Query 012481
Match_columns 462
No_of_seqs 115 out of 1325
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 03:05:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012481.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012481hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK00013 groEL chaperonin GroE 100.0 4.2E-97 9E-102 790.8 49.7 456 5-462 52-517 (542)
2 PRK12849 groEL chaperonin GroE 100.0 1.9E-96 4E-101 785.9 49.9 455 5-462 52-516 (542)
3 PRK12852 groEL chaperonin GroE 100.0 2.2E-96 5E-101 787.6 50.2 452 5-462 53-518 (545)
4 cd03344 GroEL GroEL_like type 100.0 3.1E-96 7E-101 781.9 49.9 455 5-462 50-514 (520)
5 PRK14104 chaperonin GroEL; Pro 100.0 1.9E-96 4E-101 786.5 47.5 452 5-462 53-518 (546)
6 TIGR02348 GroEL chaperonin Gro 100.0 6.2E-96 1E-100 780.8 49.5 454 5-462 51-515 (524)
7 PTZ00114 Heat shock protein 60 100.0 6.1E-96 1E-100 785.1 49.5 456 5-462 64-533 (555)
8 CHL00093 groEL chaperonin GroE 100.0 6.6E-96 1E-100 781.4 47.3 454 5-462 52-518 (529)
9 PRK12850 groEL chaperonin GroE 100.0 1.8E-95 4E-100 779.2 49.1 455 5-462 53-517 (544)
10 PRK12851 groEL chaperonin GroE 100.0 5.9E-95 1.3E-99 774.8 48.8 455 5-462 53-517 (541)
11 PLN03167 Chaperonin-60 beta su 100.0 4.4E-95 1E-99 780.6 46.8 455 5-462 108-574 (600)
12 KOG0356 Mitochondrial chaperon 100.0 6E-86 1.3E-90 670.7 34.4 450 7-461 68-529 (550)
13 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 1.3E-78 2.8E-83 643.2 34.8 391 5-462 54-476 (484)
14 TIGR02347 chap_CCT_zeta T-comp 100.0 1.3E-77 2.7E-82 641.0 40.3 398 5-462 58-519 (531)
15 COG0459 GroL Chaperonin GroEL 100.0 4.5E-79 9.7E-84 645.3 24.3 428 6-462 54-507 (524)
16 cd03343 cpn60 cpn60 chaperonin 100.0 6.1E-77 1.3E-81 636.4 40.2 397 5-462 57-510 (517)
17 TIGR02339 thermosome_arch ther 100.0 1.4E-76 3.1E-81 633.4 40.3 397 5-462 58-513 (519)
18 cd03335 TCP1_alpha TCP-1 (CTT 100.0 1.3E-76 2.8E-81 634.5 39.4 402 5-462 50-519 (527)
19 TIGR02342 chap_CCT_delta T-com 100.0 2.3E-76 4.9E-81 631.0 38.4 404 5-462 51-510 (517)
20 cd03338 TCP1_delta TCP-1 (CTT 100.0 3.9E-76 8.4E-81 629.7 37.6 404 5-462 50-509 (515)
21 TIGR02340 chap_CCT_alpha T-com 100.0 8.8E-76 1.9E-80 628.9 38.9 402 5-462 54-523 (536)
22 TIGR02343 chap_CCT_epsi T-comp 100.0 1E-75 2.3E-80 627.2 39.4 397 5-462 69-525 (532)
23 cd03339 TCP1_epsilon TCP-1 (CT 100.0 9E-76 2E-80 627.8 38.7 397 5-462 65-521 (526)
24 cd03340 TCP1_eta TCP-1 (CTT or 100.0 6.6E-75 1.4E-79 620.9 40.5 400 5-462 58-513 (522)
25 TIGR02344 chap_CCT_gamma T-com 100.0 5.4E-75 1.2E-79 622.0 38.6 397 5-462 58-515 (525)
26 TIGR02345 chap_CCT_eta T-compl 100.0 7.9E-75 1.7E-79 619.8 38.1 400 5-462 59-513 (522)
27 TIGR02346 chap_CCT_theta T-com 100.0 4.1E-75 8.9E-80 622.4 34.6 396 5-462 60-513 (531)
28 cd03336 TCP1_beta TCP-1 (CTT o 100.0 9.3E-74 2E-78 610.8 41.2 396 5-462 57-507 (517)
29 PTZ00212 T-complex protein 1 s 100.0 3.3E-74 7.1E-79 616.1 35.2 396 5-462 69-519 (533)
30 cd03337 TCP1_gamma TCP-1 (CTT 100.0 5.1E-74 1.1E-78 607.8 35.0 380 5-462 58-474 (480)
31 TIGR02341 chap_CCT_beta T-comp 100.0 3.8E-73 8.3E-78 605.7 37.2 396 5-462 58-508 (519)
32 cd03341 TCP1_theta TCP-1 (CTT 100.0 6.4E-72 1.4E-76 590.6 37.3 382 5-462 50-465 (472)
33 cd00309 chaperonin_type_I_II c 100.0 1.3E-71 2.8E-76 588.3 39.4 380 5-462 50-459 (464)
34 KOG0361 Chaperonin complex com 100.0 3.7E-73 8.1E-78 553.3 25.2 399 6-462 63-516 (543)
35 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 4.6E-67 1E-71 556.0 36.2 396 5-462 31-477 (485)
36 KOG0358 Chaperonin complex com 100.0 3.7E-66 8.1E-71 503.5 24.1 409 6-462 69-527 (534)
37 KOG0363 Chaperonin complex com 100.0 3.3E-64 7.3E-69 487.8 29.2 395 6-462 63-512 (527)
38 KOG0359 Chaperonin complex com 100.0 2.9E-60 6.3E-65 468.9 22.5 396 5-461 59-507 (520)
39 KOG0360 Chaperonin complex com 100.0 4.9E-60 1.1E-64 471.8 23.0 401 5-462 61-529 (545)
40 KOG0364 Chaperonin complex com 100.0 6.4E-57 1.4E-61 445.8 21.5 396 6-462 62-514 (527)
41 KOG0362 Chaperonin complex com 100.0 9.2E-56 2E-60 444.0 28.9 395 5-462 68-514 (537)
42 KOG0357 Chaperonin complex com 100.0 4.4E-54 9.6E-59 413.9 15.8 302 15-462 71-389 (400)
43 cd03333 chaperonin_like chaper 100.0 9.3E-28 2E-32 228.0 20.4 192 95-358 2-209 (209)
44 cd03334 Fab1_TCP TCP-1 like do 99.9 3.6E-25 7.7E-30 217.0 21.2 198 108-359 20-254 (261)
45 KOG0230 Phosphatidylinositol-4 98.7 2.5E-07 5.3E-12 105.4 13.9 203 111-368 337-577 (1598)
46 COG0459 GroL Chaperonin GroEL 97.4 0.00024 5.3E-09 76.4 6.6 89 186-290 259-354 (524)
47 smart00574 POX domain associat 50.1 32 0.0007 30.5 4.8 54 312-378 73-127 (140)
48 PRK13600 putative ribosomal pr 42.4 60 0.0013 26.3 4.9 55 188-252 20-74 (84)
49 PF07526 POX: Associated with 37.9 50 0.0011 29.4 4.3 42 337-378 85-127 (140)
50 TIGR02345 chap_CCT_eta T-compl 34.9 16 0.00034 39.7 0.7 61 195-256 245-314 (522)
51 PRK10343 RNA-binding protein Y 32.6 2.3E+02 0.0051 23.5 7.1 67 187-255 8-76 (97)
52 PTZ00212 T-complex protein 1 s 29.3 1.1E+02 0.0024 33.3 6.1 44 116-159 178-222 (533)
53 PF01985 CRS1_YhbY: CRS1 / Yhb 28.0 1.8E+02 0.0038 23.3 5.6 67 188-256 7-75 (84)
54 PRK06683 hypothetical protein; 27.0 1.5E+02 0.0033 23.7 5.0 53 190-252 20-72 (82)
55 COG1534 Predicted RNA-binding 25.3 3.8E+02 0.0083 22.3 7.1 67 187-255 7-75 (97)
56 PF04312 DUF460: Protein of un 25.0 1E+02 0.0022 27.4 3.8 42 187-257 66-107 (138)
57 COG3962 Acetolactate synthase 24.8 33 0.00072 36.5 1.0 39 342-380 216-254 (617)
58 PRK13601 putative L7Ae-like ri 24.5 2.7E+02 0.0058 22.3 6.0 53 190-252 17-69 (82)
59 PLN03034 phosphoglycerate kina 23.3 7.4E+02 0.016 26.8 10.6 148 183-371 152-306 (481)
60 TIGR00253 RNA_bind_YhbY putati 23.3 4E+02 0.0088 22.0 6.9 67 187-255 6-74 (95)
61 PLN02282 phosphoglycerate kina 22.8 9.1E+02 0.02 25.4 12.2 150 182-372 76-232 (401)
62 PRK13602 putative ribosomal pr 21.5 2.1E+02 0.0045 22.8 4.8 53 190-252 20-72 (82)
63 PRK09932 glycerate kinase II; 20.4 2.7E+02 0.0059 29.0 6.6 37 331-367 212-250 (381)
No 1
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=4.2e-97 Score=790.85 Aligned_cols=456 Identities=38% Similarity=0.541 Sum_probs=435.4
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012481 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (462)
Q Consensus 5 ~~~~lk~~~~~~p~~~~~~~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~i~~G~~~a~~~~~~~ 83 (462)
..+|||+|+++||++++. ..+++++|++||+++||||||+|+|+++||+++.++++ |+||..|++||++|.+.++++
T Consensus 52 G~tIlk~i~~~hp~~~~~--akll~e~a~~qd~e~GDGTTtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~ 129 (542)
T PRK00013 52 GVTVAKEIELEDPFENMG--AQLVKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEE 129 (542)
T ss_pred HHHHHHHccCCCchhhHH--HHHHHHHHHhcCcccCCccchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999976644 66779999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCcceeEecCCCccceeEEEeeEEEeccccCCcccccccc
Q 012481 84 LDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNK 163 (462)
Q Consensus 84 L~~~~~~v~~~~~l~~vA~ts~~~~~~l~~li~~a~~~vg~~~~I~v~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~ 163 (462)
|+++++|+++.++|.++|++|+++++.+++++++|+..++.++.|.|+.+++..+++++++|++|++||.+|||.+++++
T Consensus 130 L~~~a~~~~~~~~l~~va~ts~~~~~~ls~lv~~Av~~v~~~g~i~i~~~~~~~~~~~~v~G~~~~~g~~~~~~~~~~~~ 209 (542)
T PRK00013 130 LKKISKPVEDKEEIAQVATISANGDEEIGKLIAEAMEKVGKEGVITVEESKGFETELEVVEGMQFDRGYLSPYFVTDPEK 209 (542)
T ss_pred HHHhccCCCCHHHHHHHHHhcccchHHHHHHHHHHHHHhCcCCcEEEEEcCCCCceEEEEEeEEecCCcccccccccccC
Confidence 99999999888899999999998899999999999999998888999877777789999999999999999999998888
Q ss_pred ceeeecCceEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCcchhhHhhHHhhccCCCCcEEEEeecCcchhhhhhHH
Q 012481 164 KECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIME 243 (462)
Q Consensus 164 ~~~~l~~~~Il~~d~~i~~~~~i~~~le~i~~~g~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le 243 (462)
++..++||+|+++|.+|++++++.++++++.++|+||||++++|+++++++|..|+++|.++|++||+|+||+.|+++|+
T Consensus 210 ~~~~~~n~~Ilv~d~~i~~~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~~~r~~~l~ 289 (542)
T PRK00013 210 MEAELENPYILITDKKISNIQDLLPVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRRKAMLE 289 (542)
T ss_pred CeEEEecCEEEEEcCccCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCCcccchhhhHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCEEecCCCCCCccCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhccc----HHHHHHHh
Q 012481 244 DLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLA 319 (462)
Q Consensus 244 dla~~tG~~i~~~~~~~~~~~~~~~~LG~a~~v~i~~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s----~~l~~Rl~ 319 (462)
|||++|||++++++.+.+++++++++||+|+.|+++++++++++++++++.+..|+++|+++++++.+ ++|+|||+
T Consensus 290 ~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eRi~ 369 (542)
T PRK00013 290 DIAILTGGTVISEELGLKLEDATLEDLGQAKKVVVTKDNTTIVDGAGDKEAIKARVAQIKAQIEETTSDYDREKLQERLA 369 (542)
T ss_pred HHHHHcCCEEecccccCCcccCCHHHCCeeeEEEEecCEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 99999999999987777899999999999999999999999999999999999999999999998877 99999999
Q ss_pred hhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcCCcCChhHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH
Q 012481 320 KLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNALKMA 399 (462)
Q Consensus 320 ~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~a~~~gvVpGGGa~el~~s~~L~~~~~~~~~~~~gi~~~a~AL~~~ 399 (462)
||+|+.+||+|||+|+++++|++|+++||+|++|+++++|+|||||++|+++|++|+++...++++|+|+++|++||+.|
T Consensus 370 ~l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk~al~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~Al~~i 449 (542)
T PRK00013 370 KLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGIVPGGGVALLRAAPALEALKGLNGDEATGINIVLRALEAP 449 (542)
T ss_pred HhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998334899999999999999999
Q ss_pred HHHHHHhcCCChHHH-HHHHhcCCCCccccccC----CchhcCCccccccHHHHHHHHHHHHHHHhcC
Q 012481 400 AYLIASNAGVDGSVI-DKLLEQDSSDLGYNPAR----DMFKCGDVDPLKHVPSEFAKATSMISLKNAI 462 (462)
Q Consensus 400 ~~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~----dm~~~gI~dP~~v~~~al~~A~~~A~~lL~i 462 (462)
|++||+|||+|+.++ .+|++.+++++|||+.+ ||++.|||||+.||+++|+.|+++|++||+|
T Consensus 450 p~~La~NaG~d~~~vl~~l~~~~~~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~i 517 (542)
T PRK00013 450 LRQIAENAGLEGSVVVEKVKNGKGKGYGYNAATGEYVDMIEAGIIDPTKVTRSALQNAASVAGLLLTT 517 (542)
T ss_pred HHHHHHHcCCCHHHHHHHHHhhcCCCEeEeCCCCceeehhhccCeecHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 99987556789999987 9999999999999999999999999999986
No 2
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.9e-96 Score=785.87 Aligned_cols=455 Identities=40% Similarity=0.564 Sum_probs=433.7
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012481 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (462)
Q Consensus 5 ~~~~lk~~~~~~p~~~~~~~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~i~~G~~~a~~~~~~~ 83 (462)
..+|||+|+++||...+. ..+++++|++||+++||||||+|+||++||+++.++++ |+||..|++||++|.+.++++
T Consensus 52 GaTIlk~i~~~hp~~~~~--a~ll~~~a~~qd~e~GDGTTtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~ 129 (542)
T PRK12849 52 GVSIAKEIELEDPFENLG--AQLVKEVASKTNDVAGDGTTTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEE 129 (542)
T ss_pred HHHHHHHcccCCccHhHH--HHHHHHHHHhcCCccCCCccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH
Confidence 468999999999954432 44568999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCcceeEecCCCccceeEEEeeEEEeccccCCcccccccc
Q 012481 84 LDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNK 163 (462)
Q Consensus 84 L~~~~~~v~~~~~l~~vA~ts~~~~~~l~~li~~a~~~vg~~~~I~v~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~ 163 (462)
|+++++|+++.++|.++|+||+++++.+++++++|+..++.++.|.++.|++..|++++++|++|+++|.+|||.++.++
T Consensus 130 L~~~s~~~~~~~~l~~va~ts~~~~~~l~~lv~~Av~~v~~~g~i~i~~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~ 209 (542)
T PRK12849 130 LKALARPVSGSEEIAQVATISANGDEEIGELIAEAMEKVGKDGVITVEESKTLETELEVTEGMQFDRGYLSPYFVTDPER 209 (542)
T ss_pred HHHhccCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHHhccCCcEeEEeCCCcceeEEEEEeEEEecCcccCcccccccC
Confidence 99999999888899999999999899999999999999998888899999888888999999999999999999998888
Q ss_pred ceeeecCceEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCcchhhHhhHHhhccCCCCcEEEEeecCcchhhhhhHH
Q 012481 164 KECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIME 243 (462)
Q Consensus 164 ~~~~l~~~~Il~~d~~i~~~~~i~~~le~i~~~g~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le 243 (462)
++.+++||+|+++|.+|++++++.++++++.++|+||||++++|+++++++|..|+++|.++|++||+|+||++|+++|+
T Consensus 210 ~~~~~~n~~Ili~d~~i~~~~~~~~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~~r~~~l~ 289 (542)
T PRK12849 210 MEAVLEDPLILLTDKKISSLQDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLE 289 (542)
T ss_pred ceEEeeCcEEEeecCCcCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccchhHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCEEecCCCCCCccCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhccc----HHHHHHHh
Q 012481 244 DLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLA 319 (462)
Q Consensus 244 dla~~tG~~i~~~~~~~~~~~~~~~~LG~a~~v~i~~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s----~~l~~Rl~ 319 (462)
|||.+|||++++++.+.+++++++++||+|++|++++++++++++++++++++.|+++|+++++++++ ++|+||++
T Consensus 290 ~ia~~tGa~~v~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~~ 369 (542)
T PRK12849 290 DIAILTGGTVISEDLGLKLEEVTLDDLGRAKRVTITKDNTTIVDGAGDKEAIEARVAQIRRQIEETTSDYDREKLQERLA 369 (542)
T ss_pred HHHHHhCCEEecccccCCcccCCHHHCceeeEEEEeeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 99999999999988777899999999999999999999999999999999999999999999998876 99999999
Q ss_pred hhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcCCcCChhHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH
Q 012481 320 KLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNALKMA 399 (462)
Q Consensus 320 ~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~a~~~gvVpGGGa~el~~s~~L~~~~~~~~~~~~gi~~~a~AL~~~ 399 (462)
||+|+++||+|||+|+++++|++|+++||+|++|+++++|||||||++|+++|+.|++++..++++|+|+++|++||+.|
T Consensus 370 ~l~~~~~TI~irG~t~~~l~E~er~i~DAl~~~~~a~~~g~VpGGGa~e~~ls~~L~~~~~~~g~~~~~i~~~a~Al~~i 449 (542)
T PRK12849 370 KLAGGVAVIKVGAATEVELKERKDRVEDALNATRAAVEEGIVPGGGVALLRAAKALDELAGLNGDQAAGVEIVRRALEAP 449 (542)
T ss_pred HhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcCeecCCCHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999844899999999999999999
Q ss_pred HHHHHHhcCCChHHH-HHHHhcCCCCccccccC----CchhcCCccccccHHHHHHHHHHHHHHHhcC
Q 012481 400 AYLIASNAGVDGSVI-DKLLEQDSSDLGYNPAR----DMFKCGDVDPLKHVPSEFAKATSMISLKNAI 462 (462)
Q Consensus 400 ~~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~----dm~~~gI~dP~~v~~~al~~A~~~A~~lL~i 462 (462)
|++||+|||+|+.++ .+|++.+ +++|||+.+ ||++.|||||+.||.++|+.|+++|++||+|
T Consensus 450 p~~La~NaG~d~~~vi~~L~~~~-~~~G~d~~~g~~~d~~~~GV~Dp~~vk~~al~~A~e~A~~iL~i 516 (542)
T PRK12849 450 LRQIAENAGLDGSVVVAKVLELE-DGFGFNAATGEYGDLIAAGIIDPVKVTRSALQNAASVAGLLLTT 516 (542)
T ss_pred HHHHHHHCCCCHHHHHHHHHhhC-CCcceeCCCCccccHHhccCccCHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999 9998754 679999987 9999999999999999999999999999985
No 3
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=2.2e-96 Score=787.60 Aligned_cols=452 Identities=37% Similarity=0.565 Sum_probs=432.5
Q ss_pred HHHHhhhcccc----CccccccchhhhhhhhhhhhcccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHH
Q 012481 5 ACSLASRVRLI----NTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADA 79 (462)
Q Consensus 5 ~~~~lk~~~~~----~p~~~~~~~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~i~~G~~~a~~~ 79 (462)
..+|||+|++. ||.++ +++++|++||+++||||||+|+||++||+++.++++ |+||+.|++||++|.+.
T Consensus 53 G~TIlk~i~~~~~~~~p~ak------ll~e~a~~q~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~ 126 (545)
T PRK12852 53 GVTVAKEIELEDKFENMGAQ------MVREVASKTNDLAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAA 126 (545)
T ss_pred HHHHHHHccCCCcccChHHH------HHHHHHhhcCceecCCcchHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 57899999996 66666 448999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCcceeEecCCCccceeEEEeeEEEeccccCCcccc
Q 012481 80 VVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFT 159 (462)
Q Consensus 80 ~~~~L~~~~~~v~~~~~l~~vA~ts~~~~~~l~~li~~a~~~vg~~~~I~v~~g~~~~d~~~~~~G~~~~~g~~~~~~~~ 159 (462)
++++|+++++|+++.+++.++|++|+++++.+++++++|+.+++.++.|+++.|++..+++++++|++|++||.+|||++
T Consensus 127 ~l~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~~li~eA~~~vg~~g~i~v~~g~~~~~~~~~v~G~~~~~g~~~p~~v~ 206 (545)
T PRK12852 127 VVKDIEKRAKPVASSAEIAQVGTISANGDAAIGKMIAQAMQKVGNEGVITVEENKSLETEVDIVEGMKFDRGYLSPYFVT 206 (545)
T ss_pred HHHHHHHhcccCCCHHHHHHHHhhhcCChHHHHHHHHHHHHHhccCCceeeecCCCcceEEEEEEeEEecCCccCCcccc
Confidence 99999999999987778999999999888999999999999999989999998887778999999999999999999999
Q ss_pred ccccceeeecCceEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCcchhhHhhHHhhccCCCCcEEEEeecCcchhhh
Q 012481 160 HKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRK 239 (462)
Q Consensus 160 ~~~~~~~~l~~~~Il~~d~~i~~~~~i~~~le~i~~~g~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~ 239 (462)
++++++.++++|+|+++|.+++++++++|+++.+.++|+||||++++|+++++++|..|+.+|.++|++||+|+||+.|+
T Consensus 207 ~~~~~~~~l~n~~Ili~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~~~~r~ 286 (545)
T PRK12852 207 NAEKMTVELDDAYILLHEKKLSGLQAMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRK 286 (545)
T ss_pred ccccceEEecCceEEEecCccCCHHHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCCcccchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhCCEEecCCCCCCccCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhccc----HHHH
Q 012481 240 AIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLK 315 (462)
Q Consensus 240 ~~ledla~~tG~~i~~~~~~~~~~~~~~~~LG~a~~v~i~~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s----~~l~ 315 (462)
++|+|||++|||++++++.+.+++++++++||+|++|+++++++++++++++++.++.|+++|+.+++++.+ ++|+
T Consensus 287 ~~l~~ia~~tGa~~i~~~~~~~l~~~~~~~lG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~ 366 (545)
T PRK12852 287 AMLEDIAILTGGQLISEDLGIKLENVTLKMLGRAKKVVIDKENTTIVNGAGKKADIEARVGQIKAQIEETTSDYDREKLQ 366 (545)
T ss_pred hHHHHHHHhcCCEEEecCcCCCcCCCCHHHCCCCcEEEEEccEEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 999999999999999987777899999999999999999999999999999999999999999999998776 9999
Q ss_pred HHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcCCcCChhHHHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 012481 316 DRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNA 395 (462)
Q Consensus 316 ~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~a~~~gvVpGGGa~el~~s~~L~~~~~~~~~~~~gi~~~a~A 395 (462)
|||+||+|+++||+|||+|+++++|++|+++||+|++|+++++|||||||++|+++|+.|++++..++++|+|+++|++|
T Consensus 367 ~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~q~~i~~~a~A 446 (545)
T PRK12852 367 ERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEGIVPGGGVALLRAKKAVGRINNDNADVQAGINIVLKA 446 (545)
T ss_pred HHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcCchHHHHHHHHHHHHhhcCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999876678899999999999
Q ss_pred HHHHHHHHHHhcCCChHHH-HHHHhcCCCCccccccC----CchhcCCccccccHHHHHHHHHHHHHHHhcC
Q 012481 396 LKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPAR----DMFKCGDVDPLKHVPSEFAKATSMISLKNAI 462 (462)
Q Consensus 396 L~~~~~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~----dm~~~gI~dP~~v~~~al~~A~~~A~~lL~i 462 (462)
|+.||++||+|||+|+.++ .+|++.+++++|||+.+ ||++.|||||+.||+++|++|+++|++||+|
T Consensus 447 L~~ip~~La~NaG~d~~~vl~~l~~~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~i 518 (545)
T PRK12852 447 LEAPIRQIAENAGVEGSIVVGKILENKSETFGFDAQTEEYVDMVAKGIIDPAKVVRTALQDAASVAGLLVTT 518 (545)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhhcCCCeeEeCcCCCcccHHhCcCCcChHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999 99987666789999987 9999999999999999999999999999986
No 4
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=3.1e-96 Score=781.89 Aligned_cols=455 Identities=41% Similarity=0.591 Sum_probs=435.8
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012481 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (462)
Q Consensus 5 ~~~~lk~~~~~~p~~~~~~~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~i~~G~~~a~~~~~~~ 83 (462)
..+|||+|+++||.+++. ..+++++|++||+++||||||+++||++||+++.++++ |+||..|++||+.|.+.++++
T Consensus 50 G~tIlk~i~~~hp~~~~~--a~ll~~~a~~qd~e~GDGTTtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~ 127 (520)
T cd03344 50 GVTVAKEIELEDPFENMG--AQLVKEVASKTNDVAGDGTTTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEE 127 (520)
T ss_pred HHHHHHHcccCCcchhHH--HHHHHHHHhhhccccCCCcchHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHH
Confidence 468999999999977744 66779999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCcceeEecCCCccceeEEEeeEEEeccccCCcccccccc
Q 012481 84 LDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNK 163 (462)
Q Consensus 84 L~~~~~~v~~~~~l~~vA~ts~~~~~~l~~li~~a~~~vg~~~~I~v~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~ 163 (462)
|+++++|+++.++|.++|+||+++++.+++++++|+..++.++.|.+++|++..|++++++|++|++||.+|+|.++|++
T Consensus 128 L~~~~~~i~~~~~l~~va~ts~~~~~~l~~lv~~A~~~v~~~~~i~v~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~ 207 (520)
T cd03344 128 LKKLSKPVKTKEEIAQVATISANGDEEIGELIAEAMEKVGKDGVITVEEGKTLETELEVVEGMQFDRGYLSPYFVTDPEK 207 (520)
T ss_pred HHHhccCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHHhccCCcEEEEeCCCcceeEEEEeeEEecCCCCCCccccCccc
Confidence 99999999888999999999999999999999999999998888999999988877999999999999999999998888
Q ss_pred ceeeecCceEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCcchhhHhhHHhhccCCCCcEEEEeecCcchhhhhhHH
Q 012481 164 KECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIME 243 (462)
Q Consensus 164 ~~~~l~~~~Il~~d~~i~~~~~i~~~le~i~~~g~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le 243 (462)
++.+++||+|+++|.++++++++.++++++.++|+||||++++|+++++++|..|+++|.+++++||+|++|+.++++|+
T Consensus 208 ~~~~~~n~~Ili~d~~l~~~~~l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~~~~~~~~l~ 287 (520)
T cd03344 208 MEVELENPYILLTDKKISSIQELLPILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLE 287 (520)
T ss_pred CeEEeeCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCCCcccHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCEEecCCCCCCccCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhccc----HHHHHHHh
Q 012481 244 DLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLA 319 (462)
Q Consensus 244 dla~~tG~~i~~~~~~~~~~~~~~~~LG~a~~v~i~~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s----~~l~~Rl~ 319 (462)
|||++|||++++++++..++++++++||+|++|++++++++++++++++++++.|+++|+++++++++ ++|+||++
T Consensus 288 ~la~~tGa~~~~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~ 367 (520)
T cd03344 288 DIAILTGGTVISEELGLKLEDVTLEDLGRAKKVVVTKDDTTIIGGAGDKAAIKARIAQIRKQIEETTSDYDKEKLQERLA 367 (520)
T ss_pred HHHHHhCCEEecccccCCcccCCHHHCCcceEEEEeeceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999999987777899999999999999999999999999999999999999999999998876 99999999
Q ss_pred hhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcCCcCChhHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH
Q 012481 320 KLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNALKMA 399 (462)
Q Consensus 320 ~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~a~~~gvVpGGGa~el~~s~~L~~~~~~~~~~~~gi~~~a~AL~~~ 399 (462)
||+|++|||+|||+|+++++|++|+++||+|++|+++++|+|||||++|+++|++|++++..++++|+|+++|++||+.|
T Consensus 368 ~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~~k~a~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~~a~Al~~i 447 (520)
T cd03344 368 KLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEGIVPGGGVALLRASPALDKLKALNGDEKLGIEIVRRALEAP 447 (520)
T ss_pred HhcCCeEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCcHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998777899999999999999999
Q ss_pred HHHHHHhcCCChHHH-HHHHhcCCCCccccccC----CchhcCCccccccHHHHHHHHHHHHHHHhcC
Q 012481 400 AYLIASNAGVDGSVI-DKLLEQDSSDLGYNPAR----DMFKCGDVDPLKHVPSEFAKATSMISLKNAI 462 (462)
Q Consensus 400 ~~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~----dm~~~gI~dP~~v~~~al~~A~~~A~~lL~i 462 (462)
|++||+|||+|+.++ ++|++.+. ++|||+.+ ||++.|||||+.||.++|++|+++|++||+|
T Consensus 448 p~~La~NaG~d~~~vi~~l~~~~~-~~G~d~~~g~~~d~~~~gV~Dp~~vk~~~l~~A~~~a~~iL~i 514 (520)
T cd03344 448 LRQIAENAGVDGSVVVEKVLESPD-GFGYDAATGEYVDMIEAGIIDPTKVVRSALQNAASVASLLLTT 514 (520)
T ss_pred HHHHHHhcCCCHHHHHHHHHhhcC-CEeEECCCCcccchHhccCeecHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999 99987654 89999986 9999999999999999999999999999986
No 5
>PRK14104 chaperonin GroEL; Provisional
Probab=100.00 E-value=1.9e-96 Score=786.45 Aligned_cols=452 Identities=38% Similarity=0.571 Sum_probs=433.7
Q ss_pred HHHHhhhcccc----CccccccchhhhhhhhhhhhcccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHH
Q 012481 5 ACSLASRVRLI----NTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADA 79 (462)
Q Consensus 5 ~~~~lk~~~~~----~p~~~~~~~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~i~~G~~~a~~~ 79 (462)
..+|||+|++. ||.++++ +++|++||+++||||||+||||++||+++.++++ |+||+.|++||++|.+.
T Consensus 53 G~tIlk~i~~~d~~~~pgakll------~e~a~~qd~e~GDGTTTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~ 126 (546)
T PRK14104 53 GVTVAKEIELEDKFENMGAQMV------REVASKSADAAGDGTTTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEA 126 (546)
T ss_pred HHHHHHHhcCCCcccChHHHHH------HHHHHhhcccccCcccHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHH
Confidence 46899999999 8888855 8999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCcceeEecCCCccceeEEEeeEEEeccccCCcccc
Q 012481 80 VVRNLDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFT 159 (462)
Q Consensus 80 ~~~~L~~~~~~v~~~~~l~~vA~ts~~~~~~l~~li~~a~~~vg~~~~I~v~~g~~~~d~~~~~~G~~~~~g~~~~~~~~ 159 (462)
++++|+++++|+++.+++.++|++|+++++.+++++++|+.++|.+|.|.++.+++.++++++++|++|++||.+|||.+
T Consensus 127 ~~~~L~~~a~~v~~~~~l~~va~~s~~~d~~i~~lv~~Av~~vg~~g~i~v~~~~~~~~~~~~~~G~~~~~g~~~p~~~~ 206 (546)
T PRK14104 127 VVADLVKNSKKVTSNDEIAQVGTISANGDAEIGKFLADAMKKVGNEGVITVEEAKSLETELDVVEGMQFDRGYISPYFVT 206 (546)
T ss_pred HHHHHHHhcccCCCHHHHHHHHHHHhcCchHHHHHHHHHHHHhccCCceeeEecccccceEEEEEEEEEeCCCCCcchhc
Confidence 99999999999987778999999999989999999999999999999999998877778999999999999999999999
Q ss_pred ccccceeeecCceEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCcchhhHhhHHhhccCCCCcEEEEeecCcchhhh
Q 012481 160 HKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRK 239 (462)
Q Consensus 160 ~~~~~~~~l~~~~Il~~d~~i~~~~~i~~~le~i~~~g~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~ 239 (462)
+++.++.++++|+|+++|.+++++++++|+++++.++|+||||++++|+++++++|..|++++.++|+|||+|+||+.|+
T Consensus 207 ~~~~~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g~~r~ 286 (546)
T PRK14104 207 NADKMRVEMDDAYILINEKKLSSLNELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRK 286 (546)
T ss_pred CcccCceeeeCcEEEEehhhhcCHHHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCCcchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhCCEEecCCCCCCccCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhccc----HHHH
Q 012481 240 AIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLK 315 (462)
Q Consensus 240 ~~ledla~~tG~~i~~~~~~~~~~~~~~~~LG~a~~v~i~~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s----~~l~ 315 (462)
++|+|||++|||++++++.+.+++++++++||+|++|+++++++++++|+++++.++.|+++|+++++++.+ ++|+
T Consensus 287 ~~l~~ia~~tG~~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~ 366 (546)
T PRK14104 287 AMLQDIAILTGGQAISEDLGIKLENVTLQMLGRAKKVMIDKENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREKLQ 366 (546)
T ss_pred HHHHHHHHHhCCEEEecCCCCCcCcCCHHHCCceeEEEEcCCEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999999998888899999999999999999999999999999999999999999999999877 9999
Q ss_pred HHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcCCcCChhHHHHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 012481 316 DRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNA 395 (462)
Q Consensus 316 ~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~a~~~gvVpGGGa~el~~s~~L~~~~~~~~~~~~gi~~~a~A 395 (462)
|||+||+|+++||+|||+|+++++|++|+++||+|++++++++|||||||++|+++|..|+++...++++++|+++|++|
T Consensus 367 eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~~~ai~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~A 446 (546)
T PRK14104 367 ERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEGIVPGGGVALLRASEQLKGIKTKNDDQKTGVEIVRKA 446 (546)
T ss_pred HHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcCcCchHHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998855588999999999999
Q ss_pred HHHHHHHHHHhcCCChHHH-HHHHhcCCCCccccccC----CchhcCCccccccHHHHHHHHHHHHHHHhcC
Q 012481 396 LKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPAR----DMFKCGDVDPLKHVPSEFAKATSMISLKNAI 462 (462)
Q Consensus 396 L~~~~~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~----dm~~~gI~dP~~v~~~al~~A~~~A~~lL~i 462 (462)
|+.||++||+|||+|+.++ .+|++.+++++|||+.+ ||++.|||||+.||+++|++|+++|++||+|
T Consensus 447 l~~ip~~La~NaG~d~~~v~~~l~~~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~a~~iL~i 518 (546)
T PRK14104 447 LSAPARQIAINAGEDGSVIVGKILEKEQYSYGFDSQTGEYGNLVSKGIIDPTKVVRTAIQNAASVAALLITT 518 (546)
T ss_pred HHhhHHHHHHhCCCCHHHHHHHHHhcCCCcEeEeCCCCceeehHhcCCEEcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 99976556779999987 9999999999999999999999999999985
No 6
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=100.00 E-value=6.2e-96 Score=780.76 Aligned_cols=454 Identities=38% Similarity=0.548 Sum_probs=433.3
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012481 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (462)
Q Consensus 5 ~~~~lk~~~~~~p~~~~~~~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~i~~G~~~a~~~~~~~ 83 (462)
..+|||+|++.||++++. +.+++++|++||+++||||||+++||++||+++.++++ |+||..|++||++|.+.++++
T Consensus 51 G~tIlk~i~~~hp~~~~~--akll~~~a~~qd~e~GDGTTtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~ 128 (524)
T TIGR02348 51 GVTVAKEIELEDKFENMG--AQLVKEVASKTNDVAGDGTTTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAAVEE 128 (524)
T ss_pred HHHHHHHccCCChhhHHH--HHHHHHHHHccCceeCCCcchHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999976654 66779999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCcceeEecCCCccceeEEEeeEEEeccccCCcccccccc
Q 012481 84 LDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNK 163 (462)
Q Consensus 84 L~~~~~~v~~~~~l~~vA~ts~~~~~~l~~li~~a~~~vg~~~~I~v~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~ 163 (462)
|+++++|+++.+++.++|++|+++++.+++++++|+.+++.++.|.|+.|++..|++++++|++|+++|.+|||.+++++
T Consensus 129 L~~~s~~~~~~~~l~~va~ts~~~~~~l~~lv~~A~~~v~~~~~i~v~~g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~ 208 (524)
T TIGR02348 129 LKKLSKPVKGKKEIAQVATISANNDEEIGSLIAEAMEKVGKDGVITVEESKSLETELEVVEGMQFDRGYISPYFVTDAEK 208 (524)
T ss_pred HHHhccCCCCHHHHHHHHHHhccChHHHHHHHHHHHHHhCcCCcEeeecCCCccccEEEEEeEEEcCCCCCcccccCccC
Confidence 99999999888899999999999889999999999999998888999888888789999999999999999999998889
Q ss_pred ceeeecCceEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCcchhhHhhHHhhccCCCCcEEEEeecCcchhhhhhHH
Q 012481 164 KECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIME 243 (462)
Q Consensus 164 ~~~~l~~~~Il~~d~~i~~~~~i~~~le~i~~~g~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le 243 (462)
++..++||+|+++|.++++++++.++++++.++|+||||++++|+++++++|..|+++|.++|++||+|+||++|+++|+
T Consensus 209 ~~~~~~n~~Ili~d~~i~~~~~i~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~~~~r~~~l~ 288 (524)
T TIGR02348 209 MEVELENPYILITDKKISNIKDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRRKAMLE 288 (524)
T ss_pred CeEEeeCceeeeccCCcCCHHHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhcccccceEEEECCCccchhhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999989999
Q ss_pred HHHHHhCCEEecCCCCCCccCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhccc----HHHHHHHh
Q 012481 244 DLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLA 319 (462)
Q Consensus 244 dla~~tG~~i~~~~~~~~~~~~~~~~LG~a~~v~i~~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s----~~l~~Rl~ 319 (462)
|||++|||++++++.+++++++++++||+|++|++.++++++++++++++.+..|+..|+++++++.+ ++|+|||+
T Consensus 289 ~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~~~~ri~~l~~~~~~~~~~~~~~~l~eR~~ 368 (524)
T TIGR02348 289 DIAILTGGQVISEELGLKLEEVTLDDLGKAKKVTVDKDNTTIVEGAGDKAAIKARVAQIKAQIEETTSDYDREKLQERLA 368 (524)
T ss_pred HHHHHhCCEEecccccCCcCcCCHHHCCCceEEEEeecEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999999987777899999999999999999999999999999999999999999999998876 99999999
Q ss_pred hhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcCCcCChhHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHH
Q 012481 320 KLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKM 398 (462)
Q Consensus 320 ~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~a~~~gvVpGGGa~el~~s~~L~~~~~~-~~~~~~gi~~~a~AL~~ 398 (462)
||+|+++||+|||+|+++++|++|+++||+|++|+++++|||||||++|+++|+.|++ ... ++++|+|+++|++||+.
