Query 012480
Match_columns 462
No_of_seqs 309 out of 1308
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 10:16:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012480.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012480hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tzt_A Glycosyl transferase fa 100.0 1.4E-46 4.9E-51 372.1 13.7 259 138-455 5-275 (276)
2 1g9r_A Glycosyl transferase; a 100.0 1.9E-41 6.3E-46 340.5 12.7 252 139-448 1-268 (311)
3 1ll2_A Glycogenin-1; protein-s 99.9 2.2E-27 7.6E-32 240.6 10.6 225 138-449 4-254 (333)
4 3u2u_A Glycogenin-1, GN-1, GN1 99.9 7E-26 2.4E-30 222.3 8.0 137 257-435 82-224 (263)
5 2lse_A Four helix bundle prote 61.5 2.3 7.8E-05 33.0 0.0 55 17-77 5-61 (101)
6 1fo8_A Alpha-1,3-mannosyl-glyc 40.5 54 0.0019 32.4 7.1 41 254-294 80-122 (343)
7 1o7q_A N-acetyllactosaminide a 37.5 1E+02 0.0035 29.8 8.2 124 266-403 133-261 (289)
8 3pmr_A Amyloid-like protein 1; 22.7 1.1E+02 0.0038 28.3 5.4 30 62-91 66-95 (219)
9 3umh_A Amyloid beta A4 protein 21.0 1.2E+02 0.0043 27.9 5.3 30 62-91 59-88 (211)
10 1zxa_A CGMP-dependent protein 20.5 72 0.0025 24.1 3.0 48 44-91 4-51 (67)
11 2akf_A Coronin-1A; coiled coil 20.1 55 0.0019 20.6 1.8 21 62-82 10-30 (32)
No 1
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0
Probab=100.00 E-value=1.4e-46 Score=372.13 Aligned_cols=259 Identities=17% Similarity=0.225 Sum_probs=180.6
Q ss_pred cceEEEEecCcc--ccchhhhHhhhccCCCCceEEEEEeCCCCccchhhhhhccccccceeeeeeecccccccchhhhHH
Q 012480 138 FHHVVLLTDNVL--AASVVVSSTVQNSARPEKLVFHIVTDKKTYTPMHSWFAINSFRSAVVEVKGLHQYDWSQEVNVGVK 215 (462)
Q Consensus 138 ~ihIv~~sDn~l--a~sV~I~Sil~ns~~p~~i~FhIltd~~s~~~~~~wf~~n~~~~a~v~v~~i~~F~~l~~~~~p~l 215 (462)
.||||+++|+.+ +++|+|+|+++|+++ ++++|||++++++.+..+..-.
T Consensus 5 ~i~I~~~~d~~Y~~~~~v~i~Sl~~~~~~-~~~~~~il~~~is~~~~~~L~~---------------------------- 55 (276)
T 3tzt_A 5 ADALLLTLDENYIPQMKVLMTSIYINNPG-RIFDVYLIHSRISEDKLKDLGE---------------------------- 55 (276)
T ss_dssp CEEEEEECCGGGHHHHHHHHHHHHHHSTT-CCEEEEEEESCCCHHHHHHHHH----------------------------
T ss_pred eEEEEEEeCHhHHHHHHHHHHHHHHhCCC-CceEEEEEeCCCCHHHHHHHHH----------------------------
Confidence 599999999866 599999999999986 6799999999998654321110
Q ss_pred HHHHHhHhHHHhhccCCcccccccchhhhhhhccCCCCcccHhHHHHHhhccccC-CCCeEEEEecCeeeccCcHHHhcc
Q 012480 216 EMLEAHRLIWSHYYKNLKHEDFEYEGENRRCLEVLSPSCLSLMNHLRIYIPELFP-DLNKILFLDDDVVVQHDLSSLLEL 294 (462)
Q Consensus 216 ~~l~~~~~i~~~y~~~~~~~~~~~p~~~~~~l~~~~~~~~S~~~y~Rl~ipellp-~~~KVLYLD~DvVV~~DLs~Lw~~ 294 (462)
+...+..+...+.+. ++.+. .+ ...+++|..+|+||++|+++| +++||||||+|+||++||++||++
T Consensus 56 --------~~~~~~~~i~~~~~~-~~~~~-~~--~~~~~~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~ 123 (276)
T 3tzt_A 56 --------DLKKFSYTLYPIRAT-DDLFS-FA--KVTDRYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRT 123 (276)
