGRFPGEVKVDGDCLHVNGDCIRVLHSP 78 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcC--CCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCCcEEEeCCEEEECCeEEEEEEcC
Confidence 6999999999999999988650 0013565443332 23333333333210 00 000 11
Q ss_pred CHhhh---hccCCeEEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 171 DIYET---ISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 171 ~~~ea---v~~ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++++. -.++|+|+.|++.....+.... +++.|+.+++.+
T Consensus 79 ~p~~~~w~~~gvDiVie~tG~~~s~e~a~~---~l~aGa~~V~~S 120 (325)
T TIGR01532 79 TPEALPWRALGVDLVLDCTGVYGNREQGER---HIRAGAKRVLFS 120 (325)
T ss_pred ChhhccccccCCCEEEEccchhccHHHHHH---HHHcCCeEEEec
Confidence 23222 1478999999998877665543 455676655444
No 407
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=89.19 E-value=1.1 Score=43.28 Aligned_cols=39 Identities=23% Similarity=0.337 Sum_probs=32.2
Q ss_pred cccCCCCEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCc
Q 012479 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (462)
Q Consensus 106 ~~l~gikkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~ 151 (462)
+-.++ |+|.|+| .|.+|..+++.|.+. |++|++..|..+
T Consensus 13 ~~~~~-~~ilItGasG~iG~~l~~~L~~~------g~~V~~~~R~~~ 52 (251)
T PLN00141 13 ENVKT-KTVFVAGATGRTGKRIVEQLLAK------GFAVKAGVRDVD 52 (251)
T ss_pred ccccC-CeEEEECCCcHHHHHHHHHHHhC------CCEEEEEecCHH
Confidence 45566 9999999 599999999999998 998877666543
No 408
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=89.11 E-value=2 Score=43.47 Aligned_cols=117 Identities=15% Similarity=0.247 Sum_probs=69.8
Q ss_pred CCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCch-hH-H---HH---HHcCceecCCCcCCHhhhhccCCe
Q 012479 111 INQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SF-A---EA---RAAGFTEENGTLGDIYETISGSDL 181 (462)
Q Consensus 111 ikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~-s~-~---~A---~~~G~~~~d~~~~~~~eav~~ADv 181 (462)
++||+|+|+ |.||..+.+.+... .++++..+..+.+. +. . .+ ...|+.. ..+...+..++|+
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~-----~~~~L~aa~~~~~~~~~g~d~ge~~g~~~~gv~v----~~~~~~~~~~~DV 72 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEA-----PDLELVAAFDRPGSLSLGSDAGELAGLGLLGVPV----TDDLLLVKADADV 72 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcC-----CCceEEEEEecCCccccccchhhhccccccCcee----ecchhhcccCCCE
Confidence 479999998 99999999999876 14565555544322 11 1 11 1123332 2345667889999
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEEEeccchHHHhhhccccCCCCccEEecccCCC
Q 012479 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGM 240 (462)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~G~~i~~~~~~~i~~p~~v~VV~v~Pngp 240 (462)
+|=-+-|+...+.++....+ +-.+|+=..||+-..++. ...+.+.+.+| .+||..
T Consensus 73 ~IDFT~P~~~~~~l~~~~~~--~~~lVIGTTGf~~e~~~~-l~~~a~~v~vv-~a~NfS 127 (266)
T COG0289 73 LIDFTTPEATLENLEFALEH--GKPLVIGTTGFTEEQLEK-LREAAEKVPVV-IAPNFS 127 (266)
T ss_pred EEECCCchhhHHHHHHHHHc--CCCeEEECCCCCHHHHHH-HHHHHhhCCEE-Eeccch
Confidence 99999998888887754432 122566677886433221 11122334444 567754
No 409
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=89.00 E-value=1.8 Score=48.61 Aligned_cols=78 Identities=18% Similarity=0.125 Sum_probs=51.1
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EE--EEEecCCc------hhHHHHHHc--Cc--eecC-CCcCCHhh
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VV--KVGLRKGS------RSFAEARAA--GF--TEEN-GTLGDIYE 174 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~V--ivg~r~~~------~s~~~A~~~--G~--~~~d-~~~~~~~e 174 (462)
+. .||+|||.|.+|.++..+|..+ |+ ++ ++.+...+ +..+.|++. ++ ...+ ....+..+
T Consensus 128 R~-akVlVlG~Gg~~s~lv~sL~~s------G~~~I~~vd~D~v~SNlnRIgEl~e~A~~~n~~v~v~~i~~~~~~dl~e 200 (637)
T TIGR03693 128 RN-AKILAAGSGDFLTKLVRSLIDS------GFPRFHAIVTDAEEHALDRIHELAEIAEETDDALLVQEIDFAEDQHLHE 200 (637)
T ss_pred hc-ccEEEEecCchHHHHHHHHHhc------CCCcEEEEeccccchhhhHHHHHHHHHHHhCCCCceEeccCCcchhHHH
Confidence 55 8999999999999999999999 87 22 22232211 334556652 21 1101 11345778
Q ss_pred hhccCCeEEEeecchhHHH
Q 012479 175 TISGSDLVLLLISDAAQAD 193 (462)
Q Consensus 175 av~~ADvViLavpd~a~~~ 193 (462)
+++..|+|+.++-+....+
T Consensus 201 v~~~~DiVi~vsDdy~~~~ 219 (637)
T TIGR03693 201 AFEPADWVLYVSDNGDIDD 219 (637)
T ss_pred hhcCCcEEEEECCCCChHH
Confidence 9999999999988655543
No 410
>PRK06392 homoserine dehydrogenase; Provisional
Probab=88.94 E-value=0.95 Score=46.90 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=19.9
Q ss_pred CEEEEEcccchHHHHHHHHHHh
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDS 133 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds 133 (462)
++|+|||+|++|..+++.|++.
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~ 22 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSR 22 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhC
Confidence 4899999999999999999873
No 411
>PLN03075 nicotianamine synthase; Provisional
Probab=88.92 E-value=2.6 Score=43.25 Aligned_cols=98 Identities=16% Similarity=0.215 Sum_probs=61.1
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc-----CceecCCC---cCCHhhh---hc
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA-----GFTEENGT---LGDIYET---IS 177 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~-----G~~~~d~~---~~~~~ea---v~ 177 (462)
.. ++|+.||+|..|.+-..-++...+ + -.+++.+.++...+.|++. |+. +.. ..|..+. ..
T Consensus 123 ~p-~~VldIGcGpgpltaiilaa~~~p----~-~~~~giD~d~~ai~~Ar~~~~~~~gL~--~rV~F~~~Da~~~~~~l~ 194 (296)
T PLN03075 123 VP-TKVAFVGSGPLPLTSIVLAKHHLP----T-TSFHNFDIDPSANDVARRLVSSDPDLS--KRMFFHTADVMDVTESLK 194 (296)
T ss_pred CC-CEEEEECCCCcHHHHHHHHHhcCC----C-CEEEEEeCCHHHHHHHHHHhhhccCcc--CCcEEEECchhhcccccC
Confidence 44 899999999987754433333211 1 1356888877666666652 221 000 1222222 35
Q ss_pred cCCeEEEeec----chhHHHHHHHHHhcCCCCcEEEE--eccc
Q 012479 178 GSDLVLLLIS----DAAQADNYEKIFSCMKPNSILGL--SHGF 214 (462)
Q Consensus 178 ~ADvViLavp----d~a~~~vl~eI~~~Lk~gaiL~~--a~G~ 214 (462)
+-|+|++.+= .....++++.+..+|+||.++.. +||.
T Consensus 195 ~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~~G~ 237 (296)
T PLN03075 195 EYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSAHGA 237 (296)
T ss_pred CcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEecccch
Confidence 7899999952 24557899999999999998654 4554
No 412
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=88.90 E-value=1.4 Score=46.62 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=25.6
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHHh
Q 012479 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDS 133 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~AiA~~Lrds 133 (462)
...|+. .+|.|||+|-.|..+|.+|..+
T Consensus 37 q~~L~~-~~VlviG~GGlGs~va~~La~~ 64 (392)
T PRK07878 37 QKRLKN-ARVLVIGAGGLGSPTLLYLAAA 64 (392)
T ss_pred HHHHhc-CCEEEECCCHHHHHHHHHHHHc
Confidence 467788 9999999999999999999988
No 413
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=88.85 E-value=0.96 Score=47.71 Aligned_cols=65 Identities=26% Similarity=0.287 Sum_probs=43.8
Q ss_pred EEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHH----HHH-HcCceecCCCcCCHhhhhccCCeEEEee
Q 012479 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFA----EAR-AAGFTEENGTLGDIYETISGSDLVLLLI 186 (462)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~----~A~-~~G~~~~d~~~~~~~eav~~ADvViLav 186 (462)
||.|||+|-.|.++|+-|++. |.+|.+.+........ ..+ ..|+... .....+.++++|+||..-
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~------G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~---~g~~~~~~~~~d~vv~sp 70 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKK------GAEVTVTDLKPNEELEPSMGQLRLNEGSVLH---TGLHLEDLNNADLVVKSP 70 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHC------CCEEEEEeCCCCccchhHHHHHhhccCcEEE---ecCchHHhccCCEEEECC
Confidence 589999999999999999999 9998776654332111 122 2476531 112245678899887753
No 414
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=88.65 E-value=0.76 Score=47.70 Aligned_cols=87 Identities=15% Similarity=0.205 Sum_probs=54.4
Q ss_pred EEEEEc-ccchHHHHHHHHHHhhhhhcCCcE---EEEEecC--CchhHHHHHHcCceecCCCcCCH-hhhhccCCeEEEe
Q 012479 113 QIGVIG-WGSQGPAQAQNLRDSLAEAKSDIV---VKVGLRK--GSRSFAEARAAGFTEENGTLGDI-YETISGSDLVLLL 185 (462)
Q Consensus 113 kIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~---Vivg~r~--~~~s~~~A~~~G~~~~d~~~~~~-~eav~~ADvViLa 185 (462)
||+||| .|..|..+.+-|.++ ++. +.+..+. ..+... ..|... .+.+. .+.++++|+||++
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~------~hp~~~l~~~as~~~~g~~~~---~~~~~~---~~~~~~~~~~~~~D~v~~a 68 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEER------NFPIDKLVLLASDRSAGRKVT---FKGKEL---EVNEAKIESFEGIDIALFS 68 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhC------CCChhhEEEEeccccCCCeee---eCCeeE---EEEeCChHHhcCCCEEEEC
Confidence 689999 899999999988876 553 2222222 122221 112111 01111 2445899999999
Q ss_pred ecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 186 ISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 186 vpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
+|.....++.+++. +.|..|++.++.
T Consensus 69 ~g~~~s~~~a~~~~---~~G~~VID~ss~ 94 (339)
T TIGR01296 69 AGGSVSKEFAPKAA---KCGAIVIDNTSA 94 (339)
T ss_pred CCHHHHHHHHHHHH---HCCCEEEECCHH
Confidence 99998888776653 457777777764
No 415
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=88.51 E-value=0.99 Score=46.54 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=20.0
Q ss_pred EEEEEcccchHHHHHHHHHHh
Q 012479 113 QIGVIGWGSQGPAQAQNLRDS 133 (462)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lrds 133 (462)
||.|||+|-.|..+|++|..+
T Consensus 1 kVLIvGaGGLGs~vA~~La~a 21 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGW 21 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHc
Confidence 689999999999999999988
No 416
>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=88.47 E-value=2 Score=44.22 Aligned_cols=65 Identities=17% Similarity=0.215 Sum_probs=46.2
Q ss_pred ccCCCCEEEEEcc---cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEE
Q 012479 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (462)
Q Consensus 107 ~l~gikkIgIIG~---G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvVi 183 (462)
.++| .||++||- +++..|++..+..- |+++.+...++-.... . ..+.. ..+++|++++||+|.
T Consensus 153 ~l~g-~kv~~vGD~~~~~v~~Sl~~~~~~~------g~~~~~~~P~~~~~~~--~-~~~~~----~~d~~ea~~~aDvvy 218 (305)
T PRK00856 153 RLEG-LKVAIVGDIKHSRVARSNIQALTRL------GAEVRLIAPPTLLPEG--M-PEYGV----HTDLDEVIEDADVVM 218 (305)
T ss_pred CCCC-CEEEEECCCCCCcHHHHHHHHHHHc------CCEEEEECCcccCccc--c-cceEE----ECCHHHHhCCCCEEE
Confidence 4788 99999997 58999999999887 8887776543211000 0 01232 578999999999887
Q ss_pred Ee
Q 012479 184 LL 185 (462)
Q Consensus 184 La 185 (462)
..
T Consensus 219 t~ 220 (305)
T PRK00856 219 ML 220 (305)
T ss_pred EC
Confidence 63
No 417
>PRK07411 hypothetical protein; Validated
Probab=88.32 E-value=1.3 Score=46.99 Aligned_cols=88 Identities=10% Similarity=0.029 Sum_probs=54.0
Q ss_pred ccccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecC--C-----------------chhHHHHHH---c-
Q 012479 105 PDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRK--G-----------------SRSFAEARA---A- 160 (462)
Q Consensus 105 ~~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~--~-----------------~~s~~~A~~---~- 160 (462)
...|+. .+|.|||+|-.|..++++|..+ |+ ++++.+.. . .+....++. .
T Consensus 33 q~~L~~-~~VlivG~GGlG~~va~~La~~------Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~n 105 (390)
T PRK07411 33 QKRLKA-ASVLCIGTGGLGSPLLLYLAAA------GIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEIN 105 (390)
T ss_pred HHHHhc-CcEEEECCCHHHHHHHHHHHHc------CCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHC
Confidence 467888 9999999999999999999988 76 33333221 0 011111111 1
Q ss_pred -Ccee--cCCCc--CCHhhhhccCCeEEEeecchhHHHHHHHHH
Q 012479 161 -GFTE--ENGTL--GDIYETISGSDLVLLLISDAAQADNYEKIF 199 (462)
Q Consensus 161 -G~~~--~d~~~--~~~~eav~~ADvViLavpd~a~~~vl~eI~ 199 (462)
.+.. ..... .+..+.++++|+||.|+=+.....++.++.
