RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 012479
(462 letters)
>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein);
rossmann fold, NADPH, knotted protein, branched-chain
amino biosynthesis; 1.55A {Oryza sativa japonica group}
PDB: 3fr8_A* 1qmg_A* 1yve_I*
Length = 525
Score = 536 bits (1383), Expect = 0.0
Identities = 342/391 (87%), Positives = 367/391 (93%)
Query: 72 LDFETSVFKKDMISLADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQGPAQAQNLR 131
LDF+TSVF K+ +SLA +EYIVRGGR+LF LLP+AF GI QIGVIGWGSQGPAQAQNLR
Sbjct: 15 LDFDTSVFNKEKVSLAGHEEYIVRGGRNLFPLLPEAFKGIKQIGVIGWGSQGPAQAQNLR 74
Query: 132 DSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQ 191
DSLAEAKSDIVVK+GLRKGS+SF EARAAGFTEE+GTLGDI+ET+SGSDLVLLLISDAAQ
Sbjct: 75 DSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLISDAAQ 134
Query: 192 ADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPKNIGVIAVCPKGMGPSVRRLYVQG 251
ADNYEKIFS MKPNSILGLSHGFLLGHLQS GLDFPKNI VIAVCPKGMGPSVRRLYVQG
Sbjct: 135 ADNYEKIFSHMKPNSILGLSHGFLLGHLQSAGLDFPKNISVIAVCPKGMGPSVRRLYVQG 194
Query: 252 KEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDIFGERGILLG 311
KEINGAGINSSFAVHQDVDGRAT+VALGWSVALGSPFTFATTLEQEY+SDIFGERGILLG
Sbjct: 195 KEINGAGINSSFAVHQDVDGRATDVALGWSVALGSPFTFATTLEQEYKSDIFGERGILLG 254
Query: 312 AVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAVYNSFSGEDKKEFE 371
AVHGIVE+LFRR+TE GM+E++AYKNTVE ITGIISK IS +GML VYNS + E KKEF
Sbjct: 255 AVHGIVEALFRRYTEQGMDEEMAYKNTVEGITGIISKTISKKGMLEVYNSLTEEGKKEFN 314
Query: 372 KAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVG 431
KAYSAS+YPCM+ILYECYEDVA+GSEIRSVVLAGRRFYEKEGLPAFPMG IDQTRMWKVG
Sbjct: 315 KAYSASFYPCMDILYECYEDVASGSEIRSVVLAGRRFYEKEGLPAFPMGNIDQTRMWKVG 374
Query: 432 ERVRSTRPAGDLGPLHPFTAGVYAALMMAQV 462
E+VRSTRP DLGPLHPFTAGVY ALMMAQ+
Sbjct: 375 EKVRSTRPENDLGPLHPFTAGVYVALMMAQI 405
Score = 70.6 bits (173), Expect = 3e-13
Identities = 15/141 (10%), Positives = 41/141 (29%), Gaps = 4/141 (2%)
Query: 299 RSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECITGIISKIISTQGMLAV 358
+D+ G ++ + + G + +V ++ + +G+ +
Sbjct: 383 ENDLGPLHPFTAGVYVALMMAQIEVLRKKGHSYSEIINESVIESVDSLNPFMHARGVAFM 442
Query: 359 YNSFSGEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFP 418
++ S + K Y + + + V + I +++ G
Sbjct: 443 VDNCSTTARLGSRKWAPRFDYILTQ---QAFVTVDKDAPINQDLISNFMSDPVHGAIE-V 498
Query: 419 MGKIDQTRMWKVGERVRSTRP 439
++ T V RP
Sbjct: 499 CAELRPTVDISVPANADFVRP 519
>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot,
C-terminal alpha-helical domain oxidoreductase; 2.00A
{Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6
Length = 338
Score = 163 bits (414), Expect = 1e-46
Identities = 78/257 (30%), Positives = 126/257 (49%), Gaps = 31/257 (12%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
+ +IG+GSQG A A NL+DS + V VGLR GS + A+A A G + D+
Sbjct: 19 VAIIGYGSQGHAHACNLKDSGVD------VTVGLRSGSATVAKAEAHGL-----KVADVK 67
Query: 174 ETISGSDLVLLLISDAAQADNYEK-IFSCMKPNSILGLSHGF--LLGHLQSMGLDFPKNI 230
++ +D+V++L D Q Y++ I +K + L +HGF + ++