T ss_dssp --------HHHTTTCEEEEEECC-----------------CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTC
T ss_pred --------HHHHcCCEEEEEEeC-HHHHh-cC--ccccccCHHHHHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhhc
Confidence 001111111111110 11111 11 123467999999999999999 699999999999999999999999
Q ss_pred CCCCceEEEEecCCCCCCCCCCcccccccccCCccccCCCCCCCcccccceeeeecHHHHHhhHHHHHHHHHHHhccCCC
Q 012480 295 DLNGKVVGAVVGSSCGDNCCPGRKYKDYLNFSYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLKLNLKSGL 374 (462)
Q Consensus 295 dl~g~~iaAV~d~~~~~~~~~~~~~~~~l~~s~p~i~~~~~~~~~yfNsGV~linL~~wR~~~it~~~~~~l~~~~~~~~ 374 (462)
|++|+++|||+||+... ..+..+ ..+++...||||||||||||++||+.+++++++++++++. ..+
T Consensus 124 dl~~~~~aav~d~~~~~-------~~~~~~------~~~l~~~~~yfNsGV~linl~~~R~~~~~~~~~~~~~~~~-~~~ 189 (276)
T 3tzt_A 124 DISDYILAAASHTGKTD-------MANNVN------RIRLGTDTDYYNSGLLLINLKRAREEIDPDEIFSFVEDNH-MNL 189 (276)
T ss_dssp CCTTSSEEEEEC---------------------------------CEEEEEEEEEHHHHHHHCCHHHHHHHHHHC-----
T ss_pred CCCCCeEEEEEecccch-------HHHHHH------HhcCCCCCCeEEeeEEEEEHHHHHhhhHHHHHHHHHHhcc-ccc
Confidence 99999999999997531 111111 1124444699999999999999999999999999998864 356
Q ss_pred CCCCCCCCcHHHhhcCCCeEecCC-cccccccCCCch-------h-hhHhhcCCCEEEeccCCCCCCCCCCCCccHHHHH
Q 012480 375 ELWQPGALPPALLALDGNVHPIDP-SWHVAELGQRSL-------E-AHEETLKSAAVLHFSGPAKPWLEIGLPEVRGLWS 445 (462)
Q Consensus 375 ~~~dQd~L~~~n~~f~~~i~~L~~-~wN~~~lgy~~~-------~-~~~~~~~~~~IIHy~G~~KPW~~~~~~~y~~~W~ 445 (462)
.++|||+| |.+|.+++++||+ +||+++ |+... . ...+..++|+||||+|+.|||...+.++|+++||
T Consensus 190 ~~~DQd~L---N~~f~~~~~~Lp~~~wN~~~-~~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~~w~ 265 (276)
T 3tzt_A 190 LLPDQDIL---NAMYGDRIYPLDDLIYNYDA-RNYSSYLIRSKKQADLAWLMDHTVVLHFCGRDKPWKKNHRNKFTSLYK 265 (276)
T ss_dssp ----CHHH---HHHHGGGEEEEEHHHHSEET-TCHHHHHHHTTTCCSHHHHHHHCCEEECCSSCCTTSTTCCSTTHHHHH
T ss_pred cCCChhHH---HHHHhCCEEECCchheeeec-ccchhhhccccchhhhhhhccCCeEEEECCCCCCcCCCCCCchHHHHH
Confidence 78999998 6799999999999 999986 33210 0 0123467899999999999999998899999999
Q ss_pred HHHccCchhh
Q 012480 446 GHVNFSNKFI 455 (462)
Q Consensus 446 ~Y~~~~~~~~ 455 (462)
+|++..+++|
T Consensus 266 ~Y~~~~~~~~ 275 (276)
T 3tzt_A 266 HYMSLTKRYL 275 (276)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhh
Confidence 9999998886
No 2
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A*
Probab=100.00 E-value=1.9e-41 Score=340.47 Aligned_cols=252 Identities=19% Similarity=0.283 Sum_probs=184.2
Q ss_pred ceEEEEecCcc--ccchhhhHh-hhccCCCCceEEEEEeCCCCccchhhhhhccccccceeeeeeecccccccchhhhHH
Q 012480 139 HHVVLLTDNVL--AASVVVSST-VQNSARPEKLVFHIVTDKKTYTPMHSWFAINSFRSAVVEVKGLHQYDWSQEVNVGVK 215 (462)
Q Consensus 139 ihIv~~sDn~l--a~sV~I~Si-l~ns~~p~~i~FhIltd~~s~~~~~~wf~~n~~~~a~v~v~~i~~F~~l~~~~~p~l 215 (462)
||||+++|+.+ +++|+++|+ +.|++ .+++|||++++++.+..+..-.