T Consensus 106 p~v~v~~~~~~~~~~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~ 149 (390)
T PRK07411 106 PYCQVDLYETRLSSENALDILAPYDVVVDGTDNFPTRYLVNDAC 149 (390)
T ss_pred CCCeEEEEecccCHHhHHHHHhCCCEEEECCCCHHHHHHHHHHH
Confidence 1110 01111 123467899999999988777766776643
No 418
>PLN02477 glutamate dehydrogenase
Probab=88.23 E-value=0.94 Score=48.46 Aligned_cols=32 Identities=19% Similarity=0.330 Sum_probs=29.3
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEE
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK 144 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vi 144 (462)
..++| ++|+|.|+|+.|...|+-|.+. |.+|+
T Consensus 202 ~~l~g-~~VaIqGfGnVG~~~A~~L~e~------GakVV 233 (410)
T PLN02477 202 KSIAG-QTFVIQGFGNVGSWAAQLIHEK------GGKIV 233 (410)
T ss_pred CCccC-CEEEEECCCHHHHHHHHHHHHc------CCEEE
Confidence 47899 9999999999999999999988 88876
No 419
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=88.19 E-value=1.6 Score=44.87 Aligned_cols=70 Identities=19% Similarity=0.222 Sum_probs=50.1
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCC----chhHHH-HHHcCceecCCCcCCHhhhhccCC
Q 012479 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE-ARAAGFTEENGTLGDIYETISGSD 180 (462)
Q Consensus 107 ~l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~----~~s~~~-A~~~G~~~~d~~~~~~~eav~~AD 180 (462)
.++| .||++||- ++..+|++..+..- |.+|.+..... ....+. +++.|.... ...+.++++++||
T Consensus 149 ~l~g-l~i~~vGd~~~v~~Sl~~~l~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~~~aD 219 (304)
T PRK00779 149 SLKG-LKVAWVGDGNNVANSLLLAAALL------GFDLRVATPKGYEPDPEIVEKIAKETGASIE--VTHDPKEAVKGAD 219 (304)
T ss_pred CcCC-cEEEEEeCCCccHHHHHHHHHHc------CCEEEEECCcccCCCHHHHHHHHHHcCCeEE--EEcCHHHHhCCCC
Confidence 4788 89999997 78999999998877 88877765432 111222 556674320 1468899999999
Q ss_pred eEEEe
Q 012479 181 LVLLL 185 (462)
Q Consensus 181 vViLa 185 (462)
+|...
T Consensus 220 vvy~~ 224 (304)
T PRK00779 220 VVYTD 224 (304)
T ss_pred EEEec
Confidence 99985
No 420
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=88.19 E-value=3.4 Score=42.99 Aligned_cols=90 Identities=20% Similarity=0.226 Sum_probs=56.7
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-CCCcCC---HhhhhccCCeEEE
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGD---IYETISGSDLVLL 184 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~---~~eav~~ADvViL 184 (462)
.| .+|.|.|.|.+|...++-++.. |.+|++..+.+++..+.+++.|.... + ..+ ..+.....|+|+-
T Consensus 178 ~g-~~VlV~G~G~vG~~avq~Ak~~------Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~--~~~~~~v~~~~~~~D~vid 248 (375)
T PLN02178 178 SG-KRLGVNGLGGLGHIAVKIGKAF------GLRVTVISRSSEKEREAIDRLGADSFLV--TTDSQKMKEAVGTMDFIID 248 (375)
T ss_pred CC-CEEEEEcccHHHHHHHHHHHHc------CCeEEEEeCChHHhHHHHHhCCCcEEEc--CcCHHHHHHhhCCCcEEEE
Confidence 47 8999999999999999999888 88876665554454677777886320 0 011 1222335788888
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEE
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGL 210 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~ 210 (462)
++.... .+.+....++++-.++.
T Consensus 249 ~~G~~~---~~~~~~~~l~~~G~iv~ 271 (375)
T PLN02178 249 TVSAEH---ALLPLFSLLKVSGKLVA 271 (375)
T ss_pred CCCcHH---HHHHHHHhhcCCCEEEE
Confidence 876432 23333444556555443
No 421
>COG4569 MhpF Acetaldehyde dehydrogenase (acetylating) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=88.16 E-value=1 Score=44.16 Aligned_cols=78 Identities=22% Similarity=0.301 Sum_probs=55.5
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCc----EEEEEecCCchhHHHHHHcCceecCCCcCCHhhh-----hccCCeE
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDI----VVKVGLRKGSRSFAEARAAGFTEENGTLGDIYET-----ISGSDLV 182 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~----~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~ea-----v~~ADvV 182 (462)
.|++|||.||+|.-+.-.+.++ |- .+.+|.+..+.-+..|.+.|+.... ...+-+ .++-|+|
T Consensus 5 ~kvaiigsgni~tdlm~k~lr~------g~~le~~~mvgidp~sdglaraarlgv~tt~---egv~~ll~~p~~~di~lv 75 (310)
T COG4569 5 RKVAIIGSGNIGTDLMIKILRH------GQHLEMAVMVGIDPQSDGLARAARLGVATTH---EGVIGLLNMPEFADIDLV 75 (310)
T ss_pred ceEEEEccCcccHHHHHHHHhc------CCcccceeEEccCCCccHHHHHHhcCCcchh---hHHHHHHhCCCCCCcceE
Confidence 5899999999999887777666 32 5788999888888888888886311 111111 2455699
Q ss_pred EEeecchhHHHHHHHH
Q 012479 183 LLLISDAAQADNYEKI 198 (462)
Q Consensus 183 iLavpd~a~~~vl~eI 198 (462)
|=+++..++.+-...+
T Consensus 76 fdatsa~~h~~~a~~~ 91 (310)
T COG4569 76 FDATSAGAHVKNAAAL 91 (310)
T ss_pred EeccccchhhcchHhH
Confidence 9999988886644433
No 422
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.05 E-value=1.5 Score=45.10 Aligned_cols=80 Identities=16% Similarity=0.110 Sum_probs=54.2
Q ss_pred cccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
..++| |++.|||-+ ..|..+|.-|.+... ..+..|.+... + +.++++.+++||+||.
T Consensus 153 i~l~G-k~vvViGrS~iVGkPla~lL~~~~~--~~~aTVtvchs---~----------------T~~l~~~~~~ADIvIs 210 (297)
T PRK14167 153 VDTEG-ADVVVVGRSDIVGKPMANLLIQKAD--GGNATVTVCHS---R----------------TDDLAAKTRRADIVVA 210 (297)
T ss_pred CCCCC-CEEEEECCCcccHHHHHHHHhcCcc--CCCCEEEEeCC---C----------------CCCHHHHHhhCCEEEE
Confidence 36899 999999966 789999998875400 00235555322 1 2356788999999999
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
|+--.. ++. ..++|+|++|++++
T Consensus 211 AvGkp~---~i~--~~~ik~gaiVIDvG 233 (297)
T PRK14167 211 AAGVPE---LID--GSMLSEGATVIDVG 233 (297)
T ss_pred ccCCcC---ccC--HHHcCCCCEEEEcc
Confidence 886332 222 24578999988864
No 423
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=87.98 E-value=1.8 Score=45.07 Aligned_cols=71 Identities=14% Similarity=0.188 Sum_probs=49.1
Q ss_pred ccCCCCEEEEEcc---cchHHHHHHHHHHhhhhhcCCcEEEEEecC----CchhHHHHHHcCceecCCCcCCHhhhhccC
Q 012479 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEARAAGFTEENGTLGDIYETISGS 179 (462)
Q Consensus 107 ~l~gikkIgIIG~---G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~----~~~s~~~A~~~G~~~~d~~~~~~~eav~~A 179 (462)
.++| .||++||= +++..|++..|...+ |.++.+.... .....+.+++.|.... .+.+++|++++|
T Consensus 156 ~l~g-~kia~vGD~~~~rv~~Sl~~~l~~~~-----g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~--~~~d~~ea~~~a 227 (338)
T PRK08192 156 GIDG-MHIAMVGDLKFGRTVHSLSRLLCMYK-----NVSFTLVSPKELAMPDYVISDIENAGHKIT--ITDQLEGNLDKA 227 (338)
T ss_pred CcCC-CEEEEECcCCCCchHHHHHHHHHHhc-----CCEEEEECCccccCCHHHHHHHHHcCCeEE--EEcCHHHHHccC
Confidence 5788 99999997 588999888765331 6777665433 2233455666564321 157889999999
Q ss_pred CeEEEe
Q 012479 180 DLVLLL 185 (462)
Q Consensus 180 DvViLa 185 (462)
|+|...
T Consensus 228 Dvvyt~ 233 (338)
T PRK08192 228 DILYLT 233 (338)
T ss_pred CEEEEc
Confidence 999984
No 424
>PRK07806 short chain dehydrogenase; Provisional
Probab=87.96 E-value=4.2 Score=38.68 Aligned_cols=36 Identities=25% Similarity=0.253 Sum_probs=30.5
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCC
Q 012479 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (462)
Q Consensus 108 l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~ 150 (462)
++| ++|.|.|. |-+|.++++.|.+. |.+|++..|+.
T Consensus 4 ~~~-k~vlItGasggiG~~l~~~l~~~------G~~V~~~~r~~ 40 (248)
T PRK07806 4 LPG-KTALVTGSSRGIGADTAKILAGA------GAHVVVNYRQK 40 (248)
T ss_pred CCC-cEEEEECCCCcHHHHHHHHHHHC------CCEEEEEeCCc
Confidence 567 89999996 89999999999988 98887766653
No 425
>PLN02527 aspartate carbamoyltransferase
Probab=87.89 E-value=1.7 Score=44.56 Aligned_cols=71 Identities=17% Similarity=0.124 Sum_probs=49.1
Q ss_pred ccCCCCEEEEEccc---chHHHHHHHHHHhhhhhcCCcEEEEEecC----CchhHHHHHHcCceecCCCcCCHhhhhccC
Q 012479 107 AFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAEARAAGFTEENGTLGDIYETISGS 179 (462)
Q Consensus 107 ~l~gikkIgIIG~G---~mG~AiA~~Lrds~~~~g~G~~Vivg~r~----~~~s~~~A~~~G~~~~d~~~~~~~eav~~A 179 (462)
.++| .||++||-+ +...|++..+...+ |.++.+...+ .....+.+++.|.... ...++++++++|
T Consensus 148 ~l~g-~kva~vGD~~~~rv~~Sl~~~~~~~~-----g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~~~a 219 (306)
T PLN02527 148 RLDG-IKVGLVGDLANGRTVRSLAYLLAKYE-----DVKIYFVAPDVVKMKDDIKDYLTSKGVEWE--ESSDLMEVASKC 219 (306)
T ss_pred CcCC-CEEEEECCCCCChhHHHHHHHHHhcC-----CCEEEEECCCccCCCHHHHHHHHHcCCEEE--EEcCHHHHhCCC
Confidence 4788 999999976 57899998876531 6677665443 2233455666565321 146889999999
Q ss_pred CeEEEe
Q 012479 180 DLVLLL 185 (462)
Q Consensus 180 DvViLa 185 (462)
|+|...
T Consensus 220 Dvvyt~ 225 (306)
T PLN02527 220 DVLYQT 225 (306)
T ss_pred CEEEEC
Confidence 999983
No 426
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=87.77 E-value=0.8 Score=48.28 Aligned_cols=66 Identities=17% Similarity=0.145 Sum_probs=42.2
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecC-CchhHHHHHHcCceecC-CCcCCHhhhhccCCeEEE
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTEEN-GTLGDIYETISGSDLVLL 184 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~-~~~s~~~A~~~G~~~~d-~~~~~~~eav~~ADvViL 184 (462)
+++|||||-|-.|.=++..-+.- |+++++-+.. +......| ......+ +....+.++++.||+|-.
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~l------G~~v~vLdp~~~~PA~~va--~~~i~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARL------GIKVIVLDPDADAPAAQVA--DRVIVAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhc------CCEEEEecCCCCCchhhcc--cceeecCCCCHHHHHHHHhhCCEEEE
Confidence 38999999999999999998887 9988775533 22222222 2222100 001235678889998854
No 427
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=87.75 E-value=2 Score=43.82 Aligned_cols=35 Identities=20% Similarity=0.249 Sum_probs=29.0
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEe
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGL 147 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~ 147 (462)
+.|+. .+|.|||+|-.|..+|+||..+ |+ ++.+.+
T Consensus 15 ~kL~~-s~VLIvG~gGLG~EiaKnLala------GVg~itI~D 50 (286)
T cd01491 15 KKLQK-SNVLISGLGGLGVEIAKNLILA------GVKSVTLHD 50 (286)
T ss_pred HHHhc-CcEEEEcCCHHHHHHHHHHHHc------CCCeEEEEc
Confidence 56667 8999999999999999999988 77 454444
No 428
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=87.74 E-value=1.4 Score=46.88 Aligned_cols=64 Identities=20% Similarity=0.235 Sum_probs=44.5
Q ss_pred EEEEEcccchHHH-HHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 113 QIGVIGWGSQGPA-QAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 113 kIgIIG~G~mG~A-iA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
+|-|||.|-.|.+ +|+-|++. |.+|.+.+.......+..++.|+... .....+.++++|+||+.
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~------G~~v~~~D~~~~~~~~~l~~~gi~~~---~g~~~~~~~~~d~vV~s 65 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNR------GYQVSGSDIAENATTKRLEALGIPIY---IGHSAENLDDADVVVVS 65 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHC------CCeEEEECCCcchHHHHHHHCcCEEe---CCCCHHHCCCCCEEEEC
Confidence 4789999999998 99999999 99987766543333344455677641 11223456789998874
No 429
>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed
Probab=87.66 E-value=0.99 Score=47.03 Aligned_cols=64 Identities=20% Similarity=0.159 Sum_probs=42.3
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCc-hhHHHHHHcCceecCCCcCC---HhhhhccCCeEEE
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-RSFAEARAAGFTEENGTLGD---IYETISGSDLVLL 184 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~-~s~~~A~~~G~~~~d~~~~~---~~eav~~ADvViL 184 (462)
+++|+|||.|-.|.-+++.+++. |++|++.+.... .....+ +..... ...| +.+.++.+|+|..
