RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 012479
(462 letters)
>gnl|CDD|129557 TIGR00465, ilvC, ketol-acid reductoisomerase. This is the second
enzyme in the parallel isoleucine-valine biosynthetic
pathway [Amino acid biosynthesis, Pyruvate family].
Length = 314
Score = 176 bits (449), Expect = 1e-51
Identities = 104/335 (31%), Positives = 162/335 (48%), Gaps = 32/335 (9%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
+ +IG+GSQG AQA NLRDS + V VGLRKG S+ +A GF +G +
Sbjct: 5 TVAIIGYGSQGHAQALNLRDS------GLNVIVGLRKGGASWKKATEDGFK-----VGTV 53
Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIG 231
E I +DL++ L+ D Q + YE I +K LG SHGF ++ + + PK++
Sbjct: 54 EEAIPQADLIMNLLPDEVQHEVYEAEIQPLLKEGKTLGFSHGF---NIHFVQIVPPKDVD 110
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PFT 289
V+ V PKG G VR Y +G G+ + AV QD G A +AL ++ A+G
Sbjct: 111 VVMVAPKGPGTLVREEYKEGF-----GVPTLIAVEQDPTGEAMAIALAYAKAIGGGRAGV 165
Query: 290 FATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKI 349
TT ++E SD+FGE+ +L G + ++++ F E G +LAY TV + +I +
Sbjct: 166 LETTFKEETESDLFGEQAVLCGGLTALIKAGFDTLVEAGYQPELAYFETVHELK-LIVDL 224
Query: 350 ISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFY 409
I G+ + + S + + + +++ G + L
Sbjct: 225 IYEGGITGMRDRISNTAEYGALTRRRIIKEELKPEMQKILKEIQNGEFAKEWAL------ 278
Query: 410 EKE-GLPAF-PMGKID-QTRMWKVGERVRSTRPAG 441
E E G PAF K + + + KVG+ +R+ PAG
Sbjct: 279 ENEAGKPAFNTARKYESEHEIEKVGKELRAMVPAG 313
>gnl|CDD|223137 COG0059, IlvC, Ketol-acid reductoisomerase [Amino acid transport
and metabolism / Coenzyme metabolism].
Length = 338
Score = 176 bits (448), Expect = 3e-51
Identities = 106/345 (30%), Positives = 169/345 (48%), Gaps = 55/345 (15%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
++ +IG+GSQG AQA NLRDS V +GLRKGS S+ +A+ GF + +
Sbjct: 20 KVAIIGYGSQGHAQALNLRDSGLN------VIIGLRKGSSSWKKAKEDGF-----KVYTV 68
Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGF--LLGHLQSMGLDFPKN 229
E +D+V++L+ D Q + YEK I +K + LG +HGF G + PK+
Sbjct: 69 EEAAKRADVVMILLPDEQQKEVYEKEIAPNLKEGAALGFAHGFNIHFGLIVP-----PKD 123
Query: 230 IGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFT 289
+ VI V PKG G VRR Y +G G+ + AVHQD G+A ++AL ++ +G T
Sbjct: 124 VDVIMVAPKGPGHLVRREYKEGF-----GVPALIAVHQDASGKALDIALAYAKGIGG--T 176
Query: 290 FA----TTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGI 345
A TT ++E +D+FGE+ +L G + ++++ F E G +LAY EC+ +
Sbjct: 177 RAGVIETTFKEETETDLFGEQAVLCGGLQALIKAGFETLVEAGYQPELAYF---ECLHEL 233
Query: 346 --ISKIISTQGMLAVYNSFSGEDKKEF------EKAYSASYYPCMEILYECYEDVAAGSE 397
I +I G+ + S S + E+ + A M+ + +D+ +G
Sbjct: 234 KLIVDLIYEGGITNMRYSIS--NTAEYGDYTRGPRIIDAETKEEMK---KVLKDIQSGEF 288
Query: 398 IRSVVL---AGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRP 439
+ +L AGR E + + + KVG+ +R P
Sbjct: 289 AKEWILENQAGRPKLEAL------REETAEHEIEKVGKELRKMMP 327
>gnl|CDD|235491 PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional.