T Consensus 1 m~I~~~~d~~Y~~~~~vli~Sl~l~~~~--~~~~f~il~~~ls~~~~~~L~~---------------------------- 50 (311)
T 1g9r_A 1 MDIVFAADDNYAAYLCVAAKSVEAAHPD--TEIRFHVLDAGISEANRAAVAA---------------------------- 50 (311)
T ss_dssp CEEEEEECGGGHHHHHHHHHHHHHTCTT--SCCEEEEEESSCCHHHHHHHHH----------------------------
T ss_pred CeEEEECCHhHHHHHHHHHHHHHHHcCC--CCceEEEEECCCCHHHHHHHHH----------------------------
Confidence 69999999865 589999999 99875 4699999999998654321100
Q ss_pred HHHHHhHhHHHhhccCCcccccccchhhhhhhccCCCCcccHhHHHHHhhccccCCCCeEEEEecCeeeccCcHHHhccC
Q 012480 216 EMLEAHRLIWSHYYKNLKHEDFEYEGENRRCLEVLSPSCLSLMNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELD 295 (462)
Q Consensus 216 ~~l~~~~~i~~~y~~~~~~~~~~~p~~~~~~l~~~~~~~~S~~~y~Rl~ipellp~~~KVLYLD~DvVV~~DLs~Lw~~d 295 (462)
+...|+.....+.++ +..+. ++. ...+++|..+|+||++|++||+++||||||+|+||++||++||++|
T Consensus 51 --------~~~~~~~~i~~~~~~-~~~~~-~~~-~~~~~~s~~~y~Rl~l~~ll~~~~kvlyLD~D~iv~~di~eL~~~~ 119 (311)
T 1g9r_A 51 --------NLRGGGGNIRFIDVN-PEDFA-GFP-LNIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTD 119 (311)
T ss_dssp --------HSGGGTTTEEEEECC-GGGGT-TSC-CCCTTCCGGGGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCC
T ss_pred --------HHHHcCCEEEEEEcC-HHHHh-cCc-cccccCCHHHHHHHHHHHHhhhcCEEEEEcCCeEeccCHHHHhccC
Confidence 000111111111111 11110 111 1135789999999999999999999999999999999999999999
Q ss_pred CCCceEEEEecCCCCCCCCCCcccccccccCCccccCCCCCCCcccccceeeeecHHHHHhhHHHHHHHHHHHhccCCCC
Q 012480 296 LNGKVVGAVVGSSCGDNCCPGRKYKDYLNFSYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLKLNLKSGLE 375 (462)
Q Consensus 296 l~g~~iaAV~d~~~~~~~~~~~~~~~~l~~s~p~i~~~~~~~~~yfNsGV~linL~~wR~~~it~~~~~~l~~~~~~~~~ 375 (462)
++|+++|||+||.... ...+...+ ++++..+||||||||||+++||+.++++++++|++++. ....