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~l------G~~v~~~d~~~~~pa~~~a--d~~~~~--~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPL------GYKVIVLDPDPDSPAAQVA--DEVIVA--DYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHc------CCEEEEEeCCCCCchhHhC--ceEEec--CCCCHHHHHHHHhcCCEEEe
Confidence 48999999999999999999998 999877655422 222222 222210 1223 4557789998743
No 430
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=87.61 E-value=5 Score=40.94 Aligned_cols=93 Identities=23% Similarity=0.294 Sum_probs=55.9
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-CCCcCCHhh----hh--ccCCe
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYE----TI--SGSDL 181 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~e----av--~~ADv 181 (462)
+| .+|.|+|.|.+|...++-++.. |.+.++..+.+.+..+.+++.|.... +....+..+ .. ...|+
T Consensus 176 ~g-~~VlV~G~g~vG~~a~~~ak~~------G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~ 248 (358)
T TIGR03451 176 RG-DSVAVIGCGGVGDAAIAGAALA------GASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADV 248 (358)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCE
Confidence 46 8999999999999999988888 87533444444556788888886210 100112212 12 14688
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
|+=++-.. ..+++....++++-.++..
T Consensus 249 vid~~g~~---~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 249 VIDAVGRP---ETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred EEECCCCH---HHHHHHHHHhccCCEEEEE
Confidence 88777632 2233333455666555544
No 431
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=87.57 E-value=2.4 Score=45.92 Aligned_cols=35 Identities=31% Similarity=0.412 Sum_probs=30.2
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEec
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r 148 (462)
.-.| ++|+|||.|..|.+.|..|++. |++|++..+
T Consensus 140 ~~~~-~~V~IIGaG~aGl~aA~~L~~~------g~~V~v~e~ 174 (485)
T TIGR01317 140 KRTG-KKVAVVGSGPAGLAAADQLNRA------GHTVTVFER 174 (485)
T ss_pred CCCC-CEEEEECCcHHHHHHHHHHHHc------CCeEEEEec
Confidence 3457 8999999999999999999998 888877654
No 432
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=87.56 E-value=4.6 Score=39.04 Aligned_cols=92 Identities=18% Similarity=0.184 Sum_probs=57.0
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcE-EEEEecCCchhHHHHHHcCceecCCCcCCHhhh--hccCCeEEE
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEENGTLGDIYET--ISGSDLVLL 184 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~-Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~ea--v~~ADvViL 184 (462)
-+| .+|.|.|.|.+|.+..+.++.. |.+ |++ .+.+.+..+.+++.|.. +.......+. -...|+|+-
T Consensus 96 ~~g-~~vlI~g~g~vg~~~i~~a~~~------g~~~vi~-~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~d~vl~ 165 (277)
T cd08255 96 RLG-ERVAVVGLGLVGLLAAQLAKAA------GAREVVG-VDPDAARRELAEALGPA--DPVAADTADEIGGRGADVVIE 165 (277)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCcEEE-ECCCHHHHHHHHHcCCC--ccccccchhhhcCCCCCEEEE
Confidence 356 8999999999999999888887 877 554 44444456788888721 1111111111 135799998
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
++.... .+.+....++++..++..+
T Consensus 166 ~~~~~~---~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 166 ASGSPS---ALETALRLLRDRGRVVLVG 190 (277)
T ss_pred ccCChH---HHHHHHHHhcCCcEEEEEe
Confidence 766432 3444555666666555443
No 433
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=87.52 E-value=2.1 Score=46.14 Aligned_cols=71 Identities=15% Similarity=0.163 Sum_probs=49.2
Q ss_pred cCCCCEEEEEcc---cchHHHHHHHHHHhhhhhcCCcEEEEEecCC----chhHHHHHHcCceecCCCcCCHhhhhccCC
Q 012479 108 FNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAEARAAGFTEENGTLGDIYETISGSD 180 (462)
Q Consensus 108 l~gikkIgIIG~---G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~----~~s~~~A~~~G~~~~d~~~~~~~eav~~AD 180 (462)
++| +||++||- +++..|++..+...+ |.++.+...+. +...+.+++.|.... .+.+++|++++||
T Consensus 239 l~G-~kIa~vGD~~~~rv~~Sl~~~la~~~-----G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~--~~~d~~eav~~AD 310 (429)
T PRK11891 239 VDG-AHIALVGDLKYGRTVHSLVKLLALYR-----GLKFTLVSPPTLEMPAYIVEQISRNGHVIE--QTDDLAAGLRGAD 310 (429)
T ss_pred cCC-CEEEEECcCCCChHHHHHHHHHHHhc-----CCEEEEECCCccccCHHHHHHHHhcCCeEE--EEcCHHHHhCCCC
Confidence 788 99999998 489999998876421 77776654332 233455555564321 1478899999999
Q ss_pred eEEEee
Q 012479 181 LVLLLI 186 (462)
Q Consensus 181 vViLav 186 (462)
+|....
T Consensus 311 VVYt~~ 316 (429)
T PRK11891 311 VVYATR 316 (429)
T ss_pred EEEEcC
Confidence 999843
No 434
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=87.52 E-value=2.4 Score=47.67 Aligned_cols=73 Identities=25% Similarity=0.206 Sum_probs=49.3
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCc--------------------hhHHHHHHcCceecCC
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS--------------------RSFAEARAAGFTEENG 167 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~--------------------~s~~~A~~~G~~~~d~ 167 (462)
-.+ ++|+|||.|..|.+.|..|+.. |++|++..+... ...+...+.|+...-+
T Consensus 191 ~~~-k~VaIIGaGpAGl~aA~~La~~------G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~ 263 (652)
T PRK12814 191 KSG-KKVAIIGAGPAGLTAAYYLLRK------GHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFN 263 (652)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHC------CCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeC
Confidence 456 8999999999999999999998 888877765321 1134455667643111
Q ss_pred Cc----CCHhhhhccCCeEEEeec
Q 012479 168 TL----GDIYETISGSDLVLLLIS 187 (462)
Q Consensus 168 ~~----~~~~eav~~ADvViLavp 187 (462)
+. .+.++.....|.||+++-
T Consensus 264 ~~v~~dv~~~~~~~~~DaVilAtG 287 (652)
T PRK12814 264 TVFGRDITLEELQKEFDAVLLAVG 287 (652)
T ss_pred CcccCccCHHHHHhhcCEEEEEcC
Confidence 11 123444456899999885
No 435
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=87.49 E-value=6.8 Score=36.99 Aligned_cols=94 Identities=19% Similarity=0.238 Sum_probs=56.9
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-CCCcCCHhhh-----hccCCe
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYET-----ISGSDL 181 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~ea-----v~~ADv 181 (462)
.+| .+|.|+|.|.+|.+.++-++.. |.+|++..+. ....+.+++.|.... +....+..+. -+..|+
T Consensus 133 ~~~-~~vli~g~~~~G~~~~~~a~~~------g~~v~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~ 204 (271)
T cd05188 133 KPG-DTVLVLGAGGVGLLAAQLAKAA------GARVIVTDRS-DEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADV 204 (271)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEEcCC-HHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCE
Confidence 456 8999999999999999988887 8777665544 344566666664310 1001112221 246899
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEEEec
Q 012479 182 VLLLISDAAQADNYEKIFSCMKPNSILGLSH 212 (462)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~gaiL~~a~ 212 (462)
|+.++... ..+..+...++++..++..+
T Consensus 205 vi~~~~~~---~~~~~~~~~l~~~G~~v~~~ 232 (271)
T cd05188 205 VIDAVGGP---ETLAQALRLLRPGGRIVVVG 232 (271)
T ss_pred EEECCCCH---HHHHHHHHhcccCCEEEEEc
Confidence 99888763 23344445555655554443
No 436
>PRK01581 speE spermidine synthase; Validated
Probab=87.49 E-value=3.9 Score=43.37 Aligned_cols=96 Identities=16% Similarity=0.209 Sum_probs=58.8
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc---------CceecCCC----cCCHhhh
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA---------GFTEENGT----LGDIYET 175 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~---------G~~~~d~~----~~~~~ea 175 (462)
.+.++|.|||+| .|.+....|+.. +...++..+.++...+.|++. ++. |.. ..|..+.
T Consensus 149 ~~PkrVLIIGgG-dG~tlrelLk~~------~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~--DpRV~vvi~Da~~f 219 (374)
T PRK01581 149 IDPKRVLILGGG-DGLALREVLKYE------TVLHVDLVDLDGSMINMARNVPELVSLNKSAFF--DNRVNVHVCDAKEF 219 (374)
T ss_pred CCCCEEEEECCC-HHHHHHHHHhcC------CCCeEEEEeCCHHHHHHHHhccccchhccccCC--CCceEEEECcHHHH
Confidence 334899999998 455554445433 343455666677777888752 111 100 2333333
Q ss_pred h----ccCCeEEEeecchhH--------HHHHHHHHhcCCCCcEEEEecc
Q 012479 176 I----SGSDLVLLLISDAAQ--------ADNYEKIFSCMKPNSILGLSHG 213 (462)
Q Consensus 176 v----~~ADvViLavpd~a~--------~~vl~eI~~~Lk~gaiL~~a~G 213 (462)
+ ..-|+||+=.||... .+.++.+...|+||-+++.-++
T Consensus 220 L~~~~~~YDVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 220 LSSPSSLYDVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred HHhcCCCccEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEecC
Confidence 3 245999999876422 4577889999999998665444
No 437
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.47 E-value=3.7 Score=39.44 Aligned_cols=84 Identities=17% Similarity=0.098 Sum_probs=49.9
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE-
Q 012479 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL- 184 (462)
Q Consensus 107 ~l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL- 184 (462)
.++| |++.|+|. |-+|.++++.|.+. |.+|++..++..+..+.....+ ...+.+
T Consensus 4 ~l~~-k~~lItGas~gIG~~~a~~l~~~------G~~v~~~~~~~~~~~~~l~~~~-----------------~~~~~~D 59 (255)
T PRK06463 4 RFKG-KVALITGGTRGIGRAIAEAFLRE------GAKVAVLYNSAENEAKELREKG-----------------VFTIKCD 59 (255)
T ss_pred CcCC-CEEEEeCCCChHHHHHHHHHHHC------CCEEEEEeCCcHHHHHHHHhCC-----------------CeEEEec
Confidence 3578 99999995 79999999999998 9888766554332222111111 111111
Q ss_pred eecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 185 LISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 185 avpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
...+....++++++...+.+=.+|+..+|+
T Consensus 60 l~~~~~~~~~~~~~~~~~~~id~li~~ag~ 89 (255)
T PRK06463 60 VGNRDQVKKSKEVVEKEFGRVDVLVNNAGI 89 (255)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCc
Confidence 123444556777766555333356677765
No 438
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.43 E-value=1.5 Score=46.50 Aligned_cols=65 Identities=14% Similarity=0.096 Sum_probs=43.7
Q ss_pred CEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCch-hHHHHHH--cCceecCCCcC-CHhhhhccCCeEEEe
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR-SFAEARA--AGFTEENGTLG-DIYETISGSDLVLLL 185 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~-s~~~A~~--~G~~~~d~~~~-~~~eav~~ADvViLa 185 (462)
-+|.|||+|-.|.++|+-|++. |.+|.+.+..... ..+..++ .|+... .. ...+.+.++|+||..