Length = 330
Score = 147 bits (375), Expect = 9e-41
Identities = 83/236 (35%), Positives = 129/236 (54%), Gaps = 31/236 (13%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
++ +IG+GSQG A A NLRDS + V VGLR+GS+S+ +A A GF + +
Sbjct: 19 KVAIIGYGSQGHAHALNLRDSGVD------VVVGLREGSKSWKKAEADGF-----EVLTV 67
Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSMGL-DFPKNI 230
E +D++++L+ D QA+ YE+ I +K + L +HGF + H G P ++
Sbjct: 68 AEAAKWADVIMILLPDEVQAEVYEEEIEPNLKEGAALAFAHGFNI-HF---GQIVPPADV 123
Query: 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTF 290
VI V PKG G VRR Y +G G+ AVHQD G A ++AL ++ +G T
Sbjct: 124 DVIMVAPKGPGHLVRREYEEGG-----GVPCLIAVHQDASGNAKDLALAYAKGIGG--TR 176
Query: 291 A----TTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI 342
A TT ++E +D+FGE+ +L G + ++++ F E G ++AY EC+
Sbjct: 177 AGVIETTFKEETETDLFGEQAVLCGGLTELIKAGFETLVEAGYQPEMAY---FECL 229
>gnl|CDD|116601 pfam07991, IlvN, Acetohydroxy acid isomeroreductase, catalytic
domain. Acetohydroxy acid isomeroreductase catalyzes
the conversion of acetohydroxy acids into dihydroxy
valerates. This reaction is the second in the synthetic
pathway of the essential branched side chain amino acids
valine and isoleucine.
Length = 165
Score = 141 bits (357), Expect = 5e-40
Identities = 67/175 (38%), Positives = 99/175 (56%), Gaps = 20/175 (11%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
+I VIG+GSQG A A NLRDS V VGLR GS+S+ +A+ GF + +
Sbjct: 6 KIAVIGYGSQGHAHALNLRDSGVN------VIVGLRPGSKSWEKAKKDGF-----EVYTV 54
Query: 173 YETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIG 231
E + +D+V++L+ D QA+ YEK I +K + L +HGF ++ + PK++
Sbjct: 55 AEAVKKADVVMILLPDEVQAEVYEKEIAPNLKEGAALAFAHGF---NIHFGQIKPPKDVD 111
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS 286
VI V PKG G VRR Y +G G+ + AVHQD G+A ++AL ++ +G
Sbjct: 112 VIMVAPKGPGHLVRREYEEGG-----GVPALIAVHQDASGKAKDLALAYAKGIGG 161
>gnl|CDD|106361 PRK13403, PRK13403, ketol-acid reductoisomerase; Provisional.
Length = 335
Score = 116 bits (290), Expect = 7e-29
Identities = 106/330 (32%), Positives = 165/330 (50%), Gaps = 36/330 (10%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
+ VIG+GSQG AQAQNLRDS E V VG+R G +SF A+A GF + +
Sbjct: 19 VAVIGYGSQGHAQAQNLRDSGVE------VVVGVRPG-KSFEVAKADGFE-----VMSVS 66
Query: 174 ETISGSDLVLLLISDAAQADNYE-KIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGV 232
E + + +V +L+ D QA Y+ ++ ++ +L SHGF + Q ++ P + V
Sbjct: 67 EAVRTAQVVQMLLPDEQQAHVYKAEVEENLREGQMLLFSHGFNIHFGQ---INPPSYVDV 123
Query: 233 IAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALG--SPFTF 290
V PK G VRR++ +G G+ + AVHQD G A +VAL ++ +G
Sbjct: 124 AMVAPKSPGHLVRRVFQEGN-----GVPALVAVHQDATGTALHVALAYAKGVGCTRAGVI 178
Query: 291 ATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI--TGIISK 348
TT ++E +D+FGE+ +L G V +V++ F TE G ++AY EC+ +I
Sbjct: 179 ETTFQEETETDLFGEQAVLCGGVTALVKAGFETLTEGGYRPEIAY---FECLHELKLIVD 235
Query: 349 IISTQGMLAVYNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRF 408
++ G+ + +S S D EF + S E E + EI+ A +
Sbjct: 236 LMYEGGLTNMRHSIS--DTAEFGDYVTGSRIVTDETKKEMKRVLT---EIQQGEFAKKWI 290
Query: 409 YEKE-GLPAF-PMGKIDQT-RMWKVGERVR 435
E + G P + M K +Q ++ KVGE +R
Sbjct: 291 LENQAGRPTYNAMKKAEQNHQLEKVGEELR 320
>gnl|CDD|235368 PRK05225, PRK05225, ketol-acid reductoisomerase; Validated.
