Query 012482
Match_columns 462
No_of_seqs 445 out of 3524
Neff 8.8
Searched_HMMs 46136
Date Fri Mar 29 03:06:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012482.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012482hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2338 Transcriptional effect 100.0 8.8E-36 1.9E-40 291.1 20.4 372 46-457 116-495 (495)
2 PLN03144 Carbon catabolite rep 100.0 2.2E-34 4.8E-39 296.4 19.1 266 43-319 251-558 (606)
3 COG5239 CCR4 mRNA deadenylase, 99.9 3.8E-25 8.3E-30 208.1 13.6 196 46-250 30-265 (378)
4 TIGR03395 sphingomy sphingomye 99.9 8.2E-23 1.8E-27 196.5 20.7 215 47-296 1-246 (283)
5 PRK11756 exonuclease III; Prov 99.9 2.7E-22 5.8E-27 192.9 17.4 203 47-294 1-236 (268)
6 KOG3873 Sphingomyelinase famil 99.8 2.8E-21 6.1E-26 181.4 9.8 215 45-294 7-257 (422)
7 COG3568 ElsH Metal-dependent h 99.8 1.2E-20 2.6E-25 174.3 12.3 206 46-294 9-228 (259)
8 COG0708 XthA Exonuclease III [ 99.8 3.1E-20 6.7E-25 172.1 14.0 199 47-294 1-229 (261)
9 TIGR00195 exoDNase_III exodeox 99.8 4E-19 8.7E-24 169.5 18.0 199 47-294 1-224 (254)
10 TIGR00633 xth exodeoxyribonucl 99.8 6.1E-19 1.3E-23 168.3 16.9 201 47-294 1-228 (255)
11 KOG0620 Glucose-repressible al 99.8 1.4E-20 3.1E-25 184.4 4.6 197 46-251 19-245 (361)
12 PRK05421 hypothetical protein; 99.8 1.4E-18 2.9E-23 166.3 15.1 152 44-242 41-197 (263)
13 PRK13911 exodeoxyribonuclease 99.8 5.5E-18 1.2E-22 160.1 16.4 198 47-294 1-223 (250)
14 PTZ00297 pantothenate kinase; 99.7 2.5E-16 5.4E-21 178.7 20.7 179 44-249 8-225 (1452)
15 PF03372 Exo_endo_phos: Endonu 99.7 1.9E-16 4.2E-21 148.6 16.5 151 80-242 16-171 (249)
16 smart00476 DNaseIc deoxyribonu 99.7 1.5E-15 3.3E-20 144.2 17.4 166 46-248 17-200 (276)
17 KOG2756 Predicted Mg2+-depende 99.6 2.1E-14 4.5E-19 130.2 15.7 208 45-294 98-311 (349)
18 PRK15251 cytolethal distending 99.5 4E-13 8.7E-18 125.5 14.3 161 45-249 23-206 (271)
19 KOG0031 Myosin regulatory ligh 99.4 2.7E-13 5.9E-18 113.0 6.9 102 308-441 21-122 (171)
20 COG2374 Predicted extracellula 99.4 4.4E-12 9.6E-17 130.5 14.8 257 39-306 456-745 (798)
21 cd05022 S-100A13 S-100A13: S-1 99.4 1.3E-12 2.8E-17 102.5 7.8 73 317-395 3-78 (89)
22 COG5126 FRQ1 Ca2+-binding prot 99.3 9.1E-12 2E-16 107.3 8.6 86 302-393 71-157 (160)
23 cd05027 S-100B S-100B: S-100B 99.3 1.4E-11 3E-16 96.8 8.7 73 317-395 3-82 (88)
24 KOG0027 Calmodulin and related 99.2 1.9E-11 4.1E-16 106.9 8.2 85 302-392 60-149 (151)
25 COG3021 Uncharacterized protei 99.2 4.3E-11 9.4E-16 113.0 10.9 197 43-293 85-282 (309)
26 PF13499 EF-hand_7: EF-hand do 99.2 2.4E-11 5.3E-16 90.4 7.1 62 323-390 1-66 (66)
27 cd05026 S-100Z S-100Z: S-100Z 99.2 7.4E-11 1.6E-15 94.0 8.6 77 317-395 5-84 (93)
28 KOG0037 Ca2+-binding protein, 99.2 4E-11 8.7E-16 106.5 5.6 101 321-426 56-161 (221)
29 cd05025 S-100A1 S-100A1: S-100 99.1 1.9E-10 4.1E-15 91.6 8.7 77 317-395 4-83 (92)
30 cd05029 S-100A6 S-100A6: S-100 99.1 2E-10 4.4E-15 90.2 8.6 74 317-395 5-82 (88)
31 cd05031 S-100A10_like S-100A10 99.1 3.5E-10 7.7E-15 90.4 8.3 70 318-393 4-80 (94)
32 KOG0027 Calmodulin and related 99.1 3E-10 6.4E-15 99.4 7.7 74 318-397 4-77 (151)
33 smart00027 EH Eps15 homology d 99.1 5.3E-10 1.1E-14 89.8 7.7 69 318-394 6-74 (96)
34 COG5126 FRQ1 Ca2+-binding prot 99.0 4.2E-10 9E-15 97.1 6.9 76 316-398 14-89 (160)
35 KOG0028 Ca2+-binding protein ( 99.0 4.5E-10 9.7E-15 94.7 6.3 77 318-400 29-105 (172)
36 KOG0028 Ca2+-binding protein ( 99.0 1.1E-09 2.4E-14 92.4 8.6 84 304-393 87-171 (172)
37 cd05023 S-100A11 S-100A11: S-1 99.0 1.5E-09 3.2E-14 85.4 8.5 78 317-394 4-82 (89)
38 cd00052 EH Eps15 homology doma 99.0 1.4E-09 3E-14 81.0 7.3 62 325-394 2-63 (67)
39 cd00213 S-100 S-100: S-100 dom 99.0 1.8E-09 4E-14 85.2 8.0 75 318-394 4-81 (88)
40 PF13833 EF-hand_8: EF-hand do 98.9 3.5E-09 7.5E-14 75.3 6.5 50 338-392 3-53 (54)
41 KOG0041 Predicted Ca2+-binding 98.8 1.8E-08 3.8E-13 88.0 8.9 91 297-401 82-172 (244)
42 PF14658 EF-hand_9: EF-hand do 98.8 1.6E-08 3.5E-13 73.3 6.4 62 326-392 2-64 (66)
43 KOG0031 Myosin regulatory ligh 98.8 2.6E-08 5.7E-13 83.5 8.5 95 286-392 70-165 (171)
44 cd05030 calgranulins Calgranul 98.8 2.5E-08 5.4E-13 78.5 7.8 72 317-394 3-81 (88)
45 cd00051 EFh EF-hand, calcium b 98.7 4.2E-08 9.1E-13 71.0 7.2 61 324-390 2-62 (63)
46 PTZ00183 centrin; Provisional 98.7 7.2E-08 1.6E-12 84.6 9.2 84 303-392 70-154 (158)
47 cd00252 SPARC_EC SPARC_EC; ext 98.7 5.9E-08 1.3E-12 80.0 7.7 63 318-390 44-106 (116)
48 PTZ00183 centrin; Provisional 98.7 2.5E-08 5.4E-13 87.6 5.1 70 318-393 13-82 (158)
49 smart00128 IPPc Inositol polyp 98.7 3.9E-07 8.4E-12 89.1 13.5 134 92-239 37-193 (310)
50 PTZ00184 calmodulin; Provision 98.6 2.3E-08 5.1E-13 86.7 3.6 71 318-394 7-77 (149)
51 PTZ00184 calmodulin; Provision 98.6 1.7E-07 3.6E-12 81.3 9.0 64 322-391 84-147 (149)
52 KOG0037 Ca2+-binding protein, 98.6 2.7E-07 5.9E-12 82.3 9.6 66 321-392 123-188 (221)
53 cd05024 S-100A10 S-100A10: A s 98.6 4E-07 8.6E-12 71.0 8.7 76 317-395 3-79 (91)
54 KOG0030 Myosin essential light 98.5 3.8E-07 8.1E-12 75.4 8.1 82 302-390 68-149 (152)
55 KOG0034 Ca2+/calmodulin-depend 98.5 1.9E-07 4.1E-12 83.5 6.8 86 303-393 84-176 (187)
56 KOG0377 Protein serine/threoni 98.2 2.6E-06 5.5E-11 83.1 7.5 72 320-393 545-616 (631)
57 KOG0036 Predicted mitochondria 98.2 4.6E-06 9.9E-11 81.0 9.0 70 318-393 78-147 (463)
58 PF00036 EF-hand_1: EF hand; 98.2 1.4E-06 3E-11 52.9 3.4 28 365-392 1-28 (29)
59 KOG0030 Myosin essential light 98.2 2.9E-06 6.2E-11 70.2 6.4 71 319-395 8-80 (152)
60 PF00036 EF-hand_1: EF hand; 98.2 1.8E-06 3.9E-11 52.5 3.5 29 323-352 1-29 (29)
61 KOG0044 Ca2+ sensor (EF-Hand s 98.1 6.8E-06 1.5E-10 73.7 7.4 72 320-392 98-175 (193)
62 PLN02964 phosphatidylserine de 98.1 3.6E-06 7.9E-11 88.6 6.4 66 318-392 139-207 (644)
63 KOG0036 Predicted mitochondria 98.1 5.4E-06 1.2E-10 80.5 6.9 99 318-421 10-114 (463)
64 KOG0038 Ca2+-binding kinase in 98.1 1.7E-05 3.6E-10 66.1 7.7 66 323-393 109-178 (189)
65 PF13405 EF-hand_6: EF-hand do 98.0 5.1E-06 1.1E-10 51.5 3.5 30 323-353 1-31 (31)
66 PLN02964 phosphatidylserine de 98.0 2E-05 4.2E-10 83.2 8.5 65 323-393 180-244 (644)
67 PF12763 EF-hand_4: Cytoskelet 97.8 6.7E-05 1.5E-09 60.6 6.5 65 319-392 7-71 (104)
68 KOG0044 Ca2+ sensor (EF-Hand s 97.6 0.00011 2.4E-09 66.0 5.8 67 322-394 64-130 (193)
69 PF14788 EF-hand_10: EF hand; 97.6 0.00021 4.5E-09 49.0 5.6 49 339-392 1-49 (51)
70 KOG0046 Ca2+-binding actin-bun 97.6 0.00018 3.8E-09 72.1 7.4 75 318-396 15-89 (627)
71 PF13202 EF-hand_5: EF hand; P 97.6 8.5E-05 1.8E-09 43.4 3.0 25 324-349 1-25 (25)
72 PF13202 EF-hand_5: EF hand; P 97.5 0.00012 2.6E-09 42.7 3.1 25 366-390 1-25 (25)
73 PRK12309 transaldolase/EF-hand 97.5 0.00038 8.3E-09 69.7 8.4 53 322-393 334-386 (391)
74 KOG0566 Inositol-1,4,5-triphos 97.4 0.0013 2.9E-08 70.4 11.5 67 182-250 671-740 (1080)
75 PF10591 SPARC_Ca_bdg: Secrete 97.4 0.00013 2.7E-09 60.1 3.0 61 320-388 52-112 (113)
76 KOG4223 Reticulocalbin, calume 97.2 0.00074 1.6E-08 64.2 6.0 65 323-392 164-228 (325)
77 KOG4065 Uncharacterized conser 97.1 0.0014 3.1E-08 52.5 6.2 63 326-389 71-142 (144)
78 PF14529 Exo_endo_phos_2: Endo 97.0 0.00093 2E-08 55.3 4.8 87 186-296 1-99 (119)
79 PF13405 EF-hand_6: EF-hand do 97.0 0.001 2.2E-08 41.0 3.3 28 365-392 1-28 (31)
80 KOG0040 Ca2+-binding actin-bun 96.9 0.002 4.2E-08 71.8 7.3 69 322-396 2253-2328(2399)
81 KOG2643 Ca2+ binding protein, 96.3 0.0031 6.8E-08 62.2 3.4 100 286-393 203-315 (489)
82 KOG4251 Calcium binding protei 96.2 0.011 2.4E-07 53.8 6.0 66 322-391 101-167 (362)
83 smart00054 EFh EF-hand, calciu 96.1 0.0075 1.6E-07 35.3 3.1 29 323-352 1-29 (29)
84 KOG0034 Ca2+/calmodulin-depend 96.1 0.016 3.4E-07 52.1 6.4 73 321-398 65-138 (187)
85 smart00054 EFh EF-hand, calciu 96.1 0.0069 1.5E-07 35.4 2.9 28 365-392 1-28 (29)
86 KOG4223 Reticulocalbin, calume 96.0 0.009 2E-07 57.0 4.5 68 318-391 73-140 (325)
87 KOG1294 Apurinic/apyrimidinic 95.7 0.034 7.3E-07 54.5 7.4 108 184-296 167-308 (335)
88 PF09279 EF-hand_like: Phospho 95.2 0.041 8.8E-07 42.5 4.9 67 323-394 1-71 (83)
89 KOG2243 Ca2+ release channel ( 94.9 0.054 1.2E-06 60.0 6.4 60 325-391 4060-4119(5019)
90 PF13833 EF-hand_8: EF-hand do 94.6 0.048 1E-06 38.1 3.7 32 319-351 22-53 (54)
91 PLN03191 Type I inositol-1,4,5 94.3 0.25 5.5E-06 51.7 9.4 58 182-239 418-481 (621)
92 KOG0377 Protein serine/threoni 94.1 0.21 4.5E-06 49.7 7.9 78 315-394 457-577 (631)
93 KOG2562 Protein phosphatase 2 93.8 0.08 1.7E-06 53.0 4.6 108 276-388 303-420 (493)
94 PTZ00312 inositol-1,4,5-tripho 93.7 0.23 4.9E-06 47.1 7.1 60 182-245 78-146 (356)
95 PF13499 EF-hand_7: EF-hand do 93.4 0.097 2.1E-06 38.2 3.5 30 366-395 2-31 (66)
96 KOG1029 Endocytic adaptor prot 92.7 0.15 3.3E-06 53.9 4.7 63 320-390 193-255 (1118)
97 KOG0042 Glycerol-3-phosphate d 92.0 0.25 5.5E-06 50.8 5.2 69 322-396 593-661 (680)
98 KOG2643 Ca2+ binding protein, 91.8 0.15 3.2E-06 50.8 3.3 54 338-396 403-457 (489)
99 KOG1955 Ral-GTPase effector RA 91.8 0.33 7.2E-06 48.9 5.7 67 318-392 227-293 (737)
100 KOG3555 Ca2+-binding proteogly 91.5 0.23 5E-06 47.8 4.1 64 320-393 248-311 (434)
101 PF05517 p25-alpha: p25-alpha 90.2 1.2 2.6E-05 38.8 7.2 68 325-395 2-72 (154)
102 COG5239 CCR4 mRNA deadenylase, 90.1 0.17 3.6E-06 49.3 1.8 59 185-249 139-197 (378)
103 KOG4666 Predicted phosphate ac 89.8 0.35 7.7E-06 46.3 3.7 65 320-392 294-359 (412)
104 PF08726 EFhand_Ca_insen: Ca2+ 89.5 0.25 5.4E-06 36.6 2.0 54 321-388 5-65 (69)
105 COG5411 Phosphatidylinositol 5 89.5 1.2 2.7E-05 44.6 7.4 55 183-239 164-218 (460)
106 KOG2562 Protein phosphatase 2 89.3 1.1 2.4E-05 45.2 6.9 57 328-393 284-344 (493)
107 KOG1976 Inositol polyphosphate 88.8 0.72 1.6E-05 43.8 4.9 65 182-250 167-241 (391)
108 KOG4578 Uncharacterized conser 87.8 0.51 1.1E-05 45.2 3.3 101 286-394 283-400 (421)
109 KOG0035 Ca2+-binding actin-bun 87.8 1.4 3.1E-05 48.3 7.0 77 318-400 743-824 (890)
110 PF14788 EF-hand_10: EF hand; 87.3 1.9 4.1E-05 29.8 5.0 31 321-352 20-50 (51)
111 cd05024 S-100A10 S-100A10: A s 87.2 1.6 3.4E-05 34.2 5.2 54 299-353 23-78 (91)
112 PF01023 S_100: S-100/ICaBP ty 87.1 1.5 3.3E-05 29.3 4.5 34 318-351 2-36 (44)
113 cd05022 S-100A13 S-100A13: S-1 87.0 1.9 4.2E-05 33.7 5.7 31 322-353 47-77 (89)
114 cd05030 calgranulins Calgranul 86.4 1.3 2.8E-05 34.6 4.4 32 321-353 50-81 (88)
115 KOG3866 DNA-binding protein of 86.3 0.96 2.1E-05 43.0 4.2 70 324-395 246-327 (442)
116 KOG0751 Mitochondrial aspartat 86.3 1.2 2.7E-05 45.1 5.1 92 299-396 87-179 (694)
117 cd00051 EFh EF-hand, calcium b 85.5 1.4 3E-05 30.5 4.0 31 318-349 32-62 (63)
118 cd05026 S-100Z S-100Z: S-100Z 85.3 1.1 2.5E-05 35.2 3.7 33 320-353 51-83 (93)
119 smart00027 EH Eps15 homology d 85.0 1.2 2.6E-05 35.3 3.7 30 364-393 10-39 (96)
120 cd05023 S-100A11 S-100A11: S-1 84.5 2.3 5E-05 33.3 5.0 51 302-353 30-82 (89)
121 cd05031 S-100A10_like S-100A10 83.9 2 4.4E-05 33.8 4.6 34 320-354 49-82 (94)
122 cd00052 EH Eps15 homology doma 83.8 1.3 2.7E-05 32.0 3.2 27 367-393 2-28 (67)
123 cd00252 SPARC_EC SPARC_EC; ext 83.5 1.3 2.9E-05 36.5 3.5 28 321-349 79-106 (116)
124 PF05042 Caleosin: Caleosin re 83.2 5.6 0.00012 35.0 7.2 72 322-394 7-126 (174)
125 cd05029 S-100A6 S-100A6: S-100 82.4 1.9 4E-05 33.7 3.7 33 320-353 49-81 (88)
126 cd05025 S-100A1 S-100A1: S-100 81.3 4.7 0.0001 31.5 5.8 33 320-353 50-82 (92)
127 cd00213 S-100 S-100: S-100 dom 81.0 1.9 4.1E-05 33.4 3.4 29 364-392 8-38 (88)
128 cd05027 S-100B S-100B: S-100B 80.0 1.4 3.1E-05 34.3 2.3 29 364-392 8-38 (88)
129 KOG4251 Calcium binding protei 79.1 3.7 7.9E-05 37.9 4.9 58 325-388 284-341 (362)
130 PF08976 DUF1880: Domain of un 76.9 2 4.4E-05 34.9 2.3 34 360-393 3-36 (118)
131 KOG0169 Phosphoinositide-speci 74.3 5 0.00011 43.1 5.1 63 323-391 137-199 (746)
132 PRK12309 transaldolase/EF-hand 69.1 4.8 0.0001 40.7 3.5 30 359-388 329-358 (391)
133 KOG4666 Predicted phosphate ac 68.6 10 0.00022 36.7 5.2 66 322-392 259-324 (412)
134 KOG0808 Carbon-nitrogen hydrol 68.1 5.7 0.00012 37.0 3.4 27 78-104 98-124 (387)
135 PF12763 EF-hand_4: Cytoskelet 67.6 7.1 0.00015 31.5 3.5 30 322-352 43-72 (104)
136 KOG1029 Endocytic adaptor prot 64.6 18 0.0004 39.0 6.7 58 326-391 17-76 (1118)
137 KOG0038 Ca2+-binding kinase in 64.3 11 0.00025 32.0 4.2 64 326-396 75-140 (189)
138 KOG2871 Uncharacterized conser 64.0 5.3 0.00012 39.2 2.5 66 321-392 308-374 (449)
139 PF09069 EF-hand_3: EF-hand; 63.1 48 0.0011 25.9 7.3 67 323-393 4-76 (90)
140 KOG0041 Predicted Ca2+-binding 63.0 8.8 0.00019 34.5 3.5 31 364-394 99-129 (244)
141 PF14513 DAG_kinase_N: Diacylg 62.5 9 0.00019 32.6 3.3 57 338-401 6-69 (138)
142 KOG0998 Synaptic vesicle prote 58.5 4 8.7E-05 45.6 0.7 67 317-391 278-344 (847)
143 PF14658 EF-hand_9: EF-hand do 58.1 17 0.00036 26.7 3.6 32 320-351 33-64 (66)
144 KOG1707 Predicted Ras related/ 58.0 15 0.00032 38.7 4.6 65 319-391 312-376 (625)
145 PLN02952 phosphoinositide phos 57.2 42 0.00091 35.9 7.9 67 321-392 37-110 (599)
146 PF07499 RuvA_C: RuvA, C-termi 56.9 23 0.0005 23.9 4.0 39 342-389 3-41 (47)
147 COG4103 Uncharacterized protei 53.7 18 0.00038 30.7 3.5 65 326-396 34-98 (148)
148 KOG0751 Mitochondrial aspartat 49.2 44 0.00095 34.4 6.1 78 300-387 161-239 (694)
149 PLN03191 Type I inositol-1,4,5 48.4 26 0.00056 37.2 4.6 17 439-455 575-591 (621)
150 cd07313 terB_like_2 tellurium 46.2 24 0.00051 28.0 3.3 54 338-394 14-67 (104)
151 KOG4347 GTPase-activating prot 43.8 26 0.00056 37.3 3.7 58 322-386 555-612 (671)
152 PLN02230 phosphoinositide phos 43.5 83 0.0018 33.7 7.5 67 322-392 29-102 (598)
153 PLN02222 phosphoinositide phos 42.4 74 0.0016 34.0 7.0 66 322-393 25-91 (581)
154 PRK00523 hypothetical protein; 41.5 64 0.0014 24.0 4.5 42 325-373 27-68 (72)
155 PF03672 UPF0154: Uncharacteri 39.8 74 0.0016 23.1 4.5 31 338-373 30-60 (64)
156 KOG1707 Predicted Ras related/ 38.6 83 0.0018 33.3 6.4 82 319-407 192-279 (625)
157 cd00086 homeodomain Homeodomai 37.2 1.2E+02 0.0025 20.8 5.4 41 319-372 10-50 (59)
158 TIGR02675 tape_meas_nterm tape 35.4 47 0.001 24.9 3.2 43 338-386 29-75 (75)
159 PF00404 Dockerin_1: Dockerin 35.3 39 0.00086 18.7 2.0 16 374-389 1-16 (21)
160 PLN02228 Phosphoinositide phos 35.3 1.3E+02 0.0029 32.0 7.5 66 322-393 24-93 (567)
161 KOG3555 Ca2+-binding proteogly 35.2 51 0.0011 32.3 4.0 80 312-394 201-280 (434)
162 PRK01844 hypothetical protein; 34.5 94 0.002 23.1 4.4 42 325-373 26-67 (72)
163 PF10591 SPARC_Ca_bdg: Secrete 34.3 39 0.00084 27.7 2.8 25 322-347 88-112 (113)
164 KOG3449 60S acidic ribosomal p 33.3 1.1E+02 0.0024 24.7 5.0 58 326-394 5-62 (112)
165 PF07308 DUF1456: Protein of u 32.4 1.5E+02 0.0032 21.9 5.2 25 343-372 17-41 (68)
166 COG3763 Uncharacterized protei 31.7 1.3E+02 0.0028 22.3 4.7 42 325-373 26-67 (71)
167 KOG0565 Inositol polyphosphate 29.1 1.3E+02 0.0029 25.4 5.4 60 182-243 57-124 (145)
168 KOG4004 Matricellular protein 28.3 26 0.00057 31.4 0.8 58 328-392 193-250 (259)
169 PF03979 Sigma70_r1_1: Sigma-7 27.4 54 0.0012 25.0 2.4 33 338-377 20-52 (82)
170 PF11116 DUF2624: Protein of u 27.0 2.8E+02 0.006 21.5 6.1 51 338-393 13-63 (85)
171 PF09279 EF-hand_like: Phospho 26.4 95 0.0021 23.4 3.6 31 365-396 1-31 (83)
172 PF09068 EF-hand_2: EF hand; 26.4 1.4E+02 0.003 25.0 4.8 70 322-391 41-124 (127)
173 PTZ00235 DNA polymerase epsilo 25.3 1.5E+02 0.0033 28.6 5.4 13 228-240 65-77 (291)
174 PF05042 Caleosin: Caleosin re 24.8 1E+02 0.0022 27.3 3.8 69 322-392 96-166 (174)
175 PF08461 HTH_12: Ribonuclease 24.7 88 0.0019 22.8 2.9 35 338-377 12-46 (66)
176 PRK09430 djlA Dna-J like membr 23.8 1.5E+02 0.0033 28.2 5.2 49 338-396 70-124 (267)
177 PLN02223 phosphoinositide phos 23.5 2.3E+02 0.005 30.0 6.7 71 321-393 15-93 (537)
178 PTZ00373 60S Acidic ribosomal 22.7 3.8E+02 0.0083 21.9 6.5 51 327-388 8-58 (112)
179 PLN02952 phosphoinositide phos 22.6 2.1E+02 0.0046 30.8 6.4 56 335-395 13-68 (599)
180 PF12631 GTPase_Cys_C: Catalyt 22.0 1.5E+02 0.0033 21.9 3.9 53 319-373 20-72 (73)
181 PF05099 TerB: Tellurite resis 21.9 39 0.00085 28.3 0.7 52 338-393 38-90 (140)
182 PF09068 EF-hand_2: EF hand; 21.0 1E+02 0.0023 25.7 3.1 28 324-352 99-126 (127)
183 PF00046 Homeobox: Homeobox do 20.8 2.8E+02 0.0061 18.8 5.3 39 320-371 11-49 (57)
No 1
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription]
Probab=100.00 E-value=8.8e-36 Score=291.15 Aligned_cols=372 Identities=31% Similarity=0.372 Sum_probs=241.5
Q ss_pred cEEEEeeccccccccCCccccccccCCcCcCChHHHHHHHHHHHhhCCCcEEEEeccccChhhHHHHHHHHhhcCCCcEE
Q 012482 46 CISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQEFWVGNEELVLMYQERLGNAGYNTF 125 (462)
Q Consensus 46 ~lrV~TyNI~~~~~~~~~~~~~~~~~~~~~~~w~~R~~~i~~~I~~~~~DII~LQEv~~~~~~~~~~l~~~l~~~gy~~~ 125 (462)
.|+||||||+|+.+....... +.+.+...+.|..|.+.|+.+|..++|||+|||||| ..++..++...+...||..+
T Consensus 116 ~ftvmSYNILAQ~l~~~~~r~-~~~~s~~~L~W~~R~~~Ll~EL~~~dpDIlCLQEVq--~d~~~~~~~~~~~~lGy~~~ 192 (495)
T KOG2338|consen 116 DFTVMSYNILAQDLLRDIRRL-YFPESGPALKWLRRSQNLLNELKHYDPDVLCLQEVQ--EDHYPEFWQPLLGKLGYTGF 192 (495)
T ss_pred ceEEEEehHhHHHHHHHhHHh-hccCChhhcchhHHhHHHHHHHhhcCCCeeeehhhh--hhhhHHHHHHHHhhcCceEE
Confidence 799999999999884422211 112467889999999999999999999999999996 56778889999999999999
Q ss_pred EeecCCCCCceeEEEEeCCcceEeeeeEEEccccc------cccceeeeeeeecccccccCCCCcEEEEEEeeccCCCCC
Q 012482 126 SLARTNNRGDGLLTALHRDYFNVLNYRELLFNDFG------DRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPHDS 199 (462)
Q Consensus 126 ~~~~~~~~~~G~ai~~r~sr~~i~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~g~~~~v~ntHL~~~~~~ 199 (462)
+..+++.+.+||||+|+.++|.++....+.+.+.. +.++.++.+.... .. ..++.+.|+||||.|+|
T Consensus 193 ~~r~t~~KthG~ai~w~~~~F~lv~~~~l~y~~~~~~l~n~~NV~lvv~l~f~~---~~--~~sq~ilVanTHLl~np-- 265 (495)
T KOG2338|consen 193 FKRRTGTKTHGVAILWHSAKFKLVNHSELNYFDSGSALANRDNVGLVVSLEFRL---VD--ESSQGILVANTHLLFNP-- 265 (495)
T ss_pred EEeccCCCCceEEEEEecccceecccchhhcccccchhhcccceeEEEEEEecc---cC--cccCceEEEeeeeeecC--
Confidence 99999899999999999999999999888776543 3445555444321 11 13679999999999976
Q ss_pred CchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEeecCCCCCcchhhHHHHhCCCccccccccccCCCCCCCcccccccCc
Q 012482 200 SLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGHVYKFLRSQGFVSSYDVAHQYTDGDADAHKWVSHRNH 279 (462)
Q Consensus 200 ~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~w~~~~~~ 279 (462)
...++|++|...|++.++++..... .+.|+|+|||||+.|++++|.+|++.++......++ ...+.+.|.....
T Consensus 266 ~~~~vrL~Q~~iiL~~~~~~~~~~~-~~~pi~l~GDfNt~p~~~~y~fl~~~~l~~~~~~~~----~~e~s~~~~~~~~- 339 (495)
T KOG2338|consen 266 SRSDVRLAQVYIILAELEKMSKSSK-SHWPIFLCGDFNTEPDSPPYLFLTSGPLIYDGRAAH----TIEDSHRYVFSES- 339 (495)
T ss_pred cccchhhHHHHHHHHHHHHHHhhcc-cCCCeEEecCCCCCCCCCcchhhhcCCceecccccc----ccccccccccccc-
Confidence 5679999999999999999987643 578999999999999999999999888775554443 1133344443321
Q ss_pred CCCcccccceeccCCCCCCChhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhh-ccCCCCCcccHHHHHHHHHHcccCCCC
Q 012482 280 RGNICGVDFIWLRNPNQSRKPLQASWAEAVFSIIKCQLQKASLAENDAFAFF-KADNNGDVITHSAFCEALRQVNLAGLP 358 (462)
Q Consensus 280 ~~~~~~iD~If~s~~~~~~~~~~~~~~~~v~~ii~~~l~~~~~~~~~~F~~~-D~d~~~G~i~~~el~~~l~~lg~~~~~ 358 (462)
+....+.|-- |........+.+.....-.-.++|... |++.. =..+..|+......+++-.++
T Consensus 340 ~~ge~g~d~~---------------~~~~~~s~~k~~~~~~s~~~~e~~t~~g~~~~~-~~~~~~~h~~~~~~~s~~s~g 403 (495)
T KOG2338|consen 340 RLGEEGEDDE---------------EESAAFSRGKGQLSQASIPKPEIFTATGDKNHL-VELTYSEHESLKVNVSLYSHG 403 (495)
T ss_pred ccCcccccch---------------hhhhhhccCccccccccCCCccccccccccchh-HHHHHHHhhhhhcccceeecc
Confidence 2222233211 222222222222211111122344432 22222 223344444322222211122
Q ss_pred CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhccccccccCcccccccccccccccceEecccccCCcccccCcCC
Q 012482 359 YGLSFQETDDLWAQADVDGNGVVNYEEFKRMWNLSCSAQIENNCNDNMEDSKDCSEKEILGFAVKDAFLFPSEVEKGKWP 438 (462)
Q Consensus 359 ~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~g~~~ 438 (462)
..+.. .+...- |.++.|.-+|..=...+.....-.. .+......+.+ ....+++++.-+...+.+++++-||
T Consensus 404 ~~~~~--~~~~~~--~~gep~vt~~~~~~~g~~dyif~~~-~~~~~~~~~~~---~~~~ikl~~~l~ip~~~e~~k~~~p 475 (495)
T KOG2338|consen 404 YGLVH--TENAWL--DRGEPGVTNYALTWKGTLDYIFYSP-GDCKQSNREFE---EDEAIKLKGLLRIPSPQEMWKAGQP 475 (495)
T ss_pred ccccc--hhhccc--cCCCcceecHHhhhccceeeEEecc-Ccccccchhhh---cccceeEEEEecCCCHHHhhccCCC
Confidence 22222 222211 6677788887765544443332211 11111111222 2334556666777788889899999
Q ss_pred CC-CCCCCCCCeeEEeeccc
Q 012482 439 EN-YSLSDHAPLSVVFSPVR 457 (462)
Q Consensus 439 ~~-~~~~~~~~l~~~~~~~~ 457 (462)
.+ +=.|||..|++.|++|.
T Consensus 476 ~~~~~~SDH~aL~~~~~~~~ 495 (495)
T KOG2338|consen 476 PNGRYGSDHIALVAQFSLVK 495 (495)
T ss_pred CCCCCcccceEeeEeeEeeC
Confidence 88 55699999999999873
No 2
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=100.00 E-value=2.2e-34 Score=296.37 Aligned_cols=266 Identities=24% Similarity=0.352 Sum_probs=181.7
Q ss_pred CCCcEEEEeeccccccccCCccccccccCCcCcCChHHHHHHHHHHHhhCCCcEEEEeccccChhhHHHHHHHHhhcCCC
Q 012482 43 GECCISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQEFWVGNEELVLMYQERLGNAGY 122 (462)
Q Consensus 43 ~~~~lrV~TyNI~~~~~~~~~~~~~~~~~~~~~~~w~~R~~~i~~~I~~~~~DII~LQEv~~~~~~~~~~l~~~l~~~gy 122 (462)
...+||||||||+++.|+..+.| +|| +.+.+.|.+|++.|+++|..++|||||||||+ ..++.+++...|...||
T Consensus 251 ~~~~frVmSYNILAd~ya~~dly-~yc--p~~aL~W~yRk~lIl~EI~~~~aDIICLQEV~--~~~~~d~~~p~L~~~GY 325 (606)
T PLN03144 251 SAGTFTVLSYNILSDLYATSDMY-SYC--PPWALSWTYRRQNLLREIVGYRADILCLQEVQ--SDHFEEFFAPELDKHGY 325 (606)
T ss_pred CCCCEEEEEeeeccccccCcccc-cCC--CccccCHHHHHHHHHHHHHhcCCCEEEEeecC--HHHHHHHHHhhhhhcCc
Confidence 35689999999999999987644 688 45789999999999999999999999999994 55677788889999999
Q ss_pred cEEEeecCCC-------CCceeEEEEeCCcceEeeeeEEEccccc-----------------cc-----cceeeeeeeec
Q 012482 123 NTFSLARTNN-------RGDGLLTALHRDYFNVLNYRELLFNDFG-----------------DR-----VAQLVHVESVV 173 (462)
Q Consensus 123 ~~~~~~~~~~-------~~~G~ai~~r~sr~~i~~~~~~~~~~~~-----------------~~-----~~~~~~~~~~~ 173 (462)
.++|..+++. ..+|+|||||++||.+++...+.|+... .| ++.++.++...