T Consensus 120 l~~~~~aav~d~~~~~----~~~~~~~~---------~~~~~~~yfNsGv~linl~~~r~~~~~~~~~~~~~~~~-~~~~ 185 (311)
T 1g9r_A 120 LGDNWLGASIDLFVER----QEGYKQKI---------GMADGEYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYK-DVMQ 185 (311)
T ss_dssp CTTCSEEEEECHHHHT----STTHHHHT---------TCCTTSCCEEEEEEEECHHHHTTSCHHHHHHHHHHHHT-TTCS
T ss_pred CCCcEEEEEeccchhh----hHHHHHhc---------CCCCCCceEeeeeeeeeHHHHHhcchHHHHHHHHHhcc-CcCc
Confidence 9999999999986320 11222222 24445789999999999999999999999999998875 3567
Q ss_pred CCCCCCCcHHHhhcCCCeEecCCcccccccCC---Cc--------hh--hhHhhcCCCEEEeccCCCCCCCCCCCCccHH
Q 012480 376 LWQPGALPPALLALDGNVHPIDPSWHVAELGQ---RS--------LE--AHEETLKSAAVLHFSGPAKPWLEIGLPEVRG 442 (462)
Q Consensus 376 ~~dQd~L~~~n~~f~~~i~~L~~~wN~~~lgy---~~--------~~--~~~~~~~~~~IIHy~G~~KPW~~~~~~~y~~ 442 (462)
++|||+| |.+|.+++..||.+||++..++ .. .. ...+..++++||||+|+.|||...+.+++.+
T Consensus 186 ~~DQd~l---N~~f~~~~~~Lp~~wN~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiHy~g~~KPW~~~~~~~~~~ 262 (311)
T 1g9r_A 186 YQDQDIL---NGLFKGGVCYANSRFNFMPTNYAFMANWFASRHTDPLYRDRTNTVMPVAVSHYCGPAKPWHRDCTAWGAE 262 (311)
T ss_dssp SHHHHHH---HHHHTTSEEEECGGGSBCHHHHHTCC----CSCCCHHHHHHHSCCSSCSEEECCSSCCTTSSSCCSTTTH
T ss_pred cCCcCHH---HHHHcCCEEEcChhhccCcchhhHHhhhcccccchhhhhHHhhccCCCEEEEeCCcCCCCCCCCCCccHH
Confidence 8999998 6789999999999999985321 00 00 0122346889999999999999888777777
Q ss_pred HHHHHH
Q 012480 443 LWSGHV 448 (462)
Q Consensus 443 ~W~~Y~ 448 (462)
+|..+.
T Consensus 263 ~~~~~~ 268 (311)
T 1g9r_A 263 RFTELA 268 (311)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666655
No 3
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A*
Probab=99.94 E-value=2.2e-27 Score=240.56 Aligned_cols=225 Identities=18% Similarity=0.160 Sum_probs=149.3
Q ss_pred cceEEEEecCcc--ccchhhhHhhhccCCCCceEEEEEeCCCCccchhhhhhccccccceeeeeeecccccccchhhhHH
Q 012480 138 FHHVVLLTDNVL--AASVVVSSTVQNSARPEKLVFHIVTDKKTYTPMHSWFAINSFRSAVVEVKGLHQYDWSQEVNVGVK 215 (462)
Q Consensus 138 ~ihIv~~sDn~l--a~sV~I~Sil~ns~~p~~i~FhIltd~~s~~~~~~wf~~n~~~~a~v~v~~i~~F~~l~~~~~p~l 215 (462)
...|++++|+.| ++.|++.|+..|+++ ..++| +++++++.+..+..-. .. ..|+.++...
T Consensus 4 ~a~vt~~~d~~Yl~~a~vl~~SL~~~~s~-~~l~v-lv~~~is~~~~~~L~~---~~---~~v~~v~~l~---------- 65 (333)
T 1ll2_A 4 QAFVTLTTNDAYAKGALVLGSSLKQHRTS-RRLAV-LTTPQVSDTMRKALEI---VF---DEVITVDILD---------- 65 (333)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTTCC-SEEEE-EECTTSCHHHHHHHHH---HC---SEEEECCTTS----------
T ss_pred eEEEEEEeCHHHHHHHHHHHHHHHHhCCC-CCEEE-EEcCCCCHHHHHHHHH---hC---CEEEEEeecC----------
Confidence 467888888754 588899999999865 34665 6677887554321110 00 0111111000
Q ss_pred HHHHHhHhHHHhhccCCcccccccchhhhhhhcc-CCCCcccHhHHHHHhhccccCCCCeEEEEecCeeeccCcHHHhcc
Q 012480 216 EMLEAHRLIWSHYYKNLKHEDFEYEGENRRCLEV-LSPSCLSLMNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLEL 294 (462)
Q Consensus 216 ~~l~~~~~i~~~y~~~~~~~~~~~p~~~~~~l~~-~~~~~~S~~~y~Rl~ipellp~~~KVLYLD~DvVV~~DLs~Lw~~ 294 (462)
.+ ...++.. .++ .+..+|+||++|++ ++++||||||+|+||.+||++||++