T Consensus 369 ~l~~~~~tI~irG~t~~~l~E~er~i~Dal~~~r~a~~~g~VpGGGa~e~~~s~~L~~-~~~~~~~~~~~~~~~a~AL~~ 447 (524)
T TIGR02348 369 KLAGGVAVIKVGAATETEMKEKKLRVEDALNATRAAVEEGIVPGGGVALLRAAAALEG-LKGDNEDEAIGIDIVKRALEA 447 (524)
T ss_pred HhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcHHHHHHHHHHHH-hccCChHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998 444 88999999999999999
Q ss_pred HHHHHHHhcCCChHHH-HHHHhcCCCCccccccC----CchhcCCccccccHHHHHHHHHHHHHHHhcC
Q 012481 399 AAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPAR----DMFKCGDVDPLKHVPSEFAKATSMISLKNAI 462 (462)
Q Consensus 399 ~~~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~----dm~~~gI~dP~~v~~~al~~A~~~A~~lL~i 462 (462)
||++||+|||+|+.++ ++|++. +.++|||+.+ ||++.|||||+.||+++|++|+++|++||+|
T Consensus 448 ip~~La~NaG~d~~~v~~~l~~~-~~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~i 515 (524)
T TIGR02348 448 PLRQIAENAGKDGAVVAEKVKES-KGNFGFNAATGEYEDLVEAGIIDPTKVTRSALQNAASIAGLLLTT 515 (524)
T ss_pred HHHHHHHhCCCCHHHHHHHHHhc-CCCeeEeCcCCcccchhhccCEEcHHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999 999875 3358999976 9999999999999999999999999999986
No 7
>PTZ00114 Heat shock protein 60; Provisional
Probab=100.00 E-value=6.1e-96 Score=785.14 Aligned_cols=456 Identities=41% Similarity=0.593 Sum_probs=433.1
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012481 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (462)
Q Consensus 5 ~~~~lk~~~~~~p~~~~~~~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~i~~G~~~a~~~~~~~ 83 (462)
..+|+|+|++.||.+.+. ..+++++|++||+++||||||+||||++||+++.++++ |+||..|++||++|.+.++++
T Consensus 64 G~TIlk~i~~~~p~~~~~--a~ll~~~a~~qd~evGDGTTtvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~~~~~ 141 (555)
T PTZ00114 64 GVTVAKAIEFSDRFENVG--AQLIRQVASKTNDKAGDGTTTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLES 141 (555)
T ss_pred hHHHHHhcCcCCcchhHH--HHHHHHHHHhhccccCCcccHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHH
Confidence 468999999999954433 45669999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCcceeEecCCCccceeEEEeeEEEeccccCCcccccccc
Q 012481 84 LDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNK 163 (462)
Q Consensus 84 L~~~~~~v~~~~~l~~vA~ts~~~~~~l~~li~~a~~~vg~~~~I~v~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~ 163 (462)
|+++++|+++.++|.++|+||+++++.+++++++|+.+++.+|.|.+++|++..|++++++|++|+++|.+|||.+++++
T Consensus 142 L~~~s~~v~~~~~l~~va~ts~~~~~~l~~li~eAv~~vg~~g~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~ 221 (555)
T PTZ00114 142 LKEQSRPVKTKEDILNVATISANGDVEIGSLIADAMDKVGKDGTITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKT 221 (555)
T ss_pred HHHhccCCCCHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCcEEEcCCCCccceEEEEEEEEEecccccccccccccc
Confidence 99999999888899999999998889999999999999998888999999998887799999999999999999999999
Q ss_pred ceeeecCceEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCcchhhHhhHHhhccCCCCcEEEEeecCcchhhhhhHH
Q 012481 164 KECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIME 243 (462)
Q Consensus 164 ~~~~l~~~~Il~~d~~i~~~~~i~~~le~i~~~g~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le 243 (462)
++.++++|+|+++|.+|++++++.|+++++.++|+||+|++++|+++++++|..|+++|.++|++||+|++|+.++++|+
T Consensus 222 ~~~~l~~~~Ili~d~~L~~~~~i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~g~~~~~~l~ 301 (555)
T PTZ00114 222 QKVELENPLILVTDKKISSIQSILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGDNRKDILQ 301 (555)
T ss_pred CeEEecCCEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecCCCCcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCEEecCC-CCCCccCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhccc----HHHHHHH
Q 012481 244 DLAILTGGQVLTGG-SGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRL 318 (462)
Q Consensus 244 dla~~tG~~i~~~~-~~~~~~~~~~~~LG~a~~v~i~~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s----~~l~~Rl 318 (462)
|||++|||+++++. .+..++++++++||+|++|+++++++++++++++++.|+.|+.+|+.++++.++ ++|+|||
T Consensus 302 ~la~~tG~~~i~~~~~~~~l~~~~~~~LG~a~~v~~~~~~~~~~~~~~~~~~i~~r~~~l~~~~~~~~~~~~~~~l~eR~ 381 (555)
T PTZ00114 302 DIAVLTGATVVSEDNVGLKLDDFDPSMLGSAKKVTVTKDETVILTGGGDKAEIKERVELLRSQIERTTSEYDKEKLKERL 381 (555)
T ss_pred HHHHHhCCEEecccccccCcccCCHHHcCCCceEEEEeceEEEEeCCCcHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999987 677789999999999999999999999999999999999999999999988765 9999999
Q ss_pred hhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcCCcCChhHHHHHHHHHHHHhcC--C-ChhHHHHHHHHHHH
Q 012481 319 AKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQT--T-NSDQKIGVQIVQNA 395 (462)
Q Consensus 319 ~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~a~~~gvVpGGGa~el~~s~~L~~~~~--~-~~~~~~gi~~~a~A 395 (462)
+||+|+++||+|||+|+++++|++|+++||+|++|+++++|||||||++|+++|+.|++++. . ++++|+|+++|++|
T Consensus 382 ~~l~~~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~i~~~a~A 461 (555)
T PTZ00114 382 AKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVEEGIVPGGGVALLRASKLLDKLEEDNELTPDQRTGVKIVRNA 461 (555)
T ss_pred HhcCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999874 3 78999999999999
Q ss_pred HHHHHHHHHHhcCCChHHH-HHHHhcCCCCccccccC----CchhcCCccccccHHHHHHHHHHHHHHHhcC
Q 012481 396 LKMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPAR----DMFKCGDVDPLKHVPSEFAKATSMISLKNAI 462 (462)
Q Consensus 396 L~~~~~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~----dm~~~gI~dP~~v~~~al~~A~~~A~~lL~i 462 (462)
|+.||++||+|||+|+.++ ++|++.+++++|||+.+ ||++.|||||+.||+++|++|+++|++||+|
T Consensus 462 L~~ip~~La~NaG~d~~~v~~~l~~~~~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~~~A~~iL~i 533 (555)
T PTZ00114 462 LRLPTKQIAENAGVEGAVVVEKILEKKDPSFGYDAQTGEYVNMFEAGIIDPTKVVRSALVDAASVASLMLTT 533 (555)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhcCCCCEeEeCCCCcEeeHHhCCCEeCHHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999 99977556789999987 9999999999999999999999999999985
No 8
>CHL00093 groEL chaperonin GroEL
Probab=100.00 E-value=6.6e-96 Score=781.39 Aligned_cols=454 Identities=34% Similarity=0.513 Sum_probs=433.3
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012481 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (462)
Q Consensus 5 ~~~~lk~~~~~~p~~~~~~~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~i~~G~~~a~~~~~~~ 83 (462)
..+|||+|++.||+++++ +.+++++|.+|++++||||||+||||++||++|.++++ |+||+.|++||++|.+.+++.
T Consensus 52 G~tIlk~i~~~hp~a~~g--~~li~~~a~~~~~e~GDGTTtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~ 129 (529)
T CHL00093 52 GVTIAKEIELEDHIENTG--VALIRQAASKTNDVAGDGTTTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQ 129 (529)
T ss_pred HHHHHHHccCcCHHHHHH--HHHHHHHHHhcCceecCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 579999999999999988 88999999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCcceeEecCCCccceeEEEeeEEEeccccCCcccccccc
Q 012481 84 LDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNK 163 (462)
Q Consensus 84 L~~~~~~v~~~~~l~~vA~ts~~~~~~l~~li~~a~~~vg~~~~I~v~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~ 163 (462)
|++++.|+++.++|.+||++|+++++.+++++++|+.+++.+|.|+++.|++..+++++++|++|++||.+|||.+++++
T Consensus 130 L~~~s~~v~d~~~L~~VA~ts~~~~~~l~~lv~eAv~~vg~~g~i~~~~g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~ 209 (529)
T CHL00093 130 IAEYARPVEDIQAITQVASISAGNDEEVGSMIADAIEKVGREGVISLEEGKSTVTELEITEGMRFEKGFISPYFVTDTER 209 (529)
T ss_pred HHHhCCCCCCHHHHHHHHHHhccChHHHHHHHHHHHHHhccCCceeecCCCccceeeEEEeeEEecCccCcCccccCCcc
Confidence 99999999888899999999999999999999999999998898999887777788999999999999999999999999
Q ss_pred ceeeecCceEEEeccccCCH-HHHHHHHHHHHHcCCCEEEEecCcchhhHhhHHhhccCCCCcEEEEeecCcchhhhhhH
Q 012481 164 KECVLDGALVLIYDTKISNS-NVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIM 242 (462)
Q Consensus 164 ~~~~l~~~~Il~~d~~i~~~-~~i~~~le~i~~~g~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~l 242 (462)
+..+++||+|+++|.+++.. .++.++++.+.++|+||+|++++|+++++++|+.|+.+|.++|++||+|++|++|+++|
T Consensus 210 ~~~~l~n~~Ili~d~~le~~~~~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~~~~k~~l 289 (529)
T CHL00093 210 MEVVQENPYILLTDKKITLVQQDLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRRKAML 289 (529)
T ss_pred ceEEecCceehhhcCCCCchHHHHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCCCcchHHHH
Confidence 99999999999999999987 78999999999999999999999999999999999999989999999999999999999
Q ss_pred HHHHHHhCCEEecCCCCCCccCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhccc----HHHHHHH
Q 012481 243 EDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRL 318 (462)
Q Consensus 243 edla~~tG~~i~~~~~~~~~~~~~~~~LG~a~~v~i~~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s----~~l~~Rl 318 (462)
+|||++|||++++++.+.+++++++++||+|++|+++++++++++ .++++.+..|+..++++++.+++ ++|+|||
T Consensus 290 ~~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~eR~ 368 (529)
T CHL00093 290 EDIAILTGGQVITEDAGLSLETIQLDLLGQARRIIVTKDSTTIIA-DGNEEQVKARCEQLRKQIEIADSSYEKEKLQERL 368 (529)
T ss_pred HHHHHhhCCEEecccccCCcCCCCHHHCCcceEEEEecCEEEEEe-cCcHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHH
Confidence 999999999999988888899999999999999999999999997 56789999999999999998776 9999999
Q ss_pred hhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcCCcCChhHHHHHHHHHHHHhcC-C-ChhHHHHHHHHHHHH
Q 012481 319 AKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQT-T-NSDQKIGVQIVQNAL 396 (462)
Q Consensus 319 ~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~a~~~gvVpGGGa~el~~s~~L~~~~~-~-~~~~~~gi~~~a~AL 396 (462)
+||+|+.+||+|||+|+++++|++|+++||+|++|+++++|+|||||++|++||++|++++. . ++++|+|+++|++||
T Consensus 369 ~~l~g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~a~~~gvVpGGGa~e~~~s~~L~~~~~~~~~g~~~~~i~~~a~AL 448 (529)
T CHL00093 369 AKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEGIVPGGGATLVHLSENLKTWAKNNLKEDELIGALIVARAI 448 (529)
T ss_pred HHhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999865 4 899999999999999
Q ss_pred HHHHHHHHHhcCCChHHH-HHHHhcCCCCccccccC----CchhcCCccccccHHHHHHHHHHHHHHHhcC
Q 012481 397 KMAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPAR----DMFKCGDVDPLKHVPSEFAKATSMISLKNAI 462 (462)
Q Consensus 397 ~~~~~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~----dm~~~gI~dP~~v~~~al~~A~~~A~~lL~i 462 (462)
+.||++||+|||+|+.++ ++|++. +.++|||+.+ ||++.|||||+.||+++|++|+++|++||+|
T Consensus 449 ~~ip~~La~NaG~d~~~v~~~l~~~-~~~~G~d~~~g~~~d~~~~GI~Dp~~vk~~al~~A~e~a~~iL~i 518 (529)
T CHL00093 449 LAPLKRIAENAGKNGSVIIEKVQEQ-DFEIGYNAANNKFVNMYEAGIIDPAKVTRSALQNAASIASMILTT 518 (529)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHcc-CCCEeEECCCCcccchHhccCEEcHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 999764 4689999987 9999999999999999999999999999986
No 9
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=1.8e-95 Score=779.21 Aligned_cols=455 Identities=37% Similarity=0.544 Sum_probs=434.1
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012481 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (462)
Q Consensus 5 ~~~~lk~~~~~~p~~~~~~~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~i~~G~~~a~~~~~~~ 83 (462)
..+|||+|+++||+++++ +.+++++|++||+++||||||+|+||++||+++.++++ |+||..|++||++|.+.++++
T Consensus 53 G~tIlk~i~i~hp~~~~g--a~ll~~~a~~qd~e~GDGTTt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~ 130 (544)
T PRK12850 53 GVTVAKEIELEDKFENMG--AQMVKEVASKTNDLAGDGTTTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDE 130 (544)
T ss_pred HHHHHHHhcCCChhhhHH--HHHHHHHHhhhcchhcCCcchHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHH
Confidence 469999999999998877 77889999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCcceeEecCCCccceeEEEeeEEEeccccCCcccccccc
Q 012481 84 LDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNK 163 (462)
Q Consensus 84 L~~~~~~v~~~~~l~~vA~ts~~~~~~l~~li~~a~~~vg~~~~I~v~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~ 163 (462)
|++++.|+++.++|.++|++|+++++.+++++++|+.+++.+|.|.++.+....+++++++|++|+++|.+|||.+++++
T Consensus 131 L~~~s~~v~~~~~l~~va~~s~~~~~~l~~lv~eAv~~vg~~g~i~v~~~~~~g~~~~~v~G~~~~~g~~~p~~~~~~~~ 210 (544)
T PRK12850 131 LKKIAKKVTSSKEIAQVATISANGDESIGEMIAEAMDKVGKEGVITVEEAKTLGTELDVVEGMQFDRGYLSPYFVTNPEK 210 (544)
T ss_pred HHHhccCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccCceeeEEccccCcceEEEEeEEecCccCcCcccccccc
Confidence 99999999888899999999998899999999999999998888888876666789999999999999999999998888
Q ss_pred ceeeecCceEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCcchhhHhhHHhhccCCCCcEEEEeecCcchhhhhhHH
Q 012481 164 KECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIME 243 (462)
Q Consensus 164 ~~~~l~~~~Il~~d~~i~~~~~i~~~le~i~~~g~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le 243 (462)
++.+++||+|+++|.++++.+++.++++++.++|+||||++++|+++++++|..|+++|.+++++||+|+||+.|+++|+
T Consensus 211 ~~~~~~n~~Ill~d~~i~~~~~i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~g~~~~~~le 290 (544)
T PRK12850 211 MRAELEDPYILLHEKKISNLQDLLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRRKAMLE 290 (544)
T ss_pred CeEEEeCCEEEEEecccCCHHHHHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCCcCcccHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCEEecCCCCCCccCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhccc----HHHHHHHh
Q 012481 244 DLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLA 319 (462)
Q Consensus 244 dla~~tG~~i~~~~~~~~~~~~~~~~LG~a~~v~i~~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s----~~l~~Rl~ 319 (462)
|||++|||++++++.+.+++++++++||+|++|+++++++++++++++++.++.|+.+++++++++.+ ++|+|||+
T Consensus 291 ~ia~~tG~~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~eR~~ 370 (544)
T PRK12850 291 DIAVLTGGQVISEDLGIKLENVTLDMLGRAKRVLITKENTTIIDGAGDKKNIEARVKQIRAQIEETTSDYDREKLQERLA 370 (544)
T ss_pred HHHHHhCCEEeccccCCCcccCCHHHcCCCcEEEEEeeeEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 99999999999987777799999999999999999999999999999999999999999999998766 99999999
Q ss_pred hhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcCCcCChhHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH
Q 012481 320 KLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNALKMA 399 (462)
Q Consensus 320 ~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~a~~~gvVpGGGa~el~~s~~L~~~~~~~~~~~~gi~~~a~AL~~~ 399 (462)
||+|+.+||+|||+|+++++|++|+++||+|++|+++++|||||||++|+++|..|+++...++++|+|+++|++||+.|
T Consensus 371 ~l~~~~~tI~irG~t~~~l~E~er~i~DAl~~~k~a~~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~i~~~a~Al~~i 450 (544)
T PRK12850 371 KLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEEGIVPGGGVALLRARSALRGLKGANADETAGIDIVRRALEEP 450 (544)
T ss_pred HhcCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhcCCccCCcHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998434899999999999999999
Q ss_pred HHHHHHhcCCChHHH-HHHHhcCCCCccccccC----CchhcCCccccccHHHHHHHHHHHHHHHhcC
Q 012481 400 AYLIASNAGVDGSVI-DKLLEQDSSDLGYNPAR----DMFKCGDVDPLKHVPSEFAKATSMISLKNAI 462 (462)
Q Consensus 400 ~~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~----dm~~~gI~dP~~v~~~al~~A~~~A~~lL~i 462 (462)
|++||+|||+|+.++ ++|++.+ .++|||+.+ ||++.|||||+.||+++|++|+++|++||+|
T Consensus 451 p~~La~NaG~d~~~v~~~l~~~~-~~~G~d~~~g~~~d~~~~gI~Dp~~vk~~al~~A~~~a~~iL~i 517 (544)
T PRK12850 451 LRQIATNAGFEGSVVVGKVAELP-GNFGFNAQTGEYGDMVEAGIIDPAKVTRTALQDAASIAALLITT 517 (544)
T ss_pred HHHHHHhcCCCHHHHHHHHHhhC-CCcceeCCCCcccchhhccCcccHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999 9997754 578999987 9999999999999999999999999999986
No 10
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=100.00 E-value=5.9e-95 Score=774.80 Aligned_cols=455 Identities=40% Similarity=0.572 Sum_probs=433.1
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012481 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (462)
Q Consensus 5 ~~~~lk~~~~~~p~~~~~~~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~i~~G~~~a~~~~~~~ 83 (462)
..+|||+|+++||++.+. +.+++++|++||+++||||||+|+||++||+++.++++ |+||+.|++||++|.+.++++
T Consensus 53 G~tIlk~i~~~hp~~~~~--akll~~~a~~qd~e~GDGTTtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~ 130 (541)
T PRK12851 53 GVTIAKEIELEDKFENMG--AQMVREVASKTNDVAGDGTTTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEE 130 (541)
T ss_pred HHHHHHHccCCCchhhHH--HHHHHHHHHhhhHhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999966644 66779999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCcceeEecCCCccceeEEEeeEEEeccccCCcccccccc
Q 012481 84 LDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNK 163 (462)
Q Consensus 84 L~~~~~~v~~~~~l~~vA~ts~~~~~~l~~li~~a~~~vg~~~~I~v~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~ 163 (462)
|+++++|+++.+++.++|++|+++++.+++++++|+.+++.+|.|.++.+.+..+++++++|++|++||.+|||.+++++
T Consensus 131 L~~~s~~~~~~~~l~~va~~s~~~~~~l~~lv~~Av~~vg~~g~i~i~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~ 210 (541)
T PRK12851 131 LKANARPVTTNAEIAQVATISANGDAEIGRLVAEAMEKVGNEGVITVEESKTAETELEVVEGMQFDRGYLSPYFVTDADK 210 (541)
T ss_pred HHHhccCCCCHHHHHHHHHHhccChHHHHHHHHHHHHHhcccCceEEEEccCCCcceEEEEEEEecCCccccccccCCCC
Confidence 99999999888889999999998899999999999999998888888876666788999999999999999999999889
Q ss_pred ceeeecCceEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCcchhhHhhHHhhccCCCCcEEEEeecCcchhhhhhHH
Q 012481 164 KECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIME 243 (462)
Q Consensus 164 ~~~~l~~~~Il~~d~~i~~~~~i~~~le~i~~~g~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le 243 (462)
++.+++||+|+++|.++++.+++.++++++.++|+||||++++|+++++++|..|+++|.++|++||+|+||+.|+++|+
T Consensus 211 ~~~~~~~~~Ilv~d~~i~~~~~i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~~~~~~l~ 290 (541)
T PRK12851 211 MEAELEDPYILIHEKKISNLQDLLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLE 290 (541)
T ss_pred CeEEecccEEEEEcCCcCcHHHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCccccccHhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCEEecCCCCCCccCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhccc----HHHHHHHh
Q 012481 244 DLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLA 319 (462)
Q Consensus 244 dla~~tG~~i~~~~~~~~~~~~~~~~LG~a~~v~i~~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s----~~l~~Rl~ 319 (462)
|||++|||++++++.+.+++++++++||+|++|++.+++++++++++++++++.|+++|+++++++.+ ++|++||+
T Consensus 291 ~ia~~tGa~~i~~~~~~~~~~~~~~~LG~~~~v~~~~~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l~~ri~ 370 (541)
T PRK12851 291 DIAILTGGTVISEDLGIKLENVTLEQLGRAKKVVVEKENTTIIDGAGSKTEIEGRVAQIRAQIEETTSDYDREKLQERLA 370 (541)
T ss_pred HHHHHhCCEEeccCCCCCcCcCCHHHcCCccEEEEEcceEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999999987777799999999999999999999999999999999999999999999998765 99999999
Q ss_pred hhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcCCcCChhHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH
Q 012481 320 KLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTTNSDQKIGVQIVQNALKMA 399 (462)
Q Consensus 320 ~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~a~~~gvVpGGGa~el~~s~~L~~~~~~~~~~~~gi~~~a~AL~~~ 399 (462)
||+|+++||+|||+|+++++|++|+++||+|++|+++++|||||||++|+++|+.|++++..++++|+|+++|++||+.|
T Consensus 371 ~l~g~~~tI~irG~t~~~l~E~er~i~DAl~a~~~al~~g~VpGGGa~e~~~s~~L~~~~~~~~~~~~~~~~~a~AL~~i 450 (541)
T PRK12851 371 KLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVEEGIVPGGGVALLRAVKALDKLETANGDQRTGVEIVRRALEAP 450 (541)
T ss_pred HhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcCcccCchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998766889999999999999999
Q ss_pred HHHHHHhcCCChHHH-HHHHhcCCCCccccccC----CchhcCCccccccHHHHHHHHHHHHHHHhcC
Q 012481 400 AYLIASNAGVDGSVI-DKLLEQDSSDLGYNPAR----DMFKCGDVDPLKHVPSEFAKATSMISLKNAI 462 (462)
Q Consensus 400 ~~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~----dm~~~gI~dP~~v~~~al~~A~~~A~~lL~i 462 (462)
|++||+|||+|+.++ ++|++.+ .++|||+.+ ||++.|||||+.||+++|+.|+++|++||+|
T Consensus 451 p~~La~NaG~d~~~vl~~l~~~~-~~~G~d~~~g~~~d~~~~GIiDp~~vk~~al~~A~e~A~~iL~i 517 (541)
T PRK12851 451 VRQIAENAGAEGSVVVGKLREKP-GGYGFNAATNEYGDLYAQGVIDPVKVVRTALQNAASVAGLLLTT 517 (541)
T ss_pred HHHHHHhcCCCHHHHHHHHHhhC-CCeeeeCCCCCccchhhccCEecHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999 9998754 479999987 9999999999999999999999999999986
No 11
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=100.00 E-value=4.4e-95 Score=780.57 Aligned_cols=455 Identities=32% Similarity=0.490 Sum_probs=431.7
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012481 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (462)
Q Consensus 5 ~~~~lk~~~~~~p~~~~~~~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~i~~G~~~a~~~~~~~ 83 (462)
..+|||+|++.||++.+. ..+++++|++||+++||||||++|||++||+++.++++ |+||+.|++||++|.+.+++.
T Consensus 108 G~TIlk~i~~~hP~~~~g--akll~~~a~~qd~evGDGTTTvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~ 185 (600)
T PLN03167 108 GVTVAKEVELEDPVENIG--AKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKE 185 (600)
T ss_pred HHHHHHHcccCCchhhHH--HHHHHHHHHhhhhhhCCCccHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999986654 66779999999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCcceeEecCCCccceeEEEeeEEEeccccCCcccccccc
Q 012481 84 LDCQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNK 163 (462)
Q Consensus 84 L~~~~~~v~~~~~l~~vA~ts~~~~~~l~~li~~a~~~vg~~~~I~v~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~ 163 (462)
|++++.|+++ ++|.++|++|+++++.|++++++|+.++|++|.|.+++|++..|++++++|++|++||.+|||++++++
T Consensus 186 L~~~s~~v~d-~~L~~vA~tS~~~~~~i~~liaeAv~~Vg~~g~i~v~~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~ 264 (600)
T PLN03167 186 LKKMSKEVED-SELADVAAVSAGNNYEVGNMIAEAMSKVGRKGVVTLEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEK 264 (600)
T ss_pred HHHhcccCCH-HHHHHHHHHhccCcHHHHHHHHHHHHHhccCCcEEeccCCCccceeEEEEEEEecCCccCcccccCcCC
Confidence 9999999975 679999999999899999999999999998899999999998888899999999999999999999999
Q ss_pred ceeeecCceEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCcchhhHhhHHhhccCCCCcEEEEeecCcchhhhhhHH
Q 012481 164 KECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIME 243 (462)
Q Consensus 164 ~~~~l~~~~Il~~d~~i~~~~~i~~~le~i~~~g~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~le 243 (462)
++.+++||+|+++|.+|++++++.++++.+.++|+||||++++|+++++++|+.|+++|.+++++||+|+||++|+++|+
T Consensus 265 m~~~l~np~Ill~d~~i~~~~~l~~~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~g~~~~~~L~ 344 (600)
T PLN03167 265 MSVEYDNCKLLLVDKKITNARDLIGILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLD 344 (600)
T ss_pred CeEEEeCCEEEEEccccCCHHHHHHHHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEcccCCcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCEEecCCCCCCccCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhccc----HHHHHHHh
Q 012481 244 DLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLA 319 (462)
Q Consensus 244 dla~~tG~~i~~~~~~~~~~~~~~~~LG~a~~v~i~~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s----~~l~~Rl~ 319 (462)
|||++|||++++++.+++++++++++||+|++|++++++++++++.++++.++.|+.+|+.+++++.+ ++|++||+
T Consensus 345 dia~~tGa~~i~~~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig~~~~~~~i~~r~~~i~~~~~~~~~~~~~~~l~~Ri~ 424 (600)
T PLN03167 345 DIAILTGGTVIREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDGSTQEAVNKRVAQIKNLIEAAEQDYEKEKLNERIA 424 (600)
T ss_pred HHHHhhCCEEecccccCCcccCCHHHCceeeEEEEecccceeeCCCccHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHh
Confidence 99999999999987777899999999999999999999999999989999999999999999987665 89999999
Q ss_pred hhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcCCcCChhHHHHHHHHHHHHhcCC-ChhHH-HHHHHHHHHHH
Q 012481 320 KLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTT-NSDQK-IGVQIVQNALK 397 (462)
Q Consensus 320 ~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~a~~~gvVpGGGa~el~~s~~L~~~~~~-~~~~~-~gi~~~a~AL~ 397 (462)
+|+|+.++|+|||+|+++++|++|+++||+|++|+|+++|+|||||++|+++|+.|++++.. ++++| +|+++|++||+
T Consensus 425 ~l~g~~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~gvVpGGGa~el~ls~~L~~~~~~~~~~eq~~g~~~~~~Al~ 504 (600)
T PLN03167 425 KLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLASKVDAIKDTLENDEQKVGADIVKRALS 504 (600)
T ss_pred hcCCcEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999998764 45554 67999999999
Q ss_pred HHHHHHHHhcCCChHHH-HHHHhcCCCCccccccC----CchhcCCccccccHHHHHHHHHHHHHHHhcC
Q 012481 398 MAAYLIASNAGVDGSVI-DKLLEQDSSDLGYNPAR----DMFKCGDVDPLKHVPSEFAKATSMISLKNAI 462 (462)
Q Consensus 398 ~~~~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~----dm~~~gI~dP~~v~~~al~~A~~~A~~lL~i 462 (462)
.||++||+|||+|+.++ ++|++++++++|||+.+ ||++.|||||+.||+++|++|+++|++||+|
T Consensus 505 ~p~r~La~NAG~d~~~vv~~L~~~~~~~~G~d~~~g~~~dm~~~GI~Dp~~Vk~~al~~A~~~A~~iL~i 574 (600)
T PLN03167 505 YPLKLIAKNAGVNGSVVSEKVLSNDNPKFGYNAATGKYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTS 574 (600)
T ss_pred cchhhhhhcCCCCHHHHHHHHHhcCCCCEeEeCCCCcCcchHhccCeecHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 99986567789999987 9999999999999999999999999999986
No 12
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-86 Score=670.74 Aligned_cols=450 Identities=39% Similarity=0.574 Sum_probs=436.4
Q ss_pred HHhhhccccCccccccchhhhhhhhhhhhcccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHHHh
Q 012481 7 SLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLD 85 (462)
Q Consensus 7 ~~lk~~~~~~p~~~~~~~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~i~~G~~~a~~~~~~~L~ 85 (462)
|+.++|++.++...+. +.++++++....++.||||||+++|++++..++.+-+. |.+|..+++|+.+|.+.+++.|+
T Consensus 68 Tva~si~l~d~~~n~g--aklvq~va~~tN~~agdGtttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~ 145 (550)
T KOG0356|consen 68 TVAKSIELKDKYENIG--AKLVQDVANNTNEEAGDGTTTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELK 145 (550)
T ss_pred eeeccccccchhhhhc--cHHHHHHHhhccCccccCcchHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHH
Confidence 5678999999999988 99999999999999999999999999999999999999 99999999999999999999999
Q ss_pred ccccccCCHHHHHHHHHHhcCCChhHHHHHHHHHHhhccCcceeEecCCCccceeEEEeeEEEeccccCCccccccccce
Q 012481 86 CQARKITTFEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKE 165 (462)
Q Consensus 86 ~~~~~v~~~~~l~~vA~ts~~~~~~l~~li~~a~~~vg~~~~I~v~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~ 165 (462)
++++|+++.+++.+||++|+|+|..+++++++|+.++|++|.|+++.|++..|++++++||.||+||+||||.++++..+
T Consensus 146 k~sk~Vtt~eeIaqVAtiSAngD~~ig~li~~a~~kvG~~GVItv~~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~ 225 (550)
T KOG0356|consen 146 KMSKPVTTPEEIAQVATISANGDKEIGNLISDAMKKVGRKGVITVKDGKTLEDELEVIEGMKFDRGYISPYFITSSKKQK 225 (550)
T ss_pred HhCCCCCCHHHHHHHHhhhcCCcHHHHHHHHHHHHHhCcCCeEEeecCCccccchhhhhcccccccccCccccccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCceEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCcchhhHhhHHhhccCCCCcEEEEeecCcchhhhhhHHHH
Q 012481 166 CVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDL 245 (462)
Q Consensus 166 ~~l~~~~Il~~d~~i~~~~~i~~~le~i~~~g~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledl 245 (462)
++|++|++++++.+|+++++|.|.||...+..+||+||++||+.++|.+|+.|++++.++++|||.|+|||.|++.+.|+
T Consensus 226 ~e~e~~~~ll~~kki~~v~~ivp~LE~A~~~~~PLliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgfGdnrk~~l~Di 305 (550)
T KOG0356|consen 226 VEFENALLLLSEKKISSVQSIVPALELALAKRRPLLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKNLLKDI 305 (550)
T ss_pred hhhhhhhhhhhhhhhhHHHHHhHHHHHhhhccCceEEEehhcchhHHHHHHhhhhccceeEEEEecCCCcchHHHhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCEEecCCCC-CCccCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhccc----HHHHHHHhh
Q 012481 246 AILTGGQVLTGGSG-MNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTS----DKLKDRLAK 320 (462)
Q Consensus 246 a~~tG~~i~~~~~~-~~~~~~~~~~LG~a~~v~i~~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s----~~l~~Rl~~ 320 (462)
|.+||++++.++.+ +++++.++++||.++++.++.+.+.++.+.+++++++.||++++..++.+++ ++++||+++
T Consensus 306 ai~Tg~~v~~~e~~~l~le~~~~~dLG~~~evvvtkd~t~ll~g~~~~~~v~~rIeqik~~~e~t~~~ye~ekl~er~a~ 385 (550)
T KOG0356|consen 306 AILTGATVFGEELSTLNLEDAKLEDLGEVGEVVVTKDDTMLLKGKGNKAQVEGRIEQIKEMIEETTSDYEKEKLNERLAK 385 (550)
T ss_pred HHHhhhhhhccchhhcccccCchhhcCcceeEEEecCcceeeCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHH
Confidence 99999999999977 7999999999999999999999999999999999999999999998888776 899999999
Q ss_pred hcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcCCcCChhHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHH
Q 012481 321 LSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMA 399 (462)
Q Consensus 321 l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~a~~~gvVpGGGa~el~~s~~L~~~~~~-~~~~~~gi~~~a~AL~~~ 399 (462)
|+||+++|.|||.|+.|++|++++++|||||+++|+++|+|||||+++++|+..|.++... +.+++.|++++.+||..|
T Consensus 386 ls~gvavi~vGg~se~Ev~ekk~rv~dalnat~aaveeGivpGGG~all~~~~~l~~lk~~~~~~~k~G~eiv~~Al~~P 465 (550)
T KOG0356|consen 386 LSGGVAVIKVGGHSEVEVNEKKDRVEDALNATRAAVEEGIVPGGGTALLRAIPVLDELKATNNFDQKVGVEIVKKALRLP 465 (550)
T ss_pred hcCCeEEEEecCcchhhhhhhhhhHHHHHHHHHHHhhcCcccCCchHHHHhhhhhhhcccccchHhhhhHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999999999988764 788999999999999999
Q ss_pred HHHHHHhcCCChHHH-HHHHhcCCCCccccccC----CchhcCCccccccHHHHHHHHHHHHHHHhc
Q 012481 400 AYLIASNAGVDGSVI-DKLLEQDSSDLGYNPAR----DMFKCGDVDPLKHVPSEFAKATSMISLKNA 461 (462)
Q Consensus 400 ~~~La~NaG~d~~~v-~~l~~~~~~~~G~d~~~----dm~~~gI~dP~~v~~~al~~A~~~A~~lL~ 461 (462)
.++||+|||.|+..+ .|++. ..+|||+.+ ||.+.||+||++|.+.+|..|.++|+++++
T Consensus 466 ~~~IakNAGvdg~~vv~Kv~~---~~~gyda~~~ey~dlv~~GiidP~kVvr~al~~a~~vasll~t 529 (550)
T KOG0356|consen 466 AQTIAKNAGVDGSVVVEKVLN---DDYGYDAAKGEYVDLVEAGIIDPTKVVRTALTDAAGVASLLTT 529 (550)
T ss_pred HHHHHHhcCCchHHHHHHHHh---hhhhhhhhcccHHHHHhccCCChHHHHHHhhhhhhHHHHHHhh
Confidence 999999999999999 99883 389999998 999999999999999999999999999875
No 13
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.3e-78 Score=643.17 Aligned_cols=391 Identities=18% Similarity=0.235 Sum_probs=353.0
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012481 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (462)
Q Consensus 5 ~~~~lk~~~~~~p~~~~~~~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~i~~G~~~a~~~~~~~ 83 (462)
..+|||+|++.||+++++ .++|++||+++||||||+++||++||+++.++++ |+||+.|++||++|.+.++++
T Consensus 54 G~tIlk~i~~~hP~a~l~------~~~a~~qd~~~GDGTTt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~ 127 (484)
T cd03342 54 GNVLLSEMQIQHPTASMI------ARAATAQDDITGDGTTSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKF 127 (484)
T ss_pred HHHHHHhccCcCHHHHHH------HHHHHHhhhHhCCChhhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999977 5899999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC---CHHHHHHHHHHhcCCC------hhHHHHHHHHHHhhccCc-c-----eeEe--cCCCccceeEEEeeE
Q 012481 84 LDCQARKIT---TFEEIAQVGTTAANGD------GEIGELIAKVFEKGWEND-L-----ITIF--DRKALYNELNFVKGM 146 (462)
Q Consensus 84 L~~~~~~v~---~~~~l~~vA~ts~~~~------~~l~~li~~a~~~vg~~~-~-----I~v~--~g~~~~d~~~~~~G~ 146 (462)
|++++.+++ +.+.+.+||++|++++ +.|++++++|+..+++++ . |++. +|++. +++++++|+
T Consensus 128 L~~~s~~v~~~~~~~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~I~i~ki~ggs~-~ds~~i~G~ 206 (484)
T cd03342 128 LESFKVPVEIDTDRELLLSVARTSLRTKLHADLADQLTEIVVDAVLAIYKPDEPIDLHMVEIMQMQHKSD-SDTKLIRGL 206 (484)
T ss_pred HHHhcccCCCCCCHHHHHHHHHHHhCcccchhHHHHHHHHHHHHHHHHhhcCCccChhHeEEEEecCCCh-hhceEEeeE
Confidence 999999987 7889999999999864 789999999999998765 2 3332 45554 679999999
Q ss_pred EEeccccCCccccccccceeeecCceEEEeccccCCHHH-HHHHHHHHHHcCCCEEEEecCcchhhHhhHHhhccCCCCc
Q 012481 147 KLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNV-IRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEK 225 (462)
Q Consensus 147 ~~~~g~~~~~~~~~~~~~~~~l~~~~Il~~d~~i~~~~~-i~~~le~i~~~g~~lvii~~~i~~~al~~l~~n~~~~~~~ 225 (462)
+|+++|.+|+|+ .+++||+|+++|.+++.++. +.. ..-.+|||++++|++.++++|..|+
T Consensus 207 ~~~~~~~~~~m~-------~~~~n~~Ill~~~~le~~~~~~~~------~~~~~lvi~~~~I~~~al~~l~~~~------ 267 (484)
T cd03342 207 VLDHGARHPDMP-------KRVENAYILTCNVSLEYEKTEVNS------GFFYSVVINQKGIDPPSLDMLAKEG------ 267 (484)
T ss_pred EEecCCCCCCCC-------ccccCceEEEEeCCCCCCccccCc------EEEEEEEEeCCCccHHHHHHHHHCC------
Confidence 999999999984 36899999999999886643 211 1124699999999999999999874
Q ss_pred EEEEeecCcchhhhhhHHHHHHHhCCEEecCCCCCCccCCCCCCceeeeEE---EEecceEEEEcCCCChhhHHHHHHHH
Q 012481 226 VCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRV---IATMDNVVIIGGSGELVDIQERCEQL 302 (462)
Q Consensus 226 i~avk~~~~g~~r~~~ledla~~tG~~i~~~~~~~~~~~~~~~~LG~a~~v---~i~~~~~~~~~g~~~~~~i~~r~~~l 302 (462)
|++||+. ++++|+|||++|||+++++ ++++++++||+|++| ++++++++++++++++
T Consensus 268 I~av~~~-----~~~~l~~ia~~tGa~ii~~-----l~~~~~~~LG~~~~v~~~~ig~~~~~~i~~~~~~---------- 327 (484)
T cd03342 268 ILALRRA-----KRRNMERLTLACGGVAMNS-----VDDLSPECLGYAGLVYERTLGEEKYTFIEGVKNP---------- 327 (484)
T ss_pred CeEEEeC-----CHHHHHHHHHHhCCEEecc-----cccCChhhCcccceEEEEEECCeEEEEEECCCCC----------
Confidence 8999987 5667999999999999996 899999999999999 5778899999998875
Q ss_pred HHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcC-CcCChhHHHHHHHHHHHHhcCC
Q 012481 303 RSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQTT 381 (462)
Q Consensus 303 ~~~l~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~a~~~g-vVpGGGa~el~~s~~L~~~~~~ 381 (462)
+.+||+|||+|+.+++|+||+++||++++|+++++| +|||||++|+++|++|++++..