T Consensus 326 ~Gv~~~Kt~~~~~~~~~~~DGcAIFyr~drFeLv~~~~ief~~~~lslt~~~~~s~~~~~~l~Rl~kdNVAliv~Le~k~ 405 (606)
T PLN03144 326 QALYKKKTTEVYTGNTYVIDGCATFFRRDRFSLVKKYEVEFNKAAQSLTEALIPSAQKKAALNRLLKDNVALIVVLEAKF 405 (606)
T ss_pred eEEEeCCCCccccccccCCceeEEEEECcceEEEEeeeeeccchhhccCccccccccchhhhhhhccCcEEEEEEEEEec
Confidence 9999877542 4789999999999999999888665321 01 22222222210
Q ss_pred ccccc-cCCCCcEEEEEEeeccCCCCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEeecCCCCCcchhhHHHHhCC
Q 012482 174 PFFQN-QGGGQQEILIVNTHLLFPHDSSLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGHVYKFLRSQG 252 (462)
Q Consensus 174 ~~~~~-~~~~g~~~~v~ntHL~~~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~~~~~l~~~g 252 (462)
..... ..+.++.|+|+||||+|.+ ...++|+.|+..|++.++++... .+.|+|||||||+.|++++|++|.+ |
T Consensus 406 ~~~~~~~~~~~~~l~VaNTHL~~~p--~~~dvRl~Q~~~Ll~~l~~~~~~---~~~PvIlcGDFNS~P~S~vy~lLt~-G 479 (606)
T PLN03144 406 GNQGADNGGKRQLLCVANTHIHANQ--ELKDVKLWQVHTLLKGLEKIAAS---ADIPMLVCGDFNSVPGSAPHCLLAT-G 479 (606)
T ss_pred ccccccCCCCccEEEEEEeeeccCC--ccchhHHHHHHHHHHHHHHHhhc---CCCceEEeccCCCCCCChhhhhhhc-C
Confidence 00000 0113467999999999966 45689999999999999988643 3789999999999999999999954 5
Q ss_pred Ccccc--cccc-cc---C-CC-CCCCcccccccCcC----CCcccccceeccCCCCCCChhhHHHHHHHHHHHHHHHHH
Q 012482 253 FVSSY--DVAH-QY---T-DG-DADAHKWVSHRNHR----GNICGVDFIWLRNPNQSRKPLQASWAEAVFSIIKCQLQK 319 (462)
Q Consensus 253 ~~~~~--~~~~-~~---~-~~-~~~~~~w~~~~~~~----~~~~~iD~If~s~~~~~~~~~~~~~~~~v~~ii~~~l~~ 319 (462)
.++.. +... .+ . .. -.+.....+.+.+. +....+..+--+-...+++|.||||+..|.+++||++..
T Consensus 480 ~v~~~h~d~~~~~~~~~~~~~~l~H~~~L~SAY~~~~~~~g~~~~~~~~~~r~~~~~geP~fTNyt~~F~gtlDYIfys 558 (606)
T PLN03144 480 KVDPLHPDLAVDPLGILRPASKLTHQLPLVSAYSSFARMPGSGSGLEQQRRRMDPATNEPLFTNCTRDFIGTLDYIFYT 558 (606)
T ss_pred CcCCCchhhccCccccccccccccCCCcccchhhhhccccccccchhhhhhccccccCCCCceeecCCcceeEEEEEEc
Confidence 54321 1100 00 0 00 01111222222211 000000000000001257899999999999999998843
No 3
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]
Probab=99.92 E-value=3.8e-25 Score=208.13 Aligned_cols=196 Identities=23% Similarity=0.338 Sum_probs=144.1
Q ss_pred cEEEEeeccccccccCCccccccccCCcCcCChHHHHHHHHHHHhhCCCcEEEEeccccChhhHHHHHHHHhhcCCCcEE
Q 012482 46 CISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQEFWVGNEELVLMYQERLGNAGYNTF 125 (462)
Q Consensus 46 ~lrV~TyNI~~~~~~~~~~~~~~~~~~~~~~~w~~R~~~i~~~I~~~~~DII~LQEv~~~~~~~~~~l~~~l~~~gy~~~ 125 (462)
.|+|||||++++.|+++..|+ .+++.+.|.+|.+.|+++|..++|||+|||||+ ...+.+++++.|...||.+.
T Consensus 30 ~ftimTYN~Laq~y~~r~~y~----~s~~aL~W~~R~~~L~~EL~~Yn~Di~CLQEvd--~~~~~~fw~~~l~~~gY~~i 103 (378)
T COG5239 30 DFTIMTYNVLAQTYATRKMYP----YSGWALKWSYRSRLLLQELLYYNADILCLQEVD--AEDFEDFWKDQLGKLGYDGI 103 (378)
T ss_pred eeEEEehhhhhhhhccccccC----CchhhhhhHHHHHHHHHHHhccCCceeeeehhh--hhHHHHHHHHHhcccccceE
Confidence 699999999999999988874 236789999999999999999999999999996 55778899999999999999
Q ss_pred EeecCCC----------CCceeEEEEeC----CcceEeeeeEEEccccc-------------cccceeeeee--eecccc
Q 012482 126 SLARTNN----------RGDGLLTALHR----DYFNVLNYRELLFNDFG-------------DRVAQLVHVE--SVVPFF 176 (462)
Q Consensus 126 ~~~~~~~----------~~~G~ai~~r~----sr~~i~~~~~~~~~~~~-------------~~~~~~~~~~--~~~~~~ 176 (462)
+.++++. ..+||+||++. ||+.++-.....|.... ++++....+. ..+...
T Consensus 104 f~~k~~k~~~m~~~d~t~~dGc~if~k~~~~~sk~~li~~~~~~f~~p~~~~er~r~t~~~lnri~e~~~~~w~~l~~~l 183 (378)
T COG5239 104 FIPKERKVKWMIDYDTTKVDGCAIFLKRFIDSSKLGLILAVTHLFWHPYGYYERFRQTYILLNRIGEKDNIAWVCLFVGL 183 (378)
T ss_pred EecCCCcccccccccccccceEEEEEEeccccchhhhhhhhhHhhcccceeehhhhHHHHHHHHHhhhhhcchhheeeee
Confidence 9877651 36899999988 55333333222221110 1111111110 001111
Q ss_pred cccCCCCcEEEEEEeeccCCCCCCchhHHHHHHHHHHHHHHHHHhhcC-----------CCCCCEEEeecCCCCCcchhh
Q 012482 177 QNQGGGQQEILIVNTHLLFPHDSSLSVVRLHQVYKILQYLELYQTENK-----------LNHIPIILCGDWNGSKRGHVY 245 (462)
Q Consensus 177 ~~~~~~g~~~~v~ntHL~~~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~-----------~~~~pvIl~GDFN~~p~s~~~ 245 (462)
.. +.+|.++.|+|||++|.| ...++++-|+..+...+++..++.. .+..++.+|||||+...+.+|
T Consensus 184 ~n-~e~gd~~~va~Th~~w~~--~~~dvk~iq~s~l~~~~k~~~~e~~~~d~~~~d~k~~~~~~~l~~gd~ns~~~s~vy 260 (378)
T COG5239 184 FN-KEPGDTPYVANTHLPWDP--KYRDVKLIQCSLLYRELKKVLKEELNDDKEEGDIKSYPEVDILITGDFNSLRASLVY 260 (378)
T ss_pred cc-CCCCCceeEEeccccccC--CCCchheehhhHHHHHHHHHhhhcCCcchhccccccCcccccccCCCccceecceeh
Confidence 11 238999999999999955 5568899999999888887765431 123378999999999999999
Q ss_pred HHHHh
Q 012482 246 KFLRS 250 (462)
Q Consensus 246 ~~l~~ 250 (462)
.+|.+
T Consensus 261 ~~l~~ 265 (378)
T COG5239 261 KFLVT 265 (378)
T ss_pred hhhhh
Confidence 99965
No 4
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=99.91 E-value=8.2e-23 Score=196.55 Aligned_cols=215 Identities=14% Similarity=0.188 Sum_probs=135.4
Q ss_pred EEEEeeccccccccCCccccccccCCcCcCChHHHHHHHHHHHhhCCCcEEEEeccccChhhHHHHHHHHh-hcCCCcEE
Q 012482 47 ISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQEFWVGNEELVLMYQERL-GNAGYNTF 125 (462)
Q Consensus 47 lrV~TyNI~~~~~~~~~~~~~~~~~~~~~~~w~~R~~~i~~~I~~~~~DII~LQEv~~~~~~~~~~l~~~l-~~~gy~~~ 125 (462)
||||||||+...+. ......|..|..+|++.+...+|||||||||+ .......+...| ..++|...
T Consensus 1 lkVmtyNv~~l~~~-----------~~~~~g~~~R~~~i~~~~~~~~~DVV~LQEv~--~~~~~~~l~~~L~~~yp~~~~ 67 (283)
T TIGR03395 1 IKILSHNVYMLSTN-----------LYPNWGQMERADLIASADYIKNQDVVILNEAF--DTSASKRLLDNLREEYPYQTD 67 (283)
T ss_pred CeEEEEEeeeeccc-----------ccCCccHhHHHHHHHHhhcccCCCEEEEeccc--chHHHHHHHHHHHhhCCceEe
Confidence 68999999753211 11234688999999999999999999999995 333344444445 33444332
Q ss_pred EeecC--------------CCCCceeEEEEeCCcceEeeeeEEEcccccc--c--cceeeeeeeecccccccCCCCcEEE
Q 012482 126 SLART--------------NNRGDGLLTALHRDYFNVLNYRELLFNDFGD--R--VAQLVHVESVVPFFQNQGGGQQEIL 187 (462)
Q Consensus 126 ~~~~~--------------~~~~~G~ai~~r~sr~~i~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~g~~~~ 187 (462)
...+. .....|++|+ ||+|++....+.|+.... . ....+.+.+. .+|+.+.
T Consensus 68 ~~g~~~~g~~~~~g~~~~~~~~~~G~~iL---Sr~Pi~~~~~~~f~~~~~~d~~~~kg~l~a~i~--------~~g~~~~ 136 (283)
T TIGR03395 68 VIGRSKKGWDKTLGNYSSSALEDGGVAIV---SKWPIEEKIQYIFNKGCGADNLSNKGFAYVKIN--------KNGKKFH 136 (283)
T ss_pred ecccccccchhccccccccCccCCEEEEE---ECCCccccEEEEccCCCCCccccCCceEEEEEe--------cCCeEEE
Confidence 21111 1235799999 889998887777753221 1 1122222221 1678999
Q ss_pred EEEeeccCCCCC----CchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEeecCCCCCcchhhHHHHhC-CCccccccccc
Q 012482 188 IVNTHLLFPHDS----SLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGHVYKFLRSQ-GFVSSYDVAHQ 262 (462)
Q Consensus 188 v~ntHL~~~~~~----~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~~~~~l~~~-g~~~~~~~~~~ 262 (462)
|+||||.+.... .....|..|+.+|.+.+..... ..+.|+|||||||..|.+..|+.|... +..+ ..
T Consensus 137 v~~THL~~~~~~~~~~~~~~~R~~Q~~~i~~~i~~~~~---~~~~pvIl~GDfN~~~~s~~~~~ml~~l~~~~-----p~ 208 (283)
T TIGR03395 137 VIGTHLQAQDSMCSKLGPASIRANQLNEIQDFIDSKNI---PKDETVLIGGDLNVNKGSNEYHDMFKTLNVSE-----PR 208 (283)
T ss_pred EEEeCCCCCcccccccccHHHHHHHHHHHHHHHhhccC---CCCceEEEEeeCCCCCCCHHHHHHHHHhcccC-----CC
Confidence 999999763211 1257899999999988865321 135689999999999999999877542 2111 01
Q ss_pred cCCCCCCCcccccccCc-------CCCcccccceeccCCCC
Q 012482 263 YTDGDADAHKWVSHRNH-------RGNICGVDFIWLRNPNQ 296 (462)
Q Consensus 263 ~~~~~~~~~~w~~~~~~-------~~~~~~iD~If~s~~~~ 296 (462)
+.+ ..+||-+..|. .....++||||++++..
T Consensus 209 ~~g---~~~T~d~~~N~~a~~~~~~~~~~~lDyvl~~~~~~ 246 (283)
T TIGR03395 209 YVG---VPATWDATTNSIAKYYYPKEEPEYLDYIFVSKSHA 246 (283)
T ss_pred cCC---CCCCcCCCcCchhhhhcCCCCcceEEEEEEECCCC
Confidence 111 23455443221 23346899999997643
No 5
>PRK11756 exonuclease III; Provisional
Probab=99.89 E-value=2.7e-22 Score=192.93 Aligned_cols=203 Identities=18% Similarity=0.208 Sum_probs=128.1
Q ss_pred EEEEeeccccccccCCccccccccCCcCcCChHHHHHHHHHHHhhCCCcEEEEeccccChhhHHHHHHHHhhcCCCcEEE
Q 012482 47 ISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQEFWVGNEELVLMYQERLGNAGYNTFS 126 (462)
Q Consensus 47 lrV~TyNI~~~~~~~~~~~~~~~~~~~~~~~w~~R~~~i~~~I~~~~~DII~LQEv~~~~~~~~~~l~~~l~~~gy~~~~ 126 (462)
+|||||||... ..|...++++|++.+||||||||++.....+. ...+...||.+++
T Consensus 1 mri~T~Nv~g~---------------------~~~~~~i~~~i~~~~pDIi~LQE~~~~~~~~~---~~~~~~~gy~~~~ 56 (268)
T PRK11756 1 MKFVSFNINGL---------------------RARPHQLEAIIEKHQPDVIGLQETKVHDEMFP---LEEVEALGYHVFY 56 (268)
T ss_pred CEEEEEEcCCH---------------------HHHHHHHHHHHHhcCCCEEEEEecccccccCC---HHHHHhcCCEEEE
Confidence 69999999732 23567899999999999999999963221111 1223446887766
Q ss_pred eecCCCCCceeEEEEeCCcceEeeeeEEEcccc-ccccceeeeeeeecccccccCCCCcEEEEEEeeccCCCCC---Cch
Q 012482 127 LARTNNRGDGLLTALHRDYFNVLNYRELLFNDF-GDRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPHDS---SLS 202 (462)
Q Consensus 127 ~~~~~~~~~G~ai~~r~sr~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~ntHL~~~~~~---~~~ 202 (462)
.. .....|+||+ +|+++..... .++.. ....+..+.+.... +++.+.|+|+|+..+... ...
T Consensus 57 ~~--~~~~~Gvail---Sr~p~~~~~~-~~~~~~~~~~~r~l~~~i~~--------~~g~~~v~n~y~P~~~~~~~~~~~ 122 (268)
T PRK11756 57 HG--QKGHYGVALL---SKQTPIAVRK-GFPTDDEEAQRRIIMATIPT--------PNGNLTVINGYFPQGESRDHPTKF 122 (268)
T ss_pred eC--CCCCCEEEEE---ECCChHHeEE-CCCCccccccCCEEEEEEEc--------CCCCEEEEEEEecCCCCCCcchhH
Confidence 43 2345799999 5555554332 22221 11123333333211 334599999999543211 111
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCCCCCEEEeecCCCCCcch--------------------------hhHHHHhCCCccc
Q 012482 203 VVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGH--------------------------VYKFLRSQGFVSS 256 (462)
Q Consensus 203 ~~R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~--------------------------~~~~l~~~g~~~~ 256 (462)
..|.+++..|...+.+... .+.|+|||||||..|.+. .++.|.+.|++|+
T Consensus 123 ~~r~~~~~~l~~~l~~~~~----~~~pvIl~GDfN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~er~~~~~l~~~~l~D~ 198 (268)
T PRK11756 123 PAKRQFYQDLQNYLETELS----PDNPLLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPEEREWLDRLMDWGLVDT 198 (268)
T ss_pred HHHHHHHHHHHHHHHHHhc----cCCCEEEEeecccCCChhhcCCcccChHHhcccCCccCCHHHHHHHHHHHhCCcEee
Confidence 3567788888888877643 267999999999988755 4556667799999
Q ss_pred cccccccCCCCCCCcccccccCcC---CCcccccceeccCC
Q 012482 257 YDVAHQYTDGDADAHKWVSHRNHR---GNICGVDFIWLRNP 294 (462)
Q Consensus 257 ~~~~~~~~~~~~~~~~w~~~~~~~---~~~~~iD~If~s~~ 294 (462)
|...++.. ...+||.+.+... ....||||||++.+
T Consensus 199 ~R~~~p~~---~~~~T~~~~~~~~~~~~~g~RIDyi~~s~~ 236 (268)
T PRK11756 199 FRQLNPDV---NDRFSWFDYRSKGFDDNRGLRIDLILATQP 236 (268)
T ss_pred hhhhCCCC---CCcccCcCCcccccccCCceEEEEEEeCHH
Confidence 98877641 2345776544421 12368999999855
No 6
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms]
Probab=99.85 E-value=2.8e-21 Score=181.35 Aligned_cols=215 Identities=20% Similarity=0.243 Sum_probs=151.1
Q ss_pred CcEEEEeeccccccccCCccccccccCCcCcCChHHHHHHHHHHHhhCCCcEEEEeccccChhhHHHHHHHHhh-cCCCc
Q 012482 45 CCISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQEFWVGNEELVLMYQERLG-NAGYN 123 (462)
Q Consensus 45 ~~lrV~TyNI~~~~~~~~~~~~~~~~~~~~~~~w~~R~~~i~~~I~~~~~DII~LQEv~~~~~~~~~~l~~~l~-~~gy~ 123 (462)
-.|||+|.|+|+..|.++++ ..|...+-+.+.....||+.|||||... + ...+..... .+.|.
T Consensus 7 ~~lriltlN~Wgip~~Sk~R--------------~~Rm~~~g~~l~~E~yDiv~LQEvWs~e-D-~~~L~~~~ss~yPys 70 (422)
T KOG3873|consen 7 LELRILTLNIWGIPYVSKDR--------------RHRMDAIGDELASEKYDIVSLQEVWSQE-D-FEYLQSGCSSVYPYS 70 (422)
T ss_pred heeeeeEeeccccccccchh--------------HHHHHHHhHHHhhcccchhhHHHHHHHH-H-HHHHHHhccccCchH
Confidence 36999999999887665543 3578899999999999999999999322 2 233333222 23444
Q ss_pred EEEeecCCCCCceeEEEEeCCcceEeeeeEEEcccc--c----------cccceeeeeeeecccccccCCCCcEEEEEEe
Q 012482 124 TFSLARTNNRGDGLLTALHRDYFNVLNYRELLFNDF--G----------DRVAQLVHVESVVPFFQNQGGGQQEILIVNT 191 (462)
Q Consensus 124 ~~~~~~~~~~~~G~ai~~r~sr~~i~~~~~~~~~~~--~----------~~~~~~~~~~~~~~~~~~~~~~g~~~~v~nt 191 (462)
.+| .+|..+.|+++| ||+||++.....++-. + .+......+.. +|..+.++||
T Consensus 71 h~F--HSGimGaGL~vf---SK~PI~~t~~~~y~lNG~p~~i~rGDWf~GK~Vgl~~l~~----------~g~~v~~ynt 135 (422)
T KOG3873|consen 71 HYF--HSGIMGAGLCVF---SKHPILETLFHRYSLNGYPHAIHRGDWFGGKGVGLTVLLV----------GGRMVNLYNT 135 (422)
T ss_pred Hhh--hcccccCceEEe---ecCchhhhhhhccccCCccceeeeccccccceeEEEEEee----------CCEEeeeeeh
Confidence 333 456778999999 8999988765544432 2 11112233332 7799999999
Q ss_pred eccCCCCC---CchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEeecCCCCCcchhhHHHHhCCCccccccccccC----
Q 012482 192 HLLFPHDS---SLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGHVYKFLRSQGFVSSYDVAHQYT---- 264 (462)
Q Consensus 192 HL~~~~~~---~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~~~~~l~~~g~~~~~~~~~~~~---- 264 (462)
||+++.+- .+-..|..|+..+.+.|+...+. ..-||+|||||+.|.+-.+++|++.|+.|+|...+...
T Consensus 136 HLHAeY~rq~D~YL~HR~~QAwdlaqfi~~t~q~----~~vVI~~GDLN~~P~dl~~~ll~~a~l~daw~~~h~~q~e~~ 211 (422)
T KOG3873|consen 136 HLHAEYDRQNDEYLCHRVAQAWDLAQFIRATRQN----ADVVILAGDLNMQPQDLGHKLLLSAGLVDAWTSLHLDQCESD 211 (422)
T ss_pred hccccccccCchhhhHHHHHHHHHHHHHHHHhcC----CcEEEEecCCCCCccccceeeeeccchhhhHhhhchhhhcCc
Confidence 99875432 24456999999999999887653 56699999999999999999999999998886555210
Q ss_pred --------------CCCCCCcccccccCcCCC--cccccceeccCC
Q 012482 265 --------------DGDADAHKWVSHRNHRGN--ICGVDFIWLRNP 294 (462)
Q Consensus 265 --------------~~~~~~~~w~~~~~~~~~--~~~iD~If~s~~ 294 (462)
.|+....+|.+....... .+||||+|++..
T Consensus 212 ~~r~s~~~~l~~g~tcd~~~N~y~~aqk~~ddp~~~RiDYvl~k~~ 257 (422)
T KOG3873|consen 212 SFRLSEDKELVEGNTCDSPLNCYTSAQKREDDPLGKRIDYVLVKPG 257 (422)
T ss_pred ccccchhhhhhcCCcccCcchhhhHHHhCCCCccceeeeEEEEcCc
Confidence 123444567653333333 479999999876
No 7
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=99.84 E-value=1.2e-20 Score=174.29 Aligned_cols=206 Identities=16% Similarity=0.168 Sum_probs=125.4
Q ss_pred cEEEEeeccccccccCCccccccccCCcCcCChHHHHHHHHHHHhhCCCcEEEEecccc--C--hhhHHHHHHHHhhcCC
Q 012482 46 CISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQEFWV--G--NEELVLMYQERLGNAG 121 (462)
Q Consensus 46 ~lrV~TyNI~~~~~~~~~~~~~~~~~~~~~~~w~~R~~~i~~~I~~~~~DII~LQEv~~--~--~~~~~~~l~~~l~~~g 121 (462)
.++|+||||..+... ..+..+..++.+.|+...+|||||||++. + ...+..+........+
T Consensus 9 ~~~v~TyNih~~~~~---------------~d~r~~~~r~~~~i~~~~~Div~LQEv~~~~~~~r~~~~~~~~~~~~~~~ 73 (259)
T COG3568 9 RFKVLTYNIHKGFGA---------------FDRRFDLPRIAEVIREVGADIVALQEVDGAFGRHRDGLLDLPHLLGRLGL 73 (259)
T ss_pred eeEEEEEEEEEccCc---------------cCceecHHHHHHHHHhhccCeeeeecccccccccccccchhHHHHHHhcC
Confidence 389999999755311 13445688999999999999999999972 1 1112222211112112
Q ss_pred ----CcEEEee-cCCCCCceeEEEEeCCcceEeeeeEEEcccc---ccccceeeeeeeecccccccCCCCcEEEEEEeec
Q 012482 122 ----YNTFSLA-RTNNRGDGLLTALHRDYFNVLNYRELLFNDF---GDRVAQLVHVESVVPFFQNQGGGQQEILIVNTHL 193 (462)
Q Consensus 122 ----y~~~~~~-~~~~~~~G~ai~~r~sr~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~ntHL 193 (462)
|...... ..+....|++++ |++++.......++.. ..|.+....+.. ..|+++.|+|+||
T Consensus 74 ~~~~~~~~~~~a~~~~~~~GnaiL---S~~pi~~v~~~~lp~~~~~~~Rgal~a~~~~---------~~g~~l~V~~~HL 141 (259)
T COG3568 74 APYWWSGAAFGAVYGEGQHGNAIL---SRLPIRDVENLALPDPTGLEPRGALLAEIEL---------PGGKPLRVINAHL 141 (259)
T ss_pred CccccchhhhhhhcccceeeeEEE---ecCcccchhhccCCCCCCCCCceeEEEEEEc---------CCCCEEEEEEEec
Confidence 2111110 123446799999 5888888888888753 345555544433 1477999999999
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEeecCCCCCcchhhHHHHhCCCccccc-cccccCCC-CCCCc
Q 012482 194 LFPHDSSLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGHVYKFLRSQGFVSSYD-VAHQYTDG-DADAH 271 (462)
Q Consensus 194 ~~~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~~~~~l~~~g~~~~~~-~~~~~~~~-~~~~~ 271 (462)
.+. ...|++|++.|++.+. +.. ..|+|+|||||+.|+++.|+..... ..+... ........ +..-.
T Consensus 142 ~l~-----~~~R~~Q~~~L~~~~~-l~~-----~~p~vl~GDFN~~p~s~~yr~~~~~-~~~~~~~~~~~~~~a~~~~~~ 209 (259)
T COG3568 142 GLS-----EESRLRQAAALLALAG-LPA-----LNPTVLMGDFNNEPGSAEYRLAARS-PLNAQAALTGAFAPAVGRTIR 209 (259)
T ss_pred ccc-----HHHHHHHHHHHHhhcc-Ccc-----cCceEEEccCCCCCCCccceeccCC-chhhccccccccCcccCcccC
Confidence 653 3559999999988221 111 2399999999999999999666332 111010 00000000 01123
Q ss_pred ccccccCcCCCcccccceeccCC
Q 012482 272 KWVSHRNHRGNICGVDFIWLRNP 294 (462)
Q Consensus 272 ~w~~~~~~~~~~~~iD~If~s~~ 294 (462)
+|.+..+ ..+|||||+++.
T Consensus 210 tfps~~p----~lriD~Ifvs~~ 228 (259)
T COG3568 210 TFPSNTP----LLRLDRIFVSKE 228 (259)
T ss_pred CCCCCCc----cccccEEEecCc
Confidence 5555443 348999999985
No 8
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=99.84 E-value=3.1e-20 Score=172.06 Aligned_cols=199 Identities=21% Similarity=0.309 Sum_probs=127.8
Q ss_pred EEEEeeccccccccCCccccccccCCcCcCChHHHHHHHHHHHhhCCCcEEEEeccccChhhHHHHHHHHhhcCCCcEEE
Q 012482 47 ISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQEFWVGNEELVLMYQERLGNAGYNTFS 126 (462)
Q Consensus 47 lrV~TyNI~~~~~~~~~~~~~~~~~~~~~~~w~~R~~~i~~~I~~~~~DII~LQEv~~~~~~~~~~l~~~l~~~gy~~~~ 126 (462)
+||+||||.+- +.|...++++|.+.+||||||||+......+ -...+...||+.++
T Consensus 1 mkI~SwNVNgi---------------------Rar~~~~~~~l~~~~pDVlclQEtK~~~~~f---p~~~~~~~GY~~~~ 56 (261)
T COG0708 1 MKIASWNVNGL---------------------RARLKKLLDWLEEEQPDVLCLQETKAQDEQF---PREELEALGYHHVF 56 (261)
T ss_pred CeeEEEehhhH---------------------HHHHHHHHHHHHHhCCCEEEEEecccCcccC---CHhHHhhCCceEEE
Confidence 58999999643 3467789999999999999999996333222 22344567996555
Q ss_pred eecCCCCCceeEEEEeCCcceEeeeeEEEccc--cccccceeeeeeeecccccccCCCCcEEEEEEeeccCCCC--CCch
Q 012482 127 LARTNNRGDGLLTALHRDYFNVLNYRELLFND--FGDRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPHD--SSLS 202 (462)
Q Consensus 127 ~~~~~~~~~G~ai~~r~sr~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~ntHL~~~~~--~~~~ 202 (462)
.... ....|+||++|.. +. .....++. ..+..++++.+.. .+ +.|+|+++..+.. ...-
T Consensus 57 ~~gq-KgysGVailsr~~---~~-~v~~g~~~~~~~d~e~R~I~a~~----------~~--~~v~~~Y~PnG~~~~~~k~ 119 (261)
T COG0708 57 NHGQ-KGYSGVAILSKKP---PD-DVRRGFPGEEEDDEEGRVIEAEF----------DG--FRVINLYFPNGSSIGLEKF 119 (261)
T ss_pred ecCc-CCcceEEEEEccC---ch-hhhcCCCCCccccccCcEEEEEE----------CC--EEEEEEEcCCCCCCCCcch
Confidence 4433 5678999996554 33 22222332 1244567776665 33 9999998843221 1112
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCCCCCEEEeecCCCCCcc-----------------------hhhHHHHhCCCcccccc
Q 012482 203 VVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRG-----------------------HVYKFLRSQGFVSSYDV 259 (462)
Q Consensus 203 ~~R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s-----------------------~~~~~l~~~g~~~~~~~ 259 (462)
..|+.-...+..++.++.. .+.|+|+|||||..|.. ..++.|.+.||+|++..
T Consensus 120 ~yKl~f~~~l~~~l~~l~~----~~~~~vl~GD~NIap~~iDv~~~~~~~~n~~~~~f~~eeR~~~~~ll~~G~~D~~R~ 195 (261)
T COG0708 120 DYKLRFLDALRNYLEELLK----KGKPVVLCGDFNIAPEEIDVANPKKRWLNEGNSGFLPEERAWFRRLLNAGFVDTFRL 195 (261)
T ss_pred HHHHHHHHHHHHHHHHHhh----cCCCEEEecccccCCchhcccCchhhhhcCCCCCCCHHHHHHHHHHHHcchhhhhHh
Confidence 2344444555555555554 46899999999987641 12445557799999988
Q ss_pred ccccCCCCCCCcccccccCcCC---CcccccceeccCC
Q 012482 260 AHQYTDGDADAHKWVSHRNHRG---NICGVDFIWLRNP 294 (462)
Q Consensus 260 ~~~~~~~~~~~~~w~~~~~~~~---~~~~iD~If~s~~ 294 (462)
.++. ...+||.+++.... .-.|||||++|..
T Consensus 196 ~~p~----~~~YTwW~YR~~~~~~n~G~RID~~l~S~~ 229 (261)
T COG0708 196 FHPE----PEKYTWWDYRANAARRNRGWRIDYILVSPA 229 (261)
T ss_pred hCCC----CCcccccccccchhhhcCceeEEEEEeCHH
Confidence 7654 33378988765311 2257999999855
No 9
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=99.82 E-value=4e-19 Score=169.49 Aligned_cols=199 Identities=21% Similarity=0.320 Sum_probs=124.0
Q ss_pred EEEEeeccccccccCCccccccccCCcCcCChHHHHHHHHHHHhhCCCcEEEEeccccChhhHHHHHHHHhhcCCCcEEE
Q 012482 47 ISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQEFWVGNEELVLMYQERLGNAGYNTFS 126 (462)
Q Consensus 47 lrV~TyNI~~~~~~~~~~~~~~~~~~~~~~~w~~R~~~i~~~I~~~~~DII~LQEv~~~~~~~~~~l~~~l~~~gy~~~~ 126 (462)
+||+||||.... .+...++++|+..+||||||||+.... .......+...||..++
T Consensus 1 mri~t~Ni~g~~---------------------~~~~~~~~~l~~~~~DIi~LQE~~~~~---~~~~~~~~~~~g~~~~~ 56 (254)
T TIGR00195 1 MKIISWNVNGLR---------------------ARLHKGLAWLKENQPDVLCLQETKVQD---EQFPLEPFHKEGYHVFF 56 (254)
T ss_pred CEEEEEEcCcHH---------------------HhHHHHHHHHHhcCCCEEEEEecccch---hhCCHHHhhcCCcEEEE
Confidence 699999997431 234558999999999999999995221 11222333456887766
Q ss_pred eecCCCCCceeEEEEeCCcceEeeeeEEEccccccccceeeeeeeecccccccCCCCcEEEEEEeeccCCC--CCCchhH
Q 012482 127 LARTNNRGDGLLTALHRDYFNVLNYRELLFNDFGDRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPH--DSSLSVV 204 (462)
Q Consensus 127 ~~~~~~~~~G~ai~~r~sr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~ntHL~~~~--~~~~~~~ 204 (462)
... ....|+||++|...+.+.. .+.... .+..++++.+.. ..+.|+|||+.... .......
T Consensus 57 ~~~--~g~~Gvailsr~~~~~~~~--~~~~~~-~~~~~r~i~~~~------------~~~~l~~~~~p~~~~~~~~~~~~ 119 (254)
T TIGR00195 57 SGQ--KGYSGVAIFSKEEPLSVRR--GFGVEE-EDAEGRIIMAEF------------DSFLVINGYFPNGSRDDSEKLPY 119 (254)
T ss_pred ecC--CCcceEEEEEcCCcceEEE--CCCCcc-cccCCCEEEEEE------------CCEEEEEEEccCCCCCCCccHHH
Confidence 543 3456899997754333211 111111 112333433332 24889999995421 1112234
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCEEEeecCCCCCcc--------------------hhhHHHHhCCCccccccccccC
Q 012482 205 RLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRG--------------------HVYKFLRSQGFVSSYDVAHQYT 264 (462)
Q Consensus 205 R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s--------------------~~~~~l~~~g~~~~~~~~~~~~ 264 (462)
|..+...|.+.+.++.. .+.|+|+|||||..|.+ ..++.+.+.|+.|+|...++.
T Consensus 120 r~~~~~~l~~~~~~~~~----~~~pvIi~GDfN~~~~~~d~~~~~~~~~~~~~~~~e~~~~~~l~~~~l~D~~r~~~~~- 194 (254)
T TIGR00195 120 KLQWLEALQNYLEKLVD----KDKPVLICGDMNIAPTEIDLHSPDENRNHTGFLPEEREWLDRLLEAGLVDTFRKFNPD- 194 (254)
T ss_pred HHHHHHHHHHHHHHHHh----cCCcEEEEeecccCCChhhccChhhcCCCcCcChHHHHHHHHHHHcCCEeeecccCCC-
Confidence 66777777777776643 25699999999999865 256767677999998766553
Q ss_pred CCCCCCcccccccCc---CCCcccccceeccCC
Q 012482 265 DGDADAHKWVSHRNH---RGNICGVDFIWLRNP 294 (462)
Q Consensus 265 ~~~~~~~~w~~~~~~---~~~~~~iD~If~s~~ 294 (462)
...+||.+.... .....||||||++..
T Consensus 195 ---~~~~T~~~~~~~~~~~~~g~RID~i~~s~~ 224 (254)
T TIGR00195 195 ---EGAYSWWDYRTKARDRNRGWRIDYFLVSEP 224 (254)
T ss_pred ---CCCCcccCCcCCccccCCceEEEEEEECHH
Confidence 234677764432 122358999999754
No 10
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.81 E-value=6.1e-19 Score=168.28 Aligned_cols=201 Identities=22% Similarity=0.324 Sum_probs=120.1
Q ss_pred EEEEeeccccccccCCccccccccCCcCcCChHHHHHHH-HHHHhhCCCcEEEEeccccChhhHHHHHHHHhhcCCCcEE
Q 012482 47 ISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTI-LDWLICERSSVICLQEFWVGNEELVLMYQERLGNAGYNTF 125 (462)
Q Consensus 47 lrV~TyNI~~~~~~~~~~~~~~~~~~~~~~~w~~R~~~i-~~~I~~~~~DII~LQEv~~~~~~~~~~l~~~l~~~gy~~~ 125 (462)
|||+||||.... .|.+.+ +++|+..+||||||||++... .......+...||..+
T Consensus 1 lri~t~Nv~g~~---------------------~~~~~~~~~~l~~~~~DIv~LQE~~~~~---~~~~~~~~~~~g~~~~ 56 (255)
T TIGR00633 1 MKIISWNVNGLR---------------------ARLHKLFLDWLKEEQPDVLCLQETKVAD---EQFPAELFEELGYHVF 56 (255)
T ss_pred CEEEEEecccHH---------------------HHhhccHHHHHHhcCCCEEEEEeccCch---hhCCHhHhccCCceEE
Confidence 699999997442 134455 999999999999999996221 1112223345688877
Q ss_pred EeecCCCCCceeEEEEeCCcceEeeeeEEEccc-cccccceeeeeeeecccccccCCCCcEEEEEEeeccCCCCC--Cch
Q 012482 126 SLARTNNRGDGLLTALHRDYFNVLNYRELLFND-FGDRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPHDS--SLS 202 (462)
Q Consensus 126 ~~~~~~~~~~G~ai~~r~sr~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~ntHL~~~~~~--~~~ 202 (462)
+.........|+||++|.. +..... .+.. ..+..++.+.+. .+.+.|+++|+...... ...