T Consensus 66 -----------------------~~--~~~~~~~~~~~--~~~~t~~Kl~i~~l-~~ydrvlYLDaD~lv~~di~eLf~~ 117 (333)
T 1ll2_A 66 -----------------------SG--DSAHLTLMKRP--ELGVTLTKLHCWSL-TQYSKCVFMDADTLVLANIDDLFER 117 (333)
T ss_dssp -----------------------TT--STTHHHHHHCG--GGHHHHHHGGGGGC-TTCSEEEEECTTEEECSCCGGGGGS
T ss_pred -----------------------Cc--chhhccccccc--chHHHHHHHHHhHh-cCCCeEEEEeCCEEeccCHHHHhCC
Confidence 00 0001110 011 23589999999996 7899999999999999999999998
Q ss_pred CCCCceEEEEecCCCCCCCCCCcccccccccCCccccCCCCCCCcccccceeeeecHHHHHhhHHHHHHHHHHHhccCCC
Q 012480 295 DLNGKVVGAVVGSSCGDNCCPGRKYKDYLNFSYPIISSNFDHDHCAWLYGMNVLDLEAWRRTNITATYHKWLKLNLKSGL 374 (462)
Q Consensus 295 dl~g~~iaAV~d~~~~~~~~~~~~~~~~l~~s~p~i~~~~~~~~~yfNsGV~linL~~wR~~~it~~~~~~l~~~~~~~~ 374 (462)
+ .+|||+|.+. .+||||||||||++. ...+++++++.++. .+
T Consensus 118 ~----~~aAv~d~~~----------------------------~~~fNsGvmlin~~~----~~~~~l~~~~~~~~--~~ 159 (333)
T 1ll2_A 118 E----ELSAAPDPGW----------------------------PDCFNSGVFVYQPSV----ETYNQLLHVASEQG--SF 159 (333)
T ss_dssp C----SSEEEECSSS----------------------------TTSEEEEEEEECCCH----HHHHHHHHHHHHTC--CT
T ss_pred C----ceeEEecCCC----------------------------CcceeeeEEEEeCCH----HHHHHHHHHHHhcC--CC
Confidence 6 4788887421 258999999998853 34456777776642 46
Q ss_pred CCCCCCCCcHHHhhcCCCe-----EecCCccccccc-CCCchhhhHhhcCCCEEEeccCCCCCCCCCCCC----------
Q 012480 375 ELWQPGALPPALLALDGNV-----HPIDPSWHVAEL-GQRSLEAHEETLKSAAVLHFSGPAKPWLEIGLP---------- 438 (462)
Q Consensus 375 ~~~dQd~L~~~n~~f~~~i-----~~L~~~wN~~~l-gy~~~~~~~~~~~~~~IIHy~G~~KPW~~~~~~---------- 438 (462)
.++|||+| |.+|.+.+ ..||.+||++.. +|..........++++||||+|..|||...+.+
T Consensus 160 ~~~DQ~~L---N~~f~~~~~~~~~~~Lp~~yN~~~~~~~~~~p~~~~~~~~~~IiHf~g~~KPW~~~~~~~~~~~~~~~~ 236 (333)
T 1ll2_A 160 DGGDQGLL---NTFFNSWATTDIRKHLPFIYNLSSISIYSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSVRSEGH 236 (333)
T ss_dssp TSSHHHHH---HHHTTTTTTSCGGGBCCGGGSEETTHHHHTHHHHHHHGGGCSEEECCSSCCGGGSCEETTTTEEC----
T ss_pred CCCCHHHH---HHHHHhhcccCccccCCcHHhcccccchhccHHHHhhcCCCEEEEECCCCCCCCCCCCCCccccccccc
Confidence 78899998 56787643 799999999853 232211112345789999999999999875221
Q ss_pred -------ccHHHHHHHHc
Q 012480 439 -------EVRGLWSGHVN 449 (462)
Q Consensus 439 -------~y~~~W~~Y~~ 449 (462)
++.+.||.+.+
T Consensus 237 ~~~~~~~~~~~~WW~~~~ 254 (333)
T 1ll2_A 237 DPTMTHPQFLNVWWDIFT 254 (333)
T ss_dssp ----CCHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHH
Confidence 45778998754
No 4
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A
Probab=99.92 E-value=7e-26 Score=222.31 Aligned_cols=137 Identities=17% Similarity=0.154 Sum_probs=108.3
Q ss_pred HhHHHHHhhccccCCCCeEEEEecCeeeccCcHHHhccCCCCceEEEEecCCCCCCCCCCcccccccccCCccccCCCCC
Q 012480 257 LMNHLRIYIPELFPDLNKILFLDDDVVVQHDLSSLLELDLNGKVVGAVVGSSCGDNCCPGRKYKDYLNFSYPIISSNFDH 336 (462)
Q Consensus 257 ~~~y~Rl~ipellp~~~KVLYLD~DvVV~~DLs~Lw~~dl~g~~iaAV~d~~~~~~~~~~~~~~~~l~~s~p~i~~~~~~ 336 (462)
..+|.|+.++++.+ ++||||||+|++|.+||++||+++ .+|||.|.+.