Sbjct: 68 TAVAAADVVMILTPDEFQGRLYKEEIEPNLKKGATLAFAHGFSIHYNQVVP-----RADL 122
Query: 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGS--PF 288
VI + PK G +VR +V+G GI A++QD G A NVAL ++ +G
Sbjct: 123 DVIMIAPKAPGHTVRSEFVKGG-----GIPDLIAIYQDASGNAKNVALSYACGVGGGRTG 177
Query: 289 TFATTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI--TGII 346
TT + E +D+FGE+ +L G +V++ F E G ++AY EC+ +I
Sbjct: 178 IIETTFKDETETDLFGEQAVLCGGCVELVKAGFETLVEAGYAPEMAY---FECLHELKLI 234
Query: 347 SKIISTQGMLAVYNSFS 363
++ G+ + S S
Sbjct: 235 VDLMYEGGIANMNYSIS 251
>1yrl_A Ketol-acid reductoisomerase; branched-chain amino acid
biosynthesis, knotted protein, oxidoreductase; 2.60A
{Escherichia coli}
Length = 491
Score = 155 bits (394), Expect = 2e-42
Identities = 71/248 (28%), Positives = 106/248 (42%), Gaps = 37/248 (14%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGS-----RSFAEARAAGFTEENGT 168
+ ++G G+QG Q N+RDS + + LRK + S+ +A GF
Sbjct: 40 VVIVGCGAQGLNQGLNMRDSGLD------ISYALRKEAIAEKRASWRKATENGF-----K 88
Query: 169 LGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFPK 228
+G E I +DLV+ L D +D + MK + LG SHGF ++ +G K
Sbjct: 89 VGTYEELIPQADLVINLTPDKQHSDVVRTVQPLMKDGAALGYSHGF---NIVEVGEQIRK 145
Query: 229 NIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVH--QDVDGRATNVALGWSVALGS 286
+I V+ V PK G VR Y +G G+ + AVH D G +A W+ A G
Sbjct: 146 DITVVMVAPKCPGTEVREEYKRGF-----GVPTLIAVHPENDPKGEGMAIAKAWAAATGG 200
Query: 287 PFTFA----TTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI 342
A ++ E +SD+ GE+ IL G + F + E G + A K
Sbjct: 201 --HRAGVLESSFVAEVKSDLMGEQTILCGMLQAGSLLCFDKLVEEGTDPAYAEK---LIQ 255
Query: 343 TGIISKII 350
G + I
Sbjct: 256 FGW--ETI 261
Score = 30.0 bits (68), Expect = 1.9
Identities = 13/74 (17%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Query: 292 TTLEQEYRSDIFGERGILLGAVHGIVESLFRRFTENGMNEDLAYKNTVECI--TGIISKI 349
+ + F + +++ V VE F ++G+ E+ AY E + +I+
Sbjct: 344 QYEGKIGEQEYFDKGVLMIAMVKAGVELAFETMVDSGIIEESAYY---ESLHELPLIANT 400
Query: 350 ISTQGMLAVYNSFS 363
I+ + + + S
Sbjct: 401 IARKRLYEMNVVIS 414
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Length = 286
Score = 55.1 bits (132), Expect = 1e-08
Identities = 26/173 (15%), Positives = 49/173 (28%), Gaps = 20/173 (11%)
Query: 114 IGVIG-WGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
+ ++G G G + + DS + + G L D
Sbjct: 14 VAILGAGGKMGARITRKIHDSAHHL-------AAIEIAPEGRDRLQGMGIP-----LTDG 61
Query: 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGF--LLGHLQSMGLDFPKNI 230
I +D+V+L + D E I ++P +I+ + G + +I
Sbjct: 62 DGWIDEADVVVLALPDNIIEKVAEDIVPRVRPGTIVLILDAAAPYAGVMPE-----RADI 116
Query: 231 GVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVA 283
P + GI V + G + A+G +
Sbjct: 117 TYFIGHPCHPPLFNDETDPAARTDYHGGIAKQAIVCALMQGPEEHYAIGADIC 169
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.1 bits (127), Expect = 2e-07
Identities = 81/452 (17%), Positives = 141/452 (31%), Gaps = 145/452 (32%)
Query: 3 AATLPFSRPIPKFSPSPSSETLK---EALKHLNLASFSSTAKS--LRALKTTT------- 50
AA L + E +K A F + S RA+