T Consensus 57 ~~~~~~~~~~G~ailsr~~---~~~~~~-~~~~~~~~~~~r~l~~~------------~~~~~i~~vy~p~~~~~~~~~~ 120 (255)
T TIGR00633 57 FHGAKSKGYSGVAILSKVE---PLDVRY-GFGGEEHDEEGRVITAE------------FDGFTVVNVYVPNGGSRGLERL 120 (255)
T ss_pred EeecccCCcceEEEEEcCC---cceEEE-CCCCCcccCCCcEEEEE------------ECCEEEEEEEccCCCCCCchhH
Confidence 7654433457999996543 333221 1111 112222333222 24689999999543211 112
Q ss_pred hHHHHHHHHHHHHHHHHHhhcCCCCCCEEEeecCCCCCcc--------------------hhhHHHHhCCCccccccccc
Q 012482 203 VVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRG--------------------HVYKFLRSQGFVSSYDVAHQ 262 (462)
Q Consensus 203 ~~R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s--------------------~~~~~l~~~g~~~~~~~~~~ 262 (462)
..|..+...+.+.+.+... .+.|+|+|||||+.+.. ..++.+.+.|+.|.|...++
T Consensus 121 ~~r~~~~~~l~~~~~~~~~----~~~~~Il~GDFN~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 196 (255)
T TIGR00633 121 EYKLQFWDALFQYYEKELD----AGKPVIICGDMNVAHTEIDLGNPKENKGNAGFTPEEREWFDELLEAGLVDTFRHFNP 196 (255)
T ss_pred HHHHHHHHHHHHHHHHHHh----cCCcEEEEeecccCCChHHccChhhcCCCCCcCHHHHHHHHHHHHcCCEecchhhCC
Confidence 3466677666666554432 25699999999998742 24666666889998876654
Q ss_pred cCCCCCCCcccccccCc---CCCcccccceeccCC
Q 012482 263 YTDGDADAHKWVSHRNH---RGNICGVDFIWLRNP 294 (462)
Q Consensus 263 ~~~~~~~~~~w~~~~~~---~~~~~~iD~If~s~~ 294 (462)
.. ...+||...... .....+|||||++..
T Consensus 197 ~~---~~~~T~~~~~~~~~~~~~~~rID~i~~s~~ 228 (255)
T TIGR00633 197 DT---EGAYTWWDYRSGARDRNRGWRIDYFLVSEP 228 (255)
T ss_pred CC---CCcCcCcCCccCccccCCceEEEEEEECHH
Confidence 31 124577654421 112358999999753
No 11
>KOG0620 consensus Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 and related proteins [Transcription]
Probab=99.81 E-value=1.4e-20 Score=184.37 Aligned_cols=197 Identities=22% Similarity=0.390 Sum_probs=140.2
Q ss_pred cEEEEeeccccccccCCccccccccCCcCcCChHHHHHHHHHHHhhCCCcEEEEeccccChhhHHHHHHHHhhcCCCcEE
Q 012482 46 CISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQEFWVGNEELVLMYQERLGNAGYNTF 125 (462)
Q Consensus 46 ~lrV~TyNI~~~~~~~~~~~~~~~~~~~~~~~w~~R~~~i~~~I~~~~~DII~LQEv~~~~~~~~~~l~~~l~~~gy~~~ 125 (462)
+++|+||||+++.|.....+. || ......|.+|+..+++.|..++|||+||||| ..+.+++...+...||.+.
T Consensus 19 ~~~v~s~n~l~~~~~~~~~~~-~~--~~~~~~w~~r~~~~~~ei~~~~ad~icLqev----~~~~~~~~p~l~~~gY~g~ 91 (361)
T KOG0620|consen 19 TFTVLSYNILSQLYATSKLYM-YC--PSWALSWEYRRQLLLEEILNYNADILCLQEV----DRYHDFFSPELEASGYSGI 91 (361)
T ss_pred eEEeechhhhhhhhcccCCCc-cc--chhhccHHHHHHHHHHHHhCCCcceeecchh----hHHHHHccchhhhcCCcce
Confidence 899999999999888776653 66 3456889999999999999999999999999 3667888888888899999
Q ss_pred EeecC------CCCCceeEEEEeCCcceEeeeeEEEccccccc-----cc---eeeeeeeecc-cccccCCCCcEEE---
Q 012482 126 SLART------NNRGDGLLTALHRDYFNVLNYRELLFNDFGDR-----VA---QLVHVESVVP-FFQNQGGGQQEIL--- 187 (462)
Q Consensus 126 ~~~~~------~~~~~G~ai~~r~sr~~i~~~~~~~~~~~~~~-----~~---~~~~~~~~~~-~~~~~~~~g~~~~--- 187 (462)
+.+++ ....+|||||++.++|.++....+.++..... .. .......... +..+....+..+.
T Consensus 92 ~~~k~~~~~~~~~~~dGcaiffk~s~f~li~~~~i~~n~~~~~~~~~~~~~~~~~~~~d~~~~~l~~L~~~~~~~~~~~~ 171 (361)
T KOG0620|consen 92 FIEKTRMGEVELEKIDGCAIFFKPSLFQLIHSSAIELNQLALSRLPPNIAQLNRLTTLDNSGNKLVSLKAELGNMVSLPH 171 (361)
T ss_pred eecccccchhhcccCceeeeeecchHHhhhhhhhhhhHHHHHhhcchhHHHHHhhhccccccchhhhhhhhcCCceeecc
Confidence 98865 45589999999999999988777766543310 00 0000000000 1111111222333
Q ss_pred -EEEeeccCCCCCCchhHHHHHHHHHHHHHH----HHHh----h---cCCCCCCEEEeecCCCCCcchhhHHHHhC
Q 012482 188 -IVNTHLLFPHDSSLSVVRLHQVYKILQYLE----LYQT----E---NKLNHIPIILCGDWNGSKRGHVYKFLRSQ 251 (462)
Q Consensus 188 -v~ntHL~~~~~~~~~~~R~~Q~~~l~~~l~----~~~~----~---~~~~~~pvIl~GDFN~~p~s~~~~~l~~~ 251 (462)
++|+|+.|.+ ....+++.|+..++..+. +..+ . ......|+++|||||+.|.++.|.++...
T Consensus 172 ~~~n~h~~~~~--~~~~vkl~qv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~gdfNs~p~~~v~~~~~~~ 245 (361)
T KOG0620|consen 172 LLLNTHILWDL--PYEDVKLFQVLTLLLELAPLSPEILKIYREGNLATRIASFPLLLCGDFNSTPLSPVYALLASG 245 (361)
T ss_pred ccccceeccCC--CccchHHHHHHHHhhcccccchhhhhhhccccccccccccceeeeccccCCCCccceeecccC
Confidence 4789998844 567889999988877632 1111 0 11345899999999999999999998543
No 12
>PRK05421 hypothetical protein; Provisional
Probab=99.79 E-value=1.4e-18 Score=166.28 Aligned_cols=152 Identities=18% Similarity=0.089 Sum_probs=91.0
Q ss_pred CCcEEEEeeccccccccCCccccccccCCcCcCChHHHHHHHHHHHhhCCCcEEEEeccccChhhHHHHHHHHhhcCCCc
Q 012482 44 ECCISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQEFWVGNEELVLMYQERLGNAGYN 123 (462)
Q Consensus 44 ~~~lrV~TyNI~~~~~~~~~~~~~~~~~~~~~~~w~~R~~~i~~~I~~~~~DII~LQEv~~~~~~~~~~l~~~l~~~gy~ 123 (462)
+++||||||||+..... . ....++.| ..+|||||||||+... .. ...+...++.
T Consensus 41 ~~~lri~t~NI~~~~~~----------------~----~~~~l~~l-~~~~DiI~LQEv~~~~-~~----~~~~~~~~~~ 94 (263)
T PRK05421 41 EERLRLLVWNIYKQQRA----------------G----WLSVLKNL-GKDADLVLLQEAQTTP-EL----VQFATANYLA 94 (263)
T ss_pred CCceeEEEEEccccccc----------------c----HHHHHHHh-ccCCCEEEEEecccCc-ch----HHHhhcccch
Confidence 46899999999865311 1 23444555 8899999999996222 11 1222223343
Q ss_pred EEEe--ecCCCCCceeEEEEeCCcceEeeeeEEEccccc---cccceeeeeeeecccccccCCCCcEEEEEEeeccCCCC
Q 012482 124 TFSL--ARTNNRGDGLLTALHRDYFNVLNYRELLFNDFG---DRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPHD 198 (462)
Q Consensus 124 ~~~~--~~~~~~~~G~ai~~r~sr~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~v~ntHL~~~~~ 198 (462)
+.+. ........|+||+ ||+|+.....+...... .+......+.. .+|+.+.|+||||.+..
T Consensus 95 ~~~~~~~~~~~~~~GvaiL---SR~pi~~~~~~~~~~~~~~~~r~~l~a~~~~---------~~g~~l~v~ntHl~~~~- 161 (263)
T PRK05421 95 ADQAPAFVLPQHPSGVMTL---SKAHPVYCCPLREREPWLRLPKSALITEYPL---------PNGRTLLVVNIHAINFS- 161 (263)
T ss_pred HHhccccccCCCccceeEe---eecccceeeccCCCCccccCcceeEEEEEEe---------CCCCEEEEEEECccccC-
Confidence 3222 1123346799999 77888765544211110 12222222221 15568999999995421
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEeecCCCCCcc
Q 012482 199 SSLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRG 242 (462)
Q Consensus 199 ~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s 242 (462)
.....|..|+..+.+.+... ..|+|||||||+.+..
T Consensus 162 -~~~~~r~~q~~~l~~~~~~~-------~~p~Il~GDFN~~~~~ 197 (263)
T PRK05421 162 -LGVDVYSKQLEPIGDQIAHH-------SGPVILAGDFNTWSRK 197 (263)
T ss_pred -cChHHHHHHHHHHHHHHHhC-------CCCEEEEcccccCccc
Confidence 12356888988888877542 4599999999997643
No 13
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=99.78 E-value=5.5e-18 Score=160.07 Aligned_cols=198 Identities=18% Similarity=0.243 Sum_probs=119.7
Q ss_pred EEEEeeccccccccCCccccccccCCcCcCChHHHH-HHHHHHHhhCCCcEEEEeccccChhhHHHHHHHHhhcCCCcEE
Q 012482 47 ISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRN-QTILDWLICERSSVICLQEFWVGNEELVLMYQERLGNAGYNTF 125 (462)
Q Consensus 47 lrV~TyNI~~~~~~~~~~~~~~~~~~~~~~~w~~R~-~~i~~~I~~~~~DII~LQEv~~~~~~~~~~l~~~l~~~gy~~~ 125 (462)
+||+||||..-. .|. +.+.++|.+.+||||||||+......+ .+...||..+
T Consensus 1 mki~swNVNgir---------------------~~~~~~~~~~l~~~~~DIiclQEtK~~~~~~------~~~~~gY~~~ 53 (250)
T PRK13911 1 MKLISWNVNGLR---------------------ACMTKGFMDFFNSVDADVFCIQESKMQQEQN------TFEFKGYFDF 53 (250)
T ss_pred CEEEEEEeCChh---------------------HhhhhhHHHHHHhcCCCEEEEEeeccccccc------ccccCCceEE
Confidence 589999996442 223 358899999999999999996333221 1334589766
Q ss_pred EeecCCCCCceeEEEEeCCcceEeeeeEEEccc-cccccceeeeeeeecccccccCCCCcEEEEEEeeccCCCCCCchhH
Q 012482 126 SLARTNNRGDGLLTALHRDYFNVLNYRELLFND-FGDRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPHDSSLSVV 204 (462)
Q Consensus 126 ~~~~~~~~~~G~ai~~r~sr~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~ntHL~~~~~~~~~~~ 204 (462)
+.........|+||++|.....+. ..+.. ..+..++.+.... ..+.|+|+++.. +.....
T Consensus 54 ~~~~~~kgy~GVAi~~k~~~~~v~----~~~~~~~~d~eGR~I~~~~------------~~~~l~nvY~Pn---~~~~~~ 114 (250)
T PRK13911 54 WNCAIKKGYSGVVTFTKKEPLSVS----YGINIEEHDKEGRVITCEF------------ESFYLVNVYTPN---SQQALS 114 (250)
T ss_pred EEecccCccceEEEEEcCCchheE----EcCCCCcccccCCEEEEEE------------CCEEEEEEEecC---CCCCCc
Confidence 643334456899999876532221 12221 1133456655543 359999999843 222333
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCEEEeecCCCCCcc--------------------hhhHHHHhCCCccccccccccC
Q 012482 205 RLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRG--------------------HVYKFLRSQGFVSSYDVAHQYT 264 (462)
Q Consensus 205 R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s--------------------~~~~~l~~~g~~~~~~~~~~~~ 264 (462)
|..+-..+...+.++.... ..+.|+|+|||||..+.. ..++.+.+.|++|+|...++..
T Consensus 115 r~~~K~~~~~~~~~~l~~l-~~~~~~Ii~GD~Nva~~~~D~~~~~~~~~~~gf~~~er~~f~~~l~~gl~D~~R~~~p~~ 193 (250)
T PRK13911 115 RLSYRMSWEVEFKKFLKAL-ELKKPVIVCGDLNVAHNEIDLENPKTNRKNAGFSDEERGKFSELLNAGFIDTFRYFYPNK 193 (250)
T ss_pred chHHHHHHHHHHHHHHHhc-ccCCCEEEEccccCCCChhhccChhhcCCCCCcCHHHHHHHHHHHhcCCeehhhhhCCCC
Confidence 5444434334333333322 135699999999987631 1244555668999888766531
Q ss_pred CCCCCCcccccccC---cCCCcccccceeccCC
Q 012482 265 DGDADAHKWVSHRN---HRGNICGVDFIWLRNP 294 (462)
Q Consensus 265 ~~~~~~~~w~~~~~---~~~~~~~iD~If~s~~ 294 (462)
...+||.+.+. ......||||||++..
T Consensus 194 ---~~~yTww~~~~~~~~~n~g~RIDyilvs~~ 223 (250)
T PRK13911 194 ---EKAYTWWSYMQQARDKNIGWRIDYFLCSNP 223 (250)
T ss_pred ---CCCCccCCCcCCccccCCcceEEEEEEChH
Confidence 23478876542 1222358999999865
No 14
>PTZ00297 pantothenate kinase; Provisional
Probab=99.72 E-value=2.5e-16 Score=178.67 Aligned_cols=179 Identities=20% Similarity=0.295 Sum_probs=110.4
Q ss_pred CCcEEEEeeccccccccCCccccccccCCcCcCChHHHHHHHHHHHhhC-CCcEEEEeccccCh---------hhHHHHH
Q 012482 44 ECCISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICE-RSSVICLQEFWVGN---------EELVLMY 113 (462)
Q Consensus 44 ~~~lrV~TyNI~~~~~~~~~~~~~~~~~~~~~~~w~~R~~~i~~~I~~~-~~DII~LQEv~~~~---------~~~~~~l 113 (462)
...||||||||+... +.| ..| ...+|...|+.. +|||||||||.... ......+
T Consensus 8 ~~~l~VlTyNv~~~~--------~~~------~~~--~~~ri~~~i~~l~~~DIv~lQEvf~~~~~~~~~~~~~~~~~~~ 71 (1452)
T PTZ00297 8 CAQARVLSYNFNILP--------RGC------GGF--QHERIETFLASVDAYDVVLLQEVYAASVLPYFLQKQLCFQKML 71 (1452)
T ss_pred CCceEEEEEEccccC--------CCc------ccc--cHHHHHHHHHhccCCCEEEEecccccccccccccccchhhHHH
Confidence 457999999996331 001 112 146677788884 78999999995211 0123445
Q ss_pred HHHhhcCCCcEEEeecCCC----------CCceeEEEEeCCcceEeeeeEEEccccc------cccceeeeeeeeccccc
Q 012482 114 QERLGNAGYNTFSLARTNN----------RGDGLLTALHRDYFNVLNYRELLFNDFG------DRVAQLVHVESVVPFFQ 177 (462)
Q Consensus 114 ~~~l~~~gy~~~~~~~~~~----------~~~G~ai~~r~sr~~i~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 177 (462)
.+.+...||.++...+... ...|+||+ ||||++....+.++... .|....+.+.. +.
T Consensus 72 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~AIL---SR~PI~~~~~~~l~~~~~~~~~~~RG~L~a~I~v----p~ 144 (1452)
T PTZ00297 72 VDELKARGFHHYVISKQPSYLTMLRYNVCSDNGLIIA---SRFPIWQRGSYTFRNHERGEQSVRRGCLFAEVEV----PL 144 (1452)
T ss_pred HHHHHhcCCceeEeecCccccccccCccccCCEEEEE---ECCChhhceeeecCcccccccccccceEEEEEEc----cc
Confidence 6666677887655433221 46799999 99999999999887532 12222222221 00
Q ss_pred ccCCCCcEEEEEEeeccCCCCCCchhHHHHHHHHHHHHHHHHHhh----c-CCCCCCEEEeecCCCC--------Ccchh
Q 012482 178 NQGGGQQEILIVNTHLLFPHDSSLSVVRLHQVYKILQYLELYQTE----N-KLNHIPIILCGDWNGS--------KRGHV 244 (462)
Q Consensus 178 ~~~~~g~~~~v~ntHL~~~~~~~~~~~R~~Q~~~l~~~l~~~~~~----~-~~~~~pvIl~GDFN~~--------p~s~~ 244 (462)
..+.++.++|+||||.+.... ..|.+|+.++.+.++..... . .....|+|||||||.. +.++.
T Consensus 145 -~~g~~~~v~v~~tHL~~~~~~---~~R~~Q~~ql~~~i~~~i~~~~~~~~~~~~~PvILaGDFN~~~~~~~~~~~~s~e 220 (1452)
T PTZ00297 145 -AEGGSQRIVFFNVHLRQEDSL---PSTSSQVQETRRFVESVIANVYEQNNDGAEIPFVIAGDFNINGIDPHNGGHPTKR 220 (1452)
T ss_pred -cCCCCceEEEEEeCCCCCCCc---chHHHHHHHHHHHHHHhhhhhcccccCCCCCCEEEEeeCCCccccccccCCccHH
Confidence 001235899999999764332 45888888888877652211 1 1135699999999965 24466
Q ss_pred hHHHH
Q 012482 245 YKFLR 249 (462)
Q Consensus 245 ~~~l~ 249 (462)
|+.|.
T Consensus 221 ~~~ml 225 (1452)
T PTZ00297 221 FQELL 225 (1452)
T ss_pred HHHHH
Confidence 75554
No 15
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=99.72 E-value=1.9e-16 Score=148.58 Aligned_cols=151 Identities=21% Similarity=0.260 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhhCCCcEEEEeccccChhhHHHHHHHHhhcCCC-cEEEeecCCC----CCceeEEEEeCCcceEeeeeEE
Q 012482 80 NRNQTILDWLICERSSVICLQEFWVGNEELVLMYQERLGNAGY-NTFSLARTNN----RGDGLLTALHRDYFNVLNYREL 154 (462)
Q Consensus 80 ~R~~~i~~~I~~~~~DII~LQEv~~~~~~~~~~l~~~l~~~gy-~~~~~~~~~~----~~~G~ai~~r~sr~~i~~~~~~ 154 (462)
.+.+.|.++|...+||||||||++ .......+...+....+ .......... ...|++|++|.+..........
T Consensus 16 ~~~~~i~~~i~~~~~Dii~LQEv~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~r~~~~~~~~~~~~ 93 (249)
T PF03372_consen 16 RKRREIAQWIAELDPDIIALQEVR--NDDLSELLEEQLRGYLGYYGSFWPGNSPPSDAGGYGVAILSRSPIFSSVSYVFS 93 (249)
T ss_dssp HHHHHHHHHHHHHT-SEEEEEEEE--SHHHHHHHHHHHHTCTTHEEEEEETSSSTTCSSSEEEEEEESSCCCEEEEEEEE
T ss_pred hHHHHHHHHHHhcCCCEEEEecch--hhhhhhhhhhhcccccccccceeccccccccccCceEEEEEccccccccccccc
Confidence 345569999999999999999995 22344555555554443 3333222211 3579999987764333333222
Q ss_pred EccccccccceeeeeeeecccccccCCCCcEEEEEEeeccCCCCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEee
Q 012482 155 LFNDFGDRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPHDSSLSVVRLHQVYKILQYLELYQTENKLNHIPIILCG 234 (462)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~ntHL~~~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~G 234 (462)
......................+. .++.|.|+++|+.+ ....|..|...+++.+....... +..|+||||
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~i~v~~~H~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iv~G 163 (249)
T PF03372_consen 94 LFSKPGIRIFRRSSKSKGIVPVSI---NGKPITVVNVHLPS-----SNDERQEQWRELLARIQKIYADN--PNEPVIVMG 163 (249)
T ss_dssp EESSSTTCEEEEEEEEEEEEEEEE---ETEEEEEEEEETTS-----HHHHHHHHHHHHHHHHHHHHHTS--SCCEEEEEE
T ss_pred cccccccccccccccccccccccc---cceEEEeeeccccc-----cchhhhhhhhhhhhhhhhccccc--ccceEEEEe
Confidence 222221111111111110000000 27899999999944 23456666778888887766532 223799999
Q ss_pred cCCCCCcc
Q 012482 235 DWNGSKRG 242 (462)
Q Consensus 235 DFN~~p~s 242 (462)
|||+.|.+
T Consensus 164 DfN~~~~~ 171 (249)
T PF03372_consen 164 DFNSRPDS 171 (249)
T ss_dssp E-SS-BSS
T ss_pred ecccCCcc
Confidence 99998865
No 16
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=99.68 E-value=1.5e-15 Score=144.16 Aligned_cols=166 Identities=17% Similarity=0.148 Sum_probs=105.9
Q ss_pred cEEEEeeccccccccCCccccccccCCcCcCChHHHHHHHHHHHhhCCCcEEEEeccccChhhHHHHHHHHhh------c
Q 012482 46 CISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQEFWVGNEELVLMYQERLG------N 119 (462)
Q Consensus 46 ~lrV~TyNI~~~~~~~~~~~~~~~~~~~~~~~w~~R~~~i~~~I~~~~~DII~LQEv~~~~~~~~~~l~~~l~------~ 119 (462)
.||||||||.... .....|..|+..|++.|+ +||||++|||. . .....+..++. .
T Consensus 17 ~l~I~SfNIr~fg--------------d~k~~~~~r~~~i~~il~--~~DIiglQEV~--d-~q~~~l~~ll~~Ln~~~~ 77 (276)
T smart00476 17 SLRICAFNIQSFG--------------DSKMSNATLMSIIVKILS--RYDIALVQEVR--D-SDLSAVPKLMDQLNSDSP 77 (276)
T ss_pred cEEEEEEECcccC--------------CccccHHHHHHHHHHHhc--cCCEEEEEEee--c-chhHHHHHHHHHHhhcCC
Confidence 6999999997321 123679999999999999 78999999994 2 22233333332 1
Q ss_pred CCCcEEEeecCCC--CCceeEEEEeCCcceEeeeeEEEccccc-------cccceeeeeeeecccccccCCCCcEEEEEE
Q 012482 120 AGYNTFSLARTNN--RGDGLLTALHRDYFNVLNYRELLFNDFG-------DRVAQLVHVESVVPFFQNQGGGQQEILIVN 190 (462)
Q Consensus 120 ~gy~~~~~~~~~~--~~~G~ai~~r~sr~~i~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~g~~~~v~n 190 (462)
.+|.++...+.+. .++..+++||++++.+++...+ ++.. .|....+.+.. +...++.|.++|
T Consensus 78 ~~Y~~v~s~r~gr~~~~E~~a~~Yr~drv~v~~~~~f--~d~~~~~~~~F~ReP~~~~F~~-------~~~~~~~F~li~ 148 (276)
T smart00476 78 NTYSYVSSEPLGRNSYKEQYLFLYRSDLVSVLDSYLY--DDGCECGNDVFSREPFVVKFSS-------PSTAVKEFVIVP 148 (276)
T ss_pred CCceEEecCCCCCCCCCEEEEEEEecceEEEccccee--cCCCCCccccccccceEEEEEe-------CCCCCccEEEEE
Confidence 2577776655433 3578999999999999887554 4321 22222222221 121346899999
Q ss_pred eeccCCCCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEeecCCCCCc---chhhHHH
Q 012482 191 THLLFPHDSSLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKR---GHVYKFL 248 (462)
Q Consensus 191 tHL~~~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~---s~~~~~l 248 (462)
+|+.+ . .+..++..|.+.+....++ ....|+||+||||+.+. ...++.|
T Consensus 149 ~H~~p----~---~~~~e~~aL~~v~~~~~~~--~~~~~villGDFNa~~~y~~~~~~~~i 200 (276)
T smart00476 149 LHTTP----E---AAVAEIDALYDVYLDVRQK--WGTEDVIFMGDFNAGCSYVTKKQWSSI 200 (276)
T ss_pred ecCCh----H---HHHHHHHHHHHHHHHHHHh--hccCCEEEEccCCCCCCccChhhhhhh
Confidence 99943 2 2445555555544333322 23679999999999874 4555555
No 17
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=99.61 E-value=2.1e-14 Score=130.18 Aligned_cols=208 Identities=17% Similarity=0.177 Sum_probs=135.2
Q ss_pred CcEEEEeeccccccccCCccccccccCCcCcCChHHHHHHHHHHHhhCCCcEEEEeccccChhhHHHHHHHHhhcCCCcE
Q 012482 45 CCISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQEFWVGNEELVLMYQERLGNAGYNT 124 (462)
Q Consensus 45 ~~lrV~TyNI~~~~~~~~~~~~~~~~~~~~~~~w~~R~~~i~~~I~~~~~DII~LQEv~~~~~~~~~~l~~~l~~~gy~~ 124 (462)
.-++++||||-... ......|.+.+...|+-++||||||||| .+...+.+.+.-. .|..
T Consensus 98 ~~~S~~~WnidgLd----------------ln~l~~RMrAv~H~i~l~sPdiiflQEV---~p~~y~~~~K~~s--~y~i 156 (349)
T KOG2756|consen 98 SMFSLITWNIDGLD----------------LNNLSERMRAVCHYLALYSPDVIFLQEV---IPPYYSYLKKRSS--NYEI 156 (349)
T ss_pred cEEEEEEeeccccc----------------cchHHHHHHHHHHHHHhcCCCEEEEeec---CchhhHHHHHhhh--heeE
Confidence 45788888885331 1334579999999999999999999999 3455566665322 4555
Q ss_pred EEeecCCCCCceeEEEEeCCcceEeeeeEEEccccc-cccceeeeeeeecccccccCCCCcEEEEEEeeccCCCCCCchh
Q 012482 125 FSLARTNNRGDGLLTALHRDYFNVLNYRELLFNDFG-DRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPHDSSLSV 203 (462)
Q Consensus 125 ~~~~~~~~~~~G~ai~~r~sr~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~v~ntHL~~~~~~~~~~ 203 (462)
++....+. .+.++ ..++++.+.+...+.|++.. .|.-+++++.+ +|.++.+.|+||.++..+ ..
T Consensus 157 ~~~~~~~~--~~~~~-l~~s~~~Vks~~~i~F~NS~M~R~L~I~Ev~v----------~G~Kl~l~tsHLEStr~h--~P 221 (349)
T KOG2756|consen 157 ITGHEEGY--FTAIM-LKKSRVKVKSQEIIPFPNSKMMRNLLIVEVNV----------SGNKLCLMTSHLESTRGH--AP 221 (349)
T ss_pred EEecccee--eeeee-eehhhcCccccceeccCcchhhheeEEEEEee----------cCceEEEEeccccCCCCC--Ch
Confidence 55433222 23333 45688999998889888754 44556666665 888899999999774322 24
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCEEEeecCCCCCcchhhHHHHhCCCccccccccccCCCCCCCcccccccCcCCC-
Q 012482 204 VRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGHVYKFLRSQGFVSSYDVAHQYTDGDADAHKWVSHRNHRGN- 282 (462)
Q Consensus 204 ~R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~- 282 (462)
.|..|....++.+++..... ++..||++||+|-.-.. .-+.=.--+++|.|+..+.. +...+||-+..|....
T Consensus 222 ~r~~qF~~~~~k~~EaIe~l--PnA~ViFGGD~NlrD~e-v~r~~lPD~~vDvWE~lg~p---~~~~FTwDT~~N~nl~G 295 (349)
T KOG2756|consen 222 ERMNQFKMVLKKMQEAIESL--PNATVIFGGDTNLRDRE-VTRCGLPDNIVDVWEFLGKP---KHCQFTWDTQMNSNLGG 295 (349)
T ss_pred HHHHHHHHHHHHHHHHHHhC--CCceEEEcCcccchhhh-cccCCCCchHHHHHHHhCCC---CcCceeeecccCcccch
Confidence 57788777777777665543 67889999999974321 11111122456677766532 3455788776652211
Q ss_pred ----cccccceeccCC
Q 012482 283 ----ICGVDFIWLRNP 294 (462)
Q Consensus 283 ----~~~iD~If~s~~ 294 (462)
..|+|.||.+..
T Consensus 296 ~~a~k~RfDRi~~r~~ 311 (349)
T KOG2756|consen 296 TAACKLRFDRIFFRAA 311 (349)
T ss_pred hHHHHHHHHHHhhhhh
Confidence 257888887433
No 18
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=99.50 E-value=4e-13 Score=125.55 Aligned_cols=161 Identities=16% Similarity=0.133 Sum_probs=98.6
Q ss_pred CcEEEEeeccccccccCCccccccccCCcCcCChHHHHHHHHHHHhhC-CCcEEEEeccccChhhHH--------HH---
Q 012482 45 CCISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICE-RSSVICLQEFWVGNEELV--------LM--- 112 (462)
Q Consensus 45 ~~lrV~TyNI~~~~~~~~~~~~~~~~~~~~~~~w~~R~~~i~~~I~~~-~~DII~LQEv~~~~~~~~--------~~--- 112 (462)
..++|+|||+....+.. ..+| .-.+...|... .+||+++||+. ..... ..
T Consensus 23 ~~~~~~twn~qg~s~~~-------------~~kw---~~~v~~l~~~~~~~DIla~QEag--s~p~~a~~~~~~~~~~g~ 84 (271)
T PRK15251 23 EDYKVATWNLQGSSAST-------------ESKW---NVNVRQLLSGENPADILMVQEAG--SLPSSAVPTGRHVQPGGV 84 (271)
T ss_pred ccceEEEeecCCCCCCC-------------hhhh---hhhHHHHhcCCCCCCEEEEEecC--CCcccccccccccccccc
Confidence 35999999997553222 2355 33466667665 69999999995 21111 00
Q ss_pred ---HHHH---hh---cCCCcEEEeecC--CCCCceeEEEEeCCcceEeeeeEEEccccccccceeeeeeeecccccccCC
Q 012482 113 ---YQER---LG---NAGYNTFSLART--NNRGDGLLTALHRDYFNVLNYRELLFNDFGDRVAQLVHVESVVPFFQNQGG 181 (462)
Q Consensus 113 ---l~~~---l~---~~gy~~~~~~~~--~~~~~G~ai~~r~sr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (462)
..+. +. ..++.++|..+. ++..-|+||+ ||++..+...+..+....|. ++.++.
T Consensus 85 ~~~v~ey~w~l~~~srpgm~YiY~~aiD~~ggr~glAIl---Sr~~a~~~~~l~~p~~~~Rp--ilgi~i---------- 149 (271)
T PRK15251 85 GIPIDEYTWNLGTRSRPNQVYIYYSRVDVGANRVNLAIV---SRRRADEVIVLRPPTVASRP--IIGIRI---------- 149 (271)
T ss_pred ccCcccEEEEccCccCCCceEEEEecccCCCCceeEEEE---ecccccceEEecCCCCcccc--eEEEEe----------
Confidence 0000 11 123444454432 3456799999 77887776666655333332 222222
Q ss_pred CCcEEEEEEeeccCCCCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEeecCCCCCcchhhHHHH
Q 012482 182 GQQEILIVNTHLLFPHDSSLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGHVYKFLR 249 (462)
Q Consensus 182 ~g~~~~v~ntHL~~~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~~~~~l~ 249 (462)
++ +.+++||+.+.. ...+.+|++.+.+.+..- .+..|++||||||..|++..+.++.
T Consensus 150 ~~--~~ffstH~~a~~----~~da~aiV~~I~~~f~~~-----~~~~pw~I~GDFNr~P~sl~~~l~~ 206 (271)
T PRK15251 150 GN--DVFFSIHALANG----GTDAGAIVRAVHNFFRPN-----MRHINWMIAGDFNRSPDRLESTLDT 206 (271)
T ss_pred cC--eEEEEeeecCCC----CccHHHHHHHHHHHHhhc-----cCCCCEEEeccCCCCCcchhhhhcc
Confidence 22 799999996642 233778888887777511 1357999999999999999777763
No 19
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.43 E-value=2.7e-13 Score=112.95 Aligned_cols=102 Identities=20% Similarity=0.307 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHH
Q 012482 308 AVFSIIKCQLQKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFK 387 (462)
Q Consensus 308 ~v~~ii~~~l~~~~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~ 387 (462)
-++.+++ +.+++++++||.++|+|++ |.|++++|+.+|..|| ...++++++.||++ +.|.|+|.-|+
T Consensus 21 nvFamf~---q~QIqEfKEAF~~mDqnrD-G~IdkeDL~d~~aSlG-----k~~~d~elDaM~~E----a~gPINft~FL 87 (171)
T KOG0031|consen 21 NVFAMFD---QSQIQEFKEAFNLMDQNRD-GFIDKEDLRDMLASLG-----KIASDEELDAMMKE----APGPINFTVFL 87 (171)
T ss_pred hHHHHhh---HHHHHHHHHHHHHHhccCC-CcccHHHHHHHHHHcC-----CCCCHHHHHHHHHh----CCCCeeHHHHH
Confidence 3455555 7899999999999999999 9999999999999999 57999999999994 78999999999
Q ss_pred HHHhhhhccccccccCcccccccccccccccceEecccccCCcccccCcCCCCC
Q 012482 388 RMWNLSCSAQIENNCNDNMEDSKDCSEKEILGFAVKDAFLFPSEVEKGKWPENY 441 (462)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~g~~~~~~ 441 (462)
+++...+...++++. |.+|+..+++-.+|++++++
T Consensus 88 TmfGekL~gtdpe~~-------------------I~~AF~~FD~~~~G~I~~d~ 122 (171)
T KOG0031|consen 88 TMFGEKLNGTDPEEV-------------------ILNAFKTFDDEGSGKIDEDY 122 (171)
T ss_pred HHHHHHhcCCCHHHH-------------------HHHHHHhcCccCCCccCHHH
Confidence 999999998887776 56666666666666666654
No 20
>COG2374 Predicted extracellular nuclease [General function prediction only]
Probab=99.39 E-value=4.4e-12 Score=130.45 Aligned_cols=257 Identities=14% Similarity=0.172 Sum_probs=152.7
Q ss_pred ccCCCCCcEEEEeeccccccccCCccc------cccccCCcCcCChHHHHHHHHHHHhhCCCcEEEEeccccC-----h-
Q 012482 39 SSIMGECCISCTTFNILAPIYKRLDHQ------NQSLRESDVRDSWFNRNQTILDWLICERSSVICLQEFWVG-----N- 106 (462)
Q Consensus 39 ~~~~~~~~lrV~TyNI~~~~~~~~~~~------~~~~~~~~~~~~w~~R~~~i~~~I~~~~~DII~LQEv~~~-----~- 106 (462)
.++.-.+.|||.+|||+... .+.+.+ +.-||...........+.++...|..+++||++|-|++.. +
T Consensus 456 t~~~v~G~LkiasfNVlNyf-~~~~~~g~~~~~~~d~rga~~~~e~~~Q~~k~v~ai~~ldaDV~GL~Eien~~~~~~s~ 534 (798)
T COG2374 456 TPPDVGGSLKIASFNVLNYF-NKLSGDGGGASTFSDCRGANTTEEFARQRAKIVTAILTLDADVLGLMEIENNGYGTDSG 534 (798)
T ss_pred CccccCceeeeeeeehhhhh-ccCCCCCCCccccccccCccchhHHHHHHHHHHHHHhhcchhhheeeeeeccCCCCCcH
Confidence 33555689999999997432 101111 1224444445566777889999999999999999999611 1
Q ss_pred ---hhHHHHHHHHhhcC-CCcEEEeecC---CCCCceeEEEEeCCcceEeeeeEEEccccccccceeeeeeeeccccc-c
Q 012482 107 ---EELVLMYQERLGNA-GYNTFSLART---NNRGDGLLTALHRDYFNVLNYRELLFNDFGDRVAQLVHVESVVPFFQ-N 178 (462)
Q Consensus 107 ---~~~~~~l~~~l~~~-gy~~~~~~~~---~~~~~G~ai~~r~sr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 178 (462)
.++...+.+.+..- .|..+...+. +....+++++|+.++..+.....+.-......++..-.-....++.+ .