T Consensus 82 ~~~~~kl~~~~l~~-~~~vlylD~D~~v~~~~~~Lf~~~----~~aA~~d~~~--------------------------- 129 (263)
T 3u2u_A 82 GVTLTKLHCWSLTQ-YSKCVFMDADTLVLANIDDLFDRE----ELSAAPDPGW--------------------------- 129 (263)
T ss_dssp GGGGGGGGGGGCTT-CSEEEEECTTEEECSCCGGGGGSC----SSEEEECTTS---------------------------
T ss_pred hHHhHHHHhccccC-cceEEEEcCCEeeccCHHHHhCCC----cceEeccCCC---------------------------
Confidence 36889999999875 999999999999999999999987 4788887431
Q ss_pred CCcccccceeeeecHHHHHhhHHHHHHHHHHHhccCCCCCCCCCCCcHHHhhcCC-----CeEecCCcccccc-cCCCch
Q 012480 337 DHCAWLYGMNVLDLEAWRRTNITATYHKWLKLNLKSGLELWQPGALPPALLALDG-----NVHPIDPSWHVAE-LGQRSL 410 (462)
Q Consensus 337 ~~~yfNsGV~linL~~wR~~~it~~~~~~l~~~~~~~~~~~dQd~L~~~n~~f~~-----~i~~L~~~wN~~~-lgy~~~ 410 (462)
..||||||||||++ .++.+++.+++++.. .+.++|||+| |.+|.+ .++.||.+||++. ..|...
T Consensus 130 -~~~fNsGv~li~p~----~~~~~~l~~~~~~~~--~~~~~DQd~L---N~~f~~w~~~~~~~~Lp~~yN~~~~~~y~~~ 199 (263)
T 3u2u_A 130 -PDCFNSGVFVYQPS----VETYNQLLHLASEQG--SFDGGDQGIL---NTFFSSWATTDIRKHLPFIYNLSSISIYSYL 199 (263)
T ss_dssp -TTSEEEEEEEECCC----HHHHHHHHHHHHHHC--CTTSSHHHHH---HHHTTTTTTSCGGGBCCGGGSEEHHHHHSSH
T ss_pred -CccccCeEEEEccc----HHHHHHHHHHHHhcC--CCCcccHHHH---HHHhccccccCeeEeCCcccccccchhcccc
Confidence 24899999999986 356677778777653 5778999999 568877 7899999999974 233322
Q ss_pred hhhHhhcCCCEEEeccCCCCCCCCC
Q 012480 411 EAHEETLKSAAVLHFSGPAKPWLEI 435 (462)
Q Consensus 411 ~~~~~~~~~~~IIHy~G~~KPW~~~ 435 (462)
....+..++++||||+|..|||...
