BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012484
(462 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R4M|A Chain A, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|C Chain C, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|E Chain E, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|G Chain G, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4N|A Chain A, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|C Chain C, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|E Chain E, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|G Chain G, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
Length = 529
Score = 328 bits (840), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 182/500 (36%), Positives = 275/500 (55%), Gaps = 50/500 (10%)
Query: 5 KTKYDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGD 64
+ KYDRQLR+WG+ GQ ALE A VCL+N TG+E LKNLVL GIGS T+IDG++V D
Sbjct: 10 EQKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGED 69
Query: 65 LGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVAT 124
GNNF L S +G+++A++ FLQELN V F+EE PE L++ +P FF +FT+VVAT
Sbjct: 70 AGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVAT 129
Query: 125 QLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLNNPW 184
QL E ++L + + + L+ R+YGL G++RI +KEH V+ES PD+ L+DLRL+ P+
Sbjct: 130 QLPESTSLRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPF 189
Query: 185 PELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTXXXXXXXXXXXXX 244
PELR+ +++DL+ + H HTP++VI+ K +W + G +P T
Sbjct: 190 PELREHFQSYDLDHMEKKDHSHTPWIVIIAKYLAQWYSETNGRIPKTYKEKEDFRDLIRQ 249
Query: 245 XMVAI-DEDNYKEAIEASFKVFAPPGIKLALSKVLQSADSSFFPFSIAIGRPWIFAEA-- 301
++ DE+N++EAI+ I ++ + D + WI A A
Sbjct: 250 GILKPEDEENFEEAIKNVNTALNTTQIPSSIEDIFN--DDRCINITKQTPSFWILARALK 307
Query: 302 ----------------------------------------DCLAIEQRVRNNLKKLGREP 321
D A+ V L+ +G+ P
Sbjct: 308 EFVAKEGQGNLPVRGTIPDMIADSGKYIKLQNVYREKAKKDAAAVGNHVAKLLQSIGQAP 367
Query: 322 ESISKATIKSFCRNARKLKVCRYRLLEDEFSNPSV--PDIQKYLTDEDYSVAMGFYILLR 379
ESIS+ +K C N+ L+V R R L +E+ ++ +I + + D + + Y++LR
Sbjct: 368 ESISEKELKLLCSNSAFLRVVRCRSLAEEYGLDTINKDEIISSMDNPDNEIVL--YLMLR 425
Query: 380 AVDRFAANYNNYPGEFDGPMDEDISRLKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAE 439
AVDRF YPG + ++EDI +LK+ L + G + + +D ++E CR+GAAE
Sbjct: 426 AVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLS-VMVKDDYVHEFCRYGAAE 484
Query: 440 LHAVAAFIGGVASQEVIKVV 459
H +AAF+GG A+QEVIK++
Sbjct: 485 PHTIAAFLGGAAAQEVIKII 504
>pdb|1TT5|A Chain A, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
pdb|1TT5|C Chain C, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
pdb|3DBH|A Chain A, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|C Chain C, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|E Chain E, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|G Chain G, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBL|A Chain A, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|C Chain C, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|E Chain E, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|G Chain G, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBR|A Chain A, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|C Chain C, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|E Chain E, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|G Chain G, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
Length = 531
Score = 327 bits (839), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 182/500 (36%), Positives = 275/500 (55%), Gaps = 50/500 (10%)
Query: 5 KTKYDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGD 64