Length = 487
Score = 83.1 bits (206), Expect = 4e-17
Identities = 69/206 (33%), Positives = 97/206 (47%), Gaps = 26/206 (12%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAA--GFTEENGTLGD 171
I ++G G+QG Q N+RDS + + LRK + AE RA+ TE +G
Sbjct: 39 IVIVGCGAQGLNQGLNMRDS------GLDISYALRKEA--IAEKRASWRKATENGFKVGT 90
Query: 172 IYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIG 231
E I +DLV+ L D +D + MK + LG SHGF ++ +G K+I
Sbjct: 91 YEELIPQADLVINLTPDKQHSDVVRAVQPLMKQGAALGYSHGF---NIVEVGEQIRKDIT 147
Query: 232 VIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVD--GRATNVALGWSVALGSPFT 289
V+ V PK G VR Y + G G+ + AVH + D G +A W+ A G
Sbjct: 148 VVMVAPKCPGTEVREEYKR-----GFGVPTLIAVHPENDPKGEGMAIAKAWAAATGG--H 200
Query: 290 FATTLEQ----EYRSDIFGERGILLG 311
A LE E +SD+ GE+ IL G
Sbjct: 201 RAGVLESSFVAEVKSDLMGEQTILCG 226
>gnl|CDD|216510 pfam01450, IlvC, Acetohydroxy acid isomeroreductase, catalytic
domain. Acetohydroxy acid isomeroreductase catalyzes
the conversion of acetohydroxy acids into dihydroxy
valerates. This reaction is the second in the synthetic
pathway of the essential branched side chain amino acids
valine and isoleucine.
Length = 146
Score = 66.9 bits (164), Expect = 3e-13
Identities = 37/155 (23%), Positives = 71/155 (45%), Gaps = 21/155 (13%)
Query: 294 LEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQ 353
E+E SD+FGE+ +L G + G++++ F E G + ++AY T+ +I +I
Sbjct: 1 FEEETESDLFGEQAVLCGGLQGLIKAGFETLVEAGYSPEIAYFETLH-ELKLIVDLIYEG 59
Query: 354 GMLAVYNSFSGEDKKEF------EKAYSASYYPCMEILYECYEDVAAGSEIRSVVL---A 404
G+ + +S S E+ + + + M+ E +D+ G+ + +L A
Sbjct: 60 GLSGMRDSIS--TTAEYGAYLWGPRIITEATKILMK---EILKDIQNGTFAKEWLLENSA 114
Query: 405 GRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRP 439
G KE +I + + KVG+++R P
Sbjct: 115 GNPRLNKE------RKEIREHPIEKVGKKLRKLMP 143
>gnl|CDD|224417 COG1500, COG1500, Predicted exosome subunit [Translation, ribosomal
structure and biogenesis].
Length = 234
Score = 32.7 bits (75), Expect = 0.27
Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 12/76 (15%)
Query: 135 AEAKSDIVVKVGLRKGSRSFAEA------------RAAGFTEENGTLGDIYETISGSDLV 182
AE + V+K F A +A G + G + GS +
Sbjct: 142 AEEQVQEVLKALRPIIPIRFERAKVAVKIPVEYAGKAYGLLRKFGEIKKEEWQEDGSWIC 201
Query: 183 LLLISDAAQADNYEKI 198
+L I Q + YE +
Sbjct: 202 VLEIPAGNQDEFYELL 217
>gnl|CDD|237820 PRK14806, PRK14806, bifunctional cyclohexadienyl dehydrogenase/
3-phosphoshikimate 1-carboxyvinyltransferase;
Provisional.
Length = 735
Score = 32.3 bits (74), Expect = 0.55
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 13/95 (13%)
Query: 111 INQIGVIGWGSQGPAQAQNLRDS-LAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTL 169
++ VIG G G + A+ LR+ LA VV V R S A + G +
Sbjct: 3 FGRVVVIGLGLIGGSFAKALRERGLARE----VVAVDRRAKSL--ELAVSLGVIDRGEE- 55
Query: 170 GDIYETISGSDLVLLLISDAAQADNYEKIFSCMKP 204
D+ E +SG+D+++L A EK+ + +KP
Sbjct: 56 -DLAEAVSGADVIVL----AVPVLAMEKVLADLKP 85
>gnl|CDD|220610 pfam10165, Ric8, Guanine nucleotide exchange factor synembryn.
Ric8 is involved in the EGL-30 neurotransmitter
signalling pathway. It is a guanine nucleotide exchange
factor that regulates neurotransmitter secretion.