T Consensus 200 ~~~~~~~~~~~IIHf~g~~KPW~~~ 224 (263)
T 3u2u_A 200 PAFKVFGASAKVVHFLGRVKPWNYT 224 (263)
T ss_dssp HHHHHHGGGCSEEECCSSSCGGGSE
T ss_pred HHHHhhcCCeEEEEECCCCcCCCCC
Confidence 2122346789999999999999863
No 5
>2lse_A Four helix bundle protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=61.53 E-value=2.3 Score=33.02 Aligned_cols=55 Identities=31% Similarity=0.363 Sum_probs=35.0
Q ss_pred chhHHHHHHHHHHHHhcCCCCCCCCccCccchHHHHHHHHhccc--ccHHHHHHHHHHHHHHH
Q 012480 17 MKKLREELTRALIEAKDGSGNGGGRIQGTLDSFNELVKEVTSKR--QDIKAFAFKTKAMLLKM 77 (462)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~kl~~~~~~~ 77 (462)
+.+|.+.|+.+|.|.++| +|+.++. .+..+-+..+... -|+++++.|.|+-+..|
T Consensus 5 rkklleklekildevtdg-apdeare-----rieklakdvkdeleegdaknmiekfrdemeqm 61 (101)
T 2lse_A 5 RKKLLEKLEKILDEVTDG-APDEARE-----RIEKLAKDVKDELEEGDAKNMIEKFRDEMEQM 61 (101)
Confidence 346788899999998887 4444331 2334433443322 68889999988765444
No 6
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=40.54 E-value=54 Score=32.44 Aligned_cols=41 Identities=17% Similarity=0.365 Sum_probs=30.6
Q ss_pred cccHhHHHHHhhccccC--CCCeEEEEecCeeeccCcHHHhcc
Q 012480 254 CLSLMNHLRIYIPELFP--DLNKILFLDDDVVVQHDLSSLLEL 294 (462)
Q Consensus 254 ~~S~~~y~Rl~ipellp--~~~KVLYLD~DvVV~~DLs~Lw~~ 294 (462)
|..+..+++--+-.+|. ..++||+||+|+++.-|.-+.++.
T Consensus 80 y~~ia~h~~~al~~vf~~~~~~~vIiLEDDl~~spdF~~y~~~ 122 (343)
T 1fo8_A 80 YYKIARHYRWALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQA 122 (343)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSEEEEEETTEEECTTHHHHHHH
T ss_pred chhHhHHHHHHHHHHHHhccCCEEEEEcCCCeECHHHHHHHHH
Confidence 33455666666667776 699999999999999998655543
No 7
>1o7q_A N-acetyllactosaminide alpha-1,3- galactosyltransferase; 3-galactosyltransferase-UDP complex, glycosyltransferase, glycoprotein, transmembrane; HET: GAL NAG UDP; 1.3A {Bos taurus} SCOP: c.68.1.9 PDB: 1gwv_A* 1gx0_A* 1gww_A* 1k4v_A* 1gx4_A* 2jco_A 1g8o_A* 1fg5_N* 1g93_A* 2wgz_A* 1o7o_A* 2vs4_A* 2jck_A* 2jcl_A 2vfz_A* 2vs3_A* 1vzu_A* 1vzx_A* 1vzt_A* 2jcj_A* ...
Probab=37.46 E-value=1e+02 Score=29.82 Aligned_cols=124 Identities=12% Similarity=0.106 Sum_probs=71.7
Q ss_pred ccccCCCCeEEEEecCeeeccCcHHHhccCCCCceEEEEecCCCCCCCCCCccccccccc-CCcccc--CCCCCCCcccc
Q 012480 266 PELFPDLNKILFLDDDVVVQHDLSSLLELDLNGKVVGAVVGSSCGDNCCPGRKYKDYLNF-SYPIIS--SNFDHDHCAWL 342 (462)
Q Consensus 266 pellp~~~KVLYLD~DvVV~~DLs~Lw~~dl~g~~iaAV~d~~~~~~~~~~~~~~~~l~~-s~p~i~--~~~~~~~~yfN 342 (462)
.+++.++|-+.++|+|+++++++..= .| |..+|......-..+ +..+.+ .+|.=. -.++.+..|+.
T Consensus 133 ~~~~~evDYLf~~dvd~~F~~~vG~E---~L-g~lv~~lHp~~y~~~-------~~~fpYERrp~S~AyIp~~eGdfYY~ 201 (289)
T 1o7q_A 133 AHIQHEVDFLFCMDVDQVFQDKFGVE---TL-GESVAQLQAWWYKAD-------PNDFTYERRKESAAYIPFGEGDFYYH 201 (289)
T ss_dssp HTHHHHCSEEEEECSSEEECSCBCGG---GC-SSEEEEECTTTTTSC-------GGGSCCCCCTTSTTCCCTTCCSCCEE
T ss_pred HHHhhcCCEEEEeeCCcEeeccCCHH---HH-HHHHHccCHHHhCCC-------CCCCCCCCCcCceeeecCCCCCEEEE
Confidence 45566899999999999999998541 23 456666544321100 000000 111100 13567789999
Q ss_pred cceeeeecHHHHHhhHHHHHHHHHHHhccCC--CCCCCCCCCcHHHhhcCCCeEecCCccccc
Q 012480 343 YGMNVLDLEAWRRTNITATYHKWLKLNLKSG--LELWQPGALPPALLALDGNVHPIDPSWHVA 403 (462)
Q Consensus 343 sGV~linL~~wR~~~it~~~~~~l~~~~~~~--~~~~dQd~L~~~n~~f~~~i~~L~~~wN~~ 403 (462)
+|++==-..+--+ +++.|.+-+.+-..++ -.+.|..-||-. ...+...+.|++.|...