Sbjct: 105 AAKLLQENDTT---LVKTKELIKNYITARIMAK-RPFDKKSNSALFRAVGEGNAQLVAIF 160
Query: 51 -GRGSALSAWMASETALKTPFLLD-FETS-VFKKDMI-SLADRDEYIVRGGRDLFNLLPD 106
G+G+ + E L D ++T V D+I A+ ++R D +
Sbjct: 161 GGQGNTDDYF--EE-------LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQ 211
Query: 107 AFNGINQIGVIGWGSQGPAQAQNLRDSLAEAK-SDIVVKVGLRKGSRSFAEARAAGFTEE 165
N ++ W + P+ + +D L S +G+ + + A+ GFT
Sbjct: 212 GLN------ILEWL-ENPSNTPD-KDYLLSIPIS--CPLIGVIQLAHYVVTAKLLGFTP- 260
Query: 166 NGTLGDIYETISG--SDLVL-LLISDAAQADNYEKIFSCMKPNSILGLSHGFLLG---HL 219
G L + +G LV + I A+ D++E F + ++ F +G +
Sbjct: 261 -GELRSYLKGATGHSQGLVTAVAI---AETDSWESFFV----SVRKAITVLFFIGVRCYE 312
Query: 220 QSMGLDFPKNIGVIAVCPK--------GMG-PS----VRRL---YVQGKEINGAGINSSF 263
+P ++ P G PS + L VQ + NS
Sbjct: 313 A-----YP----NTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQ-DYV--NKTNSHL 360
Query: 264 AVHQDV-----DGRATNVALGWSVALGSP---FTFATTLEQEY------RSDI-FGERGI 308
+ V +G V V+ G P + TL + +S I F ER +
Sbjct: 361 PAGKQVEISLVNGAKNLV-----VS-GPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKL 414
Query: 309 -----------------LLGAVHGIVESLFRR-FTENGMNEDLAYKNTVECITGIISKII 350
L+ A I + L + + N +D+
Sbjct: 415 KFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNA--KDIQ---------------- 456
Query: 351 STQGMLAVYNSFSGEDKKEFEKAYSASYYPCM 382
+ VY++F G D + + S C+
Sbjct: 457 -----IPVYDTFDGSDLRVLSGSISERIVDCI 483
Score = 45.8 bits (108), Expect = 3e-05
Identities = 67/455 (14%), Positives = 123/455 (27%), Gaps = 159/455 (34%)
Query: 3 AATLPFSRPIPKFSPSP---------------------SSETLKEALKHL------NLAS 35
A + RP K S S + + +E L+ L +
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE-LRDLYQTYHVLVGD 186
Query: 36 F-SSTAKSLRALKTTT-------GRGSALSAWMAS-ETALKTPFLLDFETSVFKKDMISL 86
+A++L L TT +G + W+ + +LL S +I +
Sbjct: 187 LIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC---PLIGV 243
Query: 87 ADRDEYIVRGGRDLFNLLPDAFNGINQIGVIGWGSQG------PAQAQNLRDSLAEAKSD 140
Y+V L P + G G QG A+ + +S +
Sbjct: 244 IQLAHYVV--TAKLLGFTPGELRSYLK-GATGHS-QGLVTAVAIAETDS-WESFFVS-VR 297
Query: 141 IVVKVGLRKGSRSFAEARAAGFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFS 200
+ V G R YE + L ++ D+ +N E + S
Sbjct: 298 KAITVLFFIGVRC-------------------YEAYPNTSLPPSILEDSL--ENNEGVPS 336
Query: 201 CMKPNSILGLSHGFLLGHLQSMGLDFPKN----IGVI-----AVC---PK---GMGPSVR 245
M SI L+ + ++ P I ++ V P+ G+ ++R
Sbjct: 337 PML--SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLR 394
Query: 246 RLYVQ-GKEINGAG--------------INSSFAVH--------QDVDGRATNVALGWSV 282
+ G + + + S F H ++ + ++
Sbjct: 395 KAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF--HSHLLVPASDLINKDLVKNNVSFNA 452
Query: 283 A-LGSPFTFATT----LEQEYRSDI--------------------FGERGILL---GAVH 314
+ P + T L + I F IL G
Sbjct: 453 KDIQIP-VYDTFDGSDL-RVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGAS 510
Query: 315 GIVESLFRRFTE-------------NGMNEDLAYK 336
G+ L R + ++D +K
Sbjct: 511 GL-GVLTHRNKDGTGVRVIVAGTLDINPDDDYGFK 544
Score = 43.1 bits (101), Expect = 2e-04