T Consensus 535 ~ai~~lV~~lna~~G~~~~y~~v~p~~~~~lgtD~I~vg~iY~~~~V~~~g~~~~~~~~a~~~v~~~~~~n~R~~laqtF 614 (798)
T COG2374 535 DAIAQLVNALNAKAGAGTRYAFVAPGRNGGLGTDAIRVGFIYKPSAVSLVGKAAIVDNDAFLGVGEIDDNNARPPLAQTF 614 (798)
T ss_pred HHHHHHHHHHHhhcCCCceEEEEecCccCCcCCCceeEEEEeccceEEecccccccccccccccccccccccCcchhhhh
Confidence 12233333334333 3555554433 22356788999999887776654432221111111110000000010 0
Q ss_pred -cCCCCcEEEEEEeeccCCCC------------CCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEeecCCCCCcchhh
Q 012482 179 -QGGGQQEILIVNTHLLFPHD------------SSLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGHVY 245 (462)
Q Consensus 179 -~~~~g~~~~v~ntHL~~~~~------------~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~~~ 245 (462)
....+.+|+|+.-||++... ......|.+|+++|..++...... ..+.|++|.||||+...+.++
T Consensus 615 ~~~~~~ekfvvVvNHfkSKgs~~p~~gd~~dgQg~~~~~R~~~AqaL~~~la~~~~~--~~d~~~viLGD~N~y~~edpI 692 (798)
T COG2374 615 QDLSGGEKFVVVVNHFKSKGSDCPVDGDTQDGQGNSNQTRVRAAQALAAFLATNPTG--KADADIVILGDFNDYAFEDPI 692 (798)
T ss_pred hhccCCcEEEEEEeeecccCCCCCCcccccccccchhhHHHHHHHHHHHHHhhCccc--ccCCCEEEEeccchhhhccHH
Confidence 01256679999999977211 113457999999999999864332 347899999999999999999
Q ss_pred HHHHhCCCccccccccccCCCCCCCcccccccCcCCCcccccceeccCCCCCCChhhHHHH
Q 012482 246 KFLRSQGFVSSYDVAHQYTDGDADAHKWVSHRNHRGNICGVDFIWLRNPNQSRKPLQASWA 306 (462)
Q Consensus 246 ~~l~~~g~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~iD~If~s~~~~~~~~~~~~~~ 306 (462)
+.|++.|+.......+.. ..+|.-. +.++..-+||++.|.....+......|.
T Consensus 693 ~~l~~aGy~~l~~~~~~~------~~~YSY~--f~G~~gtLDhaLas~sl~~~v~~a~ewH 745 (798)
T COG2374 693 QALEGAGYMNLAARFHDA------GDRYSYV--FNGQSGTLDHALASASLAAQVSGATEWH 745 (798)
T ss_pred HHHhhcCchhhhhhccCC------CCceEEE--ECCccchHhhhhhhhhhhhhccCceeee
Confidence 999998866533322211 1233322 3466677999999866444444444443
No 21
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.38 E-value=1.3e-12 Score=102.53 Aligned_cols=73 Identities=22% Similarity=0.219 Sum_probs=65.7
Q ss_pred HHHhhhHHHHHHhhhcc-CCCCCcccHHHHHHHHHH-cccCCCCCCCCH-HHHHHHHHhhCCCCCCcccHHHHHHHHhhh
Q 012482 317 LQKASLAENDAFAFFKA-DNNGDVITHSAFCEALRQ-VNLAGLPYGLSF-QETDDLWAQADVDGNGVVNYEEFKRMWNLS 393 (462)
Q Consensus 317 l~~~~~~~~~~F~~~D~-d~~~G~i~~~el~~~l~~-lg~~~~~~~~~~-~e~~~l~~~~D~~~~g~I~~~eF~~~~~~~ 393 (462)
++.....++++|+.||+ +++ |+|+.+||+.+|+. || ..+++ +++++||+.+|.|+||.|+|+||+.+|...
T Consensus 3 lE~ai~~l~~~F~~fd~~~~~-g~i~~~ELk~ll~~elg-----~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 3 LEKAIETLVSNFHKASVKGGK-ESLTASEFQELLTQQLP-----HLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHHHHHHhCCCCC-CeECHHHHHHHHHHHhh-----hhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 35667889999999999 999 99999999999998 88 35777 999999999999999999999999999876
Q ss_pred hc
Q 012482 394 CS 395 (462)
Q Consensus 394 ~~ 395 (462)
..
T Consensus 77 ~~ 78 (89)
T cd05022 77 AK 78 (89)
T ss_pred HH
Confidence 54
No 22
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.30 E-value=9.1e-12 Score=107.31 Aligned_cols=86 Identities=24% Similarity=0.373 Sum_probs=74.5
Q ss_pred hHHHHHHHHHHHHHHHHH-hhhHHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCCCCc
Q 012482 302 QASWAEAVFSIIKCQLQK-ASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGV 380 (462)
Q Consensus 302 ~~~~~~~v~~ii~~~l~~-~~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~~g~ 380 (462)
...|.+|+..+-...... ..+++++||+.||.|++ |+|+..||+.+|+.+| ..++++|+++|++.+|.|++|.
T Consensus 71 ~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~d-G~Is~~eL~~vl~~lg-----e~~~deev~~ll~~~d~d~dG~ 144 (160)
T COG5126 71 TVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHD-GYISIGELRRVLKSLG-----ERLSDEEVEKLLKEYDEDGDGE 144 (160)
T ss_pred ccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCC-ceecHHHHHHHHHhhc-----ccCCHHHHHHHHHhcCCCCCce
Confidence 346777777766654433 35899999999999999 9999999999999999 6999999999999999999999
Q ss_pred ccHHHHHHHHhhh
Q 012482 381 VNYEEFKRMWNLS 393 (462)
Q Consensus 381 I~~~eF~~~~~~~ 393 (462)
|+|+||++++...
T Consensus 145 i~~~eF~~~~~~~ 157 (160)
T COG5126 145 IDYEEFKKLIKDS 157 (160)
T ss_pred EeHHHHHHHHhcc
Confidence 9999999987643
No 23
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.29 E-value=1.4e-11 Score=96.81 Aligned_cols=73 Identities=21% Similarity=0.336 Sum_probs=65.2
Q ss_pred HHHhhhHHHHHHhhhc-cCCCCC-cccHHHHHHHHHH-----cccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHH
Q 012482 317 LQKASLAENDAFAFFK-ADNNGD-VITHSAFCEALRQ-----VNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRM 389 (462)
Q Consensus 317 l~~~~~~~~~~F~~~D-~d~~~G-~i~~~el~~~l~~-----lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~ 389 (462)
++.....++++|+.|| +|++ | +|+.+||+.+|+. +| ...+++++++||+.+|.|++|.|+|+||+.+
T Consensus 3 le~~~~~l~~aF~~fD~~dgd-G~~I~~~eL~~ll~~~~~~~lg-----~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~l 76 (88)
T cd05027 3 LEKAMVALIDVFHQYSGREGD-KHKLKKSELKELINNELSHFLE-----EIKEQEVVDKVMETLDSDGDGECDFQEFMAF 76 (88)
T ss_pred HHHHHHHHHHHHHHhcccCCC-cCEECHHHHHHHHHHHhHHHhc-----CCCCHHHHHHHHHHhCCCCCCcCcHHHHHHH
Confidence 4567788999999998 7999 9 5999999999999 88 3678899999999999999999999999999
Q ss_pred Hhhhhc
Q 012482 390 WNLSCS 395 (462)
Q Consensus 390 ~~~~~~ 395 (462)
+.....
T Consensus 77 i~~~~~ 82 (88)
T cd05027 77 VAMVTT 82 (88)
T ss_pred HHHHHH
Confidence 876553
No 24
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.25 E-value=1.9e-11 Score=106.93 Aligned_cols=85 Identities=28% Similarity=0.401 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHHHHHHHH-----hhhHHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCC
Q 012482 302 QASWAEAVFSIIKCQLQK-----ASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVD 376 (462)
Q Consensus 302 ~~~~~~~v~~ii~~~l~~-----~~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~ 376 (462)
...+.+|+..+....... ...++++||+.||+|++ |+|+.+||+.+|..+| .+.+.++++.|++.+|.|
T Consensus 60 ~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~-G~Is~~el~~~l~~lg-----~~~~~~e~~~mi~~~d~d 133 (151)
T KOG0027|consen 60 TIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGD-GFISASELKKVLTSLG-----EKLTDEECKEMIREVDVD 133 (151)
T ss_pred eEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCC-CcCcHHHHHHHHHHhC-----CcCCHHHHHHHHHhcCCC
Confidence 345666666555543322 23589999999999999 9999999999999999 589999999999999999
Q ss_pred CCCcccHHHHHHHHhh
Q 012482 377 GNGVVNYEEFKRMWNL 392 (462)
Q Consensus 377 ~~g~I~~~eF~~~~~~ 392 (462)
+||.|+|+||+++|..
T Consensus 134 ~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 134 GDGKVNFEEFVKMMSG 149 (151)
T ss_pred CCCeEeHHHHHHHHhc
Confidence 9999999999999864
No 25
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.24 E-value=4.3e-11 Score=112.97 Aligned_cols=197 Identities=16% Similarity=0.093 Sum_probs=111.8
Q ss_pred CCCcEEEEeeccccccccCCccccccccCCcCcCChHHHHHHHHHHHhhCCCcEEEEeccccChhhHHHHHHHHhhcCCC
Q 012482 43 GECCISCTTFNILAPIYKRLDHQNQSLRESDVRDSWFNRNQTILDWLICERSSVICLQEFWVGNEELVLMYQERLGNAGY 122 (462)
Q Consensus 43 ~~~~lrV~TyNI~~~~~~~~~~~~~~~~~~~~~~~w~~R~~~i~~~I~~~~~DII~LQEv~~~~~~~~~~l~~~l~~~gy 122 (462)
.+..++++++|++++.. -...++..++..++|+|.+||.. .+....-..+. ..|
T Consensus 85 ~~~~~~~l~~N~r~~n~---------------------~~~k~Lsl~~~~~~D~v~~~E~~----~~~~~~~~~l~-~~y 138 (309)
T COG3021 85 DQRLLWNLQKNVRFDNA---------------------SVAKLLSLIQQLDADAVTTPEGV----QLWTAKVGALA-AQY 138 (309)
T ss_pred cchhhhhhhhhccccCc---------------------CHHHHHHHHhhhCcchhhhHHHH----HHhHhHHHHHH-HhC
Confidence 45578999999876630 04567888888889999999983 22222222233 245
Q ss_pred cEEEeecCCCCCceeEEEEeCCcceEeeeeEEEccccccccceeeeeeeecccccccCCCCcEEEEEEeecc-CCCCCCc
Q 012482 123 NTFSLARTNNRGDGLLTALHRDYFNVLNYRELLFNDFGDRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLL-FPHDSSL 201 (462)
Q Consensus 123 ~~~~~~~~~~~~~G~ai~~r~sr~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~ntHL~-~~~~~~~ 201 (462)
.++.....+...-+.+++.+....+..... -++. .++.+.+..... ..|+.+.|++.|.. ++-. .
T Consensus 139 P~~~~~~~~~~~~~~a~~sr~~~~~~~~~e-~~~~--~pk~~~~t~~~~---------~~g~~l~v~~lh~~~~~~~--~ 204 (309)
T COG3021 139 PAFILCQHPTGVFTLAILSRRPCCPLTEAE-PWLR--LPKSALATAYPL---------PDGTELTVVALHAVNFPVG--T 204 (309)
T ss_pred CceeecCCCCCeeeeeeccccccccccccC-cccc--CCccceeEEEEc---------CCCCEEEEEeeccccccCC--c
Confidence 554433222234556666433321111111 1111 122333322211 17899999999996 4321 1
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEeecCCCCCcchhhHHHHhCCCccccccccccCCCCCCCcccccccCcCC
Q 012482 202 SVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGHVYKFLRSQGFVSSYDVAHQYTDGDADAHKWVSHRNHRG 281 (462)
Q Consensus 202 ~~~R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~w~~~~~~~~ 281 (462)
...| +|..++.+.+..+ ..|+|++||||+.|.|..++.+...|-...+..++ . ....+|...... .
T Consensus 205 ~~~~-~ql~~l~~~i~~~-------~gpvIlaGDfNa~pWS~~~~R~~~l~~~~~~~~aG-~----~~~~~~p~~~~r-~ 270 (309)
T COG3021 205 DPQR-AQLLELGDQIAGH-------SGPVILAGDFNAPPWSRTAKRMAALGGLRAAPRAG-L----WEVRFTPDERRR-A 270 (309)
T ss_pred cHHH-HHHHHHHHHHHcC-------CCCeEEeecCCCcchhHHHHHHHHhcccccchhcc-C----CccccCHHHHhh-c
Confidence 2233 7777777777654 46999999999999999999997765555444443 1 111122221110 1
Q ss_pred CcccccceeccC
Q 012482 282 NICGVDFIWLRN 293 (462)
Q Consensus 282 ~~~~iD~If~s~ 293 (462)
....|||||+++
T Consensus 271 ~g~PIDhvf~rg 282 (309)
T COG3021 271 FGLPIDHVFYRG 282 (309)
T ss_pred cCCCcceeeecC
Confidence 123599999987
No 26
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.24 E-value=2.4e-11 Score=90.41 Aligned_cols=62 Identities=24% Similarity=0.487 Sum_probs=53.8
Q ss_pred HHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCH----HHHHHHHHhhCCCCCCcccHHHHHHHH
Q 012482 323 AENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSF----QETDDLWAQADVDGNGVVNYEEFKRMW 390 (462)
Q Consensus 323 ~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~----~e~~~l~~~~D~~~~g~I~~~eF~~~~ 390 (462)
.++++|+.+|.|++ |+|+.+||+.+++.++. ..++ +.++.+++.+|.|+||.|+|+||+++|
T Consensus 1 ~l~~~F~~~D~d~~-G~i~~~el~~~~~~~~~-----~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGD-GYISKEELRRALKHLGR-----DMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSS-SEEEHHHHHHHHHHTTS-----HSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCcc-CCCCHHHHHHHHHHhcc-----cccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 36899999999999 99999999999999983 4444 455556999999999999999999886
No 27
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.20 E-value=7.4e-11 Score=93.99 Aligned_cols=77 Identities=14% Similarity=0.138 Sum_probs=63.1
Q ss_pred HHHhhhHHHHHHhhhc-cCCCCC-cccHHHHHHHHHH-cccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhh
Q 012482 317 LQKASLAENDAFAFFK-ADNNGD-VITHSAFCEALRQ-VNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRMWNLS 393 (462)
Q Consensus 317 l~~~~~~~~~~F~~~D-~d~~~G-~i~~~el~~~l~~-lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~~~ 393 (462)
++.+...++++|+.|| +|++ | +|+.+||+.+|+. ++- ......++.++++||+++|.|+||.|+|+||+.+|...
T Consensus 5 le~a~~~~~~~F~~~dd~dgd-g~~Is~~EL~~ll~~~~~~-~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 5 LEGAMDTLIRIFHNYSGKEGD-RYKLSKGELKELLQRELTD-FLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHHHHHHHHccCCC-CCEECHHHHHHHHHHHhHH-hcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 4567788999999999 7899 8 5999999999976 320 00124578899999999999999999999999999876
Q ss_pred hc
Q 012482 394 CS 395 (462)
Q Consensus 394 ~~ 395 (462)
..
T Consensus 83 ~~ 84 (93)
T cd05026 83 TV 84 (93)
T ss_pred HH
Confidence 54
No 28
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.15 E-value=4e-11 Score=106.50 Aligned_cols=101 Identities=17% Similarity=0.257 Sum_probs=91.8
Q ss_pred hhHHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHh-----hhhc
Q 012482 321 SLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRMWN-----LSCS 395 (462)
Q Consensus 321 ~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~-----~~~~ 395 (462)
.+.+...|..+|+|++ |.|+.+||+++|.+.+. ..++.+.++.||..||.+++|+|+|.||..+|. +...
T Consensus 56 ~~~~~~~f~~vD~d~s-g~i~~~eLq~aLsn~~~----~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~~Wr~vF 130 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRS-GRILAKELQQALSNGTW----SPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYINQWRNVF 130 (221)
T ss_pred cHHHHHHHHhhCcccc-ccccHHHHHHHhhcCCC----CCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999 99999999999997764 689999999999999999999999999999998 5566
Q ss_pred cccccccCcccccccccccccccceEecccc
Q 012482 396 AQIENNCNDNMEDSKDCSEKEILGFAVKDAF 426 (462)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~ 426 (462)
.+.++|.++.++..|+..+.+.+||.+++.+
T Consensus 131 ~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~ 161 (221)
T KOG0037|consen 131 RTYDRDRSGTIDSSELRQALTQLGYRLSPQF 161 (221)
T ss_pred HhcccCCCCcccHHHHHHHHHHcCcCCCHHH
Confidence 8899999999999999999999999976544
No 29
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.15 E-value=1.9e-10 Score=91.63 Aligned_cols=77 Identities=16% Similarity=0.234 Sum_probs=64.5
Q ss_pred HHHhhhHHHHHHhhhc-cCCCCC-cccHHHHHHHHHH-cccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhh
Q 012482 317 LQKASLAENDAFAFFK-ADNNGD-VITHSAFCEALRQ-VNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRMWNLS 393 (462)
Q Consensus 317 l~~~~~~~~~~F~~~D-~d~~~G-~i~~~el~~~l~~-lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~~~ 393 (462)
++.....++++|+.|| .|++ | +|+..||+.+|+. +|.. .+..++++++++||+.+|.|++|.|+|+||+.++...
T Consensus 4 ~e~~~~~l~~~F~~fDd~dg~-G~~Is~~El~~~l~~~lg~~-~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 4 LETAMETLINVFHAHSGKEGD-KYKLSKKELKDLLQTELSDF-LDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHHHHHHHhcccCC-CCeECHHHHHHHHHHHHHHH-ccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 4566788999999997 9999 9 5999999999985 6520 0124588999999999999999999999999999876
Q ss_pred hc
Q 012482 394 CS 395 (462)
Q Consensus 394 ~~ 395 (462)
..
T Consensus 82 ~~ 83 (92)
T cd05025 82 TV 83 (92)
T ss_pred HH
Confidence 54
No 30
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.14 E-value=2e-10 Score=90.20 Aligned_cols=74 Identities=15% Similarity=0.222 Sum_probs=63.7
Q ss_pred HHHhhhHHHHHHhhhcc-CCCCCcccHHHHHHHHHH---cccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhh
Q 012482 317 LQKASLAENDAFAFFKA-DNNGDVITHSAFCEALRQ---VNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRMWNL 392 (462)
Q Consensus 317 l~~~~~~~~~~F~~~D~-d~~~G~i~~~el~~~l~~---lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~~ 392 (462)
++++...+.+.|+.||. |+++|+|+.+||+.+|+. +| .+++++++++||+.+|.|++|.|+|+||+.+|..
T Consensus 5 ~e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg-----~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 5 LDQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIG-----SKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Confidence 35566788899999998 772399999999999963 67 4789999999999999999999999999999886
Q ss_pred hhc
Q 012482 393 SCS 395 (462)
Q Consensus 393 ~~~ 395 (462)
...
T Consensus 80 l~~ 82 (88)
T cd05029 80 LAL 82 (88)
T ss_pred HHH
Confidence 543
No 31
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.10 E-value=3.5e-10 Score=90.44 Aligned_cols=70 Identities=16% Similarity=0.228 Sum_probs=61.2
Q ss_pred HHhhhHHHHHHhhhcc-CC-CCCcccHHHHHHHHHH-----cccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 012482 318 QKASLAENDAFAFFKA-DN-NGDVITHSAFCEALRQ-----VNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRMW 390 (462)
Q Consensus 318 ~~~~~~~~~~F~~~D~-d~-~~G~i~~~el~~~l~~-----lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~ 390 (462)
+.....++++|..||. |+ + |+|+..||+.+|+. +| ..++++++++|++.+|.+++|.|+|+||+++|
T Consensus 4 ~~~~~~l~~~F~~~D~~dg~d-G~Is~~El~~~l~~~~g~~lg-----~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~ 77 (94)
T cd05031 4 EHAMESLILTFHRYAGKDGDK-NTLSRKELKKLMEKELSEFLK-----NQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLV 77 (94)
T ss_pred HHHHHHHHHHHHHHhccCCCC-CeECHHHHHHHHHHHhHHHhh-----ccccHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 3455678999999997 97 7 99999999999986 45 36789999999999999999999999999988
Q ss_pred hhh
Q 012482 391 NLS 393 (462)
Q Consensus 391 ~~~ 393 (462)
...
T Consensus 78 ~~~ 80 (94)
T cd05031 78 AGL 80 (94)
T ss_pred HHH
Confidence 743
No 32
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.08 E-value=3e-10 Score=99.37 Aligned_cols=74 Identities=24% Similarity=0.437 Sum_probs=67.7
Q ss_pred HHhhhHHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhccc
Q 012482 318 QKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRMWNLSCSAQ 397 (462)
Q Consensus 318 ~~~~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~~~~~~~ 397 (462)
..+..+++++|+.||+|++ |+|+..||+.+|+.+|. .++.+++..+++++|.+++|.|+|+||+.+|.+.....
T Consensus 4 ~~~~~el~~~F~~fD~d~~-G~i~~~el~~~lr~lg~-----~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~ 77 (151)
T KOG0027|consen 4 EEQILELKEAFQLFDKDGD-GKISVEELGAVLRSLGQ-----NPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEK 77 (151)
T ss_pred HHHHHHHHHHHHHHCCCCC-CcccHHHHHHHHHHcCC-----CCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccc
Confidence 3456789999999999999 99999999999999994 89999999999999999999999999999999776543
No 33
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.06 E-value=5.3e-10 Score=89.83 Aligned_cols=69 Identities=17% Similarity=0.286 Sum_probs=62.6
Q ss_pred HHhhhHHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhh
Q 012482 318 QKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRMWNLSC 394 (462)
Q Consensus 318 ~~~~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~~~~ 394 (462)
..+...++++|+.+|.|++ |.|+.+||+.+|+.+| ++++++++|++.+|.+++|.|+|+||+.+|....
T Consensus 6 ~~~~~~l~~~F~~~D~d~~-G~Is~~el~~~l~~~~-------~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~ 74 (96)
T smart00027 6 PEDKAKYEQIFRSLDKNQD-GTVTGAQAKPILLKSG-------LPQTLLAKIWNLADIDNDGELDKDEFALAMHLIY 74 (96)
T ss_pred HHHHHHHHHHHHHhCCCCC-CeEeHHHHHHHHHHcC-------CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHH
Confidence 4566789999999999999 9999999999999977 5889999999999999999999999999887554
No 34
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.04 E-value=4.2e-10 Score=97.11 Aligned_cols=76 Identities=21% Similarity=0.369 Sum_probs=69.4
Q ss_pred HHHHhhhHHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhc
Q 012482 316 QLQKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRMWNLSCS 395 (462)
Q Consensus 316 ~l~~~~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~~~~~ 395 (462)
..+.++++++++|..+|+|++ |.|+..||..+|+.+|. .+++.++.+|+..+|. +.|.|+|.+|+.+|.....
T Consensus 14 ~t~~qi~~lkeaF~l~D~d~~-G~I~~~el~~ilr~lg~-----~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~ 86 (160)
T COG5126 14 LTEEQIQELKEAFQLFDRDSD-GLIDRNELGKILRSLGF-----NPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLK 86 (160)
T ss_pred CCHHHHHHHHHHHHHhCcCCC-CCCcHHHHHHHHHHcCC-----CCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhc
Confidence 347788999999999999999 99999999999999994 8999999999999999 9999999999999998775
Q ss_pred ccc
Q 012482 396 AQI 398 (462)
Q Consensus 396 ~~~ 398 (462)
...
T Consensus 87 ~~~ 89 (160)
T COG5126 87 RGD 89 (160)
T ss_pred cCC
Confidence 444
No 35
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.03 E-value=4.5e-10 Score=94.69 Aligned_cols=77 Identities=21% Similarity=0.368 Sum_probs=69.9
Q ss_pred HHhhhHHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhccc
Q 012482 318 QKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRMWNLSCSAQ 397 (462)
Q Consensus 318 ~~~~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~~~~~~~ 397 (462)
..+.++++++|..||.+++ |+|+.+||+.+++.+|+ ....+|+.+|+.++|.++.|.|+|++|.+.|.......
T Consensus 29 ~~q~q~i~e~f~lfd~~~~-g~iD~~EL~vAmralGF-----E~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~ 102 (172)
T KOG0028|consen 29 EEQKQEIKEAFELFDPDMA-GKIDVEELKVAMRALGF-----EPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGER 102 (172)
T ss_pred HHHHhhHHHHHHhhccCCC-CcccHHHHHHHHHHcCC-----CcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhcc
Confidence 4566789999999999999 99999999999999995 78899999999999999999999999999999888765
Q ss_pred ccc
Q 012482 398 IEN 400 (462)
Q Consensus 398 ~~~ 400 (462)
+..
T Consensus 103 dt~ 105 (172)
T KOG0028|consen 103 DTK 105 (172)
T ss_pred CcH
Confidence 533
No 36
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.03 E-value=1.1e-09 Score=92.37 Aligned_cols=84 Identities=21% Similarity=0.296 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHH-HHhhhHHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCCCCccc
Q 012482 304 SWAEAVFSIIKCQL-QKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVN 382 (462)
Q Consensus 304 ~~~~~v~~ii~~~l-~~~~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~ 382 (462)
.|..++..+...+. ....++++.+|+.+|.|++ |+|+..+|+.+.+.|| +.++++|+.+||.++|.|++|.|+
T Consensus 87 ~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~-Gkis~~~lkrvakeLg-----enltD~El~eMIeEAd~d~dgevn 160 (172)
T KOG0028|consen 87 TFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDKT-GKISQRNLKRVAKELG-----ENLTDEELMEMIEEADRDGDGEVN 160 (172)
T ss_pred chHHHHHHHHHHHhccCcHHHHHHHHHcccccCC-CCcCHHHHHHHHHHhC-----ccccHHHHHHHHHHhccccccccc
Confidence 34444444333333 3355899999999999999 9999999999999999 689999999999999999999999
Q ss_pred HHHHHHHHhhh
Q 012482 383 YEEFKRMWNLS 393 (462)
Q Consensus 383 ~~eF~~~~~~~ 393 (462)
-+||..+|.+.
T Consensus 161 eeEF~~imk~t 171 (172)
T KOG0028|consen 161 EEEFIRIMKKT 171 (172)
T ss_pred HHHHHHHHhcC
Confidence 99999998753
No 37
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.02 E-value=1.5e-09 Score=85.44 Aligned_cols=78 Identities=10% Similarity=0.103 Sum_probs=62.1
Q ss_pred HHHhhhHHHHHHhh-hccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhh
Q 012482 317 LQKASLAENDAFAF-FKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRMWNLSC 394 (462)
Q Consensus 317 l~~~~~~~~~~F~~-~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~~~~ 394 (462)
++.....+..+|+. +|+|+++++|+.+||+.+|....-.-.....++.++++||+.+|.|+||.|+|+||+++|....
T Consensus 4 le~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 4 TERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 45667788999999 7888972399999999999775200001245789999999999999999999999999987654
No 38
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.99 E-value=1.4e-09 Score=81.01 Aligned_cols=62 Identities=23% Similarity=0.358 Sum_probs=56.8
Q ss_pred HHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhh
Q 012482 325 NDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRMWNLSC 394 (462)
Q Consensus 325 ~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~~~~ 394 (462)
+++|+.+|.|++ |.|+.+||+.+|+.+| +++++++++++.+|.+++|.|+|+||+.+|....
T Consensus 2 ~~~F~~~D~~~~-G~i~~~el~~~l~~~g-------~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 2 DQIFRSLDPDGD-GLISGDEARPFLGKSG-------LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred hHHHHHhCCCCC-CcCcHHHHHHHHHHcC-------CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHHH
Confidence 578999999999 9999999999999987 4889999999999999999999999999886543
No 39
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.98 E-value=1.8e-09 Score=85.19 Aligned_cols=75 Identities=20% Similarity=0.265 Sum_probs=62.6
Q ss_pred HHhhhHHHHHHhhhcc--CCCCCcccHHHHHHHHHH-cccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhh
Q 012482 318 QKASLAENDAFAFFKA--DNNGDVITHSAFCEALRQ-VNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRMWNLSC 394 (462)
Q Consensus 318 ~~~~~~~~~~F~~~D~--d~~~G~i~~~el~~~l~~-lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~~~~ 394 (462)
+.+...++++|..||+ |++ |.|+.+||+.+++. +|. ..+...+.+++++|+..+|.+++|.|+|+||+.++....
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~-G~Is~~el~~~l~~~~g~-~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~~ 81 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDK-DTLSKKELKELLETELPN-FLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKLA 81 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCC-CcCcHHHHHHHHHHHhhh-hccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHH
Confidence 4566789999999999 899 99999999999986 552 001234689999999999999999999999999987653
No 40
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.91 E-value=3.5e-09 Score=75.31 Aligned_cols=50 Identities=34% Similarity=0.577 Sum_probs=47.4
Q ss_pred CcccHHHHHHHHHHcccCCCCCC-CCHHHHHHHHHhhCCCCCCcccHHHHHHHHhh
Q 012482 338 DVITHSAFCEALRQVNLAGLPYG-LSFQETDDLWAQADVDGNGVVNYEEFKRMWNL 392 (462)
Q Consensus 338 G~i~~~el~~~l~~lg~~~~~~~-~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~~ 392 (462)
|.|+.+||+.+|..+|+ . +++++++.|+..+|.|++|.|+|+||+.+|.+
T Consensus 3 G~i~~~~~~~~l~~~g~-----~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 3 GKITREEFRRALSKLGI-----KDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SEEEHHHHHHHHHHTTS-----SSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CEECHHHHHHHHHHhCC-----CCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 99999999999988895 7 99999999999999999999999999999864
No 41
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.82 E-value=1.8e-08 Score=88.04 Aligned_cols=91 Identities=11% Similarity=0.234 Sum_probs=75.1
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCC
Q 012482 297 SRKPLQASWAEAVFSIIKCQLQKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVD 376 (462)
Q Consensus 297 ~~~~~~~~~~~~v~~ii~~~l~~~~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~ 376 (462)
.....|+.|.+|- +.++..+...|+.+|.+.| |+|+..|||.+|..||. +-|.--++.||+++|.|
T Consensus 82 kv~n~yteF~eFs--------rkqIk~~~~~Fk~yDe~rD-gfIdl~ELK~mmEKLga-----pQTHL~lK~mikeVded 147 (244)
T KOG0041|consen 82 KVFNVYTEFSEFS--------RKQIKDAESMFKQYDEDRD-GFIDLMELKRMMEKLGA-----PQTHLGLKNMIKEVDED 147 (244)
T ss_pred cccchhhhhhHHH--------HHHHHHHHHHHHHhccccc-ccccHHHHHHHHHHhCC-----chhhHHHHHHHHHhhcc
Confidence 3444556655544 4566678899999999999 99999999999999994 77777899999999999
Q ss_pred CCCcccHHHHHHHHhhhhccccccc
Q 012482 377 GNGVVNYEEFKRMWNLSCSAQIENN 401 (462)
Q Consensus 377 ~~g~I~~~eF~~~~~~~~~~~~~~~ 401 (462)
.||+|+|.||+-+++.......+.+
T Consensus 148 ~dgklSfreflLIfrkaaagEL~~d 172 (244)
T KOG0041|consen 148 FDGKLSFREFLLIFRKAAAGELQED 172 (244)
T ss_pred cccchhHHHHHHHHHHHhccccccc
Confidence 9999999999999998776654443
No 42
>PF14658 EF-hand_9: EF-hand domain
Probab=98.79 E-value=1.6e-08 Score=73.26 Aligned_cols=62 Identities=26% Similarity=0.341 Sum_probs=57.2
Q ss_pred HHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCCC-CcccHHHHHHHHhh
Q 012482 326 DAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGN-GVVNYEEFKRMWNL 392 (462)
Q Consensus 326 ~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~~-g~I~~~eF~~~~~~ 392 (462)
.+|..||.++. |.|..++|+..|+.++- ..+++.+++.|.+++|+++. |.|+|+.|+.+|+.
T Consensus 2 ~~F~~fD~~~t-G~V~v~~l~~~Lra~~~----~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKT-GRVPVSDLITYLRAVTG----RSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCC-ceEeHHHHHHHHHHHcC----CCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 37999999999 99999999999999982 37889999999999999998 99999999999975
No 43
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.79 E-value=2.6e-08 Score=83.49 Aligned_cols=95 Identities=16% Similarity=0.217 Sum_probs=79.1
Q ss_pred ccceeccCCCCCCChhhHHHHHHHHHHHHHHHHH-hhhHHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHH
Q 012482 286 VDFIWLRNPNQSRKPLQASWAEAVFSIIKCQLQK-ASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQ 364 (462)
Q Consensus 286 iD~If~s~~~~~~~~~~~~~~~~v~~ii~~~l~~-~~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~ 364 (462)
||+.+-..| ..+||+-|+..+-..+... ..+.+..||+.||.+++ |.|..+.|+++|...| ..++++
T Consensus 70 lDaM~~Ea~------gPINft~FLTmfGekL~gtdpe~~I~~AF~~FD~~~~-G~I~~d~lre~Ltt~g-----Dr~~~e 137 (171)
T KOG0031|consen 70 LDAMMKEAP------GPINFTVFLTMFGEKLNGTDPEEVILNAFKTFDDEGS-GKIDEDYLRELLTTMG-----DRFTDE 137 (171)
T ss_pred HHHHHHhCC------CCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhcCccCC-CccCHHHHHHHHHHhc-----ccCCHH
Confidence 666654322 3458888887766655432 34678899999999999 9999999999999999 699999
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHhh
Q 012482 365 ETDDLWAQADVDGNGVVNYEEFKRMWNL 392 (462)
Q Consensus 365 e~~~l~~~~D~~~~g~I~~~eF~~~~~~ 392 (462)
||++|++.+-.|..|.|+|.+|+.++..
T Consensus 138 EV~~m~r~~p~d~~G~~dy~~~~~~ith 165 (171)
T KOG0031|consen 138 EVDEMYREAPIDKKGNFDYKAFTYIITH 165 (171)
T ss_pred HHHHHHHhCCcccCCceeHHHHHHHHHc
Confidence 9999999999999999999999999974
No 44
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.78 E-value=2.5e-08 Score=78.52 Aligned_cols=72 Identities=18% Similarity=0.276 Sum_probs=61.2
Q ss_pred HHHhhhHHHHHHhhhccC--CCCCcccHHHHHHHHH-HcccCCCCCCCC----HHHHHHHHHhhCCCCCCcccHHHHHHH
Q 012482 317 LQKASLAENDAFAFFKAD--NNGDVITHSAFCEALR-QVNLAGLPYGLS----FQETDDLWAQADVDGNGVVNYEEFKRM 389 (462)
Q Consensus 317 l~~~~~~~~~~F~~~D~d--~~~G~i~~~el~~~l~-~lg~~~~~~~~~----~~e~~~l~~~~D~~~~g~I~~~eF~~~ 389 (462)
+++....+...|+.++.. .+ |+|+.+||+.+|. .+| ..++ +++++.|++.+|.|++|.|+|+||+.+
T Consensus 3 ~e~~i~~~~~~f~~y~~~~~~~-~~Is~~El~~ll~~~~g-----~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~ 76 (88)
T cd05030 3 LEKAIETIINVFHQYSVRKGHP-DTLYKKEFKQLVEKELP-----NFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVL 76 (88)
T ss_pred HHHHHHHHHHHHHHHhccCCCc-ccCCHHHHHHHHHHHhh-----HhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHH
Confidence 456677888999999865 36 9999999999996 566 2455 899999999999999999999999999
Q ss_pred Hhhhh
Q 012482 390 WNLSC 394 (462)
Q Consensus 390 ~~~~~ 394 (462)
+....