T Consensus 328 ---------------------~~~tI~lrg~t~~~l~E~er~l~DAl~~vk~~~~~~~~vpGGGa~e~~ls~~L~~~~~~ 386 (484)
T cd03342 328 ---------------------KSCTILIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCVVPGAGAFEVALYAHLKEFKKS 386 (484)
T ss_pred ---------------------cEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCcEEeCCCHHHHHHHHHHHHHhhc
Confidence 469999999999999999999999999999999999 9999999999999999999775
Q ss_pred -ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCccccccC----CchhcCCccccccHHHHHHHH
Q 012481 382 -NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPAR----DMFKCGDVDPLKHVPSEFAKA 452 (462)
Q Consensus 382 -~~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~~---~~~~~G~d~~~----dm~~~gI~dP~~v~~~al~~A 452 (462)
++++|+++++|++||+.||++||+|||+|+.++ .+|++. +++++|||+.+ ||++.|||||+.||+++|+.|
T Consensus 387 ~~~~~~~~i~~~a~Al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~~~d~~~~gI~dp~~vk~~~l~~A 466 (484)
T cd03342 387 VKGKAKLGVQAFADALLVIPKTLAENSGLDVQETLVKLQDEYAEGGQVGGVDLDTGEPMDPESEGIWDNYSVKRQILHSA 466 (484)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeeCCCCcccchhhcCcEEcHHHHHHHHHHH
Confidence 899999999999999999999999999999999 999753 45678999987 999999999999999999999
Q ss_pred HHHHHHHhcC
Q 012481 453 TSMISLKNAI 462 (462)
Q Consensus 453 ~~~A~~lL~i 462 (462)
+++|++||||
T Consensus 467 ~e~a~~iL~I 476 (484)
T cd03342 467 TVIASQLLLV 476 (484)
T ss_pred HHHHHHHhhh
Confidence 9999999997
No 14
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.3e-77 Score=641.01 Aligned_cols=398 Identities=18% Similarity=0.216 Sum_probs=353.0
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012481 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (462)
Q Consensus 5 ~~~~lk~~~~~~p~~~~~~~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~i~~G~~~a~~~~~~~ 83 (462)
..+|||+|+++||+++++ .++|++||+++||||||++|||++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 58 G~TIlk~i~i~hP~a~ll------~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~ 131 (531)
T TIGR02347 58 GNVLLNEMQIQHPTASMI------ARAATAQDDITGDGTTSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEF 131 (531)
T ss_pred HHHHHHhccccChHHHHH------HHHHHHhhhhhcCcHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999977 5899999999999999999999999999999999 999999999999999999999
Q ss_pred Hhcccccc---CCHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccCcc------eeE-ecCCCccceeEEEeeEE
Q 012481 84 LDCQARKI---TTFEEIAQVGTTAANG------DGEIGELIAKVFEKGWENDL------ITI-FDRKALYNELNFVKGMK 147 (462)
Q Consensus 84 L~~~~~~v---~~~~~l~~vA~ts~~~------~~~l~~li~~a~~~vg~~~~------I~v-~~g~~~~d~~~~~~G~~ 147 (462)
|++++.++ .+.+.|.++|++++++ ++.|++++++|+..+++++. |++ +..++..+++++++|++
T Consensus 132 L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~iv~~Av~~v~~~~~~i~~~~I~i~k~~g~s~~ds~~v~Giv 211 (531)
T TIGR02347 132 LDKFKIKTEDEVDRELLLNVARTSLRTKLPIDLADQLTEIVVDAVLAIKKDGEQIDLFMVEIMEMKHKSATDTTLIRGLV 211 (531)
T ss_pred HHHhhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhhcCCCCChhHeEEEEecCCCccccEEEeeEE
Confidence 99999664 4678899999999865 67899999999999987653 343 22333456899999999
Q ss_pred EeccccCCccccccccceeeecCceEEEeccccCCH-------------HH-----------HHHHHHHHHHcCC-----
Q 012481 148 LEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNS-------------NV-----------IRQASLPCMMQGQ----- 198 (462)
Q Consensus 148 ~~~g~~~~~~~~~~~~~~~~l~~~~Il~~d~~i~~~-------------~~-----------i~~~le~i~~~g~----- 198 (462)
|+++|.+|+|++ +++||+|+++|.+++.. ++ +...++++.+.|+
T Consensus 212 ~~~~~~~~~~~~-------~~~n~~Ill~~~~le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~ 284 (531)
T TIGR02347 212 LDHGARHPDMPR-------RVKNAYILTCNVSLEYEKTEVNSGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGK 284 (531)
T ss_pred EecCcCCCCCce-------eccCceEEEEeCCCCCCccccCceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 999999999853 78999999999886532 22 3445566766551
Q ss_pred --C---EEEEecCcchhhHhhHHhhccCCCCcEEEEeecCcchhhhhhHHHHHHHhCCEEecCCCCCCccCCCCCCceee
Q 012481 199 --S---LLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSC 273 (462)
Q Consensus 199 --~---lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tG~~i~~~~~~~~~~~~~~~~LG~a 273 (462)
+ ||+++++|++.++++|..+ +|++++++ ++++|+|||++|||+++++ ++++++++||+|
T Consensus 285 ~~~~~~lvi~~k~I~~~a~~~L~~~------~I~~i~rv-----~~~~le~ia~~tGa~~i~~-----l~~~~~~~LG~~ 348 (531)
T TIGR02347 285 SPDKGFVVINQKGIDPPSLDLLAKE------GIMALRRA-----KRRNMERLTLACGGEALNS-----VEDLTPECLGWA 348 (531)
T ss_pred CCCccEEEEeCCCccHHHHHHHHHC------CceEEccC-----CHHHHHHHHHHhCCEEecc-----cccCCccccccc
Confidence 3 8889999999999999974 48999987 3567999999999999986 899999999999
Q ss_pred eEE---EEecceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHH
Q 012481 274 KRV---IATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALH 350 (462)
Q Consensus 274 ~~v---~i~~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~ 350 (462)
++| ++++++++++++++++ +.|||+|||+|+++++|++|+++||+|
T Consensus 349 ~~v~~~~ig~~~~~~i~~~~~~-------------------------------~~~TI~lrG~t~~~l~E~er~l~DAl~ 397 (531)
T TIGR02347 349 GLVYETSIGEEKYTFIEEVKNP-------------------------------KSCTILIKGPNDHTIKQIKDAVRDGLR 397 (531)
T ss_pred eEEEEEEECCeEEEEEEcCCCC-------------------------------CeEEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 999 6788899999998876 468999999999999999999999999
Q ss_pred HHHHHHHcC-CcCChhHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCC
Q 012481 351 AVQAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSD 424 (462)
Q Consensus 351 a~k~a~~~g-vVpGGGa~el~~s~~L~~~~~~-~~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~~---~~~~ 424 (462)
++|+++++| +|||||++|+++|++|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++. ++.+
T Consensus 398 v~~~~~~~~~vvpGGGa~E~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~vl~~l~~~~~~~~~~ 477 (531)
T TIGR02347 398 AVKNAIEDKCVVPGAGAFEIAAYCHLKEEKKSVKGKAKLGVEAFANALLVIPKTLAENSGLDAQDTLVKLEDEHDEGGEV 477 (531)
T ss_pred HHHHHhhCCcEEeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCc
Confidence 999999998 9999999999999999999765 899999999999999999999999999999999 999753 3357
Q ss_pred ccccccC----CchhcCCccccccHHHHHHHHHHHHHHHhcC
Q 012481 425 LGYNPAR----DMFKCGDVDPLKHVPSEFAKATSMISLKNAI 462 (462)
Q Consensus 425 ~G~d~~~----dm~~~gI~dP~~v~~~al~~A~~~A~~lL~i 462 (462)
+|||+.+ ||++.|||||+.||+++|+.|+++|++||||
T Consensus 478 ~Gid~~~g~~~d~~~~gV~Dp~~vk~~al~~A~e~a~~iLrI 519 (531)
T TIGR02347 478 VGVDLETGEPIDPEIKGIWDNYRVKKQLIQSATVIASQLLLV 519 (531)
T ss_pred eeeeccCCCccchhhccCEEcHHHHHHHHHHHHHHHHHHHhH
Confidence 8999976 9999999999999999999999999999997
No 15
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.5e-79 Score=645.33 Aligned_cols=428 Identities=31% Similarity=0.428 Sum_probs=373.5
Q ss_pred HHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHHH
Q 012481 6 CSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNL 84 (462)
Q Consensus 6 ~~~lk~~~~~~p~~~~~~~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~i~~G~~~a~~~~~~~L 84 (462)
.+|||+|+++||.+|++ +++|++||+++||||||+||||++||++|.++++ |+||+.|++||++|.+.++++|
T Consensus 54 ~tIlkeielehp~akll------~eva~~qd~e~GDGTTtavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l 127 (524)
T COG0459 54 VTILKEIELEHPGAKLL------VEVAKKQDDEAGDGTTTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEEL 127 (524)
T ss_pred ceehhhhhccCchhHHH------HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999966 7899999999999999999999999999999999 9999999999999999999999
Q ss_pred hccccccCCHH-----HHHHHHHHhcCCChhHHHHHHHHHHhhcc-----CcceeEecCCCccceeEEEeeEEEeccccC
Q 012481 85 DCQARKITTFE-----EIAQVGTTAANGDGEIGELIAKVFEKGWE-----NDLITIFDRKALYNELNFVKGMKLEWGLKS 154 (462)
Q Consensus 85 ~~~~~~v~~~~-----~l~~vA~ts~~~~~~l~~li~~a~~~vg~-----~~~I~v~~g~~~~d~~~~~~G~~~~~g~~~ 154 (462)
++.++++++.+ ...++++.+.++++.+++++++|+.+++. ++.+.++..++..+++++++||+||+||.+
T Consensus 128 ~~~a~~v~~~~~~~~~~~t~v~sk~~~~~~~i~~lv~~Av~~v~~~~~d~~~i~~vk~~gg~~~e~~vveG~~~dkg~~s 207 (524)
T COG0459 128 KEIAKPVSDSEEELKIAITSVASKSANSDEEIGELVVEAVEKVGKEQSDLDGIIIVKESGGSETELEVVEGMVFDKGYLS 207 (524)
T ss_pred HHhhccCCcchhhhhhhhheeeeeeccChHHHHHHHHHHHHHhcccccccCCeEEEEecCCCccceEEEeeEEecCCccC
Confidence 99999998544 44444455555578999999999999998 787888887777889999999999999999
Q ss_pred CccccccccceeeecCceEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCcchhhHhhHHhhccCCCCcEEEEeecCc
Q 012481 155 PYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGL 234 (462)
Q Consensus 155 ~~~~~~~~~~~~~l~~~~Il~~d~~i~~~~~i~~~le~i~~~g~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~ 234 (462)
|||.++ .+++||+|+++|.+|+..+..+| ++...+++.||+++++++.++++..++.|.+++..++++|+.|+|
T Consensus 208 ~~~~~~-----~~~e~~~Ili~d~~l~~~k~~l~-~e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi 281 (524)
T COG0459 208 PYFMPD-----KRLENPKILLLDKKLEIKKPELP-LEIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGI 281 (524)
T ss_pred CCCCCc-----cccccceEEEEccccccccccCc-ceeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 998754 47889999999999999888888 787778888999999999988999999999888889899999999
Q ss_pred chhhhhhHHHHHHHhCCEEecCCCCCCccCCCCCCceeeeEEEEecceEEEEcCCCChhhHHHHHHHHHHHhhhc-cc--
Q 012481 235 AEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATMDNVVIIGGSGELVDIQERCEQLRSTIKLS-TS-- 311 (462)
Q Consensus 235 g~~r~~~ledla~~tG~~i~~~~~~~~~~~~~~~~LG~a~~v~i~~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~-~s-- 311 (462)
||.++..|+|++++||+++.+++.+ .....+|.|..|...++.+....|.+. ..++++. .+
T Consensus 282 ~D~~~~~L~d~~Ilt~~~v~~~dl~-----~~l~~~~ga~~v~~~~d~t~~~~G~~~-----------~~~ve~~~~~~~ 345 (524)
T COG0459 282 DDLAKAYLEDIAILTGRRVKKEDLG-----ERLAKLGGAKIVSVLKDLTTIVLGEGA-----------AGLVEETKTGDY 345 (524)
T ss_pred cHHHHHHHHhhcceecceecchhhH-----HHHHHccCceEEeecccCceeecCccc-----------cceEEEeeccch
Confidence 9999888888888888888876432 144567777777776666655555320 1122222 22
Q ss_pred --HHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcC-CcCChhHHHHHHHHHHHHhc-CCCh-hHH
Q 012481 312 --DKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQ-TTNS-DQK 386 (462)
Q Consensus 312 --~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~a~~~g-vVpGGGa~el~~s~~L~~~~-~~~~-~~~ 386 (462)
+.+++|.++ .|++|||+|||+|+++++|++|+++||||++|+++++| +|||||++|+++++.|++|+ ..++ ++|
T Consensus 346 ~~~~~~~~~~~-~~~~~tI~vrgate~~ldE~er~i~DAL~~~~~ave~g~iV~GGGa~e~~~a~~L~~~~~~~~g~~e~ 424 (524)
T COG0459 346 DMEKLQERKAK-AGGVATILVRGATEVELDEKERRIEDALNVVRAAVEEGKIVPGGGAAEIEAALRLREYAMTVEGGDEQ 424 (524)
T ss_pred hhhhhhhhhhc-CCCeEEEEECCccHhHHHHHHHHHHHHHHHHHHHHhcCCeEeCCCHHHHHHHHHHHhhhccCCchHHH
Confidence 778888888 89999999999999999999999999999999999999 99999999999999999983 3354 999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhcCC-CCccccccC-----CchhcCCccccccHHHHHHHHHHHHHHH
Q 012481 387 IGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQDS-SDLGYNPAR-----DMFKCGDVDPLKHVPSEFAKATSMISLK 459 (462)
Q Consensus 387 ~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~~~~-~~~G~d~~~-----dm~~~gI~dP~~v~~~al~~A~~~A~~l 459 (462)
+|+++|++||+.||++||+|||+||.++ .+|++.++ +++|||+.+ ||++.|||||+.||+++|++|+++|+++
T Consensus 425 ~~i~~~a~Ale~ip~~La~NaG~d~~~v~~~L~~~~~~~~~G~d~~~~~~~~dm~~~GI~dP~~v~~~al~~A~e~a~ll 504 (524)
T COG0459 425 LGIEAFARALEAPPRQLAENAGLDPIEVLSKLRSAHATTNYGIDAFTGEYEDDMIEAGIIDPLKVKRSALKNAAEAAGLL 504 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhcccCCccceeccCCccccchHhccCcChHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 99998654 459999998 7999999999999999999999999999
Q ss_pred hcC
Q 012481 460 NAI 462 (462)
Q Consensus 460 L~i 462 (462)
|+|
T Consensus 505 L~~ 507 (524)
T COG0459 505 LTI 507 (524)
T ss_pred HHH
Confidence 985
No 16
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=6.1e-77 Score=636.38 Aligned_cols=397 Identities=19% Similarity=0.272 Sum_probs=360.3
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012481 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (462)
Q Consensus 5 ~~~~lk~~~~~~p~~~~~~~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~i~~G~~~a~~~~~~~ 83 (462)
..+|||+|++.||+++++ +++|++||+++||||||+|+|+++|++++.++++ |+||+.|++||+.|.+.++++
T Consensus 57 G~tIlk~l~~~hP~a~ll------~~~a~~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~ 130 (517)
T cd03343 57 GATILKEMDIEHPAAKML------VEVAKTQDEEVGDGTTTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALEL 130 (517)
T ss_pred HHHHHHHccCcCHHHHHH------HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 579999999999998866 8899999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC--CHHHHHHHHHHhcCCC------hhHHHHHHHHHHhhccCcc---------eeE--ecCCCccceeEEEe
Q 012481 84 LDCQARKIT--TFEEIAQVGTTAANGD------GEIGELIAKVFEKGWENDL---------ITI--FDRKALYNELNFVK 144 (462)
Q Consensus 84 L~~~~~~v~--~~~~l~~vA~ts~~~~------~~l~~li~~a~~~vg~~~~---------I~v--~~g~~~~d~~~~~~ 144 (462)
|++++.+++ +.+.+.+||++|++++ +.+++++++|+.+++.++. |++ .+|++.. ++++++
T Consensus 131 L~~~s~~v~~~~~~~l~~va~ts~~sk~~~~~~~~l~~l~~~A~~~v~~~~~~~~~~~~~~I~i~k~~Ggs~~-ds~lv~ 209 (517)
T cd03343 131 LDEIAIKVDPDDKDTLRKIAKTSLTGKGAEAAKDKLADLVVDAVLQVAEKRDGKYVVDLDNIKIEKKTGGSVD-DTELIR 209 (517)
T ss_pred HHHhhcccCCCCHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHhhhccCCCccccHHHeeEEeecCcCHH-Hcceee
Confidence 999999986 6788999999999864 7899999999999976543 777 4677765 799999
Q ss_pred eEEEeccccCCccccccccceeeecCceEEEeccc-------------cCCHHHHHHHHH-----------HHHHcCCCE
Q 012481 145 GMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTK-------------ISNSNVIRQASL-----------PCMMQGQSL 200 (462)
Q Consensus 145 G~~~~~g~~~~~~~~~~~~~~~~l~~~~Il~~d~~-------------i~~~~~i~~~le-----------~i~~~g~~l 200 (462)
|++|+++|.+|+|+ ..++||+|++++.+ +++++++.++++ .+.+.|.||
T Consensus 210 G~v~~~~~~~~~m~-------~~~~n~~Illl~~~Le~~k~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~l 282 (517)
T cd03343 210 GIVIDKEVVHPGMP-------KRVENAKIALLDAPLEVKKTEIDAKIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANV 282 (517)
T ss_pred eEEEeccCCCCCCc-------cccCCCcEEEEeccccCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 99999999999984 36899999999988 467777666544 788999999
Q ss_pred EEEecCcchhhHhhHHhhccCCCCcEEEEeecCcchhhhhhHHHHHHHhCCEEecCCCCCCccCCCCCCceeeeEEEEe-
Q 012481 201 LVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIAT- 279 (462)
Q Consensus 201 vii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tG~~i~~~~~~~~~~~~~~~~LG~a~~v~i~- 279 (462)
||++++|+++++++|..+ ++++|+++ ++++|+|||++|||+++++ ++++++++||+|++|++.
T Consensus 283 vi~~~~I~~~al~~l~~~------gI~~v~~v-----~~~~l~~Ia~~tGa~ii~~-----~~~l~~~~LG~~~~v~~~~ 346 (517)
T cd03343 283 VFCQKGIDDLAQHYLAKA------GILAVRRV-----KKSDMEKLARATGAKIVTN-----IDDLTPEDLGEAELVEERK 346 (517)
T ss_pred EEeCCCccHHHHHHHhHC------CcEEEEeC-----CHHHHHHHHHHhCCEEecc-----hhhCChhhCCccceEEEEE
Confidence 999999999999999753 47899988 5777999999999999986 899999999999999865
Q ss_pred --cceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHH
Q 012481 280 --MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKE 357 (462)
Q Consensus 280 --~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~a~~ 357 (462)
++++++++++++++ .+||+|||+|+.+++|++|+++||++++|++++
T Consensus 347 ig~~~~~~~~~~~~~~-------------------------------~~TI~lrG~t~~~l~e~~~~l~Dal~~~~~~~~ 395 (517)
T cd03343 347 VGDDKMVFVEGCKNPK-------------------------------AVTILLRGGTEHVVDELERALEDALRVVADALE 395 (517)
T ss_pred ECCeEEEEEEcCCCCc-------------------------------eEEEEEECCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77899999988763 479999999999999999999999999999999
Q ss_pred cC-CcCChhHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCccccccC
Q 012481 358 EG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPAR 431 (462)
Q Consensus 358 ~g-vVpGGGa~el~~s~~L~~~~~~-~~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~---~~~~~~G~d~~~ 431 (462)
+| +|||||++|+++|..|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++ .++.++|||+.+
T Consensus 396 ~~~vvpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~~~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~ 475 (517)
T cd03343 396 DGKVVAGGGAVEIELAKRLREYARSVGGREQLAVEAFADALEEIPRTLAENAGLDPIDTLVELRAAHEKGNKNAGLDVYT 475 (517)
T ss_pred CCCeeeCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCceeeecCC
Confidence 99 9999999999999999998765 889999999999999999999999999999999 99974 245679999987
Q ss_pred ----CchhcCCccccccHHHHHHHHHHHHHHHhcC
Q 012481 432 ----DMFKCGDVDPLKHVPSEFAKATSMISLKNAI 462 (462)
Q Consensus 432 ----dm~~~gI~dP~~v~~~al~~A~~~A~~lL~i 462 (462)
||++.|||||+.||+++|+.|+++|++||+|
T Consensus 476 g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~i 510 (517)
T cd03343 476 GEVVDMLEKGVIEPLRVKKQAIKSATEAATMILRI 510 (517)
T ss_pred CCccchhhcCceecHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999986
No 17
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=1.4e-76 Score=633.37 Aligned_cols=397 Identities=19% Similarity=0.260 Sum_probs=358.9
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012481 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (462)
Q Consensus 5 ~~~~lk~~~~~~p~~~~~~~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~i~~G~~~a~~~~~~~ 83 (462)
..+|||+|++.||+++++ +++|++||+++||||||+++|+++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 58 G~tIlk~l~~~hP~a~ll------~~~a~~qd~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 131 (519)
T TIGR02339 58 GATILKEMDIEHPAAKML------VEVAKTQDAEVGDGTTTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEI 131 (519)
T ss_pred HHHHHHhccCCCHHHHHH------HHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999998866 8899999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC--CHHHHHHHHHHhcCCC-------hhHHHHHHHHHHhhcc---Ccc-------eeE--ecCCCccceeEE
Q 012481 84 LDCQARKIT--TFEEIAQVGTTAANGD-------GEIGELIAKVFEKGWE---NDL-------ITI--FDRKALYNELNF 142 (462)
Q Consensus 84 L~~~~~~v~--~~~~l~~vA~ts~~~~-------~~l~~li~~a~~~vg~---~~~-------I~v--~~g~~~~d~~~~ 142 (462)
|+++++|++ +.+.|.++|+|+++++ +.|++++++|+.+++. +|. |++ ..|++.. ++++
T Consensus 132 L~~~s~~v~~~~~~~L~~ia~tsl~sk~~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~Ggs~~-ds~l 210 (519)
T TIGR02339 132 IDEIATKISPEDRDLLKKVAETSLTGKASAEVTKDKLANLVVEAVKQVAEKRGDGKYYVDLDNIKIEKKTGGSID-DTEL 210 (519)
T ss_pred HHHhccccCcccHHHHHHHHHhhhccccccchhHHHHHHHHHHHHHHHhhhccCCCcccCHHHeEEEEccCcChh-ccee
Confidence 999999986 3678999999999764 6799999999999974 453 445 4677664 7999
Q ss_pred EeeEEEeccccCCccccccccceeeecCceEEEeccc-------------cCCHHHHHHHHH-----------HHHHcCC
Q 012481 143 VKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTK-------------ISNSNVIRQASL-----------PCMMQGQ 198 (462)
Q Consensus 143 ~~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Il~~d~~-------------i~~~~~i~~~le-----------~i~~~g~ 198 (462)
++|++|+++|.+|.|+ ..++||+|++++.+ +++++++.++++ .+++.|.
T Consensus 211 v~G~vi~~~~~~~~m~-------~~i~n~kIlll~~~Le~~~~~~~~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~ 283 (519)
T TIGR02339 211 VEGIVVDKEPVHPGMP-------KRVKNAKIALLDAPLEVEKTEIDAKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGA 283 (519)
T ss_pred EeeEEEecCCCCCCCc-------cccCCCcEEEEeccccccccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999998653 37899999999987 677788877776 7889999
Q ss_pred CEEEEecCcchhhHhhHHhhccCCCCcEEEEeecCcchhhhhhHHHHHHHhCCEEecCCCCCCccCCCCCCceeeeEEEE
Q 012481 199 SLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA 278 (462)
Q Consensus 199 ~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tG~~i~~~~~~~~~~~~~~~~LG~a~~v~i 278 (462)
|||+++++|++.++++|..+ ++++|+++ ++++|+|||++|||+++++ ++++++++||+|++|++
T Consensus 284 ~lvi~~~~I~~~al~~L~~~------gI~~v~~v-----~~~~L~rIa~~tGa~ii~~-----~~~l~~~~LG~~~~v~~ 347 (519)
T TIGR02339 284 NVVFCQKGIDDLAQHYLAKA------GILAVRRV-----KKSDIEKLARATGAKIVSS-----IKEITESDLGYAGLVEE 347 (519)
T ss_pred cEEEECCCccHHHHHHHHHC------CCEEEecC-----CHHHHHHHHHHhCCEEeCc-----hhhCChhhccCCceEEE
Confidence 99999999999999999753 47889987 5777999999999999986 88899999999999986
Q ss_pred ec---ceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHH
Q 012481 279 TM---DNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAA 355 (462)
Q Consensus 279 ~~---~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~a 355 (462)
.+ ++++++++++++. .+||+|||+|+.+++|.+|+++||++++|++
T Consensus 348 ~~ig~~~~~~~~~~~~~~-------------------------------~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~ 396 (519)
T TIGR02339 348 RKVGDDKMTFVEGCKNPK-------------------------------AVTILLRGGTEHVVDELERSIQDALHVVASA 396 (519)
T ss_pred EEECCeEEEEEEcCCCCC-------------------------------EEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
Confidence 54 7899999987653 5899999999999999999999999999999
Q ss_pred HHcC-CcCChhHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCccccc
Q 012481 356 KEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNP 429 (462)
Q Consensus 356 ~~~g-vVpGGGa~el~~s~~L~~~~~~-~~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~---~~~~~~G~d~ 429 (462)
+++| +|||||++|+++|+.|++++.. ++++++++++|++||+.||++||+|||+|+.++ .+|+. .++.++|||+
T Consensus 397 ~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~Gid~ 476 (519)
T TIGR02339 397 LEDGKVVAGGGAVEIELALRLRSYARKIGGREQLAIEAFADALEEIPRILAENAGLDPIDALVELRAKHEKGNKNAGINV 476 (519)
T ss_pred hcCCCEeeCCCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCceeEEc
Confidence 9998 9999999999999999998765 889999999999999999999999999999999 99974 2456799999
Q ss_pred cC----CchhcCCccccccHHHHHHHHHHHHHHHhcC
Q 012481 430 AR----DMFKCGDVDPLKHVPSEFAKATSMISLKNAI 462 (462)
Q Consensus 430 ~~----dm~~~gI~dP~~v~~~al~~A~~~A~~lL~i 462 (462)
.+ ||++.|||||+.||+++|+.|+++|++||+|
T Consensus 477 ~~g~~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~i 513 (519)
T TIGR02339 477 FTGEIEDMLELGVIEPLRVKEQAIKSATEAATMILRI 513 (519)
T ss_pred CCCCccchhhccceEcHHHHHHHHHHHHHHHHHHHhH
Confidence 87 9999999999999999999999999999986
No 18
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.3e-76 Score=634.49 Aligned_cols=402 Identities=17% Similarity=0.205 Sum_probs=355.4
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012481 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (462)
Q Consensus 5 ~~~~lk~~~~~~p~~~~~~~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~i~~G~~~a~~~~~~~ 83 (462)
..+|||+|++.||+++++ +++|++||+++||||||++|||++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 50 G~tIlk~i~~~hP~akll------~~~a~~q~~~~GDGTTt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 123 (527)
T cd03335 50 GATILKLLEVEHPAAKIL------VELAQLQDKEVGDGTTSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKY 123 (527)
T ss_pred HHHHHHhccccChHHHHH------HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999866 8899999999999999999999999999999999 999999999999999999999
Q ss_pred Hhc-cccccC--CHHHHHHHHHHhcC-----C-ChhHHHHHHHHHHhhc---cCcc-------eeE--ecCCCccceeEE
Q 012481 84 LDC-QARKIT--TFEEIAQVGTTAAN-----G-DGEIGELIAKVFEKGW---ENDL-------ITI--FDRKALYNELNF 142 (462)
Q Consensus 84 L~~-~~~~v~--~~~~l~~vA~ts~~-----~-~~~l~~li~~a~~~vg---~~~~-------I~v--~~g~~~~d~~~~ 142 (462)
|++ +++|++ +.+.|.++|+|+++ + .+.|++++++|+..++ .+|. |++ ..|++.. ++++
T Consensus 124 L~~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~~~~~~~~~~I~i~~~~Ggs~~-~s~l 202 (527)
T cd03335 124 IKEHLSISVDNLGKESLINVAKTSMSSKIIGADSDFFANMVVDAILAVKTTNEKGKTKYPIKAVNILKAHGKSAK-ESYL 202 (527)
T ss_pred HHHhhccCCCccCHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhhcccccCCCccCHHHeEEEEecCcChh-hcce
Confidence 996 899987 77889999999987 2 3789999999999985 2232 333 3566654 7999
Q ss_pred EeeEEEeccccCCccccccccceeeecCceEEEeccccCC-------------HHH-----------HHHHHHHHHHcCC
Q 012481 143 VKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISN-------------SNV-----------IRQASLPCMMQGQ 198 (462)
Q Consensus 143 ~~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Il~~d~~i~~-------------~~~-----------i~~~le~i~~~g~ 198 (462)
++|++|+++|.+|.|+ ..++||+|++++.+++. +.+ +.++++.+.+.|.
T Consensus 203 i~Givi~~~~~~~~m~-------~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~ 275 (527)
T cd03335 203 VNGYALNCTRASQGMP-------TRVKNAKIACLDFNLQKTKMKLGVQVVVTDPEKLEKIRQRESDITKERIKKILAAGA 275 (527)
T ss_pred eeeEEEecccCCCCCc-------ccccCCcEEEEeccCCCCccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999998653 37899999999988754 122 3466788889999
Q ss_pred CEEEEecCcchhhHhhHHhhccCCCCcEEEEeecCcchhhhhhHHHHHHHhCCEEecCCCCC-CccCCCCCCceeeeEEE
Q 012481 199 SLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGM-NSTYFVPLKLGSCKRVI 277 (462)
Q Consensus 199 ~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tG~~i~~~~~~~-~~~~~~~~~LG~a~~v~ 277 (462)
||||++++|++.++++|..+ +++++++. ++++|+|||++|||+++++..++ ..+++++++||+|++|+
T Consensus 276 ~lvi~~k~I~d~al~~L~~~------~I~~v~~v-----~~~~lerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~ 344 (527)
T cd03335 276 NVVLTTGGIDDMCLKYFVEA------GAMAVRRV-----KKEDLRRIAKATGATLVSTLANLEGEETFDPSYLGEAEEVV 344 (527)
T ss_pred CEEEeCCCCcHHHHHHHHHC------CcEEEEeC-----CHHHHHHHHHHhCCEEecChhhcCcccccCHhhCccCceEE
Confidence 99999999999999999985 48999988 56779999999999999874333 22456677999999998
Q ss_pred ---EecceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHH
Q 012481 278 ---ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQA 354 (462)
Q Consensus 278 ---i~~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~ 354 (462)
+++++++++++++++ +.|||+|||+|+++++|++|+++||+|++++
T Consensus 345 ~~~ig~~~~~~i~g~~~~-------------------------------~~~TIllrG~t~~~l~e~er~i~Dal~~~~~ 393 (527)
T cd03335 345 QERIGDDELILIKGTKKR-------------------------------SSASIILRGANDFMLDEMERSLHDALCVVKR 393 (527)
T ss_pred EEEECCeEEEEEEcCCCC-------------------------------CEEEEEEeCCcHHHHHHHHHHHHHHHHHHHH
Confidence 778899999998764 5799999999999999999999999999999
Q ss_pred HHHcC-CcCChhHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---C-------
Q 012481 355 AKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---D------- 421 (462)
Q Consensus 355 a~~~g-vVpGGGa~el~~s~~L~~~~~~-~~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~~---~------- 421 (462)
++++| +|||||++|++++..|++++.. ++++++++++|++||+.||++||+|||+|+.++ .+|++. +
T Consensus 394 ~~~~~~vvpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~~~~~l~~~h~~~~~~~~~~ 473 (527)
T cd03335 394 TLESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLVIPKTLAVNAAKDATELVAKLRAYHAAAQVKPDKK 473 (527)
T ss_pred HhhCCCEeeCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCccccc
Confidence 99999 9999999999999999999775 899999999999999999999999999999999 999762 2
Q ss_pred -CCCccccccC----CchhcCCccccccHHHHHHHHHHHHHHHhcC
Q 012481 422 -SSDLGYNPAR----DMFKCGDVDPLKHVPSEFAKATSMISLKNAI 462 (462)
Q Consensus 422 -~~~~G~d~~~----dm~~~gI~dP~~v~~~al~~A~~~A~~lL~i 462 (462)
++++|||+.+ ||++.|||||+.||.++|+.|+++|++||||
T Consensus 474 ~~~~~Gid~~~g~~~d~~~~gV~dp~~~k~~~i~~A~e~a~~iLrI 519 (527)
T cd03335 474 HLKWYGLDLINGKVRDNLEAGVLEPTVSKIKSLKFATEAAITILRI 519 (527)
T ss_pred cCceEeEECCCCcccchhhccceecHHHHHHHHHHHHHHHHHHHhh
Confidence 3568999987 9999999999999999999999999999997
No 19
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.3e-76 Score=630.98 Aligned_cols=404 Identities=18% Similarity=0.239 Sum_probs=352.4
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012481 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (462)
Q Consensus 5 ~~~~lk~~~~~~p~~~~~~~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~i~~G~~~a~~~~~~~ 83 (462)
..+|||+|++.||+++++ +++|++||+++||||||+++|+++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 51 G~tIlk~i~~~hP~akll------~~~a~~qd~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~ 124 (517)
T TIGR02342 51 GATILKQMGVIHPAAKML------VELSKAQDIEAGDGTTSVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKI 124 (517)
T ss_pred HHHHHHhccccChHHHHH------HHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999966 8899999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC--CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhcc---Ccc-----eeEe-cCCCccceeEEEeeE
Q 012481 84 LDCQARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWE---NDL-----ITIF-DRKALYNELNFVKGM 146 (462)
Q Consensus 84 L~~~~~~v~--~~~~l~~vA~ts~~~------~~~l~~li~~a~~~vg~---~~~-----I~v~-~g~~~~d~~~~~~G~ 146 (462)
|+++++|++ +.+.|.++|+||+++ .+.|++++++|+..++. ++. |++. ..++..+++++++|+
T Consensus 125 L~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l~~~a~~~v~~~~~~~~~~~~~i~i~k~~Ggs~~ds~li~Gi 204 (517)
T TIGR02342 125 LDEMSIPVDLSDREILIKSATTSLSSKVVSQYSSLLAPLAVDAVLKVIDPENDKNVDLNDIKVVKKLGGTIDDTELIEGL 204 (517)
T ss_pred HHHhccccCccCHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHhccccCCccCHHHeeEEeccCCChhhcEEEeeE
Confidence 999999986 778899999999874 34579999999999975 233 3443 333445689999999
Q ss_pred EEeccccCC-ccccccccceeeecCceEEEeccccC-------------C-----------HHHHHHHHHHHHHcCCCEE
Q 012481 147 KLEWGLKSP-YFFTHKNKKECVLDGALVLIYDTKIS-------------N-----------SNVIRQASLPCMMQGQSLL 201 (462)
Q Consensus 147 ~~~~g~~~~-~~~~~~~~~~~~l~~~~Il~~d~~i~-------------~-----------~~~i~~~le~i~~~g~~lv 201 (462)
+|+++|.++ .|+ ..++||+|++++.+++ + .+++.++++++.+.|+|||
T Consensus 205 vl~k~~~~~~~mp-------k~i~n~kI~ll~~~Le~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lv 277 (517)
T TIGR02342 205 VFTQKASRSAGGP-------TRIEKAKIGLIQFQISPPKTDMENQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVL 277 (517)
T ss_pred EEeccccccCCCC-------ccccCCcEEEEecCCCCCcccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 999999883 442 2466777777665432 2 1346788899999999999
Q ss_pred EEecCcchhhHhhHHhhccCCCCcEEEEeecCcchhhhhhHHHHHHHhCCEEecCCCCCCccCCCCCCceeeeEEE-E--
Q 012481 202 VVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI-A-- 278 (462)
Q Consensus 202 ii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tG~~i~~~~~~~~~~~~~~~~LG~a~~v~-i-- 278 (462)
+++++|++++++.++.|.+.+ .+|++|++. ++++|+|||++|||+++++ ++++++++||+|+.|+ +
T Consensus 278 i~~~~I~~~~l~~l~~~~l~~-~~I~av~~v-----~~~~LerIa~~tGa~ii~~-----~~~l~~~~LG~~~~v~~~~~ 346 (517)
T TIGR02342 278 LIQKSILRDAVNDLALHFLAK-MKIMVVKDI-----EREEVEFICKTIGCKPIAS-----IDHFTADKLGSAELVEEVTT 346 (517)
T ss_pred EECCCcccccccHHHHHHHhh-CCceEEecC-----CHHHHHHHHHHHCCEEEcc-----hhhcCcccCcCCceEEEEEE
Confidence 999999877777777777666 789999987 5777999999999999996 8899999999999997 3
Q ss_pred ecceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHc
Q 012481 279 TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE 358 (462)
Q Consensus 279 ~~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~a~~~ 358 (462)
+++.++++.+++++ |+.+||+|||+|+++++|++|+++||++++|+++++
T Consensus 347 ~~~~~~~i~~~~~~------------------------------~~~~tIllrG~t~~~l~E~er~i~DAl~~v~~~~~~ 396 (517)
T TIGR02342 347 DGGKIIKITGIQNA------------------------------GKTVTVLLRGSNKLVIDEAERSLHDALCVIRSLVKK 396 (517)
T ss_pred CCeEEEEEEccCCC------------------------------CceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 35567778777653 367999999999999999999999999999999998
Q ss_pred -CCcCChhHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCccccccC-
Q 012481 359 -GIVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPAR- 431 (462)
Q Consensus 359 -gvVpGGGa~el~~s~~L~~~~~~-~~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~~---~~~~~G~d~~~- 431 (462)
++|||||++|+++|++|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|+.. +++++|||+.+
T Consensus 397 ~~~VpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g 476 (517)
T TIGR02342 397 RGLIPGGGAPEIEIAIKLSKLARTMKGVESYCVRAFADALEVIPYTLAENAGLNPIDVVTELRNRHANGEKYAGISVRKG 476 (517)
T ss_pred CCEEECcCHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCccceecCCC
Confidence 59999999999999999999765 889999999999999999999999999999999 999762 45689999987
Q ss_pred ---CchhcCCccccccHHHHHHHHHHHHHHHhcC
Q 012481 432 ---DMFKCGDVDPLKHVPSEFAKATSMISLKNAI 462 (462)
Q Consensus 432 ---dm~~~gI~dP~~v~~~al~~A~~~A~~lL~i 462 (462)
||++.|||||+.||+++|+.|+++|++||+|
T Consensus 477 ~i~d~~~~gI~dp~~vk~~ai~~A~e~a~~iL~i 510 (517)
T TIGR02342 477 GITDMLEEEVLQPLLVTTSAVTLASETVRMILKI 510 (517)
T ss_pred CccchhhccceEcHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999997
No 20
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.9e-76 Score=629.70 Aligned_cols=404 Identities=18% Similarity=0.213 Sum_probs=354.3
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012481 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (462)
Q Consensus 5 ~~~~lk~~~~~~p~~~~~~~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~i~~G~~~a~~~~~~~ 83 (462)
..+|||+|++.||+++++ +++|++||+++||||||+++||++|++++.++++ |+||+.|++||++|.+.++++
T Consensus 50 G~tIlk~l~~~hp~a~ll------~~~a~~q~~~~GDGTtt~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~ 123 (515)
T cd03338 50 GATILKQMSVLHPAAKML------VELSKAQDIEAGDGTTSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEI 123 (515)
T ss_pred HHHHHHhCcCcCHHHHHH------HHHHHHHHhHhcCCcchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999966 7899999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC--CHHHHHHHHHHhcC------CChhHHHHHHHHHHhhccCcc----------eeEecCCCccceeEEEee
Q 012481 84 LDCQARKIT--TFEEIAQVGTTAAN------GDGEIGELIAKVFEKGWENDL----------ITIFDRKALYNELNFVKG 145 (462)
Q Consensus 84 L~~~~~~v~--~~~~l~~vA~ts~~------~~~~l~~li~~a~~~vg~~~~----------I~v~~g~~~~d~~~~~~G 145 (462)
|++++.|++ +.+.|.++|+||++ +++.+++++++|+.+++.++. |....|++.. ++++++|
T Consensus 124 L~~~a~~v~~~~~~~l~~va~ts~~sK~~~~~~~~ls~li~~A~~~v~~~~~~~~~d~~~i~i~~~~Ggs~~-ds~lv~G 202 (515)
T cd03338 124 LDSMSIPVDLNDRESLIKSATTSLNSKVVSQYSSLLAPIAVDAVLKVIDPATATNVDLKDIRIVKKLGGTIE-DTELVDG 202 (515)
T ss_pred HHHhccCCCCCCHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHhhcccccCcCCHHHeEEEEecCCChh-hceeeee
Confidence 999999986 77889999999998 357899999999999987652 4445677765 4699999
Q ss_pred EEEeccccCCccccccccceeeecCceEEEecccc-------------CCH-----------HHHHHHHHHHHHcCCCEE
Q 012481 146 MKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKI-------------SNS-----------NVIRQASLPCMMQGQSLL 201 (462)
Q Consensus 146 ~~~~~g~~~~~~~~~~~~~~~~l~~~~Il~~d~~i-------------~~~-----------~~i~~~le~i~~~g~~lv 201 (462)
++|+++|.+|++. |+ .++||++++++.++ +++ +++.++++.+.+.|.|||
T Consensus 203 iv~~k~~~~~~~~--p~----~i~n~ki~ll~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lv 276 (515)
T cd03338 203 LVFTQKASKKAGG--PT----RIEKAKIGLIQFCLSPPKTDMDNNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVL 276 (515)
T ss_pred EEEeccccCcCCC--Cc----cccCCcEEEEeccccccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 9999999997631 11 35566665554432 122 456788999999999999
Q ss_pred EEecCcchhhHhhHHhhccCCCCcEEEEeecCcchhhhhhHHHHHHHhCCEEecCCCCCCccCCCCCCceeeeEEEEe--
Q 012481 202 VVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIAT-- 279 (462)
Q Consensus 202 ii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tG~~i~~~~~~~~~~~~~~~~LG~a~~v~i~-- 279 (462)
+++++|++++++.++.|.+.+ .+|++|++. ++++|+|||++|||+++++ ++++++++||+|++|++.