T Consensus 7 ~~~~v~G~G~sG~s~a~~L~~~------G~~v~~~D~~~~~~~~~~l~~~~~g~~~~---~~~~~~~~~~~~d~vV~s 75 (448)
T PRK03803 7 GLHIVVGLGKTGLSVVRFLARQ------GIPFAVMDSREQPPGLDTLAREFPDVELR---CGGFDCELLVQASEIIIS 75 (448)
T ss_pred CeEEEEeecHhHHHHHHHHHhC------CCeEEEEeCCCCchhHHHHHhhcCCcEEE---eCCCChHHhcCCCEEEEC
Confidence 4799999999999999999999 9988776654322 2222333 366531 11 234556789988764
No 439
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=87.33 E-value=7.4 Score=32.62 Aligned_cols=94 Identities=16% Similarity=0.167 Sum_probs=54.8
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHH----cCceecCCCcCCH----hhhhccCC
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARA----AGFTEENGTLGDI----YETISGSD 180 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~----~G~~~~d~~~~~~----~eav~~AD 180 (462)
++ ++|.-||+|.-. ++..+.+... +.+ +++.+.++...+.+++ .+.....-...+. ....+..|
T Consensus 19 ~~-~~vldlG~G~G~--~~~~l~~~~~----~~~-v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 90 (124)
T TIGR02469 19 PG-DVLWDIGAGSGS--ITIEAARLVP----NGR-VYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPD 90 (124)
T ss_pred CC-CEEEEeCCCCCH--HHHHHHHHCC----Cce-EEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCC
Confidence 35 789999999933 3333433300 224 4666665554544432 3321000001121 12235789
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEE
Q 012479 181 LVLLLISDAAQADNYEKIFSCMKPNSILGL 210 (462)
Q Consensus 181 vViLavpd~a~~~vl~eI~~~Lk~gaiL~~ 210 (462)
+|++.-++....++++++...|++|..+++
T Consensus 91 ~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~ 120 (124)
T TIGR02469 91 RVFIGGSGGLLQEILEAIWRRLRPGGRIVL 120 (124)
T ss_pred EEEECCcchhHHHHHHHHHHHcCCCCEEEE
Confidence 999987777777899999999999887653
No 440
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=87.29 E-value=1.7 Score=46.36 Aligned_cols=74 Identities=18% Similarity=0.153 Sum_probs=51.8
Q ss_pred cCCCCEEEEEccc----------chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc--CceecCCCcCCHhhh
Q 012479 108 FNGINQIGVIGWG----------SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGDIYET 175 (462)
Q Consensus 108 l~gikkIgIIG~G----------~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~--G~~~~d~~~~~~~ea 175 (462)
|+| |+|||.|+- +-...++..|.+. |.+|++++.. ..+.+... ++.. ..+.+++
T Consensus 308 l~G-k~iavlgLafKpnTDD~ReSpa~~vi~~L~~~------Ga~V~aYDP~---a~~~~~~~~~~~~~----~~~~~~~ 373 (414)
T COG1004 308 LKG-KTIAVLGLAFKPNTDDMRESPALDIIKRLQEK------GAEVIAYDPV---AMENAFRNFPDVEL----ESDAEEA 373 (414)
T ss_pred CCC-cEEEEEEEeecCCCccchhchHHHHHHHHHHC------CCEEEEECch---hhHHHHhcCCCceE----eCCHHHH
Confidence 889 999999973 3345566666666 8888776543 22333322 1333 5789999
Q ss_pred hccCCeEEEeecchhHHHHH
Q 012479 176 ISGSDLVLLLISDAAQADNY 195 (462)
Q Consensus 176 v~~ADvViLavpd~a~~~vl 195 (462)
+++||++++++-.+...++=
T Consensus 374 ~~~aDaivi~tew~ef~~~d 393 (414)
T COG1004 374 LKGADAIVINTEWDEFRDLD 393 (414)
T ss_pred HhhCCEEEEeccHHHHhccC
Confidence 99999999999987776643
No 441
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=87.25 E-value=3.5 Score=41.39 Aligned_cols=92 Identities=21% Similarity=0.171 Sum_probs=55.8
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcE-EEEEecCCchhHHHHHHcCceec-CCCcCCHh---hhhc--cCC
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEE-NGTLGDIY---ETIS--GSD 180 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~-Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~---eav~--~AD 180 (462)
..| .+|.|+|.|.+|...++-++.. |.+ |++. ..+++..+.+++.|.... +....+.+ +... ..|
T Consensus 162 ~~g-~~vlV~G~G~vG~~~~~~ak~~------G~~~vi~~-~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d 233 (339)
T cd08239 162 SGR-DTVLVVGAGPVGLGALMLARAL------GAEDVIGV-DPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGAD 233 (339)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEE-CCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCC
Confidence 347 8999999999999999999888 887 6554 444455777888886310 10001111 2222 478
Q ss_pred eEEEeecchhHHHHHHHHHhcCCCCcEEEE
Q 012479 181 LVLLLISDAAQADNYEKIFSCMKPNSILGL 210 (462)
Q Consensus 181 vViLavpd~a~~~vl~eI~~~Lk~gaiL~~ 210 (462)
+||-++..... +.+....++++..++.
T Consensus 234 ~vid~~g~~~~---~~~~~~~l~~~G~~v~ 260 (339)
T cd08239 234 VAIECSGNTAA---RRLALEAVRPWGRLVL 260 (339)
T ss_pred EEEECCCCHHH---HHHHHHHhhcCCEEEE
Confidence 88888775433 2232334555555443
No 442
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=87.19 E-value=0.83 Score=47.50 Aligned_cols=34 Identities=32% Similarity=0.336 Sum_probs=30.2
Q ss_pred CCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCC
Q 012479 111 INQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (462)
Q Consensus 111 ikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~ 150 (462)
|.+|.|||.|.+|.+.|..|.+. |.+|++..+..
T Consensus 1 ~~~vvIIGaG~~G~~~A~~La~~------g~~V~vle~~~ 34 (410)
T PRK12409 1 MSHIAVIGAGITGVTTAYALAQR------GYQVTVFDRHR 34 (410)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC------CCeEEEEeCCC
Confidence 46899999999999999999998 99998877653
No 443
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=87.17 E-value=4.6 Score=41.48 Aligned_cols=90 Identities=18% Similarity=0.235 Sum_probs=53.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcCceec-CCCcCCHhhhhc-----cCCe
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS-----GSDL 181 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~eav~-----~ADv 181 (462)
.| .+|.|+|.|.+|...++-++.. |. +|++ .+.+++..+.+++.|.... +....+..+.+. ..|+
T Consensus 191 ~g-~~VlV~G~G~vG~~a~~lak~~------G~~~Vi~-~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~ 262 (371)
T cd08281 191 PG-QSVAVVGLGGVGLSALLGAVAA------GASQVVA-VDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDY 262 (371)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCcEEE-EcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCE
Confidence 46 8999999999999999988888 88 4544 4444556788888886320 100011112121 3688
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEE
Q 012479 182 VLLLISDAAQADNYEKIFSCMKPNSILG 209 (462)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~gaiL~ 209 (462)
||-++.... .+......++++-.++
T Consensus 263 vid~~G~~~---~~~~~~~~l~~~G~iv 287 (371)
T cd08281 263 AFEMAGSVP---ALETAYEITRRGGTTV 287 (371)
T ss_pred EEECCCChH---HHHHHHHHHhcCCEEE
Confidence 888775321 2333333455554443
No 444
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=87.01 E-value=2.2 Score=45.87 Aligned_cols=37 Identities=30% Similarity=0.337 Sum_probs=31.3
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecC
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~ 149 (462)
..-.+ ++|+|||.|..|.+.|..|++. |++|++..+.
T Consensus 139 ~~~~~-~~VvIIGaGpAGl~aA~~l~~~------G~~V~vie~~ 175 (471)
T PRK12810 139 VKRTG-KKVAVVGSGPAGLAAADQLARA------GHKVTVFERA 175 (471)
T ss_pred cCCCC-CEEEEECcCHHHHHHHHHHHhC------CCcEEEEecC
Confidence 33467 8999999999999999999998 8888777653
No 445
>PRK10637 cysG siroheme synthase; Provisional
Probab=86.93 E-value=3.8 Score=44.19 Aligned_cols=81 Identities=19% Similarity=0.077 Sum_probs=53.5
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecC-CchhHHHHHHcCceecCCCcCCHhhhhccCCeEEE
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK-GSRSFAEARAAGFTEENGTLGDIYETISGSDLVLL 184 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~-~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvViL 184 (462)
-.|+| ++|.|||.|..+..=++.|.+. |-+|.|.-.. .++..+.+.+..+...... .. .+-++++++||.
T Consensus 8 ~~l~~-~~vlvvGgG~vA~rk~~~ll~~------ga~v~visp~~~~~~~~l~~~~~i~~~~~~-~~-~~dl~~~~lv~~ 78 (457)
T PRK10637 8 CQLRD-RDCLLVGGGDVAERKARLLLDA------GARLTVNALAFIPQFTAWADAGMLTLVEGP-FD-ESLLDTCWLAIA 78 (457)
T ss_pred EEcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEcCCCCHHHHHHHhCCCEEEEeCC-CC-hHHhCCCEEEEE
Confidence 56899 9999999999999999999988 8777665433 2232233332222211111 12 245789999999
Q ss_pred eecchhHHHHH
Q 012479 185 LISDAAQADNY 195 (462)
Q Consensus 185 avpd~a~~~vl 195 (462)
||.|...-+-+
T Consensus 79 at~d~~~n~~i 89 (457)
T PRK10637 79 ATDDDAVNQRV 89 (457)
T ss_pred CCCCHHHhHHH
Confidence 99998765433
No 446
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=86.89 E-value=4.7 Score=42.35 Aligned_cols=71 Identities=18% Similarity=0.278 Sum_probs=54.7
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCH----------hhhhc-
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI----------YETIS- 177 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~----------~eav~- 177 (462)
.| .+++|+|+|-+|.|-.++++.. |-..|++.+.+....+.|++.|.+. +.+. .++..
T Consensus 185 ~G-~tvaV~GlGgVGlaaI~gA~~a------gA~~IiAvD~~~~Kl~~A~~fGAT~----~vn~~~~~~vv~~i~~~T~g 253 (366)
T COG1062 185 PG-DTVAVFGLGGVGLAAIQGAKAA------GAGRIIAVDINPEKLELAKKFGATH----FVNPKEVDDVVEAIVELTDG 253 (366)
T ss_pred CC-CeEEEEeccHhHHHHHHHHHHc------CCceEEEEeCCHHHHHHHHhcCCce----eecchhhhhHHHHHHHhcCC
Confidence 34 6899999999999999999988 7777788888888899999999864 2222 22233
Q ss_pred cCCeEEEeecchh
Q 012479 178 GSDLVLLLISDAA 190 (462)
Q Consensus 178 ~ADvViLavpd~a 190 (462)
.+|.+|-++-...
T Consensus 254 G~d~~~e~~G~~~ 266 (366)
T COG1062 254 GADYAFECVGNVE 266 (366)
T ss_pred CCCEEEEccCCHH
Confidence 6889988886543
No 447
>TIGR03316 ygeW probable carbamoyltransferase YgeW. Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.
Probab=86.83 E-value=2.4 Score=44.56 Aligned_cols=71 Identities=11% Similarity=0.030 Sum_probs=47.9
Q ss_pred ccCCCCEEEEEccc--------chHHHHHHHHHHhhhhhcCCcEEEEEecC----CchhHHH----HHHcCceecCCCcC
Q 012479 107 AFNGINQIGVIGWG--------SQGPAQAQNLRDSLAEAKSDIVVKVGLRK----GSRSFAE----ARAAGFTEENGTLG 170 (462)
Q Consensus 107 ~l~gikkIgIIG~G--------~mG~AiA~~Lrds~~~~g~G~~Vivg~r~----~~~s~~~----A~~~G~~~~d~~~~ 170 (462)
.|+| +||+|+|.| ++..|++..+... |.++.+...+ .+...+. +++.|.... .+.
T Consensus 167 ~l~g-~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~------G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~--~~~ 237 (357)
T TIGR03316 167 NLKG-KKFAMTWAYSPSYGKPLSVPQGIIGLMTRF------GMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFN--IVN 237 (357)
T ss_pred ccCC-CEEEEEeccccccCccchHHHHHHHHHHHc------CCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEE--EEc
Confidence 4678 899999853 4557788888776 8887776543 2222333 344564310 157
Q ss_pred CHhhhhccCCeEEEee
Q 012479 171 DIYETISGSDLVLLLI 186 (462)
Q Consensus 171 ~~~eav~~ADvViLav 186 (462)
+++|++++||+|..-.
T Consensus 238 d~~ea~~~aDvvyt~~ 253 (357)
T TIGR03316 238 SMDEAFKDADIVYPKS 253 (357)
T ss_pred CHHHHhCCCCEEEECC
Confidence 8999999999999874
No 448
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=86.82 E-value=4.1 Score=41.22 Aligned_cols=47 Identities=21% Similarity=0.222 Sum_probs=36.0
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCc
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF 162 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~ 162 (462)
.| .+|.|.|.|.+|...++-++.. |.++++....+....+.+++.|.
T Consensus 160 ~g-~~vlV~G~g~vG~~~~~~a~~~------G~~~v~~~~~~~~~~~~~~~~Ga 206 (347)
T PRK10309 160 EG-KNVIIIGAGTIGLLAIQCAVAL------GAKSVTAIDINSEKLALAKSLGA 206 (347)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEECCCHHHHHHHHHcCC
Confidence 57 8999999999999999999888 88644444444455667777775
No 449
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.81 E-value=2 Score=45.50 Aligned_cols=68 Identities=13% Similarity=0.159 Sum_probs=43.6
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchh-HHHHHHcCceecCCCcCCHhhhhccCCeEEEe
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRS-FAEARAAGFTEENGTLGDIYETISGSDLVLLL 185 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s-~~~A~~~G~~~~d~~~~~~~eav~~ADvViLa 185 (462)
+.+ ++|.|||+|-.|.+.+.-|++. |.+|.+.+...... .+. .+.|+.... -....+.+++.|+||..
T Consensus 4 ~~~-~~i~v~G~G~sG~s~~~~l~~~------G~~v~~~D~~~~~~~~~~-l~~g~~~~~--~~~~~~~~~~~d~vv~s 72 (438)
T PRK03806 4 YQG-KKVVIIGLGLTGLSCVDFFLAR------GVTPRVIDTRITPPGLDK-LPENVERHT--GSLNDEWLLAADLIVAS 72 (438)
T ss_pred cCC-CEEEEEeeCHHHHHHHHHHHHC------CCeEEEEcCCCCchhHHH-HhcCCEEEe--CCCCHHHhcCCCEEEEC
Confidence 456 8999999999999999988888 98887665433221 222 233764310 01233456778976654
No 450
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=86.78 E-value=2.2 Score=39.17 Aligned_cols=77 Identities=19% Similarity=0.182 Sum_probs=48.8
Q ss_pred EEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCH---hhhhccCCeEEEeecch
Q 012479 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI---YETISGSDLVLLLISDA 189 (462)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~---~eav~~ADvViLavpd~ 189 (462)
++.|+|.|..|..++..|+++ |++++...+.+.... ...-.|+.. +.+. .+..++.+.+++++++.
T Consensus 1 ~~~I~Gag~~g~~~~~~l~~~------g~~vvgfid~~~~~~-~~~i~g~pv----lg~~~~l~~~~~~~~~~iiai~~~ 69 (201)
T TIGR03570 1 KLVIIGAGGHGRVVADIAEDS------GWEIVGFLDDNPALQ-GTSVDGLPV----LGGDEDLLRYPPDEVDLVVAIGDN 69 (201)
T ss_pred CEEEEcCCHHHHHHHHHHHhC------CCEEEEEEcCCcccc-CcccCCccE----ECCHHHHhhhcccccEEEEEcCCH
Confidence 478999999999999999988 998776665533211 112245543 2233 33344568899999754
Q ss_pred hH-HHHHHHHHh
Q 012479 190 AQ-ADNYEKIFS 200 (462)
Q Consensus 190 a~-~~vl~eI~~ 200 (462)
.. .++++.+..
