BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012480
(462 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SS9|A Chain A, Crystal Structural Analysis Of Active Site Mutant Q189e Of
Lgtc
Length = 311
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 77/187 (41%), Gaps = 22/187 (11%)
Query: 255 LSLMNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELDLNGKVVGAVVGSSCGDNCC 314
+S+ + R+ + E D +K+L+LD DV+V+ L+ L + DL +GA C
Sbjct: 79 ISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGA----------C 128
Query: 315 PGRKYKDYLNFSYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLK-----LN 369
+ + I ++ ++ A G+ +++L+ WRR +I +W++ +
Sbjct: 129 IDLFVERQEGYKQKIGMADGEYYFNA---GVLLINLKKWRRHDIFKMSCEWVEQYKDVMQ 185
Query: 370 LKSGLELWQXXXXXXXXXXXDGNVHPIDPSWHVAELGQRSLEA----HEETLKSAAVLHF 425
+ L N P + ++ R + T+ AV H+
Sbjct: 186 YQDEDILNGLFKGGVCYANSRFNFMPTNYAFMANRFASRHTDPLYRDRTNTVMPVAVSHY 245
Query: 426 SGPAKPW 432
GPAKPW
Sbjct: 246 CGPAKPW 252
>pdb|1G9R|A Chain A, Crystal Structure Of Galactosyltransferase Lgtc In Complex
With Mn And Udp-2f-Galactose
pdb|1GA8|A Chain A, Crystal Structure Of Galacosyltransferase Lgtc In Complex
With Donor And Acceptor Sugar Analogs
Length = 311
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 77/191 (40%), Gaps = 30/191 (15%)
Query: 255 LSLMNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELDLNGKVVGAVVGSSCGDNCC 314
+S+ + R+ + E D +K+L+LD DV+V+ L+ L + DL +GA +
Sbjct: 79 ISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQ-- 136
Query: 315 PGRKYKDYLNFSYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLKLNLKSGL 374
G K K I ++ ++ A G+ +++L+ WRR +I +W ++
Sbjct: 137 EGYKQK--------IGXADGEYYFNA---GVLLINLKKWRRHDIFKXSSEW----VEQYK 181
Query: 375 ELWQXXXXXXXXXXXDGNV-------------HPIDPSWHVAELGQRSLEAHEETLKSAA 421
++ Q G V + +W + T+ A
Sbjct: 182 DVXQYQDQDILNGLFKGGVCYANSRFNFXPTNYAFXANWFASRHTDPLYRDRTNTVXPVA 241
Query: 422 VLHFSGPAKPW 432
V H+ GPAKPW
Sbjct: 242 VSHYCGPAKPW 252
>pdb|3DM5|A Chain A, Structures Of Srp54 And Srp19, The Two Proteins Assembling
The Ribonucleic Core Of The Signal Recognition Particle
From The Archaeon Pyrococcus Furiosus.
pdb|3DM5|B Chain B, Structures Of Srp54 And Srp19, The Two Proteins Assembling
The Ribonucleic Core Of The Signal Recognition Particle
From The Archaeon Pyrococcus Furiosus
Length = 443
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 38 GGGRIQGTLDSFNELVKEVTSKRQDIKAFAFKTKAMLLKMEHEVQSSRQRESIYWHLAS- 96
G G IQG L+ F EL KEV K +DI+ F + K L M ++++ R+ + L
Sbjct: 295 GLGDIQGLLEKFKELEKEVEIKEEDIERF-LRGKFTLKDMYAQLEAMRKMGPLKQILRMI 353
Query: 97 HGVPKSLHCLCLKLAEE------YAVNAMARSRLPSPEYVSH 132
G+ SL + + EE +++M L +PE +++
Sbjct: 354 PGLGYSLPDDVISIGEERLKKFKVIMDSMTEEELLNPEIINY 395
>pdb|1YR2|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
Length = 741
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 6/46 (13%)
Query: 286 HDL-SSLLELDLNGKVVGAV----VGSSCGDNCCPGRKYKDYLNFS 326
HD S +L DL+GK GAV +GS+ G + PG ++ YL+FS
Sbjct: 382 HDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHA-YLSFS 426
>pdb|1E4G|T Chain T, Ftsa (Atp-Bound Form) From Thermotoga Maritima
Length = 419
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 219 EAHRLIWSH---YYKNLKHEDFEYEGENRRCLEVLSPSCLSLMNHLRI 263
E+ RLI +H Y +LK E+ +Y G + ++ + LS++ H R+
Sbjct: 255 ESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHARL 302
>pdb|1E4F|T Chain T, Ftsa (Apo Form) From Thermotoga Maritima
pdb|4A2A|A Chain A, Thermotoga Maritima Ftsa:ftsz(336-351)
pdb|4A2A|B Chain B, Thermotoga Maritima Ftsa:ftsz(336-351)
pdb|4A2B|A Chain A, Thermotoga Maritima Ftsa With Atp Gamma S
Length = 419
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 219 EAHRLIWSH---YYKNLKHEDFEYEGENRRCLEVLSPSCLSLMNHLRI 263
E+ RLI +H Y +LK E+ +Y G + ++ + LS++ H R+
Sbjct: 255 ESERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHARL 302
>pdb|3HAZ|A Chain A, Crystal Structure Of Bifunctional Proline Utilization A
(Puta) Protein
pdb|3HAZ|B Chain B, Crystal Structure Of Bifunctional Proline Utilization A
(Puta) Protein
Length = 1001
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 395 PIDPSWHVAEL----GQRSLEAHEETLKSAAVLHFSGPA 429
P D + HV + ++ L+AH +K+ A LHF+GPA
Sbjct: 826 PSDVATHVGPVIDVEAKQRLDAHIARMKTEARLHFAGPA 864
>pdb|3RIU|C Chain C, Crystal Structure Of Drosophila Hexameric C3po Formed By
Truncated Translin And Trax
Length = 269
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 182 MHSWFAINSFRSAVVEVKGLHQYDWSQEVNVGVKEMLEAHRLIWSHYYKNLKHEDFEYEG 241
++ A+N FR+ +E++ Y + + G++E +EA+ Y + L HED E E
Sbjct: 61 LNKLIAVN-FRAVALELRDQDVYQFRSSYSPGLQEFIEAY-----TYXEYLCHEDAEGEN 114
Query: 242 ENR 244
E +
Sbjct: 115 ETK 117
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,878,179
Number of Sequences: 62578
Number of extensions: 555978
Number of successful extensions: 1325
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1316
Number of HSP's gapped (non-prelim): 17
length of query: 462
length of database: 14,973,337
effective HSP length: 102
effective length of query: 360
effective length of database: 8,590,381
effective search space: 3092537160
effective search space used: 3092537160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)