T Consensus 77 ~~~~~ 81 (88)
T cd05030 77 VIKVG 81 (88)
T ss_pred HHHHH
Confidence 88654
No 45
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.73 E-value=4.2e-08 Score=70.99 Aligned_cols=61 Identities=31% Similarity=0.590 Sum_probs=56.9
Q ss_pred HHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 012482 324 ENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRMW 390 (462)
Q Consensus 324 ~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~ 390 (462)
++.+|..+|.+++ |.|+.+|+..+++.++. ..+.+++..++..+|.+++|.|+|+||+.++
T Consensus 2 ~~~~f~~~d~~~~-g~l~~~e~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGD-GTISADELKAALKSLGE-----GLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCC-CcCcHHHHHHHHHHhCC-----CCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999 99999999999999984 7889999999999999999999999999876
No 46
>PTZ00183 centrin; Provisional
Probab=98.70 E-value=7.2e-08 Score=84.62 Aligned_cols=84 Identities=19% Similarity=0.265 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHH-HHhhhHHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCCCCcc
Q 012482 303 ASWAEAVFSIIKCQL-QKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVV 381 (462)
Q Consensus 303 ~~~~~~v~~ii~~~l-~~~~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I 381 (462)
.+|.+++..+..... ......++.+|+.+|.+++ |.|+..||+.+|..+|. .+++++++.++..+|.+++|.|
T Consensus 70 i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~~~~-G~i~~~e~~~~l~~~~~-----~l~~~~~~~~~~~~d~~~~g~i 143 (158)
T PTZ00183 70 IDFEEFLDIMTKKLGERDPREEILKAFRLFDDDKT-GKISLKNLKRVAKELGE-----TITDEELQEMIDEADRNGDGEI 143 (158)
T ss_pred EeHHHHHHHHHHHhcCCCcHHHHHHHHHHhCCCCC-CcCcHHHHHHHHHHhCC-----CCCHHHHHHHHHHhCCCCCCcC
Confidence 355565554433211 1223568899999999999 99999999999999884 7999999999999999999999
Q ss_pred cHHHHHHHHhh
Q 012482 382 NYEEFKRMWNL 392 (462)
Q Consensus 382 ~~~eF~~~~~~ 392 (462)
+|+||+.++..
T Consensus 144 ~~~ef~~~~~~ 154 (158)
T PTZ00183 144 SEEEFYRIMKK 154 (158)
T ss_pred cHHHHHHHHhc
Confidence 99999999865
No 47
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.69 E-value=5.9e-08 Score=80.01 Aligned_cols=63 Identities=10% Similarity=0.202 Sum_probs=55.8
Q ss_pred HHhhhHHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 012482 318 QKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRMW 390 (462)
Q Consensus 318 ~~~~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~ 390 (462)
......+..+|..+|.|++ |+|+.+||+.++ ++ ..+..+..++..+|.|+||.|+++||+..+
T Consensus 44 ~~~~~~l~w~F~~lD~d~D-G~Ls~~EL~~~~--l~-------~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 44 PMCKDPVGWMFNQLDGNYD-GKLSHHELAPIR--LD-------PNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHHHHCCCCC-CcCCHHHHHHHH--cc-------chHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 3455678899999999999 999999999876 43 457889999999999999999999999988
No 48
>PTZ00183 centrin; Provisional
Probab=98.66 E-value=2.5e-08 Score=87.61 Aligned_cols=70 Identities=23% Similarity=0.414 Sum_probs=62.5
Q ss_pred HHhhhHHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhh
Q 012482 318 QKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRMWNLS 393 (462)
Q Consensus 318 ~~~~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~~~ 393 (462)
+.+..+++++|..+|.+++ |+|+..||..+|+.+|. .++.+++..++..+|.+++|.|+|.||+.++...
T Consensus 13 ~~~~~~~~~~F~~~D~~~~-G~i~~~e~~~~l~~~g~-----~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~ 82 (158)
T PTZ00183 13 EDQKKEIREAFDLFDTDGS-GTIDPKELKVAMRSLGF-----EPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKK 82 (158)
T ss_pred HHHHHHHHHHHHHhCCCCC-CcccHHHHHHHHHHhCC-----CCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHH
Confidence 3455678899999999999 99999999999999984 6788999999999999999999999999887654
No 49
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=98.65 E-value=3.9e-07 Score=89.14 Aligned_cols=134 Identities=19% Similarity=0.187 Sum_probs=70.3
Q ss_pred CCCcE--EEEecc-cc--------Chh---hHHHHHHHHhhc-CCCcEEEeecCCCCCceeEEEEeCCcceEee---eeE
Q 012482 92 ERSSV--ICLQEF-WV--------GNE---ELVLMYQERLGN-AGYNTFSLARTNNRGDGLLTALHRDYFNVLN---YRE 153 (462)
Q Consensus 92 ~~~DI--I~LQEv-~~--------~~~---~~~~~l~~~l~~-~gy~~~~~~~~~~~~~G~ai~~r~sr~~i~~---~~~ 153 (462)
..||| |+|||+ +. ... .....+...|.. ..|..+... .-.+-++.||.+.+-.+-+. ...
T Consensus 37 ~~pDI~viglQEi~~~~~~~~~~~~~~~~~~W~~~i~~~l~~~~~Y~~v~~~--~l~gi~l~vf~~~~~~~~i~~v~~~~ 114 (310)
T smart00128 37 EKPDIYVIGLQEVVDLENGVLLETIAGKERLWSKLIESSLNGDGQYNVLAKV--RLVGILVLVFVKANHLVYIKDVETFT 114 (310)
T ss_pred CCCCEEEEEeeeecccchhhhhhccchhHHHHHHHHHHhcCCCCceEEEeee--eecceEEEEEEehhhcCccceeEeee
Confidence 67999 779999 20 011 112222233331 335444432 23355778887766432222 222
Q ss_pred EEccc---cccccceeeeeeeecccccccCCCCcEEEEEEeeccCCCCCCchhHHHHHHHHHHHHHHHHHhhc--CCCCC
Q 012482 154 LLFND---FGDRVAQLVHVESVVPFFQNQGGGQQEILIVNTHLLFPHDSSLSVVRLHQVYKILQYLELYQTEN--KLNHI 228 (462)
Q Consensus 154 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~v~ntHL~~~~~~~~~~~R~~Q~~~l~~~l~~~~~~~--~~~~~ 228 (462)
+...- ..++.+..+.+.. .+..+.++|+||.++. .....|..+...+++.+.--.... .....
T Consensus 115 v~~G~~~~~~nKG~v~i~~~~----------~~~~~~fv~~HL~a~~--~~~~~R~~~~~~I~~~~~f~~~~~~~~~~~d 182 (310)
T smart00128 115 VKTGMGGLWGNKGAVAVRFKL----------SDTSFCFVNSHLAAGA--SNVEQRNQDYKTILRALSFPERAELSQFDHD 182 (310)
T ss_pred eeccccceeecCceEEEEEEE----------cCcEEEEEeecccccc--chhhhhHHHHHHHHHhcCCCCCccccccccc
Confidence 21111 1133333343333 6679999999997633 234568888888866552100000 01356
Q ss_pred CEEEeecCCCC
Q 012482 229 PIILCGDWNGS 239 (462)
Q Consensus 229 pvIl~GDFN~~ 239 (462)
.+|++||||-.
T Consensus 183 ~~f~~GDlNyR 193 (310)
T smart00128 183 VVFWFGDLNFR 193 (310)
T ss_pred eEEEecCccee
Confidence 79999999983
No 50
>PTZ00184 calmodulin; Provisional
Probab=98.62 E-value=2.3e-08 Score=86.69 Aligned_cols=71 Identities=23% Similarity=0.424 Sum_probs=63.6
Q ss_pred HHhhhHHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhh
Q 012482 318 QKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRMWNLSC 394 (462)
Q Consensus 318 ~~~~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~~~~ 394 (462)
+.+.+.+++.|..+|.+++ |.|+..||+.+|..+|. .++.+++..+++.+|.+++|.|+|+||+.++....
T Consensus 7 ~~~~~~~~~~F~~~D~~~~-G~i~~~e~~~~l~~~~~-----~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~ 77 (149)
T PTZ00184 7 EEQIAEFKEAFSLFDKDGD-GTITTKELGTVMRSLGQ-----NPTEAELQDMINEVDADGNGTIDFPEFLTLMARKM 77 (149)
T ss_pred HHHHHHHHHHHHHHcCCCC-CcCCHHHHHHHHHHhCC-----CCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhc
Confidence 4556778899999999999 99999999999999884 67788999999999999999999999999887543
No 51
>PTZ00184 calmodulin; Provisional
Probab=98.62 E-value=1.7e-07 Score=81.27 Aligned_cols=64 Identities=33% Similarity=0.556 Sum_probs=59.6
Q ss_pred hHHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHh
Q 012482 322 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRMWN 391 (462)
Q Consensus 322 ~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~ 391 (462)
..++.+|+.+|.+++ |+|+.+||+.+|..+|. .++.++++.++..+|.+++|.|+|+||+.++.
T Consensus 84 ~~~~~~F~~~D~~~~-g~i~~~e~~~~l~~~~~-----~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~ 147 (149)
T PTZ00184 84 EEIKEAFKVFDRDGN-GFISAAELRHVMTNLGE-----KLTDEEVDEMIREADVDGDGQINYEEFVKMMM 147 (149)
T ss_pred HHHHHHHHhhCCCCC-CeEeHHHHHHHHHHHCC-----CCCHHHHHHHHHhcCCCCCCcCcHHHHHHHHh
Confidence 567899999999999 99999999999999884 78999999999999999999999999998875
No 52
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.60 E-value=2.7e-07 Score=82.35 Aligned_cols=66 Identities=23% Similarity=0.271 Sum_probs=60.3
Q ss_pred hhHHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhh
Q 012482 321 SLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRMWNL 392 (462)
Q Consensus 321 ~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~~ 392 (462)
....+++|+.+|+|++ |.|+..||+.+|.+||. .++++-++.|++.+|..++|.|.|++|++.+..
T Consensus 123 i~~Wr~vF~~~D~D~S-G~I~~sEL~~Al~~~Gy-----~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ccv~ 188 (221)
T KOG0037|consen 123 INQWRNVFRTYDRDRS-GTIDSSELRQALTQLGY-----RLSPQFYNLLVRKYDRFGGGRIDFDDFIQCCVV 188 (221)
T ss_pred HHHHHHHHHhcccCCC-CcccHHHHHHHHHHcCc-----CCCHHHHHHHHHHhccccCCceeHHHHHHHHHH
Confidence 3457899999999999 99999999999999995 899999999999999888999999999976553
No 53
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.57 E-value=4e-07 Score=70.95 Aligned_cols=76 Identities=12% Similarity=0.092 Sum_probs=59.6
Q ss_pred HHHhhhHHHHHHhhhccCCCCCcccHHHHHHHHH-HcccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhc
Q 012482 317 LQKASLAENDAFAFFKADNNGDVITHSAFCEALR-QVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRMWNLSCS 395 (462)
Q Consensus 317 l~~~~~~~~~~F~~~D~d~~~G~i~~~el~~~l~-~lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~~~~~ 395 (462)
++.+...+..+|+.+- |+++.+++.||+.+|. +|+-. ....-+++.++++|+.+|.|+||.|+|.||+.++.....
T Consensus 3 LE~ai~~lI~~FhkYa--G~~~tLsk~Elk~Ll~~Elp~~-l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l~~ 79 (91)
T cd05024 3 LEHSMEKMMLTFHKFA--GEKNYLNRDDLQKLMEKEFSEF-LKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGLLI 79 (91)
T ss_pred HHHHHHHHHHHHHHHc--CCCCcCCHHHHHHHHHHHhHHH-HcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH
Confidence 4566778889999997 3338999999999995 44300 112446889999999999999999999999999876543
No 54
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.53 E-value=3.8e-07 Score=75.35 Aligned_cols=82 Identities=21% Similarity=0.287 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCCCCcc
Q 012482 302 QASWAEAVFSIIKCQLQKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVV 381 (462)
Q Consensus 302 ~~~~~~~v~~ii~~~l~~~~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I 381 (462)
|..|-.-+..+.+..-+..-+++.+-.+.||++++ |+|...||+.+|..|| +.++++|+++++.-.. |.+|.|
T Consensus 68 FE~fLpm~q~vaknk~q~t~edfvegLrvFDkeg~-G~i~~aeLRhvLttlG-----ekl~eeEVe~Llag~e-D~nG~i 140 (152)
T KOG0030|consen 68 FEEFLPMYQQVAKNKDQGTYEDFVEGLRVFDKEGN-GTIMGAELRHVLTTLG-----EKLTEEEVEELLAGQE-DSNGCI 140 (152)
T ss_pred HHHHHHHHHHHHhccccCcHHHHHHHHHhhcccCC-cceeHHHHHHHHHHHH-----hhccHHHHHHHHcccc-ccCCcC
Confidence 33333333333443223334778899999999999 9999999999999999 6999999999998664 778999
Q ss_pred cHHHHHHHH
Q 012482 382 NYEEFKRMW 390 (462)
Q Consensus 382 ~~~eF~~~~ 390 (462)
+|+.|++.+
T Consensus 141 ~YE~fVk~i 149 (152)
T KOG0030|consen 141 NYEAFVKHI 149 (152)
T ss_pred cHHHHHHHH
Confidence 999999765
No 55
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.53 E-value=1.9e-07 Score=83.54 Aligned_cols=86 Identities=20% Similarity=0.260 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHhh-hHHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCC--HH----HHHHHHHhhCC
Q 012482 303 ASWAEAVFSIIKCQLQKAS-LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLS--FQ----ETDDLWAQADV 375 (462)
Q Consensus 303 ~~~~~~v~~ii~~~l~~~~-~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~--~~----e~~~l~~~~D~ 375 (462)
.++.+|+..+--..-.... ..++=||+.||.+++ |+|+.+||+.++..+-- ...+ ++ -++.+|.++|.
T Consensus 84 v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~-G~I~reel~~iv~~~~~----~~~~~~~e~~~~i~d~t~~e~D~ 158 (187)
T KOG0034|consen 84 VDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGD-GFISREELKQILRMMVG----ENDDMSDEQLEDIVDKTFEEADT 158 (187)
T ss_pred cCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCC-CcCcHHHHHHHHHHHHc----cCCcchHHHHHHHHHHHHHHhCC
Confidence 4566666554443322222 467789999999999 99999999999988741 1222 33 35667888999
Q ss_pred CCCCcccHHHHHHHHhhh
Q 012482 376 DGNGVVNYEEFKRMWNLS 393 (462)
Q Consensus 376 ~~~g~I~~~eF~~~~~~~ 393 (462)
|+||.|+|+||++++.+.
T Consensus 159 d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 159 DGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred CCCCcCcHHHHHHHHHcC
Confidence 999999999999988754
No 56
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.24 E-value=2.6e-06 Score=83.06 Aligned_cols=72 Identities=21% Similarity=0.293 Sum_probs=63.0
Q ss_pred hhhHHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhh
Q 012482 320 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRMWNLS 393 (462)
Q Consensus 320 ~~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~~~ 393 (462)
....+..+|+.+|.|++ |.||.+||+.+.+-++- +....++++++.++-+.+|.|+||.||++||+..++-.
T Consensus 545 ~ks~LetiF~~iD~D~S-G~isldEF~~a~~l~~s-h~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 545 NKSSLETIFNIIDADNS-GEISLDEFRTAWKLLSS-HMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred chhhHHHHHHHhccCCC-CceeHHHHHHHHHHHHh-hcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 34567889999999999 99999999999988873 34457899999999999999999999999999888643
No 57
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.24 E-value=4.6e-06 Score=81.04 Aligned_cols=70 Identities=17% Similarity=0.312 Sum_probs=64.5
Q ss_pred HHhhhHHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhh
Q 012482 318 QKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRMWNLS 393 (462)
Q Consensus 318 ~~~~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~~~ 393 (462)
...+.++.+.|+.+|.++| |.|+..|+...|+.+|+ ++++++++++++.+|.++++.|+++||...+.-.
T Consensus 78 ~~~E~~l~~~F~~iD~~hd-G~i~~~Ei~~~l~~~gi-----~l~de~~~k~~e~~d~~g~~~I~~~e~rd~~ll~ 147 (463)
T KOG0036|consen 78 DNKELELYRIFQSIDLEHD-GKIDPNEIWRYLKDLGI-----QLSDEKAAKFFEHMDKDGKATIDLEEWRDHLLLY 147 (463)
T ss_pred HHhHHHHHHHHhhhccccC-CccCHHHHHHHHHHhCC-----ccCHHHHHHHHHHhccCCCeeeccHHHHhhhhcC
Confidence 4567789999999999999 99999999999999996 8999999999999999999999999999776543
No 58
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.23 E-value=1.4e-06 Score=52.94 Aligned_cols=28 Identities=36% Similarity=0.694 Sum_probs=26.1
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHhh
Q 012482 365 ETDDLWAQADVDGNGVVNYEEFKRMWNL 392 (462)
Q Consensus 365 e~~~l~~~~D~~~~g~I~~~eF~~~~~~ 392 (462)
|++++++.+|.|+||.|+++||+.+|..
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 6899999999999999999999999864
No 59
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.23 E-value=2.9e-06 Score=70.20 Aligned_cols=71 Identities=18% Similarity=0.244 Sum_probs=63.2
Q ss_pred HhhhHHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCC--CCCcccHHHHHHHHhhhhc
Q 012482 319 KASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVD--GNGVVNYEEFKRMWNLSCS 395 (462)
Q Consensus 319 ~~~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~--~~g~I~~~eF~~~~~~~~~ 395 (462)
.+..+++++|..||..++ |+|+..+...+|+.|| .++++.++.+.+...+.+ +--+|+|++|+-++.....
T Consensus 8 d~~~e~ke~F~lfD~~gD-~ki~~~q~gdvlRalG-----~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vak 80 (152)
T KOG0030|consen 8 DQMEEFKEAFLLFDRTGD-GKISGSQVGDVLRALG-----QNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAK 80 (152)
T ss_pred chHHHHHHHHHHHhccCc-ccccHHHHHHHHHHhc-----CCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHh
Confidence 345789999999999999 9999999999999999 499999999999999877 5579999999999885543
No 60
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.20 E-value=1.8e-06 Score=52.46 Aligned_cols=29 Identities=24% Similarity=0.442 Sum_probs=26.8
Q ss_pred HHHHHHhhhccCCCCCcccHHHHHHHHHHc
Q 012482 323 AENDAFAFFKADNNGDVITHSAFCEALRQV 352 (462)
Q Consensus 323 ~~~~~F~~~D~d~~~G~i~~~el~~~l~~l 352 (462)
+++++|+.+|+|++ |+|+.+||+.+|+.|
T Consensus 1 E~~~~F~~~D~d~d-G~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 1 ELKEAFREFDKDGD-GKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHHHSTTSS-SEEEHHHHHHHHHHT
T ss_pred CHHHHHHHHCCCCC-CcCCHHHHHHHHHhC
Confidence 47899999999999 999999999999875
No 61
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=98.14 E-value=6.8e-06 Score=73.66 Aligned_cols=72 Identities=19% Similarity=0.338 Sum_probs=56.0
Q ss_pred hhhHHHHHHhhhccCCCCCcccHHHHHHHHHHcc-cCC---CC--CCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhh
Q 012482 320 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVN-LAG---LP--YGLSFQETDDLWAQADVDGNGVVNYEEFKRMWNL 392 (462)
Q Consensus 320 ~~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg-~~~---~~--~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~~ 392 (462)
-.+.++.+|+.+|.|++ |+|++.|+-.+++..- +.+ .+ ..-..+-++.+++.+|.|+||.|+++||+.....
T Consensus 98 ~eekl~w~F~lyD~dgd-G~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 98 LEEKLKWAFRLYDLDGD-GYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred HHHHhhhhheeecCCCC-ceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 34667789999999999 9999999988886641 111 11 1224567889999999999999999999977653
No 62
>PLN02964 phosphatidylserine decarboxylase
Probab=98.13 E-value=3.6e-06 Score=88.62 Aligned_cols=66 Identities=12% Similarity=0.261 Sum_probs=41.6
Q ss_pred HHhhhHHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHH---HHHHHHhhCCCCCCcccHHHHHHHHhh
Q 012482 318 QKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQE---TDDLWAQADVDGNGVVNYEEFKRMWNL 392 (462)
Q Consensus 318 ~~~~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e---~~~l~~~~D~~~~g~I~~~eF~~~~~~ 392 (462)
..+.++++++|..+|+|++ |+| |+.+++.+|. ..+++++ +++|++.+|.|++|.|+|+||+.+|..
T Consensus 139 ~kqi~elkeaF~lfD~dgd-G~i----Lg~ilrslG~----~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~ 207 (644)
T PLN02964 139 TQEPESACESFDLLDPSSS-NKV----VGSIFVSCSI----EDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKA 207 (644)
T ss_pred HHHHHHHHHHHHHHCCCCC-CcC----HHHHHHHhCC----CCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHH
Confidence 4455666666777777776 665 6666666662 1445444 566666677777777777777666653
No 63
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.12 E-value=5.4e-06 Score=80.52 Aligned_cols=99 Identities=16% Similarity=0.297 Sum_probs=75.8
Q ss_pred HHhhhHHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhc--
Q 012482 318 QKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRMWNLSCS-- 395 (462)
Q Consensus 318 ~~~~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~~~~~-- 395 (462)
.+...+++.+|+.||.+++ |+|+..+|.++|..++. + ....+-++.+++.+|.|.||.+||.||.+++.....
T Consensus 10 ~er~~r~~~lf~~lD~~~~-g~~d~~~l~k~~~~l~~---~-~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~~l 84 (463)
T KOG0036|consen 10 EERDIRIRCLFKELDSKND-GQVDLDQLEKGLEKLDH---P-KPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKELEL 84 (463)
T ss_pred HHHHHHHHHHHHHhccCCC-CceeHHHHHHHHHhcCC---C-CCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhHHHH
Confidence 3455678899999999999 99999999999999984 2 467788889999999999999999999999885433
Q ss_pred ----cccccccCcccccccccccccccceE
Q 012482 396 ----AQIENNCNDNMEDSKDCSEKEILGFA 421 (462)
Q Consensus 396 ----~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (462)
...+.+..+.+.-.|........|..
T Consensus 85 ~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~ 114 (463)
T KOG0036|consen 85 YRIFQSIDLEHDGKIDPNEIWRYLKDLGIQ 114 (463)
T ss_pred HHHHhhhccccCCccCHHHHHHHHHHhCCc
Confidence 34455556665544444444444443
No 64
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=98.06 E-value=1.7e-05 Score=66.07 Aligned_cols=66 Identities=24% Similarity=0.438 Sum_probs=56.4
Q ss_pred HHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHH----HHHHHhhCCCCCCcccHHHHHHHHhhh
Q 012482 323 AENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQET----DDLWAQADVDGNGVVNYEEFKRMWNLS 393 (462)
Q Consensus 323 ~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~----~~l~~~~D~~~~g~I~~~eF~~~~~~~ 393 (462)
...-||+.+|-|++ ++|...+|.+++..|-- ..++++|+ ++++.+.|.||||+++|.||..++.+.
T Consensus 109 K~~YAFkIYDfd~D-~~i~~~DL~~~l~~lTr----~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i~ra 178 (189)
T KOG0038|consen 109 KAKYAFKIYDFDGD-EFIGHDDLEKTLTSLTR----DELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVILRA 178 (189)
T ss_pred hhhheeEEeecCCC-CcccHHHHHHHHHHHhh----ccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhC
Confidence 34578999999999 99999999999998852 35888886 457788999999999999999988764
No 65
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.05 E-value=5.1e-06 Score=51.50 Aligned_cols=30 Identities=23% Similarity=0.434 Sum_probs=26.7
Q ss_pred HHHHHHhhhccCCCCCcccHHHHHHHHH-Hcc
Q 012482 323 AENDAFAFFKADNNGDVITHSAFCEALR-QVN 353 (462)
Q Consensus 323 ~~~~~F~~~D~d~~~G~i~~~el~~~l~-~lg 353 (462)
+++++|+.+|.|++ |+|+.+||+.+|+ .+|
T Consensus 1 ~l~~~F~~~D~d~d-G~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGD-GFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSS-SEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCC-CcCcHHHHHHHHHHhcC
Confidence 47899999999999 9999999999999 676
No 66
>PLN02964 phosphatidylserine decarboxylase
Probab=97.98 E-value=2e-05 Score=83.22 Aligned_cols=65 Identities=20% Similarity=0.429 Sum_probs=60.1
Q ss_pred HHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhh
Q 012482 323 AENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRMWNLS 393 (462)
Q Consensus 323 ~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~~~ 393 (462)
.++++|+.+|.|++ |.|+.+||..+|..++ ...+++++.++++.+|.|++|.|+++||.++|...
T Consensus 180 fi~~mf~~~D~Dgd-G~IdfdEFl~lL~~lg-----~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 180 FARRILAIVDYDED-GQLSFSEFSDLIKAFG-----NLVAANKKEELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred HHHHHHHHhCCCCC-CeEcHHHHHHHHHHhc-----cCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 37899999999999 9999999999999988 36789999999999999999999999999998873
No 67
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.78 E-value=6.7e-05 Score=60.62 Aligned_cols=65 Identities=20% Similarity=0.362 Sum_probs=55.9
Q ss_pred HhhhHHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhh
Q 012482 319 KASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRMWNL 392 (462)
Q Consensus 319 ~~~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~~ 392 (462)
.+......+|..+|. ++ |.|+.++.+.+|..-| ++.+.+.+|+...|.|++|.++++||+-.|.-
T Consensus 7 ~e~~~y~~~F~~l~~-~~-g~isg~~a~~~f~~S~-------L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 7 EEKQKYDQIFQSLDP-QD-GKISGDQAREFFMKSG-------LPRDVLAQIWNLADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp CHHHHHHHHHHCTSS-ST-TEEEHHHHHHHHHHTT-------SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CC-CeEeHHHHHHHHHHcC-------CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHH
Confidence 345677899999985 67 9999999999999876 68899999999999999999999999976653
No 68
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=97.60 E-value=0.00011 Score=65.95 Aligned_cols=67 Identities=19% Similarity=0.228 Sum_probs=56.2
Q ss_pred hHHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhh
Q 012482 322 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRMWNLSC 394 (462)
Q Consensus 322 ~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~~~~ 394 (462)
.-...+|+.||.|++ |.|+..||-.+|..+- ..-.++.++-.++.+|.||+|.|+++|++.++....
T Consensus 64 ~y~~~vF~~fD~~~d-g~i~F~Efi~als~~~-----rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~ 130 (193)
T KOG0044|consen 64 KYAELVFRTFDKNKD-GTIDFLEFICALSLTS-----RGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIY 130 (193)
T ss_pred HHHHHHHHHhcccCC-CCcCHHHHHHHHHHHc-----CCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHH
Confidence 345589999999999 9999999888887654 245677888889999999999999999998887433
No 69
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.59 E-value=0.00021 Score=48.97 Aligned_cols=49 Identities=16% Similarity=0.329 Sum_probs=40.8
Q ss_pred cccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhh
Q 012482 339 VITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRMWNL 392 (462)
Q Consensus 339 ~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~~ 392 (462)
+++.+|++.+|+.+++ .++++-+..+++++|.+++|.++.+||..+++.
T Consensus 1 kmsf~Evk~lLk~~NI-----~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNI-----EMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp EBEHHHHHHHHHHTT---------HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcc-----CcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 3688999999999997 899999999999999999999999999988764
No 70
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=97.58 E-value=0.00018 Score=72.12 Aligned_cols=75 Identities=20% Similarity=0.274 Sum_probs=62.9
Q ss_pred HHhhhHHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhcc
Q 012482 318 QKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRMWNLSCSA 396 (462)
Q Consensus 318 ~~~~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~~~~~~ 396 (462)
+....++++.|..+| |++ |+|+..||..++...+.. ...+..+|+++++...+.|.+|.|+|+||+.++....+.
T Consensus 15 q~El~~l~~kF~~~d-~~~-G~v~~~~l~~~f~k~~~~--~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~s~ 89 (627)
T KOG0046|consen 15 QEELRELKEKFNKLD-DQK-GYVTVYELPDAFKKAKLP--LGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLKSK 89 (627)
T ss_pred HHHHHHHHHHHHhhc-CCC-CeeehHHhHHHHHHhccc--ccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhhhh
Confidence 445578889999999 999 999999999999998741 123458999999999999999999999999987755543
No 71
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.56 E-value=8.5e-05 Score=43.40 Aligned_cols=25 Identities=28% Similarity=0.458 Sum_probs=22.6
Q ss_pred HHHHHhhhccCCCCCcccHHHHHHHH
Q 012482 324 ENDAFAFFKADNNGDVITHSAFCEAL 349 (462)
Q Consensus 324 ~~~~F~~~D~d~~~G~i~~~el~~~l 349 (462)
++++|+.+|.|++ |.||.+||++++
T Consensus 1 l~~~F~~~D~d~D-G~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGD-GKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSS-SEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCC-CcCCHHHHHHHC
Confidence 4679999999999 999999999864
No 72
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.50 E-value=0.00012 Score=42.75 Aligned_cols=25 Identities=40% Similarity=0.791 Sum_probs=22.5
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHH
Q 012482 366 TDDLWAQADVDGNGVVNYEEFKRMW 390 (462)
Q Consensus 366 ~~~l~~~~D~~~~g~I~~~eF~~~~ 390 (462)
++++++.+|.|+||.|+++||.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 5678999999999999999999864
No 73
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.48 E-value=0.00038 Score=69.74 Aligned_cols=53 Identities=19% Similarity=0.408 Sum_probs=47.0
Q ss_pred hHHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhh
Q 012482 322 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRMWNLS 393 (462)
Q Consensus 322 ~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~~~ 393 (462)
..++.+|+.+|.|++ |.|+.+||. + ++.||..+|.|+||.|+++||...+...
T Consensus 334 ~~l~~aF~~~D~dgd-G~Is~~E~~------~------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 334 HAAQEIFRLYDLDGD-GFITREEWL------G------------SDAVFDALDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred HHHHHHHHHhCCCCC-CcCcHHHHH------H------------HHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 567899999999999 999999983 2 4689999999999999999999988654
No 74
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.0013 Score=70.38 Aligned_cols=67 Identities=21% Similarity=0.189 Sum_probs=39.0
Q ss_pred CCcEEEEEEeeccCCCCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEeecCCCC---CcchhhHHHHh
Q 012482 182 GQQEILIVNTHLLFPHDSSLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGS---KRGHVYKFLRS 250 (462)
Q Consensus 182 ~g~~~~v~ntHL~~~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~---p~s~~~~~l~~ 250 (462)
....|+++|.||.++. ..-..|..-...|.+-|.=-....=..+..|++|||||-. +.+.+.+.++.
T Consensus 671 ~~TsfCFv~SHlAAG~--snv~ERn~DY~tI~r~l~Fp~Gr~I~~HD~ifW~GDFNYRI~l~nEEVr~~v~~ 740 (1080)
T KOG0566|consen 671 HATSFCFVCSHLAAGQ--SNVEERNEDYKTIARKLRFPRGRMIFSHDYIFWLGDFNYRIDLSNEEVRRLVRN 740 (1080)
T ss_pred ccccEEEEeccccccc--chHhhhhhhHHHHHHhccccCCccccCCceEEEecccceeecCCHHHHHHHHHh
Confidence 5578999999996532 2234455556666554431111101235679999999965 34445555544
No 75
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.38 E-value=0.00013 Score=60.14 Aligned_cols=61 Identities=13% Similarity=0.210 Sum_probs=45.5
Q ss_pred hhhHHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHH
Q 012482 320 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKR 388 (462)
Q Consensus 320 ~~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~ 388 (462)
....+..-|..+|.|++ |.|+..||+.+...|. ..+..++.+++.+|.|+||.|++.|+..
T Consensus 52 ~~~~~~W~F~~LD~n~d-~~L~~~El~~l~~~l~-------~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 52 CKRVVHWKFCQLDRNKD-GVLDRSELKPLRRPLM-------PPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GHHHHHHHHHHH--T-S-SEE-TTTTGGGGSTTS-------TTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhHhhhcCCCC-CccCHHHHHHHHHHHh-------hhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 34566677999999999 9999999998765442 4566799999999999999999999864
No 76
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.00074 Score=64.19 Aligned_cols=65 Identities=17% Similarity=0.207 Sum_probs=50.5
Q ss_pred HHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhh
Q 012482 323 AENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRMWNL 392 (462)
Q Consensus 323 ~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~~ 392 (462)
.-++-|+.-|.|++ |.++.+||...|.=--. ..+.+--|.+-|...|+|+||.|+++||+.=|-.
T Consensus 164 rDe~rFk~AD~d~d-g~lt~EEF~aFLHPEe~----p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~ 228 (325)
T KOG4223|consen 164 RDEERFKAADQDGD-GSLTLEEFTAFLHPEEH----PHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYS 228 (325)
T ss_pred HHHHHHhhcccCCC-CcccHHHHHhccChhhc----chHHHHHHHHHHhhcccCCCCceeHHHHHhHHhh
Confidence 34567999999999 99999999988721110 1345566788889999999999999999965543
No 77
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.12 E-value=0.0014 Score=52.46 Aligned_cols=63 Identities=25% Similarity=0.450 Sum_probs=47.0
Q ss_pred HHHhhhccCCCCCcccHHHHHHHHHHccc---CCC-CCC-CCHHHHHHHHH----hhCCCCCCcccHHHHHHH
Q 012482 326 DAFAFFKADNNGDVITHSAFCEALRQVNL---AGL-PYG-LSFQETDDLWA----QADVDGNGVVNYEEFKRM 389 (462)
Q Consensus 326 ~~F~~~D~d~~~G~i~~~el~~~l~~lg~---~~~-~~~-~~~~e~~~l~~----~~D~~~~g~I~~~eF~~~ 389 (462)
-.|++.|-|++ ++|+--||-+++.-.-- .|+ +.+ .++.|+..|+. .-|.|+||.|+|.||++-
T Consensus 71 HYF~MHDldkn-n~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 71 HYFSMHDLDKN-NFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhccCcC-CcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 56899999999 99999999999864421 122 333 45667766664 458899999999999863
No 78
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B.
Probab=97.03 E-value=0.00093 Score=55.28 Aligned_cols=87 Identities=20% Similarity=0.298 Sum_probs=36.9
Q ss_pred EEEEEeeccCCCCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEeecCCCCCc------------chhhHHHHhCCC
Q 012482 186 ILIVNTHLLFPHDSSLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKR------------GHVYKFLRSQGF 253 (462)
Q Consensus 186 ~~v~ntHL~~~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~------------s~~~~~l~~~g~ 253 (462)
|.|++++. ||.. ....+.+.|.++.... +..++||+||||.... ....+++.+.++
T Consensus 1 i~i~~vY~--pp~~--------~~~~~~~~l~~~~~~~--~~~~~Ii~GDFN~~~~~w~~~~~~~~~~~~l~~~~~~~~l 68 (119)
T PF14529_consen 1 ITIISVYA--PPSS--------EREEFFDQLRQLLKNL--PPAPIIIGGDFNAHHPNWDSSNTNSRRGEQLLDWLDSHNL 68 (119)
T ss_dssp EEEEEEE----TTS---------CHHHHHHHHHHHHCC--TTSSEEEEEE-----GGGT-SCHHHHHHHHHHHHHHHCTE
T ss_pred CEEEEEEC--CCCc--------cHHHHHHHHHHHHHhC--CCCCEEEEeECCCCchhhhhccccchhHHHHHHHhhhcee
Confidence 46778776 2221 2334444455554432 1228999999998421 112233333333
Q ss_pred ccccccccccCCCCCCCcccccccCcCCCcccccceeccCCCC
Q 012482 254 VSSYDVAHQYTDGDADAHKWVSHRNHRGNICGVDFIWLRNPNQ 296 (462)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~iD~If~s~~~~ 296 (462)
... +.. ...+||..... ..+||++|.+.+..