Identities = 55/322 (17%), Positives = 93/322 (28%), Gaps = 125/322 (38%)
Query: 120 GSQGPAQAQNLRDSLAEAK------------------SDIV--------VKVGLRKGSR- 152
GSQ +L + A+ DIV + G KG R
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI 1684
Query: 153 ----------SFAEARAAG---FTEENGTLGDIYETISGSDLVL----------LLISDA 189
+ + + F E N T +L L+ A
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIFKEINEHSTSY--TFRSEKGLLSATQFTQPALTLMEKA 1742
Query: 190 AQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMG----LDFPKNIGVIAVCPKG-MGPS- 243
F +K ++ F GH S+G L M
Sbjct: 1743 --------AFEDLKSKGLIPADATF-AGH--SLGEYAAL----------ASLADVMSIES 1781
Query: 244 -VRRLYVQGKEINGAGINSSFAVHQDVDGRATNVALGWSVALGSPFTFATTLEQEYRSDI 302
V ++ +G + AV +D GR +N + +A+ P A + QE
Sbjct: 1782 LVEVVFYRGMTMQ-------VAVPRDELGR-SNYGM---IAIN-PGRVAASFSQE----- 1824
Query: 303 FGERGILLGAVHGIVESLFRRFTE-------NGMNE------DLAYKNTVECITGIISKI 349
A+ +VE + +R N N+ DL ++ +T ++
Sbjct: 1825 ---------ALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLR---ALDTVTNVL-NF 1871
Query: 350 ISTQG--MLAVYNSFSGEDKKE 369
I Q ++ + S S E+ +
Sbjct: 1872 IKLQKIDIIELQKSLSLEEVEG 1893
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 46.4 bits (109), Expect = 2e-05
Identities = 35/286 (12%), Positives = 83/286 (29%), Gaps = 83/286 (29%)
Query: 9 SRPIPKFS-PSPSS-ETLKEALKHLNLASF------SSTAKSLRALKTTTGRGSALSAWM 60
++ K++ L++AL L A + K+ W+
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT----------------WV 166
Query: 61 ASETALKTPFLLDFETSVFKKDMISLA--DRDEYIVRGGRDLF-----NLLPDAFNGINQ 113
A + L + +F ++L + E ++ + L N + + N
Sbjct: 167 ALDVCLSYKVQCKMDFKIF---WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 114 IGVIGWGSQGPA---QAQNLRDSL-----------AEA---KSDIVV---------KVGL 147
I +++ + L A I++ +
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 148 RKGSRSFAEARAAGFTEE----------NGTLGDI-YETISGSDLVLLLIS-----DAAQ 191
+ + + T + + D+ E ++ + L +I+ A
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 192 ADNYEKIFSCMKPNSILGLSHGFL-----LGHLQSMGLDFPKNIGV 232
DN++ + +C K +I+ S L + + FP + +
Sbjct: 344 WDNWKHV-NCDKLTTIIESSLNVLEPAEYRKMFDRLSV-FPPSAHI 387
>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas,
oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten
maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*
Length = 404
Score = 42.9 bits (100), Expect = 2e-04
Identities = 21/165 (12%), Positives = 49/165 (29%), Gaps = 14/165 (8%)
Query: 114 IGVIGWGSQGPAQAQNL-------------RDSLAEAKSDIVVKVGLRKGSRSFAEARAA 160
+ V G G+ + AE + + L +
Sbjct: 5 VCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTE 64
Query: 161 GFTEENGTLGDIYETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQ 220
+ D ISG+D+V+L + A ++ + ++ ++++ Q
Sbjct: 65 VKSRPKVITKDPEIAISGADVVILTVPAFAHEGYFQAMAPYVQDSALIVGLPSQAGFEFQ 124
Query: 221 SMGLDFPKNIGVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAV 265
+ +++ P R+ G+++ G S A
Sbjct: 125 CRDI-LGDKAAAVSMMSFETLPWACRIKEFGRKVEVLGTKSVLAA 168
>4ezb_A Uncharacterized conserved protein; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; 2.10A {Sinorhizobium meliloti}