T Consensus 277 i~~~~i~~~~v~~l~~~~l~~-~~I~av~~~-----~~~~LerIa~~tGa~ii~s-----l~~l~~~~LG~~~~v~~~~~ 345 (515)
T cd03338 277 LIQKSILRDAVSDLALHFLAK-LKIMVVKDI-----EREEIEFICKTIGCKPVAS-----IDHFTEDKLGSADLVEEVSL 345 (515)
T ss_pred EECCCcccccccHHHHHHHHH-CCceEEecC-----CHHHHHHHHHHHCCEEecc-----cccCCHhhCCCCceEEEEEE
Confidence 999999777777777766665 789999987 5777999999999999996 889999999999999864
Q ss_pred -cceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHc
Q 012481 280 -MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE 358 (462)
Q Consensus 280 -~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~a~~~ 358 (462)
+++++++.+++++ ++.|||+|||+|+.+++|++|+++||+|++++++++
T Consensus 346 g~~~~~~i~~~~~~------------------------------~~~~TIllrG~t~~~l~e~~r~i~Dal~~~~~~~~~ 395 (515)
T cd03338 346 GDGKIVKITGVKNP------------------------------GKTVTILVRGSNKLVLDEAERSLHDALCVIRCLVKK 395 (515)
T ss_pred CCeEEEEEEecCCC------------------------------CceEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4568888887642 367999999999999999999999999999999999
Q ss_pred C-CcCChhHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCccccccC-
Q 012481 359 G-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPAR- 431 (462)
Q Consensus 359 g-vVpGGGa~el~~s~~L~~~~~~-~~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~~---~~~~~G~d~~~- 431 (462)
| +|||||++|+++|+.|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++. ++.++|||+.+
T Consensus 396 ~~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~G~d~~~g 475 (515)
T cd03338 396 RALIPGGGAPEIEIALQLSEWARTLTGVEQYCVRAFADALEVIPYTLAENAGLNPISIVTELRNRHAQGEKNAGINVRKG 475 (515)
T ss_pred CCEEECCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCccceeccCC
Confidence 9 9999999999999999998765 889999999999999999999999999999999 999762 45689999986
Q ss_pred ---CchhcCCccccccHHHHHHHHHHHHHHHhcC
Q 012481 432 ---DMFKCGDVDPLKHVPSEFAKATSMISLKNAI 462 (462)
Q Consensus 432 ---dm~~~gI~dP~~v~~~al~~A~~~A~~lL~i 462 (462)
||++.|||||+.||+++|+.|+++|++||+|
T Consensus 476 ~~~d~~~~gI~dp~~vk~~~l~~A~~~a~~iL~I 509 (515)
T cd03338 476 AITNILEENVVQPLLVSTSAITLATETVRMILKI 509 (515)
T ss_pred CccchhhcCceecHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999997
No 21
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=8.8e-76 Score=628.92 Aligned_cols=402 Identities=17% Similarity=0.204 Sum_probs=356.1
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012481 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (462)
Q Consensus 5 ~~~~lk~~~~~~p~~~~~~~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~i~~G~~~a~~~~~~~ 83 (462)
..+|||+|++.||+++++ +++|++||+++||||||++||+++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 54 G~tIlk~i~~~hP~akll------~~~a~~qd~~~GDGTTt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~ 127 (536)
T TIGR02340 54 GATILKLLEVEHPAAKIL------VELAQLQDREVGDGTTSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKY 127 (536)
T ss_pred HHHHHHHhcccChHHHHH------HHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999865 8899999999999999999999999999999999 999999999999999999999
Q ss_pred Hhcc-ccccC--CHHHHHHHHHHhcC------CChhHHHHHHHHHHhhc---cCcc-------eeE--ecCCCccceeEE
Q 012481 84 LDCQ-ARKIT--TFEEIAQVGTTAAN------GDGEIGELIAKVFEKGW---ENDL-------ITI--FDRKALYNELNF 142 (462)
Q Consensus 84 L~~~-~~~v~--~~~~l~~vA~ts~~------~~~~l~~li~~a~~~vg---~~~~-------I~v--~~g~~~~d~~~~ 142 (462)
|+++ ++|++ +.+++.++|+++++ +++.|++++++|+..++ .+|. |++ ..|++. +++++
T Consensus 128 L~~~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~ls~l~~~A~~~v~~~~~~g~~~~~~~~I~i~k~~G~s~-~~s~~ 206 (536)
T TIGR02340 128 IKENLSVSVDELGREALINVAKTSMSSKIIGLDSDFFSNIVVDAVLAVKMTNENGETKYPIKAVNILKAHGGSA-RESYL 206 (536)
T ss_pred HHHhhccCCCcccHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHhcccccCccccchHHeEEEEecCCCc-cccEE
Confidence 9985 88887 67889999999987 46789999999999986 3342 333 467776 68999
Q ss_pred EeeEEEeccccCCccccccccceeeecCceEEEeccccCCHH------------------------HHHHHHHHHHHcCC
Q 012481 143 VKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSN------------------------VIRQASLPCMMQGQ 198 (462)
Q Consensus 143 ~~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Il~~d~~i~~~~------------------------~i~~~le~i~~~g~ 198 (462)
++|++|+++|.+|.|+ .+++||+|++++.+++..+ .+.+.++.+.+.|.
T Consensus 207 i~Gi~i~~~~~~~~m~-------~~~~n~kIli~~~~L~~~~~~~~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~ 279 (536)
T TIGR02340 207 VKGYALNCTRASQQMP-------KRIKKAKIACLDFNLQKQKMALGVQIVVDDPAKLEGIRQREADITKERIKKILKAGA 279 (536)
T ss_pred EEEEEEecccCCCCCc-------ceecCCcEEEEecCCCCCcccCceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999998653 4789999999998875332 23466777888999
Q ss_pred CEEEEecCcchhhHhhHHhhccCCCCcEEEEeecCcchhhhhhHHHHHHHhCCEEecCCCCC-CccCCCCCCceeeeEEE
Q 012481 199 SLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGM-NSTYFVPLKLGSCKRVI 277 (462)
Q Consensus 199 ~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tG~~i~~~~~~~-~~~~~~~~~LG~a~~v~ 277 (462)
+||+++++|++.++++|..++ +++++++ ++++|+|||++|||+++++..++ ..+++++++||+|++|+
T Consensus 280 ~lvi~~k~I~~~a~~~L~k~~------I~~i~rv-----~~~~LerIa~~tGa~ii~~~~~l~~~~~~~~~~LG~~~~v~ 348 (536)
T TIGR02340 280 NVVLTTGGIDDMCLKYFVEAG------AMGVRRC-----KKEDLKRIAKATGGTLVSTLADLEGEETFDASYLGFADEVV 348 (536)
T ss_pred CEEEeCCCCcHHHHHHHHHCC------cEEEecC-----CHHHHHHHHHHhCCEEecchhhcCccccccccccccCceEE
Confidence 999999999999999999754 8899988 46679999999999999985443 33557778899999998
Q ss_pred ---EecceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHH
Q 012481 278 ---ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQA 354 (462)
Q Consensus 278 ---i~~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~ 354 (462)
+++++++++++++++ ..|||+|||+|+.+++|++|+++||+|++|+
T Consensus 349 ~~~ig~~~~~~i~~~~~~-------------------------------~~~TIlirG~t~~~l~E~~r~i~DAl~~~~~ 397 (536)
T TIGR02340 349 EERIADDECILIKGTKGR-------------------------------KSASIILRGANDFMLDEMERSLHDALCVVKR 397 (536)
T ss_pred EEEECCeEEEEEEcCCCC-------------------------------CEEEEEEeCCcHHHHHHHHHHHHHHHHHHHH
Confidence 788899999988765 3689999999999999999999999999999
Q ss_pred HHHcC-CcCChhHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---C-------
Q 012481 355 AKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---D------- 421 (462)
Q Consensus 355 a~~~g-vVpGGGa~el~~s~~L~~~~~~-~~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~~---~------- 421 (462)
++++| +|||||++|+++|..|++++.. ++++++++++|++||+.||++||+|||+|+.++ .+|++. +
T Consensus 398 ~~~~~~vVpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~fa~AL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~~~ 477 (536)
T TIGR02340 398 TLESNSVVPGGGAVETALSIYLENFATTLGSREQLAIAEFAEALLIIPKVLAVNAALDSTELVAKLRAYHAAAQLKPEKK 477 (536)
T ss_pred HhcCCCEEECCCHHHHHHHHHHHHHhhhCCChhHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCcccccc
Confidence 99999 9999999999999999998765 889999999999999999999999999999999 998752 1
Q ss_pred -CCCccccccC----CchhcCCccccccHHHHHHHHHHHHHHHhcC
Q 012481 422 -SSDLGYNPAR----DMFKCGDVDPLKHVPSEFAKATSMISLKNAI 462 (462)
Q Consensus 422 -~~~~G~d~~~----dm~~~gI~dP~~v~~~al~~A~~~A~~lL~i 462 (462)
+.++|||+.+ ||++.|||||+.||.++|+.|+++|++||+|
T Consensus 478 ~~~~~Gid~~~g~~~d~~~~gI~Dp~~~k~~~l~~A~e~a~~iL~I 523 (536)
T TIGR02340 478 HLKWYGLDLSNGKIRDNKEAGVLEPAVSKVKSLKFATEAAITILRI 523 (536)
T ss_pred cCceEeEEccCCccccchhccceecHHHHHHHHHHHHHHHHHHHhh
Confidence 3468999987 9999999999999999999999999999997
No 22
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1e-75 Score=627.16 Aligned_cols=397 Identities=19% Similarity=0.209 Sum_probs=348.5
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012481 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (462)
Q Consensus 5 ~~~~lk~~~~~~p~~~~~~~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~i~~G~~~a~~~~~~~ 83 (462)
..+|||+|++.||+++++ +++|++||+++||||||+++||++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 69 G~tIlk~l~~~hP~akll------~~~a~~qd~~~GDGTttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~ 142 (532)
T TIGR02343 69 GATILSQMDVDNPIAKLM------VELSKSQDDEIGDGTTGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEH 142 (532)
T ss_pred HHHHHHHccCCCHHHHHH------HHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999966 8899999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC----CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccC--c-----ceeEe--cCCCccceeEEEe
Q 012481 84 LDCQARKIT----TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN--D-----LITIF--DRKALYNELNFVK 144 (462)
Q Consensus 84 L~~~~~~v~----~~~~l~~vA~ts~~~------~~~l~~li~~a~~~vg~~--~-----~I~v~--~g~~~~d~~~~~~ 144 (462)
|+++++|++ +.+.|.++|++++++ .+.|++++++|+..+... + .|++. .|++.. ++++++
T Consensus 143 L~~~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~ls~i~~~av~~i~~~~~~~~d~~~I~i~ki~Ggs~~-ds~~v~ 221 (532)
T TIGR02343 143 LEEISEEISDDNNNKEPLIQAAKTSLGSKIVSKCHRRFAEIAVDAVLMVADMERRDVDFDLIKVEGKVGGSLE-DTKLIK 221 (532)
T ss_pred HHHhccccCcCCCCHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhhhcCCCcCCHHHeeEEEecCCCcc-cceeEe
Confidence 999999874 367899999998874 346888888888877431 1 24443 677765 569999
Q ss_pred eEEEeccccCCccccccccceeeecCceEEEecc-----------c--cCCHHHH-----------HHHHHHHHHcCCCE
Q 012481 145 GMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDT-----------K--ISNSNVI-----------RQASLPCMMQGQSL 200 (462)
Q Consensus 145 G~~~~~g~~~~~~~~~~~~~~~~l~~~~Il~~d~-----------~--i~~~~~i-----------~~~le~i~~~g~~l 200 (462)
|++|+++|.+|+|++ .+++|+|++++. + +++++++ .++++++.+.|+||
T Consensus 222 Gi~i~~~~~~~~m~~-------~~~n~kI~l~~~~le~~~~~~~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~l 294 (532)
T TIGR02343 222 GIIIDKDFSHPQMPK-------EVKDAKIAILTCPFEPPKPKTKHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANI 294 (532)
T ss_pred eEEEecCcCCCCCCe-------eecCCcEEEEEeeccccccccceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 999999999999865 345566665553 3 5666655 78899999999999
Q ss_pred EEEecCcchhhHhhHHhhccCCCCcEEEEeecCcchhhhhhHHHHHHHhCCEEecCCCCCCccCCCCCCceeeeEEEE--
Q 012481 201 LVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA-- 278 (462)
Q Consensus 201 vii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tG~~i~~~~~~~~~~~~~~~~LG~a~~v~i-- 278 (462)
||++++|++.++++|..|+ +.+||+++ +++|+|||++|||+++++ ++++++++||+|++|+.
T Consensus 295 vi~~~~I~~~al~~L~~~~------i~~v~~~~-----~~~l~~Ia~~tGa~~i~~-----l~~~~~~~LG~a~~v~~~~ 358 (532)
T TIGR02343 295 VICQWGFDDEANHLLLQND------LPAVRWVG-----GHELELIAIATGGRIVPR-----FEELSEDKLGKAGLVREIS 358 (532)
T ss_pred EEeCCCccHHHHHHHHHCC------cEEEEcCC-----HHHHHHHHHHhCCEEecc-----cccCCHhHCcccceEEEEE
Confidence 9999999999999999875 67899884 555999999999999996 89999999999999873
Q ss_pred -ec--ceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHH
Q 012481 279 -TM--DNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAA 355 (462)
Q Consensus 279 -~~--~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~a 355 (462)
+. ++++++++++++ .++||+|||+|+++++|+||+++||++++|++
T Consensus 359 ig~~~~~~~~i~~~~~~-------------------------------~~~TIllrG~t~~~l~E~er~l~DAl~~v~~~ 407 (532)
T TIGR02343 359 FGTTKDRMLVIEQCKNS-------------------------------KAVTIFIRGGNKMIIEEAKRSIHDALCVVRNL 407 (532)
T ss_pred ecCCcceEEEEECCCCC-------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33 478999998876 35899999999999999999999999999999
Q ss_pred HHc-CCcCChhHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc----CCCCcccc
Q 012481 356 KEE-GIVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ----DSSDLGYN 428 (462)
Q Consensus 356 ~~~-gvVpGGGa~el~~s~~L~~~~~~-~~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~~----~~~~~G~d 428 (462)
+++ ++|||||++|+++|++|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++. ++.++|+|
T Consensus 408 i~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~fa~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid 487 (532)
T TIGR02343 408 IKNSRIVYGGGAAEISCSLAVSQEADKYSGVEQYAIRAFADALEEIPMALAENSGLDPIGTLSDLKSLQMKEKNPHLGVD 487 (532)
T ss_pred HhCCCEEeCcCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCccCee
Confidence 998 59999999999999999999775 889999999999999999999999999999999 998742 24679999
Q ss_pred ccC----CchhcCCccccccHHHHHHHHHHHHHHHhcC
Q 012481 429 PAR----DMFKCGDVDPLKHVPSEFAKATSMISLKNAI 462 (462)
Q Consensus 429 ~~~----dm~~~gI~dP~~v~~~al~~A~~~A~~lL~i 462 (462)
+.+ ||++.|||||+.||+++|+.|+++|++||+|
T Consensus 488 ~~~g~i~d~~~~gV~Dp~~vk~~al~~A~e~a~~iL~i 525 (532)
T TIGR02343 488 CLGDGTNDMKEQGVFETLIGKKQQIQLATQLVRMILKI 525 (532)
T ss_pred CCCCccccchhccCeecHHHHHHHHHHHHHHHHHHHhH
Confidence 976 9999999999999999999999999999986
No 23
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=9e-76 Score=627.83 Aligned_cols=397 Identities=19% Similarity=0.228 Sum_probs=349.6
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012481 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (462)
Q Consensus 5 ~~~~lk~~~~~~p~~~~~~~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~i~~G~~~a~~~~~~~ 83 (462)
..+|||+|++.||+++++ +++|++||+++||||||+++||++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 65 G~tIlk~l~~~hP~akll------~~~a~~q~~~~GDGTtt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 138 (526)
T cd03339 65 GATILEKMDVDHQIAKLL------VELSKSQDDEIGDGTTGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEH 138 (526)
T ss_pred HHHHHHHhcccCHHHHHH------HHHHHhhhhhhcCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999966 8899999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC----CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccC-------cceeEe--cCCCccceeEEEe
Q 012481 84 LDCQARKIT----TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN-------DLITIF--DRKALYNELNFVK 144 (462)
Q Consensus 84 L~~~~~~v~----~~~~l~~vA~ts~~~------~~~l~~li~~a~~~vg~~-------~~I~v~--~g~~~~d~~~~~~ 144 (462)
|++++.|++ +.+.|.++|++|+++ .+.|++++++|+..+... ..|++. .|++. +++++++
T Consensus 139 L~~~~~~~~~~~~~~~~l~~ia~tsl~sk~~~~~~~~~s~i~v~av~~i~~~~~~~~d~~~I~i~ki~Ggs~-~dS~~v~ 217 (526)
T cd03339 139 LEEIADKIEFSPDNKEPLIQTAMTSLGSKIVSRCHRQFAEIAVDAVLSVADLERKDVNFELIKVEGKVGGRL-EDTKLVK 217 (526)
T ss_pred HHHhccccCCCcccHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhhcCCCccchHHeEEEEecCcCH-HHcceee
Confidence 999999885 467899999999874 256889999998877431 124443 67665 4689999
Q ss_pred eEEEeccccCCccccccccceeeecCceEEEecc-----------c--cCCHHH-----------HHHHHHHHHHcCCCE
Q 012481 145 GMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDT-----------K--ISNSNV-----------IRQASLPCMMQGQSL 200 (462)
Q Consensus 145 G~~~~~g~~~~~~~~~~~~~~~~l~~~~Il~~d~-----------~--i~~~~~-----------i~~~le~i~~~g~~l 200 (462)
|++|+++|.+|+|++ .++||+|++++. + ++++++ +.++++++.+.|+||
T Consensus 218 Givi~~~~~~~~m~~-------~~~n~kI~ll~~~le~~~~~~~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~l 290 (526)
T cd03339 218 GIVIDKDFSHPQMPK-------EVKDAKIAILTCPFEPPKPKTKHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANL 290 (526)
T ss_pred eEEEecccCCCCCCc-------eecCCCEEEEEecccCCccccceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
Confidence 999999999999976 345566555553 2 556655 678899999999999
Q ss_pred EEEecCcchhhHhhHHhhccCCCCcEEEEeecCcchhhhhhHHHHHHHhCCEEecCCCCCCccCCCCCCceeeeEEEE--
Q 012481 201 LVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA-- 278 (462)
Q Consensus 201 vii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tG~~i~~~~~~~~~~~~~~~~LG~a~~v~i-- 278 (462)
|+++++|+++++++|..|+ +.+||+++ +++|+|||++|||+++++ ++++++++||+|+.|+.
T Consensus 291 vi~~~~I~~~al~~L~~~~------I~av~~v~-----~~~LerIa~~tGa~ii~~-----l~~l~~~~LG~~~~v~~~~ 354 (526)
T cd03339 291 VICQWGFDDEANHLLLQNG------LPAVRWVG-----GVEIELIAIATGGRIVPR-----FEDLSPEKLGKAGLVREIS 354 (526)
T ss_pred EEeCCCCCHHHHHHHHHCC------CEEEEeCC-----HHHHHHHHHHhCCEEecc-----hhhCChhhcccCceEEEEE
Confidence 9999999999999999765 77999973 455999999999999986 89999999999999873
Q ss_pred -e--cceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHH
Q 012481 279 -T--MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAA 355 (462)
Q Consensus 279 -~--~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~a 355 (462)
+ .+.++++++|+++ +.+||+|||+|+.+++|++|+++||++++|++
T Consensus 355 ig~~~~~~~~i~g~~~~-------------------------------~~~TIllrG~t~~~l~E~er~l~DAl~~~~~~ 403 (526)
T cd03339 355 FGTTKDKMLVIEGCPNS-------------------------------KAVTIFIRGGNKMIIEEAKRSLHDALCVVRNL 403 (526)
T ss_pred ecCCCcEEEEEECCCCC-------------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
Confidence 2 3578899998765 46899999999999999999999999999999
Q ss_pred HHcC-CcCChhHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc----CCCCcccc
Q 012481 356 KEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ----DSSDLGYN 428 (462)
Q Consensus 356 ~~~g-vVpGGGa~el~~s~~L~~~~~~-~~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~~----~~~~~G~d 428 (462)
+++| +|||||++|+++|+.|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|+.. ++.++|||
T Consensus 404 ~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~h~~~~~~~~Gid 483 (526)
T cd03339 404 IRDNRIVYGGGAAEISCSLAVEKAADKCSGIEQYAMRAFADALESIPLALAENSGLNPIETLSEVKARQVKEKNPHLGID 483 (526)
T ss_pred hhCCCEEeCCCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCCeEeee
Confidence 9998 9999999999999999999765 889999999999999999999999999999999 999742 24578999
Q ss_pred ccC----CchhcCCccccccHHHHHHHHHHHHHHHhcC
Q 012481 429 PAR----DMFKCGDVDPLKHVPSEFAKATSMISLKNAI 462 (462)
Q Consensus 429 ~~~----dm~~~gI~dP~~v~~~al~~A~~~A~~lL~i 462 (462)
+.+ ||++.|||||+.||+++|+.|+++|++||+|
T Consensus 484 ~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~i 521 (526)
T cd03339 484 CLGRGTNDMKEQKVFETLISKKQQILLATQVVKMILKI 521 (526)
T ss_pred cCCCccCchhhcCceecHHHHHHHHHHHHHHHHHHhhh
Confidence 987 9999999999999999999999999999997
No 24
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=6.6e-75 Score=620.92 Aligned_cols=400 Identities=16% Similarity=0.178 Sum_probs=358.3
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012481 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (462)
Q Consensus 5 ~~~~lk~~~~~~p~~~~~~~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~i~~G~~~a~~~~~~~ 83 (462)
..+|||+|++.||+++++ +++|++||+++||||||+|+|+++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 58 G~tIlk~l~~~hP~akll------~~~a~~q~~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 131 (522)
T cd03340 58 GATILKLLDIVHPAAKTL------VDIAKSQDAEVGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEK 131 (522)
T ss_pred HHHHHHHccccCHHHHHH------HHHHHHhHhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999999966 8899999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCC------HHHHHHHHHHhcC------CChhHHHHHHHHHHhhccCc---ceeEe--cCCCccceeEEEeeE
Q 012481 84 LDCQARKITT------FEEIAQVGTTAAN------GDGEIGELIAKVFEKGWEND---LITIF--DRKALYNELNFVKGM 146 (462)
Q Consensus 84 L~~~~~~v~~------~~~l~~vA~ts~~------~~~~l~~li~~a~~~vg~~~---~I~v~--~g~~~~d~~~~~~G~ 146 (462)
|+++++|+++ .+.|.++|+++++ +++.|++++++|+.++++++ .|++. .|++.. ++++++|+
T Consensus 132 L~~~s~~~~~~~~~~~~~~l~~ia~t~l~sK~~~~~~~~l~~l~~~A~~~v~~~~~~~~I~i~~i~Ggs~~-ds~lv~Gi 210 (522)
T cd03340 132 IKEIAVNIDKEDKEEQRELLEKCAATALNSKLIASEKEFFAKMVVDAVLSLDDDLDLDMIGIKKVPGGSLE-DSQLVNGV 210 (522)
T ss_pred HHHhhcccCcccccccHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHhcccCChhHheEeeecCCChh-hceeeeeE
Confidence 9999998864 5669999999876 36789999999999998765 34443 566654 68899999
Q ss_pred EEeccccCCccccccccceeeecCceEEEecccc-------------CCHHH-----------HHHHHHHHHHcCCCEEE
Q 012481 147 KLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKI-------------SNSNV-----------IRQASLPCMMQGQSLLV 202 (462)
Q Consensus 147 ~~~~g~~~~~~~~~~~~~~~~l~~~~Il~~d~~i-------------~~~~~-----------i~~~le~i~~~g~~lvi 202 (462)
+|+++|.+|+|.+.|+ .++||+|++++.++ +++.+ +.+.++.+.+.|.++++
T Consensus 211 v~~k~~~~~~~~~~~~----~~~n~kIll~~~~Le~~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl 286 (522)
T cd03340 211 AFKKTFSYAGFEQQPK----KFKNPKILLLNVELELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVL 286 (522)
T ss_pred EEecccCccccccCCc----cccCCeEEEEeCCCCCCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999998865443 58999999999874 44433 56667888899999999
Q ss_pred EecCcchhhHhhHHhhccCCCCcEEEEeecCcchhhhhhHHHHHHHhCCEEecCCCCCCccCCCCCCceeeeEEE---Ee
Q 012481 203 VAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---AT 279 (462)
Q Consensus 203 i~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tG~~i~~~~~~~~~~~~~~~~LG~a~~v~---i~ 279 (462)
+++.|++.++++|..++ |++++++ ++++|+|||++|||+++++ ++++++++||+|++|+ ++
T Consensus 287 ~~~~i~d~a~~~l~~~~------I~~~~~v-----~~~~l~rIa~~tGa~ii~~-----l~~l~~~~LG~~~~v~~~~ig 350 (522)
T cd03340 287 SKLPIGDLATQYFADRD------IFCAGRV-----PEEDLKRVAQATGGSIQTT-----VSNITDDVLGTCGLFEERQVG 350 (522)
T ss_pred eCCCCcHHHHHHHHHCC------cEEEEeC-----CHHHHHHHHHHHCCEEeec-----cccCCccccccceEEEEEEEC
Confidence 99999999999999754 7899988 4667999999999999997 8999999999999997 66
Q ss_pred cceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcC
Q 012481 280 MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG 359 (462)
Q Consensus 280 ~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~a~~~g 359 (462)
+++++++.+|..+ ..+||++||+|+.+++|.+|+++||++++|+++++|
T Consensus 351 ~~~~~~~~~~~~~-------------------------------~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~i~~~ 399 (522)
T cd03340 351 GERYNIFTGCPKA-------------------------------KTCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKND 399 (522)
T ss_pred CEEEEEEECCCCC-------------------------------ceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 7789999998765 358999999999999999999999999999999997
Q ss_pred -CcCChhHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CC-CCccccccC-
Q 012481 360 -IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DS-SDLGYNPAR- 431 (462)
Q Consensus 360 -vVpGGGa~el~~s~~L~~~~~~-~~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~~---~~-~~~G~d~~~- 431 (462)
+|||||++|++++.+|++++.. ++++++++++|++||+.||++||+|||+|+.++ .+|++. ++ .++|||+.+
T Consensus 400 ~vvpGGG~~E~~ls~~l~~~~~~~~~~~~~~~~~fa~aL~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g 479 (522)
T cd03340 400 SVVAGGGAIEMELSKYLRDYSRTIAGKQQLVINAFAKALEIIPRQLCDNAGFDATDILNKLRQKHAQGGGKWYGVDINNE 479 (522)
T ss_pred CEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCeeeeeCCCC
Confidence 9999999999999999999765 899999999999999999999999999999999 999763 33 578999987
Q ss_pred ---CchhcCCccccccHHHHHHHHHHHHHHHhcC
Q 012481 432 ---DMFKCGDVDPLKHVPSEFAKATSMISLKNAI 462 (462)
Q Consensus 432 ---dm~~~gI~dP~~v~~~al~~A~~~A~~lL~i 462 (462)
||++.|||||+.||+++|+.|+++|++||+|
T Consensus 480 ~i~d~~~~gV~dp~~vk~~~i~~A~e~a~~iL~i 513 (522)
T cd03340 480 GIADNFEAFVWEPSLVKINALTAATEAACLILSV 513 (522)
T ss_pred cccchhhcCceEcHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999986
No 25
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=5.4e-75 Score=622.00 Aligned_cols=397 Identities=13% Similarity=0.143 Sum_probs=352.5
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012481 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (462)
Q Consensus 5 ~~~~lk~~~~~~p~~~~~~~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~i~~G~~~a~~~~~~~ 83 (462)
..+|||+|++.||+++++ +++|++||+++||||||+|+|+++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 58 G~tIl~~l~~~hP~akll------~~~a~~q~~~~GDGTtt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~ 131 (525)
T TIGR02344 58 GNAILREIDVAHPAAKSM------IELSRTQDEEVGDGTTSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSV 131 (525)
T ss_pred HHHHHHhccCCCHHHHHH------HHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999966 8899999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC--CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccCc-----------ceeEe--cCCCccceeEE
Q 012481 84 LDCQARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWEND-----------LITIF--DRKALYNELNF 142 (462)
Q Consensus 84 L~~~~~~v~--~~~~l~~vA~ts~~~------~~~l~~li~~a~~~vg~~~-----------~I~v~--~g~~~~d~~~~ 142 (462)
|+++++|++ +.+.|.++|+|+.++ ++.|++++++|+..+++++ .|+++ +|++..| +++
T Consensus 132 L~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~d-S~l 210 (525)
T TIGR02344 132 LEEISIPVDVNDDAAMLKLIQSCIGTKFVSRWSDLMCDLALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIED-SCV 210 (525)
T ss_pred HHHhccccCCCCHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhccccCCCCccChhhceEEEEecCCChHh-cCc
Confidence 999999986 567899999877653 4789999999999997643 14554 4777654 899
Q ss_pred EeeEEEeccccCCccccccccceeeecCceEEEeccccCC-------------HHHHHHHHH-----------HHHHcCC
Q 012481 143 VKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISN-------------SNVIRQASL-----------PCMMQGQ 198 (462)
Q Consensus 143 ~~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Il~~d~~i~~-------------~~~i~~~le-----------~i~~~g~ 198 (462)
++|+.|++++.++.|+ .+++||+|++++.+++. ++++.++++ ++.+.|.