T Consensus 69 ~~~----~~~----~~~~T~~~~~~----~s~iD~~~~s~~~~ 99 (119)
T PF14529_consen 69 VDL----NPP----GRPPTFISNSH----GSRIDLILTSDNLL 99 (119)
T ss_dssp EE-------T----T---SEEECCC----EE--EEEEEECCGC
T ss_pred eee----ecC----CCCCcccCCCC----CceEEEEEECChHH
Confidence 321 110 12245554332 45899999997744
No 79
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=96.96 E-value=0.001 Score=41.03 Aligned_cols=28 Identities=21% Similarity=0.538 Sum_probs=24.6
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHhh
Q 012482 365 ETDDLWAQADVDGNGVVNYEEFKRMWNL 392 (462)
Q Consensus 365 e~~~l~~~~D~~~~g~I~~~eF~~~~~~ 392 (462)
+++++++.+|.|++|.|+++||..++..
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~ 28 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRK 28 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 5788999999999999999999999873
No 80
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=96.93 E-value=0.002 Score=71.76 Aligned_cols=69 Identities=17% Similarity=0.290 Sum_probs=60.7
Q ss_pred hHHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCC-------CHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhh
Q 012482 322 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGL-------SFQETDDLWAQADVDGNGVVNYEEFKRMWNLSC 394 (462)
Q Consensus 322 ~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~-------~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~~~~ 394 (462)
.++.-+|+.||++.+ |.++.++|+.+|+.+|. .+ ++.+++++|..+|++.+|.|+..||+++|....
T Consensus 2253 ~EFs~~fkhFDkek~-G~Ldhq~F~sCLrslgY-----~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~E 2326 (2399)
T KOG0040|consen 2253 KEFSMMFKHFDKEKN-GRLDHQHFKSCLRSLGY-----DLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISKE 2326 (2399)
T ss_pred HHHHHHHHHhchhhc-cCCcHHHHHHHHHhcCC-----CCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhcc
Confidence 466788999999999 99999999999999994 44 234899999999999999999999999998766
Q ss_pred cc
Q 012482 395 SA 396 (462)
Q Consensus 395 ~~ 396 (462)
.+
T Consensus 2327 Te 2328 (2399)
T KOG0040|consen 2327 TE 2328 (2399)
T ss_pred cc
Confidence 54
No 81
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=96.31 E-value=0.0031 Score=62.18 Aligned_cols=100 Identities=19% Similarity=0.202 Sum_probs=61.5
Q ss_pred ccceeccCCCCCCChhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhhccCCCCCcccHHHHHHHHHHc------ccCCCCC
Q 012482 286 VDFIWLRNPNQSRKPLQASWAEAVFSIIKCQLQKASLAENDAFAFFKADNNGDVITHSAFCEALRQV------NLAGLPY 359 (462)
Q Consensus 286 iD~If~s~~~~~~~~~~~~~~~~v~~ii~~~l~~~~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~l------g~~~~~~ 359 (462)
=|+||+. -.....++|.+.++.+.- +..-...++=||++||.||+ |.|+++||....+-+ |.. |-.
T Consensus 203 ~~siF~~----lg~~GLIsfSdYiFLlTl--LS~p~~~F~IAFKMFD~dgn-G~IdkeEF~~v~~li~sQ~~~g~~-hrd 274 (489)
T KOG2643|consen 203 GDSIFYK----LGESGLISFSDYIFLLTL--LSIPERNFRIAFKMFDLDGN-GEIDKEEFETVQQLIRSQTSVGVR-HRD 274 (489)
T ss_pred CCeeEEE----cCCCCeeeHHHHHHHHHH--HccCcccceeeeeeeecCCC-CcccHHHHHHHHHHHHhcccccee-ccc
Confidence 3566664 223334466666643322 23334567789999999999 999999999877332 221 100
Q ss_pred CCC-----HHHHHH--HHHhhCCCCCCcccHHHHHHHHhhh
Q 012482 360 GLS-----FQETDD--LWAQADVDGNGVVNYEEFKRMWNLS 393 (462)
Q Consensus 360 ~~~-----~~e~~~--l~~~~D~~~~g~I~~~eF~~~~~~~ 393 (462)
.++ .-++.. ...-|..+++++++++||++.+...
T Consensus 275 ~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e~L 315 (489)
T KOG2643|consen 275 HFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQENL 315 (489)
T ss_pred CccccceehhhhhhhHHHHhhccCCCccccHHHHHHHHHHH
Confidence 111 112222 3345788999999999999887743
No 82
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=96.19 E-value=0.011 Score=53.83 Aligned_cols=66 Identities=15% Similarity=0.250 Sum_probs=48.1
Q ss_pred hHHHHHHhhhccCCCCCcccHHHHHHHHHH-cccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHh
Q 012482 322 LAENDAFAFFKADNNGDVITHSAFCEALRQ-VNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRMWN 391 (462)
Q Consensus 322 ~~~~~~F~~~D~d~~~G~i~~~el~~~l~~-lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~ 391 (462)
..+..+|...|.|.+ |+|+..|+++-++. ..- | ..-..++-+-.++..|+|+||.|+++||.--+.
T Consensus 101 rklmviFsKvDVNtD-rkisAkEmqrwImektaE--H-fqeameeSkthFraVDpdgDGhvsWdEykvkFl 167 (362)
T KOG4251|consen 101 RKLMVIFSKVDVNTD-RKISAKEMQRWIMEKTAE--H-FQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFL 167 (362)
T ss_pred HHHHHHHhhcccCcc-ccccHHHHHHHHHHHHHH--H-HHHHHhhhhhheeeeCCCCCCceehhhhhhHHH
Confidence 457789999999999 99999999987754 210 0 011223344467778999999999999985554
No 83
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.08 E-value=0.0075 Score=35.27 Aligned_cols=29 Identities=24% Similarity=0.488 Sum_probs=25.5
Q ss_pred HHHHHHhhhccCCCCCcccHHHHHHHHHHc
Q 012482 323 AENDAFAFFKADNNGDVITHSAFCEALRQV 352 (462)
Q Consensus 323 ~~~~~F~~~D~d~~~G~i~~~el~~~l~~l 352 (462)
+++++|+.+|.+++ |.|+..||..+++.+
T Consensus 1 ~~~~~f~~~d~~~~-g~i~~~e~~~~~~~~ 29 (29)
T smart00054 1 ELKEAFRLFDKDGD-GKIDFEEFKDLLKAL 29 (29)
T ss_pred CHHHHHHHHCCCCC-CcEeHHHHHHHHHhC
Confidence 36789999999999 999999999998753
No 84
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=96.07 E-value=0.016 Score=52.09 Aligned_cols=73 Identities=16% Similarity=0.241 Sum_probs=50.4
Q ss_pred hhHHHHHHhhhccCCCCCc-ccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhcccc
Q 012482 321 SLAENDAFAFFKADNNGDV-ITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRMWNLSCSAQI 398 (462)
Q Consensus 321 ~~~~~~~F~~~D~d~~~G~-i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~~~~~~~~ 398 (462)
++-..++|+.||.+++ |. |+.++|-.+|..+-. ....++.++-.++.+|.+++|.|+.+|+.+++........
T Consensus 65 Np~~~rI~~~f~~~~~-~~~v~F~~Fv~~ls~f~~----~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~ 138 (187)
T KOG0034|consen 65 NPLADRIIDRFDTDGN-GDPVDFEEFVRLLSVFSP----KASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGEND 138 (187)
T ss_pred CcHHHHHHHHHhccCC-CCccCHHHHHHHHhhhcC----CccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCC
Confidence 3444567777777777 66 777777777766542 2233447777888888888888888888888876665433
No 85
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.07 E-value=0.0069 Score=35.44 Aligned_cols=28 Identities=32% Similarity=0.643 Sum_probs=24.9
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHhh
Q 012482 365 ETDDLWAQADVDGNGVVNYEEFKRMWNL 392 (462)
Q Consensus 365 e~~~l~~~~D~~~~g~I~~~eF~~~~~~ 392 (462)
+++.+++.+|.+++|.|++.||..++..
T Consensus 1 ~~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 1 ELKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred CHHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 4678999999999999999999998864
No 86
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.96 E-value=0.009 Score=56.98 Aligned_cols=68 Identities=15% Similarity=0.243 Sum_probs=56.2
Q ss_pred HHhhhHHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHh
Q 012482 318 QKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRMWN 391 (462)
Q Consensus 318 ~~~~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~ 391 (462)
.+....+..+|..+|.+++ |+|+..||+.-+...- ...-.+++.+-+...|.|.||.|+|+|++..+-
T Consensus 73 ee~~~rl~~l~~~iD~~~D-gfv~~~El~~wi~~s~-----k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~ 140 (325)
T KOG4223|consen 73 EESQERLGKLVPKIDSDSD-GFVTESELKAWIMQSQ-----KKYVVEEAARRWDEYDKNKDGFITWEEYLPQTY 140 (325)
T ss_pred chhHHHHHHHHhhhcCCCC-CceeHHHHHHHHHHHH-----HHHHHHHHHHHHHHhccCccceeeHHHhhhhhh
Confidence 4455788899999999999 9999999999886643 244557777788899999999999999997665
No 87
>KOG1294 consensus Apurinic/apyrimidinic endonuclease and related enzymes [Replication, recombination and repair]
Probab=95.69 E-value=0.034 Score=54.54 Aligned_cols=108 Identities=20% Similarity=0.311 Sum_probs=55.8
Q ss_pred cEEEEEEeeccCCCCCCchhHHHHHH--HHHHHHHHHHHhhcC---CCCCCEEEeecCCCCCcchh--------------
Q 012482 184 QEILIVNTHLLFPHDSSLSVVRLHQV--YKILQYLELYQTENK---LNHIPIILCGDWNGSKRGHV-------------- 244 (462)
Q Consensus 184 ~~~~v~ntHL~~~~~~~~~~~R~~Q~--~~l~~~l~~~~~~~~---~~~~pvIl~GDFN~~p~s~~-------------- 244 (462)
..+.++++|+. +.....+.+.-. ..+...++....+.. .-..|+++|||.|..+...-
T Consensus 167 e~~~l~~~y~p---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~v~~gd~nvs~~~i~~~~~~~~~~~~~~~ 243 (335)
T KOG1294|consen 167 EIFILINTYVP---NIGGGLVNLVYRILDRWDKEIEEKRKKQSSSKNLKAPVVICGDLNVSHEEIDPSKPLVSPAGNTLS 243 (335)
T ss_pred cceeeccccCc---ccccccchhhhhhhhhhHHHHHHHhhhccccccccCcceeccccccchhhccccccccccccCCcC
Confidence 46788898883 222223333222 333344444333321 12358999999998753211
Q ss_pred -----------h-HHHHhCC-CccccccccccCCCCCCCcccccccCcC--CCcccccceeccCCCC
Q 012482 245 -----------Y-KFLRSQG-FVSSYDVAHQYTDGDADAHKWVSHRNHR--GNICGVDFIWLRNPNQ 296 (462)
Q Consensus 245 -----------~-~~l~~~g-~~~~~~~~~~~~~~~~~~~~w~~~~~~~--~~~~~iD~If~s~~~~ 296 (462)
+ ..+...| ++|+|...+.-.. .....|..-.+.+ +...++||+.+++|..
T Consensus 244 ~~~~t~e~R~~~~~~~~~~~~~iDt~r~~~~~~~--~~~t~Wk~~~~~r~~~~~~r~dy~~Vsk~~~ 308 (335)
T KOG1294|consen 244 NAGFTPEERDSFFAELLEKGPLIDTYRELHKDQK--KAYTFWKYMPNGRQRGHGERCDYILVSKPGP 308 (335)
T ss_pred CCCCCHHHhhhHHHhhccCCcceeehhhhcCCcc--ccccchhhccccccCCCCCceeEEEecCcCC
Confidence 1 2222334 5666654433211 1334566544422 2235799999998843
No 88
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=95.16 E-value=0.041 Score=42.49 Aligned_cols=67 Identities=18% Similarity=0.259 Sum_probs=53.1
Q ss_pred HHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCC----CCCcccHHHHHHHHhhhh
Q 012482 323 AENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVD----GNGVVNYEEFKRMWNLSC 394 (462)
Q Consensus 323 ~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~----~~g~I~~~eF~~~~~~~~ 394 (462)
++..+|..+-. +. +.|+.++|+..|+.-.- ....+.++++++|..+..+ ..+.+++++|..+|...-
T Consensus 1 ei~~if~~ys~-~~-~~mt~~~f~~FL~~eQ~---~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~ 71 (83)
T PF09279_consen 1 EIEEIFRKYSS-DK-EYMTAEEFRRFLREEQG---EPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDE 71 (83)
T ss_dssp HHHHHHHHHCT-TS-SSEEHHHHHHHHHHTSS----TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTT
T ss_pred CHHHHHHHHhC-CC-CcCCHHHHHHHHHHHhc---cccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCc
Confidence 46789999955 66 89999999999976541 1246899999999998654 479999999999996543
No 89
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=94.87 E-value=0.054 Score=59.96 Aligned_cols=60 Identities=25% Similarity=0.457 Sum_probs=53.1
Q ss_pred HHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHh
Q 012482 325 NDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRMWN 391 (462)
Q Consensus 325 ~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~ 391 (462)
.+.|+.+|+||. |-|++.||.++|..-. ..+..|++-++.-...|.+...+|++|+.-+.
T Consensus 4060 sdtfkeydpdgk-giiskkdf~kame~~k------~ytqse~dfllscae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4060 SDTFKEYDPDGK-GIISKKDFHKAMEGHK------HYTQSEIDFLLSCAEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred cccchhcCCCCC-ccccHHHHHHHHhccc------cchhHHHHHHHHhhccCccccccHHHHHHHhc
Confidence 467889999999 9999999999997644 68899999999999999999999999986554
No 90
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=94.61 E-value=0.048 Score=38.14 Aligned_cols=32 Identities=16% Similarity=0.306 Sum_probs=28.0
Q ss_pred HhhhHHHHHHhhhccCCCCCcccHHHHHHHHHH
Q 012482 319 KASLAENDAFAFFKADNNGDVITHSAFCEALRQ 351 (462)
Q Consensus 319 ~~~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~ 351 (462)
-...++..+|..+|.|++ |+|+.+||..+|..
T Consensus 22 ~s~~e~~~l~~~~D~~~~-G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 22 LSEEEVDRLFREFDTDGD-GYISFDEFISMMQR 53 (54)
T ss_dssp SCHHHHHHHHHHHTTSSS-SSEEHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcccCCC-CCCCHHHHHHHHHh
Confidence 344668999999999999 99999999999864
No 91
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=94.25 E-value=0.25 Score=51.70 Aligned_cols=58 Identities=24% Similarity=0.232 Sum_probs=34.9
Q ss_pred CCcEEEEEEeeccCCCCCCchhHHHHHHHHHHHHHH--HHHhhc----CCCCCCEEEeecCCCC
Q 012482 182 GQQEILIVNTHLLFPHDSSLSVVRLHQVYKILQYLE--LYQTEN----KLNHIPIILCGDWNGS 239 (462)
Q Consensus 182 ~g~~~~v~ntHL~~~~~~~~~~~R~~Q~~~l~~~l~--~~~~~~----~~~~~pvIl~GDFN~~ 239 (462)
.+..|+++|+||.++........|..+...|+..+. ...... -.....+|++||||--
T Consensus 418 ~~Ts~cFVn~HLAAg~~~~~~~rRN~D~~~I~~~l~F~~~~~~~~~~~I~dhD~vFWlGDLNYR 481 (621)
T PLN03191 418 FQSRLCFVCSHLTSGHKDGAEQRRNADVYEIIRRTRFSSVLDTDQPQTIPSHDQIFWFGDLNYR 481 (621)
T ss_pred cCcEEEEEEeccccccccchHHHHHHHHHHHHhccccCcccccCCCccccccceEEEecCcccc
Confidence 567999999999775432223346677777765431 000000 0123469999999974
No 92
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=94.09 E-value=0.21 Score=49.71 Aligned_cols=78 Identities=18% Similarity=0.403 Sum_probs=55.6
Q ss_pred HHHHHhhhHHHHHHhhhccCCCCCcccHHHHHHHHHHc-ccCCCC----------------------------CCCC---
Q 012482 315 CQLQKASLAENDAFAFFKADNNGDVITHSAFCEALRQV-NLAGLP----------------------------YGLS--- 362 (462)
Q Consensus 315 ~~l~~~~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~l-g~~~~~----------------------------~~~~--- 362 (462)
..+.....++.+.|+.+|.+++ |+|+...-..+++.. |+ +.| ..+.
T Consensus 457 erl~s~~sdL~~eF~~~D~~ks-G~lsis~Wa~~mE~i~~L-~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea 534 (631)
T KOG0377|consen 457 ERLRSHRSDLEDEFRKYDPKKS-GKLSISHWAKCMENITGL-NLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEA 534 (631)
T ss_pred HHHHhhhhHHHHHHHhcChhhc-CeeeHHHHHHHHHHHhcC-CCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHH
Confidence 3344455678899999999999 999999988888653 21 000 0000
Q ss_pred -----------HHHHHHHHHhhCCCCCCcccHHHHHHHHhhhh
Q 012482 363 -----------FQETDDLWAQADVDGNGVVNYEEFKRMWNLSC 394 (462)
Q Consensus 363 -----------~~e~~~l~~~~D~~~~g~I~~~eF~~~~~~~~ 394 (462)
...++.+++.+|.|++|.|+.+||.++|.-..
T Consensus 535 ~~slvetLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~ 577 (631)
T KOG0377|consen 535 GSSLVETLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLS 577 (631)
T ss_pred HhHHHHHHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHH
Confidence 11245688889999999999999998887443
No 93
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=93.81 E-value=0.08 Score=52.98 Aligned_cols=108 Identities=9% Similarity=0.045 Sum_probs=70.5
Q ss_pred ccCcCCCcccccceec---cCC--CCCCChhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhhccCCCCCcccHHHHHHHHH
Q 012482 276 HRNHRGNICGVDFIWL---RNP--NQSRKPLQASWAEAVFSIIKCQLQKASLAENDAFAFFKADNNGDVITHSAFCEALR 350 (462)
Q Consensus 276 ~~~~~~~~~~iD~If~---s~~--~~~~~~~~~~~~~~v~~ii~~~l~~~~~~~~~~F~~~D~d~~~G~i~~~el~~~l~ 350 (462)
+.++.....-||-||- ++- ...++-.|..|.-|+.+..+ +...+.+.-+|+.+|.+++ |.|+..||+...+
T Consensus 303 y~d~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~---k~t~~SleYwFrclDld~~-G~Lt~~el~~fye 378 (493)
T KOG2562|consen 303 YGDHTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEED---KDTPASLEYWFRCLDLDGD-GILTLNELRYFYE 378 (493)
T ss_pred HhccchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhcc---CCCccchhhheeeeeccCC-CcccHHHHHHHHH
Confidence 3444444445888887 221 22334444444444444444 6667889999999999999 9999999987664
Q ss_pred Hc----ccCCCCCCCC-HHHHHHHHHhhCCCCCCcccHHHHHH
Q 012482 351 QV----NLAGLPYGLS-FQETDDLWAQADVDGNGVVNYEEFKR 388 (462)
Q Consensus 351 ~l----g~~~~~~~~~-~~e~~~l~~~~D~~~~g~I~~~eF~~ 388 (462)
.. -. ...+.++ ++-+.+|+..+.+...+.|+..+|+.
T Consensus 379 eq~~rm~~-~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 379 EQLQRMEC-MGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred HHHHHHHh-cCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 32 11 1123333 45566777777777789999999984
No 94
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=93.74 E-value=0.23 Score=47.09 Aligned_cols=60 Identities=22% Similarity=0.311 Sum_probs=36.6
Q ss_pred CCcEEEEEEeeccCCCC---------CCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEeecCCCCCcchhh
Q 012482 182 GQQEILIVNTHLLFPHD---------SSLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGHVY 245 (462)
Q Consensus 182 ~g~~~~v~ntHL~~~~~---------~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~~~ 245 (462)
.+..|.++|+||..... +.+...|..-+..++..+.... .+..|+++.||||---+...|
T Consensus 78 ~~t~fdfVNiHLFHDaSNl~A~~tSPSiYS~~RqrAL~~iL~r~~~~~----~~~~~lF~fGDfNyRld~~~~ 146 (356)
T PTZ00312 78 GTVVVNVLNVHLYNDDDNRVAAASSPSLYTGQRQEALLEAIAECSAFI----SPSDPLFIFGDFNVRLDGHNL 146 (356)
T ss_pred CCEEEEEEEeeccCCcchhhHHhcCCchhHHHHHHHHHHHHHHHhhcc----CCCCcEEEeccceeeeccccH
Confidence 67789999999965211 0122334444444554444332 347899999999986554433
No 95
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=93.41 E-value=0.097 Score=38.16 Aligned_cols=30 Identities=23% Similarity=0.410 Sum_probs=27.3
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHHHhhhhc
Q 012482 366 TDDLWAQADVDGNGVVNYEEFKRMWNLSCS 395 (462)
Q Consensus 366 ~~~l~~~~D~~~~g~I~~~eF~~~~~~~~~ 395 (462)
++++++.+|.|++|.|+.+||..++.....
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~ 31 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGR 31 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTS
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcc
Confidence 688999999999999999999999987664
No 96
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.66 E-value=0.15 Score=53.90 Aligned_cols=63 Identities=22% Similarity=0.361 Sum_probs=55.3
Q ss_pred hhhHHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHH
Q 012482 320 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRMW 390 (462)
Q Consensus 320 ~~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~ 390 (462)
+....+++|+.+|+..+ |++|-..-+.+|..-+ ++...+..|+..-|.|+||+++.+||+-.|
T Consensus 193 ~klKY~QlFNa~Dktrs-G~Lsg~qaR~aL~qS~-------Lpq~~LA~IW~LsDvd~DGkL~~dEfilam 255 (1118)
T KOG1029|consen 193 NKLKYRQLFNALDKTRS-GYLSGQQARSALGQSG-------LPQNQLAHIWTLSDVDGDGKLSADEFILAM 255 (1118)
T ss_pred hhhHHHHHhhhcccccc-cccccHHHHHHHHhcC-------CchhhHhhheeeeccCCCCcccHHHHHHHH
Confidence 34566799999999999 9999999999997765 688889999999999999999999998443
No 97
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=91.96 E-value=0.25 Score=50.81 Aligned_cols=69 Identities=23% Similarity=0.316 Sum_probs=60.9
Q ss_pred hHHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhcc
Q 012482 322 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRMWNLSCSA 396 (462)
Q Consensus 322 ~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~~~~~~ 396 (462)
...+.-|..+|.|+. |+++..++.++|+..+ ...+++.+++++++.|.+-+|.+...||.++|.....+
T Consensus 593 ~~~~~rf~~lD~~k~-~~~~i~~v~~vlk~~~-----~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~~~g 661 (680)
T KOG0042|consen 593 LRRKTRFAFLDADKK-AYQAIADVLKVLKSEN-----VGWDEDRLHEELQEADENLNGFVELREFLQLMSAIKNG 661 (680)
T ss_pred HHHHHHHHhhcchHH-HHHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHHhcC
Confidence 445577999999999 9999999999999887 37899999999999999999999999999999866654
No 98
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=91.83 E-value=0.15 Score=50.76 Aligned_cols=54 Identities=20% Similarity=0.241 Sum_probs=42.9
Q ss_pred CcccHHHHHHHHHHc-ccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhcc
Q 012482 338 DVITHSAFCEALRQV-NLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRMWNLSCSA 396 (462)
Q Consensus 338 G~i~~~el~~~l~~l-g~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~~~~~~ 396 (462)
+.|+..+|+.+.... | ..+++.-++-++..||.|+||.++++||+.+|.+.+..
T Consensus 403 ~~i~~~~f~raa~~vtG-----veLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~Rmhr 457 (489)
T KOG2643|consen 403 ASIDEKTFQRAAKVVTG-----VELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKRRMHR 457 (489)
T ss_pred CCCCHHHHHHHHHHhcC-----cccccceeeeEEEEEccCCCCcccHHHHHHHHHHHhhc
Confidence 558888887777543 4 36777777778888999999999999999999877654
No 99
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.82 E-value=0.33 Score=48.90 Aligned_cols=67 Identities=22% Similarity=0.363 Sum_probs=57.3
Q ss_pred HHhhhHHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhh
Q 012482 318 QKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRMWNL 392 (462)
Q Consensus 318 ~~~~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~~ 392 (462)
.++-+-...-|+.+-.|-. |+|+-.--|+.+..- ++.-+|+..|+...|.|.||.++..||+..|..
T Consensus 227 ~EQReYYvnQFrtvQpDp~-gfisGsaAknFFtKS-------klpi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 227 PEQREYYVNQFRTVQPDPH-GFISGSAAKNFFTKS-------KLPIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred HHHHHHHHhhhhcccCCcc-cccccHHHHhhhhhc-------cCchHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 3444555677999999999 999999999998774 578899999999999999999999999988773
No 100
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=91.53 E-value=0.23 Score=47.83 Aligned_cols=64 Identities=9% Similarity=0.063 Sum_probs=54.3
Q ss_pred hhhHHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhh
Q 012482 320 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRMWNLS 393 (462)
Q Consensus 320 ~~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~~~ 393 (462)
....+...|..+|.|.+ |.++..||+.+-. .-.+..|+.+|...|...||.|+-+|++.-+.+.
T Consensus 248 CKds~gWMFnklD~N~D-l~Ld~sEl~~I~l---------dknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~ 311 (434)
T KOG3555|consen 248 CKDSLGWMFNKLDTNYD-LLLDQSELRAIEL---------DKNEACIKPFFNSCDTYKDGSISTNEWCYCFQKS 311 (434)
T ss_pred hhhhhhhhhhccccccc-cccCHHHhhhhhc---------cCchhHHHHHHhhhcccccCccccchhhhhhccC
Confidence 33567789999999999 9999999987642 3467889999999999999999999999877643
No 101
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=90.25 E-value=1.2 Score=38.81 Aligned_cols=68 Identities=13% Similarity=0.299 Sum_probs=49.7
Q ss_pred HHHHhhh---ccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhc
Q 012482 325 NDAFAFF---KADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRMWNLSCS 395 (462)
Q Consensus 325 ~~~F~~~---D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~~~~~ 395 (462)
+++|..| -..+. ..++-.-|.++|+..|+ ....++...++-++..+-..+...|+|++|+..|.....
T Consensus 2 ~~~F~~f~~fG~~~~-~~m~~~~F~Kl~kD~~i--~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~ 72 (154)
T PF05517_consen 2 EAVFKAFASFGKKNG-TEMDSKNFAKLCKDCGI--IDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELAE 72 (154)
T ss_dssp HHHHHHHHCSSTSTS-SEEEHHHHHHHHHHTSS----SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcc-ccccHHHHHHHHHHcCC--CCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHH
Confidence 4455544 44444 68999999999999887 233589999999999987777778999999988875443
No 102
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]
Probab=90.12 E-value=0.17 Score=49.34 Aligned_cols=59 Identities=17% Similarity=0.209 Sum_probs=46.4
Q ss_pred EEEEEEeeccCCCCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEeecCCCCCcchhhHHHH
Q 012482 185 EILIVNTHLLFPHDSSLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGHVYKFLR 249 (462)
Q Consensus 185 ~~~v~ntHL~~~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~~~~~l~ 249 (462)
.+.+.++|+.|+|-. ...|.+|...+++.+.+...- ..+.++|||||.+|.+..|-..+
T Consensus 139 ~li~~~~~~f~~p~~--~~er~r~t~~~lnri~e~~~~----~w~~l~~~l~n~e~gd~~~va~T 197 (378)
T COG5239 139 GLILAVTHLFWHPYG--YYERFRQTYILLNRIGEKDNI----AWVCLFVGLFNKEPGDTPYVANT 197 (378)
T ss_pred hhhhhhhHhhcccce--eehhhhHHHHHHHHHhhhhhc----chhheeeeeccCCCCCceeEEec
Confidence 477889999997743 467899999999988776542 36789999999999888776553
No 103
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=89.78 E-value=0.35 Score=46.27 Aligned_cols=65 Identities=9% Similarity=0.167 Sum_probs=53.3
Q ss_pred hhhHHHHHHhhhccCCCCCcccHHHHHHHHHH-cccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhh
Q 012482 320 ASLAENDAFAFFKADNNGDVITHSAFCEALRQ-VNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRMWNL 392 (462)
Q Consensus 320 ~~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~-lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~~ 392 (462)
...-++-+|+.|+.+.| |.+...+|.-+|+. +| +.+-.+--++...+...+|+|.|.+|.+++..
T Consensus 294 t~~iiq~afk~f~v~eD-g~~ge~~ls~ilq~~lg-------v~~l~v~~lf~~i~q~d~~ki~~~~f~~fa~~ 359 (412)
T KOG4666|consen 294 TPVIIQYAFKRFSVAED-GISGEHILSLILQVVLG-------VEVLRVPVLFPSIEQKDDPKIYASNFRKFAAT 359 (412)
T ss_pred cHHHHHHHHHhcccccc-cccchHHHHHHHHHhcC-------cceeeccccchhhhcccCcceeHHHHHHHHHh
Confidence 33567789999999999 99999999999975 45 44445677888888888999999999988764
No 104
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=89.53 E-value=0.25 Score=36.56 Aligned_cols=54 Identities=19% Similarity=0.292 Sum_probs=36.8
Q ss_pred hhHHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCC----C---CCCcccHHHHHH
Q 012482 321 SLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADV----D---GNGVVNYEEFKR 388 (462)
Q Consensus 321 ~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~----~---~~g~I~~~eF~~ 388 (462)
.+++.++|+.+ .++. ++|+..||+..|.- ++++-+++.+.. + ..|..||..|++
T Consensus 5 ~eqv~~aFr~l-A~~K-pyVT~~dLr~~l~p------------e~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~ 65 (69)
T PF08726_consen 5 AEQVEEAFRAL-AGGK-PYVTEEDLRRSLTP------------EQAEYCISRMPPYEGPDGDAIPGAYDYESFTN 65 (69)
T ss_dssp CHHHHHHHHHH-CTSS-SCEEHHHHHHHS-C------------CCHHHHHCCSEC--SSS----TTEEECHHHHC
T ss_pred HHHHHHHHHHH-HcCC-CcccHHHHHHHcCc------------HHHHHHHHHCcccCCCCcCCCCCCcCHHHHHH
Confidence 36788999999 7777 99999999987522 223444444322 1 237799998874
No 105
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=89.52 E-value=1.2 Score=44.58 Aligned_cols=55 Identities=20% Similarity=0.162 Sum_probs=32.5
Q ss_pred CcEEEEEEeeccCCCCCCchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEeecCCCC
Q 012482 183 QQEILIVNTHLLFPHDSSLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGS 239 (462)
Q Consensus 183 g~~~~v~ntHL~~~~~~~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~ 239 (462)
...++++|.||.++- ..-..|....+.+...|.--....-.....++++||||..
T Consensus 164 ~t~~cFv~shlaag~--~N~eeR~~Dy~~I~~~i~f~~g~~I~~hdti~w~GDlNyR 218 (460)
T COG5411 164 RTSFCFVNSHLAAGV--NNIEERIFDYRSIASNICFSRGLRIYDHDTIFWLGDLNYR 218 (460)
T ss_pred cCCcEEEecchhccc--ccHHHHHHHHHHHHHheecCCCceecccceEEEecccCce
Confidence 356899999996532 3345566666666655532111000123459999999943
No 106
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=89.35 E-value=1.1 Score=45.17 Aligned_cols=57 Identities=18% Similarity=0.265 Sum_probs=45.2
Q ss_pred HhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHh----hCCCCCCcccHHHHHHHHhhh
Q 012482 328 FAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQ----ADVDGNGVVNYEEFKRMWNLS 393 (462)
Q Consensus 328 F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~----~D~~~~g~I~~~eF~~~~~~~ 393 (462)
|-.+|+|++ |.|++++|+..-.. .++.--++.++.+ +-.-.+|+|+|++|+-++...
T Consensus 284 FweLD~Dhd-~lidk~~L~ry~d~--------tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~ 344 (493)
T KOG2562|consen 284 FWELDTDHD-GLIDKEDLKRYGDH--------TLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAE 344 (493)
T ss_pred Hhhhccccc-cccCHHHHHHHhcc--------chhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHh
Confidence 667899999 99999999986433 4567788899983 344568999999999887644
No 107
>KOG1976 consensus Inositol polyphosphate 5-phosphatase, type I [Lipid transport and metabolism]
Probab=88.78 E-value=0.72 Score=43.82 Aligned_cols=65 Identities=22% Similarity=0.246 Sum_probs=46.1
Q ss_pred CCcEEEEEEeeccC--------CCCC-CchhHHHHHHHHHHHHHHHHHhhcCCCCCCEEEeecCCCCCcchh-hHHHHh
Q 012482 182 GQQEILIVNTHLLF--------PHDS-SLSVVRLHQVYKILQYLELYQTENKLNHIPIILCGDWNGSKRGHV-YKFLRS 250 (462)
Q Consensus 182 ~g~~~~v~ntHL~~--------~~~~-~~~~~R~~Q~~~l~~~l~~~~~~~~~~~~pvIl~GDFN~~p~s~~-~~~l~~ 250 (462)
.++.+.++|.||.. +..+ .++..|.+|+..+++.|..-.- ....+++.||||..-++.. ...|..
T Consensus 167 ~~k~fdfVN~hLFhD~snla~~~sspt~ys~~R~~al~~vL~el~~~~~----~~~~~fVfGdfNfrLds~s~ln~l~a 241 (391)
T KOG1976|consen 167 HGKEFDFVNLHLFHDVSNLATKNSSPTKYSSKREQALEMVLKELDEEGL----RNDAIFVFGDFNFRLDSTSLLNYLAA 241 (391)
T ss_pred cCceeeeeehhhhcchhhhhhhcCChhhhhhhHHHHHHHHHHHHHhhcc----CceEEEEecccccccchHHHHHHHhc
Confidence 78999999999942 1111 3456788899988888765332 3457999999999877654 455544
No 108
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=87.83 E-value=0.51 Score=45.19 Aligned_cols=101 Identities=11% Similarity=0.168 Sum_probs=66.2
Q ss_pred ccceeccCCCCCCChhhHHHHHHHHHHHHHHH-HH------------hhh-HHHHHHhhhccCCCCCcccHHHH---HHH
Q 012482 286 VDFIWLRNPNQSRKPLQASWAEAVFSIIKCQL-QK------------ASL-AENDAFAFFKADNNGDVITHSAF---CEA 348 (462)
Q Consensus 286 iD~If~s~~~~~~~~~~~~~~~~v~~ii~~~l-~~------------~~~-~~~~~F~~~D~d~~~G~i~~~el---~~~ 348 (462)
.|-.=++.-..+.++..+.|-..+...+.--+ .. +.+ .+..-|..+|+|.+ +.|.+.|. +.+
T Consensus 283 ~dp~kvR~l~gC~e~KKteFL~~Ll~aL~Tdmv~s~~~as~gr~~e~DeeRvv~w~F~qLdkN~n-n~i~rrEwKpFK~~ 361 (421)
T KOG4578|consen 283 VDPKKVRRLNGCPEKKKTEFLTSLLDALKTDMVMSGINASNGRKSEPDEERVVHWYFNQLDKNSN-NDIERREWKPFKRV 361 (421)
T ss_pred cccccccccCCCCcchhhHHHHHHHHHHhhhhhhhcccccCCcccCCChhheeeeeeeeeccccc-CccchhhcchHHHH
Confidence 34333444456777766655544443333211 11 111 22356999999999 99999985 455
Q ss_pred HHHcccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhh
Q 012482 349 LRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRMWNLSC 394 (462)
Q Consensus 349 l~~lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~~~~ 394 (462)
|..- .-.....++|++-.|.|+|-.|++.|++.-+....