+ KYDRQLR+WG+ GQ ALE A VCL+N TG+E LKNLVL GIGS T+IDG++V D
Sbjct: 12 EQKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGED 71
Query: 65 LGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVAT 124
GNNF L S +G+++A++ FLQELN V F+EE PE L++ +P FF +FT+VVAT
Sbjct: 72 AGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVAT 131
Query: 125 QLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLNNPW 184
QL E ++L + + + L+ R+YGL G++RI +KEH V+ES PD+ L+DLRL+ P+
Sbjct: 132 QLPESTSLRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPF 191
Query: 185 PELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTXXXXXXXXXXXXX 244
PELR+ +++DL+ + H HTP++VI+ K +W + G +P T
Sbjct: 192 PELREHFQSYDLDHMEKKDHSHTPWIVIIAKYLAQWYSETNGRIPKTYKEKEDFRDLIRQ 251
Query: 245 XMVAI-DEDNYKEAIEASFKVFAPPGIKLALSKVLQSADSSFFPFSIAIGRPWIFAEA-- 301
++ DE+N++EAI+ I ++ + D + WI A A
Sbjct: 252 GILKPEDEENFEEAIKNVNTALNTTQIPSSIEDIFN--DDRCINITKQTPSFWILARALK 309
Query: 302 ----------------------------------------DCLAIEQRVRNNLKKLGREP 321
D A+ V L+ +G+ P
Sbjct: 310 EFVAKEGQGNLPVRGTIPDMIADSGKYIKLQNVYREKAKKDAAAVGNHVAKLLQSIGQAP 369
Query: 322 ESISKATIKSFCRNARKLKVCRYRLLEDEFSNPSV--PDIQKYLTDEDYSVAMGFYILLR 379
ESIS+ +K C N+ L+V R R L +E+ ++ +I + + D + + Y++LR
Sbjct: 370 ESISEKELKLLCSNSAFLRVVRCRSLAEEYGLDTINKDEIISSMDNPDNEIVL--YLMLR 427
Query: 380 AVDRFAANYNNYPGEFDGPMDEDISRLKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAE 439
AVDRF YPG + ++EDI +LK+ L + G + + +D ++E CR+GAAE
Sbjct: 428 AVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLS-VMVKDDYVHEFCRYGAAE 486
Query: 440 LHAVAAFIGGVASQEVIKVV 459
H +AAF+GG A+QEVIK++
Sbjct: 487 PHTIAAFLGGAAAQEVIKII 506
>pdb|1YOV|A Chain A, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
pdb|1YOV|C Chain C, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
Length = 537
Score = 326 bits (835), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 182/505 (36%), Positives = 275/505 (54%), Gaps = 55/505 (10%)
Query: 5 KTKYDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGD 64
+ KYDRQLR+WG+ GQ ALE A VCL+N TG+E LKNLVL GIGS T+IDG++V D
Sbjct: 13 EQKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGED 72
Query: 65 LGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVAT 124
GNNF L S +G+++A++ FLQELN V F+EE PE L++ +P FF +FT+VVAT
Sbjct: 73 AGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVAT 132
Query: 125 QLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLNNPW 184
QL E ++L + + + L+ R+YGL G++RI +KEH V+ES PD+ L+DLRL+ P+
Sbjct: 133 QLPESTSLRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPF 192
Query: 185 PELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTXXXXXXXXXXXXX 244
PELR+ +++DL+ + H HTP++VI+ K +W + G +P T
Sbjct: 193 PELREHFQSYDLDHMEKKDHSHTPWIVIIAKYLAQWYSETNGRIPKTYKEKEDFRDLIRQ 252
Query: 245 XMVAI------DEDNYKEAIEASFKVFAPPGIKLALSKVLQSADSSFFPFSIAIGRPWIF 298
++ DE+N++EAI+ I ++ + D + WI
Sbjct: 253 GILKNENGAPEDEENFEEAIKNVNTALNTTQIPSSIEDIFN--DDRCINITKQTPSFWIL 310
Query: 299 AEA------------------------------------------DCLAIEQRVRNNLKK 316
A A D A+ V L+
Sbjct: 311 ARALKEFVAKEGQGNLPVRGTIPDMIADSGKYIKLQNVYREKAKKDAAAVGNHVAKLLQS 370
Query: 317 LGREPESISKATIKSFCRNARKLKVCRYRLLEDEFSNPSV--PDIQKYLTDEDYSVAMGF 374
+G+ PESIS+ +K C N+ L+V R R L +E+ ++ +I + + D + +
Sbjct: 371 IGQAPESISEKELKLLCSNSAFLRVVRCRSLAEEYGLDTINKDEIISSMDNPDNEIVL-- 428
Query: 375 YILLRAVDRFAANYNNYPGEFDGPMDEDISRLKTTAVSVLNDLGCNGSTLTEDLINEMCR 434
Y++LRAVDRF YPG + ++EDI +LK+ L + G + + +D ++E CR
Sbjct: 429 YLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLS-VMVKDDYVHEFCR 487
Query: 435 FGAAELHAVAAFIGGVASQEVIKVV 459
+GAAE H +AAF+GG A+QEVIK++
Sbjct: 488 YGAAEPHTIAAFLGGAAAQEVIKII 512