Length = 317
Score = 34.5 bits (79), Expect = 0.061
Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 4/96 (4%)
Query: 113 QIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDI 172
I IG+G + A L + + LR + + A A E D
Sbjct: 26 TIAFIGFGEAAQSIAGGLGG----RNAARLAAYDLRFNDPAASGALRARAAELGVEPLDD 81
Query: 173 YETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIL 208
I+ +D+VL L+ AA + ++
Sbjct: 82 VAGIACADVVLSLVVGAATKAVAASAAPHLSDEAVF 117
>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann
fold, transport, cell cycle, transferrin, flavoprotein,
alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB:
2vq3_A*
Length = 215
Score = 31.9 bits (72), Expect = 0.31
Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 12/80 (15%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
+G++G G + A L S V V GSR+ R A +
Sbjct: 31 VGILGSGDFARSLATRL------VGSGFKVVV----GSRNP--KRTARLFPSAAQVTFQE 78
Query: 174 ETISGSDLVLLLISDAAQAD 193
E +S +++ + + +
Sbjct: 79 EAVSSPEVIFVAVFREHYSS 98
>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural
genomics, PSI-2, protein structure initiative; HET: NDP;
3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6
Length = 276
Score = 31.7 bits (71), Expect = 0.45
Identities = 13/114 (11%), Positives = 29/114 (25%), Gaps = 11/114 (9%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
+ +G G+ + L+D + + SRS AR G +
Sbjct: 5 LNFVGTGTLTRFFLECLKDRYE------IGYIL----SRSIDRARNLA-EVYGGKAATLE 53
Query: 174 ETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHGFLLGHLQSMGLDFP 227
+ + +V +++ D + + P
Sbjct: 54 KHPELNGVVFVIVPDRYIKTVANHLNLGDAVLVHCSGFLSSEIFKKSGRASIHP 107
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.63
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 4/28 (14%)
Query: 25 KEALKHL--NLASFS-STAKSLRALKTT 49
K+ALK L +L ++ +A +L A+K T
Sbjct: 19 KQALKKLQASLKLYADDSAPAL-AIKAT 45
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural
genomics, PSI-biology, midwest center for structu
genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Length = 312
Score = 30.6 bits (69), Expect = 0.90
Identities = 14/95 (14%), Positives = 31/95 (32%), Gaps = 8/95 (8%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
+G IG+G A A L +A + + A G + +
Sbjct: 27 LGFIGFGEAASAIASGL----RQAGAIDMAAYDAASAESWRPRAEELGVS----CKASVA 78
Query: 174 ETISGSDLVLLLISDAAQADNYEKIFSCMKPNSIL 208
E D++ L++ A + ++ + ++
Sbjct: 79 EVAGECDVIFSLVTAQAALEVAQQAGPHLCEGALY 113
>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2,
protein structure initiative, M center for structural
genomics, MCSG; 2.19A {Bacteroides fragilis}
Length = 266
Score = 30.1 bits (67), Expect = 1.4
Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 9/100 (9%)
Query: 114 IGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKVGLRKGSRSFAEARAAGFTEENGTLGDIY 173
I +IG G+ A+ L K +V+V SR+ AR E D+
Sbjct: 13 IVLIGAGNLATNLAKALY-----RKGFRIVQVY----SRTEESARELAQKVEAEYTTDLA 63
Query: 174 ETISGSDLVLLLISDAAQADNYEKIFSCMKPNSILGLSHG 213
E + L ++ + D+A A+ + I + +++ + G