T Consensus 202 Ga~fGGt~~~vl~--l~~~c~~~i~~D~~n~I~A~wHDESHLNKY-f~~~KPtKvLSPEY~wd 261 (289)
T 1o7q_A 202 AAIFGGTPTQVLN--ITQECFKGILKDKKNDIEAQWHDESHLNKY-FLLNKPTKILSPEYCWD 261 (289)
T ss_dssp EEEEEECHHHHHH--HHHHHHHHHHHHHHTTCCCTTTHHHHHHHH-HHHSCCSEEECGGGSBC
T ss_pred ceeeCCcHHHHHH--HHHHHHHHHHHHHhCCeEEEecchhhhhHH-HhhcCCCEEECHHHCCC
Confidence 9998655554443 6666666554322222 245566777653 23466778899988764
No 8
>3pmr_A Amyloid-like protein 1; heparin binding, cell adhesion; 2.11A {Homo sapiens} SCOP: a.47.4.0 PDB: 3q7l_A 3q7g_A 3qmk_A*
Probab=22.68 E-value=1.1e+02 Score=28.34 Aligned_cols=30 Identities=27% Similarity=0.295 Sum_probs=25.0
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 012480 62 DIKAFAFKTKAMLLKMEHEVQSSRQRESIY 91 (462)
Q Consensus 62 ~~~~~~~kl~~~~~~~e~~~~~~~~~~~~~ 91 (462)
|-+++.+...+++.++|++..+.|+|..-.
T Consensus 66 dkk~m~~rFQ~~v~aLE~E~~~ErqqL~et 95 (219)
T 3pmr_A 66 DRQALNEHFQSILQTLEEQVSGERQRLVET 95 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 447889999999999999999988875543
No 9
>3umh_A Amyloid beta A4 protein; metal binding site, metal binding, cell surface, secretory P metal binding protein; 2.00A {Homo sapiens} SCOP: a.47.4.1 PDB: 3umi_A 3umk_A 1rw6_A 3nyl_A 3nyj_A 1tkn_A
Probab=21.03 E-value=1.2e+02 Score=27.89 Aligned_cols=30 Identities=23% Similarity=0.171 Sum_probs=25.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 012480 62 DIKAFAFKTKAMLLKMEHEVQSSRQRESIY 91 (462)
Q Consensus 62 ~~~~~~~kl~~~~~~~e~~~~~~~~~~~~~ 91 (462)
|-+++.+...+++.++|+++.+.|+|..-.
T Consensus 59 dkk~~~~rFQ~~v~aLE~E~~~ErqqL~et 88 (211)
T 3umh_A 59 DKKAVIQHFQEKVESLEQEAANERQQLVET 88 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 567899999999999999999988876543
No 10
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=20.52 E-value=72 Score=24.09 Aligned_cols=48 Identities=17% Similarity=0.079 Sum_probs=24.7
Q ss_pred CccchHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 012480 44 GTLDSFNELVKEVTSKRQDIKAFAFKTKAMLLKMEHEVQSSRQRESIY 91 (462)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~kl~~~~~~~e~~~~~~~~~~~~~ 91 (462)
|+|.||...+.+.....-.-...+.-|.+.+..-+++.+..+.+..-+
T Consensus 4 ~~~~~~~~~~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~ 51 (67)
T 1zxa_A 4 GIPGSTSELEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLHKC 51 (67)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888777777666666677777777888888887776665544
No 11
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=20.12 E-value=55 Score=20.56 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=15.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHH
Q 012480 62 DIKAFAFKTKAMLLKMEHEVQ 82 (462)
Q Consensus 62 ~~~~~~~kl~~~~~~~e~~~~ 82 (462)
..+++.++|...++.+||-++
T Consensus 10 ~l~~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 10 NLNAIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 346777888888888888765
Done!