>pdb|3GZN|A Chain A, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
pdb|3GZN|C Chain C, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
Length = 534
Score = 326 bits (835), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 182/505 (36%), Positives = 275/505 (54%), Gaps = 55/505 (10%)
Query: 5 KTKYDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGD 64
+ KYDRQLR+WG+ GQ ALE A VCL+N TG+E LKNLVL GIGS T+IDG++V D
Sbjct: 10 EQKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGED 69
Query: 65 LGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVAT 124
GNNF L S +G+++A++ FLQELN V F+EE PE L++ +P FF +FT+VVAT
Sbjct: 70 AGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVAT 129
Query: 125 QLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLNNPW 184
QL E ++L + + + L+ R+YGL G++RI +KEH V+ES PD+ L+DLRL+ P+
Sbjct: 130 QLPESTSLRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPF 189
Query: 185 PELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTXXXXXXXXXXXXX 244
PELR+ +++DL+ + H HTP++VI+ K +W + G +P T
Sbjct: 190 PELREHFQSYDLDHMEKKDHSHTPWIVIIAKYLAQWYSETNGRIPKTYKEKEDFRDLIRQ 249
Query: 245 XMVAI------DEDNYKEAIEASFKVFAPPGIKLALSKVLQSADSSFFPFSIAIGRPWIF 298
++ DE+N++EAI+ I ++ + D + WI
Sbjct: 250 GILKNENGAPEDEENFEEAIKNVNTALNTTQIPSSIEDIFN--DDRCINITKQTPSFWIL 307
Query: 299 AEA------------------------------------------DCLAIEQRVRNNLKK 316
A A D A+ V L+
Sbjct: 308 ARALKEFVAKEGQGNLPVRGTIPDMIADSGKYIKLQNVYREKAKKDAAAVGNHVAKLLQS 367
Query: 317 LGREPESISKATIKSFCRNARKLKVCRYRLLEDEFSNPSV--PDIQKYLTDEDYSVAMGF 374
+G+ PESIS+ +K C N+ L+V R R L +E+ ++ +I + + D + +
Sbjct: 368 IGQAPESISEKELKLLCSNSAFLRVVRCRSLAEEYGLDTINKDEIISSMDNPDNEIVL-- 425
Query: 375 YILLRAVDRFAANYNNYPGEFDGPMDEDISRLKTTAVSVLNDLGCNGSTLTEDLINEMCR 434
Y++LRAVDRF YPG + ++EDI +LK+ L + G + + +D ++E CR
Sbjct: 426 YLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLS-VMVKDDYVHEFCR 484
Query: 435 FGAAELHAVAAFIGGVASQEVIKVV 459
+GAAE H +AAF+GG A+QEVIK++
Sbjct: 485 YGAAEPHTIAAFLGGAAAQEVIKII 509
>pdb|2NVU|A Chain A, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 536
Score = 325 bits (834), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 182/505 (36%), Positives = 275/505 (54%), Gaps = 55/505 (10%)
Query: 5 KTKYDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGD 64
+ KYDRQLR+WG+ GQ ALE A VCL+N TG+E LKNLVL GIGS T+IDG++V D
Sbjct: 12 EQKYDRQLRLWGDHGQEALESAHVCLINATATGTEILKNLVLPGIGSFTIIDGNQVSGED 71
Query: 65 LGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVAT 124
GNNF L S +G+++A++ FLQELN V F+EE PE L++ +P FF +FT+VVAT
Sbjct: 72 AGNNFFLQRSSIGKNRAEAAMEFLQELNSDVSGSFVEESPENLLDNDPSFFCRFTVVVAT 131
Query: 125 QLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLNNPW 184
QL E ++L + + + L+ R+YGL G++RI +KEH V+ES PD+ L+DLRL+ P+
Sbjct: 132 QLPESTSLRLADVLWNSQIPLLICRTYGLVGYMRIIIKEHPVIESHPDNALEDLRLDKPF 191
Query: 185 PELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTXXXXXXXXXXXXX 244
PELR+ +++DL+ + H HTP++VI+ K +W + G +P T
Sbjct: 192 PELREHFQSYDLDHMEKKDHSHTPWIVIIAKYLAQWYSETNGRIPKTYKEKEDFRDLIRQ 251
Query: 245 XMVAI------DEDNYKEAIEASFKVFAPPGIKLALSKVLQSADSSFFPFSIAIGRPWIF 298
++ DE+N++EAI+ I ++ + D + WI
Sbjct: 252 GILKNENGAPEDEENFEEAIKNVNTALNTTQIPSSIEDIFN--DDRCINITKQTPSFWIL 309
Query: 299 AEA------------------------------------------DCLAIEQRVRNNLKK 316
A A D A+ V L+
Sbjct: 310 ARALKEFVAKEGQGNLPVRGTIPDMIADSGKYIKLQNVYREKAKKDAAAVGNHVAKLLQS 369
Query: 317 LGREPESISKATIKSFCRNARKLKVCRYRLLEDEFSNPSV--PDIQKYLTDEDYSVAMGF 374
+G+ PESIS+ +K C N+ L+V R R L +E+ ++ +I + + D + +
Sbjct: 370 IGQAPESISEKELKLLCSNSAFLRVVRCRSLAEEYGLDTINKDEIISSMDNPDNEIVL-- 427
Query: 375 YILLRAVDRFAANYNNYPGEFDGPMDEDISRLKTTAVSVLNDLGCNGSTLTEDLINEMCR 434
Y++LRAVDRF YPG + ++EDI +LK+ L + G + + +D ++E CR