T Consensus 70 ~~~~~i~~~l~~ 81 (201)
T TIGR03570 70 KLRRRLFEKLKA 81 (201)
T ss_pred HHHHHHHHHHHh
Confidence 43 455555543
No 451
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=86.75 E-value=2.1 Score=43.95 Aligned_cols=70 Identities=17% Similarity=0.170 Sum_probs=48.7
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCC----chhHHH----HHHcCceecCCCcCCHhhhhc
Q 012479 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFAE----ARAAGFTEENGTLGDIYETIS 177 (462)
Q Consensus 107 ~l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~----~~s~~~----A~~~G~~~~d~~~~~~~eav~ 177 (462)
.++| .||++||- .+...|++..+..- |.+|.+...+. ....+. +.+.|.... ...+.+++++
T Consensus 145 ~l~g-~~v~~vGd~~~v~~Sl~~~l~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~--~~~d~~~a~~ 215 (304)
T TIGR00658 145 KLKG-VKVVYVGDGNNVCNSLMLAGAKL------GMDVVVATPEGYEPDADIVKKAQEIAKENGGSVE--LTHDPVEAVK 215 (304)
T ss_pred CCCC-cEEEEEeCCCchHHHHHHHHHHc------CCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEE--EEcCHHHHhC
Confidence 3788 89999996 68889999888877 88877765332 122222 344563210 1468899999
Q ss_pred cCCeEEEe
Q 012479 178 GSDLVLLL 185 (462)
Q Consensus 178 ~ADvViLa 185 (462)
+||+|...
T Consensus 216 ~aDvvy~~ 223 (304)
T TIGR00658 216 GADVIYTD 223 (304)
T ss_pred CCCEEEEc
Confidence 99999985
No 452
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=86.72 E-value=3.4 Score=41.99 Aligned_cols=46 Identities=20% Similarity=0.170 Sum_probs=36.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCc
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF 162 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~ 162 (462)
+| .+|.|+|.|.+|...++-++.. |.+|++..+ +++..+.+++.|+
T Consensus 166 ~g-~~VlV~G~G~vG~~a~~~a~~~------G~~vi~~~~-~~~~~~~~~~~Ga 211 (349)
T TIGR03201 166 KG-DLVIVIGAGGVGGYMVQTAKAM------GAAVVAIDI-DPEKLEMMKGFGA 211 (349)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCeEEEEcC-CHHHHHHHHHhCC
Confidence 46 8999999999999999999988 887655444 4455778888876
No 453
>PRK08374 homoserine dehydrogenase; Provisional
Probab=86.59 E-value=4.1 Score=42.24 Aligned_cols=95 Identities=17% Similarity=0.187 Sum_probs=50.9
Q ss_pred CEEEEEcccchHHHHHHHHHHh---hh-hhcCCcEEE-EEecCCc---------hhH-HHHHHcCceec--C--C-CcCC
Q 012479 112 NQIGVIGWGSQGPAQAQNLRDS---LA-EAKSDIVVK-VGLRKGS---------RSF-AEARAAGFTEE--N--G-TLGD 171 (462)
Q Consensus 112 kkIgIIG~G~mG~AiA~~Lrds---~~-~~g~G~~Vi-vg~r~~~---------~s~-~~A~~~G~~~~--d--~-~~~~ 171 (462)
.+|+|+|+|+.|..+++-|.+. +. ..|..++|+ |.+++.. ..+ +..++.|-... + + ...+
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS 82 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence 5899999999999999988773 11 122224433 2232110 111 11111221100 0 0 0125
Q ss_pred Hhhhh--ccCCeEEEeecchhHHHHHHHHHhcCCCCcEEE
Q 012479 172 IYETI--SGSDLVLLLISDAAQADNYEKIFSCMKPNSILG 209 (462)
Q Consensus 172 ~~eav--~~ADvViLavpd~a~~~vl~eI~~~Lk~gaiL~ 209 (462)
.+|.+ .++|+||=+++++...+++.+. ++.|..|+
T Consensus 83 ~~ell~~~~~DVvVd~t~~~~a~~~~~~a---l~~G~~VV 119 (336)
T PRK08374 83 PEEIVEEIDADIVVDVTNDKNAHEWHLEA---LKEGKSVV 119 (336)
T ss_pred HHHHHhcCCCCEEEECCCcHHHHHHHHHH---HhhCCcEE
Confidence 66666 4799999999877666666554 34555443
No 454
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=86.57 E-value=4.9 Score=41.17 Aligned_cols=93 Identities=16% Similarity=0.157 Sum_probs=56.2
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-CCC-cCCHhhhhccCCeEEEee
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGT-LGDIYETISGSDLVLLLI 186 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~-~~~~~eav~~ADvViLav 186 (462)
+| .++.|+|.|.+|...++-++.. |.++++..+.+.+....+++.|.... +.. ...+.+.....|+|+-++
T Consensus 180 ~g-~~vlV~G~G~vG~~av~~Ak~~------G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~ 252 (357)
T PLN02514 180 SG-LRGGILGLGGVGHMGVKIAKAM------GHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTV 252 (357)
T ss_pred CC-CeEEEEcccHHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECC
Confidence 57 8999999999999999998888 88776665554444444455776310 000 001112223568988888
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
... ..+++....++++..++..
T Consensus 253 g~~---~~~~~~~~~l~~~G~iv~~ 274 (357)
T PLN02514 253 PVF---HPLEPYLSLLKLDGKLILM 274 (357)
T ss_pred Cch---HHHHHHHHHhccCCEEEEE
Confidence 632 2333444556666655444
No 455
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=86.53 E-value=7.6 Score=36.53 Aligned_cols=37 Identities=22% Similarity=0.264 Sum_probs=31.2
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCc
Q 012479 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (462)
Q Consensus 108 l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~ 151 (462)
++| ++|.|.|. |.+|.++++.|.+. |.+|++..|+..
T Consensus 3 ~~~-~~vlItGa~g~iG~~~a~~l~~~------G~~V~~~~r~~~ 40 (238)
T PRK05786 3 LKG-KKVAIIGVSEGLGYAVAYFALKE------GAQVCINSRNEN 40 (238)
T ss_pred cCC-cEEEEECCCchHHHHHHHHHHHC------CCEEEEEeCCHH
Confidence 567 89999996 67999999999998 998887777644
No 456
>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]
Probab=86.34 E-value=7.5 Score=39.87 Aligned_cols=126 Identities=21% Similarity=0.205 Sum_probs=67.5
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc--EEEEEecCCchhHHHHHHcC----ceecCC-CcCCHhhhhcc
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI--VVKVGLRKGSRSFAEARAAG----FTEENG-TLGDIYETISG 178 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~--~Vivg~r~~~~s~~~A~~~G----~~~~d~-~~~~~~eav~~ 178 (462)
..++. .||.|+|.|+.|.|.|..+.-+ |+ ++.+-+-...+...++-... |...-. .....-.+-++
T Consensus 16 ~~~~~-~KItVVG~G~VGmAca~siL~k------~Ladel~lvDv~~dklkGE~MDLqH~s~f~~~~~V~~~~Dy~~sa~ 88 (332)
T KOG1495|consen 16 KEFKH-NKITVVGVGQVGMACAISILLK------GLADELVLVDVNEDKLKGEMMDLQHGSAFLSTPNVVASKDYSVSAN 88 (332)
T ss_pred ccccC-ceEEEEccchHHHHHHHHHHHh------hhhhceEEEecCcchhhhhhhhhccccccccCCceEecCcccccCC
Confidence 44555 8999999999999999998877 66 33333322222222222211 211000 01112245678
Q ss_pred CCeEEEeecchhH------------HHHHHHHHhcC---CCCcEEEEec-cchHH-HhhhccccCCCCccEEecccCC
Q 012479 179 SDLVLLLISDAAQ------------ADNYEKIFSCM---KPNSILGLSH-GFLLG-HLQSMGLDFPKNIGVIAVCPKG 239 (462)
Q Consensus 179 ADvViLavpd~a~------------~~vl~eI~~~L---k~gaiL~~a~-G~~i~-~~~~~~i~~p~~v~VV~v~Png 239 (462)
+|+||+..-..+. .++++.|.|.+ .|++++.+++ -+.+- |..-..-.+|++ +||+.=.|-
T Consensus 89 S~lvIiTAGarq~~gesRL~lvQrNV~ifK~iip~lv~ySpd~~llvvSNPVDilTYv~wKLSgfP~n-RViGsGcnL 165 (332)
T KOG1495|consen 89 SKLVIITAGARQSEGESRLDLVQRNVDIFKAIIPALVKYSPDCILLVVSNPVDILTYVTWKLSGFPKN-RVIGSGCNL 165 (332)
T ss_pred CcEEEEecCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCchHHHHHHHHHHcCCccc-ceeccCcCc
Confidence 9999998753332 34566666654 6677765444 44332 222112245554 677654443
No 457
>PRK07831 short chain dehydrogenase; Provisional
Probab=86.32 E-value=3.7 Score=39.59 Aligned_cols=42 Identities=17% Similarity=0.120 Sum_probs=33.6
Q ss_pred ccccccccCCCCEEEEEcc-c-chHHHHHHHHHHhhhhhcCCcEEEEEecC
Q 012479 101 FNLLPDAFNGINQIGVIGW-G-SQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (462)
Q Consensus 101 f~~~~~~l~gikkIgIIG~-G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~ 149 (462)
++.....++| +++.|.|. | -+|.++++.|.+. |.+|++..+.
T Consensus 8 ~~~~~~~~~~-k~vlItG~sg~gIG~~ia~~l~~~------G~~V~~~~~~ 51 (262)
T PRK07831 8 YVPGHGLLAG-KVVLVTAAAGTGIGSATARRALEE------GARVVISDIH 51 (262)
T ss_pred CCCcccccCC-CEEEEECCCcccHHHHHHHHHHHc------CCEEEEEeCC
Confidence 3344466788 99999997 6 5999999999998 9988776654
No 458
>PRK09242 tropinone reductase; Provisional
Probab=86.23 E-value=2.9 Score=40.12 Aligned_cols=36 Identities=19% Similarity=0.174 Sum_probs=30.7
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCC
Q 012479 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (462)
Q Consensus 108 l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~ 150 (462)
++| |++.|+|. |.+|.++++.|.+. |.+|++..|..
T Consensus 7 ~~~-k~~lItGa~~gIG~~~a~~l~~~------G~~v~~~~r~~ 43 (257)
T PRK09242 7 LDG-QTALITGASKGIGLAIAREFLGL------GADVLIVARDA 43 (257)
T ss_pred cCC-CEEEEeCCCchHHHHHHHHHHHc------CCEEEEEeCCH
Confidence 578 99999995 79999999999998 99887777653
No 459
>PRK13984 putative oxidoreductase; Provisional
Probab=86.23 E-value=2.7 Score=46.59 Aligned_cols=34 Identities=21% Similarity=0.232 Sum_probs=29.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecC
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~ 149 (462)
++ ++|.|||.|..|.+.|..|++. |++|.+..+.
T Consensus 282 ~~-~~v~IIGaG~aGl~aA~~L~~~------G~~v~vie~~ 315 (604)
T PRK13984 282 KN-KKVAIVGSGPAGLSAAYFLATM------GYEVTVYESL 315 (604)
T ss_pred CC-CeEEEECCCHHHHHHHHHHHHC------CCeEEEEecC
Confidence 56 8999999999999999999998 9888776543
No 460
>PRK09414 glutamate dehydrogenase; Provisional
Probab=85.99 E-value=2 Score=46.54 Aligned_cols=36 Identities=19% Similarity=0.229 Sum_probs=30.9
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEec
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r 148 (462)
..++| ++|+|.|+|+.|...|+-|.+. |.+|+...+
T Consensus 228 ~~l~g-~rVaIqGfGnVG~~~A~~L~~~------GakVVavsD 263 (445)
T PRK09414 228 DSFEG-KRVVVSGSGNVAIYAIEKAQQL------GAKVVTCSD 263 (445)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEEc
Confidence 56899 9999999999999999999988 887765534
No 461
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=85.83 E-value=4.5 Score=40.20 Aligned_cols=88 Identities=19% Similarity=0.176 Sum_probs=57.9
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhh-hhccCCeEEEee
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYE-TISGSDLVLLLI 186 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~e-av~~ADvViLav 186 (462)
.+| .+|.|.|.|.+|.+.++-++.. |.+|++..+.. ...+.+++.|... ..+..+ .-+..|+++.+.
T Consensus 166 ~~~-~~vlV~g~g~vg~~~~~la~~~------g~~v~~~~~~~-~~~~~~~~~g~~~----~~~~~~~~~~~vD~vi~~~ 233 (329)
T cd08298 166 KPG-QRLGLYGFGASAHLALQIARYQ------GAEVFAFTRSG-EHQELARELGADW----AGDSDDLPPEPLDAAIIFA 233 (329)
T ss_pred CCC-CEEEEECCcHHHHHHHHHHHHC------CCeEEEEcCCh-HHHHHHHHhCCcE----EeccCccCCCcccEEEEcC
Confidence 356 7999999999999999988887 88876665554 4466667777632 111111 223578888876
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEE
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGL 210 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~ 210 (462)
+.. ..++++...++++..++.