Length = 439
Score = 31.5 bits (72), Expect = 0.90
Identities = 21/86 (24%), Positives = 32/86 (37%), Gaps = 11/86 (12%)
Query: 18 SPSSETLKEALKHLNLASFSSTAKSLRALKTTTGRGSALSAWMASET---------ALKT 68
SPS + +EALK L A F S R L G G L+ + + +
Sbjct: 40 SPSEDVRREALKCLCNALFLSPK--ARQLFVDLGLGEGLAERLKEDEETPSDDEFFDSRL 97
Query: 69 PFLLDFETSVFKKDMISLADRDEYIV 94
FLL + +K +I ++
Sbjct: 98 LFLLTALRTDDRKQLIDEHHGLSLLL 123
>gnl|CDD|224105 COG1184, GCD2, Translation initiation factor 2B subunit, eIF-2B
alpha/beta/delta family [Translation, ribosomal
structure and biogenesis].
Length = 301
Score = 31.2 bits (71), Expect = 1.1
Identities = 35/165 (21%), Positives = 60/165 (36%), Gaps = 20/165 (12%)
Query: 35 SFSSTAKSLRALKTTTGRGSALSAWMASETALKTPFLLDFETSVFKKDMISLADRDEYIV 94
TA+ L++++ RG++ W+A A + E ++ + + I
Sbjct: 5 EVDETAEKLKSMEI---RGAS---WIA-IAAAEA-----LEILASDSQAPTVEELIDAIR 52
Query: 95 RGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSF 154
L P A + N I + +N R SL +A + + +V
Sbjct: 53 ELSETLVKARPTAVSLGNLIRFVL-RDSSGGDKENRRQSLIKAAQEFIDRVEK------- 104
Query: 155 AEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIF 199
A+ R A E GD+ T S S VL ++ AA K+
Sbjct: 105 AKERIAEIGAERIHDGDVILTHSFSKTVLEVLKTAADRGKRFKVI 149
>gnl|CDD|181857 PRK09437, bcp, thioredoxin-dependent thiol peroxidase; Reviewed.
Length = 154
Score = 29.9 bits (68), Expect = 1.3
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 126 QAQNLRDSLAEAKSDIVVKVGL-----RKGSRSFAEARAAGFT 163
QA LRD++ E K VV +G+ K SR FAE FT
Sbjct: 49 QACGLRDNMDELKKAGVVVLGISTDKPEKLSR-FAEKELLNFT 90
>gnl|CDD|202773 pfam03807, F420_oxidored, NADP oxidoreductase coenzyme
F420-dependent.
Length = 93
Score = 27.9 bits (63), Expect = 3.7
Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
IG+IG G+ G A A+ LA A ++V+ R ++ A A G T
Sbjct: 2 IGIIGAGNMGEALARG----LAAAGHEVVI-ANSRNPEKAAALAEELGV---KATAVSNE 53
Query: 174 ETISGSDLVLLLI 186
E + +D+V L +
Sbjct: 54 EAVEEADVVFLAV 66
>gnl|CDD|239504 cd03411, Ferrochelatase_N, Ferrochelatase, N-terminal domain:
Ferrochelatase (protoheme ferrolyase or HemH) is the
terminal enzyme of the heme biosynthetic pathway. It
catalyzes the insertion of ferrous iron into the
protoporphyrin IX ring yielding protoheme. This enzyme
is ubiquitous in nature and widely distributed in
bacteria and eukaryotes. Recently, some archaeal members
have been identified. The oligomeric state of these
enzymes varies depending on the presence of a
dimerization motif at the C-terminus.
Length = 159
Score = 28.3 bits (64), Expect = 4.9
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 12/58 (20%)
Query: 117 IGWGSQGP------AQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEA----RAAGFTE 164
IG GS P AQA+ L +L E D+ V + +R G S EA +A G
Sbjct: 60 IGGGS--PLNEITRAQAEALEKALDERGIDVKVYLAMRYGPPSIEEALEELKADGVDR 115
>gnl|CDD|162262 TIGR01229, rocF_arginase, arginase. This model helps resolve
arginases from known and putative agmatinases,
formiminoglutamases, and other related proteins of
unknown specifity. The pathway from arginine to the
polyamine putrescine may procede by hydrolysis to remove
urea (arginase) followed by decarboxylation (ornithine
decarboxylase), or by decarboxylation first (arginine
decarboxylase) followed by removal of urea (agmatinase).
Length = 300
Score = 28.9 bits (65), Expect = 5.5
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 398 IRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLH 447
+RSV R+ ++ G+ F M +ID+ + KV E A D GP+H
Sbjct: 173 LRSVDPGERKILKELGIKVFSMHEIDELGIGKVVEETLEYLKAED-GPIH 221
>gnl|CDD|227502 COG5175, MOT2, Transcriptional repressor [Transcription].