T Consensus 362 l~k~-------s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~ 400 (421)
T KOG4578|consen 362 LLKK-------SKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVEK 400 (421)
T ss_pred HHhh-------ccHHHHhhhcchhcccCCCceecHHHHhhhhcccc
Confidence 5442 24567788999999999999999999998876544
No 109
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=87.76 E-value=1.4 Score=48.30 Aligned_cols=77 Identities=10% Similarity=-0.071 Sum_probs=61.5
Q ss_pred HHhhhHHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCC-----HHHHHHHHHhhCCCCCCcccHHHHHHHHhh
Q 012482 318 QKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLS-----FQETDDLWAQADVDGNGVVNYEEFKRMWNL 392 (462)
Q Consensus 318 ~~~~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~-----~~e~~~l~~~~D~~~~g~I~~~eF~~~~~~ 392 (462)
+....++++.|..+|+... |.++.++|..+|..+|. ... ..|+..|+...|.++-|.++|.+|...|.+
T Consensus 743 Q~v~~ElrAle~~~~~~d~-~aa~~e~~~~~Lmslg~-----~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R 816 (890)
T KOG0035|consen 743 QYVLDELRALENEQDKIDG-GAASPEELLRCLMSLGY-----NTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLER 816 (890)
T ss_pred HHHHHHHHHHHhHHHHhhc-ccCCHHHHHHHHHhcCc-----ccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhh
Confidence 4455789999999999999 99999999999999994 333 245566777788888899999999999887
Q ss_pred hhcccccc
Q 012482 393 SCSAQIEN 400 (462)
Q Consensus 393 ~~~~~~~~ 400 (462)
........
T Consensus 817 ~~e~l~~~ 824 (890)
T KOG0035|consen 817 EYEDLDTE 824 (890)
T ss_pred hhhhhcHH
Confidence 66544333
No 110
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=87.30 E-value=1.9 Score=29.76 Aligned_cols=31 Identities=10% Similarity=0.117 Sum_probs=25.8
Q ss_pred hhHHHHHHhhhccCCCCCcccHHHHHHHHHHc
Q 012482 321 SLAENDAFAFFKADNNGDVITHSAFCEALRQV 352 (462)
Q Consensus 321 ~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~l 352 (462)
..-...+|+..|++++ |.+..+||...++.|
T Consensus 20 ~~yA~~LFq~~D~s~~-g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 20 DEYARQLFQECDKSQS-GRLEGEEFEEFYKRL 50 (51)
T ss_dssp HHHHHHHHHHH-SSSS-SEBEHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCC-CCccHHHHHHHHHHh
Confidence 3456689999999999 999999999988765
No 111
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=87.22 E-value=1.6 Score=34.25 Aligned_cols=54 Identities=6% Similarity=0.006 Sum_probs=39.1
Q ss_pred ChhhHHHHHHHHHHHHHHHH--HhhhHHHHHHhhhccCCCCCcccHHHHHHHHHHcc
Q 012482 299 KPLQASWAEAVFSIIKCQLQ--KASLAENDAFAFFKADNNGDVITHSAFCEALRQVN 353 (462)
Q Consensus 299 ~~~~~~~~~~v~~ii~~~l~--~~~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg 353 (462)
......+++.+..-+...+. .....+.++|+.+|.|+| |.|+-.|+-.++..+.
T Consensus 23 tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~D-g~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 23 YLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRD-GKVGFQSFFSLIAGLL 78 (91)
T ss_pred cCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCC-CcCcHHHHHHHHHHHH
Confidence 34445555555555554442 244678899999999999 9999999998887665
No 112
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=87.15 E-value=1.5 Score=29.26 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=26.6
Q ss_pred HHhhhHHHHHHhhh-ccCCCCCcccHHHHHHHHHH
Q 012482 318 QKASLAENDAFAFF-KADNNGDVITHSAFCEALRQ 351 (462)
Q Consensus 318 ~~~~~~~~~~F~~~-D~d~~~G~i~~~el~~~l~~ 351 (462)
+.....+..+|..+ .++|++..+++.||+++|..
T Consensus 2 E~ai~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 2 EKAIETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 34556778899888 45676689999999999964
No 113
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=87.01 E-value=1.9 Score=33.71 Aligned_cols=31 Identities=6% Similarity=0.222 Sum_probs=28.0
Q ss_pred hHHHHHHhhhccCCCCCcccHHHHHHHHHHcc
Q 012482 322 LAENDAFAFFKADNNGDVITHSAFCEALRQVN 353 (462)
Q Consensus 322 ~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg 353 (462)
.++.++++.+|.|++ |.|+.+||..++..+.
T Consensus 47 ~~v~~mi~~~D~d~D-G~I~F~EF~~l~~~l~ 77 (89)
T cd05022 47 EGLEEKMKNLDVNQD-SKLSFEEFWELIGELA 77 (89)
T ss_pred HHHHHHHHHhCCCCC-CCCcHHHHHHHHHHHH
Confidence 678899999999999 9999999999887764
No 114
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=86.45 E-value=1.3 Score=34.58 Aligned_cols=32 Identities=13% Similarity=0.215 Sum_probs=28.4
Q ss_pred hhHHHHHHhhhccCCCCCcccHHHHHHHHHHcc
Q 012482 321 SLAENDAFAFFKADNNGDVITHSAFCEALRQVN 353 (462)
Q Consensus 321 ~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg 353 (462)
..++.++|+.+|.|++ |.|+.+||..++..+.
T Consensus 50 ~~~v~~i~~~~D~d~d-G~I~f~eF~~~~~~~~ 81 (88)
T cd05030 50 QKAIDKIFEDLDTNQD-GQLSFEEFLVLVIKVG 81 (88)
T ss_pred HHHHHHHHHHcCCCCC-CcCcHHHHHHHHHHHH
Confidence 4678899999999999 9999999999987764
No 115
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=86.27 E-value=0.96 Score=43.01 Aligned_cols=70 Identities=13% Similarity=0.154 Sum_probs=47.7
Q ss_pred HHHHHhhhccCCCCCcccHHHHHHHHHH-cccCCCCCCCCHHHH-----------HHHHHhhCCCCCCcccHHHHHHHHh
Q 012482 324 ENDAFAFFKADNNGDVITHSAFCEALRQ-VNLAGLPYGLSFQET-----------DDLWAQADVDGNGVVNYEEFKRMWN 391 (462)
Q Consensus 324 ~~~~F~~~D~d~~~G~i~~~el~~~l~~-lg~~~~~~~~~~~e~-----------~~l~~~~D~~~~g~I~~~eF~~~~~ 391 (462)
-+-.|...|.|++ |+++..||..++.. |.-+..+.+. ++++ +.+|+.+|+|.|-.|+.+||++--.
T Consensus 246 PKTFF~LHD~NsD-GfldeqELEaLFtkELEKvYdpkNe-eDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~ 323 (442)
T KOG3866|consen 246 PKTFFALHDLNSD-GFLDEQELEALFTKELEKVYDPKNE-EDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTD 323 (442)
T ss_pred cchheeeeccCCc-ccccHHHHHHHHHHHHHHhcCCCCc-chHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhh
Confidence 3457888999999 99999999988743 2211111122 2222 2267889999999999999997655
Q ss_pred hhhc
Q 012482 392 LSCS 395 (462)
Q Consensus 392 ~~~~ 395 (462)
...+
T Consensus 324 ~kef 327 (442)
T KOG3866|consen 324 NKEF 327 (442)
T ss_pred hccc
Confidence 4443
No 116
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=86.26 E-value=1.2 Score=45.08 Aligned_cols=92 Identities=17% Similarity=0.154 Sum_probs=62.5
Q ss_pred ChhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhhccCCCCCcccHHHHHHHHHHcccCC-CCCCCCHHHHHHHHHhhCCCC
Q 012482 299 KPLQASWAEAVFSIIKCQLQKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAG-LPYGLSFQETDDLWAQADVDG 377 (462)
Q Consensus 299 ~~~~~~~~~~v~~ii~~~l~~~~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~-~~~~~~~~e~~~l~~~~D~~~ 377 (462)
+....+|.+|.. ++..+=....-...+|..||+.++ |.+|.++++.++....++. .+.+.+.+-++..+. .+.
T Consensus 87 KDglisf~eF~a--fe~~lC~pDal~~~aFqlFDr~~~-~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg---~~~ 160 (694)
T KOG0751|consen 87 KDGLISFQEFRA--FESVLCAPDALFEVAFQLFDRLGN-GEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFG---DIR 160 (694)
T ss_pred ccccccHHHHHH--HHhhccCchHHHHHHHHHhcccCC-CceehHHHHHHHhccccccCCCccCCcchHHHHhh---hHH
Confidence 333557777663 222221223445689999999999 9999999999999988753 344556666665443 344
Q ss_pred CCcccHHHHHHHHhhhhcc
Q 012482 378 NGVVNYEEFKRMWNLSCSA 396 (462)
Q Consensus 378 ~g~I~~~eF~~~~~~~~~~ 396 (462)
--.++|.||.+++.+...+
T Consensus 161 ~r~~ny~~f~Q~lh~~~~E 179 (694)
T KOG0751|consen 161 KRHLNYAEFTQFLHEFQLE 179 (694)
T ss_pred HHhccHHHHHHHHHHHHHH
Confidence 5678999999888765543
No 117
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=85.45 E-value=1.4 Score=30.51 Aligned_cols=31 Identities=13% Similarity=0.154 Sum_probs=25.7
Q ss_pred HHhhhHHHHHHhhhccCCCCCcccHHHHHHHH
Q 012482 318 QKASLAENDAFAFFKADNNGDVITHSAFCEAL 349 (462)
Q Consensus 318 ~~~~~~~~~~F~~~D~d~~~G~i~~~el~~~l 349 (462)
....+.+..+|+.+|.+++ |.|+.+||..++
T Consensus 32 ~~~~~~~~~~~~~~~~~~~-~~l~~~ef~~~~ 62 (63)
T cd00051 32 GLSEEEIDEMIREVDKDGD-GKIDFEEFLELM 62 (63)
T ss_pred CCCHHHHHHHHHHhCCCCC-CeEeHHHHHHHh
Confidence 3344667789999999999 999999998765
No 118
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=85.34 E-value=1.1 Score=35.24 Aligned_cols=33 Identities=3% Similarity=0.191 Sum_probs=29.1
Q ss_pred hhhHHHHHHhhhccCCCCCcccHHHHHHHHHHcc
Q 012482 320 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVN 353 (462)
Q Consensus 320 ~~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg 353 (462)
...++.++++.+|.|++ |.|+.+||..++..|.
T Consensus 51 ~~~~v~~i~~elD~n~d-G~Idf~EF~~l~~~l~ 83 (93)
T cd05026 51 DPMLVDKIMNDLDSNKD-NEVDFNEFVVLVAALT 83 (93)
T ss_pred CHHHHHHHHHHhCCCCC-CCCCHHHHHHHHHHHH
Confidence 34578899999999999 9999999999998765
No 119
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=84.97 E-value=1.2 Score=35.29 Aligned_cols=30 Identities=17% Similarity=0.235 Sum_probs=25.7
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHhhh
Q 012482 364 QETDDLWAQADVDGNGVVNYEEFKRMWNLS 393 (462)
Q Consensus 364 ~e~~~l~~~~D~~~~g~I~~~eF~~~~~~~ 393 (462)
+++.+++..+|.|++|.|+++|+..+|+..
T Consensus 10 ~~l~~~F~~~D~d~~G~Is~~el~~~l~~~ 39 (96)
T smart00027 10 AKYEQIFRSLDKNQDGTVTGAQAKPILLKS 39 (96)
T ss_pred HHHHHHHHHhCCCCCCeEeHHHHHHHHHHc
Confidence 456677888999999999999999998763
No 120
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=84.49 E-value=2.3 Score=33.26 Aligned_cols=51 Identities=4% Similarity=0.074 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHHHHH--HhhhHHHHHHhhhccCCCCCcccHHHHHHHHHHcc
Q 012482 302 QASWAEAVFSIIKCQLQ--KASLAENDAFAFFKADNNGDVITHSAFCEALRQVN 353 (462)
Q Consensus 302 ~~~~~~~v~~ii~~~l~--~~~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg 353 (462)
...+..++...+...+. ....++.++++.+|.|++ |.|+.+||..++..+.
T Consensus 30 ~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~D-G~I~f~EF~~l~~~l~ 82 (89)
T cd05023 30 KTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSD-GQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCC-CcCcHHHHHHHHHHHH
Confidence 34444444444332222 223678899999999999 9999999999887765
No 121
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=83.92 E-value=2 Score=33.77 Aligned_cols=34 Identities=6% Similarity=0.225 Sum_probs=30.2
Q ss_pred hhhHHHHHHhhhccCCCCCcccHHHHHHHHHHccc
Q 012482 320 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVNL 354 (462)
Q Consensus 320 ~~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~ 354 (462)
...++.++|+.+|.+++ |.|+.+||..++..+++
T Consensus 49 s~~ei~~~~~~~D~~~d-g~I~f~eF~~l~~~~~~ 82 (94)
T cd05031 49 DPMAVDKIMKDLDQNRD-GKVNFEEFVSLVAGLSI 82 (94)
T ss_pred cHHHHHHHHHHhCCCCC-CcCcHHHHHHHHHHHHH
Confidence 34678899999999999 99999999999988875
No 122
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=83.77 E-value=1.3 Score=32.00 Aligned_cols=27 Identities=26% Similarity=0.524 Sum_probs=23.7
Q ss_pred HHHHHhhCCCCCCcccHHHHHHHHhhh
Q 012482 367 DDLWAQADVDGNGVVNYEEFKRMWNLS 393 (462)
Q Consensus 367 ~~l~~~~D~~~~g~I~~~eF~~~~~~~ 393 (462)
+++++.+|.|++|.|+.+|+..++...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~ 28 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKS 28 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHc
Confidence 467888999999999999999998754
No 123
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=83.53 E-value=1.3 Score=36.47 Aligned_cols=28 Identities=14% Similarity=0.268 Sum_probs=25.1
Q ss_pred hhHHHHHHhhhccCCCCCcccHHHHHHHH
Q 012482 321 SLAENDAFAFFKADNNGDVITHSAFCEAL 349 (462)
Q Consensus 321 ~~~~~~~F~~~D~d~~~G~i~~~el~~~l 349 (462)
...+...|+.+|.|++ |.||.+|+..+|
T Consensus 79 e~~~~~f~~~~D~n~D-g~IS~~Ef~~cl 106 (116)
T cd00252 79 EHCIKPFFESCDLDKD-GSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHHCCCCC-CCCCHHHHHHHH
Confidence 4456789999999999 999999999998
No 124
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=83.16 E-value=5.6 Score=34.98 Aligned_cols=72 Identities=15% Similarity=0.219 Sum_probs=57.6
Q ss_pred hHHHHHHhhhccCCCCCcccHHHHHHHHHHccc---------------------------------------CCC-----
Q 012482 322 LAENDAFAFFKADNNGDVITHSAFCEALRQVNL---------------------------------------AGL----- 357 (462)
Q Consensus 322 ~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~---------------------------------------~~~----- 357 (462)
..|++=...||.|+| |.|..-|--..+++||+ ..|
T Consensus 7 T~LQqHvaFFDrd~D-GiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg 85 (174)
T PF05042_consen 7 TVLQQHVAFFDRDKD-GIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSG 85 (174)
T ss_pred cHHhhhhceeCCCCC-eeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCcc
Confidence 345666778999999 99999999999999875 001
Q ss_pred ----CCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhh
Q 012482 358 ----PYGLSFQETDDLWAQADVDGNGVVNYEEFKRMWNLSC 394 (462)
Q Consensus 358 ----~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~~~~ 394 (462)
.-.+.++..++|+..++..+.+.+++.|..+|+....
T Consensus 86 ~YD~eGrFvp~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr 126 (174)
T PF05042_consen 86 AYDTEGRFVPQKFEEIFSKYAKTGPDALTLRELWRMLKGNR 126 (174)
T ss_pred ccccCCcCCHHHHHHHHHHhCCCCCCCcCHHHHHHHHHhcc
Confidence 1135577899999999998899999999999998654
No 125
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=82.36 E-value=1.9 Score=33.69 Aligned_cols=33 Identities=3% Similarity=0.096 Sum_probs=28.8
Q ss_pred hhhHHHHHHhhhccCCCCCcccHHHHHHHHHHcc
Q 012482 320 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVN 353 (462)
Q Consensus 320 ~~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg 353 (462)
..+++.++|+.+|.|++ |.|+.+||-.++..+.
T Consensus 49 t~~ev~~m~~~~D~d~d-G~Idf~EFv~lm~~l~ 81 (88)
T cd05029 49 QDAEIAKLMEDLDRNKD-QEVNFQEYVTFLGALA 81 (88)
T ss_pred CHHHHHHHHHHhcCCCC-CCCcHHHHHHHHHHHH
Confidence 44678899999999999 9999999998887764
No 126
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=81.28 E-value=4.7 Score=31.49 Aligned_cols=33 Identities=6% Similarity=0.127 Sum_probs=29.0
Q ss_pred hhhHHHHHHhhhccCCCCCcccHHHHHHHHHHcc
Q 012482 320 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVN 353 (462)
Q Consensus 320 ~~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg 353 (462)
....+.++|+.+|.|++ |.|+.+||..++..+.
T Consensus 50 s~~~v~~i~~~~D~d~~-G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 50 DADAVDKIMKELDENGD-GEVDFQEFVVLVAALT 82 (92)
T ss_pred CHHHHHHHHHHHCCCCC-CcCcHHHHHHHHHHHH
Confidence 34678899999999999 9999999999987765
No 127
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=80.99 E-value=1.9 Score=33.35 Aligned_cols=29 Identities=10% Similarity=0.195 Sum_probs=25.7
Q ss_pred HHHHHHHHhhCC--CCCCcccHHHHHHHHhh
Q 012482 364 QETDDLWAQADV--DGNGVVNYEEFKRMWNL 392 (462)
Q Consensus 364 ~e~~~l~~~~D~--~~~g~I~~~eF~~~~~~ 392 (462)
+++.+++..+|. |++|.|++.||..++..
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~ 38 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLET 38 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHH
Confidence 557778999999 89999999999999875
No 128
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=80.02 E-value=1.4 Score=34.33 Aligned_cols=29 Identities=21% Similarity=0.256 Sum_probs=25.6
Q ss_pred HHHHHHHHhhC-CCCCC-cccHHHHHHHHhh
Q 012482 364 QETDDLWAQAD-VDGNG-VVNYEEFKRMWNL 392 (462)
Q Consensus 364 ~e~~~l~~~~D-~~~~g-~I~~~eF~~~~~~ 392 (462)
.++.+.++.+| .|++| .|+.+||..+|..
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~ 38 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINN 38 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHH
Confidence 45778899998 79999 6999999999986
No 129
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=79.08 E-value=3.7 Score=37.91 Aligned_cols=58 Identities=16% Similarity=0.338 Sum_probs=48.0
Q ss_pred HHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHH
Q 012482 325 NDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKR 388 (462)
Q Consensus 325 ~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~ 388 (462)
++.=..+|.|.+ |.++.+||...+.-+.. ...-.++..+|..-|.+++.+++.+|.+.
T Consensus 284 kEFeElIDsNhD-GivTaeELe~y~dP~n~-----~~alne~~~~ma~~d~n~~~~Ls~eell~ 341 (362)
T KOG4251|consen 284 KEFEELIDSNHD-GIVTAEELEDYVDPQNF-----RLALNEVNDIMALTDANNDEKLSLEELLE 341 (362)
T ss_pred HHHHHHhhcCCc-cceeHHHHHhhcCchhh-----hhhHHHHHHHHhhhccCCCcccCHHHHHH
Confidence 344457899999 99999999998755542 46678899999999999999999999874
No 130
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=76.89 E-value=2 Score=34.93 Aligned_cols=34 Identities=26% Similarity=0.524 Sum_probs=24.1
Q ss_pred CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhh
Q 012482 360 GLSFQETDDLWAQADVDGNGVVNYEEFKRMWNLS 393 (462)
Q Consensus 360 ~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~~~ 393 (462)
-++|++.+.++.++-.|..|++.|.||+.-+...
T Consensus 3 iLtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~e 36 (118)
T PF08976_consen 3 ILTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSSE 36 (118)
T ss_dssp ---HHHHHHHHTTS-B-TTS-EEHHHHHHHT---
T ss_pred cccHHHhhhhhhhCcCCccCCEeHHHHHHHcccc
Confidence 4899999999999999999999999999877643
No 131
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=74.30 E-value=5 Score=43.13 Aligned_cols=63 Identities=21% Similarity=0.306 Sum_probs=53.8
Q ss_pred HHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHh
Q 012482 323 AENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRMWN 391 (462)
Q Consensus 323 ~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~ 391 (462)
-+...|+..|++++ |+++..+...+++.+.. .+....+..++++.|..+++++...+|.++..
T Consensus 137 wi~~~~~~ad~~~~-~~~~~~~~~~~~~~~n~-----~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~ 199 (746)
T KOG0169|consen 137 WIHSIFQEADKNKN-GHMSFDEVLDLLKQLNV-----QLSESKARRLFKESDNSQTGKLEEEEFVKFRK 199 (746)
T ss_pred HHHHHHHHHccccc-cccchhhHHHHHHHHHH-----hhhHHHHHHHHHHHHhhccceehHHHHHHHHH
Confidence 34577888999999 99999999999999884 78888888999999888899999999987655
No 132
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=69.14 E-value=4.8 Score=40.70 Aligned_cols=30 Identities=20% Similarity=0.364 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHHHhhCCCCCCcccHHHHHH
Q 012482 359 YGLSFQETDDLWAQADVDGNGVVNYEEFKR 388 (462)
Q Consensus 359 ~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~ 388 (462)
......++..+++.+|.|+||.|+.+||+.
T Consensus 329 ~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~ 358 (391)
T PRK12309 329 GEAFTHAAQEIFRLYDLDGDGFITREEWLG 358 (391)
T ss_pred cChhhHHHHHHHHHhCCCCCCcCcHHHHHH
Confidence 356678999999999999999999999964
No 133
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=68.59 E-value=10 Score=36.72 Aligned_cols=66 Identities=8% Similarity=0.003 Sum_probs=54.8
Q ss_pred hHHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhh
Q 012482 322 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRMWNL 392 (462)
Q Consensus 322 ~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~~ 392 (462)
..++..|..||.+++ |.++..|--.+|.-+.- ...+.+-++--++.|+.+-||.+.-.+|..+++-
T Consensus 259 d~l~~~f~LFde~~t-g~~D~re~v~~lavlc~----p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~ 324 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTT-GNGDYRETVKTLAVLCG----PPVTPVIIQYAFKRFSVAEDGISGEHILSLILQV 324 (412)
T ss_pred hhhhhhhheecCCCC-CcccHHHHhhhheeeeC----CCCcHHHHHHHHHhcccccccccchHHHHHHHHH
Confidence 456788999999999 99998887777765541 4677888999999999999999999999877763
No 134
>KOG0808 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=68.15 E-value=5.7 Score=37.00 Aligned_cols=27 Identities=30% Similarity=0.589 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHhhCCCcEEEEecccc
Q 012482 78 WFNRNQTILDWLICERSSVICLQEFWV 104 (462)
Q Consensus 78 w~~R~~~i~~~I~~~~~DII~LQEv~~ 104 (462)
-..|.+.|++........||||||.|+
T Consensus 98 ih~r~kaiieaaa~agvniiclqeawt 124 (387)
T KOG0808|consen 98 IHDRLKAIIEAAAVAGVNIICLQEAWT 124 (387)
T ss_pred HHHHHHHHHHHHHhcCccEEEeehhhc
Confidence 344777788888888999999999984
No 135
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=67.58 E-value=7.1 Score=31.50 Aligned_cols=30 Identities=13% Similarity=0.223 Sum_probs=25.9
Q ss_pred hHHHHHHhhhccCCCCCcccHHHHHHHHHHc
Q 012482 322 LAENDAFAFFKADNNGDVITHSAFCEALRQV 352 (462)
Q Consensus 322 ~~~~~~F~~~D~d~~~G~i~~~el~~~l~~l 352 (462)
..+.++|...|.|++ |+++.+||.-+|.-.
T Consensus 43 ~~L~~IW~LaD~~~d-G~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 43 DVLAQIWNLADIDND-GKLDFEEFAIAMHLI 72 (104)
T ss_dssp HHHHHHHHHH-SSSS-SEEEHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCCC-CcCCHHHHHHHHHHH
Confidence 678899999999999 999999999988654
No 136
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=64.60 E-value=18 Score=39.00 Aligned_cols=58 Identities=22% Similarity=0.282 Sum_probs=47.1
Q ss_pred HHHhhhcc--CCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHh
Q 012482 326 DAFAFFKA--DNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRMWN 391 (462)
Q Consensus 326 ~~F~~~D~--d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~ 391 (462)
+-|.+|+. -+. |+|+-..-+.++-+-| ++..-+-+|+...|.|.||++|..||.-.|+
T Consensus 17 K~~~qF~~Lkp~~-gfitg~qArnfflqS~-------LP~~VLaqIWALsDldkDGrmdi~EfSIAmk 76 (1118)
T KOG1029|consen 17 KHDAQFGQLKPGQ-GFITGDQARNFFLQSG-------LPTPVLAQIWALSDLDKDGRMDIREFSIAMK 76 (1118)
T ss_pred HHHHHHhccCCCC-CccchHhhhhhHHhcC-------CChHHHHHHHHhhhcCccccchHHHHHHHHH
Confidence 34455543 356 9999999999998877 5677789999999999999999999986665
No 137
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=64.27 E-value=11 Score=31.97 Aligned_cols=64 Identities=9% Similarity=0.230 Sum_probs=47.6
Q ss_pred HHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHH--HHHHhhCCCCCCcccHHHHHHHHhhhhcc
Q 012482 326 DAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETD--DLWAQADVDGNGVVNYEEFKRMWNLSCSA 396 (462)
Q Consensus 326 ~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~--~l~~~~D~~~~g~I~~~eF~~~~~~~~~~ 396 (462)
++-..|-.||. |.+|.++|-.++.-+. ...+.+++ --++.+|-|+|+.|.-++....++.....
T Consensus 75 ri~e~FSeDG~-GnlsfddFlDmfSV~s------E~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~ 140 (189)
T KOG0038|consen 75 RICEVFSEDGR-GNLSFDDFLDMFSVFS------EMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRD 140 (189)
T ss_pred HHHHHhccCCC-CcccHHHHHHHHHHHH------hhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhc
Confidence 34445567999 9999999999998776 33444444 45677899999999999988877765543
No 138
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.03 E-value=5.3 Score=39.20 Aligned_cols=66 Identities=17% Similarity=0.160 Sum_probs=53.0
Q ss_pred hhHHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCC-HHHHHHHHHhhCCCCCCcccHHHHHHHHhh
Q 012482 321 SLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLS-FQETDDLWAQADVDGNGVVNYEEFKRMWNL 392 (462)
Q Consensus 321 ~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~-~~e~~~l~~~~D~~~~g~I~~~eF~~~~~~ 392 (462)
+++++++|+.+|+.+. |+|+.+-|+..|..++. ..+ ++.|..|=+.+|..+-|.|-.++|+.-+.+
T Consensus 308 s~q~rR~f~a~d~~d~-nfis~s~~~~vm~~~N~-----~vse~a~v~l~~~~l~pE~~~iil~~d~lg~~~p 374 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDN-NFISCSGLQIVMTALNR-----LVSEPAYVMLMRQPLDPESLGIILLEDFLGEFFP 374 (449)
T ss_pred CHHHHhhhhccCccCC-CeeecHHHHHHHHHhcc-----cccCHHHHHHhcCccChhhcceEEeccccccccC
Confidence 5789999999999999 99999999999999883 344 455555666689999999988887755543
No 139
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=63.13 E-value=48 Score=25.92 Aligned_cols=67 Identities=13% Similarity=0.102 Sum_probs=39.7
Q ss_pred HHHHHHhhhccCCCCCcccHHHHHHHHHHcc----cCCCCC--CCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhh
Q 012482 323 AENDAFAFFKADNNGDVITHSAFCEALRQVN----LAGLPY--GLSFQETDDLWAQADVDGNGVVNYEEFKRMWNLS 393 (462)
Q Consensus 323 ~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg----~~~~~~--~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~~~ 393 (462)
.++-+|+.+ .|.+ |.++..-|...|+.+- ..|++. .-.+..++..+... ...-.|+.++|+.+|...
T Consensus 4 KyRylFsli-sd~~-g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 4 KYRYLFSLI-SDSN-GCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHH-S-TT-S-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT-
T ss_pred HHHHHHHHH-cCCC-CCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHhC
Confidence 467788888 6777 9999998888886531 011211 22566677777764 356789999999998754
No 140
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=63.04 E-value=8.8 Score=34.52 Aligned_cols=31 Identities=26% Similarity=0.482 Sum_probs=26.5
Q ss_pred HHHHHHHHhhCCCCCCcccHHHHHHHHhhhh
Q 012482 364 QETDDLWAQADVDGNGVVNYEEFKRMWNLSC 394 (462)
Q Consensus 364 ~e~~~l~~~~D~~~~g~I~~~eF~~~~~~~~ 394 (462)
.....|++.+|.+.||.||+.|...||.+..
T Consensus 99 k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLg 129 (244)
T KOG0041|consen 99 KDAESMFKQYDEDRDGFIDLMELKRMMEKLG 129 (244)
T ss_pred HHHHHHHHHhcccccccccHHHHHHHHHHhC
Confidence 3456799999999999999999999997544
No 141
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=62.45 E-value=9 Score=32.61 Aligned_cols=57 Identities=16% Similarity=0.279 Sum_probs=33.3
Q ss_pred CcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCC-------CCcccHHHHHHHHhhhhccccccc
Q 012482 338 DVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDG-------NGVVNYEEFKRMWNLSCSAQIENN 401 (462)
Q Consensus 338 G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~-------~g~I~~~eF~~~~~~~~~~~~~~~ 401 (462)
+.||..||.+.=+-+. .+...++.++++|..+| .+.|||+.|..+|........+++
T Consensus 6 ~~lsp~eF~qLq~y~e-------ys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~ 69 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSE-------YSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPED 69 (138)
T ss_dssp S-S-HHHHHHHHHHHH-------H----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HH
T ss_pred eccCHHHHHHHHHHHH-------HHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHH
Confidence 7799999887543333 35668999999985443 558999999999986664433333
No 142
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=58.52 E-value=4 Score=45.61 Aligned_cols=67 Identities=18% Similarity=0.262 Sum_probs=57.2
Q ss_pred HHHhhhHHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHh
Q 012482 317 LQKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRMWN 391 (462)
Q Consensus 317 l~~~~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~ 391 (462)
.......+.++|...|.+++ |.|+-.+....+..-| +....+...+...|.++.|.+++.||.-.|-
T Consensus 278 sp~d~~~~~~if~q~d~~~d-G~I~s~~~~~~f~~~g-------l~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~ 344 (847)
T KOG0998|consen 278 SPSDKQKYSKIFSQVDKDND-GSISSNEARNIFLPFG-------LSKPRLAHVWLLADTQNTGTLSKDEFALAMH 344 (847)
T ss_pred ChHHHHHHHHHHHhccccCC-CcccccccccccccCC-------CChhhhhhhhhhcchhccCcccccccchhhh
Confidence 34455666779999999999 9999999999997766 6788899999999999999999999986554
No 143
>PF14658 EF-hand_9: EF-hand domain
Probab=58.06 E-value=17 Score=26.66 Aligned_cols=32 Identities=9% Similarity=0.204 Sum_probs=27.7
Q ss_pred hhhHHHHHHhhhccCCCCCcccHHHHHHHHHH
Q 012482 320 ASLAENDAFAFFKADNNGDVITHSAFCEALRQ 351 (462)
Q Consensus 320 ~~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~ 351 (462)
...+++++-+.+|+++.+|.|+.++|..+|+.
T Consensus 33 ~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 33 EESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 34588899999999987799999999999875
No 144
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=58.03 E-value=15 Score=38.67 Aligned_cols=65 Identities=14% Similarity=0.245 Sum_probs=44.4
Q ss_pred HhhhHHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHh
Q 012482 319 KASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRMWN 391 (462)
Q Consensus 319 ~~~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~ 391 (462)
....-+.+.|..||.|+| |-++..||+.++...+-..++..+ ..+.-. .+..|.++|+-|+..|.
T Consensus 312 ~~~~Fl~~~f~~~D~d~D-g~L~p~El~~LF~~~P~~pW~~~~-~~~~t~------~~~~G~ltl~g~l~~Ws 376 (625)
T KOG1707|consen 312 KGYRFLVDVFEKFDRDND-GALSPEELKDLFSTAPGSPWTSSP-YKDSTV------KNERGWLTLNGFLSQWS 376 (625)
T ss_pred HHHHHHHHHHHhccCCCC-CCcCHHHHHHHhhhCCCCCCCCCc-ccccce------ecccceeehhhHHHHHH
Confidence 344567789999999999 999999999999887621111111 111111 12578999999987665
No 145
>PLN02952 phosphoinositide phospholipase C
Probab=57.16 E-value=42 Score=35.93 Aligned_cols=67 Identities=10% Similarity=0.047 Sum_probs=47.7
Q ss_pred hhHHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhC-------CCCCCcccHHHHHHHHhh
Q 012482 321 SLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQAD-------VDGNGVVNYEEFKRMWNL 392 (462)
Q Consensus 321 ~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D-------~~~~g~I~~~eF~~~~~~ 392 (462)
.+++..+|..+-. +. +.++.++|...|....- + ...+.+++++++..+- ..+.+.++++.|..++..
T Consensus 37 r~ei~~lf~~~~~-~~-~~mt~~~l~~FL~~~Q~--e-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 37 PDDVKDVFCKFSV-GG-GHMGADQLRRFLVLHQD--E-LDCTLAEAQRIVEEVINRRHHVTRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred hHHHHHHHHHHhC-CC-CccCHHHHHHHHHHhCC--C-cCCCHHHHHHHHHHHHhhccccccccccCcCHHHHHHHHcC
Confidence 4788999999854 44 67999999999987651 1 1356777888766541 112346899999998863
No 146
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=56.88 E-value=23 Score=23.85 Aligned_cols=39 Identities=18% Similarity=0.067 Sum_probs=28.5
Q ss_pred HHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHH
Q 012482 342 HSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRM 389 (462)
Q Consensus 342 ~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~ 389 (462)
.+|...+|..|| +++.|+++.++.+.. ...++.+|.++.
T Consensus 3 ~~d~~~AL~~LG-------y~~~e~~~av~~~~~--~~~~~~e~~ik~ 41 (47)
T PF07499_consen 3 LEDALEALISLG-------YSKAEAQKAVSKLLE--KPGMDVEELIKQ 41 (47)
T ss_dssp HHHHHHHHHHTT-------S-HHHHHHHHHHHHH--STTS-HHHHHHH
T ss_pred HHHHHHHHHHcC-------CCHHHHHHHHHHhhc--CCCCCHHHHHHH
Confidence 368889999999 689999999998864 445567776543
No 147
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.66 E-value=18 Score=30.73 Aligned_cols=65 Identities=15% Similarity=0.195 Sum_probs=46.6
Q ss_pred HHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhcc
Q 012482 326 DAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRMWNLSCSA 396 (462)
Q Consensus 326 ~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~~~~~~ 396 (462)
=+|+.++.| |.++..|..+..+-+. +...++.+++++++.....-+...|||-.|-..+.+.+..
T Consensus 34 Llf~Vm~AD---G~v~~~E~~a~r~il~---~~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~Ld~ 98 (148)
T COG4103 34 LLFHVMEAD---GTVSESEREAFRAILK---ENFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHLDE 98 (148)
T ss_pred HHHHHHhcc---cCcCHHHHHHHHHHHH---HHcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCH
Confidence 458888777 4588888544332221 1125899999999988877778899999998888766643
No 148
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=49.19 E-value=44 Score=34.40 Aligned_cols=78 Identities=15% Similarity=0.169 Sum_probs=52.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCC-C
Q 012482 300 PLQASWAEAVFSIIKCQLQKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDG-N 378 (462)
Q Consensus 300 ~~~~~~~~~v~~ii~~~l~~~~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~-~ 378 (462)
....||.++.....+++.+. -+++|+.-|+.++ |+||.-+++..+...-. .+....+++.+-..--.. .
T Consensus 161 ~r~~ny~~f~Q~lh~~~~E~----~~qafr~~d~~~n-g~is~Ldfq~imvt~~~-----h~lt~~v~~nlv~vagg~~~ 230 (694)
T KOG0751|consen 161 KRHLNYAEFTQFLHEFQLEH----AEQAFREKDKAKN-GFISVLDFQDIMVTIRI-----HLLTPFVEENLVSVAGGNDS 230 (694)
T ss_pred HHhccHHHHHHHHHHHHHHH----HHHHHHHhcccCC-CeeeeechHhhhhhhhh-----hcCCHHHhhhhhhhcCCCCc
Confidence 33446666666666665544 5678999999999 99999999999977653 444556666555543222 2
Q ss_pred CcccHHHHH
Q 012482 379 GVVNYEEFK 387 (462)
Q Consensus 379 g~I~~~eF~ 387 (462)
-.++|..|.
T Consensus 231 H~vSf~yf~ 239 (694)
T KOG0751|consen 231 HQVSFSYFN 239 (694)
T ss_pred cccchHHHH
Confidence 345655553
No 149
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=48.43 E-value=26 Score=37.24 Aligned_cols=17 Identities=41% Similarity=0.624 Sum_probs=13.8
Q ss_pred CCCCCCCCCCeeEEeec
Q 012482 439 ENYSLSDHAPLSVVFSP 455 (462)
Q Consensus 439 ~~~~~~~~~~l~~~~~~ 455 (462)
.++..|||-|..+.|.-
T Consensus 575 ~ei~~SDHRPV~A~F~v 591 (621)
T PLN03191 575 SEIRLSDHRPVSSMFLV 591 (621)
T ss_pred CCcccCCchhcceEEEE
Confidence 35677999999999963
No 150
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=46.21 E-value=24 Score=28.05 Aligned_cols=54 Identities=17% Similarity=0.174 Sum_probs=39.1
Q ss_pred CcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhh
Q 012482 338 DVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRMWNLSC 394 (462)
Q Consensus 338 G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~~~~ 394 (462)
|.++..|...+-.-+.- ...+++++.++++..+........++.+|.+.+....
T Consensus 14 G~v~~~E~~~i~~~l~~---~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 67 (104)
T cd07313 14 GEYDEEERAAIDRLLAE---RFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEHF 67 (104)
T ss_pred CCCCHHHHHHHHHHHHH---HhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 88999886655433220 0136888999999888777777889999998887654
No 151
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=43.79 E-value=26 Score=37.25 Aligned_cols=58 Identities=14% Similarity=0.237 Sum_probs=47.6
Q ss_pred hHHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHH
Q 012482 322 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEF 386 (462)
Q Consensus 322 ~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF 386 (462)
.-+.++|+.+|.+++ |.|+..+|..+|..|-. ..--+.+.-+++.+|.+++ ..+-+|-
T Consensus 555 ~~~~rlF~l~D~s~~-g~Ltf~~lv~gL~~l~~-----~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 555 IFLERLFRLLDDSMT-GLLTFKDLVSGLSILKA-----GDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHhcccCCc-ceeEHHHHHHHHHHHHh-----hhHHHHHHHHHhhccCCcc-ccccccc
Confidence 345689999999999 99999999999988762 3445678888899999998 8777765
No 152
>PLN02230 phosphoinositide phospholipase C 4
Probab=43.54 E-value=83 Score=33.73 Aligned_cols=67 Identities=9% Similarity=0.057 Sum_probs=47.7
Q ss_pred hHHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhC-------CCCCCcccHHHHHHHHhh
Q 012482 322 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQAD-------VDGNGVVNYEEFKRMWNL 392 (462)
Q Consensus 322 ~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D-------~~~~g~I~~~eF~~~~~~ 392 (462)
.+++++|..+- .+. +.++.++|...|..-.- .....+.+++++++..+- .-+.+.++++.|..++..
T Consensus 29 ~ei~~lf~~~s-~~~-~~mt~~~l~~FL~~~Q~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 29 ADVRDLFEKYA-DGD-AHMSPEQLQKLMAEEGG--GEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred HHHHHHHHHHh-CCC-CccCHHHHHHHHHHhCC--CcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 57888999984 444 78999999999987541 112346777888886542 123456999999998764
No 153
>PLN02222 phosphoinositide phospholipase C 2
Probab=42.37 E-value=74 Score=33.97 Aligned_cols=66 Identities=12% Similarity=0.075 Sum_probs=49.4
Q ss_pred hHHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCC-CCCCcccHHHHHHHHhhh
Q 012482 322 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADV-DGNGVVNYEEFKRMWNLS 393 (462)
Q Consensus 322 ~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~-~~~g~I~~~eF~~~~~~~ 393 (462)
.++..+|..+-. + +.++.++|...|....- . ...+.+.++++|..+.. -..+.++++.|..+|...
T Consensus 25 ~ei~~if~~~~~--~-~~mt~~~l~~FL~~~Q~--~-~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s~ 91 (581)
T PLN02222 25 REIKTIFEKYSE--N-GVMTVDHLHRFLIDVQK--Q-DKATREDAQSIINSASSLLHRNGLHLDAFFKYLFGD 91 (581)
T ss_pred HHHHHHHHHhcC--C-CCcCHHHHHHHHHHhcC--C-ccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcCC
Confidence 577888888853 5 78999999999987651 0 13567888999987642 246779999999998753
No 154
>PRK00523 hypothetical protein; Provisional
Probab=41.47 E-value=64 Score=23.98 Aligned_cols=42 Identities=14% Similarity=0.059 Sum_probs=33.3
Q ss_pred HHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhh
Q 012482 325 NDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQA 373 (462)
Q Consensus 325 ~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~ 373 (462)
++.|+.+=+++ --|+.+-++.++.++| .++++..++++++.+
T Consensus 27 rk~~~k~l~~N--Ppine~mir~M~~QMG-----qKPSekki~Q~m~~m 68 (72)
T PRK00523 27 KKMFKKQIREN--PPITENMIRAMYMQMG-----RKPSESQIKQVMRSV 68 (72)
T ss_pred HHHHHHHHHHC--cCCCHHHHHHHHHHhC-----CCccHHHHHHHHHHH
Confidence 44555444433 3599999999999999 589999999999876
No 155
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=39.84 E-value=74 Score=23.14 Aligned_cols=31 Identities=10% Similarity=0.040 Sum_probs=27.8
Q ss_pred CcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhh
Q 012482 338 DVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQA 373 (462)
Q Consensus 338 G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~ 373 (462)
--|+.+-++.++.++| .++++..++++++.+
T Consensus 30 Ppine~mir~M~~QMG-----~kpSekqi~Q~m~~m 60 (64)
T PF03672_consen 30 PPINEKMIRAMMMQMG-----RKPSEKQIKQMMRSM 60 (64)
T ss_pred CCCCHHHHHHHHHHhC-----CCccHHHHHHHHHHH
Confidence 3599999999999999 589999999999865
No 156
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=38.60 E-value=83 Score=33.32 Aligned_cols=82 Identities=16% Similarity=0.131 Sum_probs=51.4
Q ss_pred HhhhHHHHHHhhhccCCCCCcccHHHHHHHHH-HcccCCCCCCCCHHHHHHHHHhh---CCCC--CCcccHHHHHHHHhh
Q 012482 319 KASLAENDAFAFFKADNNGDVITHSAFCEALR-QVNLAGLPYGLSFQETDDLWAQA---DVDG--NGVVNYEEFKRMWNL 392 (462)
Q Consensus 319 ~~~~~~~~~F~~~D~d~~~G~i~~~el~~~l~-~lg~~~~~~~~~~~e~~~l~~~~---D~~~--~g~I~~~eF~~~~~~ 392 (462)
.....+.++|+..|.|++ |.++-.||-..=+ -++ .++...+++.+.... =.+| +..+....|+-+...
T Consensus 192 ~~v~al~RIFki~D~d~D-~~Lsd~Eln~fQ~~CF~-----~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~l 265 (625)
T KOG1707|consen 192 RCVKALKRIFKISDSDND-GALSDAELNDFQKKCFN-----TPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTL 265 (625)
T ss_pred HHHHHHHHHHhhhccccc-cccchhhhhHHHHHhcC-----CCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHH
Confidence 344567899999999999 9999998765432 234 366666655544443 3332 456677778866554
Q ss_pred hhccccccccCcccc
Q 012482 393 SCSAQIENNCNDNME 407 (462)
Q Consensus 393 ~~~~~~~~~~~~~~~ 407 (462)
.. ++...++-|.+-
T Consensus 266 fi-ergr~EttW~iL 279 (625)
T KOG1707|consen 266 FI-ERGRHETTWTIL 279 (625)
T ss_pred HH-Hhccccchhhhh
Confidence 44 333445556553
No 157
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=37.23 E-value=1.2e+02 Score=20.78 Aligned_cols=41 Identities=10% Similarity=0.056 Sum_probs=31.6
Q ss_pred HhhhHHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHh
Q 012482 319 KASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQ 372 (462)
Q Consensus 319 ~~~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~ 372 (462)
.+...|.++|.. + .+.+..++..+...+| ++..+|..+|..
T Consensus 10 ~~~~~Le~~f~~-----~-~~P~~~~~~~la~~~~-------l~~~qV~~WF~n 50 (59)
T cd00086 10 EQLEELEKEFEK-----N-PYPSREEREELAKELG-------LTERQVKIWFQN 50 (59)
T ss_pred HHHHHHHHHHHh-----C-CCCCHHHHHHHHHHHC-------cCHHHHHHHHHH
Confidence 344566777777 4 7799999999988888 688889888763
No 158
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=35.44 E-value=47 Score=24.92 Aligned_cols=43 Identities=12% Similarity=0.157 Sum_probs=24.4
Q ss_pred CcccHHHHHHHHHHcccC----CCCCCCCHHHHHHHHHhhCCCCCCcccHHHH
Q 012482 338 DVITHSAFCEALRQVNLA----GLPYGLSFQETDDLWAQADVDGNGVVNYEEF 386 (462)
Q Consensus 338 G~i~~~el~~~l~~lg~~----~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF 386 (462)
|++..+||..++..+.-. ......+..++++|+. +|.|+-++|
T Consensus 29 Gkv~~ee~n~~~e~~p~~~~~lAk~~G~t~~~l~~~~~------~Gkit~~~~ 75 (75)
T TIGR02675 29 GKLRGEEINSLLEALPGALQALAKAMGVTRGELRKMLS------DGKLTADVI 75 (75)
T ss_pred CcccHHHHHHHHHHhHHHHHHHHHHhCCCHHHHHHHHH------CCCCccccC
Confidence 889999988887653200 0001245566666665 456655543
No 159
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=35.31 E-value=39 Score=18.66 Aligned_cols=16 Identities=38% Similarity=0.650 Sum_probs=12.1
Q ss_pred CCCCCCcccHHHHHHH
Q 012482 374 DVDGNGVVNYEEFKRM 389 (462)
Q Consensus 374 D~~~~g~I~~~eF~~~ 389 (462)
|.|+||.|+--+|.-+
T Consensus 1 DvN~DG~vna~D~~~l 16 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALL 16 (21)
T ss_dssp -TTSSSSSSHHHHHHH
T ss_pred CCCCCCcCCHHHHHHH
Confidence 6799999998888643
No 160
>PLN02228 Phosphoinositide phospholipase C
Probab=35.28 E-value=1.3e+02 Score=32.04 Aligned_cols=66 Identities=12% Similarity=0.196 Sum_probs=48.4
Q ss_pred hHHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCC----CCCcccHHHHHHHHhhh
Q 012482 322 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVD----GNGVVNYEEFKRMWNLS 393 (462)
Q Consensus 322 ~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~----~~g~I~~~eF~~~~~~~ 393 (462)
+++.++|..+-. + +.++.++|...|+...- . ...+.+.+.+++..+... ..|.++.+.|..++...
T Consensus 24 ~ei~~if~~~s~--~-~~~t~~~~~~FL~~~Q~--~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 24 VSIKRLFEAYSR--N-GKMSFDELLRFVSEVQG--E-RHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred HHHHHHHHHhcC--C-CccCHHHHHHHHHHhcC--C-ccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcCc
Confidence 567788877743 4 67999999999987641 0 124567788999887643 34689999999998653
No 161
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=35.18 E-value=51 Score=32.30 Aligned_cols=80 Identities=10% Similarity=0.046 Sum_probs=58.3
Q ss_pred HHHHHHHHhhhHHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHh
Q 012482 312 IIKCQLQKASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRMWN 391 (462)
Q Consensus 312 ii~~~l~~~~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~ 391 (462)
+.+..+..-..+|+++|+.+-.+.+ +-.....+..+-..+.- .-.+....++.-||..+|.|.||.++-.|...+..
T Consensus 201 Ct~qeL~~lg~RL~dWF~~lhe~s~-~~~~~ss~~~~~~~~d~--s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~l 277 (434)
T KOG3555|consen 201 CTDQELRRLGNRLRDWFKALHEDSS-QNDKTSSLHSAASGFDT--SILPICKDSLGWMFNKLDTNYDLLLDQSELRAIEL 277 (434)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhhhh-ccCcchhhccccccccc--ccCcchhhhhhhhhhccccccccccCHHHhhhhhc
Confidence 4555555556789999999988877 77777666665443330 01256788999999999999999999999887665
Q ss_pred hhh
Q 012482 392 LSC 394 (462)
Q Consensus 392 ~~~ 394 (462)
.+.
T Consensus 278 dkn 280 (434)
T KOG3555|consen 278 DKN 280 (434)
T ss_pred cCc
Confidence 433
No 162
>PRK01844 hypothetical protein; Provisional
Probab=34.47 E-value=94 Score=23.13 Aligned_cols=42 Identities=10% Similarity=0.077 Sum_probs=33.4
Q ss_pred HHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhh
Q 012482 325 NDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQA 373 (462)
Q Consensus 325 ~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~ 373 (462)
++.|+.+=+++ --|+.+-++.++.++| .++++..++++++.+
T Consensus 26 rk~~~k~lk~N--Ppine~mir~Mm~QMG-----qkPSekki~Q~m~~m 67 (72)
T PRK01844 26 RKYMMNYLQKN--PPINEQMLKMMMMQMG-----QKPSQKKINQMMSAM 67 (72)
T ss_pred HHHHHHHHHHC--CCCCHHHHHHHHHHhC-----CCccHHHHHHHHHHH
Confidence 44555544444 3599999999999999 589999999999876
No 163
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=34.35 E-value=39 Score=27.65 Aligned_cols=25 Identities=12% Similarity=0.308 Sum_probs=19.1
Q ss_pred hHHHHHHhhhccCCCCCcccHHHHHH
Q 012482 322 LAENDAFAFFKADNNGDVITHSAFCE 347 (462)
Q Consensus 322 ~~~~~~F~~~D~d~~~G~i~~~el~~ 347 (462)
..++..|+..|.|+| |.||..|...
T Consensus 88 ~C~~~F~~~CD~n~d-~~Is~~EW~~ 112 (113)
T PF10591_consen 88 HCARPFFRSCDVNKD-GKISLDEWCN 112 (113)
T ss_dssp GGHHHHHHHH-TT-S-SSEEHHHHHH
T ss_pred HHHHHHHHHcCCCCC-CCCCHHHHcc
Confidence 346778899999999 9999999764
No 164
>KOG3449 consensus 60S acidic ribosomal protein P2 [Translation, ribosomal structure and biogenesis]
Probab=33.27 E-value=1.1e+02 Score=24.72 Aligned_cols=58 Identities=14% Similarity=0.099 Sum_probs=44.5
Q ss_pred HHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhh
Q 012482 326 DAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRMWNLSC 394 (462)
Q Consensus 326 ~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~~~~ 394 (462)
.+|-+++.-++ -..+..+++++|...|+ ..+++.++.++.++. |+ +.+|.+.-=+.++
T Consensus 5 aAYLL~~lgGn-~~psa~DikkIl~sVG~-----E~d~e~i~~visel~----GK-~i~ElIA~G~ekl 62 (112)
T KOG3449|consen 5 AAYLLAVLGGN-ASPSASDIKKILESVGA-----EIDDERINLVLSELK----GK-DIEELIAAGREKL 62 (112)
T ss_pred HHHHHHHhcCC-CCCCHHHHHHHHHHhCc-----ccCHHHHHHHHHHhc----CC-CHHHHHHHhHHHH
Confidence 45666666676 77999999999999996 889999999999873 44 7788775444443
No 165
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=32.43 E-value=1.5e+02 Score=21.89 Aligned_cols=25 Identities=12% Similarity=0.102 Sum_probs=12.1
Q ss_pred HHHHHHHHHcccCCCCCCCCHHHHHHHHHh
Q 012482 343 SAFCEALRQVNLAGLPYGLSFQETDDLWAQ 372 (462)
Q Consensus 343 ~el~~~l~~lg~~~~~~~~~~~e~~~l~~~ 372 (462)
+++.++++..|+ .++.+|+..+++.
T Consensus 17 ~~m~~if~l~~~-----~vs~~el~a~lrk 41 (68)
T PF07308_consen 17 DDMIEIFALAGF-----EVSKAELSAWLRK 41 (68)
T ss_pred HHHHHHHHHcCC-----ccCHHHHHHHHCC
Confidence 344444444442 4555555555544
No 166
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.72 E-value=1.3e+02 Score=22.27 Aligned_cols=42 Identities=12% Similarity=0.041 Sum_probs=32.5
Q ss_pred HHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhh
Q 012482 325 NDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQA 373 (462)
Q Consensus 325 ~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~ 373 (462)
++.|...=+|+ --|+.+-++.++.++| .++++..++++++.+
T Consensus 26 rk~~~k~lk~N--Ppine~~iR~M~~qmG-----qKpSe~kI~Qvm~~i 67 (71)
T COG3763 26 RKQMKKQLKDN--PPINEEMIRMMMAQMG-----QKPSEKKINQVMRSI 67 (71)
T ss_pred HHHHHHHHhhC--CCCCHHHHHHHHHHhC-----CCchHHHHHHHHHHH
Confidence 34454444444 3599999999999999 589999999999865
No 167
>KOG0565 consensus Inositol polyphosphate 5-phosphatase and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.08 E-value=1.3e+02 Score=25.42 Aligned_cols=60 Identities=23% Similarity=0.157 Sum_probs=31.6
Q ss_pred CCcEEEEEEeeccCCCCCCchhH-HHHHHHHHHHHHHHHHhhcC-CC------CCCEEEeecCCCCCcch
Q 012482 182 GQQEILIVNTHLLFPHDSSLSVV-RLHQVYKILQYLELYQTENK-LN------HIPIILCGDWNGSKRGH 243 (462)
Q Consensus 182 ~g~~~~v~ntHL~~~~~~~~~~~-R~~Q~~~l~~~l~~~~~~~~-~~------~~pvIl~GDFN~~p~s~ 243 (462)
.+..+..++.|+.++.. .... |..-.+.+.+...-...... .+ ..-||+.||+|.....+
T Consensus 57 ~~~~~~~v~~hl~~~~~--~~~~~r~~d~~~i~~~~~~~~~~~~~~~~~~~~~~D~v~w~GDlN~Rl~~~ 124 (145)
T KOG0565|consen 57 SQTSFCFVISHLTSGVH--KVYERRNEDYQEILNGLRFPSVSPASEPVISDGEHDTVIWLGDLNYRLSGP 124 (145)
T ss_pred cCceEEEEEecccccch--hhHHHhhccHHHHHhhccccccCcccccccccccccEEEEecceeeeecCc
Confidence 56778999999976432 1222 33334444433321111000 01 12488999999866544
No 168
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=28.33 E-value=26 Score=31.43 Aligned_cols=58 Identities=12% Similarity=0.229 Sum_probs=41.7
Q ss_pred HhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhh
Q 012482 328 FAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRMWNL 392 (462)
Q Consensus 328 F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~~ 392 (462)
|..+|+---||++|..||.-+- + .+ -+-+..+...+.-.|.|+||.|+.+|+-.-+.-
T Consensus 193 f~qld~~p~d~~~sh~el~pl~-a-p~-----ipme~c~~~f~e~cd~~nd~~ial~ew~~c~gi 250 (259)
T KOG4004|consen 193 FGQLDQHPIDGYLSHTELAPLR-A-PL-----IPMEHCTTRFFETCDLDNDKYIALDEWAGCFGI 250 (259)
T ss_pred eccccCCCcccccccccccccc-C-Cc-----ccHHhhchhhhhcccCCCCCceeHHHhhcccCc
Confidence 6677876534999999986432 1 10 122466788999999999999999999766543
No 169
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=27.42 E-value=54 Score=24.99 Aligned_cols=33 Identities=18% Similarity=0.348 Sum_probs=21.9
Q ss_pred CcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCC
Q 012482 338 DVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDG 377 (462)
Q Consensus 338 G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~ 377 (462)
|+||.+|+..+|... .++.+.++.++..+...|
T Consensus 20 G~lT~~eI~~~L~~~-------~~~~e~id~i~~~L~~~g 52 (82)
T PF03979_consen 20 GYLTYDEINDALPED-------DLDPEQIDEIYDTLEDEG 52 (82)
T ss_dssp SS-BHHHHHHH-S-S----------HHHHHHHHHHHHTT-
T ss_pred CcCCHHHHHHHcCcc-------CCCHHHHHHHHHHHHHCC
Confidence 999999999999754 378899999988875443
No 170
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=27.05 E-value=2.8e+02 Score=21.46 Aligned_cols=51 Identities=14% Similarity=0.160 Sum_probs=37.6
Q ss_pred CcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhh
Q 012482 338 DVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRMWNLS 393 (462)
Q Consensus 338 G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~~~ 393 (462)
..||.+||.+.-++.|+ ++++++++.++..+-.+.=...+-+|=.+++.+.
T Consensus 13 n~iT~~eLlkyskqy~i-----~it~~QA~~I~~~lr~k~inIfn~~~r~~llkei 63 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNI-----SITKKQAEQIANILRGKNINIFNEQERKKLLKEI 63 (85)
T ss_pred hcCCHHHHHHHHHHhCC-----CCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 45899999999999996 8999999888887765554555555555555543
No 171
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=26.39 E-value=95 Score=23.36 Aligned_cols=31 Identities=16% Similarity=0.325 Sum_probs=24.2
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHHHhhhhcc
Q 012482 365 ETDDLWAQADVDGNGVVNYEEFKRMWNLSCSA 396 (462)
Q Consensus 365 e~~~l~~~~D~~~~g~I~~~eF~~~~~~~~~~ 396 (462)
||+.++..+-. +.+.|+.++|.+.+......
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~ 31 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGE 31 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhcc
Confidence 57888988855 78899999999999765433
No 172
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=26.36 E-value=1.4e+02 Score=25.03 Aligned_cols=70 Identities=17% Similarity=0.070 Sum_probs=41.4
Q ss_pred hHHHHHHhhhccCCC-CCcccHHHHHHHHHHcc--cC-CCCCCCC----------HHHHHHHHHhhCCCCCCcccHHHHH
Q 012482 322 LAENDAFAFFKADNN-GDVITHSAFCEALRQVN--LA-GLPYGLS----------FQETDDLWAQADVDGNGVVNYEEFK 387 (462)
Q Consensus 322 ~~~~~~F~~~D~d~~-~G~i~~~el~~~l~~lg--~~-~~~~~~~----------~~e~~~l~~~~D~~~~g~I~~~eF~ 387 (462)
..+.++|+....+.. +..|+..|+..+|..+- +. +.+.... +-.+.-++..+|.+++|.|..-.|.
T Consensus 41 ~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~K 120 (127)
T PF09068_consen 41 SNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSFK 120 (127)
T ss_dssp HHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHHH
T ss_pred HHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHHH
Confidence 456678877755433 37899999999987653 00 0111111 1234557888999999999999997
Q ss_pred HHHh
Q 012482 388 RMWN 391 (462)
Q Consensus 388 ~~~~ 391 (462)
..+.
T Consensus 121 vaL~ 124 (127)
T PF09068_consen 121 VALI 124 (127)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6553
No 173
>PTZ00235 DNA polymerase epsilon subunit B; Provisional
Probab=25.25 E-value=1.5e+02 Score=28.60 Aligned_cols=13 Identities=31% Similarity=0.544 Sum_probs=11.2
Q ss_pred CCEEEeecCCCCC
Q 012482 228 IPIILCGDWNGSK 240 (462)
Q Consensus 228 ~pvIl~GDFN~~p 240 (462)
.-+|+||+|.+.|
T Consensus 65 ~~fVL~GnF~S~p 77 (291)
T PTZ00235 65 VGFIFMGDFISLK 77 (291)
T ss_pred eEEEEecCccCCc
Confidence 3489999999998
No 174
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=24.85 E-value=1e+02 Score=27.33 Aligned_cols=69 Identities=19% Similarity=0.323 Sum_probs=41.0
Q ss_pred hHHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCC--CCHHHHHHHHHhhCCCCCCcccHHHHHHHHhh
Q 012482 322 LAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYG--LSFQETDDLWAQADVDGNGVVNYEEFKRMWNL 392 (462)
Q Consensus 322 ~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~--~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~~ 392 (462)
+.+.++|.++++.+. +.++..|+..+++.-.....+.. -..-|...+... -.+.+|.+.-+.-..++..
T Consensus 96 ~kFe~iF~kya~~~~-d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L-~~d~dG~l~Ke~iR~vYDG 166 (174)
T PF05042_consen 96 QKFEEIFSKYAKTGP-DALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYIL-AKDKDGFLSKEDIRGVYDG 166 (174)
T ss_pred HHHHHHHHHhCCCCC-CCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHH-HcCcCCcEeHHHHhhhcch
Confidence 456789999999888 99999999999977321000000 111222222222 2466788876665555543
No 175
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=24.71 E-value=88 Score=22.78 Aligned_cols=35 Identities=17% Similarity=0.173 Sum_probs=30.5
Q ss_pred CcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCC
Q 012482 338 DVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDG 377 (462)
Q Consensus 338 G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~ 377 (462)
+-++..+|.+.|..-| ..++++.|...++.+|.+|
T Consensus 12 ~P~g~~~l~~~L~~~g-----~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 12 KPLGRKQLAEELKLRG-----EELSEEAVRRRLRAMERDG 46 (66)
T ss_pred CCCCHHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHCC
Confidence 6699999999998878 4888999999999998775
No 176
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=23.84 E-value=1.5e+02 Score=28.25 Aligned_cols=49 Identities=12% Similarity=0.178 Sum_probs=32.2
Q ss_pred CcccHHHHHH---HHHHcccCCCCCCCCHHH---HHHHHHhhCCCCCCcccHHHHHHHHhhhhcc
Q 012482 338 DVITHSAFCE---ALRQVNLAGLPYGLSFQE---TDDLWAQADVDGNGVVNYEEFKRMWNLSCSA 396 (462)
Q Consensus 338 G~i~~~el~~---~l~~lg~~~~~~~~~~~e---~~~l~~~~D~~~~g~I~~~eF~~~~~~~~~~ 396 (462)
|.++..|+.. ++..++ +++++ +.++++.. .....++.+|++.+...+..
T Consensus 70 G~Vse~Ei~~~~~l~~~~~-------l~~~~r~~a~~lf~~~---k~~~~~l~~~~~~~~~~~~~ 124 (267)
T PRK09430 70 GRVTEADIRIASQLMDRMN-------LHGEARRAAQQAFREG---KEPDFPLREKLRQFRSVCGG 124 (267)
T ss_pred CCcCHHHHHHHHHHHHHcC-------CCHHHHHHHHHHHHHh---cccCCCHHHHHHHHHHHhcc
Confidence 8899999872 223345 46666 55555543 34458899999888776543
No 177
>PLN02223 phosphoinositide phospholipase C
Probab=23.48 E-value=2.3e+02 Score=29.96 Aligned_cols=71 Identities=6% Similarity=-0.047 Sum_probs=48.0
Q ss_pred hhHHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCC--------CCCcccHHHHHHHHhh
Q 012482 321 SLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVD--------GNGVVNYEEFKRMWNL 392 (462)
Q Consensus 321 ~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~--------~~g~I~~~eF~~~~~~ 392 (462)
...++++|..+- .+. |..+.+.|...|.-|--...-...+.++++.++..+-.. ..+.++.+.|..++..
T Consensus 15 p~~v~~~f~~~~-~~~-~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 15 PDLILNFFGNEF-HGY-DDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred cHHHHHHHHHhh-cCC-CCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 357788999883 556 889999999998333100011246778888888765322 1356999999998865
Q ss_pred h
Q 012482 393 S 393 (462)
Q Consensus 393 ~ 393 (462)
.
T Consensus 93 ~ 93 (537)
T PLN02223 93 T 93 (537)
T ss_pred c
Confidence 3
No 178
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=22.73 E-value=3.8e+02 Score=21.89 Aligned_cols=51 Identities=16% Similarity=0.148 Sum_probs=39.2
Q ss_pred HHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHH
Q 012482 327 AFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKR 388 (462)
Q Consensus 327 ~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~ 388 (462)
++-..-.-++ ..+|.++++++|...|+ .+.+..+..+++.+.. .+.+|.+.
T Consensus 8 AYlL~~lgG~-~~pTaddI~kIL~AaGv-----eVd~~~~~l~~~~L~G-----KdI~ELIa 58 (112)
T PTZ00373 8 AYLMCVLGGN-ENPTKKEVKNVLSAVNA-----DVEDDVLDNFFKSLEG-----KTPHELIA 58 (112)
T ss_pred HHHHHHHcCC-CCCCHHHHHHHHHHcCC-----CccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 3444444555 67999999999999996 7888899999998852 47787775
No 179
>PLN02952 phosphoinositide phospholipase C
Probab=22.59 E-value=2.1e+02 Score=30.80 Aligned_cols=56 Identities=13% Similarity=0.210 Sum_probs=43.0
Q ss_pred CCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhhhc
Q 012482 335 NNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRMWNLSCS 395 (462)
Q Consensus 335 ~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~~~~~ 395 (462)
+. |.++.++++...+.+-. .......||..++..+-.+ .+.|+.++|.+++.....
T Consensus 13 ~~-g~l~f~~f~~f~~~~k~---~~~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~Q~ 68 (599)
T PLN02952 13 DS-GSYNYKMFNLFNRKFKI---TEAEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVLHQD 68 (599)
T ss_pred cC-CCcCHHHHHHHHHHhcc---ccCCChHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCC
Confidence 46 89999999888777642 0234688999999999643 468999999999986543
No 180
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=22.01 E-value=1.5e+02 Score=21.88 Aligned_cols=53 Identities=13% Similarity=0.043 Sum_probs=31.8
Q ss_pred HhhhHHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHHhh
Q 012482 319 KASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWAQA 373 (462)
Q Consensus 319 ~~~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~~~ 373 (462)
.....+.++...++..-. --|-..+|+.++..||-. .+...+++-++.||+.|
T Consensus 20 ~a~~~l~~a~~~l~~~~~-~dl~a~~L~~A~~~L~~I-tG~~~~ediLd~IFs~F 72 (73)
T PF12631_consen 20 QALEHLEDALEALENGLP-LDLVAEDLREALESLGEI-TGEVVTEDILDNIFSNF 72 (73)
T ss_dssp HHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHH-CTSS--HHHHHHHHCTS
T ss_pred HHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHH-hCCCChHHHHHHHHHhh
Confidence 344456666666665544 457788999999888620 22355667777777654
No 181
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=21.89 E-value=39 Score=28.32 Aligned_cols=52 Identities=21% Similarity=0.213 Sum_probs=35.4
Q ss_pred CcccHHHHHHHHHHc-ccCCCCCCCCHHHHHHHHHhhCCCCCCcccHHHHHHHHhhh
Q 012482 338 DVITHSAFCEALRQV-NLAGLPYGLSFQETDDLWAQADVDGNGVVNYEEFKRMWNLS 393 (462)
Q Consensus 338 G~i~~~el~~~l~~l-g~~~~~~~~~~~e~~~l~~~~D~~~~g~I~~~eF~~~~~~~ 393 (462)
|.|+.+|...+...+ .. ..+++.+.+.++..++.-....+++.+|+..+...
T Consensus 38 G~v~~~E~~~i~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 90 (140)
T PF05099_consen 38 GEVDPEEIEAIRQLLAER----FGLSPEEAEELIELADELKQEPIDLEELLRELRDS 90 (140)
T ss_dssp SS--CHHHHHHHHHHHHC----GCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCTS
T ss_pred CCCCHHHHHHHHHHHHHh----hCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHHh
Confidence 779999988776655 11 13567778888877776656678888888777654
No 182
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=20.95 E-value=1e+02 Score=25.72 Aligned_cols=28 Identities=18% Similarity=0.146 Sum_probs=21.2
Q ss_pred HHHHHhhhccCCCCCcccHHHHHHHHHHc
Q 012482 324 ENDAFAFFKADNNGDVITHSAFCEALRQV 352 (462)
Q Consensus 324 ~~~~F~~~D~d~~~G~i~~~el~~~l~~l 352 (462)
+-.+...||.+++ |.|+.-++|.+|..|
T Consensus 99 ln~Ll~vyD~~rt-G~I~vls~KvaL~~L 126 (127)
T PF09068_consen 99 LNWLLNVYDSQRT-GKIRVLSFKVALITL 126 (127)
T ss_dssp HHHHHHHH-TT---SEEEHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCC-CeeehhHHHHHHHHh
Confidence 3466789999999 999999999998764
No 183
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=20.84 E-value=2.8e+02 Score=18.81 Aligned_cols=39 Identities=10% Similarity=0.094 Sum_probs=29.4
Q ss_pred hhhHHHHHHhhhccCCCCCcccHHHHHHHHHHcccCCCCCCCCHHHHHHHHH
Q 012482 320 ASLAENDAFAFFKADNNGDVITHSAFCEALRQVNLAGLPYGLSFQETDDLWA 371 (462)
Q Consensus 320 ~~~~~~~~F~~~D~d~~~G~i~~~el~~~l~~lg~~~~~~~~~~~e~~~l~~ 371 (462)
+...|.+.|.. + .+++.++...+-..+| ++...|..++.
T Consensus 11 q~~~L~~~f~~-----~-~~p~~~~~~~la~~l~-------l~~~~V~~WF~ 49 (57)
T PF00046_consen 11 QLKVLEEYFQE-----N-PYPSKEEREELAKELG-------LTERQVKNWFQ 49 (57)
T ss_dssp HHHHHHHHHHH-----S-SSCHHHHHHHHHHHHT-------SSHHHHHHHHH
T ss_pred HHHHHHHHHHH-----h-cccccccccccccccc-------ccccccccCHH
Confidence 44556666663 4 7799999888888888 68888888875
Done!