T Consensus 234 ~~~---~~~~~~~~~l~~~G~~v~ 254 (329)
T cd08298 234 PVG---ALVPAALRAVKKGGRVVL 254 (329)
T ss_pred CcH---HHHHHHHHHhhcCCEEEE
Confidence 543 345666667777665553
No 462
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=85.71 E-value=5 Score=40.16 Aligned_cols=91 Identities=21% Similarity=0.281 Sum_probs=62.4
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHH----HcCceecCCCcCCHhhhhc---cCC
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEAR----AAGFTEENGTLGDIYETIS---GSD 180 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~----~~G~~~~d~~~~~~~eav~---~AD 180 (462)
|.| ++|-=|||| |+.++.-|.+. |.+| .|.|-.++..+.|+ +.|+.. +=...+.+|... .-|
T Consensus 58 l~g-~~vLDvGCG--gG~Lse~mAr~------Ga~V-tgiD~se~~I~~Ak~ha~e~gv~i-~y~~~~~edl~~~~~~FD 126 (243)
T COG2227 58 LPG-LRVLDVGCG--GGILSEPLARL------GASV-TGIDASEKPIEVAKLHALESGVNI-DYRQATVEDLASAGGQFD 126 (243)
T ss_pred CCC-CeEEEecCC--ccHhhHHHHHC------CCee-EEecCChHHHHHHHHhhhhccccc-cchhhhHHHHHhcCCCcc
Confidence 788 999999998 56777777777 8776 57777777776666 345542 111345666655 568
Q ss_pred eEEEe-----ecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 181 LVLLL-----ISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 181 vViLa-----vpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
+|+.. +|+.. .++..+...+|||-++.++
T Consensus 127 vV~cmEVlEHv~dp~--~~~~~c~~lvkP~G~lf~S 160 (243)
T COG2227 127 VVTCMEVLEHVPDPE--SFLRACAKLVKPGGILFLS 160 (243)
T ss_pred EEEEhhHHHccCCHH--HHHHHHHHHcCCCcEEEEe
Confidence 88754 44433 3777888999999877655
No 463
>PLN02214 cinnamoyl-CoA reductase
Probab=85.71 E-value=3 Score=42.66 Aligned_cols=76 Identities=18% Similarity=0.154 Sum_probs=48.3
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHH-HHH--c---Cc--eecCCC-cCCHhhh
Q 012479 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAE-ARA--A---GF--TEENGT-LGDIYET 175 (462)
Q Consensus 106 ~~l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~-A~~--~---G~--~~~d~~-~~~~~ea 175 (462)
..+++ ++|.|.|. |.+|..++..|.+. |++|++..|........ ... . .+ ...|-. ..+..++
T Consensus 6 ~~~~~-~~vlVTGatGfIG~~l~~~L~~~------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~ 78 (342)
T PLN02214 6 ASPAG-KTVCVTGAGGYIASWIVKILLER------GYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAA 78 (342)
T ss_pred ccCCC-CEEEEECCCcHHHHHHHHHHHHC------cCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHH
Confidence 44677 99999997 99999999999998 99887766653321111 011 1 11 111100 1234567
Q ss_pred hccCCeEEEeecc
Q 012479 176 ISGSDLVLLLISD 188 (462)
Q Consensus 176 v~~ADvViLavpd 188 (462)
++.+|+||-+..+
T Consensus 79 ~~~~d~Vih~A~~ 91 (342)
T PLN02214 79 IDGCDGVFHTASP 91 (342)
T ss_pred HhcCCEEEEecCC
Confidence 8889999988753
No 464
>PLN02740 Alcohol dehydrogenase-like
Probab=85.70 E-value=4.8 Score=41.63 Aligned_cols=47 Identities=19% Similarity=0.331 Sum_probs=36.8
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcCc
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGF 162 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~ 162 (462)
-+| .+|.|+|.|.+|...++-++.. |. +|++. +.++...+.+++.|.
T Consensus 197 ~~g-~~VlV~G~G~vG~~a~q~ak~~------G~~~Vi~~-~~~~~r~~~a~~~Ga 244 (381)
T PLN02740 197 QAG-SSVAIFGLGAVGLAVAEGARAR------GASKIIGV-DINPEKFEKGKEMGI 244 (381)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHC------CCCcEEEE-cCChHHHHHHHHcCC
Confidence 346 8999999999999999999888 87 45544 444556788888886
No 465
>PRK06182 short chain dehydrogenase; Validated
Probab=85.68 E-value=5.3 Score=38.86 Aligned_cols=71 Identities=15% Similarity=0.124 Sum_probs=44.1
Q ss_pred CCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCH---hhhhc-------
Q 012479 109 NGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI---YETIS------- 177 (462)
Q Consensus 109 ~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~---~eav~------- 177 (462)
++ ++|.|.|. |-+|.++++.|.+. |.+|++..|..++ .+.....++......+.+. +++++
T Consensus 2 ~~-k~vlItGasggiG~~la~~l~~~------G~~V~~~~r~~~~-l~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~~~~ 73 (273)
T PRK06182 2 QK-KVALVTGASSGIGKATARRLAAQ------GYTVYGAARRVDK-MEDLASLGVHPLSLDVTDEASIKAAVDTIIAEEG 73 (273)
T ss_pred CC-CEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCHHH-HHHHHhCCCeEEEeeCCCHHHHHHHHHHHHHhcC
Confidence 45 89999995 79999999999988 9888776665433 3323233332110012232 23333
Q ss_pred cCCeEEEeec
Q 012479 178 GSDLVLLLIS 187 (462)
Q Consensus 178 ~ADvViLavp 187 (462)
..|+||.+..
T Consensus 74 ~id~li~~ag 83 (273)
T PRK06182 74 RIDVLVNNAG 83 (273)
T ss_pred CCCEEEECCC
Confidence 5799988764
No 466
>PRK07825 short chain dehydrogenase; Provisional
Probab=85.21 E-value=4.7 Score=39.16 Aligned_cols=36 Identities=22% Similarity=0.272 Sum_probs=30.4
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCC
Q 012479 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (462)
Q Consensus 108 l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~ 150 (462)
++| ++|.|.|. |-+|.++++.|.+. |.+|++..|+.
T Consensus 3 ~~~-~~ilVtGasggiG~~la~~l~~~------G~~v~~~~r~~ 39 (273)
T PRK07825 3 LRG-KVVAITGGARGIGLATARALAAL------GARVAIGDLDE 39 (273)
T ss_pred CCC-CEEEEeCCCchHHHHHHHHHHHC------CCEEEEEECCH
Confidence 567 89999996 78999999999998 99887776653
No 467
>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed
Probab=85.20 E-value=3.3 Score=43.13 Aligned_cols=70 Identities=14% Similarity=0.003 Sum_probs=46.2
Q ss_pred c-CCCCEEEEEccc-------chHHHHHHHHHHhhhhhcCCcEEEEEec-CC----chhHHH----HHHcCceecCCCcC
Q 012479 108 F-NGINQIGVIGWG-------SQGPAQAQNLRDSLAEAKSDIVVKVGLR-KG----SRSFAE----ARAAGFTEENGTLG 170 (462)
Q Consensus 108 l-~gikkIgIIG~G-------~mG~AiA~~Lrds~~~~g~G~~Vivg~r-~~----~~s~~~----A~~~G~~~~d~~~~ 170 (462)
+ +| .||+|++.| ++..|++..+..- |.++++... +. ....+. +.+.|.... ...
T Consensus 166 ~~~g-~ki~i~~~gd~~~~~~~v~~S~~~~~~~~------g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~ 236 (335)
T PRK04523 166 TLRG-KKYVLTWTYHPKPLNTAVANSALLIATRL------GMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLT--VSH 236 (335)
T ss_pred ccCC-CEEEEEEeccCcccccHHHHHHHHHHHHc------CCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEE--EEc
Confidence 5 78 899776543 6788888887776 888777655 21 122222 344563220 156
Q ss_pred CHhhhhccCCeEEEee
Q 012479 171 DIYETISGSDLVLLLI 186 (462)
Q Consensus 171 ~~~eav~~ADvViLav 186 (462)
+++|++++||+|..-.
T Consensus 237 d~~ea~~~aDvvy~~~ 252 (335)
T PRK04523 237 DIDSAYAGADVVYAKS 252 (335)
T ss_pred CHHHHhCCCCEEEece
Confidence 8899999999999754
No 468
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=85.13 E-value=4.6 Score=40.62 Aligned_cols=92 Identities=21% Similarity=0.260 Sum_probs=56.6
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-CCCcCC-HhhhhccCCeEEEee
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGD-IYETISGSDLVLLLI 186 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~-~~eav~~ADvViLav 186 (462)
+| .+|.|.|.|.+|.+.++-++.. |.++++..+. .+..+.+.+.|.... +....+ ..+.-...|+|+-++
T Consensus 169 ~g-~~vlV~g~g~vG~~~~~~a~~~------G~~v~~~~~~-~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~ 240 (337)
T cd05283 169 PG-KRVGVVGIGGLGHLAVKFAKAL------GAEVTAFSRS-PSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTV 240 (337)
T ss_pred CC-CEEEEECCcHHHHHHHHHHHHc------CCeEEEEcCC-HHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECC
Confidence 56 8999999999999999888888 8877665544 344666777775310 000001 111234679999888
Q ss_pred cchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 187 SDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 187 pd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
+... .+.+....++++..++..
T Consensus 241 g~~~---~~~~~~~~l~~~G~~v~~ 262 (337)
T cd05283 241 SASH---DLDPYLSLLKPGGTLVLV 262 (337)
T ss_pred CCcc---hHHHHHHHhcCCCEEEEE
Confidence 7652 234445556555554443
No 469
>PRK05717 oxidoreductase; Validated
Probab=85.12 E-value=4.8 Score=38.65 Aligned_cols=37 Identities=22% Similarity=0.048 Sum_probs=31.1
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecC
Q 012479 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (462)
Q Consensus 106 ~~l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~ 149 (462)
..|+| |+|.|.|. |.+|.++++.|.+. |.+|++..+.
T Consensus 6 ~~~~~-k~vlItG~sg~IG~~~a~~l~~~------g~~v~~~~~~ 43 (255)
T PRK05717 6 PGHNG-RVALVTGAARGIGLGIAAWLIAE------GWQVVLADLD 43 (255)
T ss_pred cccCC-CEEEEeCCcchHHHHHHHHHHHc------CCEEEEEcCC
Confidence 45788 99999995 89999999999988 8888776554
No 470
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=85.09 E-value=2.4 Score=45.33 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=32.7
Q ss_pred ccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCc
Q 012479 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (462)
Q Consensus 107 ~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~ 151 (462)
.|+| ++|+|=|+||.|.-.|+-|.+. |.+|++..+...
T Consensus 204 ~l~G-~rVaVQG~GNVg~~aa~~l~~~------GAkvva~sds~g 241 (411)
T COG0334 204 DLEG-ARVAVQGFGNVGQYAAEKLHEL------GAKVVAVSDSKG 241 (411)
T ss_pred CcCC-CEEEEECccHHHHHHHHHHHHc------CCEEEEEEcCCC
Confidence 3899 9999999999999999999888 888877666544
No 471
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=85.08 E-value=1.1 Score=43.89 Aligned_cols=66 Identities=18% Similarity=0.089 Sum_probs=43.4
Q ss_pred EEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCC---Hhhhh------cc-CCe
Q 012479 113 QIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGD---IYETI------SG-SDL 181 (462)
Q Consensus 113 kIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~---~~eav------~~-ADv 181 (462)
+|.|+|. |.+|..+++.|.+. |++|.+..|+.++.. ..|+........| ..+++ +. +|.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~------g~~V~~~~R~~~~~~----~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~ 70 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAA------SVPFLVASRSSSSSA----GPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISA 70 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhC------CCcEEEEeCCCcccc----CCCCccccccCCCHHHHHHHHhcccCcCCceeE
Confidence 4789996 99999999999998 999888887644321 1222110011222 33455 45 899
Q ss_pred EEEeecc
Q 012479 182 VLLLISD 188 (462)
Q Consensus 182 ViLavpd 188 (462)
|+++.|+
T Consensus 71 v~~~~~~ 77 (285)
T TIGR03649 71 VYLVAPP 77 (285)
T ss_pred EEEeCCC
Confidence 9988875
No 472
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=84.83 E-value=5.4 Score=40.31 Aligned_cols=91 Identities=21% Similarity=0.319 Sum_probs=56.2
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-CCCcCCHhh----hh--ccCCe
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYE----TI--SGSDL 181 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~e----av--~~ADv 181 (462)
+| .+|.|.|.|.+|.+.++-.+.. |..+++..+..++..+.+++.|+... +....+..+ .. +..|+
T Consensus 166 ~g-~~vlI~g~g~iG~~~~~lak~~------G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~ 238 (351)
T cd08285 166 LG-DTVAVFGIGPVGLMAVAGARLR------GAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVDA 238 (351)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCCCCCcE
Confidence 46 8999999999999999988887 88544555555566788888886310 100111111 22 24788
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEE
Q 012479 182 VLLLISDAAQADNYEKIFSCMKPNSILG 209 (462)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~gaiL~ 209 (462)
|+-++... +.+.+....++++..++
T Consensus 239 vld~~g~~---~~~~~~~~~l~~~G~~v 263 (351)
T cd08285 239 VIIAGGGQ---DTFEQALKVLKPGGTIS 263 (351)
T ss_pred EEECCCCH---HHHHHHHHHhhcCCEEE
Confidence 88777642 23444455566655544
No 473
>PRK08265 short chain dehydrogenase; Provisional
Probab=84.73 E-value=5.4 Score=38.67 Aligned_cols=37 Identities=22% Similarity=0.110 Sum_probs=31.2
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCC
Q 012479 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (462)
Q Consensus 107 ~l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~ 150 (462)
.++| +++-|.|. |-+|.++++.|.+. |.+|++..|+.