Sbjct: 428 YLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFLQEYGLS-VMVKDDYVHEFCR 486
Query: 435 FGAAELHAVAAFIGGVASQEVIKVV 459
+GAAE H +AAF+GG A+QEVIK++
Sbjct: 487 YGAAEPHTIAAFLGGAAAQEVIKII 511
>pdb|1Y8Q|A Chain A, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8Q|C Chain C, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8R|A Chain A, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1Y8R|D Chain D, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|3KYC|A Chain A, Human Sumo E1 Complex With A Sumo1-Amp Mimic
pdb|3KYD|A Chain A, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic
Length = 346
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 88/172 (51%), Gaps = 11/172 (6%)
Query: 3 EPKTKYDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEV 62
E +YDRQ+R+WG + Q L + V L+ G+E KNL+L G+ +T++D +V
Sbjct: 14 EEAAQYDRQIRLWGLEAQKRLRASRVLLVGLKGLGAEIAKNLILAGVKGLTMLDHEQVTP 73
Query: 63 GDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKF----IEEYPEALIEMNPPFFSQF 118
D G F++ VG ++A++ Q LN V K IE+ PE+ FF+QF
Sbjct: 74 EDPGAQFLIRTGSVGRNRAEASLERAQNLNPMVDVKVDTEDIEKKPES-------FFTQF 126
Query: 119 TLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESK 170
V T + ++K+D+IC + ++ +G G+ ++ EH VE K
Sbjct: 127 DAVCLTCCSRDVIVKVDQICHKNSIKFFTGDVFGYHGYTFANLGEHEFVEEK 178
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 375 YILLRAVDRFAANYNNYPGEFDGPMDEDISRLKTTAVSVLNDLGCNGSTLTEDLINEMCR 434
Y LL+ + +F + P +ED L VL+ LG + L ED + R
Sbjct: 240 YFLLQVLLKFRTDKGRDPSS--DTYEEDSELLLQIRNDVLDSLGISPDLLPEDFV----R 293
Query: 435 FGAAELHAVAAFIGGVASQEVIKVV 459
+ +E+ V A +GG+ +QE++K +
Sbjct: 294 YCFSEMAPVCAVVGGILAQEIVKAL 318
>pdb|3CMM|A Chain A, Crystal Structure Of The Uba1-Ubiquitin Complex
pdb|3CMM|C Chain C, Crystal Structure Of The Uba1-Ubiquitin Complex
Length = 1015
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 80/163 (49%), Gaps = 8/163 (4%)
Query: 8 YDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGN 67
Y RQL + G++ ++ ++V +L G E KN+VL G+ S+TV D V++ DL
Sbjct: 10 YSRQLYVLGKEAMLKMQTSNVLILGLKGLGVEIAKNVVLAGVKSMTVFDPEPVQLADLST 69
Query: 68 NFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQ-L 126
F L E +G+ + A L ELN V ++ + SQF +VVAT +
Sbjct: 70 QFFLTEKDIGQKRGDVTRAKLAELNAYVPVNVLDSLDDVTQ------LSQFQVVVATDTV 123
Query: 127 GEEKMIKLDRICREANVMLIFARSYGLTGFVRISV-KEHTVVE 168
E +K++ C + + I + + GL G + + E TV++
Sbjct: 124 SLEDKVKINEFCHSSGIRFISSETRGLFGNTFVDLGDEFTVLD 166
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 73/169 (43%), Gaps = 9/169 (5%)
Query: 6 TKYDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGS-----ITVIDGSKV 60
++YD Q+ ++G Q + + V L+ G G E LKN L G+GS I V D +
Sbjct: 406 SRYDNQIAVFGLDFQKKIANSKVFLVGSGAIGCEMLKNWALLGLGSGSDGYIVVTDNDSI 465
Query: 61 EVGDLGNNFMLDESCVGESK----AKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFS 116
E +L F+ VG++K A++VCA +L + AK + PE N F+
Sbjct: 466 EKSNLNRQFLFRPKDVGKNKSEVAAEAVCAMNPDLKGKINAKIDKVGPETEEIFNDSFWE 525
Query: 117 QFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHT 165
V + +DR C L+ + + G G ++ + T
Sbjct: 526 SLDFVTNALDNVDARTYVDRRCVFYRKPLLESGTLGTKGNTQVIIPRLT 574
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 26/133 (19%)
Query: 338 KLKVCR---YRLLEDEFSNPSV--PDIQKYLTDEDYSVAMGFYILLRAVDRFAANYNNYP 392
++KV R ++ L+ + SNP D K+ D + +GF +A+ +FA +N
Sbjct: 248 EVKVPRKISFKSLKQQLSNPEFVFSDFAKF--DRAAQLHLGF----QALHQFAVRHN--- 298
Query: 393 GEFDGPM-DEDISRLKTTAVSVLNDLGCN-------GSTLTEDLINEMCRFGAAELHAVA 444
GE M DED + L + ++ DL G + EDLI E+ ++ V
Sbjct: 299 GELPRTMNDEDANEL----IKLVTDLSVQQPEVLGEGVDVNEDLIKELSYQARGDIPGVV 354
Query: 445 AFIGGVASQEVIK 457
AF GG+ +QEV+K
Sbjct: 355 AFFGGLVAQEVLK 367
>pdb|4II2|A Chain A, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
pdb|4II3|A Chain A, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme
1 (uba1) In Complex With Ubiquitin And Atp/mg
pdb|4II3|C Chain C, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme
1 (uba1) In Complex With Ubiquitin And Atp/mg
Length = 1001
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 72/150 (48%), Gaps = 7/150 (4%)
Query: 8 YDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGN 67
Y RQL + G + + +++V ++ C G E KN+ L G+ S+T+ D + DL +
Sbjct: 9 YSRQLYVLGHEAMKQMSQSNVLIIGCKGLGVEIAKNVCLAGVKSVTLYDPQPTRIEDLSS 68
Query: 68 NFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLG 127
+ L E +G +AK + L ELN V ++ E++ + F VV T+
Sbjct: 69 QYFLTEDDIGVPRAKVTVSKLAELNQYVPVSVVD-------ELSTEYLKNFKCVVVTETS 121
Query: 128 EEKMIKLDRICREANVMLIFARSYGLTGFV 157
K ++++ + ++ I A S GL G +
Sbjct: 122 LTKQLEINDFTHKNHIAYIAADSRGLFGSI 151
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 11/169 (6%)
Query: 7 KYDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGI-----GSITVIDGSKVE 61
+YD Q+ ++G + Q + S L+ G G E LKN + G+ G I+V D +E
Sbjct: 398 RYDGQIAVFGSEFQEKIASLSTFLVGAGAIGCEMLKNWAMMGVATGESGHISVTDMDSIE 457
Query: 62 VGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY-----PEALIEMNPPFFS 116
+L F+ VG+ K++ + +N ++ K I Y PE+ FF
Sbjct: 458 KSNLNRQFLFRPRDVGKLKSECASTAVSIMNPSLTGK-ITSYQERVGPESEGIFGDEFFE 516
Query: 117 QFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHT 165
+ +LV E + +DR C L+ + + G G ++ V T
Sbjct: 517 KLSLVTNALDNVEARMYVDRRCVFFEKPLLESGTLGTKGNTQVVVPHLT 565
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 424 LTEDLINEMCRFGAAELHAVAAFIGGVASQEVIKVV 459
L E LI E+ +L A++AF+GG +QEV+K
Sbjct: 327 LDEKLIKEISYQARGDLVAMSAFLGGAVAQEVLKAT 362
>pdb|3KYD|B Chain B, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic
Length = 551
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/193 (28%), Positives = 79/193 (40%), Gaps = 32/193 (16%)
Query: 22 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKA 81
A+ V ++ G G E LKNLVL G I +ID ++V +L F+ + VG SKA
Sbjct: 16 AVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKA 75
Query: 82 KSVCAFLQELNDAVKAKFIEEYPEALIE------MNP----PFFSQFTLVVATQLGEEKM 131
+ K ++ YP+A I MNP FF QF LV+
Sbjct: 76 Q-----------VAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAAR 124
Query: 132 IKLDRICREANVMLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRLNNPWPELRKFA 191
++R+C A+V LI + + G G +++ + V E H P P R F
Sbjct: 125 NHVNRMCLAADVPLIESGTAGYLG--QVTTIKKGVTECYECH---------PKPTQRTFP 173
Query: 192 ETFDLNVPDPVAH 204
N P H
Sbjct: 174 GCTIRNTPSEPIH 186
>pdb|1Y8Q|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8Q|D Chain D, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8R|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1Y8R|E Chain E, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
Length = 640
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 66/146 (45%), Gaps = 21/146 (14%)
Query: 22 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKA 81
A+ V ++ G G E LKNLVL G I +ID ++V +L F+ + VG SKA
Sbjct: 14 AVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKA 73
Query: 82 KSVCAFLQELNDAVKAKFIEEYPEALIE------MNP----PFFSQFTLVVATQLGEEKM 131
+ K ++ YP+A I MNP FF QF LV+
Sbjct: 74 Q-----------VAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAAR 122
Query: 132 IKLDRICREANVMLIFARSYGLTGFV 157
++R+C A+V LI + + G G V
Sbjct: 123 NHVNRMCLAADVPLIESGTAGYLGQV 148
>pdb|3KYC|B Chain B, Human Sumo E1 Complex With A Sumo1-Amp Mimic
Length = 660
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/146 (31%), Positives = 66/146 (45%), Gaps = 21/146 (14%)
Query: 22 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKA 81
A+ V ++ G G E LKNLVL G I +ID ++V +L F+ + VG SKA
Sbjct: 34 AVAGGRVLVVGAGGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKA 93
Query: 82 KSVCAFLQELNDAVKAKFIEEYPEALIE------MNP----PFFSQFTLVVATQLGEEKM 131
+ K ++ YP+A I MNP FF QF LV+
Sbjct: 94 Q-----------VAKESVLQFYPKANIVAYHDSIMNPDYNVEFFRQFILVMNALDNRAAR 142
Query: 132 IKLDRICREANVMLIFARSYGLTGFV 157
++R+C A+V LI + + G G V
Sbjct: 143 NHVNRMCLAADVPLIESGTAGYLGQV 168
>pdb|3DBL|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
Length = 434
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 17 EQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCV 76
E Q L+ V ++ G G E LKNL L G I VID ++V +L F+ +
Sbjct: 32 ESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI 91
Query: 77 GESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVV 122
G KA+ F LND V + + + + N F+ QF ++V
Sbjct: 92 GRPKAEVAAEF---LNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIV 134
>pdb|3DBR|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
Length = 434
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 17 EQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCV 76
E Q L+ V ++ G G E LKNL L G I VID ++V +L F+ +
Sbjct: 32 ESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI 91
Query: 77 GESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVV 122
G KA+ F LND V + + + + N F+ QF ++V
Sbjct: 92 GRPKAEVAAEF---LNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIV 134
>pdb|3DBH|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
Length = 434
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 17 EQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCV 76
E Q L+ V ++ G G E LKNL L G I VID ++V +L F+ +
Sbjct: 32 ESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI 91
Query: 77 GESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVV 122
G KA+ F LND V + + + + N F+ QF ++V
Sbjct: 92 GRPKAEVAAEF---LNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIV 134
>pdb|1R4M|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|D Chain D, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|F Chain F, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|H Chain H, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4N|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|D Chain D, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|F Chain F, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|H Chain H, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
Length = 431
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 17 EQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCV 76
E Q L+ V ++ G G E LKNL L G I VID ++V +L F+ +
Sbjct: 29 ESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI 88
Query: 77 GESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVV 122
G KA+ F LND V + + + + N F+ QF ++V
Sbjct: 89 GRPKAEVAAEF---LNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIV 131
>pdb|1TT5|B Chain B, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
pdb|1TT5|D Chain D, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
Length = 434
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 17 EQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCV 76
E Q L+ V ++ G G E LKNL L G I VID ++V +L F+ +
Sbjct: 32 ESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI 91
Query: 77 GESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVV 122
G KA+ F LND V + + + + N F+ QF ++V
Sbjct: 92 GRPKAEVAAEF---LNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIV 134
>pdb|3GZN|B Chain B, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
pdb|3GZN|D Chain D, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
Length = 463
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 3/106 (2%)
Query: 17 EQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCV 76
E Q L+ V ++ G G E LKNL L G I VID ++V +L F+ +
Sbjct: 61 ESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI 120
Query: 77 GESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVV 122
G KA+ F LND V + + + + N F+ QF ++V
Sbjct: 121 GRPKAEVAAEF---LNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIV 163
>pdb|1YOV|B Chain B, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
pdb|1YOV|D Chain D, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
Length = 444
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 60/135 (44%), Gaps = 10/135 (7%)
Query: 17 EQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCV 76
E Q L+ V ++ G G E LKNL L G I VID ++V +L F+ +
Sbjct: 42 ESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI 101
Query: 77 GESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDR 136
G KA+ F LND V + + + + N F+ QF ++V G + +I
Sbjct: 102 GRPKAEVAAEF---LNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVC---GLDSIIAR-- 153
Query: 137 ICREANVMLIFARSY 151
R N MLI +Y
Sbjct: 154 --RWINGMLISLLNY 166
>pdb|2NVU|B Chain B, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 805
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 59/137 (43%), Gaps = 14/137 (10%)
Query: 17 EQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCV 76
E Q L+ V ++ G G E LKNL L G I VID ++V +L F+ +
Sbjct: 403 ESLQFLLDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDI 462
Query: 77 GESKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDR 136
G KA+ F LND V + + + + N F+ QF ++V LD
Sbjct: 463 GRPKAEVAAEF---LNDRVPNCNVVPHFNKIQDFNDTFYRQFHIIVC---------GLDS 510
Query: 137 IC--REANVMLIFARSY 151
I R N MLI +Y
Sbjct: 511 IIARRWINGMLISLLNY 527
>pdb|3H5A|A Chain A, Crystal Structure Of E. Coli Mccb
pdb|3H5A|B Chain B, Crystal Structure Of E. Coli Mccb
pdb|3H5A|C Chain C, Crystal Structure Of E. Coli Mccb
pdb|3H5A|D Chain D, Crystal Structure Of E. Coli Mccb
Length = 358
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%)
Query: 20 QAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGES 79
Q L+ A V +L CG G+ L GIG I +ID ++E +L + E VG++
Sbjct: 110 QDKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKN 169
Query: 80 KAKSV 84
K + +
Sbjct: 170 KTEVI 174
>pdb|3H5N|A Chain A, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5N|B Chain B, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5N|C Chain C, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5N|D Chain D, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5R|A Chain A, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H5R|B Chain B, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H5R|C Chain C, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H5R|D Chain D, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H9G|A Chain A, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9G|B Chain B, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9G|C Chain C, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9G|D Chain D, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9J|A Chain A, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9J|B Chain B, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9J|C Chain C, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9J|D Chain D, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9Q|A Chain A, Crystal Structure Of E. Coli Mccb + Semet Mcca
pdb|3H9Q|B Chain B, Crystal Structure Of E. Coli Mccb + Semet Mcca
pdb|3H9Q|C Chain C, Crystal Structure Of E. Coli Mccb + Semet Mcca
pdb|3H9Q|D Chain D, Crystal Structure Of E. Coli Mccb + Semet Mcca
Length = 353
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%)
Query: 20 QAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGES 79
Q L+ A V +L CG G+ L GIG I +ID ++E +L + E VG++
Sbjct: 113 QDKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKN 172
Query: 80 KAKSV 84
K + +
Sbjct: 173 KTEVI 177
>pdb|1JWB|B Chain B, Structure Of The Covalent Acyl-Adenylate Form Of The
Moeb-Moad Protein Complex
pdb|1JWA|B Chain B, Structure Of The Atp-Bound Moeb-Moad Protein Complex
pdb|1JW9|B Chain B, Structure Of The Native Moeb-Moad Protein Complex
Length = 249
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 7 KYDRQ--LRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGD 64
+Y+RQ LR + GQ AL+ + V ++ G G + L G+G++T++D V + +
Sbjct: 11 RYNRQIILRGFDFDGQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSN 70
Query: 65 LGNNFMLDESCVGESKAKSVCAFLQELN 92
L + ++ VG+ K +S L +N
Sbjct: 71 LQRQTLHSDATVGQPKVESARDALTRIN 98
>pdb|3SS6|A Chain A, Crystal Structure Of The Bacillus Anthracis Acetyl-Coa
Acetyltransferase
pdb|3SS6|B Chain B, Crystal Structure Of The Bacillus Anthracis Acetyl-Coa
Acetyltransferase
Length = 394
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 4/80 (5%)
Query: 357 PDIQKYLTDEDYSVAMGFYILLRAVDRFAANYNNYPGEFDGPMDEDISRLKTTAVSVLND 416
P I+K L D+S+ LL + FAA Y E D +D + + + V + +
Sbjct: 296 PAIRKGLEKVDWSLEDAD--LLEINEAFAAQYLAVEKELD--LDREKVNVNGSGVGLGHP 351
Query: 417 LGCNGSTLTEDLINEMCRFG 436
+GC G+ +T LI+E+ R G
Sbjct: 352 IGCTGARITVSLIHELKRRG 371
>pdb|3F8M|A Chain A, Crystal Structure Of Phnf From Mycobacterium Smegmatis
pdb|3F8M|B Chain B, Crystal Structure Of Phnf From Mycobacterium Smegmatis
Length = 248
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 23/34 (67%)
Query: 163 EHTVVESKPDHFLDDLRLNNPWPELRKFAETFDL 196
+H VV ++ D LD +R+ +P+P R+ AE F++
Sbjct: 15 KHQVVRAELDRMLDGMRIGDPFPAEREIAEQFEV 48
>pdb|3NMZ|A Chain A, Crytal Structure Of Apc Complexed With Asef
pdb|3NMZ|B Chain B, Crytal Structure Of Apc Complexed With Asef
Length = 458
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 36/84 (42%), Gaps = 16/84 (19%)
Query: 158 RISVKEHTVVESKPD-----------HFLDDLRLNNP----WPELRKFAETFDLN-VPDP 201
R S H ++ S+PD H L+ +R W E + D N +P P
Sbjct: 101 RASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAP 160
Query: 202 VAHKHTPYVVILIKMSEEWTNSHG 225
V H+ P V +L+K+S + + H
Sbjct: 161 VEHQICPAVCVLMKLSFDEEHRHA 184
>pdb|1PXY|A Chain A, Crystal Structure Of The Actin-Crosslinking Core Of
Arabidopsis Fimbrin
pdb|1PXY|B Chain B, Crystal Structure Of The Actin-Crosslinking Core Of
Arabidopsis Fimbrin
Length = 506
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 26/142 (18%)
Query: 290 IAIGRPWIFAEADCLAIEQRVRNNLKKLGREPESISKATIKSFCRNARKLKVCRYRLLED 349
+ +G W L + + +R+ + LG+E ++ A I S+ RK++ +L +
Sbjct: 368 LILGLLWQLMRFHMLQLLKSLRS--RTLGKE---MTDADILSWAN--RKVRTMGRKLQIE 420
Query: 350 EFSNPSVPDIQKYLTDEDYSVAMGFYILLRAVDRFAANYNNYP-GEFDGPMDEDISRLKT 408
F D+ S + F LL AV+ N+N GE D D RL
Sbjct: 421 SFK------------DKSLSSGLFFLNLLWAVEPRVVNWNLVTKGETD-----DEKRLNA 463
Query: 409 T-AVSVLNDLGCNGSTLTEDLI 429
T VSV LGC+ L ED++
Sbjct: 464 TYIVSVARKLGCSVFLLPEDIV 485
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,025,595
Number of Sequences: 62578
Number of extensions: 509964
Number of successful extensions: 1200
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1148
Number of HSP's gapped (non-prelim): 42
length of query: 462
length of database: 14,973,337
effective HSP length: 102
effective length of query: 360
effective length of database: 8,590,381
effective search space: 3092537160
effective search space used: 3092537160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)