T Consensus 211 v~Gvvi~k~~~~~~m~-------~~~~n~kIlll~~~Le~~~~~~~~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~ 283 (525)
T TIGR02344 211 LKGVMINKDVTHPKMR-------RYIENPRIVLLDCPLEYKKGESQTNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKP 283 (525)
T ss_pred ccceEEecccCCCCCc-------cccCCCCEEEEecccccccccccceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999998777553 47899999999988754 466666554 7778888
Q ss_pred CEEEEecCcchhhHhhHHhhccCCCCcEEEEeecCcchhhhhhHHHHHHHhCCEEecCCCCCCccCCCCCCcee-eeEEE
Q 012481 199 SLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGS-CKRVI 277 (462)
Q Consensus 199 ~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tG~~i~~~~~~~~~~~~~~~~LG~-a~~v~ 277 (462)
+|+++++.|++.++++|..+ +|+++++. ++++|+|||++|||+++++ ++++++++||+ |+.|+
T Consensus 284 ~vIi~~k~I~dla~~~l~~~------~I~av~~v-----~~~~LerIa~~tGa~ii~~-----l~~l~~~~lG~~~~~v~ 347 (525)
T TIGR02344 284 DLVITEKGVSDLAQHYLLKA------NISAIRRV-----RKTDNNRIARACGATIVNR-----PEELRESDVGTGCGLFE 347 (525)
T ss_pred CEEEeCCCccHHHHHHHhHC------CceEEecC-----CHHHHHHHHHHhCCeEecc-----hhhCCHhhcCCcCCEEE
Confidence 88899999999999988863 58999987 5777999999999999996 88999999999 99887
Q ss_pred E---ecceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHH
Q 012481 278 A---TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQA 354 (462)
Q Consensus 278 i---~~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~ 354 (462)
+ ++++++++++++++ ..|||+|||+|+.+++|+||+++||++++++
T Consensus 348 ~~~ig~~~~~~~~g~~~~-------------------------------~~~TIlLrG~t~~~l~E~er~l~DAl~~vk~ 396 (525)
T TIGR02344 348 VKKIGDEYFTFFTECKDP-------------------------------KACTILLRGASKDVLNEIERNLQDAMAVARN 396 (525)
T ss_pred EEEECCeEEEEEEcCCCC-------------------------------CEEEEEEEcCCHHHHHHHHHHHHHHHHHHHH
Confidence 6 56789999998765 3689999999999999999999999999999
Q ss_pred HHHc-CCcCChhHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---C-CCCccc
Q 012481 355 AKEE-GIVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---D-SSDLGY 427 (462)
Q Consensus 355 a~~~-gvVpGGGa~el~~s~~L~~~~~~-~~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~~---~-~~~~G~ 427 (462)
++++ ++|||||++|+++|.+|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++. + +.++|+
T Consensus 397 ~~~~~~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gi 476 (525)
T TIGR02344 397 VLLEPKLLPGGGATEMAVSVYLAKKASKLEGVQQWPYRAVADALEIIPRTLAQNCGVNVIRTLTELRAKHAQEGNCTWGI 476 (525)
T ss_pred HHhCCCcccCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCCeEeE
Confidence 9998 59999999999999999998765 889999999999999999999999999999999 999762 2 467899
Q ss_pred cccC----CchhcCCccccccHHHHHHHHHHHHHHHhcC
Q 012481 428 NPAR----DMFKCGDVDPLKHVPSEFAKATSMISLKNAI 462 (462)
Q Consensus 428 d~~~----dm~~~gI~dP~~v~~~al~~A~~~A~~lL~i 462 (462)
|+.+ ||++.|||||+.||+++|+.|+++|++||+|
T Consensus 477 d~~~g~~~d~~~~gV~dp~~vk~~~l~~A~e~a~~iL~i 515 (525)
T TIGR02344 477 DGETGKIVDMKEKGIWEPLAVKLQTYKTAIESACMLLRI 515 (525)
T ss_pred ECCCCccccchhccceecHHHHHHHHHHHHHHHHHHHhh
Confidence 9987 9999999999999999999999999999986
No 26
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=7.9e-75 Score=619.77 Aligned_cols=400 Identities=15% Similarity=0.159 Sum_probs=354.4
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012481 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (462)
Q Consensus 5 ~~~~lk~~~~~~p~~~~~~~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~i~~G~~~a~~~~~~~ 83 (462)
..||||+|++.||+++++ +++|++||+++||||||+|+||++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 59 G~TIlk~i~~~hP~a~ll------~~~a~~q~~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 132 (522)
T TIGR02345 59 GATILKLLDIVHPAAKTL------VDIAKSQDSEVGDGTTSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEK 132 (522)
T ss_pred HHHHHHHhcccChHHHHH------HHHHHHHHHHhCCCchhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999998866 8899999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC-----CHHHHHHHHHHhcC------CChhHHHHHHHHHHhhccCc----ceeE--ecCCCccceeEEEeeE
Q 012481 84 LDCQARKIT-----TFEEIAQVGTTAAN------GDGEIGELIAKVFEKGWEND----LITI--FDRKALYNELNFVKGM 146 (462)
Q Consensus 84 L~~~~~~v~-----~~~~l~~vA~ts~~------~~~~l~~li~~a~~~vg~~~----~I~v--~~g~~~~d~~~~~~G~ 146 (462)
|+++++|++ +.+.|.++|+|+++ +++.|++++++|+.+++.++ .|.+ ..|++.. ++.+++|+
T Consensus 133 L~~~s~~~~~~~~~~~~~l~~va~tsl~sK~~~~~~~~l~~l~~~A~~~v~~~~~~~~~I~i~ki~Ggs~~-ds~~v~Gi 211 (522)
T TIGR02345 133 LKEIAVTIDEVKGEQREVLEKCAATALNSKLIAHEKEFFSKMIVDAVLQLDIDDLDLKLIGVKKVQGGSLQ-DSVLVNGV 211 (522)
T ss_pred HHHhccCcCCcccccHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhccCChhHheEEeecCCCHH-hcceecce
Confidence 999999987 45789999999976 46889999999999998642 2333 2676665 57899999
Q ss_pred EEeccccCCccccccccceeeecCceEEEeccccC-------------CHHH-----------HHHHHHHHHHcCCCEEE
Q 012481 147 KLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKIS-------------NSNV-----------IRQASLPCMMQGQSLLV 202 (462)
Q Consensus 147 ~~~~g~~~~~~~~~~~~~~~~l~~~~Il~~d~~i~-------------~~~~-----------i~~~le~i~~~g~~lvi 202 (462)
+|+++|.+|+|.+.| ..++||+|+++|.+++ ++++ +...++.+.+.|.++++
T Consensus 212 v~~~~~~~~~~~~~~----~~~~n~kIll~~~~Le~~~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~ 287 (522)
T TIGR02345 212 AFKKTFSYAGFEQQP----KKFANPKILLLNVELELKAEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVL 287 (522)
T ss_pred EEecccCccccccCC----ceeccceEEEEecCcccCccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 999999999986644 3689999999998764 2333 34456667788999999
Q ss_pred EecCcchhhHhhHHhhccCCCCcEEEEeecCcchhhhhhHHHHHHHhCCEEecCCCCCCccCCCCCCceeeeEEEE---e
Q 012481 203 VAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA---T 279 (462)
Q Consensus 203 i~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tG~~i~~~~~~~~~~~~~~~~LG~a~~v~i---~ 279 (462)
++++|++.++++|..+ +|++++++. +++++++|++|||+++++ ++++++++||+|+.|+. +
T Consensus 288 ~~~~i~d~~~~~L~~~------~I~~~~~v~-----~~dl~ria~~tga~ii~~-----~~~l~~~~LG~~~~ie~~~~~ 351 (522)
T TIGR02345 288 SKLPIGDLATQYFADH------NIFCAGRVS-----DEDLKRVVKACGGSIQST-----TSDLEADVLGTCALFEERQIG 351 (522)
T ss_pred eCCCccHHHHHHHHHC------CcEEEecCC-----HHHHHHHHHHhCCeEEcc-----hhhCChhhccCCceEEEEEEC
Confidence 9999999999998875 488999983 556999999999999997 89999999999999874 4
Q ss_pred cceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHc-
Q 012481 280 MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE- 358 (462)
Q Consensus 280 ~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~a~~~- 358 (462)
+++++++.|++++ ..|||+|||+|+++++|++|+++||++++|+++++
T Consensus 352 ~~r~~~~~g~~~~-------------------------------~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~~~~~ 400 (522)
T TIGR02345 352 SERYNYFTGCPHA-------------------------------KTCTIILRGGAEQFIEEAERSLHDAIMIVRRALKAR 400 (522)
T ss_pred CeEEEEEEcCCCC-------------------------------ceEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 6678999888655 36899999999999999999999999999999998
Q ss_pred CCcCChhHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCccccccC--
Q 012481 359 GIVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPAR-- 431 (462)
Q Consensus 359 gvVpGGGa~el~~s~~L~~~~~~-~~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~~---~~~~~G~d~~~-- 431 (462)
|+|||||++|+++++.|++++.. ++++++++++|++||+.||++||+|||+|+.++ .+|++. ++.++|||+.+
T Consensus 401 ~vvpGGG~~e~~ls~~l~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~~~ 480 (522)
T TIGR02345 401 KIVAGGGAIEMELSKILREHSKKIDGKQQLIIEAFAKALEIIPRSLCENAGFDSIEILNKLRSRHAKGGKWYGVDINTED 480 (522)
T ss_pred CEEeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceeCCCCc
Confidence 69999999999999999998765 889999999999999999999999999999999 999763 45679999987
Q ss_pred --CchhcCCccccccHHHHHHHHHHHHHHHhcC
Q 012481 432 --DMFKCGDVDPLKHVPSEFAKATSMISLKNAI 462 (462)
Q Consensus 432 --dm~~~gI~dP~~v~~~al~~A~~~A~~lL~i 462 (462)
||++.|||||+.||+++|+.|+++|++||+|
T Consensus 481 i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~i 513 (522)
T TIGR02345 481 IGDNFENFVWEPLLVKKNALKAAFEAACTILSI 513 (522)
T ss_pred ccchhhcCceEcHHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999999999986
No 27
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.1e-75 Score=622.44 Aligned_cols=396 Identities=14% Similarity=0.168 Sum_probs=344.7
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012481 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (462)
Q Consensus 5 ~~~~lk~~~~~~p~~~~~~~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~i~~G~~~a~~~~~~~ 83 (462)
..+|||+|++.||+++++ +++|++||+++||||||+|||+++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 60 G~tIlk~i~~~hP~akll------~e~a~sqd~~~GDGTTt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 133 (531)
T TIGR02346 60 AATILRELEVQHPAAKLL------VMASEMQENEIGDGTNLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEV 133 (531)
T ss_pred HHHHHHhccccCHHHHHH------HHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999866 8899999999999999999999999999999999 999999999999999999999
Q ss_pred Hhcccc-ccC---CHHHHHHHHHHhcC-----CChhHHHHHHHHHHhhccCc--ce-----eEe--cCCCccceeEEEee
Q 012481 84 LDCQAR-KIT---TFEEIAQVGTTAAN-----GDGEIGELIAKVFEKGWEND--LI-----TIF--DRKALYNELNFVKG 145 (462)
Q Consensus 84 L~~~~~-~v~---~~~~l~~vA~ts~~-----~~~~l~~li~~a~~~vg~~~--~I-----~v~--~g~~~~d~~~~~~G 145 (462)
|++++. +++ +.+.|.++|+++.+ +++.|++++++|+.+++.++ .+ ++. .|++.. ++++++|
T Consensus 134 L~~~~~~~~~~~~~~~~l~~i~~tsl~sK~~~~~~~ls~l~~~Ai~~v~~~~~~~~~~~~I~i~ki~G~s~~-ds~li~G 212 (531)
T TIGR02346 134 LEELVVWEVEDVRNKKELIKALKASISSKQYGNEDFLAQLVAKACSTVMPKNPENFNVDNIRVSKIMGGSIS-NSEVLKG 212 (531)
T ss_pred HHHhccccCCCCCCHHHHHHHHHHHhccccCchHHHHHHHHHHHHHHHhhcCCCcCChhHeeEEEecCCChh-hceeEee
Confidence 999986 664 46789999887764 37889999999999998654 33 332 566654 7999999
Q ss_pred EEEeccccCCccccccccceeeecCceEEEecccc-------------CCH-----------HHHHHHHHHHHHcCCCEE
Q 012481 146 MKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKI-------------SNS-----------NVIRQASLPCMMQGQSLL 201 (462)
Q Consensus 146 ~~~~~g~~~~~~~~~~~~~~~~l~~~~Il~~d~~i-------------~~~-----------~~i~~~le~i~~~g~~lv 201 (462)
++|++++.+ + | ..++||+|++++.++ +++ +++.++++.+.+.|+|||
T Consensus 213 i~~~~~~~~--~---~----k~i~n~kI~l~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lv 283 (531)
T TIGR02346 213 MVFNREAEG--S---V----KRVKNAKVAVFSCPLDTATTETKGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVI 283 (531)
T ss_pred eEEeccCCC--C---c----eeccCCCEEEEecCcCCCcccCceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEE
Confidence 999999321 1 1 246777777776542 222 346788999999999999
Q ss_pred EEecCcchhhHhhHHhhccCCCCcEEEEeecCcchhhhhhHHHHHHHhCCEEecCCCCCCccCCCCCCceeeeEEEE---
Q 012481 202 VVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIA--- 278 (462)
Q Consensus 202 ii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tG~~i~~~~~~~~~~~~~~~~LG~a~~v~i--- 278 (462)
|++++|++.++++|.. .+|+|||+|+++ +|+|||.+|||+++++ ++++++++||+|++|++
T Consensus 284 i~~~~I~d~~~~~l~~------~~I~av~~~~~~-----~l~~Ia~~tGa~ii~~-----l~~~~~~~LG~a~~v~~~~i 347 (531)
T TIGR02346 284 VTGGSVGDMALHYCEK------YNIMVLKIPSKF-----ELRRLCKTVGATPLAR-----LGAPQPEEIGYVDSVYVSEI 347 (531)
T ss_pred EECCCcCHHHHHHHHH------CCcEEEecCCHH-----HHHHHHHHHCCEEecc-----cccCCHhHccccceEEEEEE
Confidence 9999999999998875 459999999644 5999999999999986 88999999999999975
Q ss_pred ecceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHc
Q 012481 279 TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE 358 (462)
Q Consensus 279 ~~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~a~~~ 358 (462)
++++++++.++.. .++++||+|||+|+++++|++|+++||+|++|+++++
T Consensus 348 g~~~~~~i~~~~~------------------------------~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k~ai~~ 397 (531)
T TIGR02346 348 GGQKVTVFKQENG------------------------------DSKISTIILRGSTKNLLDDIERAIDDGVNVIKALVKD 397 (531)
T ss_pred CCEEEEEEEccCC------------------------------CCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4567888887652 2468999999999999999999999999999999999
Q ss_pred C-CcCChhHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCccccccC-
Q 012481 359 G-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPAR- 431 (462)
Q Consensus 359 g-vVpGGGa~el~~s~~L~~~~~~-~~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~~---~~~~~G~d~~~- 431 (462)
| +|||||++|+++|..|++++.. ++++++++++|++||+.||++||+|||+|+.++ .+|+.. ++.++|||+.+
T Consensus 398 ~~vVpGGG~~e~~ls~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~~ 477 (531)
T TIGR02346 398 NRFLPGAGATEIELALRLKKYANKLPGLDQYAIKKFAEAFEIIPRTLAENAGLNPNEVIPKLYAAHKKGNTSSGIDIEAE 477 (531)
T ss_pred CCEEECcCHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeeeCC
Confidence 9 9999999999999999998765 889999999999999999999999999999999 999763 45678999864
Q ss_pred -----CchhcCCccccccHHHHHHHHHHHHHHHhcC
Q 012481 432 -----DMFKCGDVDPLKHVPSEFAKATSMISLKNAI 462 (462)
Q Consensus 432 -----dm~~~gI~dP~~v~~~al~~A~~~A~~lL~i 462 (462)
||++.|||||+.||+++|+.|+++|++||+|
T Consensus 478 ~~~i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~i 513 (531)
T TIGR02346 478 SDGVKDASEAGIYDNLATKKWAIKLATEAAVTVLRV 513 (531)
T ss_pred CccccChhhcCceEcHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999987
No 28
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=9.3e-74 Score=610.84 Aligned_cols=396 Identities=18% Similarity=0.228 Sum_probs=349.5
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012481 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (462)
Q Consensus 5 ~~~~lk~~~~~~p~~~~~~~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~i~~G~~~a~~~~~~~ 83 (462)
..+|||+|++.||+++++ +++|++||+++||||||+|+||++||+++.++++ |+||+.|++||++|.+.++++
T Consensus 57 G~tIlk~l~~~hP~akll------~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~ 130 (517)
T cd03336 57 GATILKSIGVDNPAAKVL------VDISKVQDDEVGDGTTSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREA 130 (517)
T ss_pred HHHHHHHccCcChHHHHH------HHHHHHHHhHhCCChhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999866 8899999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC-----CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccC---cceeEe--cCCCccceeEEEeeEE
Q 012481 84 LDCQARKIT-----TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN---DLITIF--DRKALYNELNFVKGMK 147 (462)
Q Consensus 84 L~~~~~~v~-----~~~~l~~vA~ts~~~------~~~l~~li~~a~~~vg~~---~~I~v~--~g~~~~d~~~~~~G~~ 147 (462)
|+++++|++ +.+.|.++|+|+.++ ++.|++++++|+.+++.. ..|++. +|++. +++.+++|++
T Consensus 131 L~~~~~~~~~~~~~~~~~l~~ia~t~lssk~~~~~~~~l~~l~~~A~~~v~~~~~~~~i~i~ki~G~s~-~ds~l~~G~v 209 (517)
T cd03336 131 LLSSAVDHSSDEEAFREDLLNIARTTLSSKILTQDKEHFAELAVDAVLRLKGSGNLDAIQIIKKLGGSL-KDSYLDEGFL 209 (517)
T ss_pred HHHhccCcccccchhHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHhhccCCccceeEEEccCCCc-cceEEEeeEE
Confidence 999999884 246799999876543 578999999999998632 235554 57666 4689999999
Q ss_pred EeccccCCccccccccceeeecCceEEEeccccC--------------CHHHH-----------HHHHHHHHHcCCCEEE
Q 012481 148 LEWGLKSPYFFTHKNKKECVLDGALVLIYDTKIS--------------NSNVI-----------RQASLPCMMQGQSLLV 202 (462)
Q Consensus 148 ~~~g~~~~~~~~~~~~~~~~l~~~~Il~~d~~i~--------------~~~~i-----------~~~le~i~~~g~~lvi 202 (462)
+++++.++ + +..++||+|+++|.+++ +++++ .+.++.+.+.|.++++
T Consensus 210 ~~~~~~~~-~-------~~~~~n~kIli~~~~le~~~~~~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~ 281 (517)
T cd03336 210 LDKKIGVN-Q-------PKRIENAKILIANTPMDTDKIKIFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFI 281 (517)
T ss_pred EecccCCC-C-------CCeeccccEEEEecCCCcccccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 99986543 2 34799999999998765 44444 2346678899999999
Q ss_pred EecCcchhhHhhHHhhccCCCCcEEEEeecCcchhhhhhHHHHHHHhCCEEecCCCCCCccCCCCCCceeeeEEE---Ee
Q 012481 203 VAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---AT 279 (462)
Q Consensus 203 i~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tG~~i~~~~~~~~~~~~~~~~LG~a~~v~---i~ 279 (462)
+++.|++.++++|..+ +|++||+|+ +++|+|||++|||+++++ ++++++++||+|+.|+ ++
T Consensus 282 ~~~~I~~~~~~~l~~~------~I~av~~v~-----~~~L~rIa~~tGa~ii~~-----l~~~~~~~LG~~~~v~~~~ig 345 (517)
T cd03336 282 NRQLIYNYPEQLFADA------GIMAIEHAD-----FDGVERLALVTGGEIAST-----FDHPELVKLGTCKLIEEIMIG 345 (517)
T ss_pred eCCCccHHHHHHHHHC------CcEEEecCC-----HHHHHHHHHHhCCEEecc-----cCCCCcccccccceEEEEEEC
Confidence 9999999999998874 589999995 445999999999999986 8999999999999986 45
Q ss_pred cceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcC
Q 012481 280 MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG 359 (462)
Q Consensus 280 ~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~a~~~g 359 (462)
+++++++.+|+++ +.|||+|||+|+.+++|.+|+++||++++|+++++|
T Consensus 346 ~~~~~~~~~~~~~-------------------------------~~~TI~lrG~t~~~l~E~er~i~Dal~~~~~~i~~~ 394 (517)
T cd03336 346 EDKLIRFSGVAAG-------------------------------EACTIVLRGASQQILDEAERSLHDALCVLAQTVKDT 394 (517)
T ss_pred CeEEEEEEccCCC-------------------------------ceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 6789999988754 579999999999999999999999999999999997
Q ss_pred -CcCChhHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCccccccC--
Q 012481 360 -IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPAR-- 431 (462)
Q Consensus 360 -vVpGGGa~el~~s~~L~~~~~~-~~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~~---~~~~~G~d~~~-- 431 (462)
+|||||++|+++|+.|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++. ++.++|||+.+
T Consensus 395 ~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~ALe~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~ 474 (517)
T cd03336 395 RVVLGGGCSEMLMAKAVEELAKKTPGKKSLAIEAFAKALRQLPTIIADNAGYDSAELVAQLRAAHYNGNTTAGLDMRKGT 474 (517)
T ss_pred CEEeCCCHHHHHHHHHHHHHhhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCceeeecCCCC
Confidence 9999999999999999999775 899999999999999999999999999999999 999762 45679999987
Q ss_pred --CchhcCCccccccHHHHHHHHHHHHHHHhcC
Q 012481 432 --DMFKCGDVDPLKHVPSEFAKATSMISLKNAI 462 (462)
Q Consensus 432 --dm~~~gI~dP~~v~~~al~~A~~~A~~lL~i 462 (462)
||++.|||||+.||+++|+.|+++|++||+|
T Consensus 475 ~~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~i 507 (517)
T cd03336 475 VGDMKELGITESFKVKRQVLLSASEAAEMILRV 507 (517)
T ss_pred ccchhhcCceecHHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999999999986
No 29
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=3.3e-74 Score=616.07 Aligned_cols=396 Identities=18% Similarity=0.224 Sum_probs=349.2
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012481 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (462)
Q Consensus 5 ~~~~lk~~~~~~p~~~~~~~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~i~~G~~~a~~~~~~~ 83 (462)
..||||+|++.||+++++ +++|++||+++||||||+|+||++||+++.++++ |+||+.|++||++|.+.++++
T Consensus 69 G~TIlk~i~~~hP~akll------~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~ 142 (533)
T PTZ00212 69 GATILKSVWLDNPAAKIL------VDISKTQDEEVGDGTTSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKA 142 (533)
T ss_pred HHHHHHhccCcCHHHHHH------HHHHHhhhhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 469999999999999966 8899999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCC-----HHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccC---cceeE--ecCCCccceeEEEeeEE
Q 012481 84 LDCQARKITT-----FEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN---DLITI--FDRKALYNELNFVKGMK 147 (462)
Q Consensus 84 L~~~~~~v~~-----~~~l~~vA~ts~~~------~~~l~~li~~a~~~vg~~---~~I~v--~~g~~~~d~~~~~~G~~ 147 (462)
|+++++|+++ .+.|.++|+|+.++ .+.|++++.+|+..+... ..|++ .+|++. +++.+++|++
T Consensus 143 L~~~s~~~~~~~~~~~~~l~~va~t~l~sk~~~~~~~~l~~i~~~av~~i~~~~~~~~I~i~ki~Ggsi-~ds~lv~G~v 221 (533)
T PTZ00212 143 LEEIAFDHGSDEEKFKEDLLNIARTTLSSKLLTVEKDHFAKLAVDAVLRLKGSGNLDYIQIIKKPGGTL-RDSYLEDGFI 221 (533)
T ss_pred HHHhCcCCCccchhhHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHhccCCccceEEEEecCcCc-cccEEEEeEE
Confidence 9999999864 56899999876653 357999999999888432 12444 367766 4689999999
Q ss_pred EeccccCCccccccccceeeecCceEEEecccc--------------CCHHHH-----------HHHHHHHHHcCCCEEE
Q 012481 148 LEWGLKSPYFFTHKNKKECVLDGALVLIYDTKI--------------SNSNVI-----------RQASLPCMMQGQSLLV 202 (462)
Q Consensus 148 ~~~g~~~~~~~~~~~~~~~~l~~~~Il~~d~~i--------------~~~~~i-----------~~~le~i~~~g~~lvi 202 (462)
+++++.++ + +.+++||+|+++|.++ ++++++ ....+.+.+.|.++++
T Consensus 222 ~~~~~~~~-~-------~~~i~n~kIll~~~~Le~~k~~~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv 293 (533)
T PTZ00212 222 LEKKIGVG-Q-------PKRLENCKILVANTPMDTDKIKIYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFI 293 (533)
T ss_pred EecccCCC-C-------CccccCCcEEEEeCCCCCCcccccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 99986543 2 3479999999999886 555443 2346678889999999
Q ss_pred EecCcchhhHhhHHhhccCCCCcEEEEeecCcchhhhhhHHHHHHHhCCEEecCCCCCCccCCCCCCceeeeEEE---Ee
Q 012481 203 VAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---AT 279 (462)
Q Consensus 203 i~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tG~~i~~~~~~~~~~~~~~~~LG~a~~v~---i~ 279 (462)
++++|++.++++|..+ +|++||+++ +++++|||++|||+++++ ++++++++||+|++|+ ++
T Consensus 294 ~~~~I~d~a~~~L~~~------~I~avr~v~-----~~~l~rIa~~tGa~iis~-----l~~~~~~~LG~~~~v~~~~ig 357 (533)
T PTZ00212 294 NRQLIYNYPEQLFAEA------GIMAIEHAD-----FDGMERLAAALGAEIVST-----FDTPEKVKLGHCDLIEEIMIG 357 (533)
T ss_pred eCCCccHHHHHHHHHC------CCEEEecCC-----HHHHHHHHHHhCCEEeec-----CCCCCHHHccCCceEEEEEEC
Confidence 9999999999998875 489999873 456999999999999996 8999999999999998 77
Q ss_pred cceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcC
Q 012481 280 MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG 359 (462)
Q Consensus 280 ~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~a~~~g 359 (462)
+++++++++|..+ +.|||+|||+|+.+++|+||+++||++++|+++++|
T Consensus 358 ~~~~~~~~~~~~~-------------------------------~~~TI~lrG~t~~~l~E~er~i~DAl~vv~~~i~~~ 406 (533)
T PTZ00212 358 EDKLIRFSGCAKG-------------------------------EACTIVLRGASTHILDEAERSLHDALCVLSQTVKDT 406 (533)
T ss_pred CeEEEEEEccCCC-------------------------------CEEEEEEECCChhHHHHHHHHHHHHHHHHHHHhhCC
Confidence 8889999887643 579999999999999999999999999999999997
Q ss_pred -CcCChhHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCccccccC--
Q 012481 360 -IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPAR-- 431 (462)
Q Consensus 360 -vVpGGGa~el~~s~~L~~~~~~-~~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~---~~~~~~G~d~~~-- 431 (462)
+|||||++|+++|+.|++++.. ++++++++++|++||+.||++||+|||+|+.++ .+|++ .+++++|||+.+
T Consensus 407 ~vVpGGGa~e~~ls~~L~~~~~~~~~~~~~~i~~~a~aL~~ip~~La~NaG~d~~~vl~~l~~~h~~~~~~~G~d~~~g~ 486 (533)
T PTZ00212 407 RVVLGGGCSEMLMANAVEELAKKVEGKKSLAIEAFAKALRQIPTIIADNGGYDSAELVSKLRAEHYKGNKTAGIDMEKGT 486 (533)
T ss_pred CEeeCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCccceeccCCc
Confidence 9999999999999999999775 899999999999999999999999999999999 99975 345679999987
Q ss_pred --CchhcCCccccccHHHHHHHHHHHHHHHhcC
Q 012481 432 --DMFKCGDVDPLKHVPSEFAKATSMISLKNAI 462 (462)
Q Consensus 432 --dm~~~gI~dP~~v~~~al~~A~~~A~~lL~i 462 (462)
||++.|||||+.||+++|+.|+++|++||+|
T Consensus 487 i~d~~~~gI~dp~~vk~~al~~A~e~a~~iL~i 519 (533)
T PTZ00212 487 VGDMKELGITESYKVKLSQLCSATEAAEMILRV 519 (533)
T ss_pred ccchhhccceecHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999986
No 30
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=5.1e-74 Score=607.76 Aligned_cols=380 Identities=13% Similarity=0.155 Sum_probs=341.4
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012481 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (462)
Q Consensus 5 ~~~~lk~~~~~~p~~~~~~~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~i~~G~~~a~~~~~~~ 83 (462)
..+|||+|++.||+++++ +++|++||+++||||||+++|+++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 58 G~tIlk~l~~~hP~a~ll------~~~a~~q~~~~GDGTtt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~ 131 (480)
T cd03337 58 GNAILREIDVAHPAAKSM------IELSRTQDEEVGDGTTSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKI 131 (480)
T ss_pred HHHHHHhccccChHHHHH------HHHHHhHHHHhCCCcchhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 478999999999999966 8899999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccC--CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccC--c---------ceeEe--cCCCccceeEE
Q 012481 84 LDCQARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN--D---------LITIF--DRKALYNELNF 142 (462)
Q Consensus 84 L~~~~~~v~--~~~~l~~vA~ts~~~------~~~l~~li~~a~~~vg~~--~---------~I~v~--~g~~~~d~~~~ 142 (462)
|+++++|++ +.+.|.++|+++.++ ++.+++++++|+..++++ + .|+++ +|++.. ++++
T Consensus 132 L~~~~~~~~~~~~~~l~~i~~t~l~sK~~~~~~~~ls~lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~-ds~l 210 (480)
T cd03337 132 LEEISIPVDVNDRAQMLKIIKSCIGTKFVSRWSDLMCNLALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIE-DSRV 210 (480)
T ss_pred HHHhccccccCCHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHhhccccCCCCCcCChhhceEEEEecCCCHH-hccc
Confidence 999999987 778899999998873 457999999999999753 2 14454 476654 5999
Q ss_pred EeeEEEeccccCCccccccccceeeecCceEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCcchhhHhhHHhhccCC
Q 012481 143 VKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCT 222 (462)
Q Consensus 143 ~~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Il~~d~~i~~~~~i~~~le~i~~~g~~lvii~~~i~~~al~~l~~n~~~~ 222 (462)
++|++|++++.+|.|+ .+++||+|++++.+++. |++++++|++.++++|..|
T Consensus 211 i~Gvvi~k~~~~~~m~-------~~~~n~kIlll~~~Le~-----------------lvi~~k~I~d~al~~L~~~---- 262 (480)
T cd03337 211 LDGVMLNKDVTHPKMR-------RRIENPRIVLLDCPLEY-----------------LVITEKGVSDLAQHYLVKA---- 262 (480)
T ss_pred ccceEEeccCCCCCCC-------cEecCCCEEEEecCcce-----------------EEEeCCCccHHHHHHHHHC----
Confidence 9999999999887653 47899999999998775 8899999999999999986
Q ss_pred CCcEEEEeecCcchhhhhhHHHHHHHhCCEEecCCCCCCccCCCCCCcee-eeEEEE---ecceEEEEcCCCChhhHHHH
Q 012481 223 TEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGS-CKRVIA---TMDNVVIIGGSGELVDIQER 298 (462)
Q Consensus 223 ~~~i~avk~~~~g~~r~~~ledla~~tG~~i~~~~~~~~~~~~~~~~LG~-a~~v~i---~~~~~~~~~g~~~~~~i~~r 298 (462)
+|++|++. ++++|+|||++|||+++++ ++++++++||+ |+.++. +++.++++++++++
T Consensus 263 --~I~~v~~v-----~~~~L~rIa~~tGa~ii~~-----~~~l~~~~LG~~~~~~~~~~~~~~~~~~i~~~~~~------ 324 (480)
T cd03337 263 --GITALRRV-----RKTDNNRIARACGATIVNR-----PEELTESDVGTGAGLFEVKKIGDEYFTFITECKDP------ 324 (480)
T ss_pred --CcEEEEeC-----CHHHHHHHHHHHCCEEecc-----hhhCCHHHcCCcccEEEEEEeCCeEEEEEEcCCCC------
Confidence 48999987 5667999999999999997 88999999999 455442 45678999988765
Q ss_pred HHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHc-CCcCChhHHHHHHHHHHHH
Q 012481 299 CEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE-GIVPGSGVALLYASKELDK 377 (462)
Q Consensus 299 ~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~a~~~-gvVpGGGa~el~~s~~L~~ 377 (462)
+.+||++||+|+.+++|.+|+++||++++++++++ ++|||||++|+++|.+|++
T Consensus 325 -------------------------~~~TIllrG~t~~~l~e~er~l~DAl~v~~~~~~~~~~vpGGGa~E~~ls~~l~~ 379 (480)
T cd03337 325 -------------------------KACTILLRGASKDVLNEVERNLQDAMAVARNIILNPKLVPGGGATEMAVSHALSE 379 (480)
T ss_pred -------------------------CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCCCHHHHHHHHHHHH
Confidence 46999999999999999999999999999999999 5999999999999999999
Q ss_pred hcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---C-CCCccccccC----CchhcCCccccccHHH
Q 012481 378 LQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---D-SSDLGYNPAR----DMFKCGDVDPLKHVPS 447 (462)
Q Consensus 378 ~~~~-~~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~~---~-~~~~G~d~~~----dm~~~gI~dP~~v~~~ 447 (462)
++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++. + +.++|+|+.+ ||++.|||||+.+|++
T Consensus 380 ~~~~~~~~~~~~~~~~a~al~~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~~Gid~~~g~i~d~~~~gV~dp~~vk~~ 459 (480)
T cd03337 380 KAKSIEGVEQWPYKAVASALEVIPRTLAQNCGANVIRTLTELRAKHAQGENSTWGIDGETGDIVDMKELGIWDPLAVKAQ 459 (480)
T ss_pred HhhcCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHccCCCeECeeccCCCcccchhccCeEcHHHHHH
Confidence 8775 899999999999999999999999999999999 999763 3 4578999987 9999999999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 012481 448 EFAKATSMISLKNAI 462 (462)
Q Consensus 448 al~~A~~~A~~lL~i 462 (462)
+|+.|+++|++||+|
T Consensus 460 ~l~~A~e~a~~iL~i 474 (480)
T cd03337 460 TYKTAIEAACMLLRI 474 (480)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999999987
No 31
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.8e-73 Score=605.75 Aligned_cols=396 Identities=18% Similarity=0.208 Sum_probs=345.9
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012481 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (462)
Q Consensus 5 ~~~~lk~~~~~~p~~~~~~~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~i~~G~~~a~~~~~~~ 83 (462)
..+|||+|++.||+++++ +++|++||+++||||||+|||+++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 58 G~tIlk~l~i~hP~akll------~~~a~~qd~~~GDGTTtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~ 131 (519)
T TIGR02341 58 GATILKSIGVDNPAAKVL------VDMSKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEA 131 (519)
T ss_pred HHHHHHHccCcChHHHHH------HHHHHHhHhhhCCchhHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 479999999999998866 8899999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCC-----HHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccC---cceeEe--cCCCccceeEEEeeEE
Q 012481 84 LDCQARKITT-----FEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN---DLITIF--DRKALYNELNFVKGMK 147 (462)
Q Consensus 84 L~~~~~~v~~-----~~~l~~vA~ts~~~------~~~l~~li~~a~~~vg~~---~~I~v~--~g~~~~d~~~~~~G~~ 147 (462)
|+++++|+++ .++|.++|+|++++ .+.|+++..+|+..+... ..|++. +|++. +++.+++|++
T Consensus 132 L~~~~~~~~~~~~~~~~~L~~ia~t~l~ski~~~~~~~~s~l~~~av~~i~~~~~~~~i~i~k~~G~s~-~~s~l~~G~v 210 (519)
T TIGR02341 132 LKKSSIDNGSDKTKFRDDLLNIARTTLSSKILSQHKDHFAQLAVDAVLRLKGSGNLDAIQIIKKLGGSL-NDSYLDEGFL 210 (519)
T ss_pred HHHhcccccCcccccHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCChhheEEEEccCCCc-ccceEEeeEE
Confidence 9999999853 47899999988874 246788888888877321 235665 57666 4688999999
Q ss_pred EeccccCCccccccccceeeecCceEEEeccccCC--------------HHHH-----------HHHHHHHHHcCCCEEE
Q 012481 148 LEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISN--------------SNVI-----------RQASLPCMMQGQSLLV 202 (462)
Q Consensus 148 ~~~g~~~~~~~~~~~~~~~~l~~~~Il~~d~~i~~--------------~~~i-----------~~~le~i~~~g~~lvi 202 (462)
+++++.++ + +..++||+|+++|.+++. ++++ ..+++.+.+.|.++++
T Consensus 211 ~~~~~~~~-~-------~~~~~n~~Ili~~~~Le~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~ 282 (519)
T TIGR02341 211 LEKKIGVN-Q-------PKRIENAKILIANTPMDTDKVKVFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFI 282 (519)
T ss_pred EeccCCCC-C-------ceeeccccEEEEecCCCCCccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEE
Confidence 99886432 2 337899999999987653 3222 2335678889999999
Q ss_pred EecCcchhhHhhHHhhccCCCCcEEEEeecCcchhhhhhHHHHHHHhCCEEecCCCCCCccCCCCCCceeeeEEE---Ee
Q 012481 203 VAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---AT 279 (462)
Q Consensus 203 i~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tG~~i~~~~~~~~~~~~~~~~LG~a~~v~---i~ 279 (462)
+++.|++.++++|..+ +|+++|+++ +++|+|||++|||+++++ ++++++++||+|+.|+ ++
T Consensus 283 ~~~~I~~~~~~~l~~~------~I~~v~~~~-----~~~l~~ia~~tGa~ii~~-----~~~~~~~~lG~~~~v~~~~ig 346 (519)
T TIGR02341 283 NRQLIYNYPEQLFADA------GVMAIEHAD-----FEGIERLALVTGGEIVST-----FDHPELVKLGSCDLIEEIMIG 346 (519)
T ss_pred ECCcCCHHHHHHHHHC------CcEEEecCC-----HHHHHHHHHHhCCEEecc-----cccCCccccccCceEEEEEEC
Confidence 9999999999988874 589999995 446999999999999996 8899999999999886 45
Q ss_pred cceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHc-
Q 012481 280 MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE- 358 (462)
Q Consensus 280 ~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~a~~~- 358 (462)
+++++++.+|+++ +.|||+|||+|+.+++|++|+++||++++|+++++
T Consensus 347 ~~~~~~~~~~~~~-------------------------------~~~TIllrG~t~~~l~E~er~i~Dal~~~~~~~~~~ 395 (519)
T TIGR02341 347 EDKLLKFSGVKLG-------------------------------EACTIVLRGATQQILDESERSLHDALCVLSQTVKES 395 (519)
T ss_pred CEEEEEEEcCCCC-------------------------------CEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 6789999988754 57999999999999999999999999999999998
Q ss_pred CCcCChhHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCccccccC--
Q 012481 359 GIVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPAR-- 431 (462)
Q Consensus 359 gvVpGGGa~el~~s~~L~~~~~~-~~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~~---~~~~~G~d~~~-- 431 (462)
++|||||++|+++|+.|++++.. ++++|+++++|++||+.||++||+|||+|+.++ .+|++. ++.++|||+.+
T Consensus 396 ~vvpGGGa~e~~ls~~l~~~~~~~~~~~~~~i~~~a~Ale~ip~~La~NaG~d~~~~l~~l~~~h~~~~~~~Gid~~~g~ 475 (519)
T TIGR02341 396 RTVLGGGCSEMLMSKAVAVEAQKVPGKEALAVEAFARALRQLPTIIADNAGFDSAELVAQLRAAHYNGNHTMGLDMEEGE 475 (519)
T ss_pred CEEeCCCHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCCccceecCCCc
Confidence 59999999999999999998765 899999999999999999999999999999999 999763 45678999986
Q ss_pred --CchhcCCccccccHHHHHHHHHHHHHHHhcC
Q 012481 432 --DMFKCGDVDPLKHVPSEFAKATSMISLKNAI 462 (462)
Q Consensus 432 --dm~~~gI~dP~~v~~~al~~A~~~A~~lL~i 462 (462)
||++.|||||+.||+++|+.|+++|++||+|
T Consensus 476 i~d~~~~gI~dp~~vk~~~l~~A~e~a~~iL~i 508 (519)
T TIGR02341 476 IADMRKLGIIESYKVKRAVVSSAAEAAEVILRV 508 (519)
T ss_pred ccchhhccceEcHHHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999999999986
No 32
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=6.4e-72 Score=590.62 Aligned_cols=382 Identities=17% Similarity=0.199 Sum_probs=337.2
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012481 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (462)
Q Consensus 5 ~~~~lk~~~~~~p~~~~~~~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~i~~G~~~a~~~~~~~ 83 (462)
..+|||+|++.||+++++ +++|++||+++||||||+++|+++||+++.++++ |+||+.|++||+.|.+.++++
T Consensus 50 G~tIlk~l~~~hP~a~ll------~~~a~~~~~~~GDGTTt~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~ 123 (472)
T cd03341 50 AATILRELEVQHPAAKLL------VMASQMQEEEIGDGTNLVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEI 123 (472)
T ss_pred HHHHHHhccccCHHHHHH------HHHHHHHhhhhCCChhhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 468999999999999866 8899999999999999999999999999999999 999999999999999999999
Q ss_pred Hhccccc-cC---CHHHHHHHHHHhcC-----CChhHHHHHHHHHHhhccC--cce-----eEe--cCCCccceeEEEee
Q 012481 84 LDCQARK-IT---TFEEIAQVGTTAAN-----GDGEIGELIAKVFEKGWEN--DLI-----TIF--DRKALYNELNFVKG 145 (462)
Q Consensus 84 L~~~~~~-v~---~~~~l~~vA~ts~~-----~~~~l~~li~~a~~~vg~~--~~I-----~v~--~g~~~~d~~~~~~G 145 (462)
|++++.+ +. +.+.+.++++++.+ +++.+++++++|+.+++++ |.+ ++. +|++.. ++++++|
T Consensus 124 L~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l~~l~~~a~~~~~~~~~~~~~~~~i~i~ki~Gg~~~-ds~lv~G 202 (472)
T cd03341 124 LEELVVYKIEDLRNKEEVSKALKTAIASKQYGNEDFLSPLVAEACISVLPENIGNFNVDNIRVVKILGGSLE-DSKVVRG 202 (472)
T ss_pred HHHhhccccCCccCHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHhhccCCcCChhHeEEEEecCCCcc-cceEEee
Confidence 9999865 43 45678888887753 3678999999999999865 433 332 576665 5799999
Q ss_pred EEEeccccCCccccccccceeeecCceEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCcchhhHhhHHhhccCCCCc
Q 012481 146 MKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEK 225 (462)
Q Consensus 146 ~~~~~g~~~~~~~~~~~~~~~~l~~~~Il~~d~~i~~~~~i~~~le~i~~~g~~lvii~~~i~~~al~~l~~n~~~~~~~ 225 (462)
++|++.+.. +..+++||+|++++.+++. |+|||+++++|+++++++|.. .+
T Consensus 203 iv~~~~~~~---------~~~~~~n~~Ili~~~~Le~--------------g~~lvi~~~~I~d~al~~l~~------~~ 253 (472)
T cd03341 203 MVFKREPEG---------SVKRVKKAKVAVFSCPFDI--------------GVNVIVAGGSVGDLALHYCNK------YG 253 (472)
T ss_pred EEEccccCC---------CceeccCCcEEEEeccccC--------------CCeEEEECCCCCHHHHHHHHH------CC
Confidence 999875321 1247899999999999886 889999999999999998664 45
Q ss_pred EEEEeecCcchhhhhhHHHHHHHhCCEEecCCCCCCccCCCCCCceeeeEEEEec---ceEEEEcCCCChhhHHHHHHHH
Q 012481 226 VCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATM---DNVVIIGGSGELVDIQERCEQL 302 (462)
Q Consensus 226 i~avk~~~~g~~r~~~ledla~~tG~~i~~~~~~~~~~~~~~~~LG~a~~v~i~~---~~~~~~~g~~~~~~i~~r~~~l 302 (462)
|+++|+|+ +++|+|||++|||+++++ ++++++++||+|++|++.+ ++++++.++++.
T Consensus 254 I~av~~~~-----~~~Le~Ia~~tGa~ii~~-----~~~l~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~---------- 313 (472)
T cd03341 254 IMVIKINS-----KFELRRLCRTVGATPLPR-----LGAPTPEEIGYCDSVYVEEIGDTKVVVFRQNKED---------- 313 (472)
T ss_pred eEEEEeCC-----HHHHHHHHHHhCCEEecc-----cccCCHhHCCCceEEEEEEECCeeEEEEEccCCC----------
Confidence 99999995 556999999999999987 8889999999999998654 789999887641
Q ss_pred HHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcC-CcCChhHHHHHHHHHHHHhcCC
Q 012481 303 RSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQTT 381 (462)
Q Consensus 303 ~~~l~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~a~~~g-vVpGGGa~el~~s~~L~~~~~~ 381 (462)
++.+||+|||+|+++++|+||+++||++++|+++++| +|||||++|++++..|++++..
T Consensus 314 --------------------~~~~TI~lrG~t~~~l~E~er~i~DAl~~~~~ai~~~~vVpGGG~~e~~ls~~l~~~~~~ 373 (472)
T cd03341 314 --------------------SKIATIVLRGATQNILDDVERAIDDGVNVFKSLTKDGRFVPGAGATEIELAKKLKEYGEK 373 (472)
T ss_pred --------------------CCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEEeCcCHHHHHHHHHHHHHhhc
Confidence 2679999999999999999999999999999999998 9999999999999999998764
Q ss_pred -ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCccccccC------CchhcCCccccccHHHHHH
Q 012481 382 -NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPAR------DMFKCGDVDPLKHVPSEFA 450 (462)
Q Consensus 382 -~~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~---~~~~~~G~d~~~------dm~~~gI~dP~~v~~~al~ 450 (462)
++++++++++|++||+.||++||+|||+|+.++ .+|+. .++.++|||+.+ ||++.|||||+.||+++|+
T Consensus 374 ~~~~~~~~~~~~a~al~~ip~~L~~NaG~d~~~~~~~l~~~h~~~~~~~Gid~~~g~~~~~d~~~~gI~dp~~vk~~~l~ 453 (472)
T cd03341 374 TPGLEQYAIKKFAEAFEVVPRTLAENAGLDATEVLSELYAAHQKGNKSAGVDIESGDEGTKDAKEAGIFDHLATKKWAIK 453 (472)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCCeeeeeccCCCCCccChhhccceecHHHHHHHHH
Confidence 789999999999999999999999999999999 99865 345678998853 9999999999999999999
Q ss_pred HHHHHHHHHhcC
Q 012481 451 KATSMISLKNAI 462 (462)
Q Consensus 451 ~A~~~A~~lL~i 462 (462)
.|+++|++||+|
T Consensus 454 ~A~e~a~~iL~i 465 (472)
T cd03341 454 LATEAAVTVLRV 465 (472)
T ss_pred HHHHHHHHHhhh
Confidence 999999999987
No 33
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1.3e-71 Score=588.28 Aligned_cols=380 Identities=27% Similarity=0.353 Sum_probs=343.8
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012481 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (462)
Q Consensus 5 ~~~~lk~~~~~~p~~~~~~~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~i~~G~~~a~~~~~~~ 83 (462)
..+|||+|++.||+++++ +++|++||+++||||||+++|+++|++++.++++ |+||+.|++||+.|.+.++++
T Consensus 50 G~tIlk~i~~~hp~a~ll------~~~~~~~~~~~GDGTtt~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~ 123 (464)
T cd00309 50 GATILKEIEVEHPAAKLL------VEVAKSQDDEVGDGTTTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEI 123 (464)
T ss_pred HHHHHHhccCcCHHHHHH------HHHHHHHHhHhCCchhHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Confidence 578999999999999966 8899999999999999999999999999999999 999999999999999999999
Q ss_pred Hhccccc--cCCHHHHHHHHHHhcC------CChhHHHHHHHHHHhhcc------CcceeEe--cCCCccceeEEEeeEE
Q 012481 84 LDCQARK--ITTFEEIAQVGTTAAN------GDGEIGELIAKVFEKGWE------NDLITIF--DRKALYNELNFVKGMK 147 (462)
Q Consensus 84 L~~~~~~--v~~~~~l~~vA~ts~~------~~~~l~~li~~a~~~vg~------~~~I~v~--~g~~~~d~~~~~~G~~ 147 (462)
|++++.+ ..+.+.+.++|+|+++ +++.+++++++|+.++++ .+.|+|+ .|++. .++++++|++
T Consensus 124 L~~~~~~~~~~~~~~l~~ia~tsl~sK~~~~~~~~l~~l~~~Ai~~v~~~~~~~~~~~I~i~k~~gg~~-~ds~li~Gi~ 202 (464)
T cd00309 124 LKEIAVPIDVEDREELLKVATTSLNSKLVSGGDDFLGELVVDAVLKVGKENGDVDLGVIRVEKKKGGSL-EDSELVVGMV 202 (464)
T ss_pred HHHhcCccCCCCHHHHHHHhHhcccccccccchHHHHHHHHHHHHHhccccCccccceEEEEecCCCCc-ccceeeeeEE
Confidence 9999998 5578899999999998 578899999999999987 5677776 45444 4678999999
Q ss_pred EeccccCCccccccccceeeecCceEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCcchhhHhhHHhhccCCCCcEE
Q 012481 148 LEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVC 227 (462)
Q Consensus 148 ~~~g~~~~~~~~~~~~~~~~l~~~~Il~~d~~i~~~~~i~~~le~i~~~g~~lvii~~~i~~~al~~l~~n~~~~~~~i~ 227 (462)
|+++|.+|+|+ ..++||+|++++.+++. |++++++|++.++++|..+ +|+
T Consensus 203 ~~~~~~~~~m~-------~~~~n~~Ili~~~~Le~-----------------lIi~~~~I~~~al~~L~~~------~I~ 252 (464)
T cd00309 203 FDKGYLSPYMP-------KRLENAKILLLDCKLEY-----------------VVIAEKGIDDEALHYLAKL------GIM 252 (464)
T ss_pred EecCCCCCCCc-------eeecCceEEEEecCcce-----------------EEecCCCcCHHHHHHHHHC------CeE
Confidence 99999999883 37999999999999886 6676778999999998873 599
Q ss_pred EEeecCcchhhhhhHHHHHHHhCCEEecCCCCCCccCCCCCCceeeeEEEEe---cceEEEEcCCCChhhHHHHHHHHHH
Q 012481 228 IIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIAT---MDNVVIIGGSGELVDIQERCEQLRS 304 (462)
Q Consensus 228 avk~~~~g~~r~~~ledla~~tG~~i~~~~~~~~~~~~~~~~LG~a~~v~i~---~~~~~~~~g~~~~~~i~~r~~~l~~ 304 (462)
+|++. ++++|+|||++|||+++++ ++++++++||+|+.|++. +++++++.+++.+
T Consensus 253 ~v~~~-----~~~~L~~Ia~~tGa~ii~~-----~~~~~~~~lG~~~~v~~~~~g~~~~~~~~~~~~~------------ 310 (464)
T cd00309 253 AVRRV-----RKEDLERIAKATGATIVSR-----LEDLTPEDLGTAGLVEETKIGDEKYTFIEGCKGG------------ 310 (464)
T ss_pred EEEeC-----CHHHHHHHHHHhCCEEecc-----cccCCcccCccccEEEEEEEcCeeEEEEEecCCC------------
Confidence 99997 5777999999999999986 888999999999999764 4567888876543
Q ss_pred HhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHc-CCcCChhHHHHHHHHHHHHhcCC-C
Q 012481 305 TIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE-GIVPGSGVALLYASKELDKLQTT-N 382 (462)
Q Consensus 305 ~l~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~a~~~-gvVpGGGa~el~~s~~L~~~~~~-~ 382 (462)
+.|||+|||+|+.+++|++|+++||++++++++++ ++|||||++|+++++.|++++.. +
T Consensus 311 -------------------~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~~~~~~~vpGGGa~E~~ls~~L~~~~~~~~ 371 (464)
T cd00309 311 -------------------KVATILLRGATEVELDEAERSLHDALCAVRAAVEDGGIVPGGGAAEIELSKALEELAKTLP 371 (464)
T ss_pred -------------------CEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCcHHHHHHHHHHHHHhcccc
Confidence 56999999999999999999999999999999999 59999999999999999999875 8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCccccccC----CchhcCCccccccHHHHHHHHHH
Q 012481 383 SDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPAR----DMFKCGDVDPLKHVPSEFAKATS 454 (462)
Q Consensus 383 ~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~~---~~~~~G~d~~~----dm~~~gI~dP~~v~~~al~~A~~ 454 (462)
+++++++++|++||+.||++|++|||+|+.++ .+|++. +..++|+|..+ ||++.|||||+.||+++|+.|++
T Consensus 372 ~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~~~~l~~~~~~~~~~~g~d~~~~~~~d~~~~gI~dp~~vk~~~l~~A~e 451 (464)
T cd00309 372 GKEQLGIEAFADALEVIPRTLAENAGLDPIEVVTKLRAKHAEGGGNAGGDVETGEIVDMKEAGIIDPLKVKRQALKSATE 451 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhccCCCeeEECCCCcEeehhhccCeecHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 999763 23467998877 99999999999999999999999
Q ss_pred HHHHHhcC
Q 012481 455 MISLKNAI 462 (462)
Q Consensus 455 ~A~~lL~i 462 (462)
+|++||+|
T Consensus 452 ~a~~iL~i 459 (464)
T cd00309 452 AASLILTI 459 (464)
T ss_pred HHHHHHhH
Confidence 99999986
No 34
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-73 Score=553.27 Aligned_cols=399 Identities=16% Similarity=0.167 Sum_probs=357.0
Q ss_pred HHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHHH
Q 012481 6 CSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNL 84 (462)
Q Consensus 6 ~~~lk~~~~~~p~~~~~~~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~i~~G~~~a~~~~~~~L 84 (462)
-||||.+++.||++|.+ +++|++||.||||||||||+||+++|+++..+++ |+||..|+++|++|...+++.|
T Consensus 63 ATIlKlldivhPaaktl------Vdia~sQDaEVGDGTTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki 136 (543)
T KOG0361|consen 63 ATILKLLDIVHPAAKTL------VDIARSQDAEVGDGTTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKI 136 (543)
T ss_pred HHHHHHHhhcChhHHHH------HHHHhhccccccCCceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999966 6789999999999999999999999999999999 9999999999999999999999
Q ss_pred hccccccC--C----HHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccC---cceeE--ecCCCccceeEEEeeEE
Q 012481 85 DCQARKIT--T----FEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN---DLITI--FDRKALYNELNFVKGMK 147 (462)
Q Consensus 85 ~~~~~~v~--~----~~~l~~vA~ts~~~------~~~l~~li~~a~~~vg~~---~~I~v--~~g~~~~d~~~~~~G~~ 147 (462)
+++++.++ + ++.|+++|.|++++ .++|+++++||+..++.+ ..|-| .+|++++ ++.+++|+.
T Consensus 137 ~elav~i~~~~~~~~r~lL~KcA~T~lsSKlI~~ek~fF~~MvVDAV~~ld~~l~~~mIGIKKV~GG~~~-dS~lv~GVA 215 (543)
T KOG0361|consen 137 KELAVEIDGSSKTELRELLEKCAATALSSKLIRQEKEFFAKMVVDAVLTLDNDLDLNMIGIKKVPGGAME-DSLLVNGVA 215 (543)
T ss_pred HHheeEecccchhhHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHhhccccchhhcceeecCCCccc-hhhhcccee
Confidence 99998876 2 46789999887753 678999999999998743 23444 4788887 478999999
Q ss_pred EeccccCCccccccccceeeecCceEEEeccc-------------cCCHHH-----------HHHHHHHHHHcCCCEEEE
Q 012481 148 LEWGLKSPYFFTHKNKKECVLDGALVLIYDTK-------------ISNSNV-----------IRQASLPCMMQGQSLLVV 203 (462)
Q Consensus 148 ~~~g~~~~~~~~~~~~~~~~l~~~~Il~~d~~-------------i~~~~~-----------i~~~le~i~~~g~~lvii 203 (462)
|.+.|.+..|...|+ .+.||+|+++|.. ++++++ +...|++|..+|+++|+.
T Consensus 216 FkKtFsYAGfEqqPK----k~~NpkIl~LnvELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLS 291 (543)
T KOG0361|consen 216 FKKTFSYAGFEQQPK----KFLNPKILLLNVELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLS 291 (543)
T ss_pred eeehccccchhhCcc----ccCCceEEEEeeeeeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEe
Confidence 999999888866555 7999999999864 233333 457789999999999998
Q ss_pred ecCcchhhHhhHHhhccCCCCcEEEEeecCcchhhhhhHHHHHHHhCCEEecCCCCCCccCCCCCCceeeeEEE---Eec
Q 012481 204 AEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---ATM 280 (462)
Q Consensus 204 ~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tG~~i~~~~~~~~~~~~~~~~LG~a~~v~---i~~ 280 (462)
.-.|.|.+.++|+...+ .||-|.| +++|.|+..+|||++.++ .+++.++.||.|..++ ++.
T Consensus 292 kLpIGD~ATQyFAdrdi-----FCAGRV~------~eDl~Rv~~acGGsi~tt-----~~~i~~~~LG~C~~FeE~QvG~ 355 (543)
T KOG0361|consen 292 KLPIGDLATQYFADRDI-----FCAGRVP------EEDLNRVMQACGGSIQTT-----VSDIKEEVLGTCALFEERQVGG 355 (543)
T ss_pred cccchHHHHHHhhccCc-----eecCcCC------HHHHHHHHHhcCcchhhh-----hhhcchhhcchhhhHHHHhhcc
Confidence 88999999999996542 4566655 677999999999999996 7999999999999986 689
Q ss_pred ceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcC-
Q 012481 281 DNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG- 359 (462)
Q Consensus 281 ~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~a~~~g- 359 (462)
++|.+|+||+.. ++||+++||+-++.++|.+|++|||++.+|.|++..
T Consensus 356 eRyN~Fegcp~a-------------------------------ktcTliLRGgaeqfieE~eRSlHDAImIVrralkn~~ 404 (543)
T KOG0361|consen 356 ERYNLFEGCPKA-------------------------------KTCTLILRGGAEQFIEETERSLHDAIMIVRRALKNDS 404 (543)
T ss_pred hhhhhhcCCCcc-------------------------------ceeEEEEeccHHHHHHHHhhhhhhHHHHHHHHhccCc
Confidence 999999999865 469999999999999999999999999999999985
Q ss_pred CcCChhHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCccccccC---
Q 012481 360 IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPAR--- 431 (462)
Q Consensus 360 vVpGGGa~el~~s~~L~~~~~~-~~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~---~~~~~~G~d~~~--- 431 (462)
+|+|||+.||++|++|++|+.. .+++|+-+.+|++|||.||++||+|||+|..++ ++|+. +|+.|+|+|+.+
T Consensus 405 vVaGGGaiEMElSk~lRd~S~ti~gK~q~~i~A~akalEvIPrqLc~NaGfDa~~ilnkLR~rHA~G~~w~Gvdi~~e~i 484 (543)
T KOG0361|consen 405 VVAGGGAIEMELSKYLRDYSRTIAGKQQLFINAYAKALEVIPRQLCDNAGFDATNILNKLRQRHAQGEKWYGVDINTEGI 484 (543)
T ss_pred EeeCCceeeehHHHHHHHhhcccCcHHHHHHHHHHHHHHHhHHHHhhhcCCcHHHHHHHHHHHhhcCCceeeeeecccch
Confidence 9999999999999999999997 999999999999999999999999999999999 99986 578999999987
Q ss_pred -CchhcCCccccccHHHHHHHHHHHHHHHhcC
Q 012481 432 -DMFKCGDVDPLKHVPSEFAKATSMISLKNAI 462 (462)
Q Consensus 432 -dm~~~gI~dP~~v~~~al~~A~~~A~~lL~i 462 (462)
|+++.+||||..||.+++..|+|+|++||.|
T Consensus 485 ~dn~~~~VwEP~~VK~Nai~aateAa~lIlsv 516 (543)
T KOG0361|consen 485 ADNFEKFVWEPSIVKINAITAATEAACLILSV 516 (543)
T ss_pred hhHHHhhccChHHHHHHHHHHHHHhhhheEeh
Confidence 9999999999999999999999999999875
No 35
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=4.6e-67 Score=555.95 Aligned_cols=396 Identities=20% Similarity=0.311 Sum_probs=354.4
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012481 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (462)
Q Consensus 5 ~~~~lk~~~~~~p~~~~~~~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~i~~G~~~a~~~~~~~ 83 (462)
+.+|+|++++.||+++++ ++++++||+++||||||+++|+++||+++.++++ |+||..|++||+.+.+.+++.
T Consensus 31 g~tIl~~l~~~~P~~~ll------~~~~~~~~~~~GDGtts~vlL~~~ll~~~~~li~~gi~p~~I~~~~~~~~~~~~~~ 104 (485)
T PF00118_consen 31 GATILKSLKINHPIAKLL------VEASKSQDEEVGDGTTSVVLLACELLRNALKLIKKGIHPQEIIRGLQEALKIILEY 104 (485)
T ss_dssp HHHHHHHSTBSSHHHHHH------HHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHhhhccchhhhH------HHhHHHHHhhhccccceeeecccchhhhhhhhhhccccccchhhhhhhhhhhhhhh
Confidence 578999999999999966 7899999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCH-HHHHHHHHHhcCCC------hhHHHHHHHHHHhhc------cCcceeEecCCCccceeEEEeeEEEec
Q 012481 84 LDCQARKITTF-EEIAQVGTTAANGD------GEIGELIAKVFEKGW------ENDLITIFDRKALYNELNFVKGMKLEW 150 (462)
Q Consensus 84 L~~~~~~v~~~-~~l~~vA~ts~~~~------~~l~~li~~a~~~vg------~~~~I~v~~g~~~~d~~~~~~G~~~~~ 150 (462)
|+++++++++. +.++++|+++++++ +.+++++++|+..+. ..+.+.+ .|++. +++++++|++|++
T Consensus 105 l~~~s~~~~~~~~~l~~i~~t~l~~k~~~~~~~~l~~li~~a~~~~~~~~~~~~i~i~~i-~g~~~-~dS~li~Giv~~~ 182 (485)
T PF00118_consen 105 LEKISIPINNDDESLLNIAKTSLNSKISSSWSDHLSKLIVDAIKSIKSNFDLDNIKIIKI-PGGSI-SDSELINGIVLDK 182 (485)
T ss_dssp HHHHSEESTSTSHHHHHHHHHHHTTSCGGGCHHHHHHHHHHHHHHHTTTHHGGGEEEEEE-ESSSS-GGEEEESEEEESS
T ss_pred hhhhhccccccchhhhhhhcccccccccccchhhhhhhHHHHHHhhcccccccchhhhhh-ccccc-cccccccceeeec
Confidence 99999998866 89999999999876 789999999994332 2222333 45555 5789999999999
Q ss_pred cccCCccccccccceeeecCceEEEeccccCCHHH-----------------------HHHHHHHHHHcCCCEEEEecCc
Q 012481 151 GLKSPYFFTHKNKKECVLDGALVLIYDTKISNSNV-----------------------IRQASLPCMMQGQSLLVVAEDV 207 (462)
Q Consensus 151 g~~~~~~~~~~~~~~~~l~~~~Il~~d~~i~~~~~-----------------------i~~~le~i~~~g~~lvii~~~i 207 (462)
+|.++.|+ ..+++|+|++++.+++.... +.++++++.+.|.+|++++++|
T Consensus 183 ~~~~~~~~-------~~~~~~~Ill~~~~L~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i 255 (485)
T PF00118_consen 183 GFSSPNMP-------KKIENPKILLLNCPLEYSKSFKSEIRITSPEQLDELSKQEKKYLKKILEKIINLGVNLIISQKSI 255 (485)
T ss_dssp SBSSTTSB-------SEEESEEEEEESSEBSSCCHSTEEEEESSTHHHHHHHHHHHHHHHHHHHHHHTTTSSEEEESSEB
T ss_pred cccccccc-------cccccceEEeeecccccccccccccchhhHHHHHHHHhhhhhhhccccceEeeeccceeeeeccc
Confidence 99998543 36799999999998877666 8899999999999999999999
Q ss_pred chhhHhhHHhhccCCCCcEEEEeecCcchhhhhhHHHHHHHhCCEEecCCCCCCccCCCCCCceeeeEE---EEecceEE
Q 012481 208 ENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRV---IATMDNVV 284 (462)
Q Consensus 208 ~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tG~~i~~~~~~~~~~~~~~~~LG~a~~v---~i~~~~~~ 284 (462)
++.++++|..|+ +.++++. ++++|++||.+|||+++++ +++++++++|+|+.+ ++++++++
T Consensus 256 ~~~~l~~l~~~~------I~~i~~v-----~~~~l~~i~~~tg~~ii~~-----~~~l~~~~lG~~~~v~~~~i~~~~~~ 319 (485)
T PF00118_consen 256 DDEALQYLNKNG------ILVIRRV-----SKEDLERIARATGASIISS-----LDDLSDEDLGFCKSVEEREIGNKKYI 319 (485)
T ss_dssp THHHHHHHHHCT------HEEESSE-----HHHHHHHHHHHHTSBEBSS-----CGGSTGGGSEEEEEEEEEEETSSEEE
T ss_pred ccccchhhhhhh------hhccccc-----hHHHHHhhhcccCCcEecc-----cccccchhhhhhhhhhhccccccccc
Confidence 999999998865 6788877 5667999999999999997 788998889999999 67888999
Q ss_pred EEcC--CCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcC-Cc
Q 012481 285 IIGG--SGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IV 361 (462)
Q Consensus 285 ~~~g--~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~a~~~g-vV 361 (462)
++++ +. +++.+||+|||+|+.+++|++++++||+++++++++++ +|
T Consensus 320 ~~~~~~~~-------------------------------~~~~~Till~g~t~~~l~e~~~~i~dal~~~~~~~~~~~vv 368 (485)
T PF00118_consen 320 FIEGIGCL-------------------------------SSKICTILLRGPTEFELEERERSIHDALKVLRSALKDGGVV 368 (485)
T ss_dssp EEEEHSES-------------------------------SSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHHHSSEEE
T ss_pred cccccccc-------------------------------ccCceEEEeccccchhHHHHHHHHHHHHHHHHHhccCCcee
Confidence 9884 33 24689999999999999999999999999999999975 99
Q ss_pred CChhHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh--cCCCCccccccC----Cc
Q 012481 362 PGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE--QDSSDLGYNPAR----DM 433 (462)
Q Consensus 362 pGGGa~el~~s~~L~~~~~~-~~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~--~~~~~~G~d~~~----dm 433 (462)
||||++|++|+.+|++++.. ++++++++++|++||+.||++|++|||+|+.++ ++|.. ..++++|||+.+ ||
T Consensus 369 pGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~~~~~~~~~l~~~h~~~~~~g~d~~~~~i~~~ 448 (485)
T PF00118_consen 369 PGGGATELHLSKALRKYAKSLSGKEQLAIEAFADALESIPKTLAQNAGLDSSEVISKLKSFHNNGNNYGIDLDTGEIVDM 448 (485)
T ss_dssp ETTTHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHTTHHHHHHHHHTTSTHHHHHHHHHHHHHSTTTEEEETTTTEEEET
T ss_pred ecCcchhhhhhhhHHHhhhcccCchhhhHHHHHHHHHHhhhhhhhccCCCceeeehhhHhhhccccccCcCccCCceecc
Confidence 99999999999999888875 889999999999999999999999999999999 99977 345699999987 99
Q ss_pred hhcCCccccccHHHHHHHHHHHHHHHhcC
Q 012481 434 FKCGDVDPLKHVPSEFAKATSMISLKNAI 462 (462)
Q Consensus 434 ~~~gI~dP~~v~~~al~~A~~~A~~lL~i 462 (462)
++.|||||+.+|+++++.|+++|+++|+|
T Consensus 449 ~~~gi~dp~~~k~~~l~~A~~~a~~iL~i 477 (485)
T PF00118_consen 449 KEAGILDPLLVKISALKSAVEIASLILRI 477 (485)
T ss_dssp TTTTCEEEHHHHHHHHHHHHHHHHHHHTE
T ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999986
No 36
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.7e-66 Score=503.49 Aligned_cols=409 Identities=19% Similarity=0.215 Sum_probs=349.0
Q ss_pred HHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHHH
Q 012481 6 CSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNL 84 (462)
Q Consensus 6 ~~~lk~~~~~~p~~~~~~~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~i~~G~~~a~~~~~~~L 84 (462)
-+|||.|.+.||+++|| +++|++||.++||||||+|+|||+||+.+.+|++ |+||+.|...|+.|.+.++++|
T Consensus 69 aTILk~m~vlhP~akmL------velS~aQD~eaGDGTTsVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il 142 (534)
T KOG0358|consen 69 ATILKQMNVLHPAAKML------VELSAAQDSEAGDGTTSVVILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDIL 142 (534)
T ss_pred HHHHHHHhhhChHHHHH------HHhhhhccccccCCceEEEEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHH
Confidence 58999999999999988 5689999999999999999999999999999999 9999999999999999999999
Q ss_pred hccccccC--CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhcc-C-------cceeE--ecCCCccceeEEEeeE
Q 012481 85 DCQARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWE-N-------DLITI--FDRKALYNELNFVKGM 146 (462)
Q Consensus 85 ~~~~~~v~--~~~~l~~vA~ts~~~------~~~l~~li~~a~~~vg~-~-------~~I~v--~~g~~~~d~~~~~~G~ 146 (462)
.+++.|++ |++.|.+-|+||.|+ +..++.+.++|+.++-. + ..|++ +.|++. |++++++|+
T Consensus 143 ~~m~~~velsdre~Li~~atTsLnSKvvSq~s~llapmAVdAV~kv~dp~~~~nvdlkdIkivkklGgtv-dDte~i~gl 221 (534)
T KOG0358|consen 143 DEMSVPVELSDRESLIKSATTSLNSKVVSQYSSLLAPMAVDAVLKVIDPENATNVDLKDIKIVKKLGGTV-DDTELIKGL 221 (534)
T ss_pred HhcCCCcccCcHHHHHHHHHhHhhHHHHHhhccccchHHHHHHHhccCcccccccchhhhhhHHhhCCcc-chhhhhcce
Confidence 99999986 788899999998874 55788999999998742 1 12444 356655 679999999
Q ss_pred EEeccccCCcccccccccee-----eecCceEEEecc-ccCCH-----------HHHHHHHHHHHHcCCCEEEEecCcch
Q 012481 147 KLEWGLKSPYFFTHKNKKEC-----VLDGALVLIYDT-KISNS-----------NVIRQASLPCMMQGQSLLVVAEDVEN 209 (462)
Q Consensus 147 ~~~~g~~~~~~~~~~~~~~~-----~l~~~~Il~~d~-~i~~~-----------~~i~~~le~i~~~g~~lvii~~~i~~ 209 (462)
+|++......-+++.++.++ .++.|+--.-++ -++++ +++++++++|+++|++++++|++|-.
T Consensus 222 vl~~~~~~~~gptriekAkIglIQF~iS~PKtdmen~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILR 301 (534)
T KOG0358|consen 222 VLTQKASKSAGPTRIEKAKIGLIQFQISPPKTDMENQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILR 301 (534)
T ss_pred EEeeecccCCCcchhhhceeeEEEEEecCCCCCcccceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHH
Confidence 99987653323333332222 234443111010 13333 24678889999999999999999999
Q ss_pred hhHhhHHhhccCCCCcEEEEeecCcchhhhhhHHHHHHHhCCEEecCCCCCCccCCCCCCceeeeEEEEe----cceEEE
Q 012481 210 EVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIAT----MDNVVI 285 (462)
Q Consensus 210 ~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tG~~i~~~~~~~~~~~~~~~~LG~a~~v~i~----~~~~~~ 285 (462)
++++.|+.|.+.. ++||+||... | +++|.+|+.+|++++.+ ++.++++.||+++.++.. +.+++-
T Consensus 302 davsDLAlHfL~k-lkimvikdie----R-ediefick~l~c~Pia~-----id~f~~d~Lg~adlveE~~~~G~gkivk 370 (534)
T KOG0358|consen 302 DAVSDLALHFLAK-LKIMVIKDIE----R-EDIEFICKTLGCKPIAD-----IDHFTADKLGSADLVEETDSSGEGKIVK 370 (534)
T ss_pred HHHHHHHHHHHHh-CcEEEEcccc----H-hhHHHHHhhcCCeecch-----hhhcChhhcCcchhhhhcccCCCccEEE
Confidence 9999888877655 8999999883 4 45999999999999997 899999999999998643 446788
Q ss_pred EcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcC-CcCCh
Q 012481 286 IGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGS 364 (462)
Q Consensus 286 ~~g~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~a~~~g-vVpGG 364 (462)
+.|+.++ |.+++|++||++...++|.+|++|||||++|+.++.. .+|||
T Consensus 371 ~tg~~n~------------------------------g~tvsil~RGsn~lvleEaeRSlhDALCVirCLvk~r~li~GG 420 (534)
T KOG0358|consen 371 ITGIQNA------------------------------GRTVSILLRGSNKLVLEEAERSLHDALCVIRCLVKKRALIAGG 420 (534)
T ss_pred EEEeecC------------------------------CCceEEEEecCchhhhHHHhhhhhhhhHHHHhhhhccceecCC
Confidence 8887664 5789999999999999999999999999999999875 99999
Q ss_pred hHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCccccccC----Cchh
Q 012481 365 GVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPAR----DMFK 435 (462)
Q Consensus 365 Ga~el~~s~~L~~~~~~-~~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~---~~~~~~G~d~~~----dm~~ 435 (462)
|+.|++++..|..++.. .|.+.|++++|++|||.+|.+||+|||++|..+ ..|++ +|+.++|+|+++ ||++
T Consensus 421 GapEieia~~L~~~a~t~eG~~~yc~rafA~AlEvIP~tLAeNAGLnpI~~VtELRn~haqge~~aGInVRkg~~tni~e 500 (534)
T KOG0358|consen 421 GAPEIEIALRLSALARTLEGVEAYCWRAFADALEVIPYTLAENAGLNPIATVTELRNRHAQGEKNAGINVRKGGITNILE 500 (534)
T ss_pred CCcchHHHHHHHHHHhhhccchhHHHHHHHHHHhcccHhHHhhCCCChhhHHHHHHHHHhcCCcccceeeecccchhhHH
Confidence 99999999999999886 899999999999999999999999999999999 98986 567899999998 9999
Q ss_pred cCCccccccHHHHHHHHHHHHHHHhcC
Q 012481 436 CGDVDPLKHVPSEFAKATSMISLKNAI 462 (462)
Q Consensus 436 ~gI~dP~~v~~~al~~A~~~A~~lL~i 462 (462)
..|+.|+.|-.++++.|+|.+.+||+|
T Consensus 501 e~VvQPllVs~SaitlA~Etvr~ILKI 527 (534)
T KOG0358|consen 501 ENVVQPLLVSISAITLATETVRSILKI 527 (534)
T ss_pred HhcccceeeeHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999987
No 37
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-64 Score=487.79 Aligned_cols=395 Identities=18% Similarity=0.248 Sum_probs=345.6
Q ss_pred HHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHHH
Q 012481 6 CSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNL 84 (462)
Q Consensus 6 ~~~lk~~~~~~p~~~~~~~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~i~~G~~~a~~~~~~~L 84 (462)
-+|||+|-+.||+||+| +++|+.||+|+|||||||+|||++||++|.+++. .+||+.|+.||++|...|++.|
T Consensus 63 AtILksi~vDnpaAkvL------v~~S~vQD~EvGDGTTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL 136 (527)
T KOG0363|consen 63 ATILKSIGVDNPAAKVL------VDISKVQDDEVGDGTTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEAL 136 (527)
T ss_pred HHHHHhcCCCCchhhhe------eccccccccccCCCceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHH
Confidence 48999999999999977 6789999999999999999999999999999999 9999999999999999999999
Q ss_pred hccccccCC-----HHHHHHHHHHhcC------CChhHHHHHHHHHHhhccCc---ceeE--ecCCCccceeEEEeeEEE
Q 012481 85 DCQARKITT-----FEEIAQVGTTAAN------GDGEIGELIAKVFEKGWEND---LITI--FDRKALYNELNFVKGMKL 148 (462)
Q Consensus 85 ~~~~~~v~~-----~~~l~~vA~ts~~------~~~~l~~li~~a~~~vg~~~---~I~v--~~g~~~~d~~~~~~G~~~ 148 (462)
.+.++...+ +++|.++|+|+.. ..+.|+++.++|+.++...+ .|+| +.|+++. ++.+-+|+.+
T Consensus 137 ~~~s~dns~~~~kfr~DLl~iarTTL~SKiLsq~kehFaelavdAV~rLkGs~nL~~IqIIK~~Gg~l~-dSfLDeGFlL 215 (527)
T KOG0363|consen 137 TKSSIDNSSDKEKFREDLLKIARTTLSSKILSQDKEHFAELAVDAVLRLKGSTNLEAIQIIKKLGGKLE-DSFLDEGFLL 215 (527)
T ss_pred HHhhhhccCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCCCccceeeehhcCCccc-ccccccccee
Confidence 998877542 5789999988764 25689999999999985433 2444 3677776 4668888888
Q ss_pred eccccCCccccccccceeeecCceEEEecccc--------------CCH-----------HHHHHHHHHHHHcCCCEEEE
Q 012481 149 EWGLKSPYFFTHKNKKECVLDGALVLIYDTKI--------------SNS-----------NVIRQASLPCMMQGQSLLVV 203 (462)
Q Consensus 149 ~~g~~~~~~~~~~~~~~~~l~~~~Il~~d~~i--------------~~~-----------~~i~~~le~i~~~g~~lvii 203 (462)
++.+-- .+| ..++||+||+-|.+. ++. ..++..+++|.+.|.+++|-
T Consensus 216 ~K~igv----~qp----kriena~iLIANT~mDtDKvKvfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiN 287 (527)
T KOG0363|consen 216 DKKIGV----NQP----KRIENAKILIANTPMDTDKVKVFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFIN 287 (527)
T ss_pred ccccCC----CCc----ccccccceEEecCCCcccceeeecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEee
Confidence 775421 112 368899999887642 221 24678889999999999999
Q ss_pred ecCcchhhHhhHHhhccCCCCcEEEEeecCcchhhhhhHHHHHHHhCCEEecCCCCCCccCCCCCCceeeeEEE---Eec
Q 012481 204 AEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---ATM 280 (462)
Q Consensus 204 ~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tG~~i~~~~~~~~~~~~~~~~LG~a~~v~---i~~ 280 (462)
.+-|-+...++|.. .+|++++.++|.. +|||+..|||.+++. |++++...||+|+.++ +++
T Consensus 288 RQLiYnyPeqLf~d------agi~aIEHADFdG-----iERLalvtGGeI~ST-----Fd~p~~~klG~C~~IeeimiGe 351 (527)
T KOG0363|consen 288 RQLIYNYPEQLFAD------AGIMAIEHADFDG-----IERLALVTGGEIVST-----FDNPELVKLGECDLIEEIMIGE 351 (527)
T ss_pred hhHhhcCHHHHHhh------cCcceeecccchh-----HHHHhhcccceeeec-----cCCcchhccccchhhHHHhcCc
Confidence 99999999988775 3589999998763 899999999999997 9999999999999875 789
Q ss_pred ceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcC-
Q 012481 281 DNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG- 359 (462)
Q Consensus 281 ~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~a~~~g- 359 (462)
+++.-|.|++- |..|||++||+|++.+||.+|++|||||+.....++.
T Consensus 352 d~li~FSGv~~-------------------------------GeActIVlrGat~q~LDEaeRslHDALcVLaqtv~esr 400 (527)
T KOG0363|consen 352 DKLIKFSGVKL-------------------------------GEACTIVLRGATQQILDEAERSLHDALCVLAQTVKESR 400 (527)
T ss_pred cceeeeccccc-------------------------------ccceEEEEecccHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 99999999864 3459999999999999999999999999999999886
Q ss_pred CcCChhHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc---CCCCccccccC---
Q 012481 360 IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ---DSSDLGYNPAR--- 431 (462)
Q Consensus 360 vVpGGGa~el~~s~~L~~~~~~-~~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~~---~~~~~G~d~~~--- 431 (462)
+|.|||++||-+++.+.+++.. +|++..++++|++||..+|.+||.|||||+.++ ++|++. |..++|+|+++
T Consensus 401 vv~GgG~sEm~Ma~av~~~A~~~pGkea~AieAfarAL~qlPtiiaDNaG~dsaelva~Lra~h~~g~~t~Gld~~~G~i 480 (527)
T KOG0363|consen 401 VVLGGGCSEMLMAKAVDKEAQETPGKEALAIEAFARALRQLPTIIADNAGYDSAELVAQLRAEHYNGRTTMGLDVRNGEI 480 (527)
T ss_pred eeecCCcHHHHHHHHHHHHHhhCCchhhHHHHHHHHHHHhcchhhhccCCCCHHHHHHHHHHHhhcCCcccccccccCch
Confidence 9999999999999999999886 999999999999999999999999999999999 999873 56889999998
Q ss_pred -CchhcCCccccccHHHHHHHHHHHHHHHhcC
Q 012481 432 -DMFKCGDVDPLKHVPSEFAKATSMISLKNAI 462 (462)
Q Consensus 432 -dm~~~gI~dP~~v~~~al~~A~~~A~~lL~i 462 (462)
||.+.||+|++++|+..+.+|.|+|.+|||+
T Consensus 481 ~dm~~~Gi~es~~vK~~vv~sasEaae~ilrv 512 (527)
T KOG0363|consen 481 GDMRELGIVESLKVKQAVVSSASEAAEMILRV 512 (527)
T ss_pred hhHHHhhhHHHHHHHHHHHhhhHHHHHHHHhh
Confidence 9999999999999999999999999999984
No 38
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-60 Score=468.94 Aligned_cols=396 Identities=17% Similarity=0.220 Sum_probs=336.5
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012481 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (462)
Q Consensus 5 ~~~~lk~~~~~~p~~~~~~~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~i~~G~~~a~~~~~~~ 83 (462)
+++||++||++||++.++ -..|.+||+..||||||+|+|.++|+++|..++. |+||..|+.||+.|.+.++++
T Consensus 59 gnvLl~emQiqhPTa~lI------akaatAqdd~tGDGttS~VlligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~ 132 (520)
T KOG0359|consen 59 GNVLLKEMQIQHPTASLI------AKVATAQDDITGDGTTSVVLLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEF 132 (520)
T ss_pred chhhHHHHhhcCchHHHH------HHHHHHhhcccCCCcceEEEeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhh
Confidence 579999999999999866 3478999999999999999999999999999999 999999999999999999999
Q ss_pred HhccccccCCHHHHHHHHHHhcCC--C----hhHHHHHHHHHHhhc-cCcce---eEe---cCCCccceeEEEeeEEEec
Q 012481 84 LDCQARKITTFEEIAQVGTTAANG--D----GEIGELIAKVFEKGW-ENDLI---TIF---DRKALYNELNFVKGMKLEW 150 (462)
Q Consensus 84 L~~~~~~v~~~~~l~~vA~ts~~~--~----~~l~~li~~a~~~vg-~~~~I---~v~---~g~~~~d~~~~~~G~~~~~ 150 (462)
|+..+.++ +++.|..||++|.+. + +.+.+++++++..+. .++.| .++ ..+....++.+++|+++||
T Consensus 133 L~k~~~~~-~~~~L~~va~tsl~Tkv~~~la~~lt~~vv~aVl~i~~~~~~idl~mveim~mq~~s~~dT~~v~glvLdh 211 (520)
T KOG0359|consen 133 LEKVSREV-DRETLKDVARTSLRTKVHAELADVLTPIVVDSVLCIRRQEEPIDLFMVEIMEMQHKSLHDTSLVQGLVLDH 211 (520)
T ss_pred hhccccch-hHHHHHHHHHHhhcCcccHHHHhHhHHHHHhhheeeccCCCCcchhHHHhhhhccCchhhhHHhhhhhccC
Confidence 99777776 578999999999875 2 346677788877765 23322 222 2223334678999999999
Q ss_pred cccCCccccccccceeeecCceEEEeccccCCH-------------HH-----------HHHHHHHHHHcC---CCEEEE
Q 012481 151 GLKSPYFFTHKNKKECVLDGALVLIYDTKISNS-------------NV-----------IRQASLPCMMQG---QSLLVV 203 (462)
Q Consensus 151 g~~~~~~~~~~~~~~~~l~~~~Il~~d~~i~~~-------------~~-----------i~~~le~i~~~g---~~lvii 203 (462)
|-.||.|++ .++|++||++|.+++.. .| +.+.+++|.+-+ +.+|+|
T Consensus 212 g~rHpdmp~-------~~e~a~iL~~NvSLEYEK~EinsgffYsta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvi 284 (520)
T KOG0359|consen 212 GARHPDMPR-------RVEDAYILICNVSLEYEKPEINSGFFYSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVI 284 (520)
T ss_pred CCCCccccc-------chhceEEEEeeccccccccccccchhccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEe
Confidence 999999864 79999999999865421 11 123344444443 346665
Q ss_pred -ecCcchhhHhhHHhhccCCCCcEEEEeecCcchhhhhhHHHHHHHhCCEEecCCCCCCccCCCCCCceeeeEEE---Ee
Q 012481 204 -AEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVI---AT 279 (462)
Q Consensus 204 -~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tG~~i~~~~~~~~~~~~~~~~LG~a~~v~---i~ 279 (462)
+++|||..|..|+.+ +|+|+|++ .|++ ||||..+|||..+++ ++|++|++||+|+.|. ++
T Consensus 285 nqkGidp~sld~~a~~------gIlaLRRA----KRRN-mERL~lacGG~a~ns-----vddLtp~~LG~aglVye~tlG 348 (520)
T KOG0359|consen 285 NQKGIDPTSLDSLAKS------GILALRRA----KRRN-MERLVLACGGEAVNS-----VDDLTPDYLGYAGLVYEYTLG 348 (520)
T ss_pred cccCCCCCcchhhhhc------chHHHHHH----hhhh-HHHHHHhhccceecc-----cccCChhhccccceeEEeecc
Confidence 679999999999875 38899998 3776 999999999999996 9999999999999995 57
Q ss_pred cceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcC
Q 012481 280 MDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG 359 (462)
Q Consensus 280 ~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~a~~~g 359 (462)
+++|||+++|++|. .|||+++|||.+.+.+.+++++|++++++++++++
T Consensus 349 EEkfTFIE~~~~p~-------------------------------S~TiLikgpnkht~tQikdairdglrav~ntl~d~ 397 (520)
T KOG0359|consen 349 EEKFTFIEKCNNPS-------------------------------SVTILIKGPNKHTITQIKDAIRDGLRAVKNTLEDK 397 (520)
T ss_pred ceeeEeeecCCCCc-------------------------------ceEEEEeCCccchHHHHHHHHhhHHHHHHHHhhhc
Confidence 99999999999995 48999999999999999999999999999999998
Q ss_pred -CcCChhHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhcCC-CCccccccC----
Q 012481 360 -IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQDS-SDLGYNPAR---- 431 (462)
Q Consensus 360 -vVpGGGa~el~~s~~L~~~~~~-~~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~~~~-~~~G~d~~~---- 431 (462)
++||+|+.|.+++.+|+..... +++.++|+++|++||..+|++|++|+|+|+.+. .+|..+.+ ..+|+|+.+
T Consensus 398 ~~i~Gaga~~va~~~~lr~~k~~vkgra~~g~~afa~all~ipk~La~nsg~D~qe~l~~l~~e~~~~~~g~dl~~g~~~ 477 (520)
T KOG0359|consen 398 CGIPGAGAFEVALGRHLRESKKSVKGRAYLGVKAFANALLVIPKTLAKNSGLDEQETLVSLKKEHEVTLRGLDLFRGEEC 477 (520)
T ss_pred ccccCchHHHHHHHHHHHHhhhccCchhhhhHHHHHhhhhhhhHHHHHhcCCchHHHHHHHHHhhhhhhcccccccCCcc
Confidence 9999999999999999977775 899999999999999999999999999999999 88866432 346899887
Q ss_pred CchhcCCccccccHHHHHHHHHHHHHHHhc
Q 012481 432 DMFKCGDVDPLKHVPSEFAKATSMISLKNA 461 (462)
Q Consensus 432 dm~~~gI~dP~~v~~~al~~A~~~A~~lL~ 461 (462)
|....||||.+.|+++.|.+++-+|+.+|-
T Consensus 478 ~~~~~gi~Dny~v~~~~l~s~~via~nlLl 507 (520)
T KOG0359|consen 478 DPSRKGIYDNYSVKKQLLRSEAVIATNLLL 507 (520)
T ss_pred chhhccccchHHHHHHHhhhhHHHHHHHHH
Confidence 778889999999999999999999998873
No 39
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-60 Score=471.84 Aligned_cols=401 Identities=16% Similarity=0.209 Sum_probs=347.3
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012481 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (462)
Q Consensus 5 ~~~~lk~~~~~~p~~~~~~~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~i~~G~~~a~~~~~~~ 83 (462)
..+||+.+.++||++|+| +++++.||+++|||||+++++|++|++.+.+|+. ++||+.+++||+.|...++++
T Consensus 61 gAtiL~~l~V~HPa~KiL------velaq~qd~evgDgttsvviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~ 134 (545)
T KOG0360|consen 61 GATILSLLEVEHPAAKVL------VELAQLQDEEVGDGTTSVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKY 134 (545)
T ss_pred HHHHHHhhhhcchHHHHH------HHHHHhccccccCCceEEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHH
Confidence 358999999999999977 5789999999999999999999999999999999 999999999999999999999
Q ss_pred Hhc-cccccC--CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhcc---Cc-------ceeEe--cCCCccceeEE
Q 012481 84 LDC-QARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWE---ND-------LITIF--DRKALYNELNF 142 (462)
Q Consensus 84 L~~-~~~~v~--~~~~l~~vA~ts~~~------~~~l~~li~~a~~~vg~---~~-------~I~v~--~g~~~~d~~~~ 142 (462)
+.+ .+.|++ ..+-|.++|++++++ .++|++++++|+..+.. +| .++|- .|.+. .++.+
T Consensus 135 i~~~~~~~vd~lg~~~Lin~~ktsmsSK~i~~ds~~f~~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~-~eS~l 213 (545)
T KOG0360|consen 135 ITEGLSKPVDSLGTQILINLAKTSMSSKIIGMDSDFFTEMVVDALLAVKILDINGEPHYPINSVNILKAHGKSQ-IESML 213 (545)
T ss_pred hhccceeehhhcchHHHHHHHHhhhcceecccchHHHHHHHHHHHHHHhhcccCCceeccccceeEEecCCccc-hhhee
Confidence 987 567776 367899999998753 57899999999987632 23 24443 45444 46889
Q ss_pred EeeEEEeccccCCccccccccceeeecCceEEEeccc-------------cCCHHHH-----------HHHHHHHHHcCC
Q 012481 143 VKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDTK-------------ISNSNVI-----------RQASLPCMMQGQ 198 (462)
Q Consensus 143 ~~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Il~~d~~-------------i~~~~~i-----------~~~le~i~~~g~ 198 (462)
+.|+.++....+..|+. .+.|++|+++|.. |.+|+++ ++.++++..+|+
T Consensus 214 ~~GyaLnc~~asq~m~~-------~i~~~Kiacld~~Lqk~km~lGv~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ga 286 (545)
T KOG0360|consen 214 LPGYALNCSVASQMMPL-------RIKNAKIACLDFTLQKTKMKLGVQVVVDDPEKLEQIRQREQDITKERIKKILATGA 286 (545)
T ss_pred ecceeeeccHhhhcccc-------ccccceeeeEecccccccccccceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCC
Confidence 99999999988876643 5679999999964 4455432 344667889999
Q ss_pred CEEEEecCcchhhHhhHHhhccCCCCcEEEEeecCcchhhhhhHHHHHHHhCCEEecCCCCCC-ccCCCCCCceeeeEEE
Q 012481 199 SLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMN-STYFVPLKLGSCKRVI 277 (462)
Q Consensus 199 ~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tG~~i~~~~~~~~-~~~~~~~~LG~a~~v~ 277 (462)
++++++++|||.++.+|+.. +++||||. +|.+|++||++||++++++...+. -+.+++.++|+|++|.
T Consensus 287 nvVLtt~gIddmc~K~~vea------gamAVrR~-----~k~dlk~iakatGat~~sSla~l~geetf~~~~lG~a~evv 355 (545)
T KOG0360|consen 287 NVVLTTGGIDDMCLKYFVEA------GAMAVRRC-----KKEDLKRIAKATGATLLSSLANLEGEETFEPASLGSADEVV 355 (545)
T ss_pred cEEEEcCCccHHHHHHHHHc------chhhhHHH-----HHHHHHHHHHhhCCeeeehhhccccccccChhhccchhHHH
Confidence 99999999999999999863 48999998 688899999999999999743321 2457788999999984
Q ss_pred ---EecceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHH
Q 012481 278 ---ATMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQA 354 (462)
Q Consensus 278 ---i~~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~ 354 (462)
+++|+++++.|.+.. .|.|++||++++.+||++|+++||+|++|.
T Consensus 356 qeri~dde~ilikg~ka~--------------------------------~aSiILrgaNd~~~DEmers~hdaL~Vlkr 403 (545)
T KOG0360|consen 356 QERIGDDELILIKGTKAT--------------------------------SASIILRGANDFMLDEMERSLHDALCVLKR 403 (545)
T ss_pred HHhcccceeEEeccCccc--------------------------------eeeEEEecCCcccHhhhccchhhHHHHHHH
Confidence 789999999886543 489999999999999999999999999999
Q ss_pred HHHcC-CcCChhHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc-----------
Q 012481 355 AKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ----------- 420 (462)
Q Consensus 355 a~~~g-vVpGGGa~el~~s~~L~~~~~~-~~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~~----------- 420 (462)
.++++ +|||||++|.+++-+|+.|+.. +++||.++..|++||..+|++|+-||+.|+.+. .+++..
T Consensus 404 tLes~~vvpGGG~vE~aLs~yle~~a~s~~srE~laiaefa~all~ipktla~naa~Dstelvt~lra~Hs~~q~~p~~~ 483 (545)
T KOG0360|consen 404 TLESKSVVPGGGAVETALSIYLENFATSVGSREQLAIAEFAAALLSIPKTLAVNAAKDSTELVTKLRAYHSVSQDNPWRL 483 (545)
T ss_pred HhccCccccCccHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhcchHHHhhhhccccccccccccCCchhhccCCccc
Confidence 99998 9999999999999999999987 799999999999999999999999999999999 998751
Q ss_pred CCCCccccccC----CchhcCCccccccHHHHHHHHHHHHHHHhcC
Q 012481 421 DSSDLGYNPAR----DMFKCGDVDPLKHVPSEFAKATSMISLKNAI 462 (462)
Q Consensus 421 ~~~~~G~d~~~----dm~~~gI~dP~~v~~~al~~A~~~A~~lL~i 462 (462)
+..++|+|+.+ |.++.|+++|..+|...|+.|+++|.++|||
T Consensus 484 ~~k~~GldL~ng~~~dn~~~g~~ep~~~kvksLk~ateaaitiLri 529 (545)
T KOG0360|consen 484 LLKQYGLDLINGKIRDNKSAGSFEPPIVKVKSLKFATEAAITILRI 529 (545)
T ss_pred cchhhCccccccEeecceeeeeeccceeehhhhHHHHHhhhhhcch
Confidence 12478999987 9999999999999999999999999999997
No 40
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-57 Score=445.81 Aligned_cols=396 Identities=14% Similarity=0.127 Sum_probs=342.5
Q ss_pred HHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHHH
Q 012481 6 CSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNL 84 (462)
Q Consensus 6 ~~~lk~~~~~~p~~~~~~~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~i~~G~~~a~~~~~~~L 84 (462)
+.||.+|++.||+++.+ .++|++||+|||||||||++||+++|..+..+++ |+||+.+++.|.+|++.++..+
T Consensus 62 ~ailrei~Vahpaaksm------iel~rtqdeevgdgttsvi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~ 135 (527)
T KOG0364|consen 62 NAILREIDVAHPAAKSM------IELSRTQDEEVGDGTTSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRAL 135 (527)
T ss_pred HHHHHHHhhcCcchhhH------hhhhhcccccccCCceeeeeehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHH
Confidence 57999999999999966 5789999999999999999999999999999999 9999999999999999999999
Q ss_pred hccccccC--CHHHHHHHHHHhcCC------ChhHHHHHHHHHHhhccC-cc-eeE------e--cCCCccceeEEEeeE
Q 012481 85 DCQARKIT--TFEEIAQVGTTAANG------DGEIGELIAKVFEKGWEN-DL-ITI------F--DRKALYNELNFVKGM 146 (462)
Q Consensus 85 ~~~~~~v~--~~~~l~~vA~ts~~~------~~~l~~li~~a~~~vg~~-~~-I~v------~--~g~~~~d~~~~~~G~ 146 (462)
+.++.|++ |...+..+...+... ++.++++..+|+.+++.+ |. |.+ + +|+.++ ++.+.+|+
T Consensus 136 ~~~~~~~d~~~~~km~~vi~~~v~tk~~~~~~~~~~~lal~avk~V~~~~g~e~dik~y~kveKvpgg~l~-~s~vl~Gv 214 (527)
T KOG0364|consen 136 DKISIPVDVKDQAKMLRVINSSVGTKFNSRWSDLICNLALDAVKTVGVENGREIDIKRYAKVEKVPGGLLE-DSCVLKGV 214 (527)
T ss_pred HhhcccCCcccHHHHHhhhhhhhhhhhhhhhcchhhhHHHHHHHHhhhccCceechhhhccccccCccccc-ccceecce
Confidence 98888775 566777776655431 456788999999999864 32 322 2 566665 57899999
Q ss_pred EEeccccCCccccccccceeeecCceEEEeccccCC------------------------HHHHHHHHHHHHHcCCCEEE
Q 012481 147 KLEWGLKSPYFFTHKNKKECVLDGALVLIYDTKISN------------------------SNVIRQASLPCMMQGQSLLV 202 (462)
Q Consensus 147 ~~~~g~~~~~~~~~~~~~~~~l~~~~Il~~d~~i~~------------------------~~~i~~~le~i~~~g~~lvi 202 (462)
.+++...||.|. ..++||+|+++|.+++. .+++..+.+.|..-.-+||+
T Consensus 215 ~~nkdv~Hpkmr-------r~IenprivLlD~~LeykkGeSqtnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVi 287 (527)
T KOG0364|consen 215 MINKDVTHPKMR-------RAIENPRIVLLDCPLEYKKGESQTNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVI 287 (527)
T ss_pred eeccccCcHHHH-------HHhhcCcEEEecCCccCCCCccccceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEE
Confidence 999999999663 36899999999987542 12345666777766667888
Q ss_pred EecCcchhhHhhHHhhccCCCCcEEEEeecCcchhhhhhHHHHHHHhCCEEecCCCCCCccCCCCCCce-eeeEEEE---
Q 012481 203 VAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLG-SCKRVIA--- 278 (462)
Q Consensus 203 i~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tG~~i~~~~~~~~~~~~~~~~LG-~a~~v~i--- 278 (462)
+.+++++.+.++|..++ +-++++. ||.+..++|++||++++++ ++|+.+.+.| .|+.+++
T Consensus 288 tekG~sdla~hyl~k~~------iT~~rr~-----rKtDn~ria~acga~iv~r-----pedl~e~dvGt~agLf~~kK~ 351 (527)
T KOG0364|consen 288 TEKGVSDLAQHYLLKAN------ITAIRRL-----RKTDNNRIARACGARIVNR-----PEDLPERDVGTGAGLFEVKKI 351 (527)
T ss_pred eccchhHHHHHHHHhcC------chhhhhh-----hccccchhhhhcCceeccC-----hhhCchhccCcccceeeeecc
Confidence 89999999999999865 5567776 8988999999999999997 9999999999 5777764
Q ss_pred ecceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHc
Q 012481 279 TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE 358 (462)
Q Consensus 279 ~~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~a~~~ 358 (462)
+++.|+||..|++|++ |||++||+|..+++|.+|.+.||+.+.|+.+-+
T Consensus 352 gdeyf~f~~~Ck~pka-------------------------------Ctillrg~skdil~e~ernlqda~~varn~ii~ 400 (527)
T KOG0364|consen 352 GDEYFTFFTDCKEPKA-------------------------------CTILLRGPSKDILNEVERNLQDAMGVARNVIIN 400 (527)
T ss_pred CchhhhhhhhcCCCcc-------------------------------eEEEeccCchhHHHHHHHHhhhHHHHHHHhccC
Confidence 5677999999999964 999999999999999999999999999999998
Q ss_pred C-CcCChhHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHh---cCCCCccccccC-
Q 012481 359 G-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLE---QDSSDLGYNPAR- 431 (462)
Q Consensus 359 g-vVpGGGa~el~~s~~L~~~~~~-~~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~---~~~~~~G~d~~~- 431 (462)
+ .+||||++||.+|+.|.+.+.. ++-++.-+.+++.||+.+|++|++|+|.|+... ..+++ .+...+|+|..+
T Consensus 401 PklvPGGGAtEMAvs~~L~qksa~~~GVekwPY~Ava~AlEviPrtliqncGan~Ir~lTalr~kh~~G~~~~gi~g~tg 480 (527)
T KOG0364|consen 401 PKLVPGGGATEMAVSHELRQKSALMTGVEKWPYGAVAGALEVIPRTLIQNCGANPIRALTALRAKHKEGQRVWGIDGETG 480 (527)
T ss_pred CcccCCccHHHHHHHHHHHHHHhhccchhccchhhhhcCceeccHHHHhhcCccHHHHHHHHHHHhcCcceeecccCcee
Confidence 7 9999999999999999986665 888999999999999999999999999999988 77765 344567888877
Q ss_pred ---CchhcCCccccccHHHHHHHHHHHHHHHhcC
Q 012481 432 ---DMFKCGDVDPLKHVPSEFAKATSMISLKNAI 462 (462)
Q Consensus 432 ---dm~~~gI~dP~~v~~~al~~A~~~A~~lL~i 462 (462)
||.+.|+|+|..+|.+..++|.+.|+++|||
T Consensus 481 ~iVDm~~~~iwep~~vK~Q~~ktavesa~~LLRI 514 (527)
T KOG0364|consen 481 VIVDMVELGIWEPEAVKLQTGKTAVESACLLLRI 514 (527)
T ss_pred eEeeeeeccccchhhhhhhhhhHHHHHHHHHHhh
Confidence 9999999999999999999999999999997
No 41
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.2e-56 Score=443.95 Aligned_cols=395 Identities=16% Similarity=0.175 Sum_probs=329.3
Q ss_pred HHHHhhhccccCccccccchhhhhhhhhhhhcccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHH
Q 012481 5 ACSLASRVRLINTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRN 83 (462)
Q Consensus 5 ~~~~lk~~~~~~p~~~~~~~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~i~~G~~~a~~~~~~~ 83 (462)
|-+|+++++++||++|++ +..+++|++++||||+++|+|+++||++|.++|. |++|.+|++||+.|...+++.
T Consensus 68 aatIlrelev~HPaakll------v~a~~~q~~~iGDgtnfvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~ 141 (537)
T KOG0362|consen 68 AATILRELEVEHPAAKLL------VEATQMQEEEIGDGTNFVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEI 141 (537)
T ss_pred hHHHHHHhhccCcHHHHH------HHHHHHHHHhhCCCceEeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 779999999999999966 6789999999999999999999999999999999 999999999999999999999
Q ss_pred Hhccccc-cCCHHHHHHHHHHhcC-----CChhHHHHHHHHHHhhccCc-----ceeE--ecCCCccceeEEEeeEEEec
Q 012481 84 LDCQARK-ITTFEEIAQVGTTAAN-----GDGEIGELIAKVFEKGWEND-----LITI--FDRKALYNELNFVKGMKLEW 150 (462)
Q Consensus 84 L~~~~~~-v~~~~~l~~vA~ts~~-----~~~~l~~li~~a~~~vg~~~-----~I~v--~~g~~~~d~~~~~~G~~~~~ 150 (462)
|+++... +.|.++..++++++++ +++++++++++|+..+.+.+ +|+| ..|++.+ ++.++.||+|.+
T Consensus 142 l~~lv~~~~~d~~d~~~~~rs~i~skq~~~ed~l~~lVa~ac~si~p~~~FnvdnIrVcKi~Gg~l~-~S~Vv~GmVfkr 220 (537)
T KOG0362|consen 142 LPELVVQSIGDLEDKEWALRSVIMSKQYGNEDFLTKLVAKACVSILPLMSFNVDNIRVCKILGGGLE-DSCVVCGMVFKR 220 (537)
T ss_pred hHHHHHHhcccccChHHHHHHHHHHhhcchHHHHHHHHHHHHHhhcccccccccceEEEEEecCCcc-cceeeEEEEecc
Confidence 9997643 2233223345554442 37899999999999987663 3444 2677776 478999999998
Q ss_pred cccCCccccccccceeeecCceEEEeccc-------------cCCHHH-----------HHHHHHHHHHcCCCEEEEecC
Q 012481 151 GLKSPYFFTHKNKKECVLDGALVLIYDTK-------------ISNSNV-----------IRQASLPCMMQGQSLLVVAED 206 (462)
Q Consensus 151 g~~~~~~~~~~~~~~~~l~~~~Il~~d~~-------------i~~~~~-----------i~~~le~i~~~g~~lvii~~~ 206 (462)
.....- + .-...+|.++.++ |+++++ +....+.+..+|.++++..+.
T Consensus 221 ~~eG~v--~-------~ak~arvAvf~cP~d~~~TEtkgTvLi~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~ 291 (537)
T KOG0362|consen 221 DPEGEV--K-------SAKDARVAVFACPFDIAQTETKGTVLLKNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGK 291 (537)
T ss_pred ccCCcc--c-------ccccceeEEEecCCCcccccCcceeeecCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCc
Confidence 754321 1 2233344444433 455544 445567788899999999999
Q ss_pred cchhhHhhHHhhccCCCCcEEEEeecCcchhhhhhHHHHHHHhCCEEecCCCCCCccCCCCCCceeeeEE---EEecceE
Q 012481 207 VENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRV---IATMDNV 283 (462)
Q Consensus 207 i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tG~~i~~~~~~~~~~~~~~~~LG~a~~v---~i~~~~~ 283 (462)
+++..|+++-. ++|+++|.++ |.+|.+||+..||++.++ +..+.++.+|+|++| +++++.+
T Consensus 292 V~em~Lhflnk------y~ImVlqi~S-----k~eLrrlcrtvGA~~l~r-----l~~P~~~~lG~~d~V~~~EiG~~~v 355 (537)
T KOG0362|consen 292 VDEMTLHFLNK------YKIMVLQINS-----KFDLRRLCRTVGATALPR-----LFPPAPEELGYCDSVSTQEIGDTLV 355 (537)
T ss_pred cchhhhhhhcc------ccEEEEEecc-----HhhHHHHHHHcCCccchh-----ccCCCCccccccceeeeeecCCceE
Confidence 99999985443 7899999994 778999999999999986 888888999999988 4677777
Q ss_pred EEEcC-CCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcC-Cc
Q 012481 284 VIIGG-SGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG-IV 361 (462)
Q Consensus 284 ~~~~g-~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~a~~~g-vV 361 (462)
|+|.. ++. +.++||++||+|+..+|+.||+++|++++.|..++++ ++
T Consensus 356 ~vF~~e~~~-------------------------------~~~~TvVLRgst~s~LDd~ERAVddgV~tyK~l~~d~rLl 404 (537)
T KOG0362|consen 356 VVFRWESTG-------------------------------TRVATVVLRGATQSILDDAERAVDDGVNTYKALCSDSRLL 404 (537)
T ss_pred EEEeeccCC-------------------------------CceeEEEEcccchhhHHHHHHHHHHhHHHhhhhccCCccc
Confidence 76654 322 2578999999999999999999999999999999986 99
Q ss_pred CChhHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHhc--CCCCccccccC-----C
Q 012481 362 PGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASNAGVDGSVI-DKLLEQ--DSSDLGYNPAR-----D 432 (462)
Q Consensus 362 pGGGa~el~~s~~L~~~~~~-~~~~~~gi~~~a~AL~~~~~~La~NaG~d~~~v-~~l~~~--~~~~~G~d~~~-----d 432 (462)
||+|++|+++++.|.+|... +|..|+++..|++||+..|++||+|||++..++ ++|.+. +..+.|+|+.. |
T Consensus 405 pGagatEieLak~i~~~g~~~~Gl~q~Aik~fa~Ale~~PktlaEnagl~~~evia~ly~~h~~g~~~g~di~~e~~~~d 484 (537)
T KOG0362|consen 405 PGAGATEIELAKQISSRGATLPGLKQLAIKKFAEALEVLPKTLAENAGLAVTEVIAKLYAVHQGGKNLGMDIEAEGGTID 484 (537)
T ss_pred cCCchhHHHHHHHHHHhcccCCCcchhHHHHHHHHhccccHhHHHhcCCcHHHHHHHHHHhhcCCCcceeeeeccccccC
Confidence 99999999999999999886 999999999999999999999999999999999 999763 23556777654 9
Q ss_pred chhcCCccccccHHHHHHHHHHHHHHHhcC
Q 012481 433 MFKCGDVDPLKHVPSEFAKATSMISLKNAI 462 (462)
Q Consensus 433 m~~~gI~dP~~v~~~al~~A~~~A~~lL~i 462 (462)
+.++||||-+.+|.++++.|+++|.++|++
T Consensus 485 ~~~~~i~D~~~~K~~a~k~at~aa~tvl~v 514 (537)
T KOG0362|consen 485 VREEGIWDTLAVKAQAIKLATEAALTVLTV 514 (537)
T ss_pred hhhhchHHHHHHHHHHHHHHHhhhheeeeh
Confidence 999999999999999999999999999875
No 42
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-54 Score=413.95 Aligned_cols=302 Identities=18% Similarity=0.192 Sum_probs=276.1
Q ss_pred cCccccccchhhhhhhhhhhhcccccCCcchHHHhhhHHHHHHHhhcC-CCChHHHHHHHHHHHHHHHHHHhccccccCC
Q 012481 15 INTTGTQPVCCTWSRNYGAEDTKRFIDCTKYESVLVKAPNDEAFKALG-RANLTGLTQGFRMAADAVVRNLDCQARKITT 93 (462)
Q Consensus 15 ~~p~~~~~~~~~~~~~~a~~qd~~vGDGTTt~vvLa~~Ll~~~~~li~-G~~P~~i~~G~~~a~~~~~~~L~~~~~~v~~ 93 (462)
.|++++.+ ..+++.||.++|||||.+++|++++++++.+++. |+||..|..||+++...++++|.+.+.+.+
T Consensus 71 d~~IakLm------v~LS~sqd~eIgdGtTgVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i~~~~e- 143 (400)
T KOG0357|consen 71 VHQIAKLI------VILSKSQDDEIGDGTTGVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEISDPFE- 143 (400)
T ss_pred chHHHHHH------HHhcccchhhhccCCcccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhhccccc-
Confidence 35666644 5689999999999999999999999999999999 999999999999999999999999887765
Q ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHhhccCcceeEecCCCccceeEEEeeEEEeccccCCccccccccceeeecCceE
Q 012481 94 FEEIAQVGTTAANGDGEIGELIAKVFEKGWENDLITIFDRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALV 173 (462)
Q Consensus 94 ~~~l~~vA~ts~~~~~~l~~li~~a~~~vg~~~~I~v~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~l~~~~I 173 (462)
T Consensus 144 -------------------------------------------------------------------------------- 143 (400)
T KOG0357|consen 144 -------------------------------------------------------------------------------- 143 (400)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeccccCCHHHHHHHHHHHHHcCCCEEEEecCcchhhHhhHHhhccCCCCcEEEEeecCcchhhhhhHHHHHHHhCCEE
Q 012481 174 LIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQV 253 (462)
Q Consensus 174 l~~d~~i~~~~~i~~~le~i~~~g~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tG~~i 253 (462)
+.+++++++++|.+|+||+|+|||++.++|..|++. |||++|- . ++|-||++|||++
T Consensus 144 ------------f~emi~~vK~~ga~l~icqwgfddeanhll~~n~lp------avrwVGG----p-EiEliAiaT~grI 200 (400)
T KOG0357|consen 144 ------------FEEMIQQIKETGANLAICQWGFDDEANHLLLQNNLP------AVRWVGG----P-EIELIAIATGGRI 200 (400)
T ss_pred ------------HHHHHHHHHhhCCcEEEEecccCchhhhHHhhcCCC------ceeecCC----c-ceEEEEeecCCee
Confidence 456788899999999999999999999999998754 7998862 3 3999999999999
Q ss_pred ecCCCCCCccCCCCCCceeeeEEEE-----ecceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEE
Q 012481 254 LTGGSGMNSTYFVPLKLGSCKRVIA-----TMDNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVL 328 (462)
Q Consensus 254 ~~~~~~~~~~~~~~~~LG~a~~v~i-----~~~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI 328 (462)
+.+ |+++++++||+|+.|+. ++|+..+++.|++.++ .||
T Consensus 201 Vpr-----F~eL~~~kLG~aglVrE~sfgttkdkmlviEqc~nska-------------------------------VTi 244 (400)
T KOG0357|consen 201 VPR-----FSELTAEKLGFAGLVREISFGTTKDKMLVIEQCKNSKA-------------------------------VTI 244 (400)
T ss_pred ecc-----HhhhCHhhccccceEEEEecccccceEEEEEecCCCce-------------------------------EEE
Confidence 996 99999999999999863 4788999999998865 699
Q ss_pred EeccCcHhHHHHHHHHHHHHHHHHHHHHHcC-CcCChhHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHHHHHh
Q 012481 329 KVCGHGKAEVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKLQTT-NSDQKIGVQIVQNALKMAAYLIASN 406 (462)
Q Consensus 329 ~v~G~t~~~l~E~~~~~~DAl~a~k~a~~~g-vVpGGGa~el~~s~~L~~~~~~-~~~~~~gi~~~a~AL~~~~~~La~N 406 (462)
+|||++..+++|.+|++|||||++||.+++. +|+|||++|+.||-++.+-+.. ++.+||++++|++||+.||..||+|
T Consensus 245 fvRg~Nkmii~EakrslhdalCvirnlird~rivYgGGaaEiscslav~~ead~~~g~eqya~rafa~ale~ipmalaen 324 (400)
T KOG0357|consen 245 FVRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEISCALAVSQEADKIPGIEQYAFRAFADALESIPMALAEN 324 (400)
T ss_pred EEecCcceeHHHHHHHhhhhHHHHHHHhhcCeeEecCchHHhhhhhHhhHhhccCCcHHHHHHHHHHHHHhhcchhhhhc
Confidence 9999999999999999999999999999986 9999999999999999888776 9999999999999999999999999
Q ss_pred cCCChHHH-HHHHh----cCCCCccccccC----CchhcCCccccccHHHHHHHHHHHHHHHhcC
Q 012481 407 AGVDGSVI-DKLLE----QDSSDLGYNPAR----DMFKCGDVDPLKHVPSEFAKATSMISLKNAI 462 (462)
Q Consensus 407 aG~d~~~v-~~l~~----~~~~~~G~d~~~----dm~~~gI~dP~~v~~~al~~A~~~A~~lL~i 462 (462)
+|++|++. +++++ ..++++|+|+.. ||++.+++||+..|++.+..|+.++.|+|+|
T Consensus 325 sgl~pi~~ls~~ka~q~~~~~~~lGidcl~~G~nDMk~~~vie~l~~KkqQi~laTQ~vrMiLKi 389 (400)
T KOG0357|consen 325 SGLDPIETLSDVKARQVKEMNPALGIDCLHKGTNDMKEQHVIETLIGKKQQISLATQMVRMILKI 389 (400)
T ss_pred cCCCchhhhhHhHHHHHHhcCcccCcchhccCchhhhhhccHHHhhhhHHHHHHHHHHHHHhhhc
Confidence 99999999 88865 356889999986 9999999999999999999999999999987
No 43
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=99.96 E-value=9.3e-28 Score=228.00 Aligned_cols=192 Identities=26% Similarity=0.348 Sum_probs=164.8
Q ss_pred HHHHHHHHHhcC-----CChhHHHHHHHHHHhhcc------CcceeEe--cCCCccceeEEEeeEEEeccccCCcccccc
Q 012481 95 EEIAQVGTTAAN-----GDGEIGELIAKVFEKGWE------NDLITIF--DRKALYNELNFVKGMKLEWGLKSPYFFTHK 161 (462)
Q Consensus 95 ~~l~~vA~ts~~-----~~~~l~~li~~a~~~vg~------~~~I~v~--~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~ 161 (462)
+.|.++|+++.+ .++.+++++++|+..+++ .+.|.++ +|++. .++++++|++|+++|.+|+|+
T Consensus 2 ~~l~~ia~ts~~sk~~~~~~~l~~l~~~Av~~v~~~~~~~~~~~I~i~~~~gg~~-~ds~li~Gv~~~~~~~~~~m~--- 77 (209)
T cd03333 2 ELLLQVATTSLNSKLSSWDDFLGKLVVDAVLKVGPDNRMDDLGVIKVEKIPGGSL-EDSELVVGVVFDKGYASPYMP--- 77 (209)
T ss_pred hHHHHHHHHHhccchhhHHHHHHHHHHHHHHHhhccCCCCchHHEEEEEecCcCh-hhceeEeeEEEeccccCCCCC---
Confidence 468899999988 578899999999999987 3567775 55554 468899999999999999883
Q ss_pred ccceeeecCceEEEeccccCCHHHHHHHHHHHHHcCCCEEEEecCcchhhHhhHHhhccCCCCcEEEEeecCcchhhhhh
Q 012481 162 NKKECVLDGALVLIYDTKISNSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAI 241 (462)
Q Consensus 162 ~~~~~~l~~~~Il~~d~~i~~~~~i~~~le~i~~~g~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ 241 (462)
..++||+|++++.+++. +++++++|++.++++|..+ +|++|++. ++.+
T Consensus 78 ----~~~~n~~Ill~~~~le~-----------------vii~~~~I~~~al~~l~~~------~I~~v~~~-----~~~~ 125 (209)
T cd03333 78 ----KRLENAKILLLDCPLEY-----------------VVIAEKGIDDLALHYLAKA------GIMAVRRV-----KKED 125 (209)
T ss_pred ----eEcCCCcEEEEeCCeeE-----------------EEEecCcccHHHHHHHHHC------CCEEEEeC-----CHHH
Confidence 37899999999999886 7777888999999998874 48999997 4667
Q ss_pred HHHHHHHhCCEEecCCCCCCccCCCCCCceeeeEEEEec---ceEEEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHH
Q 012481 242 MEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATM---DNVVIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRL 318 (462)
Q Consensus 242 ledla~~tG~~i~~~~~~~~~~~~~~~~LG~a~~v~i~~---~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl 318 (462)
|+|||++|||+++++ ++++++++||+|+++++.+ +.++++.+++.+
T Consensus 126 l~~ia~~tga~ii~~-----~~~~~~~~lG~~~~v~~~~~~~~~~~~~~~~~~~-------------------------- 174 (209)
T cd03333 126 LERIARATGATIVSS-----LEDLTPEDLGTAELVEETKIGEEKLTFIEGCKGG-------------------------- 174 (209)
T ss_pred HHHHHHHHCCEEecc-----cccCChhhceeeeEEEEEEECCeEEEEEEcCCCC--------------------------
Confidence 999999999999996 8889999999999998653 457888887653
Q ss_pred hhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHc
Q 012481 319 AKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE 358 (462)
Q Consensus 319 ~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~a~~~ 358 (462)
+.|||+|||+|+++++|.||+++||++++++++++
T Consensus 175 -----~~~tIllrG~t~~~l~e~kr~l~dal~~~~~~~~~ 209 (209)
T cd03333 175 -----KAATILLRGATEVELDEVKRSLHDALCAVRAAVEE 209 (209)
T ss_pred -----CEEEEEEECCCHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 56999999999999999999999999999999864
No 44
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=99.94 E-value=3.6e-25 Score=217.01 Aligned_cols=198 Identities=12% Similarity=0.154 Sum_probs=163.1
Q ss_pred ChhHHHHHHHHHHhhccC----c------ceeEe--cCCCccceeEEEeeEEEeccccCCccccccccceeeecCceEEE
Q 012481 108 DGEIGELIAKVFEKGWEN----D------LITIF--DRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLI 175 (462)
Q Consensus 108 ~~~l~~li~~a~~~vg~~----~------~I~v~--~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Il~ 175 (462)
.+.|++++++|+..+.++ + .|+|+ +|++. +++++++|+++++++.++.|++ .++||+|++
T Consensus 20 ~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~-~dS~li~Gvvi~k~~~~~~m~~-------~i~n~kIll 91 (261)
T cd03334 20 LDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSP-SDSEVVDGVVFTKNVAHKRMPS-------KIKNPRILL 91 (261)
T ss_pred HHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCH-HHcEEEeeEEEeCCCCCccCCc-------ccCCCcEEE
Confidence 467999999999888522 1 25554 67766 4689999999999988876643 789999999
Q ss_pred eccccCCH------H-----------HHHHHHHHHHHcCCCEEEEecCcchhhHhhHHhhccCCCCcEEEEeecCcchhh
Q 012481 176 YDTKISNS------N-----------VIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDR 238 (462)
Q Consensus 176 ~d~~i~~~------~-----------~i~~~le~i~~~g~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r 238 (462)
++.+++.. . .+..++++++..|.++++++++|++.++++|..+ +|++++++ +
T Consensus 92 l~~~Le~~~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~------gI~~v~~v-----~ 160 (261)
T cd03334 92 LQGPLEYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEA------GITLVLNV-----K 160 (261)
T ss_pred EeeeeccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHC------CCEEEEec-----C
Confidence 99876432 1 2456678899999999999999999999999874 48999999 3
Q ss_pred hhhHHHHHHHhCCEEecCCCCCCccCCCCCCceeeeEEEEe---c-----ceEEEEcCCCChhhHHHHHHHHHHHhhhcc
Q 012481 239 KAIMEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIAT---M-----DNVVIIGGSGELVDIQERCEQLRSTIKLST 310 (462)
Q Consensus 239 ~~~ledla~~tG~~i~~~~~~~~~~~~~~~~LG~a~~v~i~---~-----~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~ 310 (462)
+++|++||++|||+++++. .+++++++||+|++|++. + ++++++++|+.+
T Consensus 161 ~~dl~rIa~~tGa~ii~~i----~~~~~~~~lG~~~~v~~~~ig~~~~~~~~~~~~~~~~~~------------------ 218 (261)
T cd03334 161 PSVLERISRCTGADIISSM----DDLLTSPKLGTCESFRVRTYVEEHGRSKTLMFFEGCPKE------------------ 218 (261)
T ss_pred HHHHHHHHHHhCCEEecCh----hhhcCcccCcCcceEEEEEecCcCCCceeEEEEecCCCC------------------
Confidence 5669999999999999861 247888999999999753 3 478999998765
Q ss_pred cHHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHcC
Q 012481 311 SDKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEEG 359 (462)
Q Consensus 311 s~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~a~~~g 359 (462)
+.+||+|||+|++.++|.||+++||+++++++..+.
T Consensus 219 -------------~~~TIlLRG~t~~~lde~eR~i~Dal~v~~~~~le~ 254 (261)
T cd03334 219 -------------LGCTILLRGGDLEELKKVKRVVEFMVFAAYHLKLET 254 (261)
T ss_pred -------------ceeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 458999999999999999999999999999997764
No 45
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=98.66 E-value=2.5e-07 Score=105.42 Aligned_cols=203 Identities=13% Similarity=0.174 Sum_probs=142.4
Q ss_pred HHHHHHHHHHhhccC----------cceeEe--cCCCccceeEEEeeEEEeccccCCccccccccceeeecCceEEEecc
Q 012481 111 IGELIAKVFEKGWEN----------DLITIF--DRKALYNELNFVKGMKLEWGLKSPYFFTHKNKKECVLDGALVLIYDT 178 (462)
Q Consensus 111 l~~li~~a~~~vg~~----------~~I~v~--~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Il~~d~ 178 (462)
+..++.+|...+.++ +.+.|+ .+++ ..+++++.|+++.+-..+-.|.+ ++++|+|++..+
T Consensus 337 i~~L~~eaa~~~kp~~~~~~~md~~~YVkvK~I~~g~-~~dS~vi~Gvv~sKn~~~k~M~~-------~~e~prilll~g 408 (1598)
T KOG0230|consen 337 ITSLCWEAANLLKPDTDSGGLMDPGNYVKVKCVAGGS-RVDSEVIKGVVCSKNVAHKRMAT-------KYENPRILLLGG 408 (1598)
T ss_pred HHHHHHHHHHhcCcCcccCCCcCcccceEEEEecCCC-cccceeeeEEEeecchhhhhhhh-------hccCCceEEEec
Confidence 455566666555432 124444 5555 45789999999998776655543 788899999876
Q ss_pred ccC---------CHH--------HHHHHHHHHHHcCCCEEEEecCcchhhHhhHHhhccCCCCcEEEEeecCcchhhhhh
Q 012481 179 KIS---------NSN--------VIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAI 241 (462)
Q Consensus 179 ~i~---------~~~--------~i~~~le~i~~~g~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ 241 (462)
.+. +.+ .+...+..|....-+++++.+++++.|..+|.. +++.-++-|| ...
T Consensus 409 ~leyqrisn~lsS~etvlqqE~e~lk~~varI~s~~p~vllVeksVS~~aqe~L~~---k~I~lvlnvK--------~s~ 477 (1598)
T KOG0230|consen 409 PLEYQRISNQLSSIETVLQQEKEYLKKVVARIESLRPDVLLVEKSVSRIAQELLLD---KGISLVLNVK--------RSL 477 (1598)
T ss_pred chhhhhhhccccchHHHHhhHHHHHHHHHHHHHhcCCCeEEEechHHHHHHHHhhc---cCeEEEEecc--------HHH
Confidence 533 222 233444445444556999999999999987774 3322233344 335
Q ss_pred HHHHHHHhCCEEecCCCCCCccCCCCCCceeeeEEEEec--------ceEEEEcCCCChhhHHHHHHHHHHHhhhcccHH
Q 012481 242 MEDLAILTGGQVLTGGSGMNSTYFVPLKLGSCKRVIATM--------DNVVIIGGSGELVDIQERCEQLRSTIKLSTSDK 313 (462)
Q Consensus 242 ledla~~tG~~i~~~~~~~~~~~~~~~~LG~a~~v~i~~--------~~~~~~~g~~~~~~i~~r~~~l~~~l~~~~s~~ 313 (462)
|+||++.|||.|+.+ ++.++.-.||+|..+++.+ ....|++||+.+.
T Consensus 478 leRIsR~tga~I~~s-----iDslt~~klg~C~~F~v~~~~e~hk~sKTlmffegc~~~l-------------------- 532 (1598)
T KOG0230|consen 478 LERISRCTGADIVPS-----VDSLTSQKLGYCELFRVENYVEEHKPSKTLMFFEGCPKPL-------------------- 532 (1598)
T ss_pred HHHHHHHhcCceecc-----hhhhhccccCCCccHhhhhhhhcccchhhhHHhhcCCCCC--------------------
Confidence 999999999999986 7888888999999987531 2257888888763
Q ss_pred HHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHH-HHHHcCCcCChhHHH
Q 012481 314 LKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQ-AAKEEGIVPGSGVAL 368 (462)
Q Consensus 314 l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k-~a~~~gvVpGGGa~e 368 (462)
-|||++||++..++.+.++-+.=.+-++- .+++.-++.--|+..
T Consensus 533 -----------G~TiLLrG~~~~eLkkVK~Vvq~~v~aay~l~LE~SflaDe~asi 577 (1598)
T KOG0230|consen 533 -----------GCTILLRGDSLEELKKVKHVVQYLVFAAYHLALETSFLADEGASI 577 (1598)
T ss_pred -----------CceEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCcc
Confidence 38999999999999999988877776665 456666776666544
No 46
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.00024 Score=76.40 Aligned_cols=89 Identities=15% Similarity=0.149 Sum_probs=72.1
Q ss_pred HHHHHHHHHHcCCC-EEEEecCcchhhHhhHHhhccCCCCcEEEEeecCcchhhhhhH-HHHHHHhCCEEecCCCCCCcc
Q 012481 186 IRQASLPCMMQGQS-LLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIM-EDLAILTGGQVLTGGSGMNST 263 (462)
Q Consensus 186 i~~~le~i~~~g~~-lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~l-edla~~tG~~i~~~~~~~~~~ 263 (462)
+..+.+.+.+.|.+ +++++++|+|.+.++|..+ .|++++++. ++++ ++|+.+|||++++. ++
T Consensus 259 l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~------~Ilt~~~v~-----~~dl~~~l~~~~ga~~v~~-----~~ 322 (524)
T COG0459 259 LATLVVNILRGGANVVVVKAPGIDDLAKAYLEDI------AILTGRRVK-----KEDLGERLAKLGGAKIVSV-----LK 322 (524)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhh------cceecceec-----chhhHHHHHHccCceEEee-----cc
Confidence 34556667788999 8889999999999999975 488999983 5558 79999999999997 89
Q ss_pred CCCCCCcee--eeEEEEe---cceEEEEcCCC
Q 012481 264 YFVPLKLGS--CKRVIAT---MDNVVIIGGSG 290 (462)
Q Consensus 264 ~~~~~~LG~--a~~v~i~---~~~~~~~~g~~ 290 (462)
+.++..+|. |+.|+.. +++++++.++.
T Consensus 323 d~t~~~~G~~~~~~ve~~~~~~~~~~~~~~~~ 354 (524)
T COG0459 323 DLTTIVLGEGAAGLVEETKTGDYDMEKLQERK 354 (524)
T ss_pred cCceeecCccccceEEEeeccchhhhhhhhhh
Confidence 999999999 9998753 44566666554
No 47
>smart00574 POX domain associated with HOX domains.
Probab=50.12 E-value=32 Score=30.48 Aligned_cols=54 Identities=20% Similarity=0.272 Sum_probs=39.6
Q ss_pred HHHHHHHhhhcCCeEEEEeccCcHhHHHHHHHHHHHHHHHHHHHHHc-CCcCChhHHHHHHHHHHHHh
Q 012481 312 DKLKDRLAKLSGGYAVLKVCGHGKAEVREKKLKITNALHAVQAAKEE-GIVPGSGVALLYASKELDKL 378 (462)
Q Consensus 312 ~~l~~Rl~~l~g~~~tI~v~G~t~~~l~E~~~~~~DAl~a~k~a~~~-gvVpGGGa~el~~s~~L~~~ 378 (462)
..++.|.++|-. .++|.+++++--..-++..+.+ ..|+|.|++-.+.+-+|+..
T Consensus 73 ~e~q~kk~kLl~-------------mL~eVd~RY~qY~~qmq~v~ssFe~vaG~g~a~~yt~lAl~a~ 127 (140)
T smart00574 73 QELQRKKAKLLS-------------MLEEVDRRYKHYYEQMQTVVSSFDQAAGLGAAKPYTALALKTI 127 (140)
T ss_pred HHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 455566666543 6788888888888888777776 48899999888877777543
No 48
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=42.38 E-value=60 Score=26.29 Aligned_cols=55 Identities=16% Similarity=0.104 Sum_probs=33.5
Q ss_pred HHHHHHHHcCCCEEEEecCcchhhHhhHHhhccCCCCcEEEEeecCcchhhhhhHHHHHHHhCCE
Q 012481 188 QASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQ 252 (462)
Q Consensus 188 ~~le~i~~~g~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tG~~ 252 (462)
+-++.+.+....+|++++|+++....-+..--.+..+++ +-.++ +++|-++||-.
T Consensus 20 qt~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~--v~V~s--------~~~LGkAcgi~ 74 (84)
T PRK13600 20 ETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPV--SFFKS--------KHALGKHVGIN 74 (84)
T ss_pred HHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCE--EEECC--------HHHHHHHhCCC
Confidence 345555555567999999999998775543212222333 33342 67788888753
No 49
>PF07526 POX: Associated with HOX; InterPro: IPR006563 This domain in found exclusively in plant proteins, associated with HOX domains which may suggest these proteins are homeodomain transcription factors.
Probab=37.92 E-value=50 Score=29.37 Aligned_cols=42 Identities=21% Similarity=0.226 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CcCChhHHHHHHHHHHHHh
Q 012481 337 EVREKKLKITNALHAVQAAKEEG-IVPGSGVALLYASKELDKL 378 (462)
Q Consensus 337 ~l~E~~~~~~DAl~a~k~a~~~g-vVpGGGa~el~~s~~L~~~ 378 (462)
.++|.+++++--..=++..+.+. .|.|.|++-.+.+-+|+..
T Consensus 85 mL~eVd~RY~qY~~Qmq~VvssFe~vaG~gaA~~YtalAlqam 127 (140)
T PF07526_consen 85 MLDEVDRRYRQYYDQMQAVVSSFEAVAGLGAAAPYTALALQAM 127 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhHHHHHHHH
Confidence 67788888777777777666664 7889999888887777544
No 50
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=34.87 E-value=16 Score=39.68 Aligned_cols=61 Identities=18% Similarity=0.174 Sum_probs=49.3
Q ss_pred HcCCCEEEEecCcch-----hhHhhHHhhccCCC----CcEEEEeecCcchhhhhhHHHHHHHhCCEEecC
Q 012481 195 MQGQSLLVVAEDVEN-----EVLGDIATDFTCTT----EKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTG 256 (462)
Q Consensus 195 ~~g~~lvii~~~i~~-----~al~~l~~n~~~~~----~~i~avk~~~~g~~r~~~ledla~~tG~~i~~~ 256 (462)
+...|+.+..+++++ +++..+..|+.++. .++++++.+ +++.+...|+|..++++.++...
T Consensus 245 ~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~-i~d~~~~~L~~~~I~~~~~v~~~ 314 (522)
T TIGR02345 245 AEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLP-IGDLATQYFADHNIFCAGRVSDE 314 (522)
T ss_pred ccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCC-ccHHHHHHHHHCCcEEEecCCHH
Confidence 344588888999998 88888888876653 488999988 99999999999999999876654
No 51
>PRK10343 RNA-binding protein YhbY; Provisional
Probab=32.58 E-value=2.3e+02 Score=23.54 Aligned_cols=67 Identities=18% Similarity=0.169 Sum_probs=42.9
Q ss_pred HHHHHHHHHcCCCEEEEec-CcchhhHhhHHhhccC-CCCcEEEEeecCcchhhhhhHHHHHHHhCCEEec
Q 012481 187 RQASLPCMMQGQSLLVVAE-DVENEVLGDIATDFTC-TTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLT 255 (462)
Q Consensus 187 ~~~le~i~~~g~~lvii~~-~i~~~al~~l~~n~~~-~~~~i~avk~~~~g~~r~~~ledla~~tG~~i~~ 255 (462)
..+|......=.|+|.|.+ ++++.++..+-..-.. ..++|=+.+ ...+.|++..+.||..||+.++.
T Consensus 8 r~~LR~~ah~l~Pvv~IGk~Glt~~vi~ei~~aL~~hELIKvkv~~--~~~~~~~e~~~~i~~~~~ae~Vq 76 (97)
T PRK10343 8 KQHLKGLAHPLKPVVLLGSNGLTEGVLAEIEQALEHHELIKVKIAT--EDRETKTLIVEAIVRETGACNVQ 76 (97)
T ss_pred HHHHHHhcCCCCCeEEECCCCCCHHHHHHHHHHHHHCCcEEEEecC--CChhHHHHHHHHHHHHHCCEEEe
Confidence 4556665555579998865 9999988865532211 112333222 23345777789999999999885
No 52
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=29.32 E-value=1.1e+02 Score=33.27 Aligned_cols=44 Identities=14% Similarity=0.014 Sum_probs=27.6
Q ss_pred HHHHHhhccCcceeEecCCCccc-eeEEEeeEEEeccccCCcccc
Q 012481 116 AKVFEKGWENDLITIFDRKALYN-ELNFVKGMKLEWGLKSPYFFT 159 (462)
Q Consensus 116 ~~a~~~vg~~~~I~v~~g~~~~d-~~~~~~G~~~~~g~~~~~~~~ 159 (462)
.+++..++.++.+.+.++....+ .+.-+.|..++.+|+.|+|+.
T Consensus 178 ~~~l~~i~~~av~~i~~~~~~~~I~i~ki~Ggsi~ds~lv~G~v~ 222 (533)
T PTZ00212 178 KDHFAKLAVDAVLRLKGSGNLDYIQIIKKPGGTLRDSYLEDGFIL 222 (533)
T ss_pred HHHHHHHHHHHHHHHhccCCccceEEEEecCcCccccEEEEeEEE
Confidence 45555566666666655444332 345556888888888888754
No 53
>PF01985 CRS1_YhbY: CRS1 / YhbY (CRM) domain; InterPro: IPR001890 The CRM domain is an ~100-amino acid RNA-binding domain. The name chloroplast RNA splicing and ribosome maturation (CRM) has been suggested to reflect the functions established for the four characterised members of the family: Zea mays (Maize) CRS1 (Q9FYT6 from SWISSPROT), CAF1 (Q84N49 from SWISSPROT) and CAF2 (Q84N48 from SWISSPROT) proteins and the Escherichia coli protein YhbY (P0AGK4 from SWISSPROT). The CRM domain is found in eubacteria, archaea, and plants. The CRM domain is represented as a stand-alone protein in archaea and bacteria, and in single- and multi-domain proteins in plants. It has been suggested that prokaryotic CRM proteins existed as ribosome-associated proteins prior to the divergence of archaea and bacteria, and that they were co-opted in the plant lineage as RNA binding modules by incorporation into diverse protein contexts. Plant CRM domains are predicted to reside not only in the chloroplast, but also in the mitochondrion and the nucleo/cytoplasmic compartment. The diversity of the CRM domain family in plants suggests a diverse set of RNA targets [, ]. The CRM domain is a compact alpha/beta domain consisting of a four-stranded beta sheet and three alpha helices with an alpha-beta-alpha-beta-alpha-beta-beta topology. The beta sheet face is basic, consistent with a role in RNA binding. Proximal to the basic beta sheet face is another moiety that could contribute to nucleic acid recognition. Connecting strand beta1 and helix alpha2 is a loop with a six amino acid motif, GxxG flanked by large aliphatic residues, within which one 'x' is typically a basic residue []. Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly. GFP fused to a single-domain CRM protein from maize localises to the nucleolus, suggesting that an analogous activity may have been retained in plants []. A CRM domain containing protein in plant chloroplasts has been shown to function in group I and II intron splicing []. In vitro experiments with an isolated maize CRM domain have shown it to have RNA binding activity. These and other results suggest that the CRM domain evolved in the context of ribosome function prior to the divergence of Archaea and Bacteria, that this function has been maintained in extant prokaryotes, and that the domain was recruited to serve as an RNA binding module during the evolution of plant genomes []. YhbY has a fold similar to that of the C-terminal domain of translation initiation factor 3 (IF3C), which binds to 16S rRNA in the 30S ribosome [].; GO: 0003723 RNA binding; PDB: 1RQ8_A 1JO0_B 1LN4_A.
Probab=27.98 E-value=1.8e+02 Score=23.28 Aligned_cols=67 Identities=22% Similarity=0.300 Sum_probs=39.6
Q ss_pred HHHHHHHHcCCCEEEEec-CcchhhHhhHHhhccCCCCcEEEEeecC-cchhhhhhHHHHHHHhCCEEecC
Q 012481 188 QASLPCMMQGQSLLVVAE-DVENEVLGDIATDFTCTTEKVCIIKAAG-LAEDRKAIMEDLAILTGGQVLTG 256 (462)
Q Consensus 188 ~~le~i~~~g~~lvii~~-~i~~~al~~l~~n~~~~~~~i~avk~~~-~g~~r~~~ledla~~tG~~i~~~ 256 (462)
.+|......-.|++.+.+ ++++.++..+-..-.. ..++=||..+ ..+.+++..+.|+..|||.++..
T Consensus 7 ~~Lr~~a~~l~p~v~IGk~Glt~~vi~~i~~~l~~--~eLvKVk~~~~~~~~~~~~~~~l~~~t~~~~V~~ 75 (84)
T PF01985_consen 7 KFLRKLAHHLKPVVQIGKNGLTDGVIEEIDDALEK--HELVKVKVLGNCREDRKEIAEQLAEKTGAEVVQV 75 (84)
T ss_dssp HHHHHHHTTC--SEEE-TTSS-HHHHHHHHHHHHH--HSEEEEEETT--HHHHHHHHHHHHHHHTEEEEEE
T ss_pred HHHHHHhcCCCCeEEECCCCCCHHHHHHHHHHHHh--CCeeEEEEccCCHHHHHHHHHHHHHHhCCEEEEE
Confidence 345555555578888865 8998888755432111 1345556555 33446677899999999998863
No 54
>PRK06683 hypothetical protein; Provisional
Probab=27.02 E-value=1.5e+02 Score=23.69 Aligned_cols=53 Identities=19% Similarity=0.080 Sum_probs=31.7
Q ss_pred HHHHHHcCCCEEEEecCcchhhHhhHHhhccCCCCcEEEEeecCcchhhhhhHHHHHHHhCCE
Q 012481 190 SLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQ 252 (462)
Q Consensus 190 le~i~~~g~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tG~~ 252 (462)
++.+.+....+||+++|.++.....+..--.. .+|-.+..+ ..++|..+||-.
T Consensus 20 ~kaik~gkaklViiA~Da~~~~~~~i~~~~~~--~~Vpv~~~~--------t~~eLG~A~G~~ 72 (82)
T PRK06683 20 LEAIKNGIVKEVVIAEDADMRLTHVIIRTALQ--HNIPITKVE--------SVRKLGKVAGIQ 72 (82)
T ss_pred HHHHHcCCeeEEEEECCCCHHHHHHHHHHHHh--cCCCEEEEC--------CHHHHHHHhCCc
Confidence 45454444679999999999877655421111 223334433 257888888854
No 55
>COG1534 Predicted RNA-binding protein containing KH domain, possibly ribosomal protein [Translation, ribosomal structure and biogenesis]
Probab=25.27 E-value=3.8e+02 Score=22.31 Aligned_cols=67 Identities=21% Similarity=0.290 Sum_probs=44.1
Q ss_pred HHHHHHHHHcCCCEEEEec-CcchhhHhhHHhhc-cCCCCcEEEEeecCcchhhhhhHHHHHHHhCCEEec
Q 012481 187 RQASLPCMMQGQSLLVVAE-DVENEVLGDIATDF-TCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLT 255 (462)
Q Consensus 187 ~~~le~i~~~g~~lvii~~-~i~~~al~~l~~n~-~~~~~~i~avk~~~~g~~r~~~ledla~~tG~~i~~ 255 (462)
..+|..-...-.|++.+.+ ++++.++.-+-.-- -++.++|=..+... +.|++..+.||..+|+.++.
T Consensus 7 ~~~Lrs~Ah~l~piv~IGk~Glte~vi~Ei~~aL~~reLIKVkvl~~~~--edr~eia~~l~~~~~a~lVq 75 (97)
T COG1534 7 KRFLRSKAHHLKPIVQIGKNGLTEGVIKEIDRALEARELIKVKVLQNAR--EDKKEIAEALAEETGAELVQ 75 (97)
T ss_pred HHHHHHhhccCCceEEecCCccCHHHHHHHHHHHHhCCcEEEEeeccch--hhHHHHHHHHHHHhCCEEee
Confidence 3556665556689998865 88998887554211 23334555554432 34777789999999998874
No 56
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=24.99 E-value=1e+02 Score=27.40 Aligned_cols=42 Identities=17% Similarity=0.116 Sum_probs=30.4
Q ss_pred HHHHHHHHHcCCCEEEEecCcchhhHhhHHhhccCCCCcEEEEeecCcchhhhhhHHHHHHHhCCEEecCC
Q 012481 187 RQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLTGG 257 (462)
Q Consensus 187 ~~~le~i~~~g~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tG~~i~~~~ 257 (462)
-+.++.+.+.|+|++| +-|+.+. | +..+.|+.++||.++.+.
T Consensus 66 ~evi~~I~~~G~PviV-AtDV~p~---------------------P-------~~V~Kia~~f~A~ly~P~ 107 (138)
T PF04312_consen 66 SEVIEWISEYGKPVIV-ATDVSPP---------------------P-------ETVKKIARSFNAVLYTPE 107 (138)
T ss_pred HHHHHHHHHcCCEEEE-EecCCCC---------------------c-------HHHHHHHHHhCCcccCCC
Confidence 3557888899999887 3344322 2 247999999999999874
No 57
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=24.80 E-value=33 Score=36.51 Aligned_cols=39 Identities=26% Similarity=0.330 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHcCCcCChhHHHHHHHHHHHHhcC
Q 012481 342 KLKITNALHAVQAAKEEGIVPGSGVALLYASKELDKLQT 380 (462)
Q Consensus 342 ~~~~~DAl~a~k~a~~~gvVpGGGa~el~~s~~L~~~~~ 380 (462)
+|.+.||+..+|++.+-=+|.|||+-+-.+...|..|+.
T Consensus 216 ~~eL~~A~~lik~ak~PlIvaGGGv~YS~A~~~L~af~E 254 (617)
T COG3962 216 ERELADAAALIKSAKKPLIVAGGGVLYSGAREALRAFAE 254 (617)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCceeechHHHHHHHHHH
Confidence 456788999999886644999999999888888887764
No 58
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=24.47 E-value=2.7e+02 Score=22.32 Aligned_cols=53 Identities=17% Similarity=0.158 Sum_probs=31.0
Q ss_pred HHHHHHcCCCEEEEecCcchhhHhhHHhhccCCCCcEEEEeecCcchhhhhhHHHHHHHhCCE
Q 012481 190 SLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQ 252 (462)
Q Consensus 190 le~i~~~g~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tG~~ 252 (462)
++.+.+....|||++.|.++.....+..--....+++ +... ..++|..++|-.
T Consensus 17 lkaIk~gkakLViiA~Da~~~~~k~i~~~c~~~~Vpv--~~~~--------t~~eLG~A~G~~ 69 (82)
T PRK13601 17 LKAITNCNVLQVYIAKDAEEHVTKKIKELCEEKSIKI--VYID--------TMKELGVMCGID 69 (82)
T ss_pred HHHHHcCCeeEEEEeCCCCHHHHHHHHHHHHhCCCCE--EEeC--------CHHHHHHHHCCc
Confidence 4555455567999999999877665542111111233 3222 257888888853
No 59
>PLN03034 phosphoglycerate kinase; Provisional
Probab=23.31 E-value=7.4e+02 Score=26.76 Aligned_cols=148 Identities=14% Similarity=0.160 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCcchhhHhhHHhhccCCCCcEEEEeecCc--chhhhhhHHHHHHHhC--CEEecCCC
Q 012481 183 SNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGL--AEDRKAIMEDLAILTG--GQVLTGGS 258 (462)
Q Consensus 183 ~~~i~~~le~i~~~g~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~--g~~r~~~ledla~~tG--~~i~~~~~ 258 (462)
.+.+.+.|++.. |+++.++..-+++++......- ..| .|+.++..-| ++. +++ +.+++.+- +.++-.
T Consensus 152 L~pva~~Ls~lL--~~~V~fv~d~~G~~~~~~i~~l-~~G--eVlLLENvRF~~eE~-~nd-~~fa~~LA~l~DiyVN-- 222 (481)
T PLN03034 152 LAPLVPRLSELL--GIQVVKADDCIGPEVEKLVASL-PEG--GVLLLENVRFYKEEE-KNE-PEFAKKLASLADLYVN-- 222 (481)
T ss_pred HHHHHHHHHHHh--CCCeEECCCCCCHHHHHHHhcC-CCC--cEEEEeccCcCcccc-cCc-HHHHHHHHhhCCEEEe--
Confidence 344555566554 6777777666666665433221 122 4666666655 332 222 23333322 444443
Q ss_pred CCCccCCCCCCceeeeEEEEecceE-EEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHhH
Q 012481 259 GMNSTYFVPLKLGSCKRVIATMDNV-VIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKAE 337 (462)
Q Consensus 259 ~~~~~~~~~~~LG~a~~v~i~~~~~-~~~~g~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~~ 337 (462)
|-+|.+.+..-+--.+ .++..+-.-..++.-++.|.+.++... .-.+.+|||+
T Consensus 223 ---------DAFgtaHR~haS~vGi~~~l~ps~aG~LmekEl~~L~k~~~~p~-------------rP~vaIlGGa---- 276 (481)
T PLN03034 223 ---------DAFGTAHRAHASTEGVTKFLKPSVAGFLLQKELDYLVGAVSNPK-------------RPFAAIVGGS---- 276 (481)
T ss_pred ---------cchhhhHhcccchhhhhhhcCcchhhHHHHHHHHHHHHHHcCCC-------------CceEEEEcCc----
Confidence 3466666554322111 111111111233334444544443211 2357788885
Q ss_pred HHHHHHHHHHHHHHHHHHHH--cCCcCChhHHHHHH
Q 012481 338 VREKKLKITNALHAVQAAKE--EGIVPGSGVALLYA 371 (462)
Q Consensus 338 l~E~~~~~~DAl~a~k~a~~--~gvVpGGGa~el~~ 371 (462)
.+.|-+.++++.++ |.++.|||.+..-+
T Consensus 277 ------KVsdKI~vi~~Ll~kvD~lliGG~ma~tFl 306 (481)
T PLN03034 277 ------KVSSKIGVIESLLEKCDILLLGGGMIFTFY 306 (481)
T ss_pred ------cHHhHHHHHHHHHHhcCEEEECcHHHHHHH
Confidence 34778888888876 56999999998766
No 60
>TIGR00253 RNA_bind_YhbY putative RNA-binding protein, YhbY family. A combination of crystal structure, molecular modeling, and bioinformatic data together suggest that members of this family, including YhbY of E. coli, are RNA binding proteins.
Probab=23.26 E-value=4e+02 Score=21.99 Aligned_cols=67 Identities=18% Similarity=0.194 Sum_probs=43.1
Q ss_pred HHHHHHHHHcCCCEEEEec-CcchhhHhhHHhhcc-CCCCcEEEEeecCcchhhhhhHHHHHHHhCCEEec
Q 012481 187 RQASLPCMMQGQSLLVVAE-DVENEVLGDIATDFT-CTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQVLT 255 (462)
Q Consensus 187 ~~~le~i~~~g~~lvii~~-~i~~~al~~l~~n~~-~~~~~i~avk~~~~g~~r~~~ledla~~tG~~i~~ 255 (462)
..+|......=.|++.|.+ ++++.++..+-..-. +..++|=..+.. .+.+++..+.||..||+.++.
T Consensus 6 r~~Lr~~ah~l~p~v~IGK~Glt~~vi~ei~~aL~~hELIKVkvl~~~--~~~~~e~a~~i~~~~~a~~Vq 74 (95)
T TIGR00253 6 KRHLRGKAHHLKPVVLVGKNGLTEGVIKEIEQALEHRELIKVKVATED--REDKTLIAEALVKETGACNVQ 74 (95)
T ss_pred HHHHHHHhCCCCCeEEECCCCCCHHHHHHHHHHHHhCCcEEEEecCCC--hhHHHHHHHHHHHHHCCEEEE
Confidence 3456655444479998865 999998886553222 222344433322 344777789999999999886
No 61
>PLN02282 phosphoglycerate kinase
Probab=22.85 E-value=9.1e+02 Score=25.43 Aligned_cols=150 Identities=13% Similarity=0.152 Sum_probs=81.3
Q ss_pred CHHHHHHHHHHHHHcCCCEEEEecCcchhhHhhHHhhccCCCCcEEEEeecCc--chhhhhhHHHHHHHhC--CEEecCC
Q 012481 182 NSNVIRQASLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGL--AEDRKAIMEDLAILTG--GQVLTGG 257 (462)
Q Consensus 182 ~~~~i~~~le~i~~~g~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~--g~~r~~~ledla~~tG--~~i~~~~ 257 (462)
+.+.+.+.|+... ++++.++..-+++.+...+. .++.. .|+.++..-| ++.. ++ +.+++..- +.++-.
T Consensus 76 SL~~va~~Ls~lL--~~~V~fv~d~~g~~~~~~i~--~l~~G-~ilLLEN~RF~~~E~~-~~-~~~a~~LA~l~DvyVN- 147 (401)
T PLN02282 76 SLKPLVPRLSELL--GVEVVMANDCIGEEVEKLVA--ELPEG-GVLLLENVRFYKEEEK-ND-PEFAKKLASLADVYVN- 147 (401)
T ss_pred CHHHHHHHHHHHH--CCCeEECCCCCCHHHHHHHh--cCCCC-CEEEEeccccCccccc-CH-HHHHHHHHHhCcEeee-
Confidence 3445556666654 68888877777777665332 22221 4677777655 4432 22 34444432 445543
Q ss_pred CCCCccCCCCCCceeeeEEEEecceE-EEEcCCCChhhHHHHHHHHHHHhhhcccHHHHHHHhhhcCCeEEEEeccCcHh
Q 012481 258 SGMNSTYFVPLKLGSCKRVIATMDNV-VIIGGSGELVDIQERCEQLRSTIKLSTSDKLKDRLAKLSGGYAVLKVCGHGKA 336 (462)
Q Consensus 258 ~~~~~~~~~~~~LG~a~~v~i~~~~~-~~~~g~~~~~~i~~r~~~l~~~l~~~~s~~l~~Rl~~l~g~~~tI~v~G~t~~ 336 (462)
|-+|.+.+-.-+--.+ .++..+-.-..++.-+..|.+.++... .-.+.+|||+-
T Consensus 148 ----------DAFg~aHR~haS~~gi~~~l~~~~aG~lmekEl~~L~~~l~~p~-------------rP~vaIlGGaK-- 202 (401)
T PLN02282 148 ----------DAFGTAHRAHASTEGVAKYLKPSVAGFLMQKELDYLVGAVANPK-------------KPFAAIVGGSK-- 202 (401)
T ss_pred ----------chhhhhhhcccchhhhhhhcCccccchHHHHHHHHHHHHhcCCC-------------CCeEEEEcCCc--
Confidence 3466666554332211 122101111234444555555553221 23578888853
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--cCCcCChhHHHHHHH
Q 012481 337 EVREKKLKITNALHAVQAAKE--EGIVPGSGVALLYAS 372 (462)
Q Consensus 337 ~l~E~~~~~~DAl~a~k~a~~--~gvVpGGGa~el~~s 372 (462)
+.|-+.++++.++ +.++.|||.++.-+.
T Consensus 203 --------vsdKi~vi~~Ll~kvD~lliGG~ma~tFl~ 232 (401)
T PLN02282 203 --------VSTKIGVIESLLEKVDILLLGGGMIFTFYK 232 (401)
T ss_pred --------HHhHHHHHHHHHHhhhhheeccHHHHHHHH
Confidence 5677777777766 579999999887653
No 62
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=21.52 E-value=2.1e+02 Score=22.84 Aligned_cols=53 Identities=19% Similarity=0.151 Sum_probs=29.5
Q ss_pred HHHHHHcCCCEEEEecCcchhhHhhHHhhccCCCCcEEEEeecCcchhhhhhHHHHHHHhCCE
Q 012481 190 SLPCMMQGQSLLVVAEDVENEVLGDIATDFTCTTEKVCIIKAAGLAEDRKAIMEDLAILTGGQ 252 (462)
Q Consensus 190 le~i~~~g~~lvii~~~i~~~al~~l~~n~~~~~~~i~avk~~~~g~~r~~~ledla~~tG~~ 252 (462)
++.+.+....|||+++|.++.....+..- ....+|-.+..+ ..++|..++|-.
T Consensus 20 ~kai~~gkaklViiA~D~~~~~~~~i~~~--c~~~~Vp~~~~~--------s~~eLG~a~G~~ 72 (82)
T PRK13602 20 VKALKRGSVKEVVVAEDADPRLTEKVEAL--ANEKGVPVSKVD--------SMKKLGKACGIE 72 (82)
T ss_pred HHHHHcCCeeEEEEECCCCHHHHHHHHHH--HHHcCCCEEEEC--------CHHHHHHHHCCC
Confidence 44444444679999999999765443310 001122234333 147788888843
No 63
>PRK09932 glycerate kinase II; Provisional
Probab=20.39 E-value=2.7e+02 Score=29.04 Aligned_cols=37 Identities=24% Similarity=0.259 Sum_probs=28.5
Q ss_pred ccCcHhHHHHHHHHHHHHHHHHHHHHHcC--CcCChhHH
Q 012481 331 CGHGKAEVREKKLKITNALHAVQAAKEEG--IVPGSGVA 367 (462)
Q Consensus 331 ~G~t~~~l~E~~~~~~DAl~a~k~a~~~g--vVpGGGa~ 367 (462)
+|.++..+++.++.++.-.++++...... -+||+|++
T Consensus 212 KGa~~~~v~~Ld~~l~~~a~~~~~~~~~~~~~~pGaGAA 250 (381)
T PRK09932 212 KGATPEMVEELEQGLQNYARVLQQQTEINVCQMAGGGAA 250 (381)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhCccccCCCCCCcc
Confidence 78899999999998888888887654432 46888775
Done!