Sbjct: 64 EVNPYAKLYIVSLKDSAFAELLQGIVEGKREEALMVHTAG 103
>1pq3_A Arginase II, mitochondrial precursor; biosynthetic protein,
hydrolase; HET: S2C; 2.70A {Homo sapiens} SCOP: c.42.1.1
Length = 306
Score = 29.5 bits (67), Expect = 2.0
Identities = 12/50 (24%), Positives = 18/50 (36%)
Query: 398 IRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLH 447
+R V + + F M ID+ + KV ER P+H
Sbjct: 175 LRDVDPPEHFILKNYDIQYFSMRDIDRLGIQKVMERTFDLLIGKRQRPIH 224
>2aeb_A Arginase 1; hydrolase, binuclear manganese cluster, boronic acid
inhibit perfectly twinned crystal; HET: ABH; 1.29A {Homo
sapiens} SCOP: c.42.1.1 PDB: 1wva_A* 2pha_A 2pho_A
2pll_A* 2zav_A 3dj8_A* 3f80_A* 3gmz_A 3gn0_A* 3kv2_A*
3lp4_A* 3lp7_A* 3mfv_A* 3mfw_A* 3mjl_A 3sjt_A* 3skk_A*
3tf3_A 3th7_A 3the_A* ...
Length = 322
Score = 29.2 bits (66), Expect = 3.2
Identities = 12/50 (24%), Positives = 20/50 (40%)
Query: 398 IRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLH 447
+R V + G+ F M ++D+ + KV E S P+H
Sbjct: 179 LRDVDPGEHYILKTLGIKYFSMTEVDRLGIGKVMEETLSYLLGRKKRPIH 228
>2ef5_A Arginase; TTHA1496, structural genomic NPPSFA, national project on
protein structural and function analyses; HET: LYS;
2.00A {Thermus thermophilus} PDB: 2ef4_A* 2eiv_A
Length = 290
Score = 28.7 bits (65), Expect = 3.8
Identities = 11/50 (22%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 398 IRSVVLAGRRFYEKEGLPAFPMGKIDQTRMWKVGERVRSTRPAGDLGPLH 447
+RS+ +R ++ G+ + M ++D+ + ++ E V PLH
Sbjct: 167 VRSLDPGEKRLLKEAGVRVYTMHEVDRLGVARIAEEVLKH--LQG-LPLH 213
>3ln6_A Glutathione biosynthesis bifunctional protein GSH; gamma-glutamyl
cysteine ligase domain, ATP-grAsp domain, HYB enzyme;
2.95A {Streptococcus agalactiae serogroup V}
Length = 750
Score = 28.3 bits (63), Expect = 6.0
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 3/57 (5%)
Query: 364 GEDKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMG 420
+ +EKA ++ IL E Y G+E R VL G + A +G
Sbjct: 542 SANLASYEKAIDIAFTEDSAILVEEY---IEGTEYRFFVLEGDCIAVLLRVAANVVG 595
>3ln7_A Glutathione biosynthesis bifunctional protein GSH;
gamma-glutamylcysteine ligase domain, ATP-grAsp domain,
HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Length = 757
Score = 28.0 bits (62), Expect = 9.2
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 366 DKKEFEKAYSASYYPCMEILYECYEDVAAGSEIRSVVLAGRRFYEKEGLPAFPMG 420
++++F KA ++ E++ E Y G+E R VL +PA +G
Sbjct: 550 NREDFAKALEIAFREDKEVMVEDY---LVGTEYRFFVLGDETLAVLLRVPANVVG 601
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.390
Gapped
Lambda K H
0.267 0.0589 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,100,502
Number of extensions: 446092
Number of successful extensions: 1043
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1019
Number of HSP's successfully gapped: 32
Length of query: 462
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 365
Effective length of database: 3,993,456
Effective search space: 1457611440
Effective search space used: 1457611440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.8 bits)