T Consensus 3 ~~~~-k~vlItGas~gIG~~ia~~l~~~------G~~V~~~~r~~ 40 (261)
T PRK08265 3 GLAG-KVAIVTGGATLIGAAVARALVAA------GARVAIVDIDA 40 (261)
T ss_pred CCCC-CEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 3677 99999996 78999999999998 99888776653
No 474
>PRK06057 short chain dehydrogenase; Provisional
Probab=84.63 E-value=7.8 Score=37.19 Aligned_cols=36 Identities=25% Similarity=0.240 Sum_probs=31.1
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecC
Q 012479 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (462)
Q Consensus 107 ~l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~ 149 (462)
.++| ++|-|+|. |-+|.++++.|.+. |.+|++..|+
T Consensus 4 ~~~~-~~vlItGasggIG~~~a~~l~~~------G~~v~~~~r~ 40 (255)
T PRK06057 4 RLAG-RVAVITGGGSGIGLATARRLAAE------GATVVVGDID 40 (255)
T ss_pred cCCC-CEEEEECCCchHHHHHHHHHHHc------CCEEEEEeCC
Confidence 4788 99999997 89999999999998 9888776664
No 475
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=84.62 E-value=3.2 Score=41.15 Aligned_cols=72 Identities=21% Similarity=0.194 Sum_probs=45.4
Q ss_pred CCCCEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhH--HHHHH-cC------ceecCCC-cCCHhhhhc
Q 012479 109 NGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF--AEARA-AG------FTEENGT-LGDIYETIS 177 (462)
Q Consensus 109 ~gikkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~--~~A~~-~G------~~~~d~~-~~~~~eav~ 177 (462)
+| ++|.|.| .|-+|..++..|.+. |++|++..|...... ..... .+ +...|-. .....++++
T Consensus 3 ~~-~~ilVtGatGfIG~~l~~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 75 (322)
T PLN02662 3 EG-KVVCVTGASGYIASWLVKLLLQR------GYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVD 75 (322)
T ss_pred CC-CEEEEECChHHHHHHHHHHHHHC------CCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHc
Confidence 35 8999999 699999999999999 998876666533211 11111 11 1111100 123556788
Q ss_pred cCCeEEEeec
Q 012479 178 GSDLVLLLIS 187 (462)
Q Consensus 178 ~ADvViLavp 187 (462)
++|+||.+..
T Consensus 76 ~~d~Vih~A~ 85 (322)
T PLN02662 76 GCEGVFHTAS 85 (322)
T ss_pred CCCEEEEeCC
Confidence 8999988764
No 476
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=84.57 E-value=1.8 Score=48.20 Aligned_cols=40 Identities=25% Similarity=0.350 Sum_probs=32.6
Q ss_pred cccCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCch
Q 012479 106 DAFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR 152 (462)
Q Consensus 106 ~~l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~ 152 (462)
+..+| ++|.|.|. |.+|.++++.|.+. |++|++..|+..+
T Consensus 76 ~~~~g-KvVLVTGATGgIG~aLAr~LLk~------G~~Vval~Rn~ek 116 (576)
T PLN03209 76 DTKDE-DLAFVAGATGKVGSRTVRELLKL------GFRVRAGVRSAQR 116 (576)
T ss_pred ccCCC-CEEEEECCCCHHHHHHHHHHHHC------CCeEEEEeCCHHH
Confidence 44556 89999995 89999999999998 9998887776443
No 477
>PRK10083 putative oxidoreductase; Provisional
Probab=84.50 E-value=9.5 Score=38.11 Aligned_cols=93 Identities=15% Similarity=0.146 Sum_probs=54.9
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHH-hhhhhcCCcEEEEEecCCchhHHHHHHcCceec-CCCcCCHhhhhc----cCCe
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRD-SLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYETIS----GSDL 181 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrd-s~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~eav~----~ADv 181 (462)
.+| .+|.|+|.|.+|.+.++.++. . |..+++..+..++..+.+++.|.... +....+..+.+. +.|+
T Consensus 159 ~~g-~~vlI~g~g~vG~~~~~~a~~~~------G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~g~~~d~ 231 (339)
T PRK10083 159 TEQ-DVALIYGAGPVGLTIVQVLKGVY------NVKAVIVADRIDERLALAKESGADWVINNAQEPLGEALEEKGIKPTL 231 (339)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHhC------CCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHhcCCCCCCE
Confidence 357 899999999999998887774 5 77655555555566778888886320 100112333332 3467
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEEE
Q 012479 182 VLLLISDAAQADNYEKIFSCMKPNSILGL 210 (462)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~gaiL~~ 210 (462)
|+-++... ..+.+....++++-.++.
T Consensus 232 vid~~g~~---~~~~~~~~~l~~~G~~v~ 257 (339)
T PRK10083 232 IIDAACHP---SILEEAVTLASPAARIVL 257 (339)
T ss_pred EEECCCCH---HHHHHHHHHhhcCCEEEE
Confidence 77777632 123333445555554443
No 478
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.29 E-value=2.7 Score=44.60 Aligned_cols=67 Identities=28% Similarity=0.307 Sum_probs=43.3
Q ss_pred EEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhH----HHHHHcCceecCCCcCCH---hhhhccCCeEEEe
Q 012479 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF----AEARAAGFTEENGTLGDI---YETISGSDLVLLL 185 (462)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~----~~A~~~G~~~~d~~~~~~---~eav~~ADvViLa 185 (462)
||.|||.|..|.+.|+.|.+. |+.|.+.++...... ..-++.|+...-+...+. .+..++.|+|+..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~------G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s 75 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQ------GWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVS 75 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHC------CCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEEC
Confidence 689999999999999999999 998877665432212 223445765310011111 1356789998883
No 479
>PRK14031 glutamate dehydrogenase; Provisional
Probab=84.18 E-value=3.1 Score=45.07 Aligned_cols=36 Identities=17% Similarity=0.064 Sum_probs=31.1
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEec
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLR 148 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r 148 (462)
..|+| ++|+|.|+|+.|...|+.|.+. |.+|++..+
T Consensus 224 ~~l~g-~rVaVQGfGNVG~~aA~~L~e~------GAkVVaVSD 259 (444)
T PRK14031 224 TDLKG-KVCLVSGSGNVAQYTAEKVLEL------GGKVVTMSD 259 (444)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEEEEEC
Confidence 46899 9999999999999999999998 888766333
No 480
>PRK07060 short chain dehydrogenase; Provisional
Probab=84.16 E-value=4.4 Score=38.29 Aligned_cols=37 Identities=27% Similarity=0.303 Sum_probs=31.2
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCC
Q 012479 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (462)
Q Consensus 107 ~l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~ 150 (462)
.++| +++.|.|. |.+|..+++.|.+. |++|++..|..
T Consensus 6 ~~~~-~~~lItGa~g~iG~~~a~~l~~~------g~~V~~~~r~~ 43 (245)
T PRK07060 6 DFSG-KSVLVTGASSGIGRACAVALAQR------GARVVAAARNA 43 (245)
T ss_pred ccCC-CEEEEeCCcchHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 3678 99999997 79999999999998 98887766653
No 481
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=84.11 E-value=4.3 Score=38.74 Aligned_cols=37 Identities=22% Similarity=0.217 Sum_probs=31.3
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCCc
Q 012479 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS 151 (462)
Q Consensus 108 l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~ 151 (462)
++| ++|.|.|. |.+|.++++.|.+. |.+|++..|..+
T Consensus 5 ~~~-~~vlItGasg~iG~~la~~l~~~------G~~v~~~~r~~~ 42 (262)
T PRK13394 5 LNG-KTAVVTGAASGIGKEIALELARA------GAAVAIADLNQD 42 (262)
T ss_pred CCC-CEEEEECCCChHHHHHHHHHHHC------CCeEEEEeCChH
Confidence 567 99999997 89999999999998 988877666543
No 482
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.04 E-value=4.4 Score=38.35 Aligned_cols=36 Identities=22% Similarity=0.191 Sum_probs=30.8
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCC
Q 012479 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (462)
Q Consensus 108 l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~ 150 (462)
+++ ++|.|+|. |.+|.++++.|.+. |.+|++..|+.
T Consensus 3 ~~~-~~vlItGasg~iG~~l~~~l~~~------G~~V~~~~r~~ 39 (251)
T PRK07231 3 LEG-KVAIVTGASSGIGEGIARRFAAE------GARVVVTDRNE 39 (251)
T ss_pred cCC-cEEEEECCCChHHHHHHHHHHHC------CCEEEEEeCCH
Confidence 577 89999995 89999999999998 99987776653
No 483
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=83.98 E-value=6.6 Score=39.59 Aligned_cols=95 Identities=17% Similarity=0.151 Sum_probs=56.9
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHc----Cceec-CCCcCCHhhh-hccCCe
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA----GFTEE-NGTLGDIYET-ISGSDL 181 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~----G~~~~-d~~~~~~~ea-v~~ADv 181 (462)
.+| ++|.-||+|+-..+ ..+... |..-+++.+.++...+.|++. ++... .....+.... -...|+
T Consensus 158 ~~g-~~VLDvGcGsG~la--i~aa~~------g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDl 228 (288)
T TIGR00406 158 LKD-KNVIDVGCGSGILS--IAALKL------GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADV 228 (288)
T ss_pred CCC-CEEEEeCCChhHHH--HHHHHc------CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceE
Confidence 467 89999999993334 344444 543456777776666555542 32100 0001111111 236799
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 182 VLLLISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
|+.-........+++++...|+||-.+.++
T Consensus 229 Vvan~~~~~l~~ll~~~~~~LkpgG~li~s 258 (288)
T TIGR00406 229 IVANILAEVIKELYPQFSRLVKPGGWLILS 258 (288)
T ss_pred EEEecCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 987665555667888899999999876554
No 484
>PLN02827 Alcohol dehydrogenase-like
Probab=83.90 E-value=7.6 Score=40.30 Aligned_cols=49 Identities=20% Similarity=0.310 Sum_probs=37.7
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCce
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFT 163 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~ 163 (462)
.+| .+|.|+|.|.+|...++-++.. |..+++..+.+++..+.|++.|..
T Consensus 192 ~~g-~~VlV~G~G~vG~~~iqlak~~------G~~~vi~~~~~~~~~~~a~~lGa~ 240 (378)
T PLN02827 192 SKG-SSVVIFGLGTVGLSVAQGAKLR------GASQIIGVDINPEKAEKAKTFGVT 240 (378)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEECCCHHHHHHHHHcCCc
Confidence 357 8999999999999999988888 875445555445567788888863
No 485
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=83.86 E-value=3.1 Score=42.74 Aligned_cols=70 Identities=17% Similarity=0.093 Sum_probs=46.7
Q ss_pred ccCCCCEEEEEccc-chHHHHHHHHHHhhhhhcCCcEEEEEecCC----chhHH----HHHHcCceecCCCcCCHhhhhc
Q 012479 107 AFNGINQIGVIGWG-SQGPAQAQNLRDSLAEAKSDIVVKVGLRKG----SRSFA----EARAAGFTEENGTLGDIYETIS 177 (462)
Q Consensus 107 ~l~gikkIgIIG~G-~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~----~~s~~----~A~~~G~~~~d~~~~~~~eav~ 177 (462)
.++| .||++||-+ ++..|++..+..- |.++.+..... ....+ .+++.|.... .+.+ .++++
T Consensus 144 ~l~g-~kva~vGD~~~v~~S~~~~~~~~------g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~--~~~d-~~a~~ 213 (302)
T PRK14805 144 DVSK-VKLAYVGDGNNVTHSLMYGAAIL------GATMTVICPPGHFPDGQIVAEAQELAAKSGGKLV--LTSD-IEAIE 213 (302)
T ss_pred CcCC-cEEEEEcCCCccHHHHHHHHHHc------CCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEE--EEcC-HHHHC
Confidence 4788 999999975 6778888888877 88877765432 12222 2344564321 1344 56899
Q ss_pred cCCeEEEee
Q 012479 178 GSDLVLLLI 186 (462)
Q Consensus 178 ~ADvViLav 186 (462)
+||+|...+
T Consensus 214 ~aDvvy~~~ 222 (302)
T PRK14805 214 GHDAIYTDT 222 (302)
T ss_pred CCCEEEeec
Confidence 999999865
No 486
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=83.73 E-value=3.8 Score=34.12 Aligned_cols=91 Identities=22% Similarity=0.172 Sum_probs=55.9
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcC----c----eecCCCcCCH---hhhhc
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAG----F----TEENGTLGDI---YETIS 177 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G----~----~~~d~~~~~~---~eav~ 177 (462)
+| .+|--||+|.-..++...-+.. +.+| ++.+.++...+.|++.- . ... ..+. .+...
T Consensus 1 p~-~~vLDlGcG~G~~~~~l~~~~~------~~~v-~gvD~s~~~~~~a~~~~~~~~~~~~i~~~---~~d~~~~~~~~~ 69 (112)
T PF12847_consen 1 PG-GRVLDLGCGTGRLSIALARLFP------GARV-VGVDISPEMLEIARERAAEEGLSDRITFV---QGDAEFDPDFLE 69 (112)
T ss_dssp TT-CEEEEETTTTSHHHHHHHHHHT------TSEE-EEEESSHHHHHHHHHHHHHTTTTTTEEEE---ESCCHGGTTTSS
T ss_pred CC-CEEEEEcCcCCHHHHHHHhcCC------CCEE-EEEeCCHHHHHHHHHHHHhcCCCCCeEEE---ECccccCcccCC
Confidence 46 8899999998444433332224 6674 67777776666665532 1 110 1233 34456
Q ss_pred cCCeEEEee-----cc--hhHHHHHHHHHhcCCCCcEEEE
Q 012479 178 GSDLVLLLI-----SD--AAQADNYEKIFSCMKPNSILGL 210 (462)
Q Consensus 178 ~ADvViLav-----pd--~a~~~vl~eI~~~Lk~gaiL~~ 210 (462)
+.|+|++.- -. ....++++.+...|+||-.+.+
T Consensus 70 ~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi 109 (112)
T PF12847_consen 70 PFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLVI 109 (112)
T ss_dssp CEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEEE
Confidence 789998866 11 2345678889999999887654
No 487
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=83.51 E-value=6.4 Score=39.08 Aligned_cols=92 Identities=21% Similarity=0.185 Sum_probs=53.7
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcE-EEEEecCCchhHHHHHHcCceec-CCCcCCHhh----hhccCCeE
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIV-VKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYE----TISGSDLV 182 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~-Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~e----av~~ADvV 182 (462)
+| .+|.|+|.|.+|.+.++.++.. |.+ +++..+ +++..+.+.+.|.... +....+..+ .-+..|+|
T Consensus 159 ~g-~~vlI~g~g~vg~~~~~la~~~------G~~~v~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v 230 (334)
T cd08234 159 PG-DSVLVFGAGPIGLLLAQLLKLN------GASRVTVAEP-NEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVV 230 (334)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCcEEEEECC-CHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEE
Confidence 56 8999999999999999998888 887 544444 3444566666675210 100011110 12458999
Q ss_pred EEeecchhHHHHHHHHHhcCCCCcEEEEe
Q 012479 183 LLLISDAAQADNYEKIFSCMKPNSILGLS 211 (462)
Q Consensus 183 iLavpd~a~~~vl~eI~~~Lk~gaiL~~a 211 (462)
+-++... ..+.+....|+++..++..
T Consensus 231 ~~~~~~~---~~~~~~~~~l~~~G~~v~~ 256 (334)
T cd08234 231 IEATGVP---KTLEQAIEYARRGGTVLVF 256 (334)
T ss_pred EECCCCh---HHHHHHHHHHhcCCEEEEE
Confidence 9887532 2333444445555444433
No 488
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.42 E-value=5.6 Score=38.47 Aligned_cols=87 Identities=16% Similarity=0.143 Sum_probs=51.6
Q ss_pred ccCCCCEEEEEccc---chHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceecCCCcCCHhhhhccCCeEE
Q 012479 107 AFNGINQIGVIGWG---SQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVL 183 (462)
Q Consensus 107 ~l~gikkIgIIG~G---~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~d~~~~~~~eav~~ADvVi 183 (462)
.++| |++.|.|.+ -+|.++|+.|.+. |.+|++..|+ .+..+...+. . ..... .-.+|+
T Consensus 4 ~l~~-k~~lItGas~~~gIG~a~a~~la~~------G~~Vi~~~r~-~~~~~~~~~~--~------~~~~~-~~~~Dl-- 64 (252)
T PRK06079 4 ILSG-KKIVVMGVANKRSIAWGCAQAIKDQ------GATVIYTYQN-DRMKKSLQKL--V------DEEDL-LVECDV-- 64 (252)
T ss_pred ccCC-CEEEEeCCCCCCchHHHHHHHHHHC------CCEEEEecCc-hHHHHHHHhh--c------cCcee-EEeCCC--
Confidence 3678 999999985 7999999999998 9998877664 2222222111 1 00000 112343
Q ss_pred EeecchhHHHHHHHHHhcCCCCcEEEEeccc
Q 012479 184 LLISDAAQADNYEKIFSCMKPNSILGLSHGF 214 (462)
Q Consensus 184 Lavpd~a~~~vl~eI~~~Lk~gaiL~~a~G~ 214 (462)
+.++.+.++++++.....+=.+|+..+|+
T Consensus 65 --~~~~~v~~~~~~~~~~~g~iD~lv~nAg~ 93 (252)
T PRK06079 65 --ASDESIERAFATIKERVGKIDGIVHAIAY 93 (252)
T ss_pred --CCHHHHHHHHHHHHHHhCCCCEEEEcccc
Confidence 34455566777766544222356666665
No 489
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=83.41 E-value=1.8 Score=43.56 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=29.4
Q ss_pred cccCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEE
Q 012479 106 DAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVK 144 (462)
Q Consensus 106 ~~l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vi 144 (462)
..++| +||+|.|+|+.|...|+-|.+. |.+|+
T Consensus 34 ~~l~g-~~vaIqGfGnVG~~~a~~L~e~------Gakvv 65 (254)
T cd05313 34 ETLKG-KRVAISGSGNVAQYAAEKLLEL------GAKVV 65 (254)
T ss_pred CCcCC-CEEEEECCCHHHHHHHHHHHHC------CCEEE
Confidence 67899 9999999999999999999988 88776
No 490
>PRK09186 flagellin modification protein A; Provisional
Probab=83.30 E-value=5.2 Score=38.12 Aligned_cols=36 Identities=19% Similarity=0.233 Sum_probs=30.1
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecCC
Q 012479 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (462)
Q Consensus 108 l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~ 150 (462)
++| |+|.|.|. |.+|.++|..|.+. |.+|++..|+.
T Consensus 2 ~~~-k~vlItGas~giG~~~a~~l~~~------g~~v~~~~r~~ 38 (256)
T PRK09186 2 LKG-KTILITGAGGLIGSALVKAILEA------GGIVIAADIDK 38 (256)
T ss_pred CCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEecCh
Confidence 567 99999995 79999999999998 98887766543
No 491
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=83.20 E-value=8.3 Score=39.54 Aligned_cols=47 Identities=17% Similarity=0.285 Sum_probs=36.2
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCc
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGF 162 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~ 162 (462)
+| .+|.|+|.|.+|.+.++-++.. |.++++.....+...+.+.+.|.
T Consensus 183 ~g-~~vlI~g~g~vG~~a~~~a~~~------G~~~v~~~~~~~~~~~~~~~~g~ 229 (365)
T cd05279 183 PG-STCAVFGLGGVGLSVIMGCKAA------GASRIIAVDINKDKFEKAKQLGA 229 (365)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCCHHHHHHHHHhCC
Confidence 46 8999999999999999988888 88655555444555677777775
No 492
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=83.01 E-value=1.8 Score=42.70 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=27.2
Q ss_pred EEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCC
Q 012479 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKG 150 (462)
Q Consensus 113 kIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~ 150 (462)
+|.|||.|.-|.+.|..|++. |++|++..+..
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~------G~~v~i~E~~~ 34 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARA------GIDVTIIERRP 34 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHT------TCEEEEEESSS
T ss_pred eEEEECCCHHHHHHHHHHHhc------ccccccchhcc
Confidence 699999999999999999999 99998887753
No 493
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=83.00 E-value=4.8 Score=38.55 Aligned_cols=36 Identities=25% Similarity=0.232 Sum_probs=31.0
Q ss_pred ccCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecC
Q 012479 107 AFNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (462)
Q Consensus 107 ~l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~ 149 (462)
.|+| |+|.|.|. |.+|.++++.|.+. |.+|++..|.
T Consensus 7 ~~~~-k~vlItGa~g~iG~~ia~~l~~~------G~~V~~~~r~ 43 (255)
T PRK07523 7 DLTG-RRALVTGSSQGIGYALAEGLAQA------GAEVILNGRD 43 (255)
T ss_pred CCCC-CEEEEECCcchHHHHHHHHHHHc------CCEEEEEeCC
Confidence 4788 99999995 89999999999988 9988776665
No 494
>PRK05867 short chain dehydrogenase; Provisional
Probab=82.91 E-value=4.3 Score=38.92 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=30.5
Q ss_pred cCCCCEEEEEcc-cchHHHHHHHHHHhhhhhcCCcEEEEEecC
Q 012479 108 FNGINQIGVIGW-GSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (462)
Q Consensus 108 l~gikkIgIIG~-G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~ 149 (462)
++| |++-|.|. |-+|.++++.|.+. |.+|++..|.
T Consensus 7 ~~~-k~vlVtGas~gIG~~ia~~l~~~------G~~V~~~~r~ 42 (253)
T PRK05867 7 LHG-KRALITGASTGIGKRVALAYVEA------GAQVAIAARH 42 (253)
T ss_pred CCC-CEEEEECCCchHHHHHHHHHHHC------CCEEEEEcCC
Confidence 678 99999997 78999999999998 9988777664
No 495
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=82.72 E-value=13 Score=37.27 Aligned_cols=92 Identities=18% Similarity=0.243 Sum_probs=56.1
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecCCchhHHHHHHcCceec-CCCcCCHhhh----h--ccCCe
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEE-NGTLGDIYET----I--SGSDL 181 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~s~~~A~~~G~~~~-d~~~~~~~ea----v--~~ADv 181 (462)
+| .+|.|+|.|.+|.+.++-++.. |.++++.....+...+.+++.|.... +....+..+. . ...|+
T Consensus 168 ~g-~~vlI~g~g~vg~~~~~lak~~------G~~~v~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~i~~~~~~~~~d~ 240 (345)
T cd08287 168 PG-STVVVVGDGAVGLCAVLAAKRL------GAERIIAMSRHEDRQALAREFGATDIVAERGEEAVARVRELTGGVGADA 240 (345)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCEEEEECCCHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCCCCCE
Confidence 56 8999999999999999888888 88655666655556777787775210 1111111121 1 24788
Q ss_pred EEEeecchhHHHHHHHHHhcCCCCcEEEE
Q 012479 182 VLLLISDAAQADNYEKIFSCMKPNSILGL 210 (462)
Q Consensus 182 ViLavpd~a~~~vl~eI~~~Lk~gaiL~~ 210 (462)
++-++... ..+......++++..++.
T Consensus 241 il~~~g~~---~~~~~~~~~l~~~g~~v~ 266 (345)
T cd08287 241 VLECVGTQ---ESMEQAIAIARPGGRVGY 266 (345)
T ss_pred EEECCCCH---HHHHHHHHhhccCCEEEE
Confidence 88776432 234444445555555443
No 496
>PRK08324 short chain dehydrogenase; Validated
Probab=82.63 E-value=4 Score=46.11 Aligned_cols=40 Identities=23% Similarity=0.222 Sum_probs=33.3
Q ss_pred cccCCCCEEEEEc-ccchHHHHHHHHHHhhhhhcCCcEEEEEecCCch
Q 012479 106 DAFNGINQIGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSR 152 (462)
Q Consensus 106 ~~l~gikkIgIIG-~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~~~~ 152 (462)
..++| ++|.|+| .|-+|.++++.|.+. |.+|++..|+.++
T Consensus 418 ~~l~g-k~vLVTGasggIG~~la~~L~~~------Ga~Vvl~~r~~~~ 458 (681)
T PRK08324 418 KPLAG-KVALVTGAAGGIGKATAKRLAAE------GACVVLADLDEEA 458 (681)
T ss_pred cCCCC-CEEEEecCCCHHHHHHHHHHHHC------cCEEEEEeCCHHH
Confidence 45678 9999999 599999999999998 8888777766443
No 497
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=82.55 E-value=8.1 Score=39.60 Aligned_cols=47 Identities=17% Similarity=0.189 Sum_probs=35.9
Q ss_pred cCCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcCc
Q 012479 108 FNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGF 162 (462)
Q Consensus 108 l~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~ 162 (462)
.+| .+|.|+|.|.+|...++-++.. |. +|++..+ .+..++.+++.|.
T Consensus 183 ~~g-~~vlV~G~g~vG~~~~~~a~~~------G~~~Vi~~~~-~~~~~~~~~~~ga 230 (365)
T cd08277 183 EPG-STVAVFGLGAVGLSAIMGAKIA------GASRIIGVDI-NEDKFEKAKEFGA 230 (365)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEEeC-CHHHHHHHHHcCC
Confidence 356 8999999999999999988888 88 4554444 4455777777776
No 498
>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional
Probab=82.52 E-value=2.7 Score=43.35 Aligned_cols=65 Identities=9% Similarity=0.169 Sum_probs=46.1
Q ss_pred ccCCCCEEEEEcc---cchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHH-cCceecCCCcCCHhhhhccCCe
Q 012479 107 AFNGINQIGVIGW---GSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARA-AGFTEENGTLGDIYETISGSDL 181 (462)
Q Consensus 107 ~l~gikkIgIIG~---G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~-~G~~~~d~~~~~~~eav~~ADv 181 (462)
.++| .||++||= +++..|++..+..- |. ++.+.-...- +..... ..+.. +.+.++++++||+
T Consensus 154 ~l~g-~~va~vGD~~~~rv~~Sl~~~~a~~------g~~~v~~~~P~~~--~p~~~~~~~~~~----~~d~~ea~~~aDv 220 (310)
T PRK13814 154 HWNK-LCVTIIGDIRHSRVANSLMDGLVTM------GVPEIRLVGPSSL--LPDKVGNDSIKK----FTELKPSLLNSDV 220 (310)
T ss_pred CcCC-cEEEEECCCCCCcHHHHHHHHHHHc------CCCEEEEeCCccc--CcCccccceEEE----EcCHHHHhCCCCE
Confidence 4778 99999997 69999999999887 87 7766544321 111111 12432 5788999999999
Q ss_pred EEE
Q 012479 182 VLL 184 (462)
Q Consensus 182 ViL 184 (462)
|..
T Consensus 221 vy~ 223 (310)
T PRK13814 221 IVT 223 (310)
T ss_pred EEE
Confidence 986
No 499
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=82.50 E-value=7.8 Score=39.88 Aligned_cols=47 Identities=23% Similarity=0.308 Sum_probs=36.4
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCc-EEEEEecCCchhHHHHHHcCce
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDI-VVKVGLRKGSRSFAEARAAGFT 163 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~-~Vivg~r~~~~s~~~A~~~G~~ 163 (462)
.| .+|.|+|.|.+|...++-++.. |. +|++. +.+.+..+.+++.|..
T Consensus 185 ~g-~~VlV~G~G~iG~~a~q~Ak~~------G~~~Vi~~-~~~~~~~~~a~~~Ga~ 232 (368)
T TIGR02818 185 EG-DTVAVFGLGGIGLSVIQGARMA------KASRIIAI-DINPAKFELAKKLGAT 232 (368)
T ss_pred CC-CEEEEECCCHHHHHHHHHHHHc------CCCeEEEE-cCCHHHHHHHHHhCCC
Confidence 46 8999999999999999988888 87 56554 4445567788888863
No 500
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.40 E-value=3.7 Score=44.23 Aligned_cols=33 Identities=27% Similarity=0.313 Sum_probs=28.7
Q ss_pred CCCCEEEEEcccchHHHHHHHHHHhhhhhcCCcEEEEEecC
Q 012479 109 NGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRK 149 (462)
Q Consensus 109 ~gikkIgIIG~G~mG~AiA~~Lrds~~~~g~G~~Vivg~r~ 149 (462)
+| ++|.|+|+|.-|.+.++-|+ . |.+|++.+++
T Consensus 5 ~~-~~v~v~G~G~sG~a~~~~L~-~------g~~v~v~D~~ 37 (454)
T PRK01368 5 TK-QKIGVFGLGKTGISVYEELQ-N------KYDVIVYDDL 37 (454)
T ss_pred CC-CEEEEEeecHHHHHHHHHHh-C------CCEEEEECCC
Confidence 46 89999999999999999998 6 8888887744
Done!