Length = 480
Score = 28.9 bits (64), Expect = 6.7
Identities = 15/71 (21%), Positives = 29/71 (40%)
Query: 3 AATLPFSRPIPKFSPSPSSETLKEALKHLNLASFSSTAKSLRALKTTTGRGSALSAWMAS 62
+T + + F+ +PS ++ KH F + K L T SA +++
Sbjct: 261 TSTARYDTDLLNFTGTPSPAAMEAQFKHKTSRVFKAPDKILFPPLDFTNTQSATPVTLSN 320
Query: 63 ETALKTPFLLD 73
+++ P L D
Sbjct: 321 SSSINLPTLND 331
>gnl|CDD|224995 COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related
beta-hydroxyacid dehydrogenases [Lipid metabolism].
Length = 286
Score = 28.3 bits (64), Expect = 7.3
Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 14/99 (14%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
I IG G G A NL + E V V R ++ AAG T
Sbjct: 3 IAFIGLGIMGSPMAANLLKAGHE------VTVYNRTPEKAAELLAAAGATVA----ASPA 52
Query: 174 ETISGSDLVLLLISDAAQADN----YEKIFSCMKPNSIL 208
E + +D+V+ ++ D A + +KP +I+
Sbjct: 53 EAAAEADVVITMLPDDAAVRAVLFGENGLLEGLKPGAIV 91
>gnl|CDD|233769 TIGR02187, GlrX_arch, Glutaredoxin-like domain protein. This
family of archaeal proteins contains a C-terminal domain
with homology to bacterial and eukaryotic glutaredoxins,
including a CPYC motif. There is an N-terminal domain
which has even more distant homology to glutaredoxins.
The name "glutaredoxin" may be inappropriate in the
sense of working in tandem with glutathione and
glutathione reductase which may not be present in the
archaea. The overall domain structure appears to be
related to bacterial alkylhydroperoxide reductases, but
the homology may be distant enough that the function of
this family is wholly different.
Length = 215
Score = 28.2 bits (63), Expect = 7.5
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
Query: 356 LAVYNSFSGEDKKEFEKAYSASYYPCMEILYEC------YEDVAAGSEIRSVV 402
L +Y+ + EDK+E EK Y P IL E Y + AG E +++
Sbjct: 56 LEIYDFDTPEDKEEAEK-YGVERVPTTIILEEGKDGGIRYTGIPAGYEFAALI 107
>gnl|CDD|219994 pfam08735, DUF1786, Putative pyruvate format-lyase activating
enzyme (DUF1786). This family is annotated as pyruvate
formate-lyase activating enzyme (EC:1.97.1.4) in
UniProt. It is not clear where this annotation comes
from.
Length = 252
Score = 28.0 bits (63), Expect = 8.7
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 213 GFLLGHLQSMGLDFPKNIGVIAVCPKGMGP 242
L L S G+DFP +I +AV G P
Sbjct: 63 EALREALASFGVDFPPDIVAVAVQDHGFAP 92
>gnl|CDD|176450 cd08663, DAP_dppA_1, Peptidase M55, D-aminopeptidase
dipeptide-binding protein family. M55 Peptidase,
D-Aminopeptidase dipeptide-binding protein (dppA; DAP
dppA; EC 3.4.11.-) domain: Peptide transport systems are
found in many bacterial species and generally function
to accumulate intact peptides in the cell, where they
are hydrolyzed. The dipeptide-binding protein (dppA) of
Bacillus subtilis belongs to the dipeptide ABC transport
(dpp) operon expressed early during sporulation. It is a
binuclear zinc-dependent, D-specific aminopeptidase. The
biologically active enzyme is a homodecamer with active
sites buried in its channel. These
self-compartmentalizing proteases are characterized by a
SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the
preferred substrates. Bacillus subtilis dppA is thought
to function as an adaptation to nutrient deficiency;
hydrolysis of its substrate releases D-Ala which can be
used subsequently as metabolic fuel. This family also
contains a number of uncharacterized putative
peptidases.
Length = 266
Score = 28.3 bits (64), Expect = 8.8
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 240 MGPSVRRLYVQGKEINGAGINSSFAVHQDV 269
G +VR + + G+E+ G+N++ A V
Sbjct: 119 SGGAVRDVRLNGREVGETGLNAAVAGEYGV 148
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.390
Gapped
Lambda K H
0.267 0.0728 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,799,447
Number of extensions: 2371560
Number of successful extensions: 2135
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2102
Number of HSP's successfully gapped: 30
Length of query: 462
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 362
Effective length of database: 6,502,202
Effective search space: 2353797124
Effective search space used: 2353797124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.3 bits)