Query 012484
Match_columns 462
No_of_seqs 267 out of 1754
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 03:07:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012484.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012484hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2016 NEDD8-activating compl 100.0 2E-105 4E-110 779.0 38.2 457 1-460 3-499 (523)
2 cd01493 APPBP1_RUB Ubiquitin a 100.0 2.4E-87 5.3E-92 682.5 37.7 341 6-346 1-381 (425)
3 KOG2012 Ubiquitin activating e 100.0 8.2E-61 1.8E-65 494.9 13.8 360 4-460 16-376 (1013)
4 TIGR01408 Ube1 ubiquitin-activ 100.0 1.2E-56 2.5E-61 497.0 20.7 360 3-460 2-366 (1008)
5 KOG2014 SMT3/SUMO-activating c 100.0 8.6E-50 1.9E-54 374.0 18.8 294 4-460 10-304 (331)
6 cd01491 Ube1_repeat1 Ubiquitin 100.0 4.3E-49 9.3E-54 381.7 11.0 156 7-168 1-156 (286)
7 cd01492 Aos1_SUMO Ubiquitin ac 100.0 4.7E-39 1E-43 298.4 16.2 153 6-161 2-154 (197)
8 cd01485 E1-1_like Ubiquitin ac 100.0 1.2E-38 2.7E-43 296.0 14.8 155 7-161 1-157 (198)
9 TIGR02356 adenyl_thiF thiazole 100.0 8E-37 1.7E-41 285.0 16.5 167 7-186 1-169 (202)
10 PRK05690 molybdopterin biosynt 100.0 2.5E-36 5.5E-41 289.4 16.9 202 4-222 9-212 (245)
11 PRK08223 hypothetical protein; 100.0 2.3E-35 4.9E-40 284.4 19.1 156 5-163 7-165 (287)
12 TIGR02355 moeB molybdopterin s 100.0 3.7E-35 7.9E-40 280.2 18.2 201 5-222 2-204 (240)
13 PRK08328 hypothetical protein; 100.0 2.5E-35 5.3E-40 280.3 16.9 196 4-221 6-203 (231)
14 PRK05597 molybdopterin biosynt 100.0 1.8E-35 3.9E-40 298.1 16.3 206 3-224 4-211 (355)
15 PRK07411 hypothetical protein; 100.0 2.3E-35 4.9E-40 300.7 17.2 205 4-224 15-221 (390)
16 cd00757 ThiF_MoeB_HesA_family 100.0 4.7E-35 1E-39 278.5 17.2 155 7-163 1-157 (228)
17 TIGR01408 Ube1 ubiquitin-activ 100.0 1.9E-33 4E-38 312.4 32.1 183 4-190 398-588 (1008)
18 PRK07878 molybdopterin biosynt 100.0 2.4E-34 5.2E-39 293.8 17.9 206 5-224 20-229 (392)
19 PRK05600 thiamine biosynthesis 100.0 2.7E-34 6E-39 290.1 17.1 208 4-224 18-227 (370)
20 PRK12475 thiamine/molybdopteri 100.0 2.4E-33 5.2E-38 280.2 18.0 200 5-222 2-205 (338)
21 PRK07688 thiamine/molybdopteri 100.0 6.6E-33 1.4E-37 277.2 18.2 201 5-223 2-206 (339)
22 cd01489 Uba2_SUMO Ubiquitin ac 100.0 1.2E-30 2.6E-35 256.0 27.1 141 27-168 1-142 (312)
23 COG0476 ThiF Dinucleotide-util 100.0 3.9E-31 8.4E-36 255.9 17.4 202 3-222 6-213 (254)
24 PRK08762 molybdopterin biosynt 100.0 5.7E-31 1.2E-35 268.3 19.0 205 5-223 113-321 (376)
25 cd01490 Ube1_repeat2 Ubiquitin 100.0 2.5E-29 5.5E-34 255.5 30.3 139 27-165 1-146 (435)
26 cd01484 E1-2_like Ubiquitin ac 100.0 4E-31 8.7E-36 250.2 16.1 142 27-168 1-143 (234)
27 PRK15116 sulfur acceptor prote 100.0 1.1E-30 2.4E-35 251.0 12.8 144 4-150 9-154 (268)
28 cd01488 Uba3_RUB Ubiquitin act 100.0 5E-30 1.1E-34 249.0 16.2 136 27-165 1-144 (291)
29 PRK14852 hypothetical protein; 100.0 6.6E-30 1.4E-34 277.8 15.7 159 5-165 312-472 (989)
30 KOG2017 Molybdopterin synthase 100.0 9.5E-31 2.1E-35 249.5 7.8 199 4-222 43-247 (427)
31 PRK14851 hypothetical protein; 100.0 7.7E-30 1.7E-34 273.9 14.7 159 4-165 22-183 (679)
32 PTZ00245 ubiquitin activating 100.0 9.5E-30 2.1E-34 236.0 12.0 119 4-131 5-123 (287)
33 PF00899 ThiF: ThiF family; I 100.0 8.4E-29 1.8E-33 216.6 14.5 134 24-159 1-134 (135)
34 PRK08644 thiamine biosynthesis 100.0 1.9E-28 4.1E-33 229.8 13.8 154 4-160 7-161 (212)
35 cd01483 E1_enzyme_family Super 100.0 5.3E-28 1.1E-32 213.7 14.5 133 27-161 1-133 (143)
36 cd00755 YgdL_like Family of ac 100.0 9.2E-28 2E-32 227.1 14.0 137 15-153 1-138 (231)
37 KOG2013 SMT3/SUMO-activating c 99.9 7.2E-28 1.6E-32 238.1 7.9 154 18-172 5-159 (603)
38 PRK07877 hypothetical protein; 99.9 1.3E-26 2.9E-31 249.4 13.7 147 6-158 88-235 (722)
39 COG1179 Dinucleotide-utilizing 99.9 2.4E-26 5.3E-31 211.4 10.7 145 4-151 9-155 (263)
40 KOG2015 NEDD8-activating compl 99.9 1.1E-25 2.4E-30 212.9 12.7 147 16-165 31-187 (422)
41 TIGR03603 cyclo_dehy_ocin bact 99.9 4E-25 8.7E-30 218.9 14.8 142 5-163 52-199 (318)
42 cd01487 E1_ThiF_like E1_ThiF_l 99.9 8.7E-25 1.9E-29 199.0 14.8 132 27-161 1-133 (174)
43 TIGR01381 E1_like_apg7 E1-like 99.9 1.3E-24 2.7E-29 227.2 17.7 150 13-163 326-493 (664)
44 cd01486 Apg7 Apg7 is an E1-lik 99.9 4.7E-25 1E-29 212.6 13.3 136 27-163 1-153 (307)
45 KOG2012 Ubiquitin activating e 99.9 5.1E-25 1.1E-29 229.7 12.0 160 6-165 411-577 (1013)
46 TIGR02354 thiF_fam2 thiamine b 99.9 9.8E-24 2.1E-28 196.1 13.2 143 11-158 7-151 (200)
47 PRK06153 hypothetical protein; 99.9 5.8E-22 1.3E-26 197.0 13.4 129 17-150 168-299 (393)
48 TIGR03736 PRTRC_ThiF PRTRC sys 99.9 3.1E-21 6.8E-26 183.0 12.5 132 23-161 9-153 (244)
49 KOG2018 Predicted dinucleotide 99.8 4.3E-20 9.3E-25 174.5 9.8 141 8-151 57-199 (430)
50 KOG2336 Molybdopterin biosynth 99.7 1.9E-16 4.2E-21 147.7 13.1 159 6-165 60-233 (422)
51 KOG2337 Ubiquitin activating E 99.4 1.6E-13 3.5E-18 137.9 8.3 145 18-163 333-495 (669)
52 TIGR03693 ocin_ThiF_like putat 99.4 3.4E-12 7.4E-17 133.2 11.2 138 5-159 103-251 (637)
53 COG4015 Predicted dinucleotide 98.6 3.4E-07 7.4E-12 79.7 9.2 123 25-156 18-146 (217)
54 PRK06718 precorrin-2 dehydroge 97.7 0.00038 8.3E-09 65.0 11.6 95 22-149 7-101 (202)
55 PF01488 Shikimate_DH: Shikima 97.7 0.0001 2.3E-09 64.2 6.3 78 22-128 9-86 (135)
56 TIGR01470 cysG_Nterm siroheme 97.6 0.00081 1.8E-08 62.9 11.2 105 23-159 7-111 (205)
57 PRK12549 shikimate 5-dehydroge 97.5 0.00028 6E-09 69.5 8.4 76 23-125 125-200 (284)
58 COG1748 LYS9 Saccharopine dehy 97.5 0.00033 7.1E-09 71.2 8.3 98 26-150 2-100 (389)
59 PRK06719 precorrin-2 dehydroge 97.3 0.0038 8.3E-08 55.8 11.6 86 22-142 10-95 (157)
60 PF13241 NAD_binding_7: Putati 97.2 0.0013 2.8E-08 54.4 7.1 88 22-148 4-91 (103)
61 PRK05562 precorrin-2 dehydroge 97.1 0.0073 1.6E-07 57.0 11.8 98 22-153 22-121 (223)
62 PRK04148 hypothetical protein; 96.6 0.012 2.5E-07 51.0 8.5 94 24-149 16-109 (134)
63 COG0569 TrkA K+ transport syst 96.6 0.018 3.9E-07 54.7 10.4 99 26-150 1-100 (225)
64 COG0373 HemA Glutamyl-tRNA red 96.4 0.0046 1E-07 63.3 5.6 75 22-128 175-249 (414)
65 PF03435 Saccharop_dh: Sacchar 96.4 0.0076 1.6E-07 62.0 7.3 95 28-147 1-96 (386)
66 TIGR01809 Shik-DH-AROM shikima 96.4 0.0079 1.7E-07 59.2 6.9 77 23-126 123-199 (282)
67 PRK14027 quinate/shikimate deh 96.4 0.009 2E-07 58.7 7.1 79 23-126 125-203 (283)
68 PRK12548 shikimate 5-dehydroge 96.3 0.016 3.4E-07 57.2 8.5 84 23-125 124-207 (289)
69 COG0169 AroE Shikimate 5-dehyd 96.3 0.015 3.3E-07 56.9 7.9 75 24-126 125-199 (283)
70 PRK10637 cysG siroheme synthas 96.2 0.044 9.6E-07 57.7 11.4 106 22-159 9-114 (457)
71 PRK00258 aroE shikimate 5-dehy 96.1 0.02 4.2E-07 56.2 7.7 74 23-126 121-194 (278)
72 TIGR03882 cyclo_dehyd_2 bacter 96.0 0.042 9E-07 50.9 9.2 84 16-159 96-180 (193)
73 PF03446 NAD_binding_2: NAD bi 96.0 0.01 2.2E-07 53.3 4.8 117 26-153 2-123 (163)
74 PF00056 Ldh_1_N: lactate/mala 95.9 0.029 6.2E-07 49.2 7.4 73 27-126 2-78 (141)
75 PRK13940 glutamyl-tRNA reducta 95.9 0.012 2.6E-07 61.0 5.5 35 22-56 178-212 (414)
76 PRK12749 quinate/shikimate deh 95.8 0.04 8.7E-07 54.3 8.7 83 23-125 122-204 (288)
77 COG1648 CysG Siroheme synthase 95.8 0.044 9.6E-07 51.4 8.4 100 22-153 9-108 (210)
78 cd01065 NAD_bind_Shikimate_DH 95.7 0.023 4.9E-07 50.2 5.8 35 23-57 17-51 (155)
79 PRK00066 ldh L-lactate dehydro 95.4 0.064 1.4E-06 53.6 8.6 74 25-125 6-81 (315)
80 PF02254 TrkA_N: TrkA-N domain 95.4 0.1 2.2E-06 43.6 8.6 87 28-142 1-87 (116)
81 PF03807 F420_oxidored: NADP o 95.4 0.041 9E-07 44.4 6.0 89 27-148 1-93 (96)
82 cd05291 HicDH_like L-2-hydroxy 95.3 0.038 8.1E-07 55.0 6.5 32 26-57 1-33 (306)
83 cd05213 NAD_bind_Glutamyl_tRNA 95.2 0.058 1.3E-06 53.8 7.6 35 23-57 176-210 (311)
84 PRK14106 murD UDP-N-acetylmura 95.2 0.085 1.8E-06 55.3 9.2 36 23-59 3-38 (450)
85 cd05311 NAD_bind_2_malic_enz N 95.1 0.026 5.6E-07 53.6 4.5 38 22-59 22-61 (226)
86 PF01113 DapB_N: Dihydrodipico 95.1 0.14 3E-06 43.8 8.4 98 27-153 2-101 (124)
87 PLN00203 glutamyl-tRNA reducta 95.0 0.041 8.9E-07 58.6 6.0 34 23-56 264-297 (519)
88 cd05290 LDH_3 A subgroup of L- 94.9 0.13 2.8E-06 51.2 9.0 70 27-125 1-76 (307)
89 PRK09599 6-phosphogluconate de 94.9 0.06 1.3E-06 53.4 6.7 118 27-153 2-123 (301)
90 PRK09496 trkA potassium transp 94.7 0.17 3.6E-06 53.1 9.7 96 23-144 229-324 (453)
91 cd05293 LDH_1 A subgroup of L- 94.5 0.11 2.3E-06 51.9 7.3 73 25-125 3-79 (312)
92 PTZ00142 6-phosphogluconate de 94.5 0.075 1.6E-06 56.0 6.4 123 26-153 2-130 (470)
93 PRK09496 trkA potassium transp 94.5 0.25 5.4E-06 51.8 10.4 96 27-149 2-98 (453)
94 PLN02602 lactate dehydrogenase 94.2 0.12 2.6E-06 52.3 7.0 73 26-126 38-114 (350)
95 PTZ00082 L-lactate dehydrogena 94.2 0.15 3.2E-06 51.2 7.5 35 23-57 4-38 (321)
96 cd00300 LDH_like L-lactate deh 94.1 0.14 3E-06 50.9 7.2 71 28-126 1-75 (300)
97 COG1893 ApbA Ketopantoate redu 94.0 0.43 9.4E-06 47.5 10.4 29 26-55 1-29 (307)
98 PF00070 Pyr_redox: Pyridine n 94.0 0.1 2.2E-06 40.6 4.7 54 27-92 1-54 (80)
99 PLN02819 lysine-ketoglutarate 94.0 0.34 7.4E-06 55.6 10.6 97 24-148 568-678 (1042)
100 cd05191 NAD_bind_amino_acid_DH 94.0 0.092 2E-06 41.7 4.5 38 22-59 20-57 (86)
101 cd01078 NAD_bind_H4MPT_DH NADP 93.8 0.21 4.6E-06 46.0 7.3 81 22-127 25-107 (194)
102 PLN02350 phosphogluconate dehy 93.7 0.31 6.7E-06 51.7 9.2 123 26-153 7-136 (493)
103 TIGR00873 gnd 6-phosphoglucona 93.7 0.15 3.3E-06 53.7 6.9 121 27-153 1-127 (467)
104 PRK07634 pyrroline-5-carboxyla 93.6 0.29 6.2E-06 46.8 8.1 26 24-49 3-28 (245)
105 PRK00811 spermidine synthase; 93.5 0.68 1.5E-05 45.5 10.7 76 24-124 76-157 (283)
106 PF02826 2-Hacid_dh_C: D-isome 93.4 0.07 1.5E-06 48.6 3.3 43 17-60 28-70 (178)
107 PF01210 NAD_Gly3P_dh_N: NAD-d 93.3 0.03 6.5E-07 50.0 0.7 32 27-59 1-32 (157)
108 PRK12490 6-phosphogluconate de 93.3 0.24 5.3E-06 49.0 7.2 118 27-153 2-123 (299)
109 TIGR00872 gnd_rel 6-phosphoglu 93.2 0.17 3.8E-06 50.0 6.1 117 27-152 2-121 (298)
110 TIGR01759 MalateDH-SF1 malate 93.2 0.18 4E-06 50.5 6.1 31 26-56 4-41 (323)
111 TIGR02992 ectoine_eutC ectoine 93.0 0.29 6.3E-06 49.2 7.4 75 25-127 129-204 (326)
112 PRK03562 glutathione-regulated 93.0 0.35 7.5E-06 53.0 8.5 90 25-142 400-489 (621)
113 PRK06130 3-hydroxybutyryl-CoA 93.0 0.56 1.2E-05 46.6 9.3 32 26-58 5-36 (311)
114 PRK01438 murD UDP-N-acetylmura 92.9 0.42 9.1E-06 50.6 8.7 35 23-58 14-48 (480)
115 PRK05708 2-dehydropantoate 2-r 92.9 0.52 1.1E-05 46.8 8.9 32 25-57 2-33 (305)
116 PRK06522 2-dehydropantoate 2-r 92.9 0.58 1.3E-05 46.1 9.2 30 27-57 2-31 (304)
117 KOG4169 15-hydroxyprostaglandi 92.8 0.15 3.2E-06 47.9 4.4 61 23-104 3-64 (261)
118 PRK06141 ornithine cyclodeamin 92.7 0.5 1.1E-05 47.2 8.5 76 23-127 123-199 (314)
119 PRK11880 pyrroline-5-carboxyla 92.6 0.42 9.1E-06 46.3 7.7 31 26-56 3-35 (267)
120 PRK07502 cyclohexadienyl dehyd 92.6 0.63 1.4E-05 46.2 9.1 33 25-57 6-39 (307)
121 PRK07679 pyrroline-5-carboxyla 92.6 0.4 8.7E-06 46.9 7.5 25 25-49 3-27 (279)
122 PRK03659 glutathione-regulated 92.4 0.47 1E-05 51.8 8.5 90 25-142 400-489 (601)
123 PRK08618 ornithine cyclodeamin 92.4 0.38 8.3E-06 48.3 7.2 78 24-129 126-204 (325)
124 TIGR00507 aroE shikimate 5-deh 92.3 0.45 9.7E-06 46.4 7.4 32 24-56 116-147 (270)
125 PRK12491 pyrroline-5-carboxyla 92.2 0.58 1.3E-05 45.7 8.1 32 25-56 2-36 (272)
126 PRK10537 voltage-gated potassi 92.2 0.64 1.4E-05 47.9 8.8 38 20-58 235-272 (393)
127 TIGR01915 npdG NADPH-dependent 92.2 1.9 4.2E-05 40.5 11.5 29 27-56 2-31 (219)
128 PF01118 Semialdhyde_dh: Semia 92.2 1.3 2.9E-05 37.3 9.4 90 27-148 1-96 (121)
129 PRK07417 arogenate dehydrogena 92.1 0.72 1.6E-05 45.2 8.7 30 27-57 2-31 (279)
130 PRK14619 NAD(P)H-dependent gly 92.1 0.41 9E-06 47.6 7.1 33 25-58 4-36 (308)
131 KOG0069 Glyoxylate/hydroxypyru 92.0 0.54 1.2E-05 47.1 7.5 33 21-54 158-190 (336)
132 PRK07340 ornithine cyclodeamin 91.9 0.66 1.4E-05 46.1 8.2 75 23-127 123-198 (304)
133 PRK08293 3-hydroxybutyryl-CoA 91.9 0.41 8.9E-06 47.1 6.7 32 26-58 4-35 (287)
134 PRK00048 dihydrodipicolinate r 91.8 0.62 1.3E-05 45.1 7.7 91 26-153 2-94 (257)
135 cd05292 LDH_2 A subgroup of L- 91.8 0.52 1.1E-05 47.0 7.3 31 27-57 2-33 (308)
136 COG0039 Mdh Malate/lactate deh 91.7 0.28 6E-06 48.7 5.2 31 26-56 1-32 (313)
137 TIGR00465 ilvC ketol-acid redu 91.7 0.53 1.1E-05 47.0 7.2 33 23-56 1-33 (314)
138 PF10727 Rossmann-like: Rossma 91.7 0.47 1E-05 40.8 5.9 26 24-49 9-34 (127)
139 PRK06197 short chain dehydroge 91.6 0.48 1E-05 46.8 6.9 42 15-57 6-48 (306)
140 PF13460 NAD_binding_10: NADH( 91.6 1.2 2.5E-05 40.1 8.9 96 28-154 1-102 (183)
141 PRK07680 late competence prote 91.5 1.2 2.7E-05 43.3 9.6 31 27-57 2-35 (273)
142 cd01075 NAD_bind_Leu_Phe_Val_D 91.4 0.27 6E-06 45.7 4.5 36 22-58 25-60 (200)
143 PF05237 MoeZ_MoeB: MoeZ/MoeB 91.3 0.19 4E-06 39.9 2.9 24 437-460 23-46 (84)
144 PRK06476 pyrroline-5-carboxyla 91.3 1.1 2.3E-05 43.3 8.8 23 27-49 2-24 (258)
145 PRK00676 hemA glutamyl-tRNA re 91.3 0.26 5.7E-06 49.5 4.6 37 22-58 171-207 (338)
146 TIGR01035 hemA glutamyl-tRNA r 91.2 0.26 5.6E-06 51.3 4.6 36 22-57 177-212 (417)
147 PRK00094 gpsA NAD(P)H-dependen 91.0 1.8 3.9E-05 43.0 10.4 31 27-58 3-33 (325)
148 PRK01710 murD UDP-N-acetylmura 91.0 1.2 2.7E-05 46.8 9.6 37 21-58 10-46 (458)
149 cd01080 NAD_bind_m-THF_DH_Cycl 91.0 0.32 7E-06 43.9 4.5 35 22-57 41-76 (168)
150 COG1086 Predicted nucleoside-d 91.0 1 2.2E-05 47.9 8.6 66 17-101 242-308 (588)
151 COG2084 MmsB 3-hydroxyisobutyr 90.8 0.57 1.2E-05 45.9 6.3 118 26-153 1-124 (286)
152 PF03949 Malic_M: Malic enzyme 90.8 0.37 8.1E-06 46.4 4.9 104 22-149 22-140 (255)
153 PLN02206 UDP-glucuronate decar 90.8 1.7 3.6E-05 45.7 10.2 33 24-57 118-151 (442)
154 PRK14982 acyl-ACP reductase; P 90.7 0.32 7E-06 49.0 4.6 36 22-57 152-189 (340)
155 PRK11908 NAD-dependent epimera 90.7 1.5 3.2E-05 44.1 9.6 32 26-57 2-34 (347)
156 cd01338 MDH_choloroplast_like 90.7 0.34 7.3E-06 48.6 4.7 32 26-57 3-41 (322)
157 PRK12550 shikimate 5-dehydroge 90.7 0.37 8E-06 47.1 4.9 33 25-57 122-154 (272)
158 PF04321 RmlD_sub_bind: RmlD s 90.7 0.34 7.3E-06 47.7 4.7 104 27-155 2-106 (286)
159 cd01493 APPBP1_RUB Ubiquitin a 90.6 0.58 1.2E-05 48.7 6.5 88 373-460 288-403 (425)
160 PTZ00117 malate dehydrogenase; 90.6 0.35 7.5E-06 48.5 4.7 34 24-57 4-37 (319)
161 PRK10669 putative cation:proto 90.6 0.94 2E-05 49.0 8.4 34 25-59 417-450 (558)
162 PTZ00431 pyrroline carboxylate 90.4 0.9 1.9E-05 44.0 7.3 34 24-57 2-38 (260)
163 cd00704 MDH Malate dehydrogena 90.4 0.38 8.2E-06 48.3 4.8 33 26-58 1-40 (323)
164 PRK06928 pyrroline-5-carboxyla 90.3 2 4.4E-05 42.0 9.8 31 27-57 3-36 (277)
165 PRK02006 murD UDP-N-acetylmura 90.3 0.98 2.1E-05 48.1 8.1 35 23-58 5-39 (498)
166 PTZ00325 malate dehydrogenase; 90.3 0.52 1.1E-05 47.2 5.6 35 23-57 6-42 (321)
167 PRK09330 cell division protein 90.2 2.3 4.9E-05 43.7 10.2 37 23-59 11-49 (384)
168 cd05211 NAD_bind_Glu_Leu_Phe_V 90.1 0.4 8.6E-06 45.2 4.5 38 22-59 20-57 (217)
169 PRK13403 ketol-acid reductoiso 90.1 0.38 8.3E-06 47.9 4.5 37 19-56 10-46 (335)
170 PRK02705 murD UDP-N-acetylmura 90.1 1.6 3.5E-05 45.8 9.6 33 26-59 1-33 (459)
171 PRK09987 dTDP-4-dehydrorhamnos 90.1 0.86 1.9E-05 45.0 7.0 107 27-155 2-109 (299)
172 PRK08229 2-dehydropantoate 2-r 90.1 1.3 2.8E-05 44.5 8.5 31 26-57 3-33 (341)
173 PRK09880 L-idonate 5-dehydroge 90.0 2.5 5.5E-05 42.4 10.5 34 24-57 169-202 (343)
174 cd01076 NAD_bind_1_Glu_DH NAD( 90.0 0.95 2.1E-05 43.0 7.0 38 21-58 27-64 (227)
175 cd00762 NAD_bind_malic_enz NAD 89.9 0.28 6E-06 47.2 3.2 40 21-60 21-70 (254)
176 TIGR02853 spore_dpaA dipicolin 89.9 0.4 8.7E-06 47.3 4.5 35 22-57 148-182 (287)
177 PRK08291 ectoine utilization p 89.9 0.98 2.1E-05 45.4 7.4 75 25-127 132-207 (330)
178 PRK12921 2-dehydropantoate 2-r 89.9 1.8 3.8E-05 42.7 9.2 30 27-57 2-31 (305)
179 PRK13304 L-aspartate dehydroge 89.9 1.2 2.5E-05 43.4 7.6 31 27-57 3-35 (265)
180 PRK05854 short chain dehydroge 89.9 1.2 2.6E-05 44.3 8.0 34 22-56 11-45 (313)
181 PRK15469 ghrA bifunctional gly 89.8 0.29 6.3E-06 48.8 3.5 43 14-57 125-167 (312)
182 PRK05442 malate dehydrogenase; 89.8 0.47 1E-05 47.6 4.9 32 26-57 5-43 (326)
183 PLN02928 oxidoreductase family 89.7 0.32 7E-06 49.3 3.7 42 15-57 149-190 (347)
184 PRK00045 hemA glutamyl-tRNA re 89.7 0.42 9.1E-06 49.9 4.6 35 23-57 180-214 (423)
185 PLN00016 RNA-binding protein; 89.6 2.3 4.9E-05 43.5 10.0 116 21-156 48-171 (378)
186 PRK13243 glyoxylate reductase; 89.6 0.38 8.1E-06 48.5 4.1 36 21-57 146-181 (333)
187 PRK15059 tartronate semialdehy 89.6 1.7 3.7E-05 42.9 8.7 114 27-152 2-121 (292)
188 COG0771 MurD UDP-N-acetylmuram 89.6 1.3 2.8E-05 46.2 8.1 38 23-61 5-42 (448)
189 cd01337 MDH_glyoxysomal_mitoch 89.5 0.74 1.6E-05 45.9 6.1 32 27-58 2-35 (310)
190 PRK06436 glycerate dehydrogena 89.5 0.34 7.3E-06 48.2 3.6 43 15-58 112-154 (303)
191 PRK06545 prephenate dehydrogen 89.4 1.5 3.2E-05 44.6 8.4 32 26-58 1-32 (359)
192 PRK13018 cell division protein 89.4 3.5 7.6E-05 42.2 10.9 37 23-59 26-64 (378)
193 cd02201 FtsZ_type1 FtsZ is a G 89.4 3.1 6.7E-05 41.3 10.4 34 27-60 2-37 (304)
194 PLN02166 dTDP-glucose 4,6-dehy 89.3 2.8 6E-05 43.9 10.4 103 25-156 120-240 (436)
195 cd05296 GH4_P_beta_glucosidase 89.3 1 2.2E-05 46.9 7.1 109 27-159 2-117 (419)
196 TIGR00065 ftsZ cell division p 89.2 2.4 5.3E-05 42.9 9.5 40 20-59 12-53 (349)
197 PLN02427 UDP-apiose/xylose syn 89.0 1.9 4.1E-05 44.1 8.9 36 22-57 11-47 (386)
198 COG1023 Gnd Predicted 6-phosph 89.0 1.4 3E-05 41.9 6.9 129 27-165 2-140 (300)
199 cd05312 NAD_bind_1_malic_enz N 88.9 0.56 1.2E-05 45.7 4.6 40 21-60 21-70 (279)
200 TIGR01771 L-LDH-NAD L-lactate 88.6 0.67 1.4E-05 46.0 5.0 27 30-56 1-28 (299)
201 PRK04308 murD UDP-N-acetylmura 88.6 2 4.2E-05 45.1 8.8 35 23-58 3-37 (445)
202 PRK09242 tropinone reductase; 88.6 1.7 3.6E-05 41.5 7.7 34 22-56 6-40 (257)
203 cd00650 LDH_MDH_like NAD-depen 88.4 1.3 2.8E-05 43.0 6.8 30 28-57 1-34 (263)
204 cd05197 GH4_glycoside_hydrolas 88.4 2.2 4.7E-05 44.5 8.8 108 27-159 2-116 (425)
205 PRK01581 speE spermidine synth 88.3 2.5 5.4E-05 43.0 8.8 43 16-59 142-184 (374)
206 PLN02366 spermidine synthase 88.2 3.4 7.5E-05 41.1 9.8 33 25-59 92-125 (308)
207 PRK03803 murD UDP-N-acetylmura 88.2 1.9 4E-05 45.3 8.3 32 25-57 6-37 (448)
208 PRK15461 NADH-dependent gamma- 88.2 0.82 1.8E-05 45.2 5.3 33 26-59 2-34 (296)
209 PTZ00345 glycerol-3-phosphate 88.1 0.7 1.5E-05 47.1 4.8 33 24-56 10-48 (365)
210 PRK04690 murD UDP-N-acetylmura 88.1 2 4.3E-05 45.5 8.4 36 23-59 6-41 (468)
211 PRK07063 short chain dehydroge 88.0 1.6 3.4E-05 41.7 7.2 34 22-56 4-38 (260)
212 TIGR01373 soxB sarcosine oxida 88.0 0.81 1.8E-05 47.1 5.4 44 25-68 30-74 (407)
213 PRK13302 putative L-aspartate 88.0 2.2 4.8E-05 41.6 8.2 34 23-56 4-39 (271)
214 PRK14620 NAD(P)H-dependent gly 88.0 1.6 3.5E-05 43.7 7.4 31 27-58 2-32 (326)
215 PF02719 Polysacc_synt_2: Poly 87.8 0.6 1.3E-05 45.9 4.0 33 28-60 1-34 (293)
216 PRK08217 fabG 3-ketoacyl-(acyl 87.8 1.4 3E-05 41.6 6.5 33 23-56 3-36 (253)
217 PRK08818 prephenate dehydrogen 87.7 1.8 3.9E-05 44.3 7.5 35 23-57 2-37 (370)
218 cd05313 NAD_bind_2_Glu_DH NAD( 87.6 3.2 6.9E-05 40.1 8.7 37 22-58 35-71 (254)
219 PRK06035 3-hydroxyacyl-CoA deh 87.5 0.77 1.7E-05 45.2 4.6 33 26-59 4-36 (291)
220 PLN03209 translocon at the inn 87.4 3.6 7.7E-05 44.4 9.8 33 23-56 78-111 (576)
221 PLN02240 UDP-glucose 4-epimera 87.3 3.2 6.8E-05 41.6 9.2 33 23-56 3-36 (352)
222 PLN02688 pyrroline-5-carboxyla 87.2 3.2 7E-05 40.1 8.8 29 27-55 2-33 (266)
223 PRK07530 3-hydroxybutyryl-CoA 87.2 0.79 1.7E-05 45.1 4.5 33 25-58 4-36 (292)
224 PF02134 UBACT: Repeat in ubiq 87.2 2.8 6.1E-05 31.6 6.5 58 401-460 8-65 (67)
225 PRK11559 garR tartronate semia 87.2 0.91 2E-05 44.7 5.0 32 26-58 3-34 (296)
226 PF02737 3HCDH_N: 3-hydroxyacy 87.1 0.77 1.7E-05 41.9 4.1 32 27-59 1-32 (180)
227 COG1063 Tdh Threonine dehydrog 87.1 3.8 8.2E-05 41.5 9.5 94 26-144 170-265 (350)
228 TIGR01505 tartro_sem_red 2-hyd 87.1 0.94 2E-05 44.5 5.0 32 27-59 1-32 (291)
229 PRK02472 murD UDP-N-acetylmura 87.1 2.5 5.4E-05 44.2 8.5 35 23-58 3-37 (447)
230 PRK08306 dipicolinate synthase 87.0 0.84 1.8E-05 45.2 4.6 35 23-58 150-184 (296)
231 PRK12439 NAD(P)H-dependent gly 86.9 0.93 2E-05 45.8 4.9 29 26-56 8-36 (341)
232 COG0240 GpsA Glycerol-3-phosph 86.8 0.95 2.1E-05 45.1 4.8 31 26-57 2-32 (329)
233 PRK07819 3-hydroxybutyryl-CoA 86.8 0.89 1.9E-05 44.8 4.6 33 26-59 6-38 (286)
234 COG1091 RfbD dTDP-4-dehydrorha 86.7 4.7 0.0001 39.5 9.4 98 27-150 2-100 (281)
235 TIGR01692 HIBADH 3-hydroxyisob 86.7 0.68 1.5E-05 45.6 3.7 112 30-152 1-118 (288)
236 PRK05479 ketol-acid reductoiso 86.6 0.87 1.9E-05 45.7 4.4 36 20-56 12-47 (330)
237 PLN02520 bifunctional 3-dehydr 86.5 0.81 1.8E-05 49.1 4.5 34 23-57 377-410 (529)
238 PRK08410 2-hydroxyacid dehydro 86.5 0.71 1.5E-05 46.1 3.8 36 21-57 141-176 (311)
239 PRK12480 D-lactate dehydrogena 86.5 0.93 2E-05 45.6 4.6 37 21-58 142-178 (330)
240 PRK11259 solA N-methyltryptoph 86.4 0.83 1.8E-05 46.3 4.4 35 25-60 3-37 (376)
241 PF01408 GFO_IDH_MocA: Oxidore 86.3 4.1 8.9E-05 33.8 7.9 87 27-146 2-90 (120)
242 PRK05808 3-hydroxybutyryl-CoA 86.2 0.95 2.1E-05 44.3 4.5 32 26-58 4-35 (282)
243 KOG0024 Sorbitol dehydrogenase 86.2 2.5 5.5E-05 41.9 7.2 32 25-56 170-201 (354)
244 cd08230 glucose_DH Glucose deh 86.1 3.3 7.2E-05 41.7 8.5 33 24-57 172-204 (355)
245 TIGR01202 bchC 2-desacetyl-2-h 86.0 3.8 8.3E-05 40.5 8.8 34 24-57 144-177 (308)
246 TIGR01757 Malate-DH_plant mala 86.0 1.9 4.1E-05 44.3 6.6 75 26-125 45-128 (387)
247 PRK07062 short chain dehydroge 86.0 3.3 7.1E-05 39.6 8.1 34 23-57 6-40 (265)
248 COG0665 DadA Glycine/D-amino a 85.9 1.1 2.4E-05 45.5 5.0 41 24-65 3-43 (387)
249 PRK09260 3-hydroxybutyryl-CoA 85.9 1 2.2E-05 44.3 4.5 33 26-59 2-34 (288)
250 TIGR00417 speE spermidine synt 85.8 6.8 0.00015 38.1 10.3 32 25-58 73-105 (270)
251 PRK13301 putative L-aspartate 85.8 2.7 5.9E-05 40.7 7.2 108 26-145 3-117 (267)
252 PRK12826 3-ketoacyl-(acyl-carr 85.8 1.1 2.4E-05 42.2 4.7 35 22-57 3-38 (251)
253 PF01266 DAO: FAD dependent ox 85.8 1.1 2.4E-05 44.4 4.9 33 27-60 1-33 (358)
254 COG1712 Predicted dinucleotide 85.8 1 2.2E-05 42.3 4.1 105 27-143 2-113 (255)
255 PF01564 Spermine_synth: Sperm 85.8 1.2 2.6E-05 42.9 4.8 91 6-123 60-156 (246)
256 TIGR03376 glycerol3P_DH glycer 85.7 3.7 8.1E-05 41.5 8.5 31 27-57 1-38 (342)
257 PRK06487 glycerate dehydrogena 85.7 0.84 1.8E-05 45.7 3.8 36 21-57 144-179 (317)
258 cd05298 GH4_GlvA_pagL_like Gly 85.6 3.9 8.5E-05 42.8 8.9 106 27-158 2-115 (437)
259 COG0362 Gnd 6-phosphogluconate 85.5 2.6 5.7E-05 42.8 7.1 126 24-152 2-130 (473)
260 PRK05476 S-adenosyl-L-homocyst 85.5 1 2.2E-05 46.8 4.5 36 23-59 210-245 (425)
261 PLN02545 3-hydroxybutyryl-CoA 85.5 1.1 2.5E-05 44.1 4.6 32 26-58 5-36 (295)
262 PRK06932 glycerate dehydrogena 85.5 0.83 1.8E-05 45.6 3.7 35 21-56 143-177 (314)
263 PRK08125 bifunctional UDP-gluc 85.5 3.8 8.3E-05 45.3 9.3 39 19-57 309-348 (660)
264 PLN00141 Tic62-NAD(P)-related 85.4 4.6 9.9E-05 38.5 8.7 34 21-55 13-47 (251)
265 COG0421 SpeE Spermidine syntha 85.4 4.5 9.8E-05 39.7 8.7 75 26-127 78-160 (282)
266 PRK06223 malate dehydrogenase; 85.2 1.2 2.6E-05 44.2 4.7 32 26-57 3-34 (307)
267 PRK12367 short chain dehydroge 85.2 1.5 3.3E-05 42.0 5.3 39 19-58 8-47 (245)
268 PRK08655 prephenate dehydrogen 85.2 2.3 5.1E-05 44.5 7.0 31 27-58 2-33 (437)
269 PTZ00075 Adenosylhomocysteinas 85.1 1.2 2.7E-05 46.7 4.8 37 22-59 251-287 (476)
270 cd00401 AdoHcyase S-adenosyl-L 85.0 1.2 2.5E-05 46.2 4.6 35 23-58 200-234 (413)
271 PRK06046 alanine dehydrogenase 84.9 4.1 8.8E-05 40.9 8.4 74 25-127 129-203 (326)
272 PF13738 Pyr_redox_3: Pyridine 84.9 0.89 1.9E-05 41.6 3.4 35 21-56 163-197 (203)
273 TIGR00518 alaDH alanine dehydr 84.8 1.2 2.6E-05 45.6 4.6 35 23-58 165-199 (370)
274 PRK07831 short chain dehydroge 84.7 3.3 7.2E-05 39.6 7.5 34 22-56 14-49 (262)
275 PRK12409 D-amino acid dehydrog 84.7 1.2 2.6E-05 45.9 4.7 33 26-59 2-34 (410)
276 COG1064 AdhP Zn-dependent alco 84.7 6.6 0.00014 39.5 9.6 89 25-144 167-255 (339)
277 PRK00257 erythronate-4-phospha 84.7 1.2 2.5E-05 45.8 4.4 35 22-57 113-147 (381)
278 TIGR00036 dapB dihydrodipicoli 84.7 1.9 4.2E-05 41.9 5.8 31 26-56 2-34 (266)
279 PLN02657 3,8-divinyl protochlo 84.7 7 0.00015 40.2 10.2 33 24-57 59-92 (390)
280 KOG1205 Predicted dehydrogenas 84.6 3.2 6.8E-05 40.7 7.1 40 16-55 3-43 (282)
281 PRK11150 rfaD ADP-L-glycero-D- 84.6 5.2 0.00011 39.2 9.0 31 28-58 2-33 (308)
282 PLN00112 malate dehydrogenase 84.5 2.8 6E-05 43.8 7.1 74 26-126 101-185 (444)
283 PRK15438 erythronate-4-phospha 84.5 1.2 2.6E-05 45.6 4.4 35 22-57 113-147 (378)
284 PF12847 Methyltransf_18: Meth 84.5 8.5 0.00018 31.3 8.9 77 25-125 2-78 (112)
285 PRK07478 short chain dehydroge 84.4 2.8 6E-05 39.9 6.7 33 23-56 4-37 (254)
286 PRK06129 3-hydroxyacyl-CoA deh 84.3 1.3 2.8E-05 44.1 4.5 33 26-59 3-35 (308)
287 PRK08374 homoserine dehydrogen 84.3 5.9 0.00013 40.0 9.2 21 26-46 3-23 (336)
288 KOG0409 Predicted dehydrogenas 84.3 2.6 5.6E-05 41.4 6.2 118 25-153 35-159 (327)
289 COG0281 SfcA Malic enzyme [Ene 84.3 1 2.2E-05 46.1 3.7 40 21-60 195-236 (432)
290 PRK15076 alpha-galactosidase; 84.1 4.4 9.5E-05 42.4 8.4 110 26-159 2-120 (431)
291 TIGR01377 soxA_mon sarcosine o 84.0 1.4 3E-05 44.8 4.6 33 27-60 2-34 (380)
292 PRK03806 murD UDP-N-acetylmura 84.0 4.8 0.0001 42.0 8.8 35 23-58 4-38 (438)
293 PRK07574 formate dehydrogenase 83.9 1.2 2.6E-05 45.8 4.1 36 21-57 188-223 (385)
294 PRK06199 ornithine cyclodeamin 83.9 3.8 8.2E-05 42.1 7.7 81 20-127 147-233 (379)
295 PRK06139 short chain dehydroge 83.8 2.1 4.6E-05 43.0 5.8 35 22-57 4-39 (330)
296 PRK06270 homoserine dehydrogen 83.8 6.7 0.00014 39.6 9.4 22 26-47 3-24 (341)
297 PRK05867 short chain dehydroge 83.8 2.7 5.8E-05 40.0 6.3 33 23-56 7-40 (253)
298 TIGR01763 MalateDH_bact malate 83.7 1.5 3.2E-05 43.6 4.6 32 26-57 2-33 (305)
299 TIGR00715 precor6x_red precorr 83.7 9.9 0.00021 36.8 10.1 91 27-148 2-98 (256)
300 PF10087 DUF2325: Uncharacteri 83.6 4 8.7E-05 33.0 6.4 72 79-153 10-86 (97)
301 PRK05335 tRNA (uracil-5-)-meth 83.6 1.4 3.1E-05 45.8 4.5 32 25-57 2-33 (436)
302 PRK06184 hypothetical protein; 83.5 1.2 2.7E-05 47.3 4.2 34 24-58 2-35 (502)
303 PTZ00079 NADP-specific glutama 83.4 6.2 0.00013 41.3 9.0 37 22-58 234-270 (454)
304 PRK11873 arsM arsenite S-adeno 83.3 9.6 0.00021 36.9 10.1 33 24-57 77-110 (272)
305 PRK09310 aroDE bifunctional 3- 83.2 1.5 3.2E-05 46.5 4.6 33 23-56 330-362 (477)
306 PRK06249 2-dehydropantoate 2-r 83.2 1.5 3.2E-05 43.7 4.4 34 25-59 5-38 (313)
307 COG1087 GalE UDP-glucose 4-epi 83.2 10 0.00023 37.4 9.9 144 27-193 2-151 (329)
308 COG1062 AdhC Zn-dependent alco 83.1 10 0.00022 38.0 9.9 92 25-144 186-281 (366)
309 COG2227 UbiG 2-polyprenyl-3-me 83.1 5.7 0.00012 37.8 7.9 31 23-56 58-88 (243)
310 TIGR01214 rmlD dTDP-4-dehydror 83.0 4.3 9.4E-05 39.3 7.6 30 27-57 1-31 (287)
311 TIGR02371 ala_DH_arch alanine 82.9 5.9 0.00013 39.7 8.6 74 25-127 128-202 (325)
312 PRK07066 3-hydroxybutyryl-CoA 82.9 1.6 3.5E-05 43.7 4.5 33 26-59 8-40 (321)
313 COG0111 SerA Phosphoglycerate 82.9 1.4 3E-05 44.2 4.0 50 7-57 120-173 (324)
314 PRK05225 ketol-acid reductoiso 82.8 0.61 1.3E-05 48.5 1.4 42 11-52 18-63 (487)
315 PF01494 FAD_binding_3: FAD bi 82.8 1.5 3.3E-05 43.4 4.3 34 26-60 2-35 (356)
316 PRK09126 hypothetical protein; 82.7 1.5 3.2E-05 44.8 4.3 36 24-60 2-37 (392)
317 PRK05866 short chain dehydroge 82.6 3.9 8.5E-05 40.1 7.1 34 22-56 37-71 (293)
318 PRK08589 short chain dehydroge 82.6 2.9 6.4E-05 40.3 6.1 34 22-56 3-37 (272)
319 PLN02494 adenosylhomocysteinas 82.5 1.7 3.7E-05 45.6 4.6 36 23-59 252-287 (477)
320 COG0345 ProC Pyrroline-5-carbo 82.5 6.2 0.00013 38.4 8.1 77 26-136 2-81 (266)
321 PRK12939 short chain dehydroge 82.5 3.7 8.1E-05 38.6 6.7 33 23-56 5-38 (250)
322 PRK00421 murC UDP-N-acetylmura 82.4 3.9 8.5E-05 43.0 7.4 34 24-58 6-40 (461)
323 PLN02572 UDP-sulfoquinovose sy 82.4 3.6 7.7E-05 43.2 7.1 35 22-57 44-79 (442)
324 PLN02172 flavin-containing mon 82.4 1.3 2.9E-05 46.6 3.8 37 21-58 6-42 (461)
325 PRK14031 glutamate dehydrogena 82.3 5.9 0.00013 41.4 8.4 37 22-58 225-261 (444)
326 PRK09754 phenylpropionate diox 82.2 1.6 3.5E-05 44.9 4.3 37 23-59 1-38 (396)
327 PRK08264 short chain dehydroge 82.2 1.9 4.1E-05 40.5 4.5 35 23-57 4-39 (238)
328 PRK00141 murD UDP-N-acetylmura 82.2 1.7 3.6E-05 46.0 4.5 40 18-58 8-47 (473)
329 PRK00436 argC N-acetyl-gamma-g 82.1 6.4 0.00014 39.8 8.5 95 26-149 3-99 (343)
330 PF10100 DUF2338: Uncharacteri 82.0 11 0.00024 38.6 9.9 31 26-56 2-32 (429)
331 TIGR03364 HpnW_proposed FAD de 82.0 2.4 5.2E-05 42.9 5.5 34 27-61 2-35 (365)
332 PRK07494 2-octaprenyl-6-methox 82.0 1.6 3.5E-05 44.5 4.2 34 25-59 7-40 (388)
333 PRK08300 acetaldehyde dehydrog 82.0 14 0.0003 36.6 10.5 98 24-149 3-101 (302)
334 PRK14192 bifunctional 5,10-met 81.9 1.9 4E-05 42.5 4.4 35 22-57 156-191 (283)
335 PRK11790 D-3-phosphoglycerate 81.9 1.5 3.3E-05 45.4 4.0 36 21-57 147-182 (409)
336 cd01339 LDH-like_MDH L-lactate 81.8 1.7 3.7E-05 43.0 4.2 31 28-58 1-31 (300)
337 cd01492 Aos1_SUMO Ubiquitin ac 81.8 1 2.2E-05 41.8 2.4 21 440-460 155-175 (197)
338 PF13738 Pyr_redox_3: Pyridine 81.8 1.8 3.9E-05 39.5 4.1 30 29-58 1-30 (203)
339 PF02558 ApbA: Ketopantoate re 81.7 2.1 4.5E-05 37.4 4.3 28 28-56 1-28 (151)
340 cd02191 FtsZ FtsZ is a GTPase 81.6 13 0.00029 36.8 10.4 36 27-62 2-39 (303)
341 PRK08251 short chain dehydroge 81.6 6.2 0.00014 37.2 7.9 32 25-57 2-34 (248)
342 PRK07236 hypothetical protein; 81.6 1.8 3.9E-05 44.3 4.4 36 23-59 4-39 (386)
343 PRK01747 mnmC bifunctional tRN 81.5 1.8 3.8E-05 47.9 4.6 33 26-59 261-293 (662)
344 PLN02968 Probable N-acetyl-gam 81.2 6 0.00013 40.6 8.0 97 24-149 37-134 (381)
345 PRK06185 hypothetical protein; 81.2 2 4.3E-05 44.2 4.6 35 24-59 5-39 (407)
346 TIGR02469 CbiT precorrin-6Y C5 81.1 20 0.00043 29.4 10.0 31 25-56 20-50 (124)
347 PRK07231 fabG 3-ketoacyl-(acyl 81.0 1.9 4.1E-05 40.7 4.0 34 23-57 3-37 (251)
348 PRK00536 speE spermidine synth 81.0 7 0.00015 38.0 7.9 30 25-59 73-104 (262)
349 PRK07608 ubiquinone biosynthes 80.9 2.1 4.5E-05 43.6 4.6 35 25-60 5-39 (388)
350 PRK15181 Vi polysaccharide bio 80.9 5.4 0.00012 40.1 7.6 36 22-58 12-48 (348)
351 PTZ00317 NADP-dependent malic 80.8 1.3 2.8E-05 47.2 3.1 39 21-59 293-341 (559)
352 COG0287 TyrA Prephenate dehydr 80.8 2.5 5.4E-05 41.5 4.8 27 25-51 3-29 (279)
353 PRK13529 malate dehydrogenase; 80.8 1.2 2.6E-05 47.5 2.8 40 21-60 291-340 (563)
354 TIGR01087 murD UDP-N-acetylmur 80.8 6.9 0.00015 40.7 8.5 31 27-58 1-31 (433)
355 PRK00377 cbiT cobalt-precorrin 80.7 13 0.00029 34.1 9.5 79 24-125 40-119 (198)
356 PRK14618 NAD(P)H-dependent gly 80.7 2.2 4.7E-05 42.8 4.5 32 26-58 5-36 (328)
357 PRK08773 2-octaprenyl-3-methyl 80.7 1.9 4E-05 44.2 4.2 34 25-59 6-39 (392)
358 PLN02256 arogenate dehydrogena 80.7 2.1 4.6E-05 42.5 4.4 36 21-57 32-67 (304)
359 cd08239 THR_DH_like L-threonin 80.7 12 0.00025 37.3 9.9 33 25-57 164-196 (339)
360 PRK11036 putative S-adenosyl-L 80.7 23 0.00049 34.0 11.5 76 25-125 45-120 (255)
361 TIGR02028 ChlP geranylgeranyl 80.6 1.9 4.2E-05 44.4 4.3 31 27-58 2-32 (398)
362 PF13450 NAD_binding_8: NAD(P) 80.6 2.9 6.2E-05 31.5 4.1 28 30-58 1-28 (68)
363 KOG0685 Flavin-containing amin 80.5 2.3 5E-05 44.3 4.6 40 18-57 14-53 (498)
364 COG1486 CelF Alpha-galactosida 80.5 3 6.5E-05 43.2 5.5 108 24-156 2-116 (442)
365 PRK13581 D-3-phosphoglycerate 80.5 1.8 3.9E-05 46.5 4.1 36 21-57 136-171 (526)
366 TIGR01850 argC N-acetyl-gamma- 80.5 9 0.00019 38.8 8.9 96 27-149 2-99 (346)
367 PRK05714 2-octaprenyl-3-methyl 80.3 1.9 4.2E-05 44.3 4.2 33 26-59 3-35 (405)
368 PRK14030 glutamate dehydrogena 80.3 12 0.00026 39.1 9.9 37 22-58 225-261 (445)
369 TIGR00936 ahcY adenosylhomocys 80.3 2.2 4.8E-05 44.1 4.4 36 23-59 193-228 (406)
370 PRK07531 bifunctional 3-hydrox 80.2 2.2 4.8E-05 45.5 4.6 32 26-58 5-36 (495)
371 PRK08849 2-octaprenyl-3-methyl 80.0 2 4.4E-05 43.9 4.1 34 25-59 3-36 (384)
372 PRK09414 glutamate dehydrogena 80.0 10 0.00022 39.7 9.3 36 22-57 229-264 (445)
373 PRK08013 oxidoreductase; Provi 79.9 2.2 4.8E-05 43.9 4.4 35 24-59 2-36 (400)
374 PRK06523 short chain dehydroge 79.9 6.1 0.00013 37.6 7.2 37 22-59 6-43 (260)
375 PF02629 CoA_binding: CoA bind 79.9 13 0.00029 29.9 8.1 92 24-150 2-94 (96)
376 PRK05678 succinyl-CoA syntheta 79.9 5.6 0.00012 39.2 7.0 116 24-155 7-129 (291)
377 PRK08850 2-octaprenyl-6-methox 79.8 1.9 4E-05 44.5 3.8 33 25-58 4-36 (405)
378 PRK00711 D-amino acid dehydrog 79.8 2.3 5.1E-05 43.7 4.6 32 27-59 2-33 (416)
379 PLN03139 formate dehydrogenase 79.7 2.1 4.6E-05 44.0 4.1 36 21-57 195-230 (386)
380 TIGR02032 GG-red-SF geranylger 79.7 2.5 5.4E-05 40.8 4.5 33 27-60 2-34 (295)
381 PRK13303 L-aspartate dehydroge 79.7 4.9 0.00011 39.1 6.5 22 26-47 2-23 (265)
382 PF05368 NmrA: NmrA-like famil 79.7 16 0.00036 34.1 10.0 94 28-149 1-101 (233)
383 PTZ00318 NADH dehydrogenase-li 79.3 3.4 7.3E-05 43.0 5.6 37 22-59 7-43 (424)
384 TIGR01772 MDH_euk_gproteo mala 79.2 2.5 5.4E-05 42.2 4.3 33 27-59 1-35 (312)
385 TIGR01292 TRX_reduct thioredox 79.1 2.7 5.8E-05 40.8 4.5 32 27-59 2-33 (300)
386 PRK06194 hypothetical protein; 79.1 2 4.4E-05 41.7 3.6 34 23-57 4-38 (287)
387 PRK08507 prephenate dehydrogen 79.1 2.7 6E-05 40.9 4.6 31 27-57 2-33 (275)
388 PRK06841 short chain dehydroge 79.0 2.8 6.1E-05 39.8 4.6 34 23-57 13-47 (255)
389 TIGR00137 gid_trmFO tRNA:m(5)U 79.0 2.5 5.5E-05 44.0 4.5 31 26-57 1-31 (433)
390 PRK06398 aldose dehydrogenase; 79.0 6.1 0.00013 37.8 6.9 36 22-58 3-39 (258)
391 PRK07791 short chain dehydroge 79.0 4.8 0.0001 39.3 6.3 34 22-56 3-37 (286)
392 PRK12779 putative bifunctional 78.9 9.6 0.00021 44.0 9.5 34 24-58 305-338 (944)
393 PRK11101 glpA sn-glycerol-3-ph 78.9 3.2 7E-05 44.8 5.4 35 25-60 6-40 (546)
394 PF00743 FMO-like: Flavin-bind 78.8 2.3 5E-05 45.7 4.3 31 25-56 1-31 (531)
395 PLN00106 malate dehydrogenase 78.8 2.8 6.1E-05 42.0 4.6 36 24-59 17-54 (323)
396 cd08281 liver_ADH_like1 Zinc-d 78.8 12 0.00026 37.9 9.4 32 25-56 192-223 (371)
397 PRK07792 fabG 3-ketoacyl-(acyl 78.7 5.8 0.00013 39.2 6.9 36 21-57 8-44 (306)
398 TIGR01327 PGDH D-3-phosphoglyc 78.7 2.1 4.6E-05 45.9 4.0 36 21-57 134-169 (525)
399 TIGR03329 Phn_aa_oxid putative 78.5 3.2 7E-05 43.6 5.2 44 25-68 24-68 (460)
400 PRK10309 galactitol-1-phosphat 78.4 16 0.00036 36.4 10.2 32 25-56 161-192 (347)
401 CHL00194 ycf39 Ycf39; Provisio 78.4 11 0.00023 37.4 8.7 29 27-56 2-31 (317)
402 PF00106 adh_short: short chai 78.4 2.9 6.2E-05 36.7 4.1 33 26-58 1-34 (167)
403 TIGR01988 Ubi-OHases Ubiquinon 78.3 2.6 5.7E-05 42.7 4.4 33 27-60 1-33 (385)
404 PRK07576 short chain dehydroge 78.3 2.2 4.8E-05 41.0 3.6 37 20-57 4-41 (264)
405 PRK12862 malic enzyme; Reviewe 78.2 2 4.3E-05 48.1 3.6 40 21-60 189-230 (763)
406 PRK08163 salicylate hydroxylas 78.1 2.7 5.9E-05 42.9 4.4 34 25-59 4-37 (396)
407 TIGR01832 kduD 2-deoxy-D-gluco 78.1 3 6.5E-05 39.4 4.4 33 23-56 3-36 (248)
408 PLN02858 fructose-bisphosphate 77.8 2.9 6.3E-05 50.0 5.0 128 25-163 4-144 (1378)
409 PRK06834 hypothetical protein; 77.8 2.7 5.9E-05 44.6 4.4 35 24-59 2-36 (488)
410 PF00670 AdoHcyase_NAD: S-aden 77.7 3.2 6.9E-05 37.2 4.1 39 21-60 19-57 (162)
411 PRK08265 short chain dehydroge 77.7 2.3 5.1E-05 40.7 3.6 35 22-57 3-38 (261)
412 PRK07666 fabG 3-ketoacyl-(acyl 77.6 2.7 5.8E-05 39.5 3.9 35 22-57 4-39 (239)
413 PRK05732 2-octaprenyl-6-methox 77.5 2.6 5.6E-05 43.0 4.1 34 24-58 2-38 (395)
414 PRK11728 hydroxyglutarate oxid 77.4 3.3 7E-05 42.5 4.8 33 26-59 3-37 (393)
415 PRK06198 short chain dehydroge 77.4 2.3 5E-05 40.5 3.4 36 22-57 3-39 (260)
416 PRK08605 D-lactate dehydrogena 77.4 2.8 6E-05 42.2 4.1 36 21-57 142-178 (332)
417 COG0300 DltE Short-chain dehyd 77.4 20 0.00043 34.9 9.8 58 23-101 4-62 (265)
418 PRK07364 2-octaprenyl-6-methox 77.4 3 6.6E-05 42.9 4.6 35 25-60 18-52 (415)
419 PRK07109 short chain dehydroge 77.3 6.8 0.00015 39.3 7.0 35 22-57 5-40 (334)
420 PRK04207 glyceraldehyde-3-phos 77.2 12 0.00026 37.8 8.7 36 114-150 75-110 (341)
421 TIGR01790 carotene-cycl lycope 77.1 2.9 6.4E-05 42.6 4.3 31 27-58 1-31 (388)
422 TIGR01984 UbiH 2-polyprenyl-6- 77.1 2.8 6E-05 42.6 4.1 33 27-60 1-34 (382)
423 PRK06753 hypothetical protein; 77.1 3.3 7.1E-05 42.0 4.6 32 27-59 2-33 (373)
424 COG1250 FadB 3-hydroxyacyl-CoA 77.1 4.7 0.0001 40.0 5.5 33 25-58 3-35 (307)
425 PRK11579 putative oxidoreducta 77.1 23 0.00051 35.6 10.8 33 26-58 5-39 (346)
426 PF13454 NAD_binding_9: FAD-NA 77.0 3.1 6.8E-05 36.8 3.9 32 29-60 1-36 (156)
427 PRK08244 hypothetical protein; 76.9 3 6.5E-05 44.2 4.5 32 26-58 3-34 (493)
428 PRK07589 ornithine cyclodeamin 76.8 12 0.00026 37.9 8.5 79 20-127 121-203 (346)
429 KOG0022 Alcohol dehydrogenase, 76.8 9.8 0.00021 37.7 7.4 32 25-56 193-224 (375)
430 PLN02780 ketoreductase/ oxidor 76.7 8.8 0.00019 38.3 7.5 32 24-56 52-84 (320)
431 PRK06057 short chain dehydroge 76.6 3.2 6.8E-05 39.5 4.1 34 22-56 4-38 (255)
432 PRK11064 wecC UDP-N-acetyl-D-m 76.6 3.1 6.7E-05 43.3 4.3 34 25-59 3-36 (415)
433 PRK06617 2-octaprenyl-6-methox 76.5 3 6.5E-05 42.5 4.2 33 26-59 2-34 (374)
434 PRK05472 redox-sensing transcr 76.5 17 0.00036 34.0 8.9 34 25-58 84-119 (213)
435 PRK06847 hypothetical protein; 76.5 3.4 7.5E-05 41.8 4.6 34 25-59 4-37 (375)
436 PRK14806 bifunctional cyclohex 76.4 10 0.00022 42.4 8.7 33 26-58 4-37 (735)
437 TIGR00138 gidB 16S rRNA methyl 76.3 27 0.00058 31.8 10.0 92 6-125 25-117 (181)
438 TIGR01758 MDH_euk_cyt malate d 76.3 3.1 6.6E-05 41.8 4.1 31 27-57 1-38 (324)
439 PRK07232 bifunctional malic en 76.2 2.7 6E-05 46.8 4.0 40 21-60 181-222 (752)
440 PRK12861 malic enzyme; Reviewe 76.2 2.4 5.2E-05 47.3 3.5 40 21-60 185-226 (764)
441 PRK07856 short chain dehydroge 76.2 9.3 0.0002 36.2 7.3 36 23-59 4-40 (252)
442 TIGR02279 PaaC-3OHAcCoADH 3-hy 76.1 3.3 7.2E-05 44.2 4.5 33 25-58 5-37 (503)
443 PF02423 OCD_Mu_crystall: Orni 76.0 10 0.00022 37.8 7.8 74 25-127 128-202 (313)
444 PRK08213 gluconate 5-dehydroge 76.0 3.6 7.8E-05 39.2 4.4 34 22-56 9-43 (259)
445 TIGR02023 BchP-ChlP geranylger 76.0 3.5 7.6E-05 42.2 4.5 31 27-58 2-32 (388)
446 PLN02823 spermine synthase 76.0 13 0.00029 37.5 8.5 34 24-59 103-137 (336)
447 PRK05868 hypothetical protein; 76.0 3.6 7.9E-05 41.9 4.6 33 26-59 2-34 (372)
448 COG2072 TrkA Predicted flavopr 76.0 2.9 6.2E-05 43.9 3.9 32 23-55 173-204 (443)
449 PRK08063 enoyl-(acyl carrier p 75.8 5.9 0.00013 37.3 5.8 28 23-50 2-30 (250)
450 TIGR02717 AcCoA-syn-alpha acet 75.7 11 0.00024 39.6 8.2 38 22-59 4-46 (447)
451 PRK14967 putative methyltransf 75.7 16 0.00034 34.3 8.6 32 25-58 37-68 (223)
452 PRK15409 bifunctional glyoxyla 75.7 2.7 5.9E-05 42.1 3.5 34 22-56 142-176 (323)
453 PRK07060 short chain dehydroge 75.6 4 8.8E-05 38.3 4.5 34 23-57 7-41 (245)
454 PRK12770 putative glutamate sy 75.6 3.8 8.3E-05 41.4 4.6 34 25-58 172-205 (352)
455 PRK07045 putative monooxygenas 75.4 3.7 7.9E-05 42.0 4.5 33 26-59 6-38 (388)
456 PRK08020 ubiF 2-octaprenyl-3-m 75.4 3.3 7.2E-05 42.2 4.2 33 26-59 6-38 (391)
457 PRK08945 putative oxoacyl-(acy 75.4 4 8.7E-05 38.5 4.5 36 21-57 8-44 (247)
458 PRK08268 3-hydroxy-acyl-CoA de 75.4 3.5 7.7E-05 44.0 4.5 32 26-58 8-39 (507)
459 PF07991 IlvN: Acetohydroxy ac 75.4 4 8.7E-05 36.5 4.1 32 23-55 2-33 (165)
460 PRK07523 gluconate 5-dehydroge 75.3 4.1 8.8E-05 38.7 4.5 34 23-57 8-42 (255)
461 TIGR00853 pts-lac PTS system, 75.3 16 0.00035 29.5 7.3 58 86-149 25-82 (95)
462 PLN02740 Alcohol dehydrogenase 75.2 19 0.0004 36.7 9.6 33 25-57 199-231 (381)
463 PLN03129 NADP-dependent malic 75.2 3.7 8.1E-05 44.0 4.5 39 21-59 317-366 (581)
464 TIGR03589 PseB UDP-N-acetylglu 75.2 4.1 8.8E-05 40.7 4.7 36 23-58 2-39 (324)
465 PRK04176 ribulose-1,5-biphosph 75.1 5.9 0.00013 38.3 5.6 36 22-58 22-57 (257)
466 PRK06392 homoserine dehydrogen 74.9 17 0.00038 36.4 9.0 20 27-46 2-21 (326)
467 PRK12859 3-ketoacyl-(acyl-carr 74.8 2.9 6.2E-05 40.0 3.3 35 21-56 2-39 (256)
468 PRK07190 hypothetical protein; 74.8 3.9 8.5E-05 43.4 4.6 33 26-59 6-38 (487)
469 PLN02306 hydroxypyruvate reduc 74.8 3.5 7.6E-05 42.4 4.1 36 21-57 161-197 (386)
470 PRK00517 prmA ribosomal protei 74.8 33 0.00071 32.9 10.7 34 24-59 119-152 (250)
471 PRK07333 2-octaprenyl-6-methox 74.7 3.4 7.3E-05 42.3 4.0 34 26-59 2-36 (403)
472 PRK08057 cobalt-precorrin-6x r 74.6 34 0.00073 33.0 10.5 93 25-147 2-97 (248)
473 PRK07588 hypothetical protein; 74.6 4.1 8.9E-05 41.6 4.6 31 27-58 2-32 (391)
474 smart00859 Semialdhyde_dh Semi 74.4 24 0.00053 29.4 8.6 28 27-54 1-30 (122)
475 PRK12828 short chain dehydroge 74.3 3.8 8.3E-05 38.1 4.0 35 22-57 4-39 (239)
476 PLN02463 lycopene beta cyclase 74.2 3.3 7.2E-05 43.5 3.9 47 9-59 15-61 (447)
477 PRK07067 sorbitol dehydrogenas 74.2 4.4 9.5E-05 38.6 4.4 33 23-56 4-37 (257)
478 PRK12769 putative oxidoreducta 74.2 3.8 8.3E-05 45.2 4.5 34 24-58 326-359 (654)
479 PRK06567 putative bifunctional 74.2 4.3 9.2E-05 46.5 4.8 38 23-61 381-418 (1028)
480 TIGR03466 HpnA hopanoid-associ 74.2 13 0.00028 36.5 8.0 31 27-58 2-33 (328)
481 PRK12829 short chain dehydroge 74.2 4.5 9.7E-05 38.5 4.5 36 20-56 6-42 (264)
482 PRK08703 short chain dehydroge 74.1 3.3 7.1E-05 38.9 3.5 33 23-56 4-37 (239)
483 PLN02464 glycerol-3-phosphate 74.1 3.8 8.1E-05 45.1 4.4 35 26-61 72-106 (627)
484 PLN00093 geranylgeranyl diphos 74.1 3.8 8.3E-05 43.1 4.3 32 26-58 40-71 (450)
485 PLN02383 aspartate semialdehyd 74.0 19 0.0004 36.5 9.0 30 25-54 7-37 (344)
486 PRK08132 FAD-dependent oxidore 74.0 4.1 8.9E-05 43.9 4.6 35 24-59 22-56 (547)
487 PRK06949 short chain dehydroge 73.9 4.7 0.0001 38.2 4.6 33 23-56 7-40 (258)
488 TIGR03026 NDP-sugDHase nucleot 73.9 4.1 8.9E-05 42.2 4.4 39 27-66 2-40 (411)
489 PRK12823 benD 1,6-dihydroxycyc 73.8 4.5 9.7E-05 38.5 4.4 34 22-56 5-39 (260)
490 cd01336 MDH_cytoplasmic_cytoso 73.8 4.2 9.1E-05 40.8 4.3 32 26-57 3-41 (325)
491 PRK07774 short chain dehydroge 73.8 3.7 8E-05 38.7 3.8 34 22-56 3-37 (250)
492 PF05834 Lycopene_cycl: Lycope 73.8 8.4 0.00018 39.3 6.6 33 28-61 2-36 (374)
493 PRK06475 salicylate hydroxylas 73.7 4.3 9.4E-05 41.7 4.5 34 25-59 2-35 (400)
494 PRK12771 putative glutamate sy 73.7 4 8.6E-05 44.2 4.4 35 24-59 136-170 (564)
495 PRK08664 aspartate-semialdehyd 73.7 16 0.00034 37.0 8.5 31 25-55 3-34 (349)
496 PRK06823 ornithine cyclodeamin 73.7 17 0.00036 36.3 8.5 74 25-127 128-202 (315)
497 PRK12266 glpD glycerol-3-phosp 73.7 5.2 0.00011 42.7 5.3 36 25-61 6-41 (508)
498 PRK12748 3-ketoacyl-(acyl-carr 73.6 9.1 0.0002 36.3 6.5 35 23-58 3-40 (256)
499 TIGR01316 gltA glutamate synth 73.5 4.4 9.5E-05 42.6 4.6 34 24-58 132-165 (449)
500 PRK12770 putative glutamate sy 73.5 4.6 0.0001 40.8 4.6 34 25-59 18-51 (352)
No 1
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-105 Score=779.04 Aligned_cols=457 Identities=57% Similarity=0.969 Sum_probs=440.5
Q ss_pred CCCccchhhhHHhhcCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccH
Q 012484 1 MAEPKTKYDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESK 80 (462)
Q Consensus 1 ~~~~~~rYdRQl~l~G~~~q~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~K 80 (462)
|++++.|||||+|+||++||..|..++||++|||++|+|++||||++|||+||++|+..|+.+|++.|||+..+++|++|
T Consensus 3 ~~~~~~kYDRQlRlwge~gQ~~le~a~vCll~~~~~g~e~lKnLvl~Gigs~tvvd~~~v~~~d~g~nF~~~~~~~Gksr 82 (523)
T KOG2016|consen 3 MSEPKTKYDRQLRLWGEEGQAALESASVCLLNATPLGSEALKNLVLPGIGSFTVVDGSKVEQGDLGNNFFLDAKSIGKSR 82 (523)
T ss_pred ccchhhHHHHHHHHHHHHhHhhhhhceEEEecCChhHHHHHHhhcccccccEEEEecceeeecchhhHHHHHHHhhchhH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCeEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEeeccceEEEEEE
Q 012484 81 AKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRIS 160 (462)
Q Consensus 81 a~~~~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~ 160 (462)
|+++++.|+++||.|..+++.++++.+...+++||.+|++||++..+.....++.++||.+++|++.+.++|+.|++++.
T Consensus 83 A~a~~e~LqeLN~~V~~~~vee~p~~Li~~~p~ff~qFtvViatnl~E~~~~kl~~~l~~~~vpll~~rs~Gl~G~iRI~ 162 (523)
T KOG2016|consen 83 AEATLEFLQELNPSVSGSFVEESPDFLIDNDPSFFSQFTVVIATNLNEQTLLKLAEILREANVPLLLTRSYGLAGTIRIS 162 (523)
T ss_pred HHHHHHHHHHhChhhhcCccccChhhhhhcCchhhheeeeeeccccchhhhhhhHHHHHhcCCceEEEeeecceEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCceeeecCCCCCCCCcccCCCCchhhhhhhcccCCCCCCCccCCCcHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHH
Q 012484 161 VKEHTVVESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTREEKREFKE 240 (462)
Q Consensus 161 ~~~h~~~~~~~~~~~~~lrl~~p~p~l~~~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~~~~~~~g~~p~~~~~~~~f~~ 240 (462)
+.+|+++++|||+..+||||++|||+|.+|++++|++.|++..|+|+||+++++|++++|.+.|.|+.|++++|+.+|++
T Consensus 163 ikEH~iieshPD~~~~DLRL~nPwpeLi~~v~s~dLd~m~~a~~shiPyivll~K~l~~w~~~~n~~~p~t~~ekk~fkd 242 (523)
T KOG2016|consen 163 IKEHTIIESHPDNPLDDLRLDNPWPELIEYVDSTDLDVMDPAAHSHIPYIVLLVKYLEKWAKQHNGNLPSTYDEKKEFKD 242 (523)
T ss_pred eeeccccccCCCCcccccccCCCcHHHHHHHhhcCccccchhhhcCCCcHHHHHHHHHHHHHhhcCCCCccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcccCCCCCCHHHHHHHhhcccCCCCccHHHHHHHh--------cCCCChhHHHHHhh-------------------
Q 012484 241 LLKSKMVAIDEDNYKEAIEASFKVFAPPGIKLALSKVLQ--------SADSSFFPFSIAIG------------------- 293 (462)
Q Consensus 241 ~~~~~~~~~~~~nf~EA~~~~~~~~~~~~i~~~i~~~~~--------~~~~~f~~l~~al~------------------- 293 (462)
++..++...|++||+||+++++++|.++.||++++++++ ..+..||++++||+
T Consensus 243 ~i~~~~~~~DeeNyeEA~~a~~~Af~~~~i~ssv~dil~d~~c~~~~~~s~~FWim~~aLk~Fv~~e~~g~lPL~GtlPD 322 (523)
T KOG2016|consen 243 LIRSEMGKADEENYEEAIKAVNKAFAPTQIPSSVKDILHDDRCAQIGKDSSDFWIMAAALKEFVLKEEGGFLPLRGTLPD 322 (523)
T ss_pred HHHhcCCCCccccHHHHHHHHHHHhcccCCchhHHHHhcChHHHHhcCCCcHHHHHHHHHHHHHcccCCCccCCCCCCCc
Confidence 999888899999999999999999999999999999997 34678999999999
Q ss_pred ------------hhh-HHHHHhHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcccceEeeccccccccCCCChhhHh
Q 012484 294 ------------RPW-IFAEADCLAIEQRVRNNLKKLGREPESISKATIKSFCRNARKLKVCRYRLLEDEFSNPSVPDIQ 360 (462)
Q Consensus 294 ------------~iy-~ka~~D~~~~~~~~~~~l~~~g~~~~~i~~~~i~~f~~n~~~~~~i~~~sl~~~~~~p~~~~~~ 360 (462)
++| .||..|...|..+++++++++|+++++||+..++.||+|+..+++++|+++++++. |+..++.
T Consensus 323 M~ssTe~YI~Lq~iY~eKA~~D~~~v~~~v~~vlk~lgr~~~sIs~~~ik~fCkna~~lkv~r~~~~~eey~-~s~~~~~ 401 (523)
T KOG2016|consen 323 MTSSTEHYIRLQKIYHEKAEADALEVERRVQEVLKSLGRSPDSISDDVIKLFCKNAAKLKVCRGRTLAEEYE-KSITELI 401 (523)
T ss_pred cccCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCCccccCHHHHHHHHhhhhcceeeecchhhhhhc-ccchhhh
Confidence 899 99999999999999999999999999999999999999999999999999999998 7666666
Q ss_pred hhhcccchhhHHHHHHHHHHHHHHHHHcCCCCCCCCCCchhhHHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhCCCcc
Q 012484 361 KYLTDEDYSVAMGFYILLRAVDRFAANYNNYPGEFDGPMDEDISRLKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAEL 440 (462)
Q Consensus 361 ~~~~~~~~~~~~~~~~~l~a~~~F~~~~gr~P~~~~~~~~~D~~~l~~~~~~~~~~~~~~~~~i~~~~v~e~~r~~~~el 440 (462)
.+.++++++..+.||++|||+++|..+||+||| +.+.+.|+..+++++..++.++++++..+.++++.||||++++|+
T Consensus 402 ~~~~~e~~~~~~~~~~~lRavdrfl~~~gk~pG--~~~v~~D~~~lks~a~~~lse~g~~~~~v~d~~i~E~cR~gaaEl 479 (523)
T KOG2016|consen 402 KYSSNENYSNEIGFYLLLRAVDRFLKEKGKYPG--EGPVEIDITKLKSIAASLLSELGLDGNAVTDDAIHEICRFGAAEL 479 (523)
T ss_pred hhccccccchhHHHHHHHHHHHHHHHHhcCCCC--CCccchhhHHHHHHHHHHHHHhccCcccCcHHHHHHHHhcCCchh
Confidence 777777766788999999999999999999999 456789999999999999999999888899999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhc
Q 012484 441 HAVAAFIGGVASQEVIKVVF 460 (462)
Q Consensus 441 ~~vaa~~GGiaaQE~iK~i~ 460 (462)
|.|+||+||+||||+||+||
T Consensus 480 H~VsAfiGGiaaQEvIKLiT 499 (523)
T KOG2016|consen 480 HVVSAFIGGIAAQEVIKLIT 499 (523)
T ss_pred HHHHHHHhhHHHHHHHHHHH
Confidence 99999999999999999997
No 2
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=100.00 E-value=2.4e-87 Score=682.46 Aligned_cols=341 Identities=52% Similarity=0.861 Sum_probs=326.0
Q ss_pred chhhhHHhhcCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHH
Q 012484 6 TKYDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVC 85 (462)
Q Consensus 6 ~rYdRQl~l~G~~~q~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~ 85 (462)
+|||||+||||.+||++|++++|||+|+||+|+|++|||+++|||+|||+|++.|+++||++|||++.+|+|++||++++
T Consensus 1 ~rYDRQlrLwG~~gQ~~L~~s~VlliG~gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~~~~ 80 (425)
T cd01493 1 QKYDRQLRLWGEHGQAALESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAEATC 80 (425)
T ss_pred CcchHHHHHhHHHHHHHHhhCeEEEEcCcHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCeEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEeeccceEEEEEEeCCce
Q 012484 86 AFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHT 165 (462)
Q Consensus 86 ~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~h~ 165 (462)
++|+++||+|+++++...+..+...+++++++||+||+|+++...+..++++|+++++|+|.+++.|++|++++++++|+
T Consensus 81 ~~L~eLNp~V~i~~~~e~~~~ll~~~~~f~~~fdiVI~t~~~~~~~~~L~~~c~~~~iPlI~~~s~G~~G~v~v~~~~h~ 160 (425)
T cd01493 81 ELLQELNPDVNGSAVEESPEALLDNDPSFFSQFTVVIATNLPESTLLRLADVLWSANIPLLYVRSYGLYGYIRIQLKEHT 160 (425)
T ss_pred HHHHHHCCCCEEEEEecccchhhhhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEecccCEEEEEEEECCeE
Confidence 99999999999999988776665556789999999999999988889999999999999999999999999999999999
Q ss_pred eeecCCCCCCCCcccCCCCchhhhhhhcccCCCCCCCccCCCcHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHhc
Q 012484 166 VVESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTREEKREFKELLKSK 245 (462)
Q Consensus 166 ~~~~~~~~~~~~lrl~~p~p~l~~~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~~~~~~~g~~p~~~~~~~~f~~~~~~~ 245 (462)
++++||++..+||||++|||+|.+|++++|++.+++..|+|+||+++|+|++++|+..|+|.+|+++++|.+|++++.++
T Consensus 161 i~et~p~~~~~DLRL~~P~peL~~~~~~~dl~~ld~~~h~hvPy~viL~~~l~~w~~~~~g~~p~~~~ek~~f~~~i~~~ 240 (425)
T cd01493 161 IVESHPDNALEDLRLDNPFPELREHADSIDLDDMDPAEHSHTPYIVILIKYLEKWRSAHNGQLPSTYKEKKEFRDLVRSL 240 (425)
T ss_pred EEECCCCCCCcCcccCCCcHHHHHHHHhcCCccCChhhcCCCCHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHh
Confidence 99999999889999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cc-CCCCCCHHHHHHHhhcccCCCCccHHHHHHHh--------cCCCChhHHHHHhh-----------------------
Q 012484 246 MV-AIDEDNYKEAIEASFKVFAPPGIKLALSKVLQ--------SADSSFFPFSIAIG----------------------- 293 (462)
Q Consensus 246 ~~-~~~~~nf~EA~~~~~~~~~~~~i~~~i~~~~~--------~~~~~f~~l~~al~----------------------- 293 (462)
++ ..+++||+||+++++++++++.||++++++|+ ..+++||++++|||
T Consensus 241 ~~~~~~eeNf~EA~~~~~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~fwi~~~alk~F~~~~~g~lPl~G~lPDM~s~t 320 (425)
T cd01493 241 MRSNEDEENFEEAIKAVNKALNRTKIPSSVEEIFNDDRCENLTSQSSSFWIMARALKEFVAEENGLLPLPGTLPDMTADT 320 (425)
T ss_pred cccCCCccchHHHHHHHHHhhCCCCCcHHHHHHHhchhcccCCCCCchHHHHHHHHHHHHHhcCCCCCCCCCCCCCccCH
Confidence 76 58899999999999999999999999999996 23578999999999
Q ss_pred -------hhh-HHHHHhHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHhcccceEeeccc
Q 012484 294 -------RPW-IFAEADCLAIEQRVRNNLKKLGREPESISKATIKSFCRNARKLKVCRYRL 346 (462)
Q Consensus 294 -------~iy-~ka~~D~~~~~~~~~~~l~~~g~~~~~i~~~~i~~f~~n~~~~~~i~~~s 346 (462)
+|| +||++|+..|..+++++++++|++.++|++..|+.||||++.++++++++
T Consensus 321 ~~Yi~Lq~iY~~ka~~D~~~v~~~v~~~~~~~g~~~~~I~~~~i~~FCkna~~l~~i~~~~ 381 (425)
T cd01493 321 EKYIKLQNIYREKAEKDAAEVEKYVREILKSLGRSPDSISDKEIKLFCKNAAFLRVIRGRS 381 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhhHHhhhcccCCc
Confidence 799 99999999999999999999999999999999999999999999997764
No 3
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.2e-61 Score=494.91 Aligned_cols=360 Identities=24% Similarity=0.391 Sum_probs=297.7
Q ss_pred ccchhhhHHhhcCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHH
Q 012484 4 PKTKYDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKS 83 (462)
Q Consensus 4 ~~~rYdRQl~l~G~~~q~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~ 83 (462)
++++||||++++|.++|++|..++|+|.|++|+|.||||||+|+||+++||.|+..+..+||+.||+++++|||++||++
T Consensus 16 DE~LYSRQLYVlG~eAM~~m~~S~VLisGl~GLGvEIAKNliLaGVksvTlhD~~~~~~~DLssqf~L~E~DigknRA~a 95 (1013)
T KOG2012|consen 16 DESLYSRQLYVLGHEAMRRMQGSNVLISGLQGLGVEIAKNLILAGVKSVTLHDPRPVQLSDLSSQFYLSEEDIGKNRAEA 95 (1013)
T ss_pred hhhhhhhhhhhccHHHHHHHhhCcEEEecCCcccHHHHhhHhhhccceEEeeCCCcccHHhhccceeeeHHhcCCchHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCeEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEeeccceEEEEEEeCC
Q 012484 84 VCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKE 163 (462)
Q Consensus 84 ~~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~ 163 (462)
...+|.+||++|.|.+++.. .+.+++++|++||.|+.+.+...+|+++||+++|.||.+.++|++|++|||||+
T Consensus 96 s~~~LaeLN~yV~V~v~t~~------~~~e~L~~FqvVVlt~~~le~q~~i~~fch~~~i~fi~ad~RGLfg~lFCDFG~ 169 (1013)
T KOG2012|consen 96 SVEKLAELNNYVPVVVLTGP------LTEEFLSDFQVVVLTDASLEEQLKINDFCHSHGIAFIAADTRGLFGQLFCDFGE 169 (1013)
T ss_pred HHHHHHHhhcceeeEEecCc------ccHHHHhCCcEEEEecCchHHHHHHHHHHHhcCeEEEEeccchhhhhhhccCCC
Confidence 99999999999999987643 246789999999999999999999999999999999999999999999999999
Q ss_pred ceeeecCCCCCCCCcccCCCCchhhhhhhcccCCCCCCCccCCCcHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 012484 164 HTVVESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTREEKREFKELLK 243 (462)
Q Consensus 164 h~~~~~~~~~~~~~lrl~~p~p~l~~~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~~~~~~~g~~p~~~~~~~~f~~~~~ 243 (462)
++.+....+.. | +..++.+|+-+ .|.++.++. ...+...+|++.+ |.++
T Consensus 170 eF~v~D~tGee--------P---~t~mI~~Is~d---------~pGvvT~ld--~~rH~lEdGd~V~-------FsEv-- 218 (1013)
T KOG2012|consen 170 EFTVLDPTGEE--------P---LTGMIASISQD---------NPGVVTCLD--GARHGFEDGDLVT-------FSEV-- 218 (1013)
T ss_pred ceEEeCCCCCc--------c---hhhHHhhccCC---------CCceEEEec--CccccCccCCEEE-------EEee--
Confidence 77654221111 0 22455555322 122222211 1122345676554 4444
Q ss_pred hcccCCCCCCHHHHHHHhhcccCCCCccHHHHHHHhcCCCChhHHHHHhhhhhHHHHHhHHHHHHHHHHHHHhhCCCCCC
Q 012484 244 SKMVAIDEDNYKEAIEASFKVFAPPGIKLALSKVLQSADSSFFPFSIAIGRPWIFAEADCLAIEQRVRNNLKKLGREPES 323 (462)
Q Consensus 244 ~~~~~~~~~nf~EA~~~~~~~~~~~~i~~~i~~~~~~~~~~f~~l~~al~~iy~ka~~D~~~~~~~~~~~l~~~g~~~~~ 323 (462)
+||.++|+.. |.+|. ++++|++.+.|+..|..|.+
T Consensus 219 eGm~eLN~~~-------------P~kI~--------------------v~~p~sf~Igdt~~f~~y~~------------ 253 (1013)
T KOG2012|consen 219 EGMTELNDCK-------------PRKIT--------------------VLGPYSFSIGDTTEFGEYKK------------ 253 (1013)
T ss_pred ccccccCCCC-------------ceEEE--------------------EecCceEEeccccchhhhhc------------
Confidence 7888887642 22222 55678888877666655544
Q ss_pred CCHHHHHHHHHhcccceEeeccccccccCCCChhhHhhhhccc-chhhHHHHHHHHHHHHHHHHHcCCCCCCCCCCchhh
Q 012484 324 ISKATIKSFCRNARKLKVCRYRLLEDEFSNPSVPDIQKYLTDE-DYSVAMGFYILLRAVDRFAANYNNYPGEFDGPMDED 402 (462)
Q Consensus 324 i~~~~i~~f~~n~~~~~~i~~~sl~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~l~a~~~F~~~~gr~P~~~~~~~~~D 402 (462)
+|-+.++|.++.|+|+||++.+.+|.. ...|+ ++.++..+|++|+||++|.++|||.|.+++ +.|
T Consensus 254 ------GGi~tQVK~Pk~isfKsL~~~L~~P~f-----l~~df~k~~rp~~lH~af~AL~~F~~~~Gr~P~p~~---e~D 319 (1013)
T KOG2012|consen 254 ------GGIFTQVKVPKTISFKSLREALKEPEF-----LISDFAKFDRPPQLHLAFQALHQFQEAHGRLPRPGN---EED 319 (1013)
T ss_pred ------CceeEEeecCceEecccHHHhhcCCCe-----eeeccccccccHHHHHHHHHHHHHHHHhCCCCCCCC---hhh
Confidence 567999999999999999999999942 34455 468899999999999999999999999876 579
Q ss_pred HHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhc
Q 012484 403 ISRLKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAELHAVAAFIGGVASQEVIKVVF 460 (462)
Q Consensus 403 ~~~l~~~~~~~~~~~~~~~~~i~~~~v~e~~r~~~~el~~vaa~~GGiaaQE~iK~i~ 460 (462)
+++|.+++.++.+.++ ....++|++|++++..+++.|.||+|++||+||||++|+++
T Consensus 320 A~~l~~l~~~i~~~~~-~~~~vde~Lir~~s~~a~g~L~pm~A~~GG~vaQEvlKa~s 376 (1013)
T KOG2012|consen 320 AEELVELARDISEGLG-LEEDVDEKLIRHFSFSARGDLNPMVAFFGGIVAQEVLKACS 376 (1013)
T ss_pred HHHHHHHHHHhhhhcc-ccccchHHHHHHHHHhhccCcchHHHHHhhhhHHHHHHhhc
Confidence 9999999999988776 34579999999999999999999999999999999999986
No 4
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=100.00 E-value=1.2e-56 Score=497.04 Aligned_cols=360 Identities=24% Similarity=0.351 Sum_probs=285.6
Q ss_pred CccchhhhHHhhcCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHH
Q 012484 3 EPKTKYDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAK 82 (462)
Q Consensus 3 ~~~~rYdRQl~l~G~~~q~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~ 82 (462)
.+++|||||+|+||.++|++|++++|+|+||||+|+|+||||+++|||+|||+|+|.|+.+||+||||++++|||++||+
T Consensus 2 id~~lYsRQi~l~G~eaq~kL~~s~VLIiG~gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dIGk~Kae 81 (1008)
T TIGR01408 2 IDEALYSRQLYVLGDEAMQKMAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRNRAE 81 (1008)
T ss_pred chHhhhhhHHHhcCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHcCchHHH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCeEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcC--ceEEEEeeccceEEEEEE
Q 012484 83 SVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREAN--VMLIFARSYGLTGFVRIS 160 (462)
Q Consensus 83 ~~~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~--ip~i~~~~~G~~G~v~~~ 160 (462)
+++++|+++||+|++++++... +.+++++||+||+|.++.+.+..+|++||+++ +|||.+++.|++|++|+|
T Consensus 82 a~~~~L~eLNp~V~V~~~~~~l------~~e~l~~fdvVV~t~~~~~~~~~in~~cr~~~~~I~fI~~~~~G~~G~vf~D 155 (1008)
T TIGR01408 82 AVVKKLAELNPYVHVSSSSVPF------NEEFLDKFQCVVLTEMSLPLQKEINDFCHSQCPPIAFISADVRGLFGSLFCD 155 (1008)
T ss_pred HHHHHHHHHCCCceEEEecccC------CHHHHcCCCEEEECCCCHHHHHHHHHHHHHcCCCeEEEEEeecceEEEEEec
Confidence 9999999999999999876432 34588999999999999999999999999999 999999999999999999
Q ss_pred eCCc-eeeecCCCCCCCCcccCCCCchhhhhhhcccCCCCCCCccCCCcHHHHHHHHHHH-HHHhcCCCCCCCHHHHHHH
Q 012484 161 VKEH-TVVESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEE-WTNSHGGSLPSTREEKREF 238 (462)
Q Consensus 161 ~~~h-~~~~~~~~~~~~~lrl~~p~p~l~~~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~-~~~~~~g~~p~~~~~~~~f 238 (462)
+++| .+++..+..... ..+.++.-+ . |.+| .+++. -+...+|+.. .|
T Consensus 156 ~g~~f~~~d~~ge~p~~------------~~i~~i~~~--~-------~g~V---t~~~~~~h~l~~gd~V-------~f 204 (1008)
T TIGR01408 156 FGDEFEVLDTDGEEPKT------------GFIASITQA--N-------PGIV---TCLENHRHKLETGDFV-------TF 204 (1008)
T ss_pred CCCceEEEeCCCCCCCc------------ccccccccC--C-------CceE---EeecCcccCCcCCCEE-------EE
Confidence 9995 466654432211 111222100 0 1111 11111 1122344432 45
Q ss_pred HHHHHhcccCCCCCCHHHHHHHhhcccCCCCccHHHHHHHhcCCCChhHHHHHhhhhhHHHHHhHHHHHHHHHHHHHhhC
Q 012484 239 KELLKSKMVAIDEDNYKEAIEASFKVFAPPGIKLALSKVLQSADSSFFPFSIAIGRPWIFAEADCLAIEQRVRNNLKKLG 318 (462)
Q Consensus 239 ~~~~~~~~~~~~~~nf~EA~~~~~~~~~~~~i~~~i~~~~~~~~~~f~~l~~al~~iy~ka~~D~~~~~~~~~~~l~~~g 318 (462)
+++ +||.++|+.. ++++. +.+.|++...|.
T Consensus 205 ~ev--~gm~~lN~~~-------~~~i~--------------------------~~~~~~f~i~dt--------------- 234 (1008)
T TIGR01408 205 REV--NGMTGLNDGS-------PRKIT--------------------------VISPYSFSIGDT--------------- 234 (1008)
T ss_pred eec--ccccccCCCC-------ceeEE--------------------------ecCCceEEeccc---------------
Confidence 555 7888887642 12221 111222222222
Q ss_pred CCCCCCCHHHHHHHHHhcccceEeeccccccccCCCChhhHhhhhccc-chhhHHHHHHHHHHHHHHHHHcCCCCCCCCC
Q 012484 319 REPESISKATIKSFCRNARKLKVCRYRLLEDEFSNPSVPDIQKYLTDE-DYSVAMGFYILLRAVDRFAANYNNYPGEFDG 397 (462)
Q Consensus 319 ~~~~~i~~~~i~~f~~n~~~~~~i~~~sl~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~~l~a~~~F~~~~gr~P~~~~~ 397 (462)
..++++.-+|+++++|.++.++|+||++.+.+|.. .++|+ +++++..+|++|+|+.+|.++|||+|.+++
T Consensus 235 ---~~~~~y~~gG~~~qvK~p~~~~Fksl~~~l~~p~~-----~~~d~~k~~r~~~lh~~~~aL~~f~~~~g~~P~~~~- 305 (1008)
T TIGR01408 235 ---TELGPYLHGGIATQVKTPKTVFFKSLREQLKDPKC-----LIVDFSKPERPPEIHTAFQALDQFQEKYSRKPNVGC- 305 (1008)
T ss_pred ---cccchhhcCceEEEEeccccccccCHHHHHcCCcc-----cccchhhcCCchhHHHHHHHHHHHHHHcCCCCCCCC-
Confidence 23555566788999999999999999999999832 23444 345778899999999999999999999654
Q ss_pred CchhhHHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhc
Q 012484 398 PMDEDISRLKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAELHAVAAFIGGVASQEVIKVVF 460 (462)
Q Consensus 398 ~~~~D~~~l~~~~~~~~~~~~~~~~~i~~~~v~e~~r~~~~el~~vaa~~GGiaaQE~iK~i~ 460 (462)
++|++++.++++++.++.+...+.+++++++.++++++++++||||++||++||||||+++
T Consensus 306 --~~d~~~~~~~a~~i~~~~~~~~~~lde~li~~~~~~~~geisPv~Ai~GGi~aQEViKais 366 (1008)
T TIGR01408 306 --QQDAEELLKLATSISETLEEKVPDVDAKLVHWLSWTAQGFLSPMAAAVGGVVSQEVLKAVT 366 (1008)
T ss_pred --HHHHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHHhccccccHHHHHhchHHHHHHHHHhc
Confidence 6899999999999998877666679999999999999999999999999999999999986
No 5
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.6e-50 Score=374.03 Aligned_cols=294 Identities=31% Similarity=0.494 Sum_probs=234.3
Q ss_pred ccchhhhHHhhcCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHH
Q 012484 4 PKTKYDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKS 83 (462)
Q Consensus 4 ~~~rYdRQl~l~G~~~q~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~ 83 (462)
+...|||||||||.++|++|+++||+|+|.+|+|+|++|||+++||+++|++|+..|++.|++.|||+..+++|++||++
T Consensus 10 E~alYDRQIRLWG~~AQ~~lr~s~VLlig~k~lgaEiaKnivLaGV~~ltlLD~~~Vt~Ed~~~qFli~~~~vg~~raea 89 (331)
T KOG2014|consen 10 EIALYDRQIRLWGLEAQRRLRKSHVLLIGGKGLGAEIAKNIVLAGVGSLTLLDDRLVTEEDVGAQFLISASSVGQTRAEA 89 (331)
T ss_pred HHHHHHHHHHHccHHHHHhhhhceEEEecCchHHHHHHHHhhhcccceeEEeeccccchhcCCceeEEchhhhchHHHHH
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCeEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEeeccceEEEEEEeCC
Q 012484 84 VCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKE 163 (462)
Q Consensus 84 ~~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~ 163 (462)
..++++.+||.|++.+..+ ++.+.+.+||.+||+||.++.+.+....+|.+||+++++|+.++++|++||+|+++.+
T Consensus 90 s~erl~~LNPmV~v~~d~e---dl~ek~eeff~qFdlVV~~~~s~e~~~kvn~icrk~~i~F~a~d~~g~~Gy~F~dL~~ 166 (331)
T KOG2014|consen 90 SLERLQDLNPMVDVSVDKE---DLSEKDEEFFTQFDLVVATDQSREEKCKVNEICRKLNIAFYAGDCFGLCGYAFADLQE 166 (331)
T ss_pred HHHHHHhcCCceEEEechh---hhhhcchhhhhceeEEEEeccchhhhhhHHHHHHhcCceEEeccccceeeeeeeehhh
Confidence 9999999999999887654 4556678999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecCCCCCCCCcccCCCCchhhhhhhcccCCCCCCCccCCCcHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Q 012484 164 HTVVESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSHGGSLPSTREEKREFKELLK 243 (462)
Q Consensus 164 h~~~~~~~~~~~~~lrl~~p~p~l~~~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~~~~~~~g~~p~~~~~~~~f~~~~~ 243 (462)
|.+.+.+..+. + |+..+
T Consensus 167 h~y~~~~~~~~----------------------------------------~-------------~~~~k---------- 183 (331)
T KOG2014|consen 167 HKYLEEKTKVA----------------------------------------K-------------VSQTK---------- 183 (331)
T ss_pred hhhhhhccccc----------------------------------------c-------------ccccc----------
Confidence 98754321110 0 00000
Q ss_pred hcccCCCCCCHHHHHHHhhcccCCCCccHHHHHHHhcCCCChhHHHHHhhhhhHHHHHhHHHHHHHHHHHHHhhCCCCCC
Q 012484 244 SKMVAIDEDNYKEAIEASFKVFAPPGIKLALSKVLQSADSSFFPFSIAIGRPWIFAEADCLAIEQRVRNNLKKLGREPES 323 (462)
Q Consensus 244 ~~~~~~~~~nf~EA~~~~~~~~~~~~i~~~i~~~~~~~~~~f~~l~~al~~iy~ka~~D~~~~~~~~~~~l~~~g~~~~~ 323 (462)
....++..
T Consensus 184 --~~k~~~~~---------------------------------------------------------------------- 191 (331)
T KOG2014|consen 184 --RAKVDETE---------------------------------------------------------------------- 191 (331)
T ss_pred --ceeeeecc----------------------------------------------------------------------
Confidence 00000000
Q ss_pred CCHHHHHHHHHhcccceEeeccccccccCCCC-hhhHhhhhcccchhhHHHHHHHHHHHHHHHHHcCCCCCCCCCCchhh
Q 012484 324 ISKATIKSFCRNARKLKVCRYRLLEDEFSNPS-VPDIQKYLTDEDYSVAMGFYILLRAVDRFAANYNNYPGEFDGPMDED 402 (462)
Q Consensus 324 i~~~~i~~f~~n~~~~~~i~~~sl~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~l~a~~~F~~~~gr~P~~~~~~~~~D 402 (462)
.....+.+.|+|+++.++.+. +++..+ ..+....|++++++..|.+.+||-|| +...+|
T Consensus 192 -----------~~~vk~~~~~~~~~Eal~~~~~~k~k~~------~rr~~~~~~ll~v~l~f~~s~~r~pg---~~~~~d 251 (331)
T KOG2014|consen 192 -----------TEWVKRKVVFPSVKEALSVDWTKKEKRK------PRRTKKLYFLLPVLLKFRTSEGRDPG---ETSEED 251 (331)
T ss_pred -----------ceehhhhhcccCHHHHHhcccchhhhhh------hhccCcceehHHHHHHHHHhcCCCCc---cccHHH
Confidence 000111223444444444332 111100 13345678899999999999999999 355789
Q ss_pred HHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhc
Q 012484 403 ISRLKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAELHAVAAFIGGVASQEVIKVVF 460 (462)
Q Consensus 403 ~~~l~~~~~~~~~~~~~~~~~i~~~~v~e~~r~~~~el~~vaa~~GGiaaQE~iK~i~ 460 (462)
.+.+..|-++++... .-+++.+. +|..+.+.|++|+||++|||+||||||+|.
T Consensus 252 ~erl~~I~~ell~s~----~i~pd~~~-~f~~~~~~ef~Pv~AvVGGivaQevIk~is 304 (331)
T KOG2014|consen 252 LERLLQIRNELLESE----TIIPDELL-EFLSLIFTEFAPVCAVVGGILAQEVIKAIS 304 (331)
T ss_pred HHHHHHHHHhhcccc----ccCCchHH-HHHHhcccccCchhhhhhhHhHHHHHHHhh
Confidence 999999999988733 24556666 899999999999999999999999999985
No 6
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=100.00 E-value=4.3e-49 Score=381.71 Aligned_cols=156 Identities=29% Similarity=0.413 Sum_probs=147.7
Q ss_pred hhhhHHhhcCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHH
Q 012484 7 KYDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCA 86 (462)
Q Consensus 7 rYdRQl~l~G~~~q~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~ 86 (462)
+||||+++||.++|++|++++|+|+|+||+|+|+||||+++||++|||+|+|.++.+||+|||+++++|+|++||+++++
T Consensus 1 lYsRQl~~~G~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~ 80 (286)
T cd01491 1 LYSRQLYVLGHEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQA 80 (286)
T ss_pred CcccceeccCHHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCeEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEeeccceEEEEEEeCCcee
Q 012484 87 FLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHTV 166 (462)
Q Consensus 87 ~l~~lNp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~h~~ 166 (462)
+|+++||+|++++++.. .+.+++.+||+||+|.++.+.+..+|++||++++|||.+++.|++|++|+|+++|+.
T Consensus 81 ~L~eLNp~V~V~~~~~~------~~~~~l~~fdvVV~~~~~~~~~~~in~~c~~~~ipfI~a~~~G~~G~vf~dfg~~f~ 154 (286)
T cd01491 81 RLAELNPYVPVTVSTGP------LTTDELLKFQVVVLTDASLEDQLKINEFCHSPGIKFISADTRGLFGSIFCDFGDEFT 154 (286)
T ss_pred HHHHHCCCCEEEEEecc------CCHHHHhcCCEEEEecCCHHHHHHHHHHHHHcCCEEEEEeccccEEEEEecCCCeEE
Confidence 99999999999988653 134678899999999999999999999999999999999999999999999999775
Q ss_pred ee
Q 012484 167 VE 168 (462)
Q Consensus 167 ~~ 168 (462)
+-
T Consensus 155 ~~ 156 (286)
T cd01491 155 VY 156 (286)
T ss_pred Ee
Confidence 43
No 7
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=100.00 E-value=4.7e-39 Score=298.36 Aligned_cols=153 Identities=37% Similarity=0.604 Sum_probs=144.2
Q ss_pred chhhhHHhhcCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHH
Q 012484 6 TKYDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVC 85 (462)
Q Consensus 6 ~rYdRQl~l~G~~~q~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~ 85 (462)
+|||||+|+||.++|++|++++|+|+|+||+|+|++|||+++||++|+|+|+|.|+.+||+|||+++.+|+|++|+++++
T Consensus 2 ~~Y~Rqi~l~G~e~Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~a~~ 81 (197)
T cd01492 2 ALYDRQIRLWGLEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAEASL 81 (197)
T ss_pred chhhHHHHHhCHHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCeEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEeeccceEEEEEEe
Q 012484 86 AFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISV 161 (462)
Q Consensus 86 ~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~ 161 (462)
++|+++||+++++.+..... +...+++++||+||+|.++.+.+..++++|+++++|+|.+++.|++|++++++
T Consensus 82 ~~L~~lNp~v~i~~~~~~~~---~~~~~~~~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v~~d~ 154 (197)
T cd01492 82 ERLRALNPRVKVSVDTDDIS---EKPEEFFSQFDVVVATELSRAELVKINELCRKLGVKFYATGVHGLFGFVFADL 154 (197)
T ss_pred HHHHHHCCCCEEEEEecCcc---ccHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEecCCEEEEEEec
Confidence 99999999999998775432 33457889999999999999999999999999999999999999999999875
No 8
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=100.00 E-value=1.2e-38 Score=295.95 Aligned_cols=155 Identities=39% Similarity=0.649 Sum_probs=144.3
Q ss_pred hhhhHHhhcCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCccccccc--ccccccHHHHH
Q 012484 7 KYDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDE--SCVGESKAKSV 84 (462)
Q Consensus 7 rYdRQl~l~G~~~q~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~--~dvG~~Ka~~~ 84 (462)
+||||+++||.++|++|++++|+|+|+||+|+|++|||+++||++|+|+|+|.++++|++|||++++ +|+|++|++++
T Consensus 1 ~y~Rqi~l~G~~~q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka~~~ 80 (198)
T cd01485 1 LYDRQIRLWGDEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRAAAS 80 (198)
T ss_pred CccceeeccCHHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHHHHH
Confidence 6999999999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred HHHHHHhCCCCeEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEeeccceEEEEEEe
Q 012484 85 CAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISV 161 (462)
Q Consensus 85 ~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~ 161 (462)
+++|+++||+++++.+........+..++++++||+||+|.++...+..++++|+++++|+|.+++.|++|++++++
T Consensus 81 ~~~L~~lNp~v~i~~~~~~~~~~~~~~~~~~~~~dvVi~~~d~~~~~~~ln~~c~~~~ip~i~~~~~G~~G~v~~~~ 157 (198)
T cd01485 81 YEFLQELNPNVKLSIVEEDSLSNDSNIEEYLQKFTLVIATEENYERTAKVNDVCRKHHIPFISCATYGLIGYAFFDF 157 (198)
T ss_pred HHHHHHHCCCCEEEEEecccccchhhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEEEEch
Confidence 99999999999999887654322233457889999999999999999999999999999999999999999999876
No 9
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=100.00 E-value=8e-37 Score=285.00 Aligned_cols=167 Identities=24% Similarity=0.354 Sum_probs=149.6
Q ss_pred hhhhHHhh--cCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHH
Q 012484 7 KYDRQLRI--WGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSV 84 (462)
Q Consensus 7 rYdRQl~l--~G~~~q~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~ 84 (462)
|||||+++ ||.++|++|++++|+|+|+||+|++++++|+++|+++++|+|+|.|+++||+|||+++++|+|++|++++
T Consensus 1 rY~Rqi~l~~~g~~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~ 80 (202)
T TIGR02356 1 RYARQLLLPDIGEEGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVA 80 (202)
T ss_pred CCcceecchhcCHHHHHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHH
Confidence 79999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCeEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEeeccceEEEEEEeCCc
Q 012484 85 CAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEH 164 (462)
Q Consensus 85 ~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~h 164 (462)
+++|+++||+++++.+....... +-.++++++|+||+|.++.+.+..++++|+++++|+|.+++.|++|++++..|+.
T Consensus 81 ~~~l~~~np~v~i~~~~~~i~~~--~~~~~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~~~g~~G~~~~~~p~~ 158 (202)
T TIGR02356 81 AQRLRELNSDIQVTALKERVTAE--NLELLINNVDLVLDCTDNFATRYLINDACVALGTPLISAAVVGFGGQLMVFDPGG 158 (202)
T ss_pred HHHHHHhCCCCEEEEehhcCCHH--HHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCeEEEEEEeCCC
Confidence 99999999999998876543211 1135688999999999999999999999999999999999999999999876541
Q ss_pred eeeecCCCCCCCCcccCCCCch
Q 012484 165 TVVESKPDHFLDDLRLNNPWPE 186 (462)
Q Consensus 165 ~~~~~~~~~~~~~lrl~~p~p~ 186 (462)
...|+.|-||+
T Consensus 159 -----------~~~c~~c~~~~ 169 (202)
T TIGR02356 159 -----------EGPCLRCLFPD 169 (202)
T ss_pred -----------CCCChhhcCCC
Confidence 12366677765
No 10
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=100.00 E-value=2.5e-36 Score=289.41 Aligned_cols=202 Identities=18% Similarity=0.242 Sum_probs=166.2
Q ss_pred ccchhhhHHhh--cCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHH
Q 012484 4 PKTKYDRQLRI--WGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKA 81 (462)
Q Consensus 4 ~~~rYdRQl~l--~G~~~q~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka 81 (462)
+++||+||+++ ||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+|||+++++|+|++|+
T Consensus 9 ~~~rY~Rqi~l~~~g~~~Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka 88 (245)
T PRK05690 9 EMLRYNRQIILRGFDFDGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKV 88 (245)
T ss_pred HHHHHHHhccchhcCHHHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHH
Confidence 45799999988 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCeEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEeeccceEEEEEEe
Q 012484 82 KSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISV 161 (462)
Q Consensus 82 ~~~~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~ 161 (462)
++++++|+++||+++++.+...... +...++++++|+||+|.++.+.+..++++|+++++|+|++++.|+.|++.+..
T Consensus 89 ~~a~~~l~~lnp~v~i~~~~~~i~~--~~~~~~~~~~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~~G~v~~~~ 166 (245)
T PRK05690 89 ESARAALARINPHIAIETINARLDD--DELAALIAGHDLVLDCTDNVATRNQLNRACFAAKKPLVSGAAIRMEGQVTVFT 166 (245)
T ss_pred HHHHHHHHHHCCCCEEEEEeccCCH--HHHHHHHhcCCEEEecCCCHHHHHHHHHHHHHhCCEEEEeeeccCCceEEEEe
Confidence 9999999999999999887754321 11235788999999999999999999999999999999999999999998866
Q ss_pred CCceeeecCCCCCCCCcccCCCCchhhhhhhcccCCCCCCCccCCCcHHHHHHHHHHHHHH
Q 012484 162 KEHTVVESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEWTN 222 (462)
Q Consensus 162 ~~h~~~~~~~~~~~~~lrl~~p~p~l~~~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~~~~ 222 (462)
++.. ..|+.|.||+..+- . .+.......+.++.++..+.+.+..|-
T Consensus 167 ~~~~-----------~~c~~c~~~~~~~~--~--~~~~~~gv~~~~~~~~~~~~a~e~ik~ 212 (245)
T PRK05690 167 YQDD-----------EPCYRCLSRLFGEN--A--LTCVEAGVMAPLVGVIGSLQAMEAIKL 212 (245)
T ss_pred cCCC-----------CceeeeccCCCCCC--C--CCcccCCccchHHHHHHHHHHHHHHHH
Confidence 5410 13555656543221 0 111223345666777777777776653
No 11
>PRK08223 hypothetical protein; Validated
Probab=100.00 E-value=2.3e-35 Score=284.36 Aligned_cols=156 Identities=17% Similarity=0.188 Sum_probs=144.7
Q ss_pred cchhhhHHhhcCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHH
Q 012484 5 KTKYDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSV 84 (462)
Q Consensus 5 ~~rYdRQl~l~G~~~q~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~ 84 (462)
.+||+||+.++|.++|++|++++|+|+||||+|++++++|+++|||+|+|+|+|.|+.+||+||++++.+|+|++|++++
T Consensus 7 ~~~ysRq~~~iG~e~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a 86 (287)
T PRK08223 7 DEAFCRNLGWITPTEQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVL 86 (287)
T ss_pred HHHHhhhhhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCeEEEEecChhhhhcCC-cCCCCCCcEEEEcCCCh--HHHHHHHHHHHHcCceEEEEeeccceEEEEEEe
Q 012484 85 CAFLQELNDAVKAKFIEEYPEALIEMN-PPFFSQFTLVVATQLGE--EKMIKLDRICREANVMLIFARSYGLTGFVRISV 161 (462)
Q Consensus 85 ~~~l~~lNp~v~v~~~~~~~~~~~~~~-~~~~~~~dvVi~~~~~~--~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~ 161 (462)
+++++++||.++++++... +.+.+ .++++++|+||++.|+. +.+..+|+.|+++++|+|++++.|+.|++.+..
T Consensus 87 ~~~l~~iNP~v~V~~~~~~---l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~V~~~~~g~~gqv~v~~ 163 (287)
T PRK08223 87 AEMVRDINPELEIRAFPEG---IGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQRGIPALTAAPLGMGTALLVFD 163 (287)
T ss_pred HHHHHHHCCCCEEEEEecc---cCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCEEEEeccCCeEEEEEEc
Confidence 9999999999999987653 33333 46789999999999875 789999999999999999999999999998877
Q ss_pred CC
Q 012484 162 KE 163 (462)
Q Consensus 162 ~~ 163 (462)
|+
T Consensus 164 p~ 165 (287)
T PRK08223 164 PG 165 (287)
T ss_pred CC
Confidence 54
No 12
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=100.00 E-value=3.7e-35 Score=280.17 Aligned_cols=201 Identities=19% Similarity=0.234 Sum_probs=162.4
Q ss_pred cchhhhHHhhc--CHHHHHHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHH
Q 012484 5 KTKYDRQLRIW--GEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAK 82 (462)
Q Consensus 5 ~~rYdRQl~l~--G~~~q~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~ 82 (462)
++||+||+++| |.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+||++++++|+|++||+
T Consensus 2 ~~ry~Rq~~l~~~g~~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~ 81 (240)
T TIGR02355 2 MLRYNRQIILRGFDFDGQEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVE 81 (240)
T ss_pred ccceeeeeecccCCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHH
Confidence 57999999997 5899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCeEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEeeccceEEEEEEeC
Q 012484 83 SVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVK 162 (462)
Q Consensus 83 ~~~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~ 162 (462)
+++++|+++||+++++.+...... ++..+++.++|+||+|.|+.+.+..+|++|+++++|+|++++.|+.|++.+...
T Consensus 82 ~a~~~l~~inp~v~i~~~~~~i~~--~~~~~~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~~~~g~~G~v~~~~~ 159 (240)
T TIGR02355 82 SAKDALTQINPHIAINPINAKLDD--AELAALIAEHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSGAAIRMEGQVSVFTY 159 (240)
T ss_pred HHHHHHHHHCCCcEEEEEeccCCH--HHHHHHhhcCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecccEeEEEEEec
Confidence 999999999999999988654321 112357889999999999999999999999999999999999999999875431
Q ss_pred CceeeecCCCCCCCCcccCCCCchhhhhhhcccCCCCCCCccCCCcHHHHHHHHHHHHHH
Q 012484 163 EHTVVESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEWTN 222 (462)
Q Consensus 163 ~h~~~~~~~~~~~~~lrl~~p~p~l~~~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~~~~ 222 (462)
. ++ ..|+.|.+|...+. .........++.++.++..+++.+..+-
T Consensus 160 ~-------~~----~~c~~C~~~~~~~~----~~~~~~~gv~~p~~~~~~~~~a~e~ik~ 204 (240)
T TIGR02355 160 Q-------DG----EPCYRCLSRLFGEN----ALSCVEAGVMAPVVGVVGSLQAMEAIKV 204 (240)
T ss_pred C-------CC----CCccccccccCCCC----CCCccccCccchHHHHHHHHHHHHHHHH
Confidence 1 01 12444443322111 1112223345666777777777776663
No 13
>PRK08328 hypothetical protein; Provisional
Probab=100.00 E-value=2.5e-35 Score=280.33 Aligned_cols=196 Identities=26% Similarity=0.290 Sum_probs=164.3
Q ss_pred ccchhhhHHhhcCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccc-cHHH
Q 012484 4 PKTKYDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGE-SKAK 82 (462)
Q Consensus 4 ~~~rYdRQl~l~G~~~q~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~-~Ka~ 82 (462)
+.+||+||+++||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+||++++++|+|+ +|++
T Consensus 6 ~~~ry~Rq~~~~g~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~ 85 (231)
T PRK08328 6 ELERYDRQIMIFGVEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPL 85 (231)
T ss_pred HHHHHhhHHHhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHH
Confidence 347999999999999999999999999999999999999999999999999999999999999999999999999 5999
Q ss_pred HHHHHHHHhCCCCeEEEEecChhhhhcCC-cCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEeeccceEEEEEEe
Q 012484 83 SVCAFLQELNDAVKAKFIEEYPEALIEMN-PPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISV 161 (462)
Q Consensus 83 ~~~~~l~~lNp~v~v~~~~~~~~~~~~~~-~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~ 161 (462)
+++++++++||+++++.+.... .+.+ .++++++|+||+|.++.+.+..++++|+++++|+|++++.|++|++++..
T Consensus 86 ~a~~~l~~~np~v~v~~~~~~~---~~~~~~~~l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i~g~~~g~~G~v~~~~ 162 (231)
T PRK08328 86 SAKWKLERFNSDIKIETFVGRL---SEENIDEVLKGVDVIVDCLDNFETRYLLDDYAHKKGIPLVHGAVEGTYGQVTTIV 162 (231)
T ss_pred HHHHHHHHhCCCCEEEEEeccC---CHHHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeeccCEEEEEEEC
Confidence 9999999999999998876432 2222 35788999999999999999999999999999999999999999999888
Q ss_pred CCceeeecCCCCCCCCcccCCCCchhhhhhhcccCCCCCCCccCCCcHHHHHHHHHHHHH
Q 012484 162 KEHTVVESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEWT 221 (462)
Q Consensus 162 ~~h~~~~~~~~~~~~~lrl~~p~p~l~~~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~~~ 221 (462)
|+++ .|+.|.||+... ...+....+.+|.++..+.+.+..|
T Consensus 163 p~~~------------~c~~~~~~~~~~-------~~~~~~~~~~~~~ii~~~~a~e~~k 203 (231)
T PRK08328 163 PGKT------------KRLREIFPKVKK-------KKGKFPILGATAGVIGSIQAMEVIK 203 (231)
T ss_pred CCCC------------CCHHHhCCCCCC-------ccccCCcCchHHHHHHHHHHHHHHH
Confidence 7643 144555553211 0111223556677777777776665
No 14
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=100.00 E-value=1.8e-35 Score=298.14 Aligned_cols=206 Identities=19% Similarity=0.182 Sum_probs=170.0
Q ss_pred CccchhhhHHhh--cCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccH
Q 012484 3 EPKTKYDRQLRI--WGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESK 80 (462)
Q Consensus 3 ~~~~rYdRQl~l--~G~~~q~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~K 80 (462)
.+.+||+||+++ ||.++|++|++++|+|+||||+|++++++|+++|||+|+|+|+|.|+.+||+|||+++++|+|++|
T Consensus 4 ~~~~rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~K 83 (355)
T PRK05597 4 LDIARYRRQIMLGEIGQQGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPK 83 (355)
T ss_pred HHHhHhhheechhhcCHHHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChH
Confidence 456899999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCeEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEeeccceEEEEEE
Q 012484 81 AKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRIS 160 (462)
Q Consensus 81 a~~~~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~ 160 (462)
+++++++|+++||+++++++...... ++..++++++|+||+|.++...+..+|+.|+++++|+|.+++.|+.|++++.
T Consensus 84 a~~a~~~l~~~np~v~v~~~~~~i~~--~~~~~~~~~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~~~~~g~~g~v~~~ 161 (355)
T PRK05597 84 AESAREAMLALNPDVKVTVSVRRLTW--SNALDELRDADVILDGSDNFDTRHLASWAAARLGIPHVWASILGFDAQLSVF 161 (355)
T ss_pred HHHHHHHHHHHCCCcEEEEEEeecCH--HHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecCeEEEEEE
Confidence 99999999999999999987654321 1124578899999999999999999999999999999999999999999986
Q ss_pred eCCceeeecCCCCCCCCcccCCCCchhhhhhhcccCCCCCCCccCCCcHHHHHHHHHHHHHHhc
Q 012484 161 VKEHTVVESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSH 224 (462)
Q Consensus 161 ~~~h~~~~~~~~~~~~~lrl~~p~p~l~~~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~~~~~~ 224 (462)
.++++ .|+.|-||+...- ... .........+.+|.++..+++.+..|-..
T Consensus 162 ~~~~~------------~~~~~~~~~~~~~-~~~-~~c~~~gv~g~~~~~~g~~~a~e~ik~l~ 211 (355)
T PRK05597 162 HAGHG------------PIYEDLFPTPPPP-GSV-PSCSQAGVLGPVVGVVGSAMAMEALKLIT 211 (355)
T ss_pred cCCCC------------CCHHHhCCCCCCc-cCC-CCccccCcchhHHHHHHHHHHHHHHHHHh
Confidence 65432 2444555542110 000 01122335667788888888888777443
No 15
>PRK07411 hypothetical protein; Validated
Probab=100.00 E-value=2.3e-35 Score=300.74 Aligned_cols=205 Identities=20% Similarity=0.236 Sum_probs=172.0
Q ss_pred ccchhhhHHhh--cCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHH
Q 012484 4 PKTKYDRQLRI--WGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKA 81 (462)
Q Consensus 4 ~~~rYdRQl~l--~G~~~q~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka 81 (462)
+.+||+||+++ ||.++|++|++++|+||||||+|++++++|+++|||+|+|+|+|.|+.+||+|||+++.+|+|++||
T Consensus 15 ~~~ry~Rq~~l~~~g~~~q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka 94 (390)
T PRK07411 15 EYERYSRHLILPEVGLEGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKI 94 (390)
T ss_pred HHHHhhceechhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHH
Confidence 34799999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCeEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEeeccceEEEEEEe
Q 012484 82 KSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISV 161 (462)
Q Consensus 82 ~~~~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~ 161 (462)
++++++|+++||.++++.+...... ++..+++.++|+||+|.|+.+.+..+|++|++.++|+|++++.|++|++.+..
T Consensus 95 ~~a~~~l~~~np~v~v~~~~~~~~~--~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~~g~~~v~~ 172 (390)
T PRK07411 95 ESAKNRILEINPYCQVDLYETRLSS--ENALDILAPYDVVVDGTDNFPTRYLVNDACVLLNKPNVYGSIFRFEGQATVFN 172 (390)
T ss_pred HHHHHHHHHHCCCCeEEEEecccCH--HhHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEccCEEEEEEEC
Confidence 9999999999999999988754322 11246788999999999999999999999999999999999999999998764
Q ss_pred CCceeeecCCCCCCCCcccCCCCchhhhhhhcccCCCCCCCccCCCcHHHHHHHHHHHHHHhc
Q 012484 162 KEHTVVESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSH 224 (462)
Q Consensus 162 ~~h~~~~~~~~~~~~~lrl~~p~p~l~~~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~~~~~~ 224 (462)
+.. ..|+.|-||+...- ..+ .+.......+.+|.++..+++.+..|-..
T Consensus 173 ~~~------------~~c~~c~~~~~~~~-~~~-~~c~~~gvlg~~~~~~g~~~a~eaik~l~ 221 (390)
T PRK07411 173 YEG------------GPNYRDLYPEPPPP-GMV-PSCAEGGVLGILPGIIGVIQATETIKIIL 221 (390)
T ss_pred CCC------------CCChHHhcCCCCCc-ccC-CCCccCCcCcchHHHHHHHHHHHHHHHHc
Confidence 321 23666777743220 000 11223346777889999999998887544
No 16
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=100.00 E-value=4.7e-35 Score=278.47 Aligned_cols=155 Identities=25% Similarity=0.403 Sum_probs=143.5
Q ss_pred hhhhHHhh--cCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHH
Q 012484 7 KYDRQLRI--WGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSV 84 (462)
Q Consensus 7 rYdRQl~l--~G~~~q~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~ 84 (462)
|||||+++ ||.++|++|++++|+|+||||+|+++|++|+++||++++|+|+|.|+++||+|||+++++|+|++|++++
T Consensus 1 rY~Rq~~l~~~g~~~q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~ 80 (228)
T cd00757 1 RYSRQILLPEIGEEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAA 80 (228)
T ss_pred CcceeechhhcCHHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHH
Confidence 89999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCeEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEeeccceEEEEEEeCC
Q 012484 85 CAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKE 163 (462)
Q Consensus 85 ~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~ 163 (462)
+++|+++||+++++.+...... ++..++++++|+||+|.++...+..++++|+++++|+|++++.|+.|++.+..|+
T Consensus 81 ~~~l~~~np~~~i~~~~~~i~~--~~~~~~~~~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~g~~g~~g~v~~~~p~ 157 (228)
T cd00757 81 AERLRAINPDVEIEAYNERLDA--ENAEELIAGYDLVLDCTDNFATRYLINDACVKLGKPLVSGAVLGFEGQVTVFIPG 157 (228)
T ss_pred HHHHHHhCCCCEEEEecceeCH--HHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEEEEECCC
Confidence 9999999999999887654311 1123567899999999999999999999999999999999999999999887765
No 17
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=100.00 E-value=1.9e-33 Score=312.40 Aligned_cols=183 Identities=25% Similarity=0.389 Sum_probs=160.3
Q ss_pred ccchhhhHHhhcCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHhCC-----CeEEEEeCCcccccCCCcccccccccccc
Q 012484 4 PKTKYDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGI-----GSITVIDGSKVEVGDLGNNFMLDESCVGE 78 (462)
Q Consensus 4 ~~~rYdRQl~l~G~~~q~~L~~~~VlivG~g~lG~eiaknLvl~Gv-----~~itlvD~d~v~~~nl~r~f~~~~~dvG~ 78 (462)
.++|||||+++||.++|++|++++|+|||+||+|||++|||+++|| |+|+|+|.|.|+.+||+|||+++.+|||+
T Consensus 398 ~~~RYdrqi~l~G~~~Q~kL~~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dIGk 477 (1008)
T TIGR01408 398 RGDRYDAQIAVFGDTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHIGK 477 (1008)
T ss_pred hhhhhHHHHHHcCHHHHHHHhhCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEecccccCcCcCCChhHcCc
Confidence 3589999999999999999999999999999999999999999999 89999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhCCCCeEEEEecChhhhhc--CCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEeeccceEE
Q 012484 79 SKAKSVCAFLQELNDAVKAKFIEEYPEALIE--MNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGF 156 (462)
Q Consensus 79 ~Ka~~~~~~l~~lNp~v~v~~~~~~~~~~~~--~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~ 156 (462)
+||++++++++++||+++++++........+ .+.+||.++|+||+|.|+..++..+++.|+.+++|+|.+++.|+.|+
T Consensus 478 ~Ka~vaa~~l~~~Np~v~I~~~~~~v~~~~e~i~~~~f~~~~dvVi~alDn~~aR~~vn~~c~~~~iPli~~gt~G~~G~ 557 (1008)
T TIGR01408 478 PKSYTAADATLKINPQIKIDAHQNRVGPETETIFNDEFYEKLDVVINALDNVEARRYVDSRCLAFLKPLLESGTLGTKGN 557 (1008)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEeecChhhhhhhhHHHhhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEeccCceee
Confidence 9999999999999999999988765432111 13578899999999999999999999999999999999999999999
Q ss_pred EEEEeCCce-eeecCCCCCCCCcccCCCCchhhhh
Q 012484 157 VRISVKEHT-VVESKPDHFLDDLRLNNPWPELRKF 190 (462)
Q Consensus 157 v~~~~~~h~-~~~~~~~~~~~~lrl~~p~p~l~~~ 190 (462)
+++..|+++ +.+++++. .+...|+.+|..+
T Consensus 558 v~v~ip~~te~y~~~~d~----~~~~~P~Ctl~~~ 588 (1008)
T TIGR01408 558 TQVVVPHLTESYGSSRDP----PEKEIPFCTLKSF 588 (1008)
T ss_pred EEEEeCCCcCCCCCCCCC----CCCCCCcccccCC
Confidence 999999865 55555542 2334455555444
No 18
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=100.00 E-value=2.4e-34 Score=293.84 Aligned_cols=206 Identities=21% Similarity=0.263 Sum_probs=169.1
Q ss_pred cchhhhHHhh--cCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHH
Q 012484 5 KTKYDRQLRI--WGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAK 82 (462)
Q Consensus 5 ~~rYdRQl~l--~G~~~q~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~ 82 (462)
.+||+||+++ ||.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+||+|||+++++|+|++|++
T Consensus 20 ~~ry~Rq~~l~~~g~~~q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~ 99 (392)
T PRK07878 20 VARYSRHLIIPDVGVDGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQ 99 (392)
T ss_pred HHHhhheechhhcCHHHHHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHH
Confidence 4799999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCeEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEeeccceEEEEEEeC
Q 012484 83 SVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVK 162 (462)
Q Consensus 83 ~~~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~ 162 (462)
+++++|+++||+++++.+...... ++..++++++|+||+|.++...+..+|++|+++++|||++++.|++|++++..+
T Consensus 100 ~a~~~l~~~np~v~i~~~~~~i~~--~~~~~~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~~~~g~~G~v~~~~~ 177 (392)
T PRK07878 100 SARDSIVEINPLVNVRLHEFRLDP--SNAVELFSQYDLILDGTDNFATRYLVNDAAVLAGKPYVWGSIYRFEGQASVFWE 177 (392)
T ss_pred HHHHHHHHhCCCcEEEEEeccCCh--hHHHHHHhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEEEEEec
Confidence 999999999999999887654321 112467889999999999999999999999999999999999999999997653
Q ss_pred CceeeecCCCCCCCCcccCCCCchhhh--hhhcccCCCCCCCccCCCcHHHHHHHHHHHHHHhc
Q 012484 163 EHTVVESKPDHFLDDLRLNNPWPELRK--FAETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSH 224 (462)
Q Consensus 163 ~h~~~~~~~~~~~~~lrl~~p~p~l~~--~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~~~~~~ 224 (462)
+++ +.+ ..|+.|-||+... .+.++ ......+.+|.++..+++.+..|-..
T Consensus 178 ~~~------~~~--~~c~~c~~~~~~~~~~~~~~----~~~gv~g~~~~~~g~~~a~e~ik~l~ 229 (392)
T PRK07878 178 DAP------DGL--GLNYRDLYPEPPPPGMVPSC----AEGGVLGVLCASIGSIMGTEAIKLIT 229 (392)
T ss_pred CCC------CCC--CCeeeeecCCCCCccCCCCC----ccCCccchHHHHHHHHHHHHHHHHHh
Confidence 311 001 1244555553211 11222 22345677888888888888777443
No 19
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=100.00 E-value=2.7e-34 Score=290.10 Aligned_cols=208 Identities=18% Similarity=0.259 Sum_probs=170.8
Q ss_pred ccchhhhHHhh--cCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHH
Q 012484 4 PKTKYDRQLRI--WGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKA 81 (462)
Q Consensus 4 ~~~rYdRQl~l--~G~~~q~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka 81 (462)
+.+||+||+++ ||.++|++|++++|+|+|+||+|++++++|+++|||+++|+|+|.|+++||+|||+++++|+|++||
T Consensus 18 e~~ry~Rqi~l~~~g~~~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka 97 (370)
T PRK05600 18 ELRRTARQLALPGFGIEQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKV 97 (370)
T ss_pred HHHHhhcccchhhhCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHH
Confidence 45799999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCeEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEeeccceEEEEEEe
Q 012484 82 KSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISV 161 (462)
Q Consensus 82 ~~~~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~ 161 (462)
++++++|+++||+++++.+...... ++..++++++|+||+|.|+.+.+..+|++|+++++|+|++++.|+.|++.+..
T Consensus 98 ~~~~~~l~~~np~v~i~~~~~~i~~--~~~~~~~~~~DlVid~~Dn~~~r~~in~~~~~~~iP~v~~~~~g~~G~v~v~~ 175 (370)
T PRK05600 98 EVAAERLKEIQPDIRVNALRERLTA--ENAVELLNGVDLVLDGSDSFATKFLVADAAEITGTPLVWGTVLRFHGELAVFN 175 (370)
T ss_pred HHHHHHHHHHCCCCeeEEeeeecCH--HHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEEecCEEEEEEEe
Confidence 9999999999999999887653321 11235788999999999999999999999999999999999999999998754
Q ss_pred CCceeeecCCCCCCCCcccCCCCchhhhhhhcccCCCCCCCccCCCcHHHHHHHHHHHHHHhc
Q 012484 162 KEHTVVESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEWTNSH 224 (462)
Q Consensus 162 ~~h~~~~~~~~~~~~~lrl~~p~p~l~~~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~~~~~~ 224 (462)
++- + ....|+.|-||+...- +.. .+.......+.+|.++..+.+.+..|-..
T Consensus 176 ~~~-----~----~~~~~~~~l~~~~~~~-~~~-~~c~~~gvlg~~~~~ig~~~a~eaik~l~ 227 (370)
T PRK05600 176 SGP-----D----HRGVGLRDLFPEQPSG-DSI-PDCATAGVLGATTAVIGALMATEAIKFLT 227 (370)
T ss_pred cCC-----C----CCCCCcHhhCCCCCcc-ccC-CCCccCCcchhHHHHHHHHHHHHHHHHHh
Confidence 320 0 0134667777754321 000 01122335677888888888888777443
No 20
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=100.00 E-value=2.4e-33 Score=280.24 Aligned_cols=200 Identities=19% Similarity=0.261 Sum_probs=163.8
Q ss_pred cchhhhHHhh--cCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCccccccccccc--ccH
Q 012484 5 KTKYDRQLRI--WGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVG--ESK 80 (462)
Q Consensus 5 ~~rYdRQl~l--~G~~~q~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG--~~K 80 (462)
++||+||+++ ||.++|++|++++|+|||+||+|+++|++|+++|||+|+|+|+|.|+.+||+||++++++|+| ++|
T Consensus 2 ~~rY~Rq~~~~~~G~~~Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~K 81 (338)
T PRK12475 2 QERYSRQILFSGIGEEGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPK 81 (338)
T ss_pred cchhhhhhchhhcCHHHHHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccH
Confidence 4699999998 899999999999999999999999999999999999999999999999999999999999985 899
Q ss_pred HHHHHHHHHHhCCCCeEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEeeccceEEEEEE
Q 012484 81 AKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRIS 160 (462)
Q Consensus 81 a~~~~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~ 160 (462)
|++++++|+++||+++++.+...... ++..++++++|+||++.++.+.+..+|++|+++++|+|++++.|++|++++.
T Consensus 82 a~aa~~~l~~inp~v~i~~~~~~~~~--~~~~~~~~~~DlVid~~D~~~~r~~in~~~~~~~ip~i~~~~~g~~G~~~~~ 159 (338)
T PRK12475 82 AIAAKEHLRKINSEVEIVPVVTDVTV--EELEELVKEVDLIIDATDNFDTRLLINDLSQKYNIPWIYGGCVGSYGVTYTI 159 (338)
T ss_pred HHHHHHHHHHHCCCcEEEEEeccCCH--HHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEecccEEEEEEE
Confidence 99999999999999999887654321 1123567899999999999999999999999999999999999999999887
Q ss_pred eCCceeeecCCCCCCCCcccCCCCchhhhhhhcccCCCCCCCccCCCcHHHHHHHHHHHHHH
Q 012484 161 VKEHTVVESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEWTN 222 (462)
Q Consensus 161 ~~~h~~~~~~~~~~~~~lrl~~p~p~l~~~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~~~~ 222 (462)
.|+.+ .|+.|-||.++.-...+| .....+.++.++..+++.+..|-
T Consensus 160 ~P~~t------------pC~~Cl~~~~p~~~~~c~----~~Gvl~p~v~~iaslqa~EalK~ 205 (338)
T PRK12475 160 IPGKT------------PCLRCLMEHVPVGGATCD----TAGIIQPAVQIVVAYQVTEALKI 205 (338)
T ss_pred CCCCC------------CCHHHhcCCCCCCCCCCc----cCCcCchHHHHHHHHHHHHHHHH
Confidence 76522 256666665422111222 22234445566666777666653
No 21
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=100.00 E-value=6.6e-33 Score=277.15 Aligned_cols=201 Identities=20% Similarity=0.237 Sum_probs=164.5
Q ss_pred cchhhhHHhh--cCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCccccccccccc--ccH
Q 012484 5 KTKYDRQLRI--WGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVG--ESK 80 (462)
Q Consensus 5 ~~rYdRQl~l--~G~~~q~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG--~~K 80 (462)
++||+||+++ ||.++|++|++++|+|+|+||+|+++|++|+++|||+|+|+|.|.|+.+||+||++++++|+| ++|
T Consensus 2 ~~rY~Rq~~l~~~G~~~Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~K 81 (339)
T PRK07688 2 NERYSRQELFSPIGEEGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPK 81 (339)
T ss_pred cchhhhhhchhhcCHHHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcH
Confidence 5799999988 999999999999999999999999999999999999999999999999999999999999995 599
Q ss_pred HHHHHHHHHHhCCCCeEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEeeccceEEEEEE
Q 012484 81 AKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRIS 160 (462)
Q Consensus 81 a~~~~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~ 160 (462)
+++++++|+++||.++++.+...... ++..++++++|+||+|.++...+..+|++|+++++|+|++++.|++|++++.
T Consensus 82 a~aa~~~l~~inp~v~v~~~~~~~~~--~~~~~~~~~~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~~~~~g~~G~~~~~ 159 (339)
T PRK07688 82 AVAAKKRLEEINSDVRVEAIVQDVTA--EELEELVTGVDLIIDATDNFETRFIVNDAAQKYGIPWIYGACVGSYGLSYTI 159 (339)
T ss_pred HHHHHHHHHHHCCCcEEEEEeccCCH--HHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeeeeeeeEEEEE
Confidence 99999999999999999887654321 1113568899999999999999999999999999999999999999998876
Q ss_pred eCCceeeecCCCCCCCCcccCCCCchhhhhhhcccCCCCCCCccCCCcHHHHHHHHHHHHHHh
Q 012484 161 VKEHTVVESKPDHFLDDLRLNNPWPELRKFAETFDLNVPDPVAHKHTPYVVILIKMSEEWTNS 223 (462)
Q Consensus 161 ~~~h~~~~~~~~~~~~~lrl~~p~p~l~~~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~~~~~ 223 (462)
.|+. ..|+.|-||+++.-..++ .+....+.+|.++..+++.+..|-.
T Consensus 160 ~p~~------------~pC~~Cl~~~~~~~~~~c----~~~gv~~p~~~~i~~~~a~ealk~l 206 (339)
T PRK07688 160 IPGK------------TPCLRCLLQSIPLGGATC----DTAGIISPAVQIVASYQVTEALKLL 206 (339)
T ss_pred CCCC------------CCCeEeecCCCCCCCCCC----ccCCcccHHHHHHHHHHHHHHHHHH
Confidence 5541 124555555432211122 1223455567777778877776633
No 22
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=99.98 E-value=1.2e-30 Score=256.03 Aligned_cols=141 Identities=30% Similarity=0.444 Sum_probs=129.1
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEecChhh
Q 012484 27 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEA 106 (462)
Q Consensus 27 ~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~ 106 (462)
+|+|||+||+|+|++|||+++|||+|+|+|+|.++.+||+|||+++++|||++||++++++++++||+++++.+.....+
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~ 80 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD 80 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999887754332
Q ss_pred hhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEeeccceEEEEEEeCCce-eee
Q 012484 107 LIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHT-VVE 168 (462)
Q Consensus 107 ~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~h~-~~~ 168 (462)
. ..+.+++++||+||++.++.+.+..+|++|+.+++|+|.+++.|++|++++++|+++ +.+
T Consensus 81 ~-~~~~~f~~~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~~gt~G~~G~v~vi~p~~t~c~~ 142 (312)
T cd01489 81 P-DFNVEFFKQFDLVFNALDNLAARRHVNKMCLAADVPLIESGTTGFLGQVQVIKKGKTECYE 142 (312)
T ss_pred c-cchHHHHhcCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEecCcceeEEEEEcCCCCCccC
Confidence 1 123578999999999999999999999999999999999999999999999999855 444
No 23
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=99.97 E-value=3.9e-31 Score=255.88 Aligned_cols=202 Identities=25% Similarity=0.332 Sum_probs=165.2
Q ss_pred CccchhhhHHhhcCH--HHHHHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccH
Q 012484 3 EPKTKYDRQLRIWGE--QGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESK 80 (462)
Q Consensus 3 ~~~~rYdRQl~l~G~--~~q~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~K 80 (462)
++..||+||+++|+. ++|++|++++|+|+|+||+|++++++|+++|||+++|+|+|+|+.+||.||++++++|+|++|
T Consensus 6 ~~~~ry~Rqi~l~~~~~~~q~~l~~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~v~~snL~rq~~~~~~dig~~K 85 (254)
T COG0476 6 EEIERYSRQILLPGIGGEGQQKLKDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNLQRQFLFTEADVGKPK 85 (254)
T ss_pred HHHHhhcceeeecccCHHHHHHHhhCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCCcccccccCceeeecccccCCcH
Confidence 456899999999654 459999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCeEEEEecChhhhhcCC-cCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEeeccceEEEEE
Q 012484 81 AKSVCAFLQELNDAVKAKFIEEYPEALIEMN-PPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRI 159 (462)
Q Consensus 81 a~~~~~~l~~lNp~v~v~~~~~~~~~~~~~~-~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~ 159 (462)
++++++.++++||.+++..+.... ...+ .++++++|+|+.+.++...+..+|+.|+++++|++++++.|++|++++
T Consensus 86 a~~a~~~l~~ln~~v~v~~~~~~l---~~~~~~~~~~~~d~v~d~~dn~~~r~~iN~~~~~~~~pli~~~~~~~~g~~~~ 162 (254)
T COG0476 86 AEVAAKALRKLNPLVEVVAYLERL---DEENAEELIAQFDVVLDCTDNFETRYLINDACVKLGIPLVHGGAIGFEGQVTV 162 (254)
T ss_pred HHHHHHHHHHhCCCCeEEEeeccc---ChhhHHHHhccCCEEEECCCCHHHHHHHHHHHHHhCCCeEeeeeccceEEEEE
Confidence 999999999999999999887643 2223 377899999999999999999999999999999999999999999999
Q ss_pred EeCCceeeecCCCCCCCCcccCCCCchhhh--hhh-cccCCCCCCCccCCCcHHHHHHHHHHHHHH
Q 012484 160 SVKEHTVVESKPDHFLDDLRLNNPWPELRK--FAE-TFDLNVPDPVAHKHTPYVVILIKMSEEWTN 222 (462)
Q Consensus 160 ~~~~h~~~~~~~~~~~~~lrl~~p~p~l~~--~~~-~~d~~~~~~~~~~~~P~~v~l~~~~~~~~~ 222 (462)
+.++. +..|+.|-||+.+. ... .++ +......++..+..+.+++..+.
T Consensus 163 ~~~~~-----------~~~c~~~~~~~~~~~~~~~~~c~----~~gv~~~~~~~~~~~~~~~~~k~ 213 (254)
T COG0476 163 IIPGD-----------KTPCYRCLFPEKPPPGLVPTSCD----EAGVLGPLVGVVGSLQALEAIKL 213 (254)
T ss_pred EecCC-----------CCCcccccCCCCCCccccccccc----cCCccccccchhhhHHHHHHHHH
Confidence 98774 12355555555432 111 121 22333444555555666655543
No 24
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.97 E-value=5.7e-31 Score=268.27 Aligned_cols=205 Identities=22% Similarity=0.305 Sum_probs=167.8
Q ss_pred cchhhhHHhh--cCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHH
Q 012484 5 KTKYDRQLRI--WGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAK 82 (462)
Q Consensus 5 ~~rYdRQl~l--~G~~~q~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~ 82 (462)
.+||+||+++ ||.++|++|++++|+|+|+||+|++++++|+++||++|+|+|+|.|+.+||+||++++++|||++|++
T Consensus 113 ~~~y~r~i~l~~~g~~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~ 192 (376)
T PRK08762 113 DERYSRHLRLPEVGEEGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVD 192 (376)
T ss_pred HHHHHHhcchhhcCHHHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHH
Confidence 3799999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCeEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEeeccceEEEEEEeC
Q 012484 83 SVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVK 162 (462)
Q Consensus 83 ~~~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~ 162 (462)
+++++++++||.+++..+...... ++..++++++|+||+|+++...+..+|++|+++++|+|++++.|+.|++.+..|
T Consensus 193 ~~~~~l~~~np~v~v~~~~~~~~~--~~~~~~~~~~D~Vv~~~d~~~~r~~ln~~~~~~~ip~i~~~~~g~~g~v~~~~p 270 (376)
T PRK08762 193 SAAQRLAALNPDVQVEAVQERVTS--DNVEALLQDVDVVVDGADNFPTRYLLNDACVKLGKPLVYGAVFRFEGQVSVFDA 270 (376)
T ss_pred HHHHHHHHHCCCCEEEEEeccCCh--HHHHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEeccCEEEEEEEeC
Confidence 999999999999998877643221 011346789999999999999999999999999999999999999999998776
Q ss_pred CceeeecCCCCCCCCcccCCCCchhhh--hhhcccCCCCCCCccCCCcHHHHHHHHHHHHHHh
Q 012484 163 EHTVVESKPDHFLDDLRLNNPWPELRK--FAETFDLNVPDPVAHKHTPYVVILIKMSEEWTNS 223 (462)
Q Consensus 163 ~h~~~~~~~~~~~~~lrl~~p~p~l~~--~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~~~~~ 223 (462)
+.. | ....|+.|-||+... ....++ .....+.+|.++..+.+.+..|-.
T Consensus 271 ~~~-----~---~~~~c~~c~~~~~~~~~~~~~~~----~~gv~g~~~~~~~~~~a~e~~k~l 321 (376)
T PRK08762 271 GRQ-----R---GQAPCYRCLFPEPPPPELAPSCA----EAGVLGVLPGVIGLLQATEAIKLL 321 (376)
T ss_pred CCC-----C---CCCCCHhhcCCCCCCcccCCCCc----cCCcchhhHHHHHHHHHHHHHHHH
Confidence 521 0 113366666664321 111121 223456677888888887776643
No 25
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=99.97 E-value=2.5e-29 Score=255.46 Aligned_cols=139 Identities=25% Similarity=0.381 Sum_probs=128.0
Q ss_pred cEEEEcCChhHHHHHHHHHHhCC-----CeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEe
Q 012484 27 SVCLLNCGPTGSETLKNLVLGGI-----GSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIE 101 (462)
Q Consensus 27 ~VlivG~g~lG~eiaknLvl~Gv-----~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~ 101 (462)
+|+|||+||+|||++|||+++|| |+|+|+|.|.|+.+||+|||+++++|||++||+++++.++++||+++++.+.
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~~ 80 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITALQ 80 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence 69999999999999999999999 9999999999999999999999999999999999999999999999999987
Q ss_pred cChhhhhc--CCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEeeccceEEEEEEeCCce
Q 012484 102 EYPEALIE--MNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHT 165 (462)
Q Consensus 102 ~~~~~~~~--~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~h~ 165 (462)
....+..+ -+.+|++++|+||+|.|+.++|..+++.|+.+++|+|.+++.|+.|++++..|+++
T Consensus 81 ~~v~~~~~~~~~~~f~~~~DvVi~alDn~~aR~~vn~~C~~~~iPli~~gt~G~~G~v~v~iP~~t 146 (435)
T cd01490 81 NRVGPETEHIFNDEFWEKLDGVANALDNVDARMYVDRRCVYYRKPLLESGTLGTKGNTQVVIPHLT 146 (435)
T ss_pred cccChhhhhhhhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEecccceeEEEEEeCCCC
Confidence 65432211 13578999999999999999999999999999999999999999999999998743
No 26
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=99.97 E-value=4e-31 Score=250.23 Aligned_cols=142 Identities=25% Similarity=0.340 Sum_probs=129.3
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEecChhh
Q 012484 27 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEA 106 (462)
Q Consensus 27 ~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~ 106 (462)
+|+|+|+||+|+|++|+|+++|+|+|+|+|.|.|+.+||+|||+++++|+|++||++++++++++||+++++.+.....+
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~~ 80 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGP 80 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCCh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999987765432
Q ss_pred hhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEeeccceEEEEEEeCCce-eee
Q 012484 107 LIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKEHT-VVE 168 (462)
Q Consensus 107 ~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~h~-~~~ 168 (462)
..+.+.+++++||+||++.|+.+.+..+|+.|+.+++|+|.+++.|+.|++++..|+++ +.+
T Consensus 81 ~~~~~~~f~~~~DvVi~a~Dn~~aR~~ln~~c~~~~iplI~~g~~G~~G~v~vi~p~~t~c~~ 143 (234)
T cd01484 81 EQDFNDTFFEQFHIIVNALDNIIARRYVNGMLIFLIVPLIESGTEGFKGNAQVILPGMTECIE 143 (234)
T ss_pred hhhchHHHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcccCCceEEEEEcCCCCCCcc
Confidence 22224578999999999999999999999999999999999999999999999998743 444
No 27
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=99.97 E-value=1.1e-30 Score=250.98 Aligned_cols=144 Identities=21% Similarity=0.374 Sum_probs=129.5
Q ss_pred ccchhhhHHhhcCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHH
Q 012484 4 PKTKYDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKS 83 (462)
Q Consensus 4 ~~~rYdRQl~l~G~~~q~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~ 83 (462)
+.+||+||.+|||.++|++|++++|+|+|+||+|+++|++|+++|||+|||+|.|.++.+|++||+++..+++|++|+++
T Consensus 9 ~~~rf~R~~~L~G~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~ 88 (268)
T PRK15116 9 WRQRFGGTARLYGEKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEV 88 (268)
T ss_pred HHHHHhhHHHHhCHHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHH
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCeEEEEecChhhhhcCC-cCCC-CCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEee
Q 012484 84 VCAFLQELNDAVKAKFIEEYPEALIEMN-PPFF-SQFTLVVATQLGEEKMIKLDRICREANVMLIFARS 150 (462)
Q Consensus 84 ~~~~l~~lNp~v~v~~~~~~~~~~~~~~-~~~~-~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~ 150 (462)
+++++.++||+++++.+..... ..+ .+++ .+||+||+|.++...+..|+++|+++++|+|.++.
T Consensus 89 ~~~rl~~INP~~~V~~i~~~i~---~e~~~~ll~~~~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gG 154 (268)
T PRK15116 89 MAERIRQINPECRVTVVDDFIT---PDNVAEYMSAGFSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGG 154 (268)
T ss_pred HHHHHHhHCCCcEEEEEecccC---hhhHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECC
Confidence 9999999999999988754321 112 2334 47999999999989999999999999999998743
No 28
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=99.97 E-value=5e-30 Score=249.05 Aligned_cols=136 Identities=24% Similarity=0.350 Sum_probs=125.3
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEecChhh
Q 012484 27 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEA 106 (462)
Q Consensus 27 ~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~ 106 (462)
+|+|||+||+|+|++|||+++|||+|+|+|.|.|+.+||+|||+++.+|+|++||++++++|+++||+++++.+....
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i-- 78 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKI-- 78 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEeccc--
Confidence 699999999999999999999999999999999999999999999999999999999999999999999998876543
Q ss_pred hhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHc--------CceEEEEeeccceEEEEEEeCCce
Q 012484 107 LIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREA--------NVMLIFARSYGLTGFVRISVKEHT 165 (462)
Q Consensus 107 ~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~--------~ip~i~~~~~G~~G~v~~~~~~h~ 165 (462)
.+.+.+|+++||+||++.|+.++|..+|+.|.+. ++|+|.+++.|+.|++++..|+++
T Consensus 79 -~~~~~~f~~~fdvVi~alDn~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G~~G~v~vi~P~~t 144 (291)
T cd01488 79 -QDKDEEFYRQFNIIICGLDSIEARRWINGTLVSLLLYEDPESIIPLIDGGTEGFKGHARVILPGIT 144 (291)
T ss_pred -CchhHHHhcCCCEEEECCCCHHHHHHHHHHHHHhccccccccCccEEEEEEcccEEEEEEEcCCCC
Confidence 3345689999999999999999999999987654 599999999999999999998854
No 29
>PRK14852 hypothetical protein; Provisional
Probab=99.96 E-value=6.6e-30 Score=277.76 Aligned_cols=159 Identities=18% Similarity=0.171 Sum_probs=143.8
Q ss_pred cchhhhHHhhcCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHH
Q 012484 5 KTKYDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSV 84 (462)
Q Consensus 5 ~~rYdRQl~l~G~~~q~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~ 84 (462)
..+|+||+++||.++|++|++++|+|+||||+|++++++|+++|||+|+|+|.|.|+.+||+|||+++.+|||++|++++
T Consensus 312 ~~ry~Rqi~lig~e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaeva 391 (989)
T PRK14852 312 DIAFSRNLGLVDYAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVM 391 (989)
T ss_pred HHHhhchHhhcCHHHHHHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHH
Confidence 35899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCeEEEEecChhhhhcCCcCCCCCCcEEEEcCCC--hHHHHHHHHHHHHcCceEEEEeeccceEEEEEEeC
Q 012484 85 CAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLG--EEKMIKLDRICREANVMLIFARSYGLTGFVRISVK 162 (462)
Q Consensus 85 ~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~--~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~ 162 (462)
+++++++||+++|+++...... ++..+|++++|+||+|.|+ .+.+..+++.|+++++|+|++++.|+.|++.+..|
T Consensus 392 a~~l~~INP~v~I~~~~~~I~~--en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ag~~G~~g~v~v~~p 469 (989)
T PRK14852 392 TERALSVNPFLDIRSFPEGVAA--ETIDAFLKDVDLLVDGIDFFALDIRRRLFNRALELGIPVITAGPLGYSCALLVFMP 469 (989)
T ss_pred HHHHHHHCCCCeEEEEecCCCH--HHHHHHhhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEEeeccccCeeEEEEcC
Confidence 9999999999999988654321 1235688999999998886 34577888899999999999999999999999876
Q ss_pred Cce
Q 012484 163 EHT 165 (462)
Q Consensus 163 ~h~ 165 (462)
+..
T Consensus 470 ~~~ 472 (989)
T PRK14852 470 GGM 472 (989)
T ss_pred CCC
Confidence 543
No 30
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=99.96 E-value=9.5e-31 Score=249.53 Aligned_cols=199 Identities=22% Similarity=0.296 Sum_probs=173.2
Q ss_pred ccchhhhHHhh--cCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHH
Q 012484 4 PKTKYDRQLRI--WGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKA 81 (462)
Q Consensus 4 ~~~rYdRQl~l--~G~~~q~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka 81 (462)
+-.||+||+.+ +|.+||.+|++++|+||||||+||.++..|+.+|||++-|+|.|.|+.+||.||.+.+++.+|+.||
T Consensus 43 ei~RYsRQlilpe~gV~GQ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~DvVe~sNlhRQVlh~ea~vg~~Ka 122 (427)
T KOG2017|consen 43 EILRYSRQLILPEFGVHGQLSLKNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDVVELSNLHRQVLHTEARVGMHKA 122 (427)
T ss_pred HHHhhhheeeccccccccccccCCccEEEEccCCCCCHHHHHHHHcCCCeecccccceeehhhHHHHHhhhhhhhhhHHH
Confidence 34799999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCeEEEEecChhhhhcCC-cCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEeeccceEEEEEE
Q 012484 82 KSVCAFLQELNDAVKAKFIEEYPEALIEMN-PPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRIS 160 (462)
Q Consensus 82 ~~~~~~l~~lNp~v~v~~~~~~~~~~~~~~-~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~ 160 (462)
++++..++++||.|++..+.+. +...| .+.+++||+|+.|+|+..+|+.+++.|...|+|+|++...++.|++.+.
T Consensus 123 ~sA~~~lr~lNs~v~v~~y~~~---L~~sNa~~Ii~~YdvVlDCTDN~~TRYLisD~CVlLgkpLVSgSaLr~EGQLtvY 199 (427)
T KOG2017|consen 123 ESAAAFLRRLNSHVEVQTYNEF---LSSSNAFDIIKQYDVVLDCTDNVPTRYLISDVCVLLGKPLVSGSALRWEGQLTVY 199 (427)
T ss_pred HHHHHHHHhcCCCceeeechhh---ccchhHHHHhhccceEEEcCCCccchhhhhhHHHHcCCcccccccccccceeEEe
Confidence 9999999999999998887653 33333 4789999999999999999999999999999999999999999999774
Q ss_pred e-CCceeeecCCCCCCCCcccCCCCchhhh--hhhcccCCCCCCCccCCCcHHHHHHHHHHHHHH
Q 012484 161 V-KEHTVVESKPDHFLDDLRLNNPWPELRK--FAETFDLNVPDPVAHKHTPYVVILIKMSEEWTN 222 (462)
Q Consensus 161 ~-~~h~~~~~~~~~~~~~lrl~~p~p~l~~--~~~~~d~~~~~~~~~~~~P~~v~l~~~~~~~~~ 222 (462)
- ++ ..|+.|.||..+. -+.+| .+....+.++.++..+++++..|.
T Consensus 200 ny~~-------------GPCYRClFP~Ppp~~~vt~C----~dgGVlGpv~GviG~mQALE~iKl 247 (427)
T KOG2017|consen 200 NYNN-------------GPCYRCLFPNPPPPEAVTNC----ADGGVLGPVTGVIGCMQALETIKL 247 (427)
T ss_pred ecCC-------------CceeeecCCCCcChHHhccc----ccCceeecchhhhhHHHHHHHHHH
Confidence 2 22 2366676665433 43444 455677888999999999998874
No 31
>PRK14851 hypothetical protein; Provisional
Probab=99.96 E-value=7.7e-30 Score=273.93 Aligned_cols=159 Identities=18% Similarity=0.189 Sum_probs=145.7
Q ss_pred ccchhhhHHhhcCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHH
Q 012484 4 PKTKYDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKS 83 (462)
Q Consensus 4 ~~~rYdRQl~l~G~~~q~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~ 83 (462)
..++|+||+++||.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+||+||++++.+|||++|+++
T Consensus 22 ~~~ry~R~~~l~g~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v 101 (679)
T PRK14851 22 REAAFSRNIGLFTPGEQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAV 101 (679)
T ss_pred HHHHhhhhHHhcCHHHHHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHH
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCeEEEEecChhhhhcCC-cCCCCCCcEEEEcCCC--hHHHHHHHHHHHHcCceEEEEeeccceEEEEEE
Q 012484 84 VCAFLQELNDAVKAKFIEEYPEALIEMN-PPFFSQFTLVVATQLG--EEKMIKLDRICREANVMLIFARSYGLTGFVRIS 160 (462)
Q Consensus 84 ~~~~l~~lNp~v~v~~~~~~~~~~~~~~-~~~~~~~dvVi~~~~~--~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~ 160 (462)
++++++++||+++|+++..... +.+ .++++++|+||+|.|+ ...+..+++.|+++++|+|.+++.|+.|++.+.
T Consensus 102 ~~~~l~~inP~~~I~~~~~~i~---~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~i~~g~~G~~g~~~~~ 178 (679)
T PRK14851 102 MKEQALSINPFLEITPFPAGIN---ADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPVITAGPLGYSSAMLVF 178 (679)
T ss_pred HHHHHHHhCCCCeEEEEecCCC---hHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeecccccceEEEE
Confidence 9999999999999998876432 223 4688999999999886 457889999999999999999999999999998
Q ss_pred eCCce
Q 012484 161 VKEHT 165 (462)
Q Consensus 161 ~~~h~ 165 (462)
.|+..
T Consensus 179 ~p~~~ 183 (679)
T PRK14851 179 TPQGM 183 (679)
T ss_pred cCCCC
Confidence 87643
No 32
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=99.96 E-value=9.5e-30 Score=236.00 Aligned_cols=119 Identities=29% Similarity=0.384 Sum_probs=107.5
Q ss_pred ccchhhhHHhhcCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHH
Q 012484 4 PKTKYDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKS 83 (462)
Q Consensus 4 ~~~rYdRQl~l~G~~~q~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~ 83 (462)
+.+|||||+++||.++|++|++++|+|+|+||+|+|++|||+++|||+|+|+|+|.|+.+||+|||++++ ++|++|+++
T Consensus 5 E~~RYsRQIrLwG~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~Ve~SNL~RQfl~~~-dvGk~KAea 83 (287)
T PTZ00245 5 EAVRYDRQIRLWGKSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVTDADVCTNYLMQG-EAGGTRGAR 83 (287)
T ss_pred HHHHHhHHHHHhCHHHHHHHhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCccchhhhcccccccc-ccCCcHHHH
Confidence 3489999999999999999999999999999999999999999999999999999999999999999997 689999999
Q ss_pred HHHHHHHhCCCCeEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHH
Q 012484 84 VCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKM 131 (462)
Q Consensus 84 ~~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~ 131 (462)
++++|+++||+|+++.+.... . .-.+|++||+++.+.+..
T Consensus 84 Aa~~L~eLNP~V~V~~i~~rl---d-----~~n~fqvvV~~~~~le~a 123 (287)
T PTZ00245 84 ALGALQRLNPHVSVYDAVTKL---D-----GSSGTRVTMAAVITEEDA 123 (287)
T ss_pred HHHHHHHHCCCcEEEEccccc---C-----CcCCceEEEEEcccHHHH
Confidence 999999999999998775322 1 134899999999886543
No 33
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=99.96 E-value=8.4e-29 Score=216.60 Aligned_cols=134 Identities=31% Similarity=0.447 Sum_probs=118.9
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEecC
Q 012484 24 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY 103 (462)
Q Consensus 24 ~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~~ 103 (462)
++++|+|+|+|++|++++++|+++|+++|+|+|+|.|+++|++||++++.+|+|++|+++++++|+++||+++++.+...
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999988765
Q ss_pred hhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEeeccceEEEEE
Q 012484 104 PEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRI 159 (462)
Q Consensus 104 ~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~ 159 (462)
... +...++++++|+||+|.++.+.+..++++|+++++|+|.+++.|++|+++.
T Consensus 81 ~~~--~~~~~~~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~~~g~~G~~~~ 134 (135)
T PF00899_consen 81 IDE--ENIEELLKDYDIVIDCVDSLAARLLLNEICREYGIPFIDAGVNGFYGQVVM 134 (135)
T ss_dssp CSH--HHHHHHHHTSSEEEEESSSHHHHHHHHHHHHHTT-EEEEEEEETTEEEEEE
T ss_pred ccc--ccccccccCCCEEEEecCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEEEE
Confidence 411 112345679999999999999999999999999999999999999999965
No 34
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=99.96 E-value=1.9e-28 Score=229.82 Aligned_cols=154 Identities=20% Similarity=0.134 Sum_probs=136.0
Q ss_pred ccchhhhHHhhcCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHH
Q 012484 4 PKTKYDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKS 83 (462)
Q Consensus 4 ~~~rYdRQl~l~G~~~q~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~ 83 (462)
+++.|.++.+.||.++|++|++++|+|+|+||+|++++++|+++||++|+|+|.|.|+.+||+||+++ ++|+|++|+++
T Consensus 7 ~~~~~~~~~~~~g~~~q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~-~~dvG~~Ka~~ 85 (212)
T PRK08644 7 MEEFEAMLASRHTPKLLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYF-ISQIGMPKVEA 85 (212)
T ss_pred HHHHHHHHHhhcCHHHHHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEee-hhhCCChHHHH
Confidence 34678888888999999999999999999999999999999999999999999999999999999865 78999999999
Q ss_pred HHHHHHHhCCCCeEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHc-CceEEEEeeccceEEEEEE
Q 012484 84 VCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREA-NVMLIFARSYGLTGFVRIS 160 (462)
Q Consensus 84 ~~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~-~ip~i~~~~~G~~G~v~~~ 160 (462)
++++|+++||+++++.+....... +..++++++|+||.|.++.+.+..+++.|+++ ++|+|.+...|.+|++...
T Consensus 86 a~~~l~~lnp~v~v~~~~~~i~~~--~~~~~~~~~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~~~~~~~~~~~~~~ 161 (212)
T PRK08644 86 LKENLLEINPFVEIEAHNEKIDED--NIEELFKDCDIVVEAFDNAETKAMLVETVLEHPGKKLVAASGMAGYGDSNSI 161 (212)
T ss_pred HHHHHHHHCCCCEEEEEeeecCHH--HHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhCCCCEEEeehhhccCCceEE
Confidence 999999999999998887543221 12357889999999999999999999999999 9999998777777766543
No 35
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=99.95 E-value=5.3e-28 Score=213.65 Aligned_cols=133 Identities=29% Similarity=0.377 Sum_probs=122.5
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEecChhh
Q 012484 27 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEA 106 (462)
Q Consensus 27 ~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~ 106 (462)
+|+|+|+||+|++++++|+++|+++|+|+|+|.++++|++||++++.+|+|++|+++++++++++||+++++.+......
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999888754322
Q ss_pred hhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEeeccceEEEEEEe
Q 012484 107 LIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISV 161 (462)
Q Consensus 107 ~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~ 161 (462)
. ...++++++|+||+|.++.+.+..++++|+++++|+|.+++.|+.|+++++.
T Consensus 81 ~--~~~~~~~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~~g~~g~~~~~~ 133 (143)
T cd01483 81 D--NLDDFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGGLGLGGDIQVID 133 (143)
T ss_pred h--hHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCCcEEEEEEEE
Confidence 1 1146788999999999999999999999999999999999999999999876
No 36
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.95 E-value=9.2e-28 Score=227.08 Aligned_cols=137 Identities=23% Similarity=0.345 Sum_probs=122.2
Q ss_pred cCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCC
Q 012484 15 WGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDA 94 (462)
Q Consensus 15 ~G~~~q~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~ 94 (462)
+|.++|++|++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+++|++||+++..+|+|++|+++++++|+++||+
T Consensus 1 ~G~e~~~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~ 80 (231)
T cd00755 1 YGEEGLEKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPE 80 (231)
T ss_pred CCHHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEecChhhhhcCCcCCC-CCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEeeccc
Q 012484 95 VKAKFIEEYPEALIEMNPPFF-SQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGL 153 (462)
Q Consensus 95 v~v~~~~~~~~~~~~~~~~~~-~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~ 153 (462)
++++.+...... ++..+++ .+||+||+|.|+...+..++++|+++++|+|.++..|-
T Consensus 81 ~~V~~~~~~i~~--~~~~~l~~~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~g~g~ 138 (231)
T cd00755 81 CEVDAVEEFLTP--DNSEDLLGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSMGAGG 138 (231)
T ss_pred cEEEEeeeecCH--hHHHHHhcCCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeCCcC
Confidence 999987753221 1112233 47999999999999999999999999999999865553
No 37
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=7.2e-28 Score=238.11 Aligned_cols=154 Identities=26% Similarity=0.416 Sum_probs=139.8
Q ss_pred HHHHHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeE
Q 012484 18 QGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKA 97 (462)
Q Consensus 18 ~~q~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v 97 (462)
+-++++.++|||||||||+|||++|||+++|+++|+|||-|+++.+||+|||+|+.++||++||.+++...+..||.+++
T Consensus 5 ~~~eai~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnpn~~l 84 (603)
T KOG2013|consen 5 EKHEAIKSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNPNIKL 84 (603)
T ss_pred HHHHHhccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhCCCCce
Confidence 34678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEeeccceEEEEEEeCC-ceeeecCCC
Q 012484 98 KFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKE-HTVVESKPD 172 (462)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~-h~~~~~~~~ 172 (462)
..+..+..+. +.+.+||++||+|..+.|+.++|..+|++|.-..+|+|.+|+.||.||+.+...+ ..+++.+|.
T Consensus 85 ~~yhanI~e~-~fnv~ff~qfdiV~NaLDNlaAR~yVNr~C~~a~vPLIesGt~Gf~GQv~~ii~GkTECyeC~pK 159 (603)
T KOG2013|consen 85 VPYHANIKEP-KFNVEFFRQFDIVLNALDNLAARRYVNRMCLAASVPLIESGTGGFLGQVQVIIKGKTECYECIPK 159 (603)
T ss_pred EeccccccCc-chHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhcCCceecCcccccceEEEEecCCcceecccCC
Confidence 9887655433 2356789999999999999999999999999999999999999999999998876 566665544
No 38
>PRK07877 hypothetical protein; Provisional
Probab=99.94 E-value=1.3e-26 Score=249.43 Aligned_cols=147 Identities=16% Similarity=0.222 Sum_probs=133.8
Q ss_pred chhhhHHhhcCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHhCC-CeEEEEeCCcccccCCCcccccccccccccHHHHH
Q 012484 6 TKYDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGI-GSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSV 84 (462)
Q Consensus 6 ~rYdRQl~l~G~~~q~~L~~~~VlivG~g~lG~eiaknLvl~Gv-~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~ 84 (462)
.||+||+.+||.++|++|++++|+|+|+| +|+.+|.+|+++|| |+|+|+|.|.|+.+||+|| +++..|+|++|++++
T Consensus 88 ~r~~Rn~~~ig~~~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq-~~~~~diG~~Kv~~a 165 (722)
T PRK07877 88 VRLDRNRNKITAEEQERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRV-PAGVFDLGVNKAVVA 165 (722)
T ss_pred HHhhchhhhCCHHHHHHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccc-cCChhhcccHHHHHH
Confidence 79999999999999999999999999996 99999999999996 9999999999999999998 689999999999999
Q ss_pred HHHHHHhCCCCeEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEeeccceEEEE
Q 012484 85 CAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVR 158 (462)
Q Consensus 85 ~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~ 158 (462)
+++|.++||+++|+++...... ++-.++++++|+||+|.|+.+.+..+|+.|+++++|+|+++..+ |++.
T Consensus 166 ~~~l~~inp~i~v~~~~~~i~~--~n~~~~l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~~~~~--g~~~ 235 (722)
T PRK07877 166 ARRIAELDPYLPVEVFTDGLTE--DNVDAFLDGLDVVVEECDSLDVKVLLREAARARRIPVLMATSDR--GLLD 235 (722)
T ss_pred HHHHHHHCCCCEEEEEeccCCH--HHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCC--CCcC
Confidence 9999999999999998764331 11246788999999999999999999999999999999988555 7764
No 39
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=99.93 E-value=2.4e-26 Score=211.37 Aligned_cols=145 Identities=23% Similarity=0.361 Sum_probs=130.8
Q ss_pred ccchhhhHHhhcCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHH
Q 012484 4 PKTKYDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKS 83 (462)
Q Consensus 4 ~~~rYdRQl~l~G~~~q~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~ 83 (462)
..+||.|--||+|.++.++|++++|||+|+||+||.++..|+|+|+|++||+|.|.|+.+|++||.-....++|++|+++
T Consensus 9 ~~~rf~~~~~l~G~~~lekl~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~v 88 (263)
T COG1179 9 YRQRFGGIARLYGEDGLEKLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEV 88 (263)
T ss_pred HHHHhhhHHHHcChhHHHHHhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHH
Confidence 35799999999999999999999999999999999999999999999999999999999999999888889999999999
Q ss_pred HHHHHHHhCCCCeEEEEecChhhhhcCC-cCC-CCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEeec
Q 012484 84 VCAFLQELNDAVKAKFIEEYPEALIEMN-PPF-FSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSY 151 (462)
Q Consensus 84 ~~~~l~~lNp~v~v~~~~~~~~~~~~~~-~~~-~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~ 151 (462)
+++++..+||+++|+.++... ++++ .++ ..+||+||.|.|+......|..+|+++++|+|.++..
T Consensus 89 m~eri~~InP~c~V~~~~~f~---t~en~~~~~~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss~Ga 155 (263)
T COG1179 89 MKERIKQINPECEVTAINDFI---TEENLEDLLSKGFDYVIDAIDSVRAKVALIAYCRRNKIPVISSMGA 155 (263)
T ss_pred HHHHHHhhCCCceEeehHhhh---CHhHHHHHhcCCCCEEEEchhhhHHHHHHHHHHHHcCCCEEeeccc
Confidence 999999999999999876532 2223 233 3579999999999999999999999999999986543
No 40
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.1e-25 Score=212.91 Aligned_cols=147 Identities=22% Similarity=0.358 Sum_probs=134.4
Q ss_pred CHHHHHHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCC
Q 012484 16 GEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAV 95 (462)
Q Consensus 16 G~~~q~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v 95 (462)
+.+..+.|.+.+|+|+|+||+|||++|||+++|++.+.++|-|+++.+||+|||+|++.|+|++||++++++++...|..
T Consensus 31 ~~e~l~~l~~~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~Rvp~~ 110 (422)
T KOG2015|consen 31 SEENLEFLQDCKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNRRVPGC 110 (422)
T ss_pred CHHHHHHHhhCcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHhhCCCc
Confidence 67888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHH---cC-------ceEEEEeeccceEEEEEEeCCce
Q 012484 96 KAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICRE---AN-------VMLIFARSYGLTGFVRISVKEHT 165 (462)
Q Consensus 96 ~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~---~~-------ip~i~~~~~G~~G~v~~~~~~h~ 165 (462)
.|..+.. ++.+...+|+++|++||+..|+.+.|.+||....+ .| +|+|++|+.|+.|.+++..|+.+
T Consensus 111 ~v~~h~~---kIqd~~~~FYk~F~~iicGLDsIeaRRwIN~mL~~l~~~g~~d~~~iiPlIDGGtEG~KG~arvI~Pg~T 187 (422)
T KOG2015|consen 111 VVVPHRQ---KIQDKPISFYKRFDLIICGLDSIEARRWINGMLVRLKLEGNYDISSIIPLIDGGTEGFKGHARVIYPGIT 187 (422)
T ss_pred EEeeeec---chhcCCHHHHhhhceEEecccchhHHHHHHHHHHHHHhccCCCccceeeeeecCcccccceeEEEecCcc
Confidence 8776554 45555788999999999999999999999986543 22 69999999999999999999963
No 41
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=99.92 E-value=4e-25 Score=218.93 Aligned_cols=142 Identities=13% Similarity=0.146 Sum_probs=130.4
Q ss_pred cchhhhHHhh---cC-HHHHHHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccH
Q 012484 5 KTKYDRQLRI---WG-EQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESK 80 (462)
Q Consensus 5 ~~rYdRQl~l---~G-~~~q~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~K 80 (462)
.+||+||+.+ || .++|++|++++|+ |||+|+.++..|+. |||+++|+|+|.|+.+||+ ++++++|+|++|
T Consensus 52 ~~ry~r~l~l~~~~~~~~~Q~kL~~s~Vl---~GGLGs~va~~La~-GVg~L~ivD~D~Ve~SNL~--~L~~~~diG~~K 125 (318)
T TIGR03603 52 LITIIDNLTLKPMLIVEDYQKHLKKSKVL---LGKFGANIAYNLCN-NVGALFISDKTYFQETAEI--DLYSKEFILKKD 125 (318)
T ss_pred HHHHHHHhcCccccCcHHHHHHHhhCeee---cccchHHHHHHHhC-CCCEEEEEcCCEechhhHH--HHhChhhcCcHH
Confidence 3799999999 56 5589999999999 99999999999999 9999999999999999999 899999999999
Q ss_pred HHHHHHHHHHhCCCCeEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHH--HHHHHHHcCceEEEEeeccceEEEE
Q 012484 81 AKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIK--LDRICREANVMLIFARSYGLTGFVR 158 (462)
Q Consensus 81 a~~~~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~--l~~~~~~~~ip~i~~~~~G~~G~v~ 158 (462)
+++++++|.++||.++++.+. ++++++|+||+|.|+...+.. +|++|.++++|+|.++..|+.|++.
T Consensus 126 ~~~a~~~L~~lnp~v~i~~~~-----------~li~~~DlVid~tDn~~~r~L~~iN~ac~~~~~PlV~gav~g~~Gqv~ 194 (318)
T TIGR03603 126 IRDLTSNLDALELTKNVDELK-----------DLLKDYNYIIICTEHSNISLLRGLNKLSKETKKPNTIAFIDGPFVFIT 194 (318)
T ss_pred HHHHHHHHHHhCCCCEEeeHH-----------HHhCCCCEEEECCCCccHhHHHHHHHHHHHHCCCEEEEEEccCEEEEE
Confidence 999999999999999976532 357789999999999998755 9999999999999999999999999
Q ss_pred EEeCC
Q 012484 159 ISVKE 163 (462)
Q Consensus 159 ~~~~~ 163 (462)
+.+|+
T Consensus 195 ~~~P~ 199 (318)
T TIGR03603 195 CTLPP 199 (318)
T ss_pred EEeCC
Confidence 87765
No 42
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.92 E-value=8.7e-25 Score=199.02 Aligned_cols=132 Identities=22% Similarity=0.184 Sum_probs=116.0
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEecChhh
Q 012484 27 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEA 106 (462)
Q Consensus 27 ~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~ 106 (462)
+|+|+|+||+|++++++|+++|+++++|+|.|.|+.+||+||++ ..+++|++|+++++++|+++||+++++.+......
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~-~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~ 79 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQY-FLSQIGEPKVEALKENLREINPFVKIEAINIKIDE 79 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccc-cHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh
Confidence 69999999999999999999999999999999999999999985 46899999999999999999999999887654322
Q ss_pred hhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHc-CceEEEEeeccceEEEEEEe
Q 012484 107 LIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREA-NVMLIFARSYGLTGFVRISV 161 (462)
Q Consensus 107 ~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~-~ip~i~~~~~G~~G~v~~~~ 161 (462)
++..++++++|+||.|.++...+..+++.|.++ ++|+|.+...|.+|++.+..
T Consensus 80 --~~~~~~l~~~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~~~~~~~~~~~~~~~ 133 (174)
T cd01487 80 --NNLEGLFGDCDIVVEAFDNAETKAMLAESLLGNKNKPVVCASGMAGFGDSNNIK 133 (174)
T ss_pred --hhHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEehhhccCCeEEEE
Confidence 112467899999999999999988787777776 99999999999999887654
No 43
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=99.92 E-value=1.3e-24 Score=227.19 Aligned_cols=150 Identities=17% Similarity=0.181 Sum_probs=131.1
Q ss_pred hhcCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccc---cccHHHHHHHHHH
Q 012484 13 RIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCV---GESKAKSVCAFLQ 89 (462)
Q Consensus 13 ~l~G~~~q~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dv---G~~Ka~~~~~~l~ 89 (462)
|+...-+.++|++++|+|+|+||+||.+|++|+++|||+|||+|+|.|+.+||+||++++.+|+ |++||++++++|+
T Consensus 326 RllP~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk 405 (664)
T TIGR01381 326 RLHPDLQLERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALK 405 (664)
T ss_pred hcCChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHH
Confidence 3344555689999999999999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HhCCCCeEEEEecCh----hhhhc-----------CCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEeeccce
Q 012484 90 ELNDAVKAKFIEEYP----EALIE-----------MNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLT 154 (462)
Q Consensus 90 ~lNp~v~v~~~~~~~----~~~~~-----------~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~ 154 (462)
++||.|+++.+.... ..+.+ +..++++++|+|+.+.|+.+.|..++.+|..+++|+|++ ..|+.
T Consensus 406 ~InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l~~Li~~~DvV~d~tDn~esR~L~n~~c~~~~kplI~a-AlGfd 484 (664)
T TIGR01381 406 RIFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARLEQLIKDHDVVFLLLDSREARWLPTVLCSRHKKIAISA-ALGFD 484 (664)
T ss_pred HHCCCcEEEEeeeeeccccccCCchhhhhccccHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCCEEEE-Eeccc
Confidence 999999998776431 00111 113467899999999999999999999999999999998 58999
Q ss_pred EEEEEEeCC
Q 012484 155 GFVRISVKE 163 (462)
Q Consensus 155 G~v~~~~~~ 163 (462)
|++.+..|-
T Consensus 485 g~lvmrhG~ 493 (664)
T TIGR01381 485 SYVVMRHGI 493 (664)
T ss_pred eEEEEEecc
Confidence 999997654
No 44
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=99.92 E-value=4.7e-25 Score=212.64 Aligned_cols=136 Identities=17% Similarity=0.194 Sum_probs=120.1
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCccccccccc--ccccHHHHHHHHHHHhCCCCeEEEEecCh
Q 012484 27 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESC--VGESKAKSVCAFLQELNDAVKAKFIEEYP 104 (462)
Q Consensus 27 ~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~d--vG~~Ka~~~~~~l~~lNp~v~v~~~~~~~ 104 (462)
+|+|+|+||+|+++|++|+++|||+|+|+|+|.|+.+||+||++++.+| +|++||++++++|+++||+++++.+....
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I 80 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI 80 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence 6999999999999999999999999999999999999999999999999 99999999999999999999998875321
Q ss_pred ---------hh---h---hcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEeeccceEEEEEEeCC
Q 012484 105 ---------EA---L---IEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRISVKE 163 (462)
Q Consensus 105 ---------~~---~---~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~~~~~ 163 (462)
.+ . .+...++++++|+|+.+.|+.+.|..++.+|+.+++|+|. ...|+.|++....+-
T Consensus 81 pmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tDn~esR~L~~~~~~~~~k~~I~-aalGfdg~lvmrhg~ 153 (307)
T cd01486 81 PMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTDSRESRWLPTLLSAAKNKLVIN-AALGFDSYLVMRHGA 153 (307)
T ss_pred cccccccccccccccccCHHHHHHHHhhCCEEEECCCCHHHHHHHHHHHHHhCCcEEE-EEeccceEEEEEeCC
Confidence 00 0 0011356789999999999999999999999999999998 588999999987653
No 45
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=5.1e-25 Score=229.65 Aligned_cols=160 Identities=26% Similarity=0.379 Sum_probs=148.7
Q ss_pred chhhhHHhhcCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHhCC-----CeEEEEeCCcccccCCCcccccccccccccH
Q 012484 6 TKYDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGI-----GSITVIDGSKVEVGDLGNNFMLDESCVGESK 80 (462)
Q Consensus 6 ~rYdRQl~l~G~~~q~~L~~~~VlivG~g~lG~eiaknLvl~Gv-----~~itlvD~d~v~~~nl~r~f~~~~~dvG~~K 80 (462)
.|||-|++++|..-|++|.+.++.+||+|++|||.+||++++|+ |.|++.|.|.++.+||+|||+|++-|||++|
T Consensus 411 sRYD~qiavfG~~fqeKL~~~~~FlVGaGAIGCE~LKN~am~Gvg~g~~g~ItVTDmD~IEkSNLnRQFLFR~~dVgk~K 490 (1013)
T KOG2012|consen 411 SRYDGQIAVFGAKFQEKLADQKVFLVGAGAIGCELLKNFALMGVGCGNSGKITVTDMDHIEKSNLNRQFLFRPWDVGKPK 490 (1013)
T ss_pred CccccchhhhchHHHHHHhhCcEEEEccchhhHHHHHhhhheeeccCCCCceEEeccchhhhccccceeeccccccCchH
Confidence 69999999999999999999999999999999999999999999 4799999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCeEEEEecChhhhhc--CCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEeeccceEEEE
Q 012484 81 AKSVCAFLQELNDAVKAKFIEEYPEALIE--MNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVR 158 (462)
Q Consensus 81 a~~~~~~l~~lNp~v~v~~~~~~~~~~~~--~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~ 158 (462)
++++++....+||++++.++......-++ -+++||.+.|+|..+.|+.++|..+++-|.-+.+|++.+||.|..|.+.
T Consensus 491 Se~AA~A~~~mNp~l~I~a~~~rvgpeTE~If~D~Ff~~ld~VanALDNVdAR~YvD~RCv~~~kPLLESGTlGTKGntQ 570 (1013)
T KOG2012|consen 491 SEVAAAAARGMNPDLNIIALQNRVGPETEHIFNDEFFENLDGVANALDNVDARRYVDRRCVYYRKPLLESGTLGTKGNTQ 570 (1013)
T ss_pred HHHHHHHHHhcCCCceeeehhhccCcccccccchhHHhhhHHHHHhhcchhhhhhhhhhhhhhccchhhccCcCCcccee
Confidence 99999999999999998887654433333 2568999999999999999999999999999999999999999999999
Q ss_pred EEeCCce
Q 012484 159 ISVKEHT 165 (462)
Q Consensus 159 ~~~~~h~ 165 (462)
+.+|-++
T Consensus 571 VvvPhlT 577 (1013)
T KOG2012|consen 571 VVVPHLT 577 (1013)
T ss_pred EEecccc
Confidence 9998754
No 46
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=99.90 E-value=9.8e-24 Score=196.08 Aligned_cols=143 Identities=24% Similarity=0.288 Sum_probs=118.7
Q ss_pred HHhhcCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHH
Q 012484 11 QLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQE 90 (462)
Q Consensus 11 Ql~l~G~~~q~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~ 90 (462)
+.+-.|.++|++|++++|+|+|+||+|+++|++|+++||++++|+|.|.|+++||+||++ ..+++|++|+++++++|++
T Consensus 7 ~~~~~~~~~q~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~-~~~~iG~~Ka~~~~~~l~~ 85 (200)
T TIGR02354 7 LVARHTPKIVQKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQY-KASQVGEPKTEALKENISE 85 (200)
T ss_pred HHHhcCHHHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccC-ChhhCCCHHHHHHHHHHHH
Confidence 344589999999999999999999999999999999999999999999999999999964 6689999999999999999
Q ss_pred hCCCCeEEEEecChhhhhcCC-cCCCCCCcEEEEcCCChHHHHHHH-HHHHHcCceEEEEeeccceEEEE
Q 012484 91 LNDAVKAKFIEEYPEALIEMN-PPFFSQFTLVVATQLGEEKMIKLD-RICREANVMLIFARSYGLTGFVR 158 (462)
Q Consensus 91 lNp~v~v~~~~~~~~~~~~~~-~~~~~~~dvVi~~~~~~~~~~~l~-~~~~~~~ip~i~~~~~G~~G~v~ 158 (462)
+||+++++.+..... +.+ .+++.++|+||.|.++.+.+..++ ..++.++.+++.+ ..|+.|+.+
T Consensus 86 inp~~~i~~~~~~i~---~~~~~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~~~ii~-~~g~~g~~~ 151 (200)
T TIGR02354 86 INPYTEIEAYDEKIT---EENIDKFFKDADIVCEAFDNAEAKAMLVNAVLEKYKDKYLIA-ASGLAGYDD 151 (200)
T ss_pred HCCCCEEEEeeeeCC---HhHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHcCCCcEEE-EeccccCCC
Confidence 999999888765432 222 356889999999998888877655 4555555544444 367777764
No 47
>PRK06153 hypothetical protein; Provisional
Probab=99.87 E-value=5.8e-22 Score=196.97 Aligned_cols=129 Identities=16% Similarity=0.089 Sum_probs=113.7
Q ss_pred HHHHHHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCccc-ccccccccc--cHHHHHHHHHHHhCC
Q 012484 17 EQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNF-MLDESCVGE--SKAKSVCAFLQELND 93 (462)
Q Consensus 17 ~~~q~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f-~~~~~dvG~--~Ka~~~~~~l~~lNp 93 (462)
.+.|++|++++|+||||||+||.++..|+++||++|+|+|+|.|+++||+||+ +++.+|+|+ +|++++++++.++||
T Consensus 168 ~~~q~kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~ 247 (393)
T PRK06153 168 GALSAKLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRR 247 (393)
T ss_pred HHHHHHHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCC
Confidence 35699999999999999999999999999999999999999999999999998 568999999 999999999999998
Q ss_pred CCeEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEee
Q 012484 94 AVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARS 150 (462)
Q Consensus 94 ~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~ 150 (462)
.+. .+... +.+.+.+.+.++|+||.|.|+.+.+..++++|.++++|+|+++.
T Consensus 248 ~I~--~~~~~---I~~~n~~~L~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~G~ 299 (393)
T PRK06153 248 GIV--PHPEY---IDEDNVDELDGFTFVFVCVDKGSSRKLIVDYLEALGIPFIDVGM 299 (393)
T ss_pred eEE--EEeec---CCHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEeee
Confidence 653 33322 22223346789999999999999999999999999999999874
No 48
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=99.85 E-value=3.1e-21 Score=183.03 Aligned_cols=132 Identities=19% Similarity=0.176 Sum_probs=114.0
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHhCC-----C-----eEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhC
Q 012484 23 LEKASVCLLNCGPTGSETLKNLVLGGI-----G-----SITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELN 92 (462)
Q Consensus 23 L~~~~VlivG~g~lG~eiaknLvl~Gv-----~-----~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lN 92 (462)
-+.++|+|||+||+||+++++|+++|+ | +++|+|+|.|+++||+|| ++.++|||++||+++++++...|
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQ-lf~~~dVG~~Ka~v~~~ri~~~~ 87 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQ-AFYPADVGQNKAIVLVNRLNQAM 87 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcc-cCChhHCCcHHHHHHHHHHHhcc
Confidence 367999999999999999999999973 4 999999999999999999 56678999999999999998888
Q ss_pred CCCeEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHH---cCceEEEEeeccceEEEEEEe
Q 012484 93 DAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICRE---ANVMLIFARSYGLTGFVRISV 161 (462)
Q Consensus 93 p~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~---~~ip~i~~~~~G~~G~v~~~~ 161 (462)
.++++.+...... ..++.++|+||.|.|+.++|..|++.|++ .++|++.+++.+..|++.+-.
T Consensus 88 -~~~i~a~~~~~~~-----~~~~~~~DiVi~avDn~~aR~~l~~~~~~~~~~~~~~ld~Gn~~~~gqv~~g~ 153 (244)
T TIGR03736 88 -GTDWTAHPERVER-----SSTLHRPDIVIGCVDNRAARLAILRAFEGGYSGYAYWLDLGNRADDGQVILGQ 153 (244)
T ss_pred -CceEEEEEeeeCc-----hhhhcCCCEEEECCCCHHHHHHHHHHHHHhcccccceecccCCCCCCcEEEEe
Confidence 7787776643221 23456899999999999999999999988 248999999999999998843
No 49
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=4.3e-20 Score=174.51 Aligned_cols=141 Identities=16% Similarity=0.215 Sum_probs=124.0
Q ss_pred hhhHHhhcCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHH
Q 012484 8 YDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAF 87 (462)
Q Consensus 8 YdRQl~l~G~~~q~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~ 87 (462)
..|.+.++|++||++|+++-|+||||||+||.++..|+|+|+++|.|+|.|.|+.+.|+||...+..|||.||+.+++++
T Consensus 57 LarN~aFfGee~m~kl~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~clkkh 136 (430)
T KOG2018|consen 57 LARNYAFFGEEGMEKLTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCLKKH 136 (430)
T ss_pred HHhHHhhhhhhHHHHhcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHHHHHH
Confidence 34677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCeEEEEecChhhhhcCC-cC-CCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEeec
Q 012484 88 LQELNDAVKAKFIEEYPEALIEMN-PP-FFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSY 151 (462)
Q Consensus 88 l~~lNp~v~v~~~~~~~~~~~~~~-~~-~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~ 151 (462)
++++.|++++.+.... +...+ ++ .+.+-|.|+.|.|+.+....|-++|.++++++|.+...
T Consensus 137 ~skiaPw~eIdar~~l---~~~~s~edll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Viss~Ga 199 (430)
T KOG2018|consen 137 FSKIAPWCEIDARNML---WTSSSEEDLLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVISSTGA 199 (430)
T ss_pred HHhhCccceecHHHhh---cCCCchhhhhcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEeccCc
Confidence 9999999998765432 11112 22 23468999999999999999999999999999986433
No 50
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=99.69 E-value=1.9e-16 Score=147.72 Aligned_cols=159 Identities=21% Similarity=0.301 Sum_probs=133.6
Q ss_pred chhhhHHhh--cC-HHHHHHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHH
Q 012484 6 TKYDRQLRI--WG-EQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAK 82 (462)
Q Consensus 6 ~rYdRQl~l--~G-~~~q~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~ 82 (462)
.-|+|-+.| +| ....++++...|.|||.||+|+-+|..|.|.|||++.|+|.|.|+..|++|- ||+++..|.+|++
T Consensus 60 NPYSRLMALqRMgIV~dYErIR~~aVAiVGvGGVGSV~AeMLTRCGIGkLlLfDYDkVElANMNRL-Ff~P~QaGlsKv~ 138 (422)
T KOG2336|consen 60 NPYSRLMALQRMGIVDDYERIREFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRL-FFQPDQAGLSKVD 138 (422)
T ss_pred ChHHHHHHHHHhcchhhHHHHhhheeEEEecCchhHHHHHHHHhcCcceEEEeecchhhhhccccc-ccCcccccchHHH
Confidence 569998877 55 4667899999999999999999999999999999999999999999999997 6788999999999
Q ss_pred HHHHHHHHhCCCCeEEEEecChhh------hhc--CCcCC--CCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEee--
Q 012484 83 SVCAFLQELNDAVKAKFIEEYPEA------LIE--MNPPF--FSQFTLVVATQLGEEKMIKLDRICREANVMLIFARS-- 150 (462)
Q Consensus 83 ~~~~~l~~lNp~v~v~~~~~~~~~------~~~--~~~~~--~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~-- 150 (462)
++...|.++||+|.+++++.+... +++ .+-.+ -+..|+|+.|.|+.++|..+|..|-+.+.-|+..++
T Consensus 139 AA~~TL~~iNPDV~iE~hn~NITTvenFd~F~~~is~g~~~~gkpvDLVLSCVDNfEARMavN~ACNE~~q~WmESGVSE 218 (422)
T KOG2336|consen 139 AAVQTLAEINPDVVIEVHNYNITTVENFDTFTDRISNGSLCPGKPVDLVLSCVDNFEARMAVNQACNELNQTWMESGVSE 218 (422)
T ss_pred HHHHHHHhcCCCeEEEEeecceeeehhHHHHHHHhhcCCCCCCCcceEEeeehhhHHHHHHHHHHHHHhhhHHHHccCcc
Confidence 999999999999998877654221 111 01111 245899999999999999999999999988887765
Q ss_pred ccceEEEEEEeCCce
Q 012484 151 YGLTGFVRISVKEHT 165 (462)
Q Consensus 151 ~G~~G~v~~~~~~h~ 165 (462)
....|.|.+..|+.+
T Consensus 219 nAVSGHIQ~i~PGet 233 (422)
T KOG2336|consen 219 NAVSGHIQLIVPGET 233 (422)
T ss_pred ccccceeEEecCCcc
Confidence 467899998888743
No 51
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=99.45 E-value=1.6e-13 Score=137.87 Aligned_cols=145 Identities=17% Similarity=0.182 Sum_probs=119.4
Q ss_pred HHHHHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccc---cccHHHHHHHHHHHhCCC
Q 012484 18 QGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCV---GESKAKSVCAFLQELNDA 94 (462)
Q Consensus 18 ~~q~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dv---G~~Ka~~~~~~l~~lNp~ 94 (462)
-..+++.+.+++++|+|.+||.||+||+-.||++||.+|..+|+.+|-.||.+++-+|. |++||++++.+|++++|.
T Consensus 333 LnLd~is~~KcLLLGAGTLGC~VAR~Ll~WGvRhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~rLk~IfP~ 412 (669)
T KOG2337|consen 333 LNLDIISQTKCLLLGAGTLGCNVARNLLGWGVRHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQRLKEIFPS 412 (669)
T ss_pred cchhhhhcceeEEecCcccchHHHHHHHhhccceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHHHHHHhCcc
Confidence 34578999999999999999999999999999999999999999999999999998886 599999999999999998
Q ss_pred CeEEEEecC----hhhhhc-----------CCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEeeccceEEEEE
Q 012484 95 VKAKFIEEY----PEALIE-----------MNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRI 159 (462)
Q Consensus 95 v~v~~~~~~----~~~~~~-----------~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~ 159 (462)
++.+.+... .-.+.+ .-+..+++.|+|+..+|+.+.|..-.-+|-.+++-+|++ ..||..|+..
T Consensus 413 m~atG~~lsIPMpGH~I~e~~~e~~~~D~~~Le~LI~~HDviFLLtDsRESRWLPtll~a~~~KivINa-ALGFDsylVM 491 (669)
T KOG2337|consen 413 MEATGYVLSIPMPGHPIGESLLEQTKKDLKRLEQLIKDHDVIFLLTDSRESRWLPTLLAAAKNKIVINA-ALGFDSYLVM 491 (669)
T ss_pred ccccceEEeccCCCCccchhhHHHHHHHHHHHHHHHhhcceEEEEeccchhhhhHHHHHhhhcceEeee-ecccceeEEE
Confidence 875543211 001111 113467889999999999888887777777777777776 6899999988
Q ss_pred EeCC
Q 012484 160 SVKE 163 (462)
Q Consensus 160 ~~~~ 163 (462)
..|.
T Consensus 492 RHG~ 495 (669)
T KOG2337|consen 492 RHGT 495 (669)
T ss_pred ecCC
Confidence 7765
No 52
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=99.35 E-value=3.4e-12 Score=133.17 Aligned_cols=138 Identities=17% Similarity=0.163 Sum_probs=111.4
Q ss_pred cchhhhHHhhc------CHHHHHHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccc
Q 012484 5 KTKYDRQLRIW------GEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGE 78 (462)
Q Consensus 5 ~~rYdRQl~l~------G~~~q~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~ 78 (462)
.+||..|+..+ |...-++.++++|+|+|+|++|+.++.+|+.+|++.|..+|.|.+ .+|++| ||+
T Consensus 103 lERYaaqI~F~~~fs~s~~~rF~~qR~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v-~SNlnR--------IgE 173 (637)
T TIGR03693 103 LDRYAAQIEFIEADADSGALKFELSRNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAE-EHALDR--------IHE 173 (637)
T ss_pred HHHHHHHHHHHHHhccCchhhhhhhhcccEEEEecCchHHHHHHHHHhcCCCcEEEEecccc-chhhhH--------HHH
Confidence 38999999884 556667779999999999999999999999999999999999999 999998 776
Q ss_pred cHHHHHHHHHHHhCCCCeEEEEecChhhhhcCCcCCCCCCcEEEEcCC--ChHHHHHHHHHHHHcC---ceEEEEeeccc
Q 012484 79 SKAKSVCAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQL--GEEKMIKLDRICREAN---VMLIFARSYGL 153 (462)
Q Consensus 79 ~Ka~~~~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~--~~~~~~~l~~~~~~~~---ip~i~~~~~G~ 153 (462)
. ++.+++ .||.+.++.++.. ..+.-.+.++++|+||+..+ .......+|..|.+.| +|++.++..++
T Consensus 174 l-~e~A~~----~n~~v~v~~i~~~---~~~dl~ev~~~~DiVi~vsDdy~~~~Lr~lN~acvkegk~~IPai~~G~~~l 245 (637)
T TIGR03693 174 L-AEIAEE----TDDALLVQEIDFA---EDQHLHEAFEPADWVLYVSDNGDIDDLHALHAFCKEEGKGFIPAICLKQVGL 245 (637)
T ss_pred H-HHHHHH----hCCCCceEeccCC---cchhHHHhhcCCcEEEEECCCCChHHHHHHHHHHHHcCCCeEEEEEccccee
Confidence 6 555444 9999998887641 11122467899999997765 3456889999999999 67777777777
Q ss_pred eEEEEE
Q 012484 154 TGFVRI 159 (462)
Q Consensus 154 ~G~v~~ 159 (462)
.|-++.
T Consensus 246 iGPlft 251 (637)
T TIGR03693 246 AGPVFQ 251 (637)
T ss_pred ecceEC
Confidence 776665
No 53
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=98.57 E-value=3.4e-07 Score=79.67 Aligned_cols=123 Identities=24% Similarity=0.309 Sum_probs=93.7
Q ss_pred cCcEEEEcCChhHHHHHHHHH---HhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEe
Q 012484 25 KASVCLLNCGPTGSETLKNLV---LGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIE 101 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLv---l~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~ 101 (462)
...|.++|||-+|.-++-+|. +-|+.+|.++|.+.|++.|+- +..-...+|.+|++.++ +|..-.+.-+++.
T Consensus 18 rGeV~l~G~GRLG~Rval~Lle~HRGGperi~v~Dgqrve~dDii--hrr~Ga~~GEyKv~Fi~-rl~~~~f~r~V~a-- 92 (217)
T COG4015 18 RGEVSLIGCGRLGVRVALDLLEVHRGGPERIYVFDGQRVEEDDII--HRRLGAKVGEYKVDFIK-RLGRVHFGRRVEA-- 92 (217)
T ss_pred CceEEEEeccchhHHHHHHHHHHhcCCCeEEEEecCcccCchhhH--HHHhCCCcchhHHHHHH-HhCcCCCCceeec--
Confidence 456999999999999999998 689999999999999999984 22234568999998764 4444556555554
Q ss_pred cChhhhhcCCcCCCCCCcEEEEc---CCChHHHHHHHHHHHHcCceEEEEeeccceEE
Q 012484 102 EYPEALIEMNPPFFSQFTLVVAT---QLGEEKMIKLDRICREANVMLIFARSYGLTGF 156 (462)
Q Consensus 102 ~~~~~~~~~~~~~~~~~dvVi~~---~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~ 156 (462)
.++.++++|...+.+ |+|+.| .+.......|.++|++.|+.-|+ +.|.||+
T Consensus 93 -~pE~it~dNlhll~g-DVvvi~IAGGdT~PvTaaii~ya~~rG~~Tis--T~GVFGi 146 (217)
T COG4015 93 -FPENITKDNLHLLKG-DVVVICIAGGDTIPVTAAIINYAKERGIKTIS--TNGVFGI 146 (217)
T ss_pred -ccccccccchhhhcC-CEEEEEecCCCcchhHHHHHHHHHHcCceEee--cCceeec
Confidence 445566667666766 777643 46667778899999999986554 7788885
No 54
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=97.72 E-value=0.00038 Score=64.97 Aligned_cols=95 Identities=17% Similarity=0.180 Sum_probs=64.4
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEe
Q 012484 22 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIE 101 (462)
Q Consensus 22 ~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~ 101 (462)
.|++.+|+|||.|.+|...++.|...| .++|+++++.. +.+.++-+.-.+....
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs~~~~-------------------------~~l~~l~~~~~i~~~~ 60 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYG-AHIVVISPELT-------------------------ENLVKLVEEGKIRWKQ 60 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEcCCCC-------------------------HHHHHHHhCCCEEEEe
Confidence 378899999999999999999999999 68999975321 1122222211222222
Q ss_pred cChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEe
Q 012484 102 EYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFAR 149 (462)
Q Consensus 102 ~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~ 149 (462)
. .+ ....+.++|+||+++++.+.-..+.+.|. .++++-.+.
T Consensus 61 ~---~~---~~~~l~~adlViaaT~d~elN~~i~~~a~-~~~lvn~~d 101 (202)
T PRK06718 61 K---EF---EPSDIVDAFLVIAATNDPRVNEQVKEDLP-ENALFNVIT 101 (202)
T ss_pred c---CC---ChhhcCCceEEEEcCCCHHHHHHHHHHHH-hCCcEEECC
Confidence 1 11 23346789999999988888888888894 466544443
No 55
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=97.65 E-value=0.0001 Score=64.16 Aligned_cols=78 Identities=15% Similarity=0.218 Sum_probs=55.7
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEe
Q 012484 22 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIE 101 (462)
Q Consensus 22 ~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~ 101 (462)
.+++++|+|+|+||.|..+++.|...|+++++|++.+ ..|++.+++.+ +...+....
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt-------------------~~ra~~l~~~~----~~~~~~~~~ 65 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRT-------------------PERAEALAEEF----GGVNIEAIP 65 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS-------------------HHHHHHHHHHH----TGCSEEEEE
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC-------------------HHHHHHHHHHc----Cccccceee
Confidence 6889999999999999999999999999999998622 13666666555 444444443
Q ss_pred cChhhhhcCCcCCCCCCcEEEEcCCCh
Q 012484 102 EYPEALIEMNPPFFSQFTLVVATQLGE 128 (462)
Q Consensus 102 ~~~~~~~~~~~~~~~~~dvVi~~~~~~ 128 (462)
.. ++ .+.+.++|+||.|+...
T Consensus 66 ~~--~~----~~~~~~~DivI~aT~~~ 86 (135)
T PF01488_consen 66 LE--DL----EEALQEADIVINATPSG 86 (135)
T ss_dssp GG--GH----CHHHHTESEEEE-SSTT
T ss_pred HH--HH----HHHHhhCCeEEEecCCC
Confidence 21 11 13456899999877543
No 56
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=97.55 E-value=0.00081 Score=62.90 Aligned_cols=105 Identities=18% Similarity=0.206 Sum_probs=72.9
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEec
Q 012484 23 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE 102 (462)
Q Consensus 23 L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~ 102 (462)
|++.+|+|||.|.+|..-++.|...|. ++|+++++.- ..+ ..+.+.. +++.+..
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~---------------------~~l-~~l~~~~---~i~~~~~ 60 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELE---------------------SEL-TLLAEQG---GITWLAR 60 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCC---------------------HHH-HHHHHcC---CEEEEeC
Confidence 678999999999999999999999996 7999986432 001 1122221 3444432
Q ss_pred ChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEeeccceEEEEE
Q 012484 103 YPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRI 159 (462)
Q Consensus 103 ~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~ 159 (462)
.. ....+.++++||++++..+....+...|++.++++-.++.-....+++.
T Consensus 61 ~~------~~~dl~~~~lVi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~f~~p 111 (205)
T TIGR01470 61 CF------DADILEGAFLVIAATDDEELNRRVAHAARARGVPVNVVDDPELCSFIFP 111 (205)
T ss_pred CC------CHHHhCCcEEEEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCeEEEe
Confidence 21 1234678999999888877778899999999999766655554444443
No 57
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=97.55 E-value=0.00028 Score=69.49 Aligned_cols=76 Identities=18% Similarity=0.192 Sum_probs=58.3
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEec
Q 012484 23 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE 102 (462)
Q Consensus 23 L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~ 102 (462)
++.++|+|+|+||+|..++..|+..|+++++|+|.+ ..|++.+++.+.+.++.+.+....
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~-------------------~~ka~~la~~l~~~~~~~~~~~~~- 184 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD-------------------PARAAALADELNARFPAARATAGS- 184 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC-------------------HHHHHHHHHHHHhhCCCeEEEecc-
Confidence 566799999999999999999999999999999854 258888888888777765432211
Q ss_pred ChhhhhcCCcCCCCCCcEEEEcC
Q 012484 103 YPEALIEMNPPFFSQFTLVVATQ 125 (462)
Q Consensus 103 ~~~~~~~~~~~~~~~~dvVi~~~ 125 (462)
.+ .+.+.++|+||.|+
T Consensus 185 ---~~----~~~~~~aDiVInaT 200 (284)
T PRK12549 185 ---DL----AAALAAADGLVHAT 200 (284)
T ss_pred ---ch----HhhhCCCCEEEECC
Confidence 11 12346799999876
No 58
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.49 E-value=0.00033 Score=71.19 Aligned_cols=98 Identities=21% Similarity=0.322 Sum_probs=66.6
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhC-CCCeEEEEecCh
Q 012484 26 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELN-DAVKAKFIEEYP 104 (462)
Q Consensus 26 ~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lN-p~v~v~~~~~~~ 104 (462)
.+|+|+|+|++|+-+|.+|+..|.+.|++.|... ..++++.+.. +.++...++..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~-----------------------~~~~~i~~~~~~~v~~~~vD~~- 57 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK-----------------------EKCARIAELIGGKVEALQVDAA- 57 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH-----------------------HHHHHHHhhccccceeEEeccc-
Confidence 5799999999999999999999999999998322 1122333222 23333333221
Q ss_pred hhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEee
Q 012484 105 EALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARS 150 (462)
Q Consensus 105 ~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~ 150 (462)
+. +...+.++++|+||.+..+.-. ..+-+.|-+.++++++...
T Consensus 58 -d~-~al~~li~~~d~VIn~~p~~~~-~~i~ka~i~~gv~yvDts~ 100 (389)
T COG1748 58 -DV-DALVALIKDFDLVINAAPPFVD-LTILKACIKTGVDYVDTSY 100 (389)
T ss_pred -Ch-HHHHHHHhcCCEEEEeCCchhh-HHHHHHHHHhCCCEEEccc
Confidence 11 0112567888999988876444 3788899999999888654
No 59
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=97.28 E-value=0.0038 Score=55.80 Aligned_cols=86 Identities=13% Similarity=0.160 Sum_probs=60.9
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEe
Q 012484 22 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIE 101 (462)
Q Consensus 22 ~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~ 101 (462)
.|++.+|+|||.|.+|...++.|...|. ++++++++.. +.+.++. .+. +..
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIsp~~~-------------------------~~l~~l~-~i~--~~~ 60 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVSPEIC-------------------------KEMKELP-YIT--WKQ 60 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCccC-------------------------HHHHhcc-CcE--EEe
Confidence 4788999999999999999999999997 6889875532 1122221 222 221
Q ss_pred cChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcC
Q 012484 102 EYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREAN 142 (462)
Q Consensus 102 ~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ 142 (462)
..+ .+..+.++|+||+++++.+.-..+...|++++
T Consensus 61 ---~~~---~~~dl~~a~lViaaT~d~e~N~~i~~~a~~~~ 95 (157)
T PRK06719 61 ---KTF---SNDDIKDAHLIYAATNQHAVNMMVKQAAHDFQ 95 (157)
T ss_pred ---ccc---ChhcCCCceEEEECCCCHHHHHHHHHHHHHCC
Confidence 111 23346789999999988888888888888753
No 60
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=97.19 E-value=0.0013 Score=54.41 Aligned_cols=88 Identities=18% Similarity=0.206 Sum_probs=62.2
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEe
Q 012484 22 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIE 101 (462)
Q Consensus 22 ~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~ 101 (462)
.|++.+|+|||.|.+|..-++.|..+| .++|++.++. +. .+ ..++. ..
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~g-A~v~vis~~~-~~-------------------------~~---~~i~~--~~ 51 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAG-AKVTVISPEI-EF-------------------------SE---GLIQL--IR 51 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCT-BEEEEEESSE-HH-------------------------HH---TSCEE--EE
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEECCch-hh-------------------------hh---hHHHH--Hh
Confidence 478899999999999999999999999 6899998665 00 00 22222 12
Q ss_pred cChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEE
Q 012484 102 EYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFA 148 (462)
Q Consensus 102 ~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~ 148 (462)
.. + .+.+.++++|++++++......+.+.|+++++|+-.+
T Consensus 52 ~~---~----~~~l~~~~lV~~at~d~~~n~~i~~~a~~~~i~vn~~ 91 (103)
T PF13241_consen 52 RE---F----EEDLDGADLVFAATDDPELNEAIYADARARGILVNVV 91 (103)
T ss_dssp SS--------GGGCTTESEEEE-SS-HHHHHHHHHHHHHTTSEEEET
T ss_pred hh---H----HHHHhhheEEEecCCCHHHHHHHHHHHhhCCEEEEEC
Confidence 11 1 1236789999999988888889999999999985554
No 61
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=97.08 E-value=0.0073 Score=57.00 Aligned_cols=98 Identities=16% Similarity=0.181 Sum_probs=69.7
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHh--CCCCeEEE
Q 012484 22 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQEL--NDAVKAKF 99 (462)
Q Consensus 22 ~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~l--Np~v~v~~ 99 (462)
.+++.+|+|||.|.+|..=++.|...| .++|++-++.. ..+.++ ++. +++
T Consensus 22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~g-A~VtVVap~i~-------------------------~el~~l~~~~~--i~~ 73 (223)
T PRK05562 22 LSNKIKVLIIGGGKAAFIKGKTFLKKG-CYVYILSKKFS-------------------------KEFLDLKKYGN--LKL 73 (223)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEEcCCCC-------------------------HHHHHHHhCCC--EEE
Confidence 456789999999999999999999999 46999865532 111111 233 333
Q ss_pred EecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEeeccc
Q 012484 100 IEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGL 153 (462)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~ 153 (462)
+... + .++.+.++++||+++++.+.-..+...|+..++++..+..-..
T Consensus 74 ~~r~---~---~~~dl~g~~LViaATdD~~vN~~I~~~a~~~~~lvn~vd~p~~ 121 (223)
T PRK05562 74 IKGN---Y---DKEFIKDKHLIVIATDDEKLNNKIRKHCDRLYKLYIDCSDYKK 121 (223)
T ss_pred EeCC---C---ChHHhCCCcEEEECCCCHHHHHHHHHHHHHcCCeEEEcCCccc
Confidence 3322 1 2334678999999999888888999999999998776654443
No 62
>PRK04148 hypothetical protein; Provisional
Probab=96.63 E-value=0.012 Score=51.00 Aligned_cols=94 Identities=17% Similarity=0.208 Sum_probs=68.6
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEecC
Q 012484 24 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY 103 (462)
Q Consensus 24 ~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~~ 103 (462)
++.+|++||+| .|..+|..|...|. .++-+|-+. ..++ ..++. .+ +++.
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~-------------------~aV~----~a~~~--~~--~~v~-- 64 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINE-------------------KAVE----KAKKL--GL--NAFV-- 64 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCH-------------------HHHH----HHHHh--CC--eEEE--
Confidence 34689999999 99999999999996 788888322 1222 22222 12 2222
Q ss_pred hhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEe
Q 012484 104 PEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFAR 149 (462)
Q Consensus 104 ~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~ 149 (462)
.++.+.+.++..++|+|..+..+.+....+-+.+++.+.+++..-
T Consensus 65 -dDlf~p~~~~y~~a~liysirpp~el~~~~~~la~~~~~~~~i~~ 109 (134)
T PRK04148 65 -DDLFNPNLEIYKNAKLIYSIRPPRDLQPFILELAKKINVPLIIKP 109 (134)
T ss_pred -CcCCCCCHHHHhcCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 234445667788999999999999999999999999999877644
No 63
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.59 E-value=0.018 Score=54.70 Aligned_cols=99 Identities=18% Similarity=0.209 Sum_probs=59.0
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEecChh
Q 012484 26 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPE 105 (462)
Q Consensus 26 ~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~~~~ 105 (462)
.+++|+|+|-+|..+|++|...|-. ++++|.|.- .+.+.+.+- ..+.+...+....
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~-Vv~Id~d~~----------------------~~~~~~~~~-~~~~~v~gd~t~~ 56 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHN-VVLIDRDEE----------------------RVEEFLADE-LDTHVVIGDATDE 56 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCc-eEEEEcCHH----------------------HHHHHhhhh-cceEEEEecCCCH
Confidence 3789999999999999999999986 666664331 111112211 1222222221111
Q ss_pred hhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHH-cCceEEEEee
Q 012484 106 ALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICRE-ANVMLIFARS 150 (462)
Q Consensus 106 ~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~-~~ip~i~~~~ 150 (462)
+.+ ...-+.++|++|+++.+...-..+...+.+ +|+|-+.+.+
T Consensus 57 ~~L--~~agi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~ 100 (225)
T COG0569 57 DVL--EEAGIDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARA 100 (225)
T ss_pred HHH--HhcCCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEe
Confidence 111 112366899999887775665555555555 7899777654
No 64
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=96.43 E-value=0.0046 Score=63.32 Aligned_cols=75 Identities=19% Similarity=0.269 Sum_probs=55.0
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEe
Q 012484 22 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIE 101 (462)
Q Consensus 22 ~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~ 101 (462)
.|..++|+|||+|-+|.-+|++|...|+..++|+. |+ .-||+.+++.+. ..+..++
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaN----------RT---------~erA~~La~~~~-----~~~~~l~ 230 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIAN----------RT---------LERAEELAKKLG-----AEAVALE 230 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEc----------CC---------HHHHHHHHHHhC-----CeeecHH
Confidence 37889999999999999999999999999999973 33 136776666665 2222111
Q ss_pred cChhhhhcCCcCCCCCCcEEEEcCCCh
Q 012484 102 EYPEALIEMNPPFFSQFTLVVATQLGE 128 (462)
Q Consensus 102 ~~~~~~~~~~~~~~~~~dvVi~~~~~~ 128 (462)
...+++.++|+||.++...
T Consensus 231 --------el~~~l~~~DvVissTsa~ 249 (414)
T COG0373 231 --------ELLEALAEADVVISSTSAP 249 (414)
T ss_pred --------HHHHhhhhCCEEEEecCCC
Confidence 1235678999999776543
No 65
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.42 E-value=0.0076 Score=61.95 Aligned_cols=95 Identities=23% Similarity=0.216 Sum_probs=60.2
Q ss_pred EEEEcCChhHHHHHHHHHHhCCC-eEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEecChhh
Q 012484 28 VCLLNCGPTGSETLKNLVLGGIG-SITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEA 106 (462)
Q Consensus 28 VlivG~g~lG~eiaknLvl~Gv~-~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~ 106 (462)
|+|+|+|.+|+.+++.|+..+-. ++++.|.+. .|++.+++.+ ..+.++...++. .+
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~-------------------~~~~~~~~~~--~~~~~~~~~~d~--~~ 57 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNP-------------------EKAERLAEKL--LGDRVEAVQVDV--ND 57 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSH-------------------HHHHHHHT----TTTTEEEEE--T--TT
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCH-------------------HHHHHHHhhc--cccceeEEEEec--CC
Confidence 78999999999999999999865 999987332 2343333332 333444333332 21
Q ss_pred hhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEE
Q 012484 107 LIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIF 147 (462)
Q Consensus 107 ~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~ 147 (462)
..+ -..+++++|+||.|..+. ....+.+.|.+.++++|+
T Consensus 58 ~~~-l~~~~~~~dvVin~~gp~-~~~~v~~~~i~~g~~yvD 96 (386)
T PF03435_consen 58 PES-LAELLRGCDVVINCAGPF-FGEPVARACIEAGVHYVD 96 (386)
T ss_dssp HHH-HHHHHTTSSEEEE-SSGG-GHHHHHHHHHHHT-EEEE
T ss_pred HHH-HHHHHhcCCEEEECCccc-hhHHHHHHHHHhCCCeec
Confidence 110 134678999999988765 566788999999999888
No 66
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=96.40 E-value=0.0079 Score=59.18 Aligned_cols=77 Identities=17% Similarity=0.139 Sum_probs=52.2
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEec
Q 012484 23 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE 102 (462)
Q Consensus 23 L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~ 102 (462)
++.++|+|+|+||.|..++..|...|+++++|++.+ ..|++.+++.+.... . +..+..
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt-------------------~~ka~~La~~~~~~~-~--~~~~~~ 180 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRN-------------------PDKLSRLVDLGVQVG-V--ITRLEG 180 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC-------------------HHHHHHHHHHhhhcC-c--ceeccc
Confidence 467899999999999999999999999999999632 136777766654321 1 111110
Q ss_pred ChhhhhcCCcCCCCCCcEEEEcCC
Q 012484 103 YPEALIEMNPPFFSQFTLVVATQL 126 (462)
Q Consensus 103 ~~~~~~~~~~~~~~~~dvVi~~~~ 126 (462)
..++ ...+.++|+||.|+.
T Consensus 181 -~~~~----~~~~~~~DiVInaTp 199 (282)
T TIGR01809 181 -DSGG----LAIEKAAEVLVSTVP 199 (282)
T ss_pred -hhhh----hhcccCCCEEEECCC
Confidence 0111 123467999998764
No 67
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=96.37 E-value=0.009 Score=58.73 Aligned_cols=79 Identities=16% Similarity=0.192 Sum_probs=53.1
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEec
Q 012484 23 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE 102 (462)
Q Consensus 23 L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~ 102 (462)
+++++|+|+|+||.|..++-.|+..|+.+++|+|.+. .|++.+++.+.+..+...+....
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~-------------------~ka~~La~~~~~~~~~~~~~~~~- 184 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDT-------------------SRAQALADVINNAVGREAVVGVD- 184 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH-------------------HHHHHHHHHHhhccCcceEEecC-
Confidence 4567899999999999999999999999999997432 37777777765443432222211
Q ss_pred ChhhhhcCCcCCCCCCcEEEEcCC
Q 012484 103 YPEALIEMNPPFFSQFTLVVATQL 126 (462)
Q Consensus 103 ~~~~~~~~~~~~~~~~dvVi~~~~ 126 (462)
...+ ...+..+|+||.|+.
T Consensus 185 -~~~~----~~~~~~~divINaTp 203 (283)
T PRK14027 185 -ARGI----EDVIAAADGVVNATP 203 (283)
T ss_pred -HhHH----HHHHhhcCEEEEcCC
Confidence 1110 112346889887763
No 68
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=96.30 E-value=0.016 Score=57.22 Aligned_cols=84 Identities=10% Similarity=0.084 Sum_probs=54.0
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEec
Q 012484 23 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE 102 (462)
Q Consensus 23 L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~ 102 (462)
+++++|+|+|+||+|..++..|+..|+.+++|++.+.- ...|++.+++.+.+..+.+.+...+.
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~~----------------~~~~a~~l~~~l~~~~~~~~~~~~d~ 187 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKDD----------------FYERAEQTAEKIKQEVPECIVNVYDL 187 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCch----------------HHHHHHHHHHHHhhcCCCceeEEech
Confidence 55788999999999999999999999999999874210 01366666666665555544433221
Q ss_pred ChhhhhcCCcCCCCCCcEEEEcC
Q 012484 103 YPEALIEMNPPFFSQFTLVVATQ 125 (462)
Q Consensus 103 ~~~~~~~~~~~~~~~~dvVi~~~ 125 (462)
. +. +.-...+..+|+||.|+
T Consensus 188 ~--~~-~~~~~~~~~~DilINaT 207 (289)
T PRK12548 188 N--DT-EKLKAEIASSDILVNAT 207 (289)
T ss_pred h--hh-hHHHhhhccCCEEEEeC
Confidence 1 10 00012345678888665
No 69
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=96.25 E-value=0.015 Score=56.89 Aligned_cols=75 Identities=20% Similarity=0.270 Sum_probs=54.3
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEecC
Q 012484 24 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY 103 (462)
Q Consensus 24 ~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~~ 103 (462)
+..+|+|+|+||.+..|+..|...|+.+|+|++.+ ..|++.+++.+.+..+.+......
T Consensus 125 ~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt-------------------~~ra~~La~~~~~~~~~~~~~~~~-- 183 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFALAEAGAKRITVVNRT-------------------RERAEELADLFGELGAAVEAAALA-- 183 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCC-------------------HHHHHHHHHHhhhccccccccccc--
Confidence 45889999999999999999999999999998522 247888888888877633322111
Q ss_pred hhhhhcCCcCCCCCCcEEEEcCC
Q 012484 104 PEALIEMNPPFFSQFTLVVATQL 126 (462)
Q Consensus 104 ~~~~~~~~~~~~~~~dvVi~~~~ 126 (462)
. .+...++|+||.|+.
T Consensus 184 --~-----~~~~~~~dliINaTp 199 (283)
T COG0169 184 --D-----LEGLEEADLLINATP 199 (283)
T ss_pred --c-----cccccccCEEEECCC
Confidence 0 111116899997764
No 70
>PRK10637 cysG siroheme synthase; Provisional
Probab=96.16 E-value=0.044 Score=57.68 Aligned_cols=106 Identities=12% Similarity=0.138 Sum_probs=73.4
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEe
Q 012484 22 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIE 101 (462)
Q Consensus 22 ~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~ 101 (462)
.|++.+|+|||.|.++..=++.|..+|. ++|++-++.- ..+.++-..-+++.+.
T Consensus 9 ~l~~~~vlvvGgG~vA~rk~~~ll~~ga-~v~visp~~~-------------------------~~~~~l~~~~~i~~~~ 62 (457)
T PRK10637 9 QLRDRDCLLVGGGDVAERKARLLLDAGA-RLTVNALAFI-------------------------PQFTAWADAGMLTLVE 62 (457)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCCC-------------------------HHHHHHHhCCCEEEEe
Confidence 4789999999999999999999999996 6999854321 1122221122233333
Q ss_pred cChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEeeccceEEEEE
Q 012484 102 EYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRI 159 (462)
Q Consensus 102 ~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~ 159 (462)
.. + ..+.+.++++||+++++.+.-..+.+.|+..++++-.+..-....+++-
T Consensus 63 ~~---~---~~~dl~~~~lv~~at~d~~~n~~i~~~a~~~~~lvN~~d~~~~~~f~~p 114 (457)
T PRK10637 63 GP---F---DESLLDTCWLAIAATDDDAVNQRVSEAAEARRIFCNVVDAPKAASFIMP 114 (457)
T ss_pred CC---C---ChHHhCCCEEEEECCCCHHHhHHHHHHHHHcCcEEEECCCcccCeEEEe
Confidence 22 1 2345678999999998888888999999999998666665444444443
No 71
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=96.06 E-value=0.02 Score=56.24 Aligned_cols=74 Identities=15% Similarity=0.299 Sum_probs=51.5
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEec
Q 012484 23 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE 102 (462)
Q Consensus 23 L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~ 102 (462)
+.+++|+|+|+||+|..+++.|...|+.++++++.+ ..|++.+++.+....+ +.+ ..
T Consensus 121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~-------------------~~~a~~l~~~~~~~~~-~~~---~~ 177 (278)
T PRK00258 121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRT-------------------VERAEELAKLFGALGK-AEL---DL 177 (278)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCC-------------------HHHHHHHHHHhhhccc-eee---cc
Confidence 567899999999999999999999999999999742 1256656555543321 121 10
Q ss_pred ChhhhhcCCcCCCCCCcEEEEcCC
Q 012484 103 YPEALIEMNPPFFSQFTLVVATQL 126 (462)
Q Consensus 103 ~~~~~~~~~~~~~~~~dvVi~~~~ 126 (462)
...+.+.++|+||+|+.
T Consensus 178 -------~~~~~~~~~DivInaTp 194 (278)
T PRK00258 178 -------ELQEELADFDLIINATS 194 (278)
T ss_pred -------cchhccccCCEEEECCc
Confidence 01234568999998764
No 72
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=96.02 E-value=0.042 Score=50.90 Aligned_cols=84 Identities=14% Similarity=0.234 Sum_probs=68.6
Q ss_pred CHHHHHHHhcCcEEEEcCChhHHH-HHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCC
Q 012484 16 GEQGQAALEKASVCLLNCGPTGSE-TLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDA 94 (462)
Q Consensus 16 G~~~q~~L~~~~VlivG~g~lG~e-iaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~ 94 (462)
+.+.+++|++++|.|+|.|+.|+. ++..|..+|++.+.
T Consensus 96 ~~~a~~~l~~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~----------------------------------------- 134 (193)
T TIGR03882 96 PAAALERLRQLTVTVLSFGEGGAAALAAALAAAGIRIAP----------------------------------------- 134 (193)
T ss_pred HHHHHHHHhcCcEEEEecCCCcHHHHHHHHHHcCCCccC-----------------------------------------
Confidence 567889999999999999999988 99999999998654
Q ss_pred CeEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEeeccceEEEEE
Q 012484 95 VKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTGFVRI 159 (462)
Q Consensus 95 v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~ 159 (462)
. . .+.++|++.+........+|+.+.+.+.|++.+...|..+.+--
T Consensus 135 ------~-~------------a~l~vVl~~Dyl~p~L~~~n~~~l~~~~~~l~v~~~~~~~~~gp 180 (193)
T TIGR03882 135 ------S-E------------ADLTVVLTDDYLDPELAAINQRALAAGRPWLLVKPGGVQPWIGP 180 (193)
T ss_pred ------C-C------------CCEEEEEeCCCCChHHHHHHHHHHHcCCceEEEEeCCceEEECC
Confidence 0 0 02446666666666788899999999999999999988887754
No 73
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=95.96 E-value=0.01 Score=53.28 Aligned_cols=117 Identities=19% Similarity=0.177 Sum_probs=64.7
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEecC--
Q 012484 26 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY-- 103 (462)
Q Consensus 26 ~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~~-- 103 (462)
.+|.+||+|..|+.+++||...|.. ++++|.+.-....+... |-..++...+...+. ++-+..+...
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~-v~~~d~~~~~~~~~~~~--------g~~~~~s~~e~~~~~--dvvi~~v~~~~~ 70 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYE-VTVYDRSPEKAEALAEA--------GAEVADSPAEAAEQA--DVVILCVPDDDA 70 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTE-EEEEESSHHHHHHHHHT--------TEEEESSHHHHHHHB--SEEEE-SSSHHH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCe-EEeeccchhhhhhhHHh--------hhhhhhhhhhHhhcc--cceEeecccchh
Confidence 4799999999999999999999984 88888443111111100 111111122222222 3333333221
Q ss_pred hhhhhcCC--cCCCCCCcEEEE-cCCChHHHHHHHHHHHHcCceEEEEeeccc
Q 012484 104 PEALIEMN--PPFFSQFTLVVA-TQLGEEKMIKLDRICREANVMLIFARSYGL 153 (462)
Q Consensus 104 ~~~~~~~~--~~~~~~~dvVi~-~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~ 153 (462)
...+.... ...+..=++||. ++.+.+....+.+.+..+|+.+|++...|-
T Consensus 71 v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg 123 (163)
T PF03446_consen 71 VEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGG 123 (163)
T ss_dssp HHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESH
T ss_pred hhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecc
Confidence 11222221 122344556664 456677788999999999999999988764
No 74
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=95.93 E-value=0.029 Score=49.22 Aligned_cols=73 Identities=22% Similarity=0.246 Sum_probs=50.2
Q ss_pred cEEEEcC-ChhHHHHHHHHHHhCCCe-EEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCC--eEEEEec
Q 012484 27 SVCLLNC-GPTGSETLKNLVLGGIGS-ITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAV--KAKFIEE 102 (462)
Q Consensus 27 ~VlivG~-g~lG~eiaknLvl~Gv~~-itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v--~v~~~~~ 102 (462)
||+|||+ |.+|+.++-.|+..|+.+ +.|+|.+ ..|++..+.-|....+.. .+....
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~-------------------~~~~~g~a~Dl~~~~~~~~~~~~i~~- 61 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDIN-------------------EDKAEGEALDLSHASAPLPSPVRITS- 61 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESS-------------------HHHHHHHHHHHHHHHHGSTEEEEEEE-
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccC-------------------cccceeeehhhhhhhhhccccccccc-
Confidence 7999999 999999999999999965 9999832 225555555555543322 222222
Q ss_pred ChhhhhcCCcCCCCCCcEEEEcCC
Q 012484 103 YPEALIEMNPPFFSQFTLVVATQL 126 (462)
Q Consensus 103 ~~~~~~~~~~~~~~~~dvVi~~~~ 126 (462)
...+-+++.|+||.+..
T Consensus 62 -------~~~~~~~~aDivvitag 78 (141)
T PF00056_consen 62 -------GDYEALKDADIVVITAG 78 (141)
T ss_dssp -------SSGGGGTTESEEEETTS
T ss_pred -------ccccccccccEEEEecc
Confidence 13345779999998753
No 75
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=95.89 E-value=0.012 Score=61.03 Aligned_cols=35 Identities=14% Similarity=0.278 Sum_probs=32.6
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEe
Q 012484 22 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVID 56 (462)
Q Consensus 22 ~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD 56 (462)
.+.+++|+|+|+|+.|..++++|...|+.+|+|+.
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~n 212 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLAN 212 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEC
Confidence 46789999999999999999999999999999985
No 76
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=95.81 E-value=0.04 Score=54.31 Aligned_cols=83 Identities=11% Similarity=0.111 Sum_probs=53.0
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEec
Q 012484 23 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE 102 (462)
Q Consensus 23 L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~ 102 (462)
+++++|+|+|+||.+..|+-.|+..|+++++|++.+.- ...|++.+++.+....+ ..+.....
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~----------------~~~ka~~la~~~~~~~~-~~~~~~~~ 184 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE----------------FFDKALAFAQRVNENTD-CVVTVTDL 184 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc----------------HHHHHHHHHHHhhhccC-ceEEEech
Confidence 46679999999999999999999999999999973210 12477777776654322 22222211
Q ss_pred ChhhhhcCCcCCCCCCcEEEEcC
Q 012484 103 YPEALIEMNPPFFSQFTLVVATQ 125 (462)
Q Consensus 103 ~~~~~~~~~~~~~~~~dvVi~~~ 125 (462)
+.. ..-.+.+.++|+||.|+
T Consensus 185 --~~~-~~l~~~~~~aDivINaT 204 (288)
T PRK12749 185 --ADQ-QAFAEALASADILTNGT 204 (288)
T ss_pred --hhh-hhhhhhcccCCEEEECC
Confidence 000 00011245789998776
No 77
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=95.78 E-value=0.044 Score=51.35 Aligned_cols=100 Identities=22% Similarity=0.278 Sum_probs=67.9
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEe
Q 012484 22 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIE 101 (462)
Q Consensus 22 ~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~ 101 (462)
.|.+++|+|||.|.+|..=++.|..+|.. ++++-++. + .. + ..+.+-++ +..+.
T Consensus 9 ~l~~k~VlvvGgG~va~rKa~~ll~~ga~-v~Vvs~~~-~-~e-------------------l-~~~~~~~~---i~~~~ 62 (210)
T COG1648 9 DLEGKKVLVVGGGSVALRKARLLLKAGAD-VTVVSPEF-E-PE-------------------L-KALIEEGK---IKWIE 62 (210)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhcCCE-EEEEcCCc-c-HH-------------------H-HHHHHhcC---cchhh
Confidence 46789999999999999999999999985 77765444 1 11 1 12222222 22221
Q ss_pred cChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEeeccc
Q 012484 102 EYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGL 153 (462)
Q Consensus 102 ~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~ 153 (462)
. .+ ..+.+..+++||+++++...-..+.+.|+++++|+-.+.--.+
T Consensus 63 ~---~~---~~~~~~~~~lviaAt~d~~ln~~i~~~a~~~~i~vNv~D~p~~ 108 (210)
T COG1648 63 R---EF---DAEDLDDAFLVIAATDDEELNERIAKAARERRILVNVVDDPEL 108 (210)
T ss_pred c---cc---ChhhhcCceEEEEeCCCHHHHHHHHHHHHHhCCceeccCCccc
Confidence 1 11 2334556889999988888888999999999998665554443
No 78
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=95.68 E-value=0.023 Score=50.19 Aligned_cols=35 Identities=20% Similarity=0.291 Sum_probs=31.3
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 23 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 23 L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
++.++|+|+|+|++|..+++.|...|...++++|.
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r 51 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNR 51 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcC
Confidence 55789999999999999999999998778999874
No 79
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=95.43 E-value=0.064 Score=53.60 Aligned_cols=74 Identities=26% Similarity=0.225 Sum_probs=50.7
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCC-eEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCC-eEEEEec
Q 012484 25 KASVCLLNCGPTGSETLKNLVLGGIG-SITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAV-KAKFIEE 102 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl~Gv~-~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v-~v~~~~~ 102 (462)
..+|.|||+|.+|+.+|-.|+..|+. .+.|+|- ...|++..+.-|....|.. .+.....
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~-------------------~~~~~~g~~~Dl~~~~~~~~~~~i~~~ 66 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDI-------------------NKEKAEGDAMDLSHAVPFTSPTKIYAG 66 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC-------------------CCchhHHHHHHHHhhccccCCeEEEeC
Confidence 46999999999999999999999996 7999983 2335555556666665432 2222111
Q ss_pred ChhhhhcCCcCCCCCCcEEEEcC
Q 012484 103 YPEALIEMNPPFFSQFTLVVATQ 125 (462)
Q Consensus 103 ~~~~~~~~~~~~~~~~dvVi~~~ 125 (462)
+.+-++++|+||.+.
T Consensus 67 --------~~~~~~~adivIita 81 (315)
T PRK00066 67 --------DYSDCKDADLVVITA 81 (315)
T ss_pred --------CHHHhCCCCEEEEec
Confidence 112367999998764
No 80
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.42 E-value=0.1 Score=43.58 Aligned_cols=87 Identities=22% Similarity=0.206 Sum_probs=54.0
Q ss_pred EEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEecChhhh
Q 012484 28 VCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEAL 107 (462)
Q Consensus 28 VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~~ 107 (462)
|+|+|+|.+|.++++.|.. +--.++++|.+.- + .+.+.+.. +. ++..++.+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~-~~~~vvvid~d~~-------------------~----~~~~~~~~--~~--~i~gd~~~~ 52 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKE-GGIDVVVIDRDPE-------------------R----VEELREEG--VE--VIYGDATDP 52 (116)
T ss_dssp EEEES-SHHHHHHHHHHHH-TTSEEEEEESSHH-------------------H----HHHHHHTT--SE--EEES-TTSH
T ss_pred eEEEcCCHHHHHHHHHHHh-CCCEEEEEECCcH-------------------H----HHHHHhcc--cc--cccccchhh
Confidence 6899999999999999999 4467999985542 1 12333332 23 233332211
Q ss_pred hcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcC
Q 012484 108 IEMNPPFFSQFTLVVATQLGEEKMIKLDRICREAN 142 (462)
Q Consensus 108 ~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ 142 (462)
.-....-+.+++.|+++.++...-..+...+++.+
T Consensus 53 ~~l~~a~i~~a~~vv~~~~~d~~n~~~~~~~r~~~ 87 (116)
T PF02254_consen 53 EVLERAGIEKADAVVILTDDDEENLLIALLARELN 87 (116)
T ss_dssp HHHHHTTGGCESEEEEESSSHHHHHHHHHHHHHHT
T ss_pred hHHhhcCccccCEEEEccCCHHHHHHHHHHHHHHC
Confidence 10011235688889888877777777777888743
No 81
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=95.41 E-value=0.041 Score=44.36 Aligned_cols=89 Identities=19% Similarity=0.205 Sum_probs=51.6
Q ss_pred cEEEEcCChhHHHHHHHHHHhCC--CeEEEE-eCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEecC
Q 012484 27 SVCLLNCGPTGSETLKNLVLGGI--GSITVI-DGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY 103 (462)
Q Consensus 27 ~VlivG~g~lG~eiaknLvl~Gv--~~itlv-D~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~~ 103 (462)
+|.|||+|.+|..+++.|...|+ .+++++ +.+. .|+ +.+.+..+ +.+ ....
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~-------------------~~~----~~~~~~~~-~~~--~~~~ 54 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSP-------------------EKA----AELAKEYG-VQA--TADD 54 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSH-------------------HHH----HHHHHHCT-TEE--ESEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcH-------------------HHH----HHHHHhhc-ccc--ccCC
Confidence 68999999999999999999994 445433 3111 122 33334443 221 1111
Q ss_pred hhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHH-HHHcCceEEEE
Q 012484 104 PEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRI-CREANVMLIFA 148 (462)
Q Consensus 104 ~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~-~~~~~ip~i~~ 148 (462)
. .+.++..|+||.|..+......+... ....+.-+|+.
T Consensus 55 ~-------~~~~~~advvilav~p~~~~~v~~~i~~~~~~~~vis~ 93 (96)
T PF03807_consen 55 N-------EEAAQEADVVILAVKPQQLPEVLSEIPHLLKGKLVISI 93 (96)
T ss_dssp H-------HHHHHHTSEEEE-S-GGGHHHHHHHHHHHHTTSEEEEE
T ss_pred h-------HHhhccCCEEEEEECHHHHHHHHHHHhhccCCCEEEEe
Confidence 1 22345789999999887666655555 23445555554
No 82
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=95.31 E-value=0.038 Score=55.03 Aligned_cols=32 Identities=31% Similarity=0.447 Sum_probs=29.4
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCC-eEEEEeC
Q 012484 26 ASVCLLNCGPTGSETLKNLVLGGIG-SITVIDG 57 (462)
Q Consensus 26 ~~VlivG~g~lG~eiaknLvl~Gv~-~itlvD~ 57 (462)
.+|.|+|+|++|+.+|..|+..|+. +++|+|.
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~ 33 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDI 33 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 3799999999999999999999996 8999984
No 83
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=95.24 E-value=0.058 Score=53.83 Aligned_cols=35 Identities=26% Similarity=0.446 Sum_probs=32.5
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 23 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 23 L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
+...+|+|+|+|.+|..++++|...|+..++++|.
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r 210 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANR 210 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 57899999999999999999999999999999974
No 84
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.21 E-value=0.085 Score=55.32 Aligned_cols=36 Identities=22% Similarity=0.272 Sum_probs=32.1
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCc
Q 012484 23 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 59 (462)
Q Consensus 23 L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~ 59 (462)
|++++|+|+|.|++|..+|+.|+..|. .++++|.+.
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~ 38 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKE 38 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 578999999999999999999999997 699998643
No 85
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=95.12 E-value=0.026 Score=53.64 Aligned_cols=38 Identities=21% Similarity=0.411 Sum_probs=35.2
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHHHhCCC--eEEEEeCCc
Q 012484 22 ALEKASVCLLNCGPTGSETLKNLVLGGIG--SITVIDGSK 59 (462)
Q Consensus 22 ~L~~~~VlivG~g~lG~eiaknLvl~Gv~--~itlvD~d~ 59 (462)
.++..+|+|+|+|+.|..+++.|...|++ +|+|+|.+-
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 47788999999999999999999999999 999999763
No 86
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=95.06 E-value=0.14 Score=43.79 Aligned_cols=98 Identities=13% Similarity=0.159 Sum_probs=56.8
Q ss_pred cEEEEcC-ChhHHHHHHHHHH-hCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEecCh
Q 012484 27 SVCLLNC-GPTGSETLKNLVL-GGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYP 104 (462)
Q Consensus 27 ~VlivG~-g~lG~eiaknLvl-~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~~~ 104 (462)
||.|+|+ |-+|.++++.+.. .|+.=.-.+|... ++. -..|+| +.+..-...+.+ ..+.
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~---~~~------~g~d~g--------~~~~~~~~~~~v---~~~l 61 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKP---SAK------VGKDVG--------ELAGIGPLGVPV---TDDL 61 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTT---STT------TTSBCH--------HHCTSST-SSBE---BS-H
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCC---ccc------ccchhh--------hhhCcCCccccc---chhH
Confidence 7999999 9999999999999 7776566666443 000 012232 111111222221 1222
Q ss_pred hhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEeeccc
Q 012484 105 EALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGL 153 (462)
Q Consensus 105 ~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~ 153 (462)
+ +.+..+|+||..+ ..+......++|.++++|+|.+ |.|+
T Consensus 62 ~-------~~~~~~DVvIDfT-~p~~~~~~~~~~~~~g~~~ViG-TTG~ 101 (124)
T PF01113_consen 62 E-------ELLEEADVVIDFT-NPDAVYDNLEYALKHGVPLVIG-TTGF 101 (124)
T ss_dssp H-------HHTTH-SEEEEES--HHHHHHHHHHHHHHT-EEEEE--SSS
T ss_pred H-------HhcccCCEEEEcC-ChHHhHHHHHHHHhCCCCEEEE-CCCC
Confidence 2 2345689999888 4466667788899999997654 4454
No 87
>PLN00203 glutamyl-tRNA reductase
Probab=94.99 E-value=0.041 Score=58.62 Aligned_cols=34 Identities=26% Similarity=0.412 Sum_probs=31.9
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEe
Q 012484 23 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVID 56 (462)
Q Consensus 23 L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD 56 (462)
|..++|+|||+|.+|..++++|...|+.++++++
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~n 297 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVN 297 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEe
Confidence 5579999999999999999999999999999986
No 88
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.92 E-value=0.13 Score=51.18 Aligned_cols=70 Identities=19% Similarity=0.245 Sum_probs=47.9
Q ss_pred cEEEEcCChhHHHHHHHHHHhCC-CeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCC-----CCeEEEE
Q 012484 27 SVCLLNCGPTGSETLKNLVLGGI-GSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELND-----AVKAKFI 100 (462)
Q Consensus 27 ~VlivG~g~lG~eiaknLvl~Gv-~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp-----~v~v~~~ 100 (462)
+|.|||+|.+|+.+|-.|+..|+ +.+.|+|- -+.|++..+.-|....+ .+++.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di-------------------~~~~a~g~a~DL~~~~~~~~~~~~~i~-- 59 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDV-------------------NEGVAEGEALDFHHATALTYSTNTKIR-- 59 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC-------------------CcchhhHHHHHHHhhhccCCCCCEEEE--
Confidence 68999999999999999999998 57999982 23355554555555433 23332
Q ss_pred ecChhhhhcCCcCCCCCCcEEEEcC
Q 012484 101 EEYPEALIEMNPPFFSQFTLVVATQ 125 (462)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~dvVi~~~ 125 (462)
.. +.+-++++|+||.|.
T Consensus 60 ~~--------~y~~~~~aDivvita 76 (307)
T cd05290 60 AG--------DYDDCADADIIVITA 76 (307)
T ss_pred EC--------CHHHhCCCCEEEECC
Confidence 21 123467899998764
No 89
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=94.91 E-value=0.06 Score=53.38 Aligned_cols=118 Identities=18% Similarity=0.216 Sum_probs=68.7
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHh-CCCCeEEEEecC--
Q 012484 27 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQEL-NDAVKAKFIEEY-- 103 (462)
Q Consensus 27 ~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~l-Np~v~v~~~~~~-- 103 (462)
+|.|||+|.+|+.++++|...|. +++++|.+.-....+. +.|..-+....+.+... ++++-+..+...
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~-~v~v~dr~~~~~~~~~--------~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~ 72 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGH-EVVGYDRNPEAVEALA--------EEGATGADSLEELVAKLPAPRVVWLMVPAGEI 72 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHH--------HCCCeecCCHHHHHhhcCCCCEEEEEecCCcH
Confidence 69999999999999999999996 5888886532211110 01211111122233332 455555544432
Q ss_pred hhhhhcCCcCCCCCCcEEEEc-CCChHHHHHHHHHHHHcCceEEEEeeccc
Q 012484 104 PEALIEMNPPFFSQFTLVVAT-QLGEEKMIKLDRICREANVMLIFARSYGL 153 (462)
Q Consensus 104 ~~~~~~~~~~~~~~~dvVi~~-~~~~~~~~~l~~~~~~~~ip~i~~~~~G~ 153 (462)
...+.+.-...+..-++||.+ +.+......+.+.+++.++.++++...|.
T Consensus 73 ~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~ 123 (301)
T PRK09599 73 TDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGG 123 (301)
T ss_pred HHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcC
Confidence 112221111234445677765 34445566678889999999999877664
No 90
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.70 E-value=0.17 Score=53.05 Aligned_cols=96 Identities=15% Similarity=0.059 Sum_probs=58.8
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEec
Q 012484 23 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE 102 (462)
Q Consensus 23 L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~ 102 (462)
+...+|+|+|+|.+|..+++.|...|. .++++|.+.= +. +.+.+..+.+.+ +..
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~-~v~vid~~~~-------------------~~----~~~~~~~~~~~~--i~g 282 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGY-SVKLIERDPE-------------------RA----EELAEELPNTLV--LHG 282 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHH-------------------HH----HHHHHHCCCCeE--EEC
Confidence 457899999999999999999999888 4888874431 11 233333333332 222
Q ss_pred ChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCce
Q 012484 103 YPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVM 144 (462)
Q Consensus 103 ~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip 144 (462)
+...........+.+++.||++..+......+...|++.+.+
T Consensus 283 d~~~~~~L~~~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~~~ 324 (453)
T PRK09496 283 DGTDQELLEEEGIDEADAFIALTNDDEANILSSLLAKRLGAK 324 (453)
T ss_pred CCCCHHHHHhcCCccCCEEEECCCCcHHHHHHHHHHHHhCCC
Confidence 221110001123568899988776655555566677777654
No 91
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.51 E-value=0.11 Score=51.93 Aligned_cols=73 Identities=18% Similarity=0.232 Sum_probs=49.3
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCC-eEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCC---eEEEE
Q 012484 25 KASVCLLNCGPTGSETLKNLVLGGIG-SITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAV---KAKFI 100 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl~Gv~-~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v---~v~~~ 100 (462)
..+|.|||+|.+|+.+|-.|+..|.. .+.|+|-. ..|++..+.-|+...|.. ++...
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~-------------------~~~~~g~a~Dl~~~~~~~~~~~v~~~ 63 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVV-------------------EDKLKGEAMDLQHGSAFLKNPKIEAD 63 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------ccHHHHHHHHHHHhhccCCCCEEEEC
Confidence 46899999999999999999999995 59999832 234555455555554422 22211
Q ss_pred ecChhhhhcCCcCCCCCCcEEEEcC
Q 012484 101 EEYPEALIEMNPPFFSQFTLVVATQ 125 (462)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~dvVi~~~ 125 (462)
. +.+.++++|+||.|.
T Consensus 64 -~--------dy~~~~~adivvita 79 (312)
T cd05293 64 -K--------DYSVTANSKVVIVTA 79 (312)
T ss_pred -C--------CHHHhCCCCEEEECC
Confidence 1 222367899998754
No 92
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=94.49 E-value=0.075 Score=56.04 Aligned_cols=123 Identities=11% Similarity=0.110 Sum_probs=71.9
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCccccccccccccc--HHHHHHHHHHHh-CCCCeEEEEec
Q 012484 26 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGES--KAKSVCAFLQEL-NDAVKAKFIEE 102 (462)
Q Consensus 26 ~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~--Ka~~~~~~l~~l-Np~v~v~~~~~ 102 (462)
++|.|||+|..|+.+|.||...|. +++++|.+.-....+... ...-|.. -+..+.+.+..+ .|++-+-.+..
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~-~V~v~dr~~~~~~~l~~~----~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~ 76 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGF-KISVYNRTYEKTEEFVKK----AKEGNTRVKGYHTLEELVNSLKKPRKVILLIKA 76 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHh----hhhcCCcceecCCHHHHHhcCCCCCEEEEEeCC
Confidence 579999999999999999999998 699998654322211100 0000100 112233444443 35544433322
Q ss_pred C--hhhhhcCCcCCCCCCcEEEEcCC-ChHHHHHHHHHHHHcCceEEEEeeccc
Q 012484 103 Y--PEALIEMNPPFFSQFTLVVATQL-GEEKMIKLDRICREANVMLIFARSYGL 153 (462)
Q Consensus 103 ~--~~~~~~~~~~~~~~~dvVi~~~~-~~~~~~~l~~~~~~~~ip~i~~~~~G~ 153 (462)
. ...+.+.....+..=|+||.+.. ......+....+.++|+.|+.+++.|-
T Consensus 77 ~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG 130 (470)
T PTZ00142 77 GEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGG 130 (470)
T ss_pred hHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCC
Confidence 1 12222222234566688887653 345555566788889999999998763
No 93
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=94.48 E-value=0.25 Score=51.76 Aligned_cols=96 Identities=18% Similarity=0.160 Sum_probs=56.1
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEecChhh
Q 012484 27 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEA 106 (462)
Q Consensus 27 ~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~ 106 (462)
+|+|+|+|.+|..+++.|...|. .++++|.+.- ++ +.+.+ ...+. ++..+...
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~-~v~vid~~~~-------------------~~----~~~~~-~~~~~--~~~gd~~~ 54 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENN-DVTVIDTDEE-------------------RL----RRLQD-RLDVR--TVVGNGSS 54 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-cEEEEECCHH-------------------HH----HHHHh-hcCEE--EEEeCCCC
Confidence 79999999999999999999987 5778874321 11 12222 11222 22222211
Q ss_pred hhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHc-CceEEEEe
Q 012484 107 LIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREA-NVMLIFAR 149 (462)
Q Consensus 107 ~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~-~ip~i~~~ 149 (462)
.......-+.++|.||++..+...-..+...+++. +.+-+.+.
T Consensus 55 ~~~l~~~~~~~a~~vi~~~~~~~~n~~~~~~~r~~~~~~~ii~~ 98 (453)
T PRK09496 55 PDVLREAGAEDADLLIAVTDSDETNMVACQIAKSLFGAPTTIAR 98 (453)
T ss_pred HHHHHHcCCCcCCEEEEecCChHHHHHHHHHHHHhcCCCeEEEE
Confidence 00001122568899988776655555566677775 55444443
No 94
>PLN02602 lactate dehydrogenase
Probab=94.24 E-value=0.12 Score=52.35 Aligned_cols=73 Identities=14% Similarity=0.146 Sum_probs=49.1
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCC-CeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCC---CCeEEEEe
Q 012484 26 ASVCLLNCGPTGSETLKNLVLGGI-GSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELND---AVKAKFIE 101 (462)
Q Consensus 26 ~~VlivG~g~lG~eiaknLvl~Gv-~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp---~v~v~~~~ 101 (462)
.+|.|||+|.+|+.+|-.|+..|+ .++.|+|- .+.|++..+.-|+...| .+++...
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi-------------------~~~~~~g~a~DL~~~~~~~~~~~i~~~- 97 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDV-------------------NPDKLRGEMLDLQHAAAFLPRTKILAS- 97 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeC-------------------CCchhhHHHHHHHhhhhcCCCCEEEeC-
Confidence 699999999999999999999999 47999983 22344444445554433 2333221
Q ss_pred cChhhhhcCCcCCCCCCcEEEEcCC
Q 012484 102 EYPEALIEMNPPFFSQFTLVVATQL 126 (462)
Q Consensus 102 ~~~~~~~~~~~~~~~~~dvVi~~~~ 126 (462)
.+.+.++++|+||.+..
T Consensus 98 --------~dy~~~~daDiVVitAG 114 (350)
T PLN02602 98 --------TDYAVTAGSDLCIVTAG 114 (350)
T ss_pred --------CCHHHhCCCCEEEECCC
Confidence 01223679999997743
No 95
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=94.20 E-value=0.15 Score=51.19 Aligned_cols=35 Identities=20% Similarity=0.434 Sum_probs=31.5
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 23 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 23 L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
++..+|.|||+|.+|+.+|..++..|...+.|+|-
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi 38 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDI 38 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeC
Confidence 45679999999999999999999999877999984
No 96
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=94.14 E-value=0.14 Score=50.85 Aligned_cols=71 Identities=18% Similarity=0.178 Sum_probs=49.0
Q ss_pred EEEEcCChhHHHHHHHHHHhCC-CeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCC---CeEEEEecC
Q 012484 28 VCLLNCGPTGSETLKNLVLGGI-GSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDA---VKAKFIEEY 103 (462)
Q Consensus 28 VlivG~g~lG~eiaknLvl~Gv-~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~---v~v~~~~~~ 103 (462)
|.|||+|.+|+.+|-.|+..|+ .+++++|.+ +.|++..+.-|.+..+. +++.. ..
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~-------------------~~~~~g~~~DL~~~~~~~~~~~i~~-~~- 59 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVN-------------------EEKAKGDALDLSHASAFLATGTIVR-GG- 59 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC-------------------ccHHHHHHHhHHHhccccCCCeEEE-CC-
Confidence 5799999999999999999998 569999832 34566666666666553 22221 11
Q ss_pred hhhhhcCCcCCCCCCcEEEEcCC
Q 012484 104 PEALIEMNPPFFSQFTLVVATQL 126 (462)
Q Consensus 104 ~~~~~~~~~~~~~~~dvVi~~~~ 126 (462)
+.+-+.++|+||.|..
T Consensus 60 -------~~~~l~~aDiVIitag 75 (300)
T cd00300 60 -------DYADAADADIVVITAG 75 (300)
T ss_pred -------CHHHhCCCCEEEEcCC
Confidence 1234678999997654
No 97
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=94.01 E-value=0.43 Score=47.49 Aligned_cols=29 Identities=24% Similarity=0.387 Sum_probs=26.1
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEE
Q 012484 26 ASVCLLNCGPTGSETLKNLVLGGIGSITVI 55 (462)
Q Consensus 26 ~~VlivG~g~lG~eiaknLvl~Gv~~itlv 55 (462)
.+|+|+|+|++|+-.+-.|.++| ..++++
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~ 29 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLL 29 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-CeEEEE
Confidence 37999999999999999999999 777775
No 98
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=93.98 E-value=0.1 Score=40.65 Aligned_cols=54 Identities=24% Similarity=0.299 Sum_probs=38.0
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhC
Q 012484 27 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELN 92 (462)
Q Consensus 27 ~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lN 92 (462)
||+|||.|.+|+|+|..|...|. ++|+++...- +. ...+..-++.+.+.+++.+
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~~---------~~--~~~~~~~~~~~~~~l~~~g 54 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSDR---------LL--PGFDPDAAKILEEYLRKRG 54 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSSS---------SS--TTSSHHHHHHHHHHHHHTT
T ss_pred CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccch---------hh--hhcCHHHHHHHHHHHHHCC
Confidence 68999999999999999999995 7899874332 11 1123333455666777663
No 99
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=93.97 E-value=0.34 Score=55.61 Aligned_cols=97 Identities=18% Similarity=0.150 Sum_probs=57.0
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCC-C------------eEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHH
Q 012484 24 EKASVCLLNCGPTGSETLKNLVLGGI-G------------SITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQE 90 (462)
Q Consensus 24 ~~~~VlivG~g~lG~eiaknLvl~Gv-~------------~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~ 90 (462)
+.++|+|+|+|.+|..++..|+..+- . .+++.|. ...+++.+++.
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~-------------------~~~~a~~la~~--- 625 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASL-------------------YLKDAKETVEG--- 625 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECC-------------------CHHHHHHHHHh---
Confidence 46799999999999999999987532 2 1444432 22234333332
Q ss_pred hCCCCeEEEEe-cChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEE
Q 012484 91 LNDAVKAKFIE-EYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFA 148 (462)
Q Consensus 91 lNp~v~v~~~~-~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~ 148 (462)
.|.++...++ .+.+.+ ..++++.|+||.+..+ ..-..+.+.|.++++.++..
T Consensus 626 -~~~~~~v~lDv~D~e~L----~~~v~~~DaVIsalP~-~~H~~VAkaAieaGkHvv~e 678 (1042)
T PLN02819 626 -IENAEAVQLDVSDSESL----LKYVSQVDVVISLLPA-SCHAVVAKACIELKKHLVTA 678 (1042)
T ss_pred -cCCCceEEeecCCHHHH----HHhhcCCCEEEECCCc-hhhHHHHHHHHHcCCCEEEC
Confidence 2443322221 122222 2234678888877755 34456777777777776654
No 100
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=93.97 E-value=0.092 Score=41.68 Aligned_cols=38 Identities=24% Similarity=0.292 Sum_probs=34.5
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCc
Q 012484 22 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 59 (462)
Q Consensus 22 ~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~ 59 (462)
.+..++++|+|+|.+|.-++..|...|...++++|.|.
T Consensus 20 ~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~rdi 57 (86)
T cd05191 20 SLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDRDI 57 (86)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 37789999999999999999999999989999999844
No 101
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=93.79 E-value=0.21 Score=45.98 Aligned_cols=81 Identities=16% Similarity=0.192 Sum_probs=51.7
Q ss_pred HHhcCcEEEEcC-ChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEE
Q 012484 22 ALEKASVCLLNC-GPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFI 100 (462)
Q Consensus 22 ~L~~~~VlivG~-g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~ 100 (462)
.+++++|+|+|. |++|..+++.|+..| .++++++.+ ..|++.+++.+.+.. .+.+...
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g-~~V~l~~R~-------------------~~~~~~l~~~l~~~~-~~~~~~~ 83 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREG-ARVVLVGRD-------------------LERAQKAADSLRARF-GEGVGAV 83 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCC-------------------HHHHHHHHHHHHhhc-CCcEEEe
Confidence 467889999996 999999999999998 488888633 135555555554322 2333332
Q ss_pred ecC-hhhhhcCCcCCCCCCcEEEEcCCC
Q 012484 101 EEY-PEALIEMNPPFFSQFTLVVATQLG 127 (462)
Q Consensus 101 ~~~-~~~~~~~~~~~~~~~dvVi~~~~~ 127 (462)
... ... ..+.+.++|+||.++..
T Consensus 84 ~~~~~~~----~~~~~~~~diVi~at~~ 107 (194)
T cd01078 84 ETSDDAA----RAAAIKGADVVFAAGAA 107 (194)
T ss_pred eCCCHHH----HHHHHhcCCEEEECCCC
Confidence 211 111 12345688999987654
No 102
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=93.75 E-value=0.31 Score=51.66 Aligned_cols=123 Identities=11% Similarity=0.085 Sum_probs=73.5
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCccccccccccccc---HHHHHHHHHHHh-CCCCeEEEEe
Q 012484 26 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGES---KAKSVCAFLQEL-NDAVKAKFIE 101 (462)
Q Consensus 26 ~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~---Ka~~~~~~l~~l-Np~v~v~~~~ 101 (462)
.+|.+||+|..|+.+|+||+..|. +++++|.+.-....+... ....|.. -+..+.+....+ .|++-+..+.
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~-~V~V~NRt~~k~~~l~~~----~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~ 81 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVER----AKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVK 81 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCC-eEEEECCCHHHHHHHHHh----hhhcCCcccccCCCHHHHHhcCCCCCEEEEECC
Confidence 579999999999999999999997 688888543221111100 0000111 112233333333 3666655544
Q ss_pred cCh--hhhhcCCcCCCCCCcEEEEcC-CChHHHHHHHHHHHHcCceEEEEeeccc
Q 012484 102 EYP--EALIEMNPPFFSQFTLVVATQ-LGEEKMIKLDRICREANVMLIFARSYGL 153 (462)
Q Consensus 102 ~~~--~~~~~~~~~~~~~~dvVi~~~-~~~~~~~~l~~~~~~~~ip~i~~~~~G~ 153 (462)
... +.+.+.-...+..=|+||.+. .+.....++.+.+.+.|+.|+.+.+.|.
T Consensus 82 ~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG 136 (493)
T PLN02350 82 AGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGG 136 (493)
T ss_pred CcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCC
Confidence 321 122211123355567888665 4456677788899999999999988764
No 103
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=93.70 E-value=0.15 Score=53.67 Aligned_cols=121 Identities=12% Similarity=0.150 Sum_probs=70.1
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCccccccccccc--ccHHHHHHHHHHHh-CCCCeEEEEecC
Q 012484 27 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVG--ESKAKSVCAFLQEL-NDAVKAKFIEEY 103 (462)
Q Consensus 27 ~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG--~~Ka~~~~~~l~~l-Np~v~v~~~~~~ 103 (462)
.|.|||+|..|..+|.||+..|. +++++|.+.-....+...+ ..| -.-+....+..+.+ .|++-+..+...
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~-~V~v~drt~~~~~~l~~~~-----~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~ 74 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGF-TVSVYNRTPEKTDEFLAEH-----AKGKKIVGAYSIEEFVQSLERPRKIMLMVKAG 74 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHhhc-----cCCCCceecCCHHHHHhhcCCCCEEEEECCCc
Confidence 48899999999999999999998 6889886543322221110 001 00111122333333 355544443321
Q ss_pred --hhhhhcCCcCCCCCCcEEEEcCC-ChHHHHHHHHHHHHcCceEEEEeeccc
Q 012484 104 --PEALIEMNPPFFSQFTLVVATQL-GEEKMIKLDRICREANVMLIFARSYGL 153 (462)
Q Consensus 104 --~~~~~~~~~~~~~~~dvVi~~~~-~~~~~~~l~~~~~~~~ip~i~~~~~G~ 153 (462)
...+.+.-...+..=++||.+.. ......+..+.+.+.++.|+.+.+.|-
T Consensus 75 ~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG 127 (467)
T TIGR00873 75 APVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGG 127 (467)
T ss_pred HHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCC
Confidence 12222222234555688887653 434444556678889999999988773
No 104
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=93.63 E-value=0.29 Score=46.77 Aligned_cols=26 Identities=12% Similarity=0.249 Sum_probs=23.2
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCC
Q 012484 24 EKASVCLLNCGPTGSETLKNLVLGGI 49 (462)
Q Consensus 24 ~~~~VlivG~g~lG~eiaknLvl~Gv 49 (462)
+..+|.|||+|.+|..+++.|...|.
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~ 28 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSK 28 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCC
Confidence 45789999999999999999998873
No 105
>PRK00811 spermidine synthase; Provisional
Probab=93.50 E-value=0.68 Score=45.54 Aligned_cols=76 Identities=13% Similarity=0.236 Sum_probs=45.0
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHh------CCCCeE
Q 012484 24 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQEL------NDAVKA 97 (462)
Q Consensus 24 ~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~l------Np~v~v 97 (462)
...+||++|+|+ |.-....|-..++.+++.+|-|. .-++.+++.+.++ +|.+
T Consensus 76 ~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEid~-------------------~vv~~a~~~~~~~~~~~~~d~rv-- 133 (283)
T PRK00811 76 NPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEIDE-------------------RVVEVCRKYLPEIAGGAYDDPRV-- 133 (283)
T ss_pred CCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeCCH-------------------HHHHHHHHHhHHhccccccCCce--
Confidence 357899999974 33333334446899999998444 2344555666554 3444
Q ss_pred EEEecChhhhhcCCcCCCCCCcEEEEc
Q 012484 98 KFIEEYPEALIEMNPPFFSQFTLVVAT 124 (462)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~dvVi~~ 124 (462)
+.+..+...+.... -..||+||+.
T Consensus 134 ~v~~~Da~~~l~~~---~~~yDvIi~D 157 (283)
T PRK00811 134 ELVIGDGIKFVAET---ENSFDVIIVD 157 (283)
T ss_pred EEEECchHHHHhhC---CCcccEEEEC
Confidence 44444444443221 1379999863
No 106
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=93.39 E-value=0.07 Score=48.62 Aligned_cols=43 Identities=19% Similarity=0.204 Sum_probs=35.1
Q ss_pred HHHHHHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcc
Q 012484 17 EQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKV 60 (462)
Q Consensus 17 ~~~q~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v 60 (462)
......|.+++|.|+|+|.+|.++|+-|...|+ ++..+|...-
T Consensus 28 ~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~ 70 (178)
T PF02826_consen 28 RFPGRELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPK 70 (178)
T ss_dssp TTTBS-STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCH
T ss_pred CCCccccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCC
Confidence 334457899999999999999999999999999 7888886554
No 107
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=93.33 E-value=0.03 Score=49.96 Aligned_cols=32 Identities=16% Similarity=0.272 Sum_probs=28.4
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCc
Q 012484 27 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 59 (462)
Q Consensus 27 ~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~ 59 (462)
+|.|+|+|..|+.+|..|+..| .+++|+..+.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g-~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG-HEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT-EEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CEEEEEeccH
Confidence 6899999999999999999999 7788886543
No 108
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=93.32 E-value=0.24 Score=49.04 Aligned_cols=118 Identities=16% Similarity=0.147 Sum_probs=64.1
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHh-CCCCeEEEEecC--
Q 012484 27 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQEL-NDAVKAKFIEEY-- 103 (462)
Q Consensus 27 ~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~l-Np~v~v~~~~~~-- 103 (462)
+|.+||+|.+|..++++|...|. .++++|.+.-....+. ..|...+....+.+++. ++++-+..+...
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~-~v~v~dr~~~~~~~~~--------~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~ 72 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGH-EVVGYDVNQEAVDVAG--------KLGITARHSLEELVSKLEAPRTIWVMVPAGEV 72 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHH--------HCCCeecCCHHHHHHhCCCCCEEEEEecCchH
Confidence 69999999999999999999996 5888886532111110 11211111122222222 234444443322
Q ss_pred hhhhhcCCcCCCCCCcEEEEc-CCChHHHHHHHHHHHHcCceEEEEeeccc
Q 012484 104 PEALIEMNPPFFSQFTLVVAT-QLGEEKMIKLDRICREANVMLIFARSYGL 153 (462)
Q Consensus 104 ~~~~~~~~~~~~~~~dvVi~~-~~~~~~~~~l~~~~~~~~ip~i~~~~~G~ 153 (462)
...+.+.-...+..=.+||.+ +.+......+.+.+.++++.++++...|.
T Consensus 73 ~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~ 123 (299)
T PRK12490 73 TESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGG 123 (299)
T ss_pred HHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCC
Confidence 112211111223333566655 34445566677777888888888776654
No 109
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=93.23 E-value=0.17 Score=50.05 Aligned_cols=117 Identities=15% Similarity=0.185 Sum_probs=62.6
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHh-CCCCeEEEEecC-h
Q 012484 27 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQEL-NDAVKAKFIEEY-P 104 (462)
Q Consensus 27 ~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~l-Np~v~v~~~~~~-~ 104 (462)
+|.|||+|.+|+.++.+|+..|. .++++|.+.-....+... |...+....+....+ .+++-+..+... .
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~ 72 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQDAVKAMKED--------RTTGVANLRELSQRLSAPRVVWVMVPHGIV 72 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHc--------CCcccCCHHHHHhhcCCCCEEEEEcCchHH
Confidence 69999999999999999999995 577888654222111110 100000111111111 344443333321 1
Q ss_pred hhhhcCCcCCCCCCcEEEEcCC-ChHHHHHHHHHHHHcCceEEEEeecc
Q 012484 105 EALIEMNPPFFSQFTLVVATQL-GEEKMIKLDRICREANVMLIFARSYG 152 (462)
Q Consensus 105 ~~~~~~~~~~~~~~dvVi~~~~-~~~~~~~l~~~~~~~~ip~i~~~~~G 152 (462)
..+.+.-...+..=++||.+.. .......+...+.+.++.++.+.+.|
T Consensus 73 ~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsG 121 (298)
T TIGR00872 73 DAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSG 121 (298)
T ss_pred HHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCC
Confidence 1221111123434467776543 33445555667778888888888765
No 110
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=93.16 E-value=0.18 Score=50.50 Aligned_cols=31 Identities=19% Similarity=0.330 Sum_probs=27.9
Q ss_pred CcEEEEcC-ChhHHHHHHHHHHhCCC------eEEEEe
Q 012484 26 ASVCLLNC-GPTGSETLKNLVLGGIG------SITVID 56 (462)
Q Consensus 26 ~~VlivG~-g~lG~eiaknLvl~Gv~------~itlvD 56 (462)
.+|.|||+ |.+|+.+|-.|+..|+- ++.|+|
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~D 41 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLD 41 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEe
Confidence 58999998 99999999999999984 588887
No 111
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=93.04 E-value=0.29 Score=49.18 Aligned_cols=75 Identities=19% Similarity=0.236 Sum_probs=52.6
Q ss_pred cCcEEEEcCChhHHHHHHHHH-HhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEecC
Q 012484 25 KASVCLLNCGPTGSETLKNLV-LGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY 103 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLv-l~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~~ 103 (462)
.++++|+|+|+.|...++.|. ..|+.+++|++.+ ..|++.+++.+.+..+ +++.... +
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~-------------------~~~a~~~a~~~~~~~g-~~v~~~~-~ 187 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWARD-------------------SAKAEALALQLSSLLG-IDVTAAT-D 187 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCC-------------------HHHHHHHHHHHHhhcC-ceEEEeC-C
Confidence 468999999999999999997 5889999998632 2477777777754332 3433221 1
Q ss_pred hhhhhcCCcCCCCCCcEEEEcCCC
Q 012484 104 PEALIEMNPPFFSQFTLVVATQLG 127 (462)
Q Consensus 104 ~~~~~~~~~~~~~~~dvVi~~~~~ 127 (462)
. .+.+.++|+||+|+.+
T Consensus 188 ~-------~~av~~aDiVvtaT~s 204 (326)
T TIGR02992 188 P-------RAAMSGADIIVTTTPS 204 (326)
T ss_pred H-------HHHhccCCEEEEecCC
Confidence 1 2235689999988755
No 112
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=93.04 E-value=0.35 Score=53.01 Aligned_cols=90 Identities=14% Similarity=0.203 Sum_probs=59.7
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEecCh
Q 012484 25 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYP 104 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~~~ 104 (462)
+.+|+|+|+|.+|..+++.|...|+ .++++|.|.- +++ .+++. ..++-.-+...
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~-------------------~v~----~~~~~--g~~v~~GDat~ 453 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPD-------------------HIE----TLRKF--GMKVFYGDATR 453 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHH-------------------HHH----HHHhc--CCeEEEEeCCC
Confidence 5799999999999999999999998 5889986652 232 22222 23332222111
Q ss_pred hhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcC
Q 012484 105 EALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREAN 142 (462)
Q Consensus 105 ~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ 142 (462)
.++. ...-+.++++||++.++.+....+...++++.
T Consensus 454 ~~~L--~~agi~~A~~vvv~~~d~~~n~~i~~~ar~~~ 489 (621)
T PRK03562 454 MDLL--ESAGAAKAEVLINAIDDPQTSLQLVELVKEHF 489 (621)
T ss_pred HHHH--HhcCCCcCCEEEEEeCCHHHHHHHHHHHHHhC
Confidence 1121 11235588999988888777777778888774
No 113
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.98 E-value=0.56 Score=46.59 Aligned_cols=32 Identities=19% Similarity=0.373 Sum_probs=28.5
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 26 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 26 ~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
.+|.|||+|.+|+.++..|+..|. .++++|.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~ 36 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVM 36 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence 579999999999999999999997 68888843
No 114
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.89 E-value=0.42 Score=50.61 Aligned_cols=35 Identities=23% Similarity=0.312 Sum_probs=31.1
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 23 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 23 L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
+...+|+|+|.|++|.++|..|...|. +++++|..
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~ 48 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDG 48 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 567799999999999999999999997 59999854
No 115
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=92.87 E-value=0.52 Score=46.84 Aligned_cols=32 Identities=22% Similarity=0.263 Sum_probs=28.5
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 25 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
..+|+|+|+|++|+-++-.|.++|. .+++++.
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r 33 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGL-PVRLILR 33 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCC-CeEEEEe
Confidence 3579999999999999999999995 6888875
No 116
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=92.87 E-value=0.58 Score=46.05 Aligned_cols=30 Identities=20% Similarity=0.354 Sum_probs=27.5
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 27 SVCLLNCGPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 27 ~VlivG~g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
+|+|+|+|++|+.++..|+.+|. .++++|.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r 31 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVAR 31 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEEC
Confidence 69999999999999999999994 6999885
No 117
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=92.83 E-value=0.15 Score=47.94 Aligned_cols=61 Identities=26% Similarity=0.287 Sum_probs=47.9
Q ss_pred HhcCcEEEEc-CChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEe
Q 012484 23 LEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIE 101 (462)
Q Consensus 23 L~~~~VlivG-~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~ 101 (462)
+.+++++++| +||+|-+++|.|...|+....|.|.. +| -.+...|+++||.+++.++.
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~----En-----------------~~a~akL~ai~p~~~v~F~~ 61 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSE----EN-----------------PEAIAKLQAINPSVSVIFIK 61 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHcCchheeehhhh----hC-----------------HHHHHHHhccCCCceEEEEE
Confidence 4578888885 89999999999999999988887621 11 12336899999999988877
Q ss_pred cCh
Q 012484 102 EYP 104 (462)
Q Consensus 102 ~~~ 104 (462)
.+.
T Consensus 62 ~DV 64 (261)
T KOG4169|consen 62 CDV 64 (261)
T ss_pred ecc
Confidence 654
No 118
>PRK06141 ornithine cyclodeaminase; Validated
Probab=92.72 E-value=0.5 Score=47.19 Aligned_cols=76 Identities=16% Similarity=0.127 Sum_probs=51.9
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHH-hCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEe
Q 012484 23 LEKASVCLLNCGPTGSETLKNLVL-GGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIE 101 (462)
Q Consensus 23 L~~~~VlivG~g~lG~eiaknLvl-~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~ 101 (462)
...++|+|+|+|+.|..+++.+.+ .|+.++++++.+ ..|++..++.+.+... .+....
T Consensus 123 ~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs-------------------~~~a~~~a~~~~~~g~--~~~~~~ 181 (314)
T PRK06141 123 KDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRD-------------------PAKAEALAAELRAQGF--DAEVVT 181 (314)
T ss_pred CCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCC-------------------HHHHHHHHHHHHhcCC--ceEEeC
Confidence 346899999999999999987665 688999998632 3477777777765422 222221
Q ss_pred cChhhhhcCCcCCCCCCcEEEEcCCC
Q 012484 102 EYPEALIEMNPPFFSQFTLVVATQLG 127 (462)
Q Consensus 102 ~~~~~~~~~~~~~~~~~dvVi~~~~~ 127 (462)
++. +.+.++|+||+++.+
T Consensus 182 -~~~-------~av~~aDIVi~aT~s 199 (314)
T PRK06141 182 -DLE-------AAVRQADIISCATLS 199 (314)
T ss_pred -CHH-------HHHhcCCEEEEeeCC
Confidence 221 235689999877764
No 119
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=92.64 E-value=0.42 Score=46.31 Aligned_cols=31 Identities=23% Similarity=0.400 Sum_probs=26.2
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCC--CeEEEEe
Q 012484 26 ASVCLLNCGPTGSETLKNLVLGGI--GSITVID 56 (462)
Q Consensus 26 ~~VlivG~g~lG~eiaknLvl~Gv--~~itlvD 56 (462)
.+|.|||+|.+|+.++..|...|. ..++++|
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~ 35 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSD 35 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEc
Confidence 479999999999999999999984 4566665
No 120
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=92.60 E-value=0.63 Score=46.22 Aligned_cols=33 Identities=27% Similarity=0.333 Sum_probs=29.1
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCC-CeEEEEeC
Q 012484 25 KASVCLLNCGPTGSETLKNLVLGGI-GSITVIDG 57 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl~Gv-~~itlvD~ 57 (462)
..+|+|||+|.+|..+++.|...|. .+++++|.
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr 39 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADR 39 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 4689999999999999999999997 47888874
No 121
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=92.56 E-value=0.4 Score=46.92 Aligned_cols=25 Identities=12% Similarity=0.337 Sum_probs=22.8
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCC
Q 012484 25 KASVCLLNCGPTGSETLKNLVLGGI 49 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl~Gv 49 (462)
..+|.+||+|.+|..++++|...|+
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~ 27 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANV 27 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC
Confidence 4589999999999999999999983
No 122
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=92.39 E-value=0.47 Score=51.79 Aligned_cols=90 Identities=17% Similarity=0.228 Sum_probs=59.0
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEecCh
Q 012484 25 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYP 104 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~~~ 104 (462)
+.+|+|+|.|.+|..+++.|...|+ .++++|.|.- +++ .+++. ...+-.-+...
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~-------------------~v~----~~~~~--g~~v~~GDat~ 453 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKM-RITVLERDIS-------------------AVN----LMRKY--GYKVYYGDATQ 453 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHH-------------------HHH----HHHhC--CCeEEEeeCCC
Confidence 5799999999999999999999999 5899996652 222 22322 22222111111
Q ss_pred hhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcC
Q 012484 105 EALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREAN 142 (462)
Q Consensus 105 ~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ 142 (462)
.+.. ...-+.++++||++.++.+....+-..+|+++
T Consensus 454 ~~~L--~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~ 489 (601)
T PRK03659 454 LELL--RAAGAEKAEAIVITCNEPEDTMKIVELCQQHF 489 (601)
T ss_pred HHHH--HhcCCccCCEEEEEeCCHHHHHHHHHHHHHHC
Confidence 1111 11235689999988888777777777888765
No 123
>PRK08618 ornithine cyclodeaminase; Validated
Probab=92.38 E-value=0.38 Score=48.27 Aligned_cols=78 Identities=13% Similarity=0.231 Sum_probs=52.7
Q ss_pred hcCcEEEEcCChhHHHHHHHHH-HhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEec
Q 012484 24 EKASVCLLNCGPTGSETLKNLV-LGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE 102 (462)
Q Consensus 24 ~~~~VlivG~g~lG~eiaknLv-l~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~ 102 (462)
...+|+|+|+|+.|...+..+. ..|+.+++++|.+ ..|++.+++.+.+..+ +++....
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~-------------------~~~a~~~~~~~~~~~~-~~~~~~~- 184 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRT-------------------FEKAYAFAQEIQSKFN-TEIYVVN- 184 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCC-------------------HHHHHHHHHHHHHhcC-CcEEEeC-
Confidence 4578999999999998888775 5799999999733 2366666666654332 3333322
Q ss_pred ChhhhhcCCcCCCCCCcEEEEcCCChH
Q 012484 103 YPEALIEMNPPFFSQFTLVVATQLGEE 129 (462)
Q Consensus 103 ~~~~~~~~~~~~~~~~dvVi~~~~~~~ 129 (462)
+. .+.+.++|+||+|+.+.+
T Consensus 185 ~~-------~~~~~~aDiVi~aT~s~~ 204 (325)
T PRK08618 185 SA-------DEAIEEADIIVTVTNAKT 204 (325)
T ss_pred CH-------HHHHhcCCEEEEccCCCC
Confidence 11 123468999998876543
No 124
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=92.28 E-value=0.45 Score=46.39 Aligned_cols=32 Identities=9% Similarity=0.222 Sum_probs=29.0
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEe
Q 012484 24 EKASVCLLNCGPTGSETLKNLVLGGIGSITVID 56 (462)
Q Consensus 24 ~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD 56 (462)
..++|+|+|+|++|..++..|...|. +++++|
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~ 147 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLKADC-NVIIAN 147 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEe
Confidence 46789999999999999999999996 899886
No 125
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=92.23 E-value=0.58 Score=45.72 Aligned_cols=32 Identities=19% Similarity=0.445 Sum_probs=26.7
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCC---CeEEEEe
Q 012484 25 KASVCLLNCGPTGSETLKNLVLGGI---GSITVID 56 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl~Gv---~~itlvD 56 (462)
+.+|.+||+|-+|..+++.|...|. .+++++|
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~ 36 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSD 36 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEEC
Confidence 4589999999999999999999985 3466655
No 126
>PRK10537 voltage-gated potassium channel; Provisional
Probab=92.23 E-value=0.64 Score=47.90 Aligned_cols=38 Identities=21% Similarity=0.160 Sum_probs=31.9
Q ss_pred HHHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 20 QAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 20 q~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
+...++.||+|+|.|.+|.++++.|...|. .++++|.|
T Consensus 235 ~~~~~k~HvII~G~g~lg~~v~~~L~~~g~-~vvVId~d 272 (393)
T PRK10537 235 SHMHRKDHFIICGHSPLAINTYLGLRQRGQ-AVTVIVPL 272 (393)
T ss_pred hhcccCCeEEEECCChHHHHHHHHHHHCCC-CEEEEECc
Confidence 334457899999999999999999998886 68888865
No 127
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=92.23 E-value=1.9 Score=40.48 Aligned_cols=29 Identities=21% Similarity=0.335 Sum_probs=25.6
Q ss_pred cEEEEc-CChhHHHHHHHHHHhCCCeEEEEe
Q 012484 27 SVCLLN-CGPTGSETLKNLVLGGIGSITVID 56 (462)
Q Consensus 27 ~VlivG-~g~lG~eiaknLvl~Gv~~itlvD 56 (462)
+|.||| +|.+|+.+++.|+..| .++++++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G-~~V~v~~ 31 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAG-NKIIIGS 31 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCC-CEEEEEE
Confidence 699997 8999999999999999 5677775
No 128
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=92.16 E-value=1.3 Score=37.34 Aligned_cols=90 Identities=18% Similarity=0.172 Sum_probs=50.9
Q ss_pred cEEEEc-CChhHHHHHHHHHHhCCCe-EEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCC----CCeEEEE
Q 012484 27 SVCLLN-CGPTGSETLKNLVLGGIGS-ITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELND----AVKAKFI 100 (462)
Q Consensus 27 ~VlivG-~g~lG~eiaknLvl~Gv~~-itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp----~v~v~~~ 100 (462)
||.|+| .|-+|.++++.|...=--+ +.++... ...|++ +....| .-.+...
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~---------------~~~g~~--------~~~~~~~~~~~~~~~~~ 57 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSS---------------RSAGKP--------LSEVFPHPKGFEDLSVE 57 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEEST---------------TTTTSB--------HHHTTGGGTTTEEEBEE
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeec---------------cccCCe--------eehhccccccccceeEe
Confidence 689999 7889999999998732222 2222211 124442 233333 2222222
Q ss_pred ecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEE
Q 012484 101 EEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFA 148 (462)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~ 148 (462)
+. +.+.+.+.|+|+.|..+... ..+...+.+.|+++|+.
T Consensus 58 ~~--------~~~~~~~~Dvvf~a~~~~~~-~~~~~~~~~~g~~ViD~ 96 (121)
T PF01118_consen 58 DA--------DPEELSDVDVVFLALPHGAS-KELAPKLLKAGIKVIDL 96 (121)
T ss_dssp ET--------SGHHHTTESEEEE-SCHHHH-HHHHHHHHHTTSEEEES
T ss_pred ec--------chhHhhcCCEEEecCchhHH-HHHHHHHhhCCcEEEeC
Confidence 21 22335789999999876444 44555557888877764
No 129
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=92.13 E-value=0.72 Score=45.15 Aligned_cols=30 Identities=13% Similarity=0.134 Sum_probs=27.2
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 27 SVCLLNCGPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 27 ~VlivG~g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
+|.|||+|.+|..+++.|...|. +++++|.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~ 31 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSR 31 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEEC
Confidence 69999999999999999999986 6888875
No 130
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.10 E-value=0.41 Score=47.57 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=29.1
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 25 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
..+|.|+|+|.+|+.++++|...|. .++++|.+
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~-~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGH-RVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 3579999999999999999999996 68888854
No 131
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=91.98 E-value=0.54 Score=47.07 Aligned_cols=33 Identities=30% Similarity=0.261 Sum_probs=28.2
Q ss_pred HHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEE
Q 012484 21 AALEKASVCLLNCGPTGSETLKNLVLGGIGSITV 54 (462)
Q Consensus 21 ~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itl 54 (462)
..+..++|.|+|+|.+|+.+|+.|.-.| ..|.-
T Consensus 158 ~~~~gK~vgilG~G~IG~~ia~rL~~Fg-~~i~y 190 (336)
T KOG0069|consen 158 YDLEGKTVGILGLGRIGKAIAKRLKPFG-CVILY 190 (336)
T ss_pred ccccCCEEEEecCcHHHHHHHHhhhhcc-ceeee
Confidence 5788999999999999999999999977 44443
No 132
>PRK07340 ornithine cyclodeaminase; Validated
Probab=91.91 E-value=0.66 Score=46.11 Aligned_cols=75 Identities=16% Similarity=0.170 Sum_probs=53.2
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHH-hCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEe
Q 012484 23 LEKASVCLLNCGPTGSETLKNLVL-GGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIE 101 (462)
Q Consensus 23 L~~~~VlivG~g~lG~eiaknLvl-~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~ 101 (462)
....+|+|+|+|+.|...++.+.. .|+.++.++|.+ ..|++..++.+...+. .+. .
T Consensus 123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~-------------------~~~a~~~a~~~~~~~~--~~~-~- 179 (304)
T PRK07340 123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRT-------------------AASAAAFCAHARALGP--TAE-P- 179 (304)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCC-------------------HHHHHHHHHHHHhcCC--eeE-E-
Confidence 345889999999999999999974 688999998743 2477777777765432 222 1
Q ss_pred cChhhhhcCCcCCCCCCcEEEEcCCC
Q 012484 102 EYPEALIEMNPPFFSQFTLVVATQLG 127 (462)
Q Consensus 102 ~~~~~~~~~~~~~~~~~dvVi~~~~~ 127 (462)
.+. .+.+.++|+||.|+.+
T Consensus 180 ~~~-------~~av~~aDiVitaT~s 198 (304)
T PRK07340 180 LDG-------EAIPEAVDLVVTATTS 198 (304)
T ss_pred CCH-------HHHhhcCCEEEEccCC
Confidence 111 2235689999988766
No 133
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.89 E-value=0.41 Score=47.08 Aligned_cols=32 Identities=25% Similarity=0.339 Sum_probs=28.8
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 26 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 26 ~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
.+|.|||+|.+|+.+|..|+..|. .++++|.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~ 35 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDIS 35 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCC
Confidence 579999999999999999999997 69999844
No 134
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=91.81 E-value=0.62 Score=45.11 Aligned_cols=91 Identities=13% Similarity=0.156 Sum_probs=54.5
Q ss_pred CcEEEEcC-ChhHHHHHHHHHH-hCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEecC
Q 012484 26 ASVCLLNC-GPTGSETLKNLVL-GGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY 103 (462)
Q Consensus 26 ~~VlivG~-g~lG~eiaknLvl-~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~~ 103 (462)
-+|+|+|+ |.+|..+++.+.. .++.=..++|.+.-. ... . ....+. .. .+
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~---~~~-------------------~---~~~~i~--~~-~d 53 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSP---LVG-------------------Q---GALGVA--IT-DD 53 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcc---ccc-------------------c---CCCCcc--cc-CC
Confidence 37999999 9999999998875 455555556644211 000 0 001111 11 11
Q ss_pred hhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEeeccc
Q 012484 104 PEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGL 153 (462)
Q Consensus 104 ~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~ 153 (462)
.. +.+..+|+||.++.+ .....+...|.++|+|++.+ +.|+
T Consensus 54 l~-------~ll~~~DvVid~t~p-~~~~~~~~~al~~G~~vvig-ttG~ 94 (257)
T PRK00048 54 LE-------AVLADADVLIDFTTP-EATLENLEFALEHGKPLVIG-TTGF 94 (257)
T ss_pred HH-------HhccCCCEEEECCCH-HHHHHHHHHHHHcCCCEEEE-CCCC
Confidence 11 223468999977744 44577788999999998854 5453
No 135
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=91.80 E-value=0.52 Score=46.97 Aligned_cols=31 Identities=32% Similarity=0.515 Sum_probs=28.7
Q ss_pred cEEEEcCChhHHHHHHHHHHhCC-CeEEEEeC
Q 012484 27 SVCLLNCGPTGSETLKNLVLGGI-GSITVIDG 57 (462)
Q Consensus 27 ~VlivG~g~lG~eiaknLvl~Gv-~~itlvD~ 57 (462)
+|.|||+|.+|+.+|-.|+..|+ ..+.++|.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~ 33 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDI 33 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEEC
Confidence 69999999999999999999996 77999984
No 136
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=91.74 E-value=0.28 Score=48.73 Aligned_cols=31 Identities=32% Similarity=0.570 Sum_probs=29.5
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCC-eEEEEe
Q 012484 26 ASVCLLNCGPTGSETLKNLVLGGIG-SITVID 56 (462)
Q Consensus 26 ~~VlivG~g~lG~eiaknLvl~Gv~-~itlvD 56 (462)
.+|.|+|+|.+|+.+|-.|+.-+++ .+.|+|
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiD 32 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLID 32 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEE
Confidence 3799999999999999999999999 999998
No 137
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=91.69 E-value=0.53 Score=47.03 Aligned_cols=33 Identities=24% Similarity=0.346 Sum_probs=28.0
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEe
Q 012484 23 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVID 56 (462)
Q Consensus 23 L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD 56 (462)
|++++|.|||+|.+|..++++|..+|+. +++.+
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~-Viv~~ 33 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLN-VIVGL 33 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCe-EEEEE
Confidence 4678999999999999999999999984 44433
No 138
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=91.65 E-value=0.47 Score=40.78 Aligned_cols=26 Identities=15% Similarity=0.382 Sum_probs=22.2
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCC
Q 012484 24 EKASVCLLNCGPTGSETLKNLVLGGI 49 (462)
Q Consensus 24 ~~~~VlivG~g~lG~eiaknLvl~Gv 49 (462)
.+.+|.|||+|-+|..+++.|...|.
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~ 34 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGH 34 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTS
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCC
Confidence 45789999999999999999999996
No 139
>PRK06197 short chain dehydrogenase; Provisional
Probab=91.64 E-value=0.48 Score=46.79 Aligned_cols=42 Identities=14% Similarity=0.169 Sum_probs=33.5
Q ss_pred cCHHHHHHHhcCcEEEEcC-ChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 15 WGEQGQAALEKASVCLLNC-GPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 15 ~G~~~q~~L~~~~VlivG~-g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
|+......+.+++|+|.|+ ||+|.++++.|+..|. ++++++.
T Consensus 6 ~~~~~~~~~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r 48 (306)
T PRK06197 6 WTAADIPDQSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVR 48 (306)
T ss_pred CCccccccCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeC
Confidence 4554556678889999985 8999999999999997 5777654
No 140
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=91.60 E-value=1.2 Score=40.12 Aligned_cols=96 Identities=16% Similarity=0.153 Sum_probs=57.3
Q ss_pred EEEEcC-ChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEecChhh
Q 012484 28 VCLLNC-GPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPEA 106 (462)
Q Consensus 28 VlivG~-g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~~~~~ 106 (462)
|+|+|+ |.+|..+++.|...| .+++.+= |+ ..|.+ + .+.+++. ..+..+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~----------R~---------~~~~~-------~-~~~~~~~--~~d~~d 50 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTALV----------RS---------PSKAE-------D-SPGVEII--QGDLFD 50 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEE----------SS---------GGGHH-------H-CTTEEEE--ESCTTC
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEEe----------cC---------chhcc-------c-ccccccc--eeeehh
Confidence 789997 889999999999999 5666642 11 11222 1 5555543 332221
Q ss_pred hhcCCcCCCCCCcEEEEcCCC----hHHHHHHHHHHHHcCce-EEEEeeccce
Q 012484 107 LIEMNPPFFSQFTLVVATQLG----EEKMIKLDRICREANVM-LIFARSYGLT 154 (462)
Q Consensus 107 ~~~~~~~~~~~~dvVi~~~~~----~~~~~~l~~~~~~~~ip-~i~~~~~G~~ 154 (462)
.. .-...++++|.||.+..+ ......+-+.|++.+++ +|..++.|.+
T Consensus 51 ~~-~~~~al~~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~s~~~~~ 102 (183)
T PF13460_consen 51 PD-SVKAALKGADAVIHAAGPPPKDVDAAKNIIEAAKKAGVKRVVYLSSAGVY 102 (183)
T ss_dssp HH-HHHHHHTTSSEEEECCHSTTTHHHHHHHHHHHHHHTTSSEEEEEEETTGT
T ss_pred hh-hhhhhhhhcchhhhhhhhhcccccccccccccccccccccceeeeccccC
Confidence 10 011245689999977542 33355667788888874 4445555533
No 141
>PRK07680 late competence protein ComER; Validated
Probab=91.51 E-value=1.2 Score=43.29 Aligned_cols=31 Identities=13% Similarity=0.393 Sum_probs=26.3
Q ss_pred cEEEEcCChhHHHHHHHHHHhCC---CeEEEEeC
Q 012484 27 SVCLLNCGPTGSETLKNLVLGGI---GSITVIDG 57 (462)
Q Consensus 27 ~VlivG~g~lG~eiaknLvl~Gv---~~itlvD~ 57 (462)
+|.|||+|.+|+.++..|...|. ..++++|.
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r 35 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNR 35 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECC
Confidence 58999999999999999999985 45677653
No 142
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=91.36 E-value=0.27 Score=45.69 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=31.8
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 22 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 22 ~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
.|+.++|+|+|+|.+|..+++.|...|. +++++|.+
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~ 60 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADIN 60 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 4788999999999999999999999997 67787744
No 143
>PF05237 MoeZ_MoeB: MoeZ/MoeB domain; InterPro: IPR007901 This putative domain is found in the MoeZ protein and the MoeB protein. The domain has two CXXC motifs that are only partly conserved. MoeZ is necessary for the synthesis of pyridine-2,6-bis(thiocarboxylic acid), a small secreted metabolite that has a high affinity for transition metals, increases iron uptake efficiency by 20% in Pseudomonas stutzeri, has the ability to reduce both soluble and mineral forms of iron, and has antimicrobial activity towards several species of bacteria. MoeB is the molybdopterin synthase activating enzyme in the molybdopterin cofactor biosynthesis pathway. Both these enzymes are members of a superfamily consisting of related but structurally distinct proteins that are members of pathways involved in the transfer of sulphur-containing moieties to metabolites [] and both also contain the UBA/THIF-type NAD/FAD binding fold (IPR000594 from INTERPRO). ; PDB: 1JWA_B 1JW9_B 1JWB_B 1ZKM_D 1ZUD_3 1ZFN_D.
Probab=91.33 E-value=0.19 Score=39.86 Aligned_cols=24 Identities=33% Similarity=0.553 Sum_probs=20.7
Q ss_pred CCcchhHHHHHHHHHHHHHHHHhc
Q 012484 437 AAELHAVAAFIGGVASQEVIKVVF 460 (462)
Q Consensus 437 ~~el~~vaa~~GGiaaQE~iK~i~ 460 (462)
.+-|.|++.++|.+.|+||||+|+
T Consensus 23 ~GVlg~~~giigslqA~eaik~l~ 46 (84)
T PF05237_consen 23 AGVLGPVVGIIGSLQANEAIKLLL 46 (84)
T ss_dssp S-B-HHHHHHHHHHHHHHHHHHHC
T ss_pred cccccchHHHHHHHHHHHHHHHHH
Confidence 467999999999999999999987
No 144
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=91.29 E-value=1.1 Score=43.32 Aligned_cols=23 Identities=9% Similarity=0.226 Sum_probs=21.6
Q ss_pred cEEEEcCChhHHHHHHHHHHhCC
Q 012484 27 SVCLLNCGPTGSETLKNLVLGGI 49 (462)
Q Consensus 27 ~VlivG~g~lG~eiaknLvl~Gv 49 (462)
+|.|||+|.+|..+++.|...|.
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~ 24 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPA 24 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCC
Confidence 69999999999999999999885
No 145
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=91.28 E-value=0.26 Score=49.47 Aligned_cols=37 Identities=19% Similarity=0.165 Sum_probs=33.7
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 22 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 22 ~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
.|.+++|+|||+|-+|..++++|...|++++++....
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt 207 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQ 207 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 4788999999999999999999999999999998533
No 146
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=91.17 E-value=0.26 Score=51.28 Aligned_cols=36 Identities=25% Similarity=0.455 Sum_probs=33.1
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 22 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 22 ~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
.+.+.+|+|+|+|.+|..+++.|...|+.+++++|.
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~r 212 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANR 212 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeC
Confidence 367799999999999999999999999999999874
No 147
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=91.00 E-value=1.8 Score=42.98 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=27.7
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 27 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 27 ~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
+|.|+|+|.+|+.++.+|...|.. ++++|.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~-V~~~~r~ 33 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHD-VTLWARD 33 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCE-EEEEECC
Confidence 699999999999999999999974 8888753
No 148
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.99 E-value=1.2 Score=46.81 Aligned_cols=37 Identities=22% Similarity=0.288 Sum_probs=32.3
Q ss_pred HHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 21 AALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 21 ~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
..+..++|+|+|.|..|..+|+-|...|. .+++.|..
T Consensus 10 ~~~~~~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~ 46 (458)
T PRK01710 10 KFIKNKKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKK 46 (458)
T ss_pred hhhcCCeEEEEcccHHHHHHHHHHHHCCC-EEEEECCC
Confidence 45667899999999999999999999997 68998854
No 149
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=90.98 E-value=0.32 Score=43.92 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=31.0
Q ss_pred HHhcCcEEEEcCChh-HHHHHHHHHHhCCCeEEEEeC
Q 012484 22 ALEKASVCLLNCGPT-GSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 22 ~L~~~~VlivG~g~l-G~eiaknLvl~Gv~~itlvD~ 57 (462)
.|.+++|+|+|.|.+ |..++++|...|+ ++++++.
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r 76 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHS 76 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEEC
Confidence 478899999999985 8889999999999 6998874
No 150
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=90.95 E-value=1 Score=47.93 Aligned_cols=66 Identities=21% Similarity=0.150 Sum_probs=49.2
Q ss_pred HHHHHHHhcCcEEEEcC-ChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCC
Q 012484 17 EQGQAALEKASVCLLNC-GPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAV 95 (462)
Q Consensus 17 ~~~q~~L~~~~VlivG~-g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v 95 (462)
..-+..+.+++|+|-|. |++|+|+++.++..+.+++.++|.|-. +-..+...|++..|..
T Consensus 242 ~~i~~~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~-------------------~~~~i~~el~~~~~~~ 302 (588)
T COG1086 242 ELIGAMLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEY-------------------KLYLIDMELREKFPEL 302 (588)
T ss_pred HHHHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchH-------------------HHHHHHHHHHhhCCCc
Confidence 34567889999999986 558999999999999999999985543 4444455666666655
Q ss_pred eEEEEe
Q 012484 96 KAKFIE 101 (462)
Q Consensus 96 ~v~~~~ 101 (462)
++..+-
T Consensus 303 ~~~~~i 308 (588)
T COG1086 303 KLRFYI 308 (588)
T ss_pred ceEEEe
Confidence 555443
No 151
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=90.82 E-value=0.57 Score=45.94 Aligned_cols=118 Identities=16% Similarity=0.166 Sum_probs=66.9
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEecC--
Q 012484 26 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY-- 103 (462)
Q Consensus 26 ~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~~-- 103 (462)
.+|.+||+|..|.-+|+||+.+|. .++++|.+.-....+-. .-|-.-+...++... .-++-+..+...
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~-~v~v~~r~~~ka~~~~~-------~~Ga~~a~s~~eaa~--~aDvVitmv~~~~~ 70 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGH-EVTVYNRTPEKAAELLA-------AAGATVAASPAEAAA--EADVVITMLPDDAA 70 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCC-EEEEEeCChhhhhHHHH-------HcCCcccCCHHHHHH--hCCEEEEecCCHHH
Confidence 479999999999999999999994 57887754322110000 011111111112222 123444444321
Q ss_pred hhhhhcCCc---CCCCCCcEEE-EcCCChHHHHHHHHHHHHcCceEEEEeeccc
Q 012484 104 PEALIEMNP---PFFSQFTLVV-ATQLGEEKMIKLDRICREANVMLIFARSYGL 153 (462)
Q Consensus 104 ~~~~~~~~~---~~~~~~dvVi-~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~ 153 (462)
...+.-... +..++=.++| +++.+......+.......|..++++-+.|-
T Consensus 71 V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg 124 (286)
T COG2084 71 VRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGG 124 (286)
T ss_pred HHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCC
Confidence 112221111 2233445666 4556667788899999999999999877664
No 152
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=90.80 E-value=0.37 Score=46.36 Aligned_cols=104 Identities=13% Similarity=0.168 Sum_probs=60.4
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHHHh----CC------CeEEEEeCCcc-cccCCCcccccccccccccHHHHHHHHHHH
Q 012484 22 ALEKASVCLLNCGPTGSETLKNLVLG----GI------GSITVIDGSKV-EVGDLGNNFMLDESCVGESKAKSVCAFLQE 90 (462)
Q Consensus 22 ~L~~~~VlivG~g~lG~eiaknLvl~----Gv------~~itlvD~d~v-~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~ 90 (462)
.|++.+|+++|+|+.|.-|++.|+.+ |+ ++|.++|.+-+ .... +++- +.-+...+.
T Consensus 22 ~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r---------~~l~----~~~~~~a~~ 88 (255)
T PF03949_consen 22 KLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDR---------EDLN----PHKKPFARK 88 (255)
T ss_dssp -GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTT---------SSHS----HHHHHHHBS
T ss_pred CHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccC---------ccCC----hhhhhhhcc
Confidence 58999999999999999999999999 99 89999997643 2221 1111 111133334
Q ss_pred hCCCCeEEEEecChhhhhcCCcCCCCCC--cEEEEcC-CChH-HHHHHHHHHHHcCceEEEEe
Q 012484 91 LNDAVKAKFIEEYPEALIEMNPPFFSQF--TLVVATQ-LGEE-KMIKLDRICREANVMLIFAR 149 (462)
Q Consensus 91 lNp~v~v~~~~~~~~~~~~~~~~~~~~~--dvVi~~~-~~~~-~~~~l~~~~~~~~ip~i~~~ 149 (462)
.+|.-.. .... +.++.. |++|.+. .+.. ....+-.++..+..|+|.+-
T Consensus 89 ~~~~~~~----~~L~-------eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~L 140 (255)
T PF03949_consen 89 TNPEKDW----GSLL-------EAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPL 140 (255)
T ss_dssp SSTTT------SSHH-------HHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-
T ss_pred Ccccccc----cCHH-------HHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEEC
Confidence 4443221 1111 223344 7888654 2222 34556667777778877754
No 153
>PLN02206 UDP-glucuronate decarboxylase
Probab=90.80 E-value=1.7 Score=45.68 Aligned_cols=33 Identities=27% Similarity=0.373 Sum_probs=27.1
Q ss_pred hcCcEEEEcC-ChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 24 EKASVCLLNC-GPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 24 ~~~~VlivG~-g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
+..+|+|.|. |-+|+.+++.|...|. +++.+|.
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~-~V~~ld~ 151 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGD-SVIVVDN 151 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcC-EEEEEeC
Confidence 4578999995 7899999999999996 4666664
No 154
>PRK14982 acyl-ACP reductase; Provisional
Probab=90.73 E-value=0.32 Score=48.96 Aligned_cols=36 Identities=25% Similarity=0.422 Sum_probs=31.7
Q ss_pred HHhcCcEEEEcC-ChhHHHHHHHHHH-hCCCeEEEEeC
Q 012484 22 ALEKASVCLLNC-GPTGSETLKNLVL-GGIGSITVIDG 57 (462)
Q Consensus 22 ~L~~~~VlivG~-g~lG~eiaknLvl-~Gv~~itlvD~ 57 (462)
.|++++|+|+|+ |.+|+++++.|.. .|+.++++++.
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R 189 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVAR 189 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcC
Confidence 578899999998 7999999999985 58999999863
No 155
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=90.73 E-value=1.5 Score=44.10 Aligned_cols=32 Identities=19% Similarity=0.122 Sum_probs=25.4
Q ss_pred CcEEEEcC-ChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 26 ASVCLLNC-GPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 26 ~~VlivG~-g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
.+|+|.|+ |-+|+.+++.|...|=-+++.+|.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r 34 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDM 34 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeC
Confidence 36999996 789999999999864246777764
No 156
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.68 E-value=0.34 Score=48.59 Aligned_cols=32 Identities=16% Similarity=0.245 Sum_probs=28.7
Q ss_pred CcEEEEcC-ChhHHHHHHHHHHhCCC------eEEEEeC
Q 012484 26 ASVCLLNC-GPTGSETLKNLVLGGIG------SITVIDG 57 (462)
Q Consensus 26 ~~VlivG~-g~lG~eiaknLvl~Gv~------~itlvD~ 57 (462)
.+|+|+|+ |.+|+.+|-.|+..|+- ++.|+|-
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di 41 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLEL 41 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEec
Confidence 58999999 99999999999999985 5999983
No 157
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=90.67 E-value=0.37 Score=47.12 Aligned_cols=33 Identities=18% Similarity=0.164 Sum_probs=30.5
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 25 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
+++|+|+|+||.+..++-.|...|+.+++|++.
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR 154 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVAR 154 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence 358999999999999999999999999999974
No 158
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=90.66 E-value=0.34 Score=47.66 Aligned_cols=104 Identities=18% Similarity=0.187 Sum_probs=58.2
Q ss_pred cEEEEcC-ChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEecChh
Q 012484 27 SVCLLNC-GPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPE 105 (462)
Q Consensus 27 ~VlivG~-g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~~~~ 105 (462)
||+|+|+ |-+|+.+++.|...|..-+. ++.. ++.-...+.+.+.+.+..|++-++.......
T Consensus 2 riLI~GasG~lG~~l~~~l~~~~~~v~~-~~r~----------------~~dl~d~~~~~~~~~~~~pd~Vin~aa~~~~ 64 (286)
T PF04321_consen 2 RILITGASGFLGSALARALKERGYEVIA-TSRS----------------DLDLTDPEAVAKLLEAFKPDVVINCAAYTNV 64 (286)
T ss_dssp EEEEETTTSHHHHHHHHHHTTTSEEEEE-ESTT----------------CS-TTSHHHHHHHHHHH--SEEEE------H
T ss_pred EEEEECCCCHHHHHHHHHHhhCCCEEEE-eCch----------------hcCCCCHHHHHHHHHHhCCCeEeccceeecH
Confidence 7999995 77999999999987754333 3433 1112234567788888889877665321111
Q ss_pred hhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEeeccceE
Q 012484 106 ALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTG 155 (462)
Q Consensus 106 ~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G 155 (462)
+..+.+++. +...+......|.+.|...++++|+..+...|+
T Consensus 65 ~~ce~~p~~--------a~~iN~~~~~~la~~~~~~~~~li~~STd~VFd 106 (286)
T PF04321_consen 65 DACEKNPEE--------AYAINVDATKNLAEACKERGARLIHISTDYVFD 106 (286)
T ss_dssp HHHHHSHHH--------HHHHHTHHHHHHHHHHHHCT-EEEEEEEGGGS-
T ss_pred HhhhhChhh--------hHHHhhHHHHHHHHHHHHcCCcEEEeeccEEEc
Confidence 111111110 000122334577889999999999998876553
No 159
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=90.59 E-value=0.58 Score=48.71 Aligned_cols=88 Identities=27% Similarity=0.499 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHH-cCCCCCCCC-------------------CCchhhHHHHHHHHHHHHhhcCCCCCCchHHHHHHH
Q 012484 373 GFYILLRAVDRFAAN-YNNYPGEFD-------------------GPMDEDISRLKTTAVSVLNDLGCNGSTLTEDLINEM 432 (462)
Q Consensus 373 ~~~~~l~a~~~F~~~-~gr~P~~~~-------------------~~~~~D~~~l~~~~~~~~~~~~~~~~~i~~~~v~e~ 432 (462)
..+++.+|+.+|.++ +|..|-+.. .....|..++..++.+++++.+.+.+.|+++.|+.|
T Consensus 288 ~fwi~~~alk~F~~~~~g~lPl~G~lPDM~s~t~~Yi~Lq~iY~~ka~~D~~~v~~~v~~~~~~~g~~~~~I~~~~i~~F 367 (425)
T cd01493 288 SFWIMARALKEFVAEENGLLPLPGTLPDMTADTEKYIKLQNIYREKAEKDAAEVEKYVREILKSLGRSPDSISDKEIKLF 367 (425)
T ss_pred hHHHHHHHHHHHHHhcCCCCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 466788999999988 988886542 113468999999999999998887789999999999
Q ss_pred HHhC--------CCcchhHHHHHHHHHHHHHHHHhc
Q 012484 433 CRFG--------AAELHAVAAFIGGVASQEVIKVVF 460 (462)
Q Consensus 433 ~r~~--------~~el~~vaa~~GGiaaQE~iK~i~ 460 (462)
|+.. ..--||+|||+||+|||||||+||
T Consensus 368 Ckna~~l~~i~~~~~~~~~~~~~gg~~aqE~iK~~t 403 (425)
T cd01493 368 CKNAAFLRVIRGRSLEHNISAFMGGIAAQEVIKLIT 403 (425)
T ss_pred HhhHHhhhcccCCcccchHHHHHhHHHHHHHHHHHh
Confidence 9875 223399999999999999999997
No 160
>PTZ00117 malate dehydrogenase; Provisional
Probab=90.57 E-value=0.35 Score=48.47 Aligned_cols=34 Identities=15% Similarity=0.387 Sum_probs=31.5
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 24 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 24 ~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
++.+|.|||+|.+|+.++-.|+..|+..+.|+|-
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di 37 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDV 37 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEEC
Confidence 5679999999999999999999999888999994
No 161
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=90.56 E-value=0.94 Score=49.01 Aligned_cols=34 Identities=29% Similarity=0.411 Sum_probs=30.2
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCc
Q 012484 25 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 59 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~ 59 (462)
+.||+|+|+|.+|.++++.|...|. .++++|.|.
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~ 450 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSR 450 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCC-CEEEEECCH
Confidence 4799999999999999999999997 589998554
No 162
>PTZ00431 pyrroline carboxylate reductase; Provisional
Probab=90.39 E-value=0.9 Score=44.02 Aligned_cols=34 Identities=21% Similarity=0.183 Sum_probs=27.4
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCC---CeEEEEeC
Q 012484 24 EKASVCLLNCGPTGSETLKNLVLGGI---GSITVIDG 57 (462)
Q Consensus 24 ~~~~VlivG~g~lG~eiaknLvl~Gv---~~itlvD~ 57 (462)
.+.+|.|||+|.+|+.+++.|...|. .+++++|.
T Consensus 2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~ 38 (260)
T PTZ00431 2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTP 38 (260)
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECC
Confidence 34689999999999999999999884 23666653
No 163
>cd00704 MDH Malate dehydrogenase. Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.35 E-value=0.38 Score=48.28 Aligned_cols=33 Identities=18% Similarity=0.234 Sum_probs=29.2
Q ss_pred CcEEEEcC-ChhHHHHHHHHHHhCCCe------EEEEeCC
Q 012484 26 ASVCLLNC-GPTGSETLKNLVLGGIGS------ITVIDGS 58 (462)
Q Consensus 26 ~~VlivG~-g~lG~eiaknLvl~Gv~~------itlvD~d 58 (462)
.+|+|+|+ |.+|+.++..|+..|+-. +.|+|-.
T Consensus 1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~ 40 (323)
T cd00704 1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIP 40 (323)
T ss_pred CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecC
Confidence 37999999 999999999999989866 9999853
No 164
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=90.28 E-value=2 Score=41.95 Aligned_cols=31 Identities=10% Similarity=0.210 Sum_probs=26.4
Q ss_pred cEEEEcCChhHHHHHHHHHHhCC---CeEEEEeC
Q 012484 27 SVCLLNCGPTGSETLKNLVLGGI---GSITVIDG 57 (462)
Q Consensus 27 ~VlivG~g~lG~eiaknLvl~Gv---~~itlvD~ 57 (462)
+|.|||+|.+|..+++.|...|. .++.+++.
T Consensus 3 ~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r 36 (277)
T PRK06928 3 KIGFIGYGSMADMIATKLLETEVATPEEIILYSS 36 (277)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcccEEEEeC
Confidence 69999999999999999999983 46777654
No 165
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.27 E-value=0.98 Score=48.10 Aligned_cols=35 Identities=23% Similarity=0.275 Sum_probs=30.7
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 23 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 23 L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
+.+++|+|+|.|+.|..+|+.|...|. +++..|..
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~ 39 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGA-RLRVADTR 39 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCC-EEEEEcCC
Confidence 456789999999999999999999997 68888854
No 166
>PTZ00325 malate dehydrogenase; Provisional
Probab=90.26 E-value=0.52 Score=47.22 Aligned_cols=35 Identities=20% Similarity=0.137 Sum_probs=30.3
Q ss_pred HhcCcEEEEcC-ChhHHHHHHHHHHhCCC-eEEEEeC
Q 012484 23 LEKASVCLLNC-GPTGSETLKNLVLGGIG-SITVIDG 57 (462)
Q Consensus 23 L~~~~VlivG~-g~lG~eiaknLvl~Gv~-~itlvD~ 57 (462)
++..+|.|+|+ |.+|+.++-.|+..|.. .+.|+|-
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di 42 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI 42 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence 45569999998 99999999999987774 7999995
No 167
>PRK09330 cell division protein FtsZ; Validated
Probab=90.19 E-value=2.3 Score=43.66 Aligned_cols=37 Identities=14% Similarity=0.295 Sum_probs=30.6
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHhCCC--eEEEEeCCc
Q 012484 23 LEKASVCLLNCGPTGSETLKNLVLGGIG--SITVIDGSK 59 (462)
Q Consensus 23 L~~~~VlivG~g~lG~eiaknLvl~Gv~--~itlvD~d~ 59 (462)
....+|.|||+||-|+.++.+|+..|+. .+..++.|.
T Consensus 11 ~~~~~IkViGvGG~G~Nav~~m~~~~~~~v~fia~NTD~ 49 (384)
T PRK09330 11 NQGAVIKVIGVGGGGGNAVNRMIEEGIQGVEFIAANTDA 49 (384)
T ss_pred ccCCeEEEEEECCcHHHHHHHHHHcCCCCceEEEEeCcH
Confidence 4467899999999999999999999886 455566655
No 168
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=90.15 E-value=0.4 Score=45.25 Aligned_cols=38 Identities=26% Similarity=0.253 Sum_probs=34.7
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCc
Q 012484 22 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 59 (462)
Q Consensus 22 ~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~ 59 (462)
.|+.++|+|.|.|.+|..+++.|...|..-+.+.|.+-
T Consensus 20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 20 SLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 57889999999999999999999999999999998553
No 169
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=90.14 E-value=0.38 Score=47.90 Aligned_cols=37 Identities=22% Similarity=0.332 Sum_probs=32.7
Q ss_pred HHHHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEe
Q 012484 19 GQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVID 56 (462)
Q Consensus 19 ~q~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD 56 (462)
....|++++|.|||+|.+|..+|+||..+|+ ++++.|
T Consensus 10 ~~~~LkgKtVGIIG~GsIG~amA~nL~d~G~-~ViV~~ 46 (335)
T PRK13403 10 NVELLQGKTVAVIGYGSQGHAQAQNLRDSGV-EVVVGV 46 (335)
T ss_pred ChhhhCcCEEEEEeEcHHHHHHHHHHHHCcC-EEEEEE
Confidence 3568999999999999999999999999999 566665
No 170
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.12 E-value=1.6 Score=45.79 Aligned_cols=33 Identities=21% Similarity=0.294 Sum_probs=29.0
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCc
Q 012484 26 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 59 (462)
Q Consensus 26 ~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~ 59 (462)
++|+|+|.|+.|..+|+.|...|. .+++.|...
T Consensus 1 ~~v~viG~G~sG~s~a~~l~~~G~-~V~~~D~~~ 33 (459)
T PRK02705 1 AIAHVIGLGRSGIAAARLLKAQGW-EVVVSDRND 33 (459)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCC-EEEEECCCC
Confidence 479999999999999999999997 688888543
No 171
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=90.07 E-value=0.86 Score=44.95 Aligned_cols=107 Identities=14% Similarity=0.145 Sum_probs=59.5
Q ss_pred cEEEEcC-ChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEecChh
Q 012484 27 SVCLLNC-GPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPE 105 (462)
Q Consensus 27 ~VlivG~-g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~~~~ 105 (462)
+|+|.|+ |-+|+.+++.|...| +++.+|.... + ...|+- ..+.+.+.+.+..|++-++.......
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~~g--~V~~~~~~~~--------~--~~~Dl~--d~~~~~~~~~~~~~D~Vih~Aa~~~~ 67 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAPLG--NLIALDVHST--------D--YCGDFS--NPEGVAETVRKIRPDVIVNAAAHTAV 67 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhccC--CEEEeccccc--------c--ccCCCC--CHHHHHHHHHhcCCCEEEECCccCCc
Confidence 6999996 789999999999888 5777775321 0 112332 23344555666667655443211000
Q ss_pred hhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEeeccceE
Q 012484 106 ALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGLTG 155 (462)
Q Consensus 106 ~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G 155 (462)
...+.+++. ....+......+.+.|++.++++|..++...||
T Consensus 68 ~~~~~~~~~--------~~~~N~~~~~~l~~aa~~~g~~~v~~Ss~~Vy~ 109 (299)
T PRK09987 68 DKAESEPEF--------AQLLNATSVEAIAKAANEVGAWVVHYSTDYVFP 109 (299)
T ss_pred chhhcCHHH--------HHHHHHHHHHHHHHHHHHcCCeEEEEccceEEC
Confidence 000000000 000122234467788999999999888766654
No 172
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=90.07 E-value=1.3 Score=44.48 Aligned_cols=31 Identities=29% Similarity=0.513 Sum_probs=28.1
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 26 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 26 ~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
.+|+|||+|.+|+.++..|...|. +++++|.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~-~V~~~~r 33 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGA-DVTLIGR 33 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCC-cEEEEec
Confidence 479999999999999999999995 6888885
No 173
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=90.02 E-value=2.5 Score=42.39 Aligned_cols=34 Identities=21% Similarity=0.259 Sum_probs=29.8
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 24 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 24 ~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
...+|+|.|+|++|..++.-+...|..++.++|.
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~ 202 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADV 202 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeC
Confidence 4678999999999999999888999988888763
No 174
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=90.02 E-value=0.95 Score=42.99 Aligned_cols=38 Identities=26% Similarity=0.332 Sum_probs=33.4
Q ss_pred HHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 21 AALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 21 ~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
..|+..+|+|.|.|.+|..+++.|...|..=+.+.|..
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~ 64 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSD 64 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 45789999999999999999999999998777688754
No 175
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=89.95 E-value=0.28 Score=47.19 Aligned_cols=40 Identities=13% Similarity=0.138 Sum_probs=36.2
Q ss_pred HHHhcCcEEEEcCChhHHHHHHHHHHhCCC----------eEEEEeCCcc
Q 012484 21 AALEKASVCLLNCGPTGSETLKNLVLGGIG----------SITVIDGSKV 60 (462)
Q Consensus 21 ~~L~~~~VlivG~g~lG~eiaknLvl~Gv~----------~itlvD~d~v 60 (462)
++|++.+|+++|+|+.|.-|++.|+..|+. +|.++|.+-+
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gl 70 (254)
T cd00762 21 KKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGL 70 (254)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCe
Confidence 468899999999999999999999999997 9999997653
No 176
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=89.94 E-value=0.4 Score=47.26 Aligned_cols=35 Identities=20% Similarity=0.257 Sum_probs=31.7
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 22 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 22 ~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
.|.+++|+|+|+|++|..+++.|...|. +++++|.
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R 182 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALGA-RVFVGAR 182 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeC
Confidence 5678999999999999999999999997 8988874
No 177
>PRK08291 ectoine utilization protein EutC; Validated
Probab=89.92 E-value=0.98 Score=45.44 Aligned_cols=75 Identities=16% Similarity=0.163 Sum_probs=50.7
Q ss_pred cCcEEEEcCChhHHHHHHHHHH-hCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEecC
Q 012484 25 KASVCLLNCGPTGSETLKNLVL-GGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY 103 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl-~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~~ 103 (462)
.++|+|+|+|+.|...+..|.. .|+.++++++.+ ..|++.+++.+++.. .+++.... +
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~-------------------~~~a~~l~~~~~~~~-g~~v~~~~-d 190 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARD-------------------AAKAEAYAADLRAEL-GIPVTVAR-D 190 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCC-------------------HHHHHHHHHHHhhcc-CceEEEeC-C
Confidence 3689999999999999999985 678999998632 236676666665432 23433222 1
Q ss_pred hhhhhcCCcCCCCCCcEEEEcCCC
Q 012484 104 PEALIEMNPPFFSQFTLVVATQLG 127 (462)
Q Consensus 104 ~~~~~~~~~~~~~~~dvVi~~~~~ 127 (462)
. .+.+.++|+||.++.+
T Consensus 191 ~-------~~al~~aDiVi~aT~s 207 (330)
T PRK08291 191 V-------HEAVAGADIIVTTTPS 207 (330)
T ss_pred H-------HHHHccCCEEEEeeCC
Confidence 1 1235578999987754
No 178
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=89.90 E-value=1.8 Score=42.67 Aligned_cols=30 Identities=17% Similarity=0.303 Sum_probs=26.8
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 27 SVCLLNCGPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 27 ~VlivG~g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
+|+|+|+|++|+.++..|+..|. .+++++.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-ceEEEec
Confidence 69999999999999999999985 5888864
No 179
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=89.89 E-value=1.2 Score=43.43 Aligned_cols=31 Identities=19% Similarity=0.349 Sum_probs=24.0
Q ss_pred cEEEEcCChhHHHHHHHHHHhC--CCeEEEEeC
Q 012484 27 SVCLLNCGPTGSETLKNLVLGG--IGSITVIDG 57 (462)
Q Consensus 27 ~VlivG~g~lG~eiaknLvl~G--v~~itlvD~ 57 (462)
+|.|||+|.+|..+++.|...+ +.-+.++|.
T Consensus 3 rIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~ 35 (265)
T PRK13304 3 KIGIVGCGAIASLITKAILSGRINAELYAFYDR 35 (265)
T ss_pred EEEEECccHHHHHHHHHHHcCCCCeEEEEEECC
Confidence 7999999999999999998764 333445553
No 180
>PRK05854 short chain dehydrogenase; Provisional
Probab=89.88 E-value=1.2 Score=44.25 Aligned_cols=34 Identities=12% Similarity=0.129 Sum_probs=28.2
Q ss_pred HHhcCcEEEEc-CChhHHHHHHHHHHhCCCeEEEEe
Q 012484 22 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID 56 (462)
Q Consensus 22 ~L~~~~VlivG-~g~lG~eiaknLvl~Gv~~itlvD 56 (462)
.|++++++|.| .+|+|.++++.|+..|. ++.+++
T Consensus 11 ~l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~ 45 (313)
T PRK05854 11 DLSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPV 45 (313)
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEe
Confidence 46678899998 58899999999999996 577765
No 181
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=89.85 E-value=0.29 Score=48.85 Aligned_cols=43 Identities=19% Similarity=0.281 Sum_probs=34.7
Q ss_pred hcCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 14 IWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 14 l~G~~~q~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
-|.......+..++|.|+|+|.+|.++|+.|...|+ ++..+|.
T Consensus 125 ~w~~~~~~~l~g~tvgIvG~G~IG~~vA~~l~afG~-~V~~~~~ 167 (312)
T PRK15469 125 HWQPLPEYHREDFTIGILGAGVLGSKVAQSLQTWGF-PLRCWSR 167 (312)
T ss_pred CcCCCCCCCcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeC
Confidence 365433346889999999999999999999999998 5777764
No 182
>PRK05442 malate dehydrogenase; Provisional
Probab=89.83 E-value=0.47 Score=47.65 Aligned_cols=32 Identities=16% Similarity=0.262 Sum_probs=28.4
Q ss_pred CcEEEEcC-ChhHHHHHHHHHHhCCC------eEEEEeC
Q 012484 26 ASVCLLNC-GPTGSETLKNLVLGGIG------SITVIDG 57 (462)
Q Consensus 26 ~~VlivG~-g~lG~eiaknLvl~Gv~------~itlvD~ 57 (462)
.+|.|+|+ |.+|+.+|-.|+..|+- ++.|+|-
T Consensus 5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi 43 (326)
T PRK05442 5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEI 43 (326)
T ss_pred cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEec
Confidence 58999998 99999999999998884 5999983
No 183
>PLN02928 oxidoreductase family protein
Probab=89.69 E-value=0.32 Score=49.28 Aligned_cols=42 Identities=26% Similarity=0.265 Sum_probs=34.7
Q ss_pred cCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 15 WGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 15 ~G~~~q~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
|+...-..|.+++|.|+|+|.+|.++|+.|.-.|. +++.+|.
T Consensus 149 w~~~~~~~l~gktvGIiG~G~IG~~vA~~l~afG~-~V~~~dr 190 (347)
T PLN02928 149 LGEPIGDTLFGKTVFILGYGAIGIELAKRLRPFGV-KLLATRR 190 (347)
T ss_pred cccccccCCCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECC
Confidence 65322246899999999999999999999999998 7888875
No 184
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=89.67 E-value=0.42 Score=49.85 Aligned_cols=35 Identities=29% Similarity=0.403 Sum_probs=32.5
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 23 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 23 L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
+.+.+|+|+|+|++|..+++.|...|+.+++++|.
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r 214 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANR 214 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeC
Confidence 67799999999999999999999999999999874
No 185
>PLN00016 RNA-binding protein; Provisional
Probab=89.65 E-value=2.3 Score=43.48 Aligned_cols=116 Identities=19% Similarity=0.199 Sum_probs=66.7
Q ss_pred HHHhcCcEEEE----cC-ChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHh-CCC
Q 012484 21 AALEKASVCLL----NC-GPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQEL-NDA 94 (462)
Q Consensus 21 ~~L~~~~Vliv----G~-g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~l-Np~ 94 (462)
......+|+|+ |+ |-+|+.+++.|...|. .+++++.+.-....+... + . ..+.++ .+.
T Consensus 48 ~~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~-~V~~l~R~~~~~~~~~~~----------~-~----~~~~~l~~~~ 111 (378)
T PLN00016 48 AAVEKKKVLIVNTNSGGHAFIGFYLAKELVKAGH-EVTLFTRGKEPSQKMKKE----------P-F----SRFSELSSAG 111 (378)
T ss_pred cccccceEEEEeccCCCceeEhHHHHHHHHHCCC-EEEEEecCCcchhhhccC----------c-h----hhhhHhhhcC
Confidence 34556789999 85 7799999999999995 688877543211101000 0 0 111122 122
Q ss_pred CeEEEEecChhhhhcCCcCCCCCCcEEEEcCC-ChHHHHHHHHHHHHcCc-eEEEEeeccceEE
Q 012484 95 VKAKFIEEYPEALIEMNPPFFSQFTLVVATQL-GEEKMIKLDRICREANV-MLIFARSYGLTGF 156 (462)
Q Consensus 95 v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~-~~~~~~~l~~~~~~~~i-p~i~~~~~G~~G~ 156 (462)
++ .+..+..++.. .. -..++|+||.+.. .......+-+.|++.++ .||.+++.|.+|.
T Consensus 112 v~--~v~~D~~d~~~-~~-~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~SS~~vyg~ 171 (378)
T PLN00016 112 VK--TVWGDPADVKS-KV-AGAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCSSAGVYKK 171 (378)
T ss_pred ce--EEEecHHHHHh-hh-ccCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEccHhhcCC
Confidence 33 23333322111 00 1247899987643 33445567788988887 6888888887763
No 186
>PRK13243 glyoxylate reductase; Reviewed
Probab=89.60 E-value=0.38 Score=48.52 Aligned_cols=36 Identities=11% Similarity=0.126 Sum_probs=32.1
Q ss_pred HHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 21 AALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 21 ~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
..|.+++|.|||+|.+|.++|+.|...|. ++..+|.
T Consensus 146 ~~L~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~ 181 (333)
T PRK13243 146 YDVYGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSR 181 (333)
T ss_pred cCCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECC
Confidence 36899999999999999999999999997 5777775
No 187
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=89.58 E-value=1.7 Score=42.91 Aligned_cols=114 Identities=13% Similarity=0.120 Sum_probs=63.9
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEecC--h
Q 012484 27 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY--P 104 (462)
Q Consensus 27 ~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~~--~ 104 (462)
+|.+||+|-+|..++.+|+..|. .++++|.+.- .. . +. ..|...+....+.. -..++-+..+... .
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~-~v~v~~~~~~-~~----~-~~---~~g~~~~~s~~~~~--~~advVi~~v~~~~~v 69 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGH-QLHVTTIGPV-AD----E-LL---SLGAVSVETARQVT--EASDIIFIMVPDTPQV 69 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCC-eEEEEeCCHh-HH----H-HH---HcCCeecCCHHHHH--hcCCEEEEeCCChHHH
Confidence 59999999999999999999996 6788875431 11 1 11 12222222222222 1334444443322 1
Q ss_pred hhhhcCC---cCCCCCCcEEEE-cCCChHHHHHHHHHHHHcCceEEEEeecc
Q 012484 105 EALIEMN---PPFFSQFTLVVA-TQLGEEKMIKLDRICREANVMLIFARSYG 152 (462)
Q Consensus 105 ~~~~~~~---~~~~~~~dvVi~-~~~~~~~~~~l~~~~~~~~ip~i~~~~~G 152 (462)
..+.... ......=.+||. ++.+......+.+.+..++..|+++-..|
T Consensus 70 ~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsG 121 (292)
T PRK15059 70 EEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSG 121 (292)
T ss_pred HHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCC
Confidence 1221111 111222345664 44566677788888999998888876544
No 188
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=89.56 E-value=1.3 Score=46.24 Aligned_cols=38 Identities=24% Similarity=0.329 Sum_probs=33.1
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCccc
Q 012484 23 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVE 61 (462)
Q Consensus 23 L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~ 61 (462)
..+.+|+|+|+|..|..+++.|...| ..+++.|.....
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G-~~v~v~D~~~~~ 42 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLG-AEVTVSDDRPAP 42 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCC-CeEEEEcCCCCc
Confidence 34899999999999999999999999 679999866554
No 189
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=89.54 E-value=0.74 Score=45.87 Aligned_cols=32 Identities=22% Similarity=0.263 Sum_probs=28.9
Q ss_pred cEEEEcC-ChhHHHHHHHHHHhCC-CeEEEEeCC
Q 012484 27 SVCLLNC-GPTGSETLKNLVLGGI-GSITVIDGS 58 (462)
Q Consensus 27 ~VlivG~-g~lG~eiaknLvl~Gv-~~itlvD~d 58 (462)
+|.|||+ |.+|+.+|-.|+..|+ .++.|+|-.
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~ 35 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV 35 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC
Confidence 7999999 9999999999999998 579999954
No 190
>PRK06436 glycerate dehydrogenase; Provisional
Probab=89.49 E-value=0.34 Score=48.17 Aligned_cols=43 Identities=19% Similarity=0.156 Sum_probs=34.9
Q ss_pred cCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 15 WGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 15 ~G~~~q~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
|.......|..++|.|+|+|.+|.++|+.|...|+ ++..+|..
T Consensus 112 w~~~~~~~L~gktvgIiG~G~IG~~vA~~l~afG~-~V~~~~r~ 154 (303)
T PRK06436 112 FKQSPTKLLYNKSLGILGYGGIGRRVALLAKAFGM-NIYAYTRS 154 (303)
T ss_pred CCCCCCCCCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCC
Confidence 65433457999999999999999999998877787 67788754
No 191
>PRK06545 prephenate dehydrogenase; Validated
Probab=89.43 E-value=1.5 Score=44.65 Aligned_cols=32 Identities=16% Similarity=0.229 Sum_probs=27.3
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 26 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 26 ~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
.+|+|||+|.+|..+++.|...|. .+.++|.+
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~-~v~i~~~~ 32 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGP-DVFIIGYD 32 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCC-CeEEEEeC
Confidence 369999999999999999999997 56777643
No 192
>PRK13018 cell division protein FtsZ; Provisional
Probab=89.37 E-value=3.5 Score=42.19 Aligned_cols=37 Identities=22% Similarity=0.461 Sum_probs=31.9
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHhCCC--eEEEEeCCc
Q 012484 23 LEKASVCLLNCGPTGSETLKNLVLGGIG--SITVIDGSK 59 (462)
Q Consensus 23 L~~~~VlivG~g~lG~eiaknLvl~Gv~--~itlvD~d~ 59 (462)
..+.+|.|||+||.|+.++.+|...|+. .+..++.|.
T Consensus 26 ~~~~~I~ViGvGGaG~N~v~~m~~~~~~~v~~iaiNTD~ 64 (378)
T PRK13018 26 FGNPKIVVVGCGGAGNNTINRLYEIGIEGAETIAINTDA 64 (378)
T ss_pred cCCCeEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCH
Confidence 4568999999999999999999999986 567777776
No 193
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=89.36 E-value=3.1 Score=41.34 Aligned_cols=34 Identities=9% Similarity=0.319 Sum_probs=28.9
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCC--eEEEEeCCcc
Q 012484 27 SVCLLNCGPTGSETLKNLVLGGIG--SITVIDGSKV 60 (462)
Q Consensus 27 ~VlivG~g~lG~eiaknLvl~Gv~--~itlvD~d~v 60 (462)
+|.|||+||.|+.++..|.+.|+. .+..+|.|.-
T Consensus 2 ~i~viGvGg~G~n~v~~l~~~~~~~~~~~a~ntD~~ 37 (304)
T cd02201 2 KIKVIGVGGGGGNAVNRMIESGLEGVEFIAANTDAQ 37 (304)
T ss_pred eEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCHH
Confidence 689999999999999999999986 4556777663
No 194
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=89.27 E-value=2.8 Score=43.93 Aligned_cols=103 Identities=13% Similarity=0.181 Sum_probs=59.5
Q ss_pred cCcEEEEcC-ChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEecC
Q 012484 25 KASVCLLNC-GPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY 103 (462)
Q Consensus 25 ~~~VlivG~-g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~~ 103 (462)
..+|+|.|. |-+|+.+++.|...|. +++.+|..... +. .+. ..+. -++. ++.+..+
T Consensus 120 ~mkILVTGatGFIGs~Lv~~Ll~~G~-~V~~ldr~~~~-----~~----------~~~----~~~~-~~~~--~~~~~~D 176 (436)
T PLN02166 120 RLRIVVTGGAGFVGSHLVDKLIGRGD-EVIVIDNFFTG-----RK----------ENL----VHLF-GNPR--FELIRHD 176 (436)
T ss_pred CCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCCCc-----cH----------hHh----hhhc-cCCc--eEEEECc
Confidence 357999985 7799999999999986 57777743210 00 000 0111 1222 2233222
Q ss_pred hhhhhcCCcCCCCCCcEEEEcCC---------Ch--------HHHHHHHHHHHHcCceEEEEeeccceEE
Q 012484 104 PEALIEMNPPFFSQFTLVVATQL---------GE--------EKMIKLDRICREANVMLIFARSYGLTGF 156 (462)
Q Consensus 104 ~~~~~~~~~~~~~~~dvVi~~~~---------~~--------~~~~~l~~~~~~~~ip~i~~~~~G~~G~ 156 (462)
+. ...+.++|+||-+.. +. .....+-+.|++++..+|.+++...||.
T Consensus 177 ---i~---~~~~~~~D~ViHlAa~~~~~~~~~~p~~~~~~Nv~gT~nLleaa~~~g~r~V~~SS~~VYg~ 240 (436)
T PLN02166 177 ---VV---EPILLEVDQIYHLACPASPVHYKYNPVKTIKTNVMGTLNMLGLAKRVGARFLLTSTSEVYGD 240 (436)
T ss_pred ---cc---cccccCCCEEEECceeccchhhccCHHHHHHHHHHHHHHHHHHHHHhCCEEEEECcHHHhCC
Confidence 11 123457888883221 10 1124455688888889999988887773
No 195
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=89.26 E-value=1 Score=46.86 Aligned_cols=109 Identities=14% Similarity=0.159 Sum_probs=70.2
Q ss_pred cEEEEcCChhHH-HHHHHHHH----hCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEe
Q 012484 27 SVCLLNCGPTGS-ETLKNLVL----GGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIE 101 (462)
Q Consensus 27 ~VlivG~g~lG~-eiaknLvl----~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~ 101 (462)
+|.|||.|++-+ ++.+.|+. .+++.|+++|-|. +..|.. =...+.+.+.+.++.++++...
T Consensus 2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~--~~rl~~------------v~~~~~~~~~~~~~~~~v~~t~ 67 (419)
T cd05296 2 KLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDE--EEKLEI------------VGALAKRMVKKAGLPIKVHLTT 67 (419)
T ss_pred EEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCCh--HHHHHH------------HHHHHHHHHHhhCCCeEEEEeC
Confidence 799999999854 77888776 5779999999553 222211 1123445666777777766543
Q ss_pred cChhhhhcCCcCCCCCCcEEEEcC--CChHHHHHHHHHHHHcCceEEEEeeccceEEEEE
Q 012484 102 EYPEALIEMNPPFFSQFTLVVATQ--LGEEKMIKLDRICREANVMLIFARSYGLTGFVRI 159 (462)
Q Consensus 102 ~~~~~~~~~~~~~~~~~dvVi~~~--~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~ 159 (462)
.. .+-+.+.|+||.+. ...+.+..-.++..++|+- -..|.|..|..+.
T Consensus 68 d~--------~~al~gadfVi~~~~vg~~~~r~~de~i~~~~Gi~--gqET~G~GG~~~a 117 (419)
T cd05296 68 DR--------REALEGADFVFTQIRVGGLEARALDERIPLKHGVI--GQETTGAGGFAKA 117 (419)
T ss_pred CH--------HHHhCCCCEEEEEEeeCCcchhhhhhhhHHHcCCc--cccCCCcchHHHh
Confidence 21 23467889999764 3334555555677777763 4678887775543
No 196
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=89.17 E-value=2.4 Score=42.95 Aligned_cols=40 Identities=18% Similarity=0.366 Sum_probs=32.2
Q ss_pred HHHHhcCcEEEEcCChhHHHHHHHHHHhCCCeE--EEEeCCc
Q 012484 20 QAALEKASVCLLNCGPTGSETLKNLVLGGIGSI--TVIDGSK 59 (462)
Q Consensus 20 q~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~i--tlvD~d~ 59 (462)
++--.+.+|.|||+||.|+-++.+|.+.|+..+ ..+|.|.
T Consensus 12 ~~~~~~~~i~viGvGg~G~n~v~~l~~~~~~~~~~iainTD~ 53 (349)
T TIGR00065 12 IQPSNKAKIKVIGVGGGGNNTVNRMLEEGVEGVEFIAINTDA 53 (349)
T ss_pred cCcccCCeEEEEEeCCcHHHHHHHHHHcCCCceEEEEEECCH
Confidence 344355789999999999999999999998644 5577765
No 197
>PLN02427 UDP-apiose/xylose synthase
Probab=88.98 E-value=1.9 Score=44.10 Aligned_cols=36 Identities=17% Similarity=0.374 Sum_probs=29.0
Q ss_pred HHhcCcEEEEcC-ChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 22 ALEKASVCLLNC-GPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 22 ~L~~~~VlivG~-g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
.++..+|+|.|+ |-+|+.+++.|+..|--+++.+|.
T Consensus 11 ~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r 47 (386)
T PLN02427 11 PIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDV 47 (386)
T ss_pred cccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEec
Confidence 466678999985 779999999999985346777774
No 198
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=88.97 E-value=1.4 Score=41.88 Aligned_cols=129 Identities=16% Similarity=0.286 Sum_probs=80.1
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEecC---
Q 012484 27 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY--- 103 (462)
Q Consensus 27 ~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~~--- 103 (462)
++.+||+|-.|..++++|...|.. +..+|-+.-....+... |..-+..+.+.+.+|.+- ++.++-..
T Consensus 2 ~iGmiGLGrMG~n~v~rl~~~ghd-vV~yD~n~~av~~~~~~--------ga~~a~sl~el~~~L~~p-r~vWlMvPag~ 71 (300)
T COG1023 2 QIGMIGLGRMGANLVRRLLDGGHD-VVGYDVNQTAVEELKDE--------GATGAASLDELVAKLSAP-RIVWLMVPAGD 71 (300)
T ss_pred cceeeccchhhHHHHHHHHhCCCe-EEEEcCCHHHHHHHHhc--------CCccccCHHHHHHhcCCC-cEEEEEccCCC
Confidence 578999999999999999999975 66667544333333221 222333455666666553 33332211
Q ss_pred -hhhhhcCCcCCCCCCcEEEEcC-CChHHHHHHHHHHHHcCceEEEEeeccc-----eEEEEEEeCCce
Q 012484 104 -PEALIEMNPPFFSQFTLVVATQ-LGEEKMIKLDRICREANVMLIFARSYGL-----TGFVRISVKEHT 165 (462)
Q Consensus 104 -~~~~~~~~~~~~~~~dvVi~~~-~~~~~~~~l~~~~~~~~ip~i~~~~~G~-----~G~v~~~~~~h~ 165 (462)
...+++.-...++.=|+||... .+.....+-.+...++++-|+++++.|- .|+.+..-+++.
T Consensus 72 it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~~G~~lMiGG~~~ 140 (300)
T COG1023 72 ITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAERGYCLMIGGDEE 140 (300)
T ss_pred chHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhhcCceEEecCcHH
Confidence 1223333345678889999764 4445555566778899999999998764 345555544443
No 199
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=88.92 E-value=0.56 Score=45.75 Aligned_cols=40 Identities=20% Similarity=0.371 Sum_probs=35.8
Q ss_pred HHHhcCcEEEEcCChhHHHHHHHHHHh----CC------CeEEEEeCCcc
Q 012484 21 AALEKASVCLLNCGPTGSETLKNLVLG----GI------GSITVIDGSKV 60 (462)
Q Consensus 21 ~~L~~~~VlivG~g~lG~eiaknLvl~----Gv------~~itlvD~d~v 60 (462)
.+|.+.+|+++|+|+.|.-|++.|+.+ |+ ++|.++|.+-+
T Consensus 21 ~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gl 70 (279)
T cd05312 21 KPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGL 70 (279)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCe
Confidence 468899999999999999999999998 99 79999997643
No 200
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=88.62 E-value=0.67 Score=45.98 Aligned_cols=27 Identities=37% Similarity=0.575 Sum_probs=24.8
Q ss_pred EEcCChhHHHHHHHHHHhCCC-eEEEEe
Q 012484 30 LLNCGPTGSETLKNLVLGGIG-SITVID 56 (462)
Q Consensus 30 ivG~g~lG~eiaknLvl~Gv~-~itlvD 56 (462)
|||+|.+|+.+|-.|+..|+. ++.|+|
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~D 28 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLID 28 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEe
Confidence 689999999999999999984 699998
No 201
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.62 E-value=2 Score=45.05 Aligned_cols=35 Identities=17% Similarity=0.316 Sum_probs=30.5
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 23 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 23 L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
+.+++|+|+|.|+.|..+|+.|...|. .+++.|..
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~-~v~~~d~~ 37 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGA-EVAAYDAE 37 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 456799999999999999999999997 58888853
No 202
>PRK09242 tropinone reductase; Provisional
Probab=88.60 E-value=1.7 Score=41.46 Aligned_cols=34 Identities=9% Similarity=0.191 Sum_probs=28.8
Q ss_pred HHhcCcEEEEcC-ChhHHHHHHHHHHhCCCeEEEEe
Q 012484 22 ALEKASVCLLNC-GPTGSETLKNLVLGGIGSITVID 56 (462)
Q Consensus 22 ~L~~~~VlivG~-g~lG~eiaknLvl~Gv~~itlvD 56 (462)
.|++++++|.|+ |++|.++++.|+..|. ++++++
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~ 40 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGA-DVLIVA 40 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEe
Confidence 366789999985 7899999999999997 577776
No 203
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=88.45 E-value=1.3 Score=43.00 Aligned_cols=30 Identities=17% Similarity=0.292 Sum_probs=26.6
Q ss_pred EEEEcC-ChhHHHHHHHHHHhC--C-CeEEEEeC
Q 012484 28 VCLLNC-GPTGSETLKNLVLGG--I-GSITVIDG 57 (462)
Q Consensus 28 VlivG~-g~lG~eiaknLvl~G--v-~~itlvD~ 57 (462)
|.|||+ |.+|..++..|+..| . .+++|+|.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~ 34 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDI 34 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeC
Confidence 689999 889999999999998 4 68999984
No 204
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=88.43 E-value=2.2 Score=44.52 Aligned_cols=108 Identities=16% Similarity=0.115 Sum_probs=69.7
Q ss_pred cEEEEcCChh-HHHHHHHHHH----hCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEe
Q 012484 27 SVCLLNCGPT-GSETLKNLVL----GGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIE 101 (462)
Q Consensus 27 ~VlivG~g~l-G~eiaknLvl----~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~ 101 (462)
+|+|||.|++ +-++++.|.. ..++.|+|+|-|. ..+.. =...+.+...+..+.++++..+
T Consensus 2 KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~---~Rl~~------------v~~l~~~~~~~~g~~~~v~~tt 66 (425)
T cd05197 2 KIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDE---ERLDI------------ILTIAKRYVEEVGADIKFEKTM 66 (425)
T ss_pred EEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCH---HHHHH------------HHHHHHHHHHhhCCCeEEEEeC
Confidence 7999999986 4477888873 4568999999443 21110 1123445566677777776544
Q ss_pred cChhhhhcCCcCCCCCCcEEEEcC--CChHHHHHHHHHHHHcCceEEEEeeccceEEEEE
Q 012484 102 EYPEALIEMNPPFFSQFTLVVATQ--LGEEKMIKLDRICREANVMLIFARSYGLTGFVRI 159 (462)
Q Consensus 102 ~~~~~~~~~~~~~~~~~dvVi~~~--~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~~ 159 (462)
. . .+-++++|.||++. ...+.+..=-++..++|+ +-..|.|..|..+-
T Consensus 67 D-~-------~~Al~gADfVi~~irvGg~~~r~~De~Iplk~G~--~gqeT~G~GG~~~a 116 (425)
T cd05197 67 D-L-------EDAIIDADFVINQFRVGGLTYREKDEQIPLKYGV--IGQETVGPGGTFSG 116 (425)
T ss_pred C-H-------HHHhCCCCEEEEeeecCChHHHHHHHhHHHHcCc--ccccccCcchhhhh
Confidence 2 1 23477899999764 344555555568888886 34678888885543
No 205
>PRK01581 speE spermidine synthase; Validated
Probab=88.33 E-value=2.5 Score=42.96 Aligned_cols=43 Identities=14% Similarity=0.135 Sum_probs=28.3
Q ss_pred CHHHHHHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCc
Q 012484 16 GEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 59 (462)
Q Consensus 16 G~~~q~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~ 59 (462)
...........+||++|+| .|.-+..-|-..++.+++++|-|.
T Consensus 142 hp~m~~h~~PkrVLIIGgG-dG~tlrelLk~~~v~~It~VEIDp 184 (374)
T PRK01581 142 HPIMSKVIDPKRVLILGGG-DGLALREVLKYETVLHVDLVDLDG 184 (374)
T ss_pred HHHHHhCCCCCEEEEECCC-HHHHHHHHHhcCCCCeEEEEeCCH
Confidence 3333345556899999976 555444444445789999998554
No 206
>PLN02366 spermidine synthase
Probab=88.23 E-value=3.4 Score=41.11 Aligned_cols=33 Identities=18% Similarity=0.359 Sum_probs=22.9
Q ss_pred cCcEEEEcCChhHHHHHHHHHH-hCCCeEEEEeCCc
Q 012484 25 KASVCLLNCGPTGSETLKNLVL-GGIGSITVIDGSK 59 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl-~Gv~~itlvD~d~ 59 (462)
..+||+||+|+ |. ++..+++ .++.+++++|-|.
T Consensus 92 pkrVLiIGgG~-G~-~~rellk~~~v~~V~~VEiD~ 125 (308)
T PLN02366 92 PKKVLVVGGGD-GG-VLREIARHSSVEQIDICEIDK 125 (308)
T ss_pred CCeEEEEcCCc-cH-HHHHHHhCCCCCeEEEEECCH
Confidence 58899999975 22 2344444 5789999998543
No 207
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.19 E-value=1.9 Score=45.27 Aligned_cols=32 Identities=25% Similarity=0.391 Sum_probs=28.3
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 25 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
...|+|+|.|+.|..+|+-|...|. +++..|.
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~-~v~~~D~ 37 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGI-PFAVMDS 37 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCC-eEEEEeC
Confidence 4679999999999999999999997 6888884
No 208
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=88.16 E-value=0.82 Score=45.20 Aligned_cols=33 Identities=27% Similarity=0.437 Sum_probs=29.0
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCc
Q 012484 26 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 59 (462)
Q Consensus 26 ~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~ 59 (462)
.+|.|||+|.+|..++.+|+..|. .++++|.+.
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~-~V~v~d~~~ 34 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGH-QLQVFDVNP 34 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCCH
Confidence 379999999999999999999996 688988653
No 209
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=88.10 E-value=0.7 Score=47.14 Aligned_cols=33 Identities=15% Similarity=0.092 Sum_probs=27.6
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCC------CeEEEEe
Q 012484 24 EKASVCLLNCGPTGSETLKNLVLGGI------GSITVID 56 (462)
Q Consensus 24 ~~~~VlivG~g~lG~eiaknLvl~Gv------~~itlvD 56 (462)
...+|+|+|+|+-|+.+|..|+..|. ..++++.
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~ 48 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWV 48 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEE
Confidence 34689999999999999999999884 4677764
No 210
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.09 E-value=2 Score=45.46 Aligned_cols=36 Identities=19% Similarity=0.111 Sum_probs=31.1
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCc
Q 012484 23 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 59 (462)
Q Consensus 23 L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~ 59 (462)
+++++|+|+|+|-.|..+++-|...|.. +++.|.+.
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~-v~~~d~~~ 41 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPA-QALTLFCN 41 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCE-EEEEcCCC
Confidence 4578999999999999999999999987 77777543
No 211
>PRK07063 short chain dehydrogenase; Provisional
Probab=88.04 E-value=1.6 Score=41.70 Aligned_cols=34 Identities=12% Similarity=0.206 Sum_probs=28.7
Q ss_pred HHhcCcEEEEcC-ChhHHHHHHHHHHhCCCeEEEEe
Q 012484 22 ALEKASVCLLNC-GPTGSETLKNLVLGGIGSITVID 56 (462)
Q Consensus 22 ~L~~~~VlivG~-g~lG~eiaknLvl~Gv~~itlvD 56 (462)
+|.+++|+|.|+ ||+|.++++.|+..|.. +.++|
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~-vv~~~ 38 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGAA-VALAD 38 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEe
Confidence 467889999985 78999999999999974 77766
No 212
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=88.01 E-value=0.81 Score=47.14 Aligned_cols=44 Identities=25% Similarity=0.355 Sum_probs=35.2
Q ss_pred cCcEEEEcCChhHHHHHHHHHHh-CCCeEEEEeCCcccccCCCcc
Q 012484 25 KASVCLLNCGPTGSETLKNLVLG-GIGSITVIDGSKVEVGDLGNN 68 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl~-Gv~~itlvD~d~v~~~nl~r~ 68 (462)
...|+|||.|-+|+.+|..|++. |..+++|+|.+.+....-+++
T Consensus 30 ~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~gas~~~ 74 (407)
T TIGR01373 30 TYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTGRN 74 (407)
T ss_pred cCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccCcccccc
Confidence 45699999999999999999985 887899999876644333333
No 213
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=88.01 E-value=2.2 Score=41.62 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=25.2
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHh--CCCeEEEEe
Q 012484 23 LEKASVCLLNCGPTGSETLKNLVLG--GIGSITVID 56 (462)
Q Consensus 23 L~~~~VlivG~g~lG~eiaknLvl~--Gv~~itlvD 56 (462)
+...+|.|||+|.+|..++++|... |+.=..++|
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~d 39 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAV 39 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEEC
Confidence 3457899999999999999999863 443223444
No 214
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=88.00 E-value=1.6 Score=43.67 Aligned_cols=31 Identities=16% Similarity=0.214 Sum_probs=27.1
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 27 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 27 ~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
+|.|+|+|++|+.++..|...| ..+++++.+
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g-~~V~l~~r~ 32 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKK-ISVNLWGRN 32 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCC-CeEEEEecC
Confidence 5999999999999999999999 457888743
No 215
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=87.80 E-value=0.6 Score=45.92 Aligned_cols=33 Identities=24% Similarity=0.348 Sum_probs=27.3
Q ss_pred EEEEc-CChhHHHHHHHHHHhCCCeEEEEeCCcc
Q 012484 28 VCLLN-CGPTGSETLKNLVLGGIGSITVIDGSKV 60 (462)
Q Consensus 28 VlivG-~g~lG~eiaknLvl~Gv~~itlvD~d~v 60 (462)
|+|-| +|++|+|+++.|+..|..++.++|.+--
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~ 34 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDEN 34 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HH
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChh
Confidence 67887 5779999999999999999999996543
No 216
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.78 E-value=1.4 Score=41.64 Aligned_cols=33 Identities=18% Similarity=0.295 Sum_probs=28.9
Q ss_pred HhcCcEEEEcC-ChhHHHHHHHHHHhCCCeEEEEe
Q 012484 23 LEKASVCLLNC-GPTGSETLKNLVLGGIGSITVID 56 (462)
Q Consensus 23 L~~~~VlivG~-g~lG~eiaknLvl~Gv~~itlvD 56 (462)
|++.+++|.|+ |++|..+++.|...|. +++++|
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~ 36 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGA-KLALID 36 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEe
Confidence 56789999996 9999999999999997 577776
No 217
>PRK08818 prephenate dehydrogenase; Provisional
Probab=87.69 E-value=1.8 Score=44.27 Aligned_cols=35 Identities=14% Similarity=0.045 Sum_probs=28.5
Q ss_pred HhcCcEEEEcC-ChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 23 LEKASVCLLNC-GPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 23 L~~~~VlivG~-g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
+.+-+|+|||+ |.+|..+++.|-...-..++.+|.
T Consensus 2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~ 37 (370)
T PRK08818 2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDP 37 (370)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcC
Confidence 35679999999 999999999998654446777875
No 218
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=87.56 E-value=3.2 Score=40.10 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=32.6
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 22 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 22 ~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
.|+.++|+|.|.|.+|+.+++.|...|.+=+.+.|.+
T Consensus 35 ~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~ 71 (254)
T cd05313 35 TLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSK 71 (254)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 4778999999999999999999999998777688743
No 219
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=87.46 E-value=0.77 Score=45.22 Aligned_cols=33 Identities=18% Similarity=0.338 Sum_probs=29.6
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCc
Q 012484 26 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 59 (462)
Q Consensus 26 ~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~ 59 (462)
.+|+|||+|.+|+.+|..|+..|. .++++|.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence 579999999999999999999998 699998543
No 220
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=87.44 E-value=3.6 Score=44.40 Aligned_cols=33 Identities=18% Similarity=0.260 Sum_probs=25.9
Q ss_pred HhcCcEEEEcC-ChhHHHHHHHHHHhCCCeEEEEe
Q 012484 23 LEKASVCLLNC-GPTGSETLKNLVLGGIGSITVID 56 (462)
Q Consensus 23 L~~~~VlivG~-g~lG~eiaknLvl~Gv~~itlvD 56 (462)
..++.|+|.|+ |++|..+++.|+..|. ++++++
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~ 111 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGV 111 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEe
Confidence 34567888885 8999999999999996 466554
No 221
>PLN02240 UDP-glucose 4-epimerase
Probab=87.34 E-value=3.2 Score=41.61 Aligned_cols=33 Identities=33% Similarity=0.494 Sum_probs=28.3
Q ss_pred HhcCcEEEEcC-ChhHHHHHHHHHHhCCCeEEEEe
Q 012484 23 LEKASVCLLNC-GPTGSETLKNLVLGGIGSITVID 56 (462)
Q Consensus 23 L~~~~VlivG~-g~lG~eiaknLvl~Gv~~itlvD 56 (462)
|++++|+|.|+ |.+|+.+++.|...|. +++++|
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~ 36 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGY-KVVVID 36 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEe
Confidence 45689999985 8899999999999995 688876
No 222
>PLN02688 pyrroline-5-carboxylate reductase
Probab=87.21 E-value=3.2 Score=40.05 Aligned_cols=29 Identities=21% Similarity=0.409 Sum_probs=24.6
Q ss_pred cEEEEcCChhHHHHHHHHHHhCC---CeEEEE
Q 012484 27 SVCLLNCGPTGSETLKNLVLGGI---GSITVI 55 (462)
Q Consensus 27 ~VlivG~g~lG~eiaknLvl~Gv---~~itlv 55 (462)
+|.+||+|.+|+.++++|...|. ..++++
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~ 33 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTA 33 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEE
Confidence 69999999999999999999985 245554
No 223
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=87.19 E-value=0.79 Score=45.14 Aligned_cols=33 Identities=21% Similarity=0.279 Sum_probs=29.3
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 25 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
.++|.|||+|.+|+.+|.+|+..|. .++++|.+
T Consensus 4 ~~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~ 36 (292)
T PRK07530 4 IKKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVS 36 (292)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 4689999999999999999999997 68898854
No 224
>PF02134 UBACT: Repeat in ubiquitin-activating (UBA) protein; InterPro: IPR000127 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme is responsible for activating ubiquitin, the first step in ubiquitinylation. The E1 enzyme hydrolyses ATP and adenylates the C-terminal glycine residue of ubiquitin, and then links this residue to the active site cysteine of E1, yielding a ubiquitin-thioester and free AMP. To be fully active, E1 must non-covalently bind to and adenylate a second ubiquitin molecule. The E1 enzyme can then transfer the thioester-linked ubiquitin molecule to a cysteine residue on the ubiquitin-conjugating enzyme, E2, in an ATP-dependent reaction. This domain is found 2 times in each member of the ubiquitin activating enzymes and is located downstream of the active site cysteine [].; GO: 0005524 ATP binding, 0008641 small protein activating enzyme activity, 0006464 protein modification process; PDB: 1Z7L_A 3CMM_A 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H ....
Probab=87.19 E-value=2.8 Score=31.60 Aligned_cols=58 Identities=16% Similarity=0.216 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHHHhc
Q 012484 401 EDISRLKTTAVSVLNDLGCNGSTLTEDLINEMCRFGAAELHAVAAFIGGVASQEVIKVVF 460 (462)
Q Consensus 401 ~D~~~l~~~~~~~~~~~~~~~~~i~~~~v~e~~r~~~~el~~vaa~~GGiaaQE~iK~i~ 460 (462)
...+-+.+.++--...++++ ..+...+++++..---.+.|..|++.|++..|++|++.
T Consensus 8 ~h~~fI~a~anLrA~~f~I~--~~~~~~~~~i~~~iIP~~~~t~~iva~~~~~e~~k~~~ 65 (67)
T PF02134_consen 8 LHLDFIYAAANLRAQNFGIP--PLDREEIKKIAGNIIPAFAPTNAIVAGIAVNELYKLLQ 65 (67)
T ss_dssp HHHHHHHHHHHHHHHHTT-----S-HHHHHHHHTTEE-B-HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCC--cccHHHHHHHhcCcCCCcCCchhHHHHHHHHHHHHHHh
Confidence 34455555555555566665 25666777777333345678888999999999999874
No 225
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=87.18 E-value=0.91 Score=44.72 Aligned_cols=32 Identities=31% Similarity=0.426 Sum_probs=28.0
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 26 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 26 ~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
.+|.|||+|.+|..++++|...|. .++++|.+
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~-~v~~~d~~ 34 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVYDRN 34 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence 479999999999999999999996 57788754
No 226
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=87.11 E-value=0.77 Score=41.90 Aligned_cols=32 Identities=22% Similarity=0.361 Sum_probs=26.8
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCc
Q 012484 27 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 59 (462)
Q Consensus 27 ~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~ 59 (462)
+|.|||+|.+|.-||-.+++.|. +++++|.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECCh
Confidence 68999999999999999999996 599999644
No 227
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=87.09 E-value=3.8 Score=41.55 Aligned_cols=94 Identities=15% Similarity=0.086 Sum_probs=57.8
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEec-C-
Q 012484 26 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE-Y- 103 (462)
Q Consensus 26 ~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~-~- 103 (462)
.+|+|+|+|++|.-.+..+.+.|...+.++|.+. .|.+.+++.. ..-.+..... .
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~-------------------~Rl~~A~~~~----g~~~~~~~~~~~~ 226 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP-------------------ERLELAKEAG----GADVVVNPSEDDA 226 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH-------------------HHHHHHHHhC----CCeEeecCccccH
Confidence 3799999999999999999999999999997432 2333332211 1111000000 0
Q ss_pred hhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCce
Q 012484 104 PEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVM 144 (462)
Q Consensus 104 ~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip 144 (462)
...+.+.. --..+|+||.|..+..+.....+.++..|.-
T Consensus 227 ~~~~~~~t--~g~g~D~vie~~G~~~~~~~ai~~~r~gG~v 265 (350)
T COG1063 227 GAEILELT--GGRGADVVIEAVGSPPALDQALEALRPGGTV 265 (350)
T ss_pred HHHHHHHh--CCCCCCEEEECCCCHHHHHHHHHHhcCCCEE
Confidence 00010000 0136999998888777777777788777764
No 228
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=87.07 E-value=0.94 Score=44.52 Aligned_cols=32 Identities=25% Similarity=0.263 Sum_probs=28.1
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCc
Q 012484 27 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 59 (462)
Q Consensus 27 ~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~ 59 (462)
+|.|||+|.+|+.++.+|...|. .++++|.+.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCCH
Confidence 58999999999999999999996 688887553
No 229
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.06 E-value=2.5 Score=44.17 Aligned_cols=35 Identities=29% Similarity=0.328 Sum_probs=30.5
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 23 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 23 L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
+++++|+|+|.|++|..+|+.|...|. ++++.|.+
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~-~V~~~d~~ 37 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKLGA-NVTVNDGK 37 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 457889999999999999999999997 58888744
No 230
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=87.04 E-value=0.84 Score=45.19 Aligned_cols=35 Identities=26% Similarity=0.307 Sum_probs=31.8
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 23 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 23 L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
+.+++|+|+|.|++|..+++.|...|. +++++|..
T Consensus 150 l~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~ 184 (296)
T PRK08306 150 IHGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARK 184 (296)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 568999999999999999999999997 89998744
No 231
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=86.86 E-value=0.93 Score=45.82 Aligned_cols=29 Identities=17% Similarity=0.116 Sum_probs=25.2
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEe
Q 012484 26 ASVCLLNCGPTGSETLKNLVLGGIGSITVID 56 (462)
Q Consensus 26 ~~VlivG~g~lG~eiaknLvl~Gv~~itlvD 56 (462)
.+|+|+|+|..|+.++..|+..| .++++.
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g--~v~l~~ 36 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG--PTLQWV 36 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC--CEEEEe
Confidence 57999999999999999999998 466654
No 232
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=86.80 E-value=0.95 Score=45.11 Aligned_cols=31 Identities=16% Similarity=0.306 Sum_probs=27.2
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 26 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 26 ~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
.+|.|+|.|+-|+.+|+-|+..| ..++++-.
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng-~~V~lw~r 32 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNG-HEVRLWGR 32 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcC-CeeEEEec
Confidence 58999999999999999999999 66777653
No 233
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.78 E-value=0.89 Score=44.78 Aligned_cols=33 Identities=15% Similarity=0.335 Sum_probs=29.5
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCc
Q 012484 26 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 59 (462)
Q Consensus 26 ~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~ 59 (462)
.+|.|||+|.+|+.+|.+|+++|. .++++|.+.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~ 38 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTE 38 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCH
Confidence 489999999999999999999997 599998543
No 234
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=86.73 E-value=4.7 Score=39.50 Aligned_cols=98 Identities=16% Similarity=0.224 Sum_probs=57.8
Q ss_pred cEEEEcC-ChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEecChh
Q 012484 27 SVCLLNC-GPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYPE 105 (462)
Q Consensus 27 ~VlivG~-g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~~~~ 105 (462)
+|+|.|. |-+|.++.+.|. +-..++-.|...++. .-.+.+.+.+++..|++-|++-.-..-
T Consensus 2 ~iLi~G~~GqLG~~L~~~l~--~~~~v~a~~~~~~Di----------------td~~~v~~~i~~~~PDvVIn~AAyt~v 63 (281)
T COG1091 2 KILITGANGQLGTELRRALP--GEFEVIATDRAELDI----------------TDPDAVLEVIRETRPDVVINAAAYTAV 63 (281)
T ss_pred cEEEEcCCChHHHHHHHHhC--CCceEEeccCccccc----------------cChHHHHHHHHhhCCCEEEECcccccc
Confidence 4899996 559999999988 444555555443222 234566788999999988764321100
Q ss_pred hhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEee
Q 012484 106 ALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARS 150 (462)
Q Consensus 106 ~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~ 150 (462)
+--+.+++ .- -.-+......+.+.|++.|.++|+.+|
T Consensus 64 D~aE~~~e------~A--~~vNa~~~~~lA~aa~~~ga~lVhiST 100 (281)
T COG1091 64 DKAESEPE------LA--FAVNATGAENLARAAAEVGARLVHIST 100 (281)
T ss_pred ccccCCHH------HH--HHhHHHHHHHHHHHHHHhCCeEEEeec
Confidence 00000000 00 001222345677899999999999876
No 235
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=86.66 E-value=0.68 Score=45.56 Aligned_cols=112 Identities=15% Similarity=0.156 Sum_probs=60.8
Q ss_pred EEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEecC--hhhh
Q 012484 30 LLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY--PEAL 107 (462)
Q Consensus 30 ivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~~--~~~~ 107 (462)
+||+|.+|..++++|...|. +++++|.+.-....+.. .|...+....+.++ +.++-+..+... ...+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~-~V~v~dr~~~~~~~l~~--------~g~~~~~s~~~~~~--~advVil~vp~~~~~~~v 69 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGH-PVRVFDLFPDAVEEAVA--------AGAQAAASPAEAAE--GADRVITMLPAGQHVISV 69 (288)
T ss_pred CCcccHhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHH--------cCCeecCCHHHHHh--cCCEEEEeCCChHHHHHH
Confidence 58999999999999999996 68899865322211110 12111111222222 234444433321 1222
Q ss_pred hc---CCcCCCCCCcEEEE-cCCChHHHHHHHHHHHHcCceEEEEeecc
Q 012484 108 IE---MNPPFFSQFTLVVA-TQLGEEKMIKLDRICREANVMLIFARSYG 152 (462)
Q Consensus 108 ~~---~~~~~~~~~dvVi~-~~~~~~~~~~l~~~~~~~~ip~i~~~~~G 152 (462)
.. .-...+..-.+||. ++.+......+.+.+.++|+.++++-..|
T Consensus 70 ~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~G 118 (288)
T TIGR01692 70 YSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSG 118 (288)
T ss_pred HcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEECCCCC
Confidence 21 01122333345554 44555666778888888898888875544
No 236
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=86.63 E-value=0.87 Score=45.71 Aligned_cols=36 Identities=19% Similarity=0.284 Sum_probs=30.7
Q ss_pred HHHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEe
Q 012484 20 QAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVID 56 (462)
Q Consensus 20 q~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD 56 (462)
...|++++|.|||+|.+|..+|++|..+|+ ++.+.+
T Consensus 12 ~~~L~gktIgIIG~GsmG~AlA~~L~~sG~-~Vvv~~ 47 (330)
T PRK05479 12 LSLIKGKKVAIIGYGSQGHAHALNLRDSGV-DVVVGL 47 (330)
T ss_pred hhhhCCCEEEEEeeHHHHHHHHHHHHHCCC-EEEEEE
Confidence 356888999999999999999999999998 455544
No 237
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=86.50 E-value=0.81 Score=49.13 Aligned_cols=34 Identities=12% Similarity=0.193 Sum_probs=30.9
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 23 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 23 L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
+++++|+|+|+||+|..++..|+..|+ ++++++.
T Consensus 377 ~~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~nR 410 (529)
T PLN02520 377 LAGKLFVVIGAGGAGKALAYGAKEKGA-RVVIANR 410 (529)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcC
Confidence 567899999999999999999999999 8999863
No 238
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=86.49 E-value=0.71 Score=46.06 Aligned_cols=36 Identities=11% Similarity=0.122 Sum_probs=31.7
Q ss_pred HHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 21 AALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 21 ~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
..|.+++|.|||+|.+|.++|+-+.-.|. ++..+|+
T Consensus 141 ~~L~gktvGIiG~G~IG~~vA~~~~~fgm-~V~~~d~ 176 (311)
T PRK08410 141 GEIKGKKWGIIGLGTIGKRVAKIAQAFGA-KVVYYST 176 (311)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhcCC-EEEEECC
Confidence 47999999999999999999999987777 5777775
No 239
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=86.49 E-value=0.93 Score=45.63 Aligned_cols=37 Identities=24% Similarity=0.320 Sum_probs=32.5
Q ss_pred HHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 21 AALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 21 ~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
..|++++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~~ 178 (330)
T PRK12480 142 KPVKNMTVAIIGTGRIGAATAKIYAGFGA-TITAYDAY 178 (330)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCC
Confidence 46899999999999999999999999887 68888743
No 240
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=86.39 E-value=0.83 Score=46.30 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=31.2
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcc
Q 012484 25 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKV 60 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v 60 (462)
...|+|||.|.+|+.+|..|++.|. +++|+|.+..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~-~V~lie~~~~ 37 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGL-RVLGLDRFMP 37 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCC-eEEEEecccC
Confidence 4679999999999999999999996 7999997654
No 241
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=86.27 E-value=4.1 Score=33.82 Aligned_cols=87 Identities=16% Similarity=0.243 Sum_probs=50.5
Q ss_pred cEEEEcCChhHHHHHHHHHHhC--CCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEecCh
Q 012484 27 SVCLLNCGPTGSETLKNLVLGG--IGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYP 104 (462)
Q Consensus 27 ~VlivG~g~lG~eiaknLvl~G--v~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~~~ 104 (462)
+|.|||+|..|...+..+...+ +.=..++|.+. .+++.+ .+.. .+. .++ +.
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~-------------------~~~~~~----~~~~-~~~--~~~-~~ 54 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDP-------------------ERAEAF----AEKY-GIP--VYT-DL 54 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSH-------------------HHHHHH----HHHT-TSE--EES-SH
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCH-------------------HHHHHH----HHHh-ccc--chh-HH
Confidence 6899999999999999999873 32233555322 233332 2222 122 222 23
Q ss_pred hhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEE
Q 012484 105 EALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLI 146 (462)
Q Consensus 105 ~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i 146 (462)
+++.+. .+.|+|+.++.+ .....+...|-+.|++++
T Consensus 55 ~~ll~~-----~~~D~V~I~tp~-~~h~~~~~~~l~~g~~v~ 90 (120)
T PF01408_consen 55 EELLAD-----EDVDAVIIATPP-SSHAEIAKKALEAGKHVL 90 (120)
T ss_dssp HHHHHH-----TTESEEEEESSG-GGHHHHHHHHHHTTSEEE
T ss_pred HHHHHh-----hcCCEEEEecCC-cchHHHHHHHHHcCCEEE
Confidence 333221 167888877765 445666677777887644
No 242
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.23 E-value=0.95 Score=44.30 Aligned_cols=32 Identities=16% Similarity=0.359 Sum_probs=29.0
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 26 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 26 ~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
.+|+|||+|.+|+.++..|+..|. .++++|.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~ 35 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDIS 35 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCC
Confidence 579999999999999999999998 79999854
No 243
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.22 E-value=2.5 Score=41.89 Aligned_cols=32 Identities=25% Similarity=0.285 Sum_probs=30.0
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCeEEEEe
Q 012484 25 KASVCLLNCGPTGSETLKNLVLGGIGSITVID 56 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD 56 (462)
.++|+|+|+|++|--...-+--+|..++.++|
T Consensus 170 Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d 201 (354)
T KOG0024|consen 170 GSKVLVLGAGPIGLLTGLVAKAMGASDVVITD 201 (354)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCcEEEee
Confidence 58999999999999999999999999999998
No 244
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=86.12 E-value=3.3 Score=41.72 Aligned_cols=33 Identities=24% Similarity=0.363 Sum_probs=28.7
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 24 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 24 ~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
...+|+|+|+|++|..++..+...|+ ++++++.
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~ 204 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNR 204 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEec
Confidence 56899999999999999999889998 5777764
No 245
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=86.04 E-value=3.8 Score=40.46 Aligned_cols=34 Identities=12% Similarity=0.048 Sum_probs=28.8
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 24 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 24 ~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
...+|+|+|+|++|...+.-+...|...+.++|.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~ 177 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWET 177 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Confidence 4568999999999999998888899988877763
No 246
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=85.97 E-value=1.9 Score=44.29 Aligned_cols=75 Identities=11% Similarity=0.076 Sum_probs=48.7
Q ss_pred CcEEEEcC-ChhHHHHHHHHHHhCCCe------EEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhC-CCC-e
Q 012484 26 ASVCLLNC-GPTGSETLKNLVLGGIGS------ITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELN-DAV-K 96 (462)
Q Consensus 26 ~~VlivG~-g~lG~eiaknLvl~Gv~~------itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lN-p~v-~ 96 (462)
.+|.|+|+ |.+|+.+|-.|+..|+-. ++|+|-| +.+.|++..+.-|...- |.. .
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD-----------------~~~~~a~g~a~DL~d~a~~~~~~ 107 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSE-----------------RSKEALEGVAMELEDSLYPLLRE 107 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccC-----------------ccchhhhHHHHHHHHhhhhhcCc
Confidence 58999999 999999999999999964 5566532 33445555555555543 432 2
Q ss_pred EEEEecChhhhhcCCcCCCCCCcEEEEcC
Q 012484 97 AKFIEEYPEALIEMNPPFFSQFTLVVATQ 125 (462)
Q Consensus 97 v~~~~~~~~~~~~~~~~~~~~~dvVi~~~ 125 (462)
+.+.. .+.+-++++|+||.+.
T Consensus 108 v~i~~--------~~y~~~kdaDIVVitA 128 (387)
T TIGR01757 108 VSIGI--------DPYEVFEDADWALLIG 128 (387)
T ss_pred eEEec--------CCHHHhCCCCEEEECC
Confidence 22111 1223477999999764
No 247
>PRK07062 short chain dehydrogenase; Provisional
Probab=85.95 E-value=3.3 Score=39.65 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=28.5
Q ss_pred HhcCcEEEEcC-ChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 23 LEKASVCLLNC-GPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 23 L~~~~VlivG~-g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
|+++.++|.|+ |++|.++++.|+..|.. +.+++.
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~~-V~~~~r 40 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGAS-VAICGR 40 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeC
Confidence 56788999986 78999999999999984 777663
No 248
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=85.91 E-value=1.1 Score=45.50 Aligned_cols=41 Identities=22% Similarity=0.305 Sum_probs=35.6
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCC
Q 012484 24 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDL 65 (462)
Q Consensus 24 ~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl 65 (462)
.+.+|+|||.|-+|..+|-.|++.|. +++++|.+.+...+-
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~-~V~vie~~~~~~g~s 43 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGA-DVTVLEAGEAGGGAA 43 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCC-EEEEEecCccCCcch
Confidence 46789999999999999999999999 999999887754333
No 249
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.88 E-value=1 Score=44.26 Aligned_cols=33 Identities=15% Similarity=0.313 Sum_probs=29.1
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCc
Q 012484 26 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 59 (462)
Q Consensus 26 ~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~ 59 (462)
++|.|||+|.+|..+|.+|+..|. .++++|.+.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~ 34 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQ 34 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCH
Confidence 479999999999999999999996 588998553
No 250
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=85.85 E-value=6.8 Score=38.10 Aligned_cols=32 Identities=19% Similarity=0.360 Sum_probs=21.7
Q ss_pred cCcEEEEcCChhHHHHHHHHHHh-CCCeEEEEeCC
Q 012484 25 KASVCLLNCGPTGSETLKNLVLG-GIGSITVIDGS 58 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl~-Gv~~itlvD~d 58 (462)
..+|+++|+|. |. +++.+... ++.+++++|-|
T Consensus 73 p~~VL~iG~G~-G~-~~~~ll~~~~~~~v~~veid 105 (270)
T TIGR00417 73 PKHVLVIGGGD-GG-VLREVLKHKSVEKATLVDID 105 (270)
T ss_pred CCEEEEEcCCc-hH-HHHHHHhCCCcceEEEEeCC
Confidence 46999999975 33 34444444 47899999854
No 251
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=85.82 E-value=2.7 Score=40.69 Aligned_cols=108 Identities=8% Similarity=0.084 Sum_probs=58.6
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEE---EeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEec
Q 012484 26 ASVCLLNCGPTGSETLKNLVLGGIGSITV---IDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE 102 (462)
Q Consensus 26 ~~VlivG~g~lG~eiaknLvl~Gv~~itl---vD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~ 102 (462)
.||.|||||.+|..+++.|..-+...+.+ .|.+.-....+ .+..++-.-.+.|....|++-+++-
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~----------~~~~~~~~~l~~ll~~~~DlVVE~A-- 70 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPAL----------AGRVALLDGLPGLLAWRPDLVVEAA-- 70 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHh----------hccCcccCCHHHHhhcCCCEEEECC--
Confidence 58999999999999999986544433433 33222000011 0111111101333345676655542
Q ss_pred ChhhhhcCCcCCCC-CCcEEEEcC---CChHHHHHHHHHHHHcCceE
Q 012484 103 YPEALIEMNPPFFS-QFTLVVATQ---LGEEKMIKLDRICREANVML 145 (462)
Q Consensus 103 ~~~~~~~~~~~~~~-~~dvVi~~~---~~~~~~~~l~~~~~~~~ip~ 145 (462)
.+..+.+..+.+++ +.|+++.+. .+.....++.+.|++++..+
T Consensus 71 ~~~av~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i 117 (267)
T PRK13301 71 GQQAIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEAGGARI 117 (267)
T ss_pred CHHHHHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEE
Confidence 22233222334454 789998653 34456778888898877543
No 252
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=85.82 E-value=1.1 Score=42.22 Aligned_cols=35 Identities=20% Similarity=0.219 Sum_probs=28.9
Q ss_pred HHhcCcEEEEc-CChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 22 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 22 ~L~~~~VlivG-~g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
.+++++|+|.| .|++|..+++.|...|. ++++++.
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r 38 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDI 38 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeC
Confidence 35678899998 68899999999999997 5777654
No 253
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=85.79 E-value=1.1 Score=44.42 Aligned_cols=33 Identities=24% Similarity=0.438 Sum_probs=30.6
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcc
Q 012484 27 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKV 60 (462)
Q Consensus 27 ~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v 60 (462)
.|+|||.|-+|+.+|-.|++.|. +++|+|...+
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~-~V~l~e~~~~ 33 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGH-SVTLLERGDI 33 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTS-EEEEEESSST
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-eEEEEeeccc
Confidence 48999999999999999999999 8999998855
No 254
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=85.77 E-value=1 Score=42.33 Aligned_cols=105 Identities=22% Similarity=0.303 Sum_probs=51.8
Q ss_pred cEEEEcCChhHHHHHHHHHHhC---CCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEecC
Q 012484 27 SVCLLNCGPTGSETLKNLVLGG---IGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY 103 (462)
Q Consensus 27 ~VlivG~g~lG~eiaknLvl~G---v~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~~ 103 (462)
+|.|||||++|..+++- ++-| +.-+.++|.+.-...++.+- ++.... ..|.++-+.+.+-+-...
T Consensus 2 ~vgiVGcGaIG~~l~e~-v~~~~~~~e~v~v~D~~~ek~~~~~~~-------~~~~~~----s~ide~~~~~DlvVEaAS 69 (255)
T COG1712 2 KVGIVGCGAIGKFLLEL-VRDGRVDFELVAVYDRDEEKAKELEAS-------VGRRCV----SDIDELIAEVDLVVEAAS 69 (255)
T ss_pred eEEEEeccHHHHHHHHH-HhcCCcceeEEEEecCCHHHHHHHHhh-------cCCCcc----ccHHHHhhccceeeeeCC
Confidence 68999999999998875 4555 55555666443322222211 111111 112222233333222223
Q ss_pred hhhhhcCCcCCC-CCCcEEEEcCC---ChHHHHHHHHHHHHcCc
Q 012484 104 PEALIEMNPPFF-SQFTLVVATQL---GEEKMIKLDRICREANV 143 (462)
Q Consensus 104 ~~~~~~~~~~~~-~~~dvVi~~~~---~~~~~~~l~~~~~~~~i 143 (462)
++.+.+.-+..+ .+.|++|.+.. ....+.++-+.|+..+-
T Consensus 70 ~~Av~e~~~~~L~~g~d~iV~SVGALad~~l~erl~~lak~~~~ 113 (255)
T COG1712 70 PEAVREYVPKILKAGIDVIVMSVGALADEGLRERLRELAKCGGA 113 (255)
T ss_pred HHHHHHHhHHHHhcCCCEEEEechhccChHHHHHHHHHHhcCCc
Confidence 333322223333 35888886543 23345566666766653
No 255
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=85.76 E-value=1.2 Score=42.87 Aligned_cols=91 Identities=14% Similarity=0.153 Sum_probs=47.2
Q ss_pred chhhhHHhhcCHHHHHHHhcCcEEEEcCChhHHHHHHHHH-HhCCCeEEEEeCCcccccCCCcccccccccccccHHHHH
Q 012484 6 TKYDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLV-LGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSV 84 (462)
Q Consensus 6 ~rYdRQl~l~G~~~q~~L~~~~VlivG~g~lG~eiaknLv-l~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~ 84 (462)
..|.+.+.-++..... +.++|||+|.|+-| - +..|. ..++.+++++|-|.. =.+++
T Consensus 60 ~~y~e~l~h~~~~~~~--~p~~VLiiGgG~G~-~-~~ell~~~~~~~i~~VEiD~~-------------------Vv~~a 116 (246)
T PF01564_consen 60 FIYHEMLVHPPLLLHP--NPKRVLIIGGGDGG-T-ARELLKHPPVESITVVEIDPE-------------------VVELA 116 (246)
T ss_dssp HHHHHHHHHHHHHHSS--ST-EEEEEESTTSH-H-HHHHTTSTT-SEEEEEES-HH-------------------HHHHH
T ss_pred HHHHHHHhhhHhhcCC--CcCceEEEcCCChh-h-hhhhhhcCCcceEEEEecChH-------------------HHHHH
Confidence 3466554433332221 57899999976533 2 44444 455899999984432 22334
Q ss_pred HHHHHH-----hCCCCeEEEEecChhhhhcCCcCCCCCCcEEEE
Q 012484 85 CAFLQE-----LNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVA 123 (462)
Q Consensus 85 ~~~l~~-----lNp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~ 123 (462)
++.+.. -+|.+++ +..+...+.....+- .||+||.
T Consensus 117 ~~~f~~~~~~~~d~r~~i--~~~Dg~~~l~~~~~~--~yDvIi~ 156 (246)
T PF01564_consen 117 RKYFPEFSEGLDDPRVRI--IIGDGRKFLKETQEE--KYDVIIV 156 (246)
T ss_dssp HHHTHHHHTTGGSTTEEE--EESTHHHHHHTSSST---EEEEEE
T ss_pred HHhchhhccccCCCceEE--EEhhhHHHHHhccCC--cccEEEE
Confidence 444433 3566655 444554554433222 7999984
No 256
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=85.75 E-value=3.7 Score=41.50 Aligned_cols=31 Identities=16% Similarity=0.113 Sum_probs=26.4
Q ss_pred cEEEEcCChhHHHHHHHHHHhCC-------CeEEEEeC
Q 012484 27 SVCLLNCGPTGSETLKNLVLGGI-------GSITVIDG 57 (462)
Q Consensus 27 ~VlivG~g~lG~eiaknLvl~Gv-------~~itlvD~ 57 (462)
+|+|+|+|+.|+.+|..|+..|. .+++++..
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~ 38 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVF 38 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEe
Confidence 58999999999999999999883 57777753
No 257
>PRK06487 glycerate dehydrogenase; Provisional
Probab=85.66 E-value=0.84 Score=45.67 Aligned_cols=36 Identities=19% Similarity=0.198 Sum_probs=31.1
Q ss_pred HHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 21 AALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 21 ~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
..|.+++|.|+|+|.+|.++|+-|.-.|+ ++..+|.
T Consensus 144 ~~l~gktvgIiG~G~IG~~vA~~l~~fgm-~V~~~~~ 179 (317)
T PRK06487 144 VELEGKTLGLLGHGELGGAVARLAEAFGM-RVLIGQL 179 (317)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhCCC-EEEEECC
Confidence 36999999999999999999999988887 4666664
No 258
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=85.63 E-value=3.9 Score=42.79 Aligned_cols=106 Identities=17% Similarity=0.172 Sum_probs=68.7
Q ss_pred cEEEEcCChh-HHHHHHHHHH----hCCCeEEEEeCCcccccCCCcccccccccccccHHH-HHHHHHHHhCCCCeEEEE
Q 012484 27 SVCLLNCGPT-GSETLKNLVL----GGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAK-SVCAFLQELNDAVKAKFI 100 (462)
Q Consensus 27 ~VlivG~g~l-G~eiaknLvl----~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~-~~~~~l~~lNp~v~v~~~ 100 (462)
+|+|||+|+. +-++++.|+. .+++.|+|+|-|. ..+. .+. .+++...+.++.++++..
T Consensus 2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~---~rl~-------------~v~~l~~~~~~~~g~~~~v~~T 65 (437)
T cd05298 2 KIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDA---ERQE-------------KVAEAVKILFKENYPEIKFVYT 65 (437)
T ss_pred eEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCH---HHHH-------------HHHHHHHHHHHhhCCCeEEEEE
Confidence 7999999987 3477777764 4578999999443 2121 122 233455566777777654
Q ss_pred ecChhhhhcCCcCCCCCCcEEEEcC--CChHHHHHHHHHHHHcCceEEEEeeccceEEEE
Q 012484 101 EEYPEALIEMNPPFFSQFTLVVATQ--LGEEKMIKLDRICREANVMLIFARSYGLTGFVR 158 (462)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~dvVi~~~--~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~v~ 158 (462)
.. -.+-++++|.||++- ...+.+..=-+++.++|+ +...|.|..|..+
T Consensus 66 td--------r~eAl~gADfVi~~irvGg~~~r~~De~Ip~kyGi--~gqET~G~GG~~~ 115 (437)
T cd05298 66 TD--------PEEAFTDADFVFAQIRVGGYAMREQDEKIPLKHGV--VGQETCGPGGFAY 115 (437)
T ss_pred CC--------HHHHhCCCCEEEEEeeeCCchHHHHHHhHHHHcCc--ceecCccHHHHHH
Confidence 32 123577899999764 344556655678999996 5557878877543
No 259
>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=85.53 E-value=2.6 Score=42.83 Aligned_cols=126 Identities=13% Similarity=0.155 Sum_probs=72.6
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEec-
Q 012484 24 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE- 102 (462)
Q Consensus 24 ~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~- 102 (462)
.++.|-|||++-.|+.+|.|.+.-|.. +.+++.+.-....+-.+---..+-+|.+-.+.....|+. |..-+--+..
T Consensus 2 ~~~~iGviGLaVMG~NLaLNi~~~G~~-VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~--PRkI~lMVkAG 78 (473)
T COG0362 2 MKADIGVIGLAVMGSNLALNIADHGYT-VAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEK--PRKILLMVKAG 78 (473)
T ss_pred CccceeeEehhhhhHHHHHHHHhcCce-EEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcC--CceEEEEEecC
Confidence 457899999999999999999999985 777765443222111110001112344444433333332 4322211211
Q ss_pred C-hhhhhcCCcCCCCCCcEEEEcC-CChHHHHHHHHHHHHcCceEEEEeecc
Q 012484 103 Y-PEALIEMNPPFFSQFTLVVATQ-LGEEKMIKLDRICREANVMLIFARSYG 152 (462)
Q Consensus 103 ~-~~~~~~~~~~~~~~~dvVi~~~-~~~~~~~~l~~~~~~~~ip~i~~~~~G 152 (462)
. .+..++.-..++..=|+||... .......+-++...+.++-||-+++.|
T Consensus 79 ~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSG 130 (473)
T COG0362 79 TPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSG 130 (473)
T ss_pred CcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccc
Confidence 1 1233333345778889999764 333444455667788999999988765
No 260
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=85.49 E-value=1 Score=46.78 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=32.3
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCc
Q 012484 23 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 59 (462)
Q Consensus 23 L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~ 59 (462)
+..++|+|+|+|.+|..+++.|...|+ +++++|.+.
T Consensus 210 l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp 245 (425)
T PRK05476 210 IAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDP 245 (425)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCc
Confidence 578899999999999999999999999 699988544
No 261
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=85.47 E-value=1.1 Score=44.08 Aligned_cols=32 Identities=19% Similarity=0.352 Sum_probs=28.8
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 26 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 26 ~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
++|.|||+|.+|+.+|.+|+.+|. .++++|.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~ 36 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSD 36 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCC
Confidence 579999999999999999999995 78898854
No 262
>PRK06932 glycerate dehydrogenase; Provisional
Probab=85.47 E-value=0.83 Score=45.65 Aligned_cols=35 Identities=11% Similarity=0.161 Sum_probs=30.4
Q ss_pred HHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEe
Q 012484 21 AALEKASVCLLNCGPTGSETLKNLVLGGIGSITVID 56 (462)
Q Consensus 21 ~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD 56 (462)
..|..++|.|+|+|.+|.++|+-|.-.|+. +..+|
T Consensus 143 ~~l~gktvgIiG~G~IG~~va~~l~~fg~~-V~~~~ 177 (314)
T PRK06932 143 TDVRGSTLGVFGKGCLGTEVGRLAQALGMK-VLYAE 177 (314)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhcCCCE-EEEEC
Confidence 469999999999999999999999888884 66665
No 263
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=85.47 E-value=3.8 Score=45.27 Aligned_cols=39 Identities=18% Similarity=0.166 Sum_probs=30.1
Q ss_pred HHHHHhcCcEEEEcC-ChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 19 GQAALEKASVCLLNC-GPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 19 ~q~~L~~~~VlivG~-g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
+-..-++.+|+|.|+ |-+|+.+++.|...|--+++.+|.
T Consensus 309 ~~~~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r 348 (660)
T PRK08125 309 ACSAKRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDI 348 (660)
T ss_pred hhhhhcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeC
Confidence 344566778999995 779999999999864346777774
No 264
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=85.41 E-value=4.6 Score=38.52 Aligned_cols=34 Identities=18% Similarity=0.362 Sum_probs=26.9
Q ss_pred HHHhcCcEEEEcC-ChhHHHHHHHHHHhCCCeEEEE
Q 012484 21 AALEKASVCLLNC-GPTGSETLKNLVLGGIGSITVI 55 (462)
Q Consensus 21 ~~L~~~~VlivG~-g~lG~eiaknLvl~Gv~~itlv 55 (462)
+.....+|+|.|+ |.+|..+++.|...|.. ++.+
T Consensus 13 ~~~~~~~ilItGasG~iG~~l~~~L~~~g~~-V~~~ 47 (251)
T PLN00141 13 ENVKTKTVFVAGATGRTGKRIVEQLLAKGFA-VKAG 47 (251)
T ss_pred ccccCCeEEEECCCcHHHHHHHHHHHhCCCE-EEEE
Confidence 3455689999995 88999999999998864 5443
No 265
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=85.39 E-value=4.5 Score=39.72 Aligned_cols=75 Identities=17% Similarity=0.213 Sum_probs=42.2
Q ss_pred CcEEEEcC--ChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHh-----CCCCeEE
Q 012484 26 ASVCLLNC--GPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQEL-----NDAVKAK 98 (462)
Q Consensus 26 ~~VlivG~--g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~l-----Np~v~v~ 98 (462)
++|+|||. |++.-|++|.+ .+.+++++|-|. .=.+.+++.+-.. .|.+++.
T Consensus 78 k~VLiiGgGdG~tlRevlkh~---~ve~i~~VEID~-------------------~Vi~~ar~~l~~~~~~~~dpRv~i~ 135 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHL---PVERITMVEIDP-------------------AVIELARKYLPEPSGGADDPRVEII 135 (282)
T ss_pred CeEEEECCCccHHHHHHHhcC---CcceEEEEEcCH-------------------HHHHHHHHhccCcccccCCCceEEE
Confidence 49999985 45555555554 488999987332 1233333444332 2555544
Q ss_pred EEecChhhhhcCCcCCCCCCcEEEE-cCCC
Q 012484 99 FIEEYPEALIEMNPPFFSQFTLVVA-TQLG 127 (462)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~dvVi~-~~~~ 127 (462)
-.+..++.....+ .||+||. ++++
T Consensus 136 --i~Dg~~~v~~~~~---~fDvIi~D~tdp 160 (282)
T COG0421 136 --IDDGVEFLRDCEE---KFDVIIVDSTDP 160 (282)
T ss_pred --eccHHHHHHhCCC---cCCEEEEcCCCC
Confidence 3344444443333 7999984 4454
No 266
>PRK06223 malate dehydrogenase; Reviewed
Probab=85.22 E-value=1.2 Score=44.18 Aligned_cols=32 Identities=19% Similarity=0.418 Sum_probs=29.5
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 26 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 26 ~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
.+|.|||+|.+|+-+|..++..|.+.+.|+|.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~ 34 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDI 34 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEEC
Confidence 58999999999999999999998769999985
No 267
>PRK12367 short chain dehydrogenase; Provisional
Probab=85.22 E-value=1.5 Score=41.97 Aligned_cols=39 Identities=15% Similarity=0.230 Sum_probs=33.3
Q ss_pred HHHHHhcCcEEEEcC-ChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 19 GQAALEKASVCLLNC-GPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 19 ~q~~L~~~~VlivG~-g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
.|.+|++++++|.|+ ||+|.++++.|+..|. ++.+++.+
T Consensus 8 ~~~~l~~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~ 47 (245)
T PRK12367 8 AQSTWQGKRIGITGASGALGKALTKAFRAKGA-KVIGLTHS 47 (245)
T ss_pred hHHhhCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 588999999999985 7899999999999997 57776643
No 268
>PRK08655 prephenate dehydrogenase; Provisional
Probab=85.22 E-value=2.3 Score=44.49 Aligned_cols=31 Identities=16% Similarity=0.241 Sum_probs=26.8
Q ss_pred cEEEEc-CChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 27 SVCLLN-CGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 27 ~VlivG-~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
+|+|+| +|.+|..+++.|...|. .++++|.+
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~-~V~v~~r~ 33 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGF-EVIVTGRD 33 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence 699997 89999999999999996 68888743
No 269
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=85.11 E-value=1.2 Score=46.70 Aligned_cols=37 Identities=16% Similarity=0.173 Sum_probs=32.9
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCc
Q 012484 22 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 59 (462)
Q Consensus 22 ~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~ 59 (462)
.|..++|+|+|+|.+|..+|+.|...|. +++++|.+.
T Consensus 251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga-~ViV~e~dp 287 (476)
T PTZ00075 251 MIAGKTVVVCGYGDVGKGCAQALRGFGA-RVVVTEIDP 287 (476)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 5789999999999999999999999998 588887554
No 270
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=84.97 E-value=1.2 Score=46.23 Aligned_cols=35 Identities=14% Similarity=0.200 Sum_probs=31.3
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 23 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 23 L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
+...+|+|+|+|.+|..+++.+...|. +++++|.+
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d 234 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVD 234 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECC
Confidence 467899999999999999999999999 68888754
No 271
>PRK06046 alanine dehydrogenase; Validated
Probab=84.89 E-value=4.1 Score=40.89 Aligned_cols=74 Identities=18% Similarity=0.197 Sum_probs=49.9
Q ss_pred cCcEEEEcCChhHHHHHHHHH-HhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEecC
Q 012484 25 KASVCLLNCGPTGSETLKNLV-LGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY 103 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLv-l~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~~ 103 (462)
..+|.|+|+|..|...+.+|. ..++..+.++|.+. .+++.+++.+.+..+ +.+.... +
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~-------------------~~~~~~~~~~~~~~~-~~v~~~~-~ 187 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTK-------------------SSAEKFVERMSSVVG-CDVTVAE-D 187 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCH-------------------HHHHHHHHHHHhhcC-ceEEEeC-C
Confidence 478999999999999999998 56889999987433 356666666654333 3333322 2
Q ss_pred hhhhhcCCcCCCCCCcEEEEcCCC
Q 012484 104 PEALIEMNPPFFSQFTLVVATQLG 127 (462)
Q Consensus 104 ~~~~~~~~~~~~~~~dvVi~~~~~ 127 (462)
.++ .+. .|+|++|+.+
T Consensus 188 ~~~-------~l~-aDiVv~aTps 203 (326)
T PRK06046 188 IEE-------ACD-CDILVTTTPS 203 (326)
T ss_pred HHH-------Hhh-CCEEEEecCC
Confidence 222 233 8999987755
No 272
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=84.85 E-value=0.89 Score=41.61 Aligned_cols=35 Identities=17% Similarity=0.311 Sum_probs=29.7
Q ss_pred HHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEe
Q 012484 21 AALEKASVCLLNCGPTGSETLKNLVLGGIGSITVID 56 (462)
Q Consensus 21 ~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD 56 (462)
..+++++|+|||.|..|.+++.+|+..| .+++++=
T Consensus 163 ~~~~~k~V~VVG~G~SA~d~a~~l~~~g-~~V~~~~ 197 (203)
T PF13738_consen 163 EDFKGKRVVVVGGGNSAVDIAYALAKAG-KSVTLVT 197 (203)
T ss_dssp GGCTTSEEEEE--SHHHHHHHHHHTTTC-SEEEEEE
T ss_pred hhcCCCcEEEEcChHHHHHHHHHHHhhC-CEEEEEe
Confidence 4577899999999999999999999999 8999873
No 273
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=84.85 E-value=1.2 Score=45.61 Aligned_cols=35 Identities=23% Similarity=0.331 Sum_probs=31.6
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 23 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 23 L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
+..++|+|+|+|.+|..+++.|...|+ +++++|.+
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~ 199 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDIN 199 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECC
Confidence 567889999999999999999999999 69999853
No 274
>PRK07831 short chain dehydrogenase; Provisional
Probab=84.75 E-value=3.3 Score=39.56 Aligned_cols=34 Identities=24% Similarity=0.308 Sum_probs=28.4
Q ss_pred HHhcCcEEEEcC-C-hhHHHHHHHHHHhCCCeEEEEe
Q 012484 22 ALEKASVCLLNC-G-PTGSETLKNLVLGGIGSITVID 56 (462)
Q Consensus 22 ~L~~~~VlivG~-g-~lG~eiaknLvl~Gv~~itlvD 56 (462)
.+.+++++|.|. | |+|..+++.|+..|.. ++++|
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~-V~~~~ 49 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGAR-VVISD 49 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCCE-EEEEe
Confidence 456789999996 5 7999999999999985 77765
No 275
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=84.75 E-value=1.2 Score=45.88 Aligned_cols=33 Identities=27% Similarity=0.453 Sum_probs=30.4
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCc
Q 012484 26 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 59 (462)
Q Consensus 26 ~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~ 59 (462)
++|+|||.|-+|+.+|..|++.|. +++++|.+.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~-~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGY-QVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence 589999999999999999999996 799999875
No 276
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=84.74 E-value=6.6 Score=39.51 Aligned_cols=89 Identities=12% Similarity=0.088 Sum_probs=55.0
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEecCh
Q 012484 25 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYP 104 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~~~ 104 (462)
..+|+|+|+||+|.-.++....+| -+++.+| .+..|.+.+ ++|--+.-+...+.+
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~-------------------~~~~K~e~a----~~lGAd~~i~~~~~~- 221 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMG-AEVIAIT-------------------RSEEKLELA----KKLGADHVINSSDSD- 221 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcC-CeEEEEe-------------------CChHHHHHH----HHhCCcEEEEcCCch-
Confidence 578999999999999999888899 7888887 334455444 334333332221111
Q ss_pred hhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCce
Q 012484 105 EALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVM 144 (462)
Q Consensus 105 ~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip 144 (462)
..+. .-..+|+||.+.. ..+....-+.++..|.-
T Consensus 222 --~~~~---~~~~~d~ii~tv~-~~~~~~~l~~l~~~G~~ 255 (339)
T COG1064 222 --ALEA---VKEIADAIIDTVG-PATLEPSLKALRRGGTL 255 (339)
T ss_pred --hhHH---hHhhCcEEEECCC-hhhHHHHHHHHhcCCEE
Confidence 1110 1112999999887 55555555666666653
No 277
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=84.73 E-value=1.2 Score=45.81 Aligned_cols=35 Identities=20% Similarity=0.253 Sum_probs=31.6
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 22 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 22 ~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
.|.+++|.|||+|.+|..+++.|...|+ ++..+|+
T Consensus 113 ~l~gktvGIIG~G~IG~~va~~l~a~G~-~V~~~Dp 147 (381)
T PRK00257 113 DLAERTYGVVGAGHVGGRLVRVLRGLGW-KVLVCDP 147 (381)
T ss_pred CcCcCEEEEECCCHHHHHHHHHHHHCCC-EEEEECC
Confidence 5889999999999999999999999998 4777775
No 278
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=84.72 E-value=1.9 Score=41.94 Aligned_cols=31 Identities=19% Similarity=0.395 Sum_probs=25.7
Q ss_pred CcEEEEc-CChhHHHHHHHHHH-hCCCeEEEEe
Q 012484 26 ASVCLLN-CGPTGSETLKNLVL-GGIGSITVID 56 (462)
Q Consensus 26 ~~VlivG-~g~lG~eiaknLvl-~Gv~~itlvD 56 (462)
-+|.|+| +|.+|..+++.+.. .++.=+-++|
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d 34 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFE 34 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEe
Confidence 3799999 59999999999985 6777666676
No 279
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=84.68 E-value=7 Score=40.21 Aligned_cols=33 Identities=18% Similarity=0.373 Sum_probs=26.7
Q ss_pred hcCcEEEEcC-ChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 24 EKASVCLLNC-GPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 24 ~~~~VlivG~-g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
...+|+|.|. |.+|..+++.|...|. ++++++.
T Consensus 59 ~~~kVLVtGatG~IG~~l~~~Ll~~G~-~V~~l~R 92 (390)
T PLN02657 59 KDVTVLVVGATGYIGKFVVRELVRRGY-NVVAVAR 92 (390)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEe
Confidence 3458999985 8899999999999996 5766653
No 280
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.61 E-value=3.2 Score=40.71 Aligned_cols=40 Identities=18% Similarity=0.121 Sum_probs=33.9
Q ss_pred CHHHHHHHhcCcEEEEcC-ChhHHHHHHHHHHhCCCeEEEE
Q 012484 16 GEQGQAALEKASVCLLNC-GPTGSETLKNLVLGGIGSITVI 55 (462)
Q Consensus 16 G~~~q~~L~~~~VlivG~-g~lG~eiaknLvl~Gv~~itlv 55 (462)
+.....++.++.|+|-|+ +|+|-++|+.|+..|.+-+.++
T Consensus 3 ~~~~~e~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lva 43 (282)
T KOG1205|consen 3 GNLFMERLAGKVVLITGASSGIGEALAYELAKRGAKLVLVA 43 (282)
T ss_pred ccccHHHhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEee
Confidence 445678999999999996 7899999999999999866654
No 281
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=84.59 E-value=5.2 Score=39.24 Aligned_cols=31 Identities=32% Similarity=0.413 Sum_probs=26.7
Q ss_pred EEEEc-CChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 28 VCLLN-CGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 28 VlivG-~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
|+|.| +|-+|+++++.|...|...+.++|..
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~ 33 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNL 33 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCceEEEecCC
Confidence 78888 58899999999999998778888854
No 282
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=84.52 E-value=2.8 Score=43.85 Aligned_cols=74 Identities=12% Similarity=0.064 Sum_probs=46.9
Q ss_pred CcEEEEcC-ChhHHHHHHHHHHh-------CCC-eEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhC-CCC
Q 012484 26 ASVCLLNC-GPTGSETLKNLVLG-------GIG-SITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELN-DAV 95 (462)
Q Consensus 26 ~~VlivG~-g~lG~eiaknLvl~-------Gv~-~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lN-p~v 95 (462)
.+|.|+|+ |.+|+.+|-.|+.. |+. ++.++| +.+.|++..+.-|+..- |..
T Consensus 101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD-------------------~~~~~a~G~amDL~daa~~~~ 161 (444)
T PLN00112 101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSE-------------------RSKQALEGVAMELEDSLYPLL 161 (444)
T ss_pred eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEc-------------------CCcchhHHHHHHHHHhhhhhc
Confidence 68999999 99999999999988 552 566665 22345555454555433 322
Q ss_pred -eEEEEecChhhhhcCCcCCCCCCcEEEEcCC
Q 012484 96 -KAKFIEEYPEALIEMNPPFFSQFTLVVATQL 126 (462)
Q Consensus 96 -~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~ 126 (462)
++.+.. .+.+-++++|+||.+..
T Consensus 162 ~~v~i~~--------~~ye~~kdaDiVVitAG 185 (444)
T PLN00112 162 REVSIGI--------DPYEVFQDAEWALLIGA 185 (444)
T ss_pred CceEEec--------CCHHHhCcCCEEEECCC
Confidence 222111 12234779999997653
No 283
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=84.49 E-value=1.2 Score=45.58 Aligned_cols=35 Identities=23% Similarity=0.305 Sum_probs=31.5
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 22 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 22 ~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
.|..++|.|||+|.+|+.+|+.|...|+ ++..+|+
T Consensus 113 ~L~gktvGIIG~G~IG~~vA~~l~a~G~-~V~~~dp 147 (378)
T PRK15438 113 SLHDRTVGIVGVGNVGRRLQARLEALGI-KTLLCDP 147 (378)
T ss_pred CcCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECC
Confidence 5889999999999999999999999998 4777775
No 284
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=84.46 E-value=8.5 Score=31.26 Aligned_cols=77 Identities=19% Similarity=0.233 Sum_probs=45.9
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEecCh
Q 012484 25 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYP 104 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~~~ 104 (462)
+.+|+-+|||. |......+-+..-.+++-+|.+. .-.+.+.++..+....-+++.+..+.
T Consensus 2 ~~~vLDlGcG~-G~~~~~l~~~~~~~~v~gvD~s~-------------------~~~~~a~~~~~~~~~~~~i~~~~~d~ 61 (112)
T PF12847_consen 2 GGRVLDLGCGT-GRLSIALARLFPGARVVGVDISP-------------------EMLEIARERAAEEGLSDRITFVQGDA 61 (112)
T ss_dssp TCEEEEETTTT-SHHHHHHHHHHTTSEEEEEESSH-------------------HHHHHHHHHHHHTTTTTTEEEEESCC
T ss_pred CCEEEEEcCcC-CHHHHHHHhcCCCCEEEEEeCCH-------------------HHHHHHHHHHHhcCCCCCeEEEECcc
Confidence 57899999974 44444333344555699988432 13344555664545555566665544
Q ss_pred hhhhcCCcCCCCCCcEEEEcC
Q 012484 105 EALIEMNPPFFSQFTLVVATQ 125 (462)
Q Consensus 105 ~~~~~~~~~~~~~~dvVi~~~ 125 (462)
.. ..+...+||+|++..
T Consensus 62 -~~---~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 62 -EF---DPDFLEPFDLVICSG 78 (112)
T ss_dssp -HG---GTTTSSCEEEEEECS
T ss_pred -cc---CcccCCCCCEEEECC
Confidence 11 234456799999876
No 285
>PRK07478 short chain dehydrogenase; Provisional
Probab=84.39 E-value=2.8 Score=39.86 Aligned_cols=33 Identities=15% Similarity=0.151 Sum_probs=27.7
Q ss_pred HhcCcEEEEcC-ChhHHHHHHHHHHhCCCeEEEEe
Q 012484 23 LEKASVCLLNC-GPTGSETLKNLVLGGIGSITVID 56 (462)
Q Consensus 23 L~~~~VlivG~-g~lG~eiaknLvl~Gv~~itlvD 56 (462)
+++++++|.|+ ||+|.++++.|+..|. ++.+++
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~ 37 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGA-KVVVGA 37 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEe
Confidence 56678999985 7899999999999998 577765
No 286
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=84.33 E-value=1.3 Score=44.06 Aligned_cols=33 Identities=18% Similarity=0.276 Sum_probs=29.4
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCc
Q 012484 26 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 59 (462)
Q Consensus 26 ~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~ 59 (462)
.+|.|||+|.+|+.++.+|...|. +++++|.+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGH-EVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCC-eeEEEeCCH
Confidence 369999999999999999999997 699998653
No 287
>PRK08374 homoserine dehydrogenase; Provisional
Probab=84.33 E-value=5.9 Score=39.98 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=19.3
Q ss_pred CcEEEEcCChhHHHHHHHHHH
Q 012484 26 ASVCLLNCGPTGSETLKNLVL 46 (462)
Q Consensus 26 ~~VlivG~g~lG~eiaknLvl 46 (462)
-+|.|+|+|.+|+.+++.|..
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~ 23 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAE 23 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHH
Confidence 589999999999999999876
No 288
>KOG0409 consensus Predicted dehydrogenase [General function prediction only]
Probab=84.28 E-value=2.6 Score=41.41 Aligned_cols=118 Identities=16% Similarity=0.211 Sum_probs=65.6
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEecC-
Q 012484 25 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY- 103 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~~- 103 (462)
..+|-.||+|-.|+.+++||+.+|.+ +|++|.+.-....+.. ....+..+=+|++ -..++-+..+...
T Consensus 35 ~~~iGFIGLG~MG~~M~~nLik~G~k-VtV~dr~~~k~~~f~~----~Ga~v~~sPaeVa------e~sDvvitmv~~~~ 103 (327)
T KOG0409|consen 35 KTRIGFIGLGNMGSAMVSNLIKAGYK-VTVYDRTKDKCKEFQE----AGARVANSPAEVA------EDSDVVITMVPNPK 103 (327)
T ss_pred cceeeEEeeccchHHHHHHHHHcCCE-EEEEeCcHHHHHHHHH----hchhhhCCHHHHH------hhcCEEEEEcCChH
Confidence 68899999999999999999999985 8999833321111100 0001111111111 1234444444321
Q ss_pred -hhhhhcCCcCCCC-----CCcEEEEcCCChHHHHHHHHHHHHcCceEEEEeeccc
Q 012484 104 -PEALIEMNPPFFS-----QFTLVVATQLGEEKMIKLDRICREANVMLIFARSYGL 153 (462)
Q Consensus 104 -~~~~~~~~~~~~~-----~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~ 153 (462)
..++.......++ +...|-.++-+......|.+.....+..+|++-+.|-
T Consensus 104 ~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~~vDAPVSGg 159 (327)
T KOG0409|consen 104 DVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGRFVDAPVSGG 159 (327)
T ss_pred hhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCeEEeccccCC
Confidence 1111111112222 2222334555557778899999998988888877663
No 289
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=84.27 E-value=1 Score=46.10 Aligned_cols=40 Identities=23% Similarity=0.381 Sum_probs=36.6
Q ss_pred HHHhcCcEEEEcCChhHHHHHHHHHHhCCC--eEEEEeCCcc
Q 012484 21 AALEKASVCLLNCGPTGSETLKNLVLGGIG--SITVIDGSKV 60 (462)
Q Consensus 21 ~~L~~~~VlivG~g~lG~eiaknLvl~Gv~--~itlvD~d~v 60 (462)
++|+..+|++.|+|+.|..+++.|+.+|+. +|+++|..-+
T Consensus 195 k~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~ 236 (432)
T COG0281 195 KKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGL 236 (432)
T ss_pred CCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCc
Confidence 478899999999999999999999999998 9999997644
No 290
>PRK15076 alpha-galactosidase; Provisional
Probab=84.10 E-value=4.4 Score=42.39 Aligned_cols=110 Identities=13% Similarity=0.166 Sum_probs=60.4
Q ss_pred CcEEEEcCChhHHHHHH--HHH-HhCC--CeEEEEeCCcccccCCCcccccccccccccHHHH-HHHHHHHhCCCCeEEE
Q 012484 26 ASVCLLNCGPTGSETLK--NLV-LGGI--GSITVIDGSKVEVGDLGNNFMLDESCVGESKAKS-VCAFLQELNDAVKAKF 99 (462)
Q Consensus 26 ~~VlivG~g~lG~eiak--nLv-l~Gv--~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~-~~~~l~~lNp~v~v~~ 99 (462)
.+|.|||+|++|...+- .++ ..+. ..++|+|-+. .-+ .++.+ +.+.+....+.++++.
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~---er~-------------~~~~~l~~~~~~~~~~~~~i~~ 65 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDP---ERL-------------EESEIVARKLAESLGASAKITA 65 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCH---HHH-------------HHHHHHHHHHHHhcCCCeEEEE
Confidence 47999999998855444 554 2333 3899998332 100 00222 2334444555566654
Q ss_pred EecChhhhhcCCcCCCCCCcEEEEcCCC--hHHHHHHH-HHHHHcCceEEEEeeccceEEEEE
Q 012484 100 IEEYPEALIEMNPPFFSQFTLVVATQLG--EEKMIKLD-RICREANVMLIFARSYGLTGFVRI 159 (462)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~dvVi~~~~~--~~~~~~l~-~~~~~~~ip~i~~~~~G~~G~v~~ 159 (462)
.+ +. .+.++++|+||.+... .......+ ++..++|+--=...+.|..|..+.
T Consensus 66 tt-D~-------~eal~dADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~ 120 (431)
T PRK15076 66 TT-DR-------REALQGADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRA 120 (431)
T ss_pred EC-CH-------HHHhCCCCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhh
Confidence 32 11 1335689999976543 22232233 477788875212367777775544
No 291
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=84.00 E-value=1.4 Score=44.78 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=29.6
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcc
Q 012484 27 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKV 60 (462)
Q Consensus 27 ~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v 60 (462)
.|+|||.|.+|+.+|..|++.|. +++|+|....
T Consensus 2 dvvIIGaGi~G~s~A~~La~~g~-~V~l~e~~~~ 34 (380)
T TIGR01377 2 DVIVVGAGIMGCFAAYHLAKHGK-KTLLLEQFDL 34 (380)
T ss_pred cEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCC
Confidence 58999999999999999999996 6999998543
No 292
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.95 E-value=4.8 Score=41.98 Aligned_cols=35 Identities=23% Similarity=0.375 Sum_probs=30.2
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 23 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 23 L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
+.+++|+|+|.|+.|..+++.|...|. +++..|..
T Consensus 4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~-~v~~~D~~ 38 (438)
T PRK03806 4 YQGKKVVIIGLGLTGLSCVDFFLARGV-TPRVIDTR 38 (438)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCC
Confidence 456789999999999999999999997 68888854
No 293
>PRK07574 formate dehydrogenase; Provisional
Probab=83.90 E-value=1.2 Score=45.75 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=31.7
Q ss_pred HHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 21 AALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 21 ~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
..|..++|.|||+|.+|.++|+.|...|+ ++..+|.
T Consensus 188 ~~L~gktVGIvG~G~IG~~vA~~l~~fG~-~V~~~dr 223 (385)
T PRK07574 188 YDLEGMTVGIVGAGRIGLAVLRRLKPFDV-KLHYTDR 223 (385)
T ss_pred eecCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECC
Confidence 45899999999999999999999999998 5777774
No 294
>PRK06199 ornithine cyclodeaminase; Validated
Probab=83.87 E-value=3.8 Score=42.07 Aligned_cols=81 Identities=19% Similarity=0.262 Sum_probs=56.9
Q ss_pred HHHHh---cCcEEEEcCChhHHHHHHHHHH--hCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCC
Q 012484 20 QAALE---KASVCLLNCGPTGSETLKNLVL--GGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDA 94 (462)
Q Consensus 20 q~~L~---~~~VlivG~g~lG~eiaknLvl--~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~ 94 (462)
.+.|. .++++|+|+|..+..-+..+.. .++.++.++|.+ ..|++..++.+.+..+.
T Consensus 147 a~~LAr~da~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~-------------------~~~a~~f~~~~~~~~~~ 207 (379)
T PRK06199 147 ARHLARKDSKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRG-------------------QKSLDSFATWVAETYPQ 207 (379)
T ss_pred HHHhccCCCCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCC-------------------HHHHHHHHHHHHHhcCC
Confidence 34554 4789999999999999988865 468999998733 34778888888876654
Q ss_pred C-eEEEEecChhhhhcCCcCCCCCCcEEEEcCCC
Q 012484 95 V-KAKFIEEYPEALIEMNPPFFSQFTLVVATQLG 127 (462)
Q Consensus 95 v-~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~ 127 (462)
+ ++.... +.+ +.+.++|||++|+.+
T Consensus 208 ~~~v~~~~-s~~-------eav~~ADIVvtaT~s 233 (379)
T PRK06199 208 ITNVEVVD-SIE-------EVVRGSDIVTYCNSG 233 (379)
T ss_pred CceEEEeC-CHH-------HHHcCCCEEEEccCC
Confidence 4 354432 222 335689999977643
No 295
>PRK06139 short chain dehydrogenase; Provisional
Probab=83.83 E-value=2.1 Score=42.99 Aligned_cols=35 Identities=17% Similarity=0.232 Sum_probs=29.3
Q ss_pred HHhcCcEEEEcC-ChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 22 ALEKASVCLLNC-GPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 22 ~L~~~~VlivG~-g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
.+.+++|+|.|+ ||+|.++++.|+..|.. +.+++.
T Consensus 4 ~l~~k~vlITGAs~GIG~aia~~la~~G~~-Vvl~~R 39 (330)
T PRK06139 4 PLHGAVVVITGASSGIGQATAEAFARRGAR-LVLAAR 39 (330)
T ss_pred CCCCCEEEEcCCCCHHHHHHHHHHHHCCCE-EEEEEC
Confidence 466789999996 89999999999999974 777763
No 296
>PRK06270 homoserine dehydrogenase; Provisional
Probab=83.80 E-value=6.7 Score=39.64 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=19.8
Q ss_pred CcEEEEcCChhHHHHHHHHHHh
Q 012484 26 ASVCLLNCGPTGSETLKNLVLG 47 (462)
Q Consensus 26 ~~VlivG~g~lG~eiaknLvl~ 47 (462)
-+|.|+|+|.+|..+++.|...
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~ 24 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEK 24 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHh
Confidence 5899999999999999999765
No 297
>PRK05867 short chain dehydrogenase; Provisional
Probab=83.78 E-value=2.7 Score=39.97 Aligned_cols=33 Identities=12% Similarity=0.171 Sum_probs=27.8
Q ss_pred HhcCcEEEEcC-ChhHHHHHHHHHHhCCCeEEEEe
Q 012484 23 LEKASVCLLNC-GPTGSETLKNLVLGGIGSITVID 56 (462)
Q Consensus 23 L~~~~VlivG~-g~lG~eiaknLvl~Gv~~itlvD 56 (462)
+++++++|.|+ |++|.++++.|+..|. ++.+++
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~ 40 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGA-QVAIAA 40 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEc
Confidence 56788999986 8899999999999997 466654
No 298
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=83.68 E-value=1.5 Score=43.61 Aligned_cols=32 Identities=16% Similarity=0.305 Sum_probs=29.7
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 26 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 26 ~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
.+|.|||+|-+|+-+|-.|+..|.+.++++|.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi 33 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDV 33 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 47999999999999999999999878999995
No 299
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=83.68 E-value=9.9 Score=36.80 Aligned_cols=91 Identities=14% Similarity=0.230 Sum_probs=53.4
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccc----cccccccHHHHHHHHHHHhCCCCeEEEEec
Q 012484 27 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLD----ESCVGESKAKSVCAFLQELNDAVKAKFIEE 102 (462)
Q Consensus 27 ~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~----~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~ 102 (462)
+|+|+|..+-|..+++.|...|..-+..+= ++.+...+.. .--.|....+.+++.+++
T Consensus 2 ~ILvlGGT~egr~la~~L~~~g~~v~~s~~------t~~~~~~~~~~g~~~v~~g~l~~~~l~~~l~~------------ 63 (256)
T TIGR00715 2 TVLLMGGTVDSRAIAKGLIAQGIEILVTVT------TSEGKHLYPIHQALTVHTGALDPQELREFLKR------------ 63 (256)
T ss_pred eEEEEechHHHHHHHHHHHhCCCeEEEEEc------cCCccccccccCCceEEECCCCHHHHHHHHHh------------
Confidence 799999988899999999999854332221 1111111000 000122222222222221
Q ss_pred ChhhhhcCCcCCCCCCcEEEEcCCChHH--HHHHHHHHHHcCceEEEE
Q 012484 103 YPEALIEMNPPFFSQFTLVVATQLGEEK--MIKLDRICREANVMLIFA 148 (462)
Q Consensus 103 ~~~~~~~~~~~~~~~~dvVi~~~~~~~~--~~~l~~~~~~~~ip~i~~ 148 (462)
.+.++||+++.+... ...+.+.|++.++|++-.
T Consensus 64 -------------~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 64 -------------HSIDILVDATHPFAAQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred -------------cCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 147789999888775 446678999999997753
No 300
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=83.59 E-value=4 Score=33.02 Aligned_cols=72 Identities=15% Similarity=0.206 Sum_probs=44.4
Q ss_pred cHHHHHHHHHHHhCCCCeEEEEecChhhhhcC---CcCCCCCCcEEEEcCC--ChHHHHHHHHHHHHcCceEEEEeeccc
Q 012484 79 SKAKSVCAFLQELNDAVKAKFIEEYPEALIEM---NPPFFSQFTLVVATQL--GEEKMIKLDRICREANVMLIFARSYGL 153 (462)
Q Consensus 79 ~Ka~~~~~~l~~lNp~v~v~~~~~~~~~~~~~---~~~~~~~~dvVi~~~~--~~~~~~~l~~~~~~~~ip~i~~~~~G~ 153 (462)
.+....++.+.+.+= +...+ ......... -+..+.+.|+||+.++ +......+-+.|+++++|++.+.+.|.
T Consensus 10 ~~~~~~~~~~~~~G~--~~~~h-g~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~ 86 (97)
T PF10087_consen 10 DRERRYKRILEKYGG--KLIHH-GRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGV 86 (97)
T ss_pred ccHHHHHHHHHHcCC--EEEEE-ecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCH
Confidence 445556667776543 33333 101111111 1345678899986543 556688889999999999999887664
No 301
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=83.56 E-value=1.4 Score=45.76 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=28.8
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 25 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
..+|+|||.|-+|+++|-.|++.|+. ++|+|.
T Consensus 2 ~~dVvVIGGGlAGleAAlaLAr~Gl~-V~LiE~ 33 (436)
T PRK05335 2 MKPVNVIGAGLAGSEAAWQLAKRGVP-VELYEM 33 (436)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCc-EEEEEc
Confidence 36899999999999999999999975 899984
No 302
>PRK06184 hypothetical protein; Provisional
Probab=83.50 E-value=1.2 Score=47.29 Aligned_cols=34 Identities=24% Similarity=0.454 Sum_probs=30.6
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 24 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 24 ~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
+...|+|||+|..|..+|-.|.+.|+. ++|+|..
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~Gi~-v~viE~~ 35 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARRGVS-FRLIEKA 35 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCc-EEEEeCC
Confidence 457899999999999999999999995 9999864
No 303
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=83.38 E-value=6.2 Score=41.28 Aligned_cols=37 Identities=22% Similarity=0.313 Sum_probs=33.6
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 22 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 22 ~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
.|+.++|+|-|.|-+|..+|+.|...|.+=+++-|.+
T Consensus 234 ~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~ 270 (454)
T PTZ00079 234 SLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSD 270 (454)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 4778999999999999999999999999888888865
No 304
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=83.34 E-value=9.6 Score=36.89 Aligned_cols=33 Identities=21% Similarity=0.188 Sum_probs=23.3
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCC-CeEEEEeC
Q 012484 24 EKASVCLLNCGPTGSETLKNLVLGGI-GSITVIDG 57 (462)
Q Consensus 24 ~~~~VlivG~g~lG~eiaknLvl~Gv-~~itlvD~ 57 (462)
...+|+.+|||+ |..+.....+.|. ++++-+|.
T Consensus 77 ~g~~VLDiG~G~-G~~~~~~a~~~g~~~~v~gvD~ 110 (272)
T PRK11873 77 PGETVLDLGSGG-GFDCFLAARRVGPTGKVIGVDM 110 (272)
T ss_pred CCCEEEEeCCCC-CHHHHHHHHHhCCCCEEEEECC
Confidence 467999999998 7655544445565 46888873
No 305
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=83.24 E-value=1.5 Score=46.53 Aligned_cols=33 Identities=15% Similarity=0.364 Sum_probs=30.2
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEe
Q 012484 23 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVID 56 (462)
Q Consensus 23 L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD 56 (462)
+++++|+|+|+||+|..+++.|+..|+ +++++|
T Consensus 330 ~~~k~vlIiGaGgiG~aia~~L~~~G~-~V~i~~ 362 (477)
T PRK09310 330 LNNQHVAIVGAGGAAKAIATTLARAGA-ELLIFN 362 (477)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEe
Confidence 567899999999999999999999998 888876
No 306
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=83.23 E-value=1.5 Score=43.72 Aligned_cols=34 Identities=15% Similarity=0.149 Sum_probs=29.3
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCc
Q 012484 25 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 59 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~ 59 (462)
..+|+|+|+|++|+-++..|..+| ..++++..+.
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g-~~V~~~~r~~ 38 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAG-FDVHFLLRSD 38 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCC-CeEEEEEeCC
Confidence 358999999999999999999999 5788887543
No 307
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=83.20 E-value=10 Score=37.38 Aligned_cols=144 Identities=18% Similarity=0.215 Sum_probs=73.5
Q ss_pred cEEEEc-CChhHHHHHHHHHHhCCCeEEEEeCCccccc-CCCcc-cccccccccccHHHHHHHHHHHhCCCCeEEEEec-
Q 012484 27 SVCLLN-CGPTGSETLKNLVLGGIGSITVIDGSKVEVG-DLGNN-FMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE- 102 (462)
Q Consensus 27 ~VlivG-~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~-nl~r~-f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~- 102 (462)
+|||.| +|=+||.+++.|..+|.. ++++|+=.-.-. -+.+- .-+-..|+. -.+.+.+.+.+.+|+.-+++-..
T Consensus 2 ~iLVtGGAGYIGSHtv~~Ll~~G~~-vvV~DNL~~g~~~~v~~~~~~f~~gDi~--D~~~L~~vf~~~~idaViHFAa~~ 78 (329)
T COG1087 2 KVLVTGGAGYIGSHTVRQLLKTGHE-VVVLDNLSNGHKIALLKLQFKFYEGDLL--DRALLTAVFEENKIDAVVHFAASI 78 (329)
T ss_pred eEEEecCcchhHHHHHHHHHHCCCe-EEEEecCCCCCHHHhhhccCceEEeccc--cHHHHHHHHHhcCCCEEEECcccc
Confidence 688885 899999999999999985 777773221100 01110 011112221 12234455555666555443111
Q ss_pred -ChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCc-eEEEEeeccceEEEEEEeCCceeeecCCCCCCCCccc
Q 012484 103 -YPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANV-MLIFARSYGLTGFVRISVKEHTVVESKPDHFLDDLRL 180 (462)
Q Consensus 103 -~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~i-p~i~~~~~G~~G~v~~~~~~h~~~~~~~~~~~~~lrl 180 (462)
-.+.+ +....++.+ +......|-+.|+++++ .+|.+++.-.||.--. -++.|++|.. -
T Consensus 79 ~VgESv-~~Pl~Yy~N---------Nv~gTl~Ll~am~~~gv~~~vFSStAavYG~p~~----~PI~E~~~~~------p 138 (329)
T COG1087 79 SVGESV-QNPLKYYDN---------NVVGTLNLIEAMLQTGVKKFIFSSTAAVYGEPTT----SPISETSPLA------P 138 (329)
T ss_pred ccchhh-hCHHHHHhh---------chHhHHHHHHHHHHhCCCEEEEecchhhcCCCCC----cccCCCCCCC------C
Confidence 00110 011122211 22234456678888885 5788888888773211 3455555443 2
Q ss_pred CCCCchhhhhhhc
Q 012484 181 NNPWPELRKFAET 193 (462)
Q Consensus 181 ~~p~p~l~~~~~~ 193 (462)
.+||..-+-+++.
T Consensus 139 ~NPYG~sKlm~E~ 151 (329)
T COG1087 139 INPYGRSKLMSEE 151 (329)
T ss_pred CCcchhHHHHHHH
Confidence 4677766555443
No 308
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=83.14 E-value=10 Score=38.05 Aligned_cols=92 Identities=17% Similarity=0.213 Sum_probs=57.6
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCccc----ccccccccccHHHHHHHHHHHhCCCCeEEEE
Q 012484 25 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNF----MLDESCVGESKAKSVCAFLQELNDAVKAKFI 100 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f----~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~ 100 (462)
..+|.|+|+||+|-.+..-...+|.++|.-+|-..-. -.+.+.| ++++.+.+ -+.+.+.++.+
T Consensus 186 G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~K-l~~A~~fGAT~~vn~~~~~-----~vv~~i~~~T~------- 252 (366)
T COG1062 186 GDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEK-LELAKKFGATHFVNPKEVD-----DVVEAIVELTD------- 252 (366)
T ss_pred CCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHH-HHHHHhcCCceeecchhhh-----hHHHHHHHhcC-------
Confidence 4789999999999999999999999999999843211 1111111 12221111 11122222221
Q ss_pred ecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCce
Q 012484 101 EEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVM 144 (462)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip 144 (462)
...|.++.|..+......--+.|++.|.-
T Consensus 253 ---------------gG~d~~~e~~G~~~~~~~al~~~~~~G~~ 281 (366)
T COG1062 253 ---------------GGADYAFECVGNVEVMRQALEATHRGGTS 281 (366)
T ss_pred ---------------CCCCEEEEccCCHHHHHHHHHHHhcCCeE
Confidence 16778888888877766666677776554
No 309
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=83.08 E-value=5.7 Score=37.82 Aligned_cols=31 Identities=32% Similarity=0.324 Sum_probs=26.5
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEe
Q 012484 23 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVID 56 (462)
Q Consensus 23 L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD 56 (462)
+...+||=||||| .-++.-|++.| .++|-+|
T Consensus 58 l~g~~vLDvGCGg--G~Lse~mAr~G-a~VtgiD 88 (243)
T COG2227 58 LPGLRVLDVGCGG--GILSEPLARLG-ASVTGID 88 (243)
T ss_pred CCCCeEEEecCCc--cHhhHHHHHCC-CeeEEec
Confidence 7889999999984 37889999999 6788877
No 310
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=83.04 E-value=4.3 Score=39.25 Aligned_cols=30 Identities=17% Similarity=0.347 Sum_probs=25.3
Q ss_pred cEEEEcC-ChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 27 SVCLLNC-GPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 27 ~VlivG~-g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
+|+|+|. |.+|+.+++.|...|. ++++++.
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~-~v~~~~r 31 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGR-VVVALTS 31 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCC-EEEEeCC
Confidence 5899985 8899999999999985 5777764
No 311
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=82.93 E-value=5.9 Score=39.72 Aligned_cols=74 Identities=12% Similarity=0.128 Sum_probs=48.6
Q ss_pred cCcEEEEcCChhHHHHHHHHHH-hCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEecC
Q 012484 25 KASVCLLNCGPTGSETLKNLVL-GGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY 103 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl-~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~~ 103 (462)
..++.|+|+|..|..-++.|.. ..+.++.++|. ...|++..++.+++.. +++.... +
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r-------------------~~~~~~~~~~~~~~~g--~~v~~~~-~ 185 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCR-------------------TPSTREKFALRASDYE--VPVRAAT-D 185 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECC-------------------CHHHHHHHHHHHHhhC--CcEEEeC-C
Confidence 4789999999999987776643 45677777762 3346777777776543 2333322 2
Q ss_pred hhhhhcCCcCCCCCCcEEEEcCCC
Q 012484 104 PEALIEMNPPFFSQFTLVVATQLG 127 (462)
Q Consensus 104 ~~~~~~~~~~~~~~~dvVi~~~~~ 127 (462)
+. +.+++.|+|++|+.+
T Consensus 186 ~~-------eav~~aDiVitaT~s 202 (325)
T TIGR02371 186 PR-------EAVEGCDILVTTTPS 202 (325)
T ss_pred HH-------HHhccCCEEEEecCC
Confidence 22 335689999987754
No 312
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=82.93 E-value=1.6 Score=43.69 Aligned_cols=33 Identities=15% Similarity=0.275 Sum_probs=29.2
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCc
Q 012484 26 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 59 (462)
Q Consensus 26 ~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~ 59 (462)
++|.|||+|.+|+.+|.+++.+|. .++++|.+.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~ 40 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAP 40 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence 579999999999999999999997 488998543
No 313
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=82.91 E-value=1.4 Score=44.24 Aligned_cols=50 Identities=22% Similarity=0.316 Sum_probs=38.5
Q ss_pred hhhhHHhh--cCHHHH--HHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 7 KYDRQLRI--WGEQGQ--AALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 7 rYdRQl~l--~G~~~q--~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
.|++|.+- |-.... ..|..++|.|||+|.+|+.+++-|.-.|+. +..+|+
T Consensus 120 ~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~~va~~l~afgm~-v~~~d~ 173 (324)
T COG0111 120 DADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMK-VIGYDP 173 (324)
T ss_pred hhHHHHHcCCccccccccccccCCEEEEECCCHHHHHHHHHHHhCCCe-EEEECC
Confidence 46666644 554212 268899999999999999999999999996 667774
No 314
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=82.81 E-value=0.61 Score=48.48 Aligned_cols=42 Identities=17% Similarity=0.301 Sum_probs=35.9
Q ss_pred HHhhcCHHHH----HHHhcCcEEEEcCChhHHHHHHHHHHhCCCeE
Q 012484 11 QLRIWGEQGQ----AALEKASVCLLNCGPTGSETLKNLVLGGIGSI 52 (462)
Q Consensus 11 Ql~l~G~~~q----~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~i 52 (462)
|-|+|+.+.. ..|++++|+|||+|+.|..-|-||--+|+..+
T Consensus 18 ~~r~~~r~ef~~~~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVv 63 (487)
T PRK05225 18 KCRFMDRDEFADGASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDIS 63 (487)
T ss_pred cceecchhhccchhHHhCCCEEEEEccCHHHHHHhCCCccccceeE
Confidence 4478887665 78999999999999999999999999999533
No 315
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=82.77 E-value=1.5 Score=43.45 Aligned_cols=34 Identities=26% Similarity=0.470 Sum_probs=28.2
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcc
Q 012484 26 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKV 60 (462)
Q Consensus 26 ~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v 60 (462)
..|+|||+|..|+-+|..|.+.|+. ++|+|....
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~-v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGID-VTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCE-EEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccc-cccchhccc
Confidence 4799999999999999999999987 999986543
No 316
>PRK09126 hypothetical protein; Provisional
Probab=82.68 E-value=1.5 Score=44.80 Aligned_cols=36 Identities=19% Similarity=0.468 Sum_probs=31.5
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcc
Q 012484 24 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKV 60 (462)
Q Consensus 24 ~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v 60 (462)
.+..|+|||+|..|+.+|..|.+.|+. ++|+|....
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G~~-v~v~E~~~~ 37 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSGLK-VTLIERQPL 37 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCc-EEEEeCCCc
Confidence 457899999999999999999999985 899986653
No 317
>PRK05866 short chain dehydrogenase; Provisional
Probab=82.62 E-value=3.9 Score=40.12 Aligned_cols=34 Identities=12% Similarity=0.253 Sum_probs=28.4
Q ss_pred HHhcCcEEEEcC-ChhHHHHHHHHHHhCCCeEEEEe
Q 012484 22 ALEKASVCLLNC-GPTGSETLKNLVLGGIGSITVID 56 (462)
Q Consensus 22 ~L~~~~VlivG~-g~lG~eiaknLvl~Gv~~itlvD 56 (462)
.+.+++|+|.|+ ||+|.++++.|+..|. ++.+++
T Consensus 37 ~~~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~ 71 (293)
T PRK05866 37 DLTGKRILLTGASSGIGEAAAEQFARRGA-TVVAVA 71 (293)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEE
Confidence 456688999985 8999999999999996 577765
No 318
>PRK08589 short chain dehydrogenase; Validated
Probab=82.59 E-value=2.9 Score=40.35 Aligned_cols=34 Identities=18% Similarity=0.253 Sum_probs=28.2
Q ss_pred HHhcCcEEEEcC-ChhHHHHHHHHHHhCCCeEEEEe
Q 012484 22 ALEKASVCLLNC-GPTGSETLKNLVLGGIGSITVID 56 (462)
Q Consensus 22 ~L~~~~VlivG~-g~lG~eiaknLvl~Gv~~itlvD 56 (462)
+|.+++++|.|+ +|+|.++++.|+..|. ++.+++
T Consensus 3 ~l~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~ 37 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIALAQEGA-YVLAVD 37 (272)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEe
Confidence 466788999985 8899999999999996 566664
No 319
>PLN02494 adenosylhomocysteinase
Probab=82.52 E-value=1.7 Score=45.56 Aligned_cols=36 Identities=11% Similarity=0.191 Sum_probs=32.1
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCc
Q 012484 23 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 59 (462)
Q Consensus 23 L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~ 59 (462)
+.+++|+|+|+|.+|..+|+.+...|+ +++++|.+.
T Consensus 252 LaGKtVvViGyG~IGr~vA~~aka~Ga-~VIV~e~dp 287 (477)
T PLN02494 252 IAGKVAVICGYGDVGKGCAAAMKAAGA-RVIVTEIDP 287 (477)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCc
Confidence 578999999999999999999999999 688887554
No 320
>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]
Probab=82.51 E-value=6.2 Score=38.39 Aligned_cols=77 Identities=18% Similarity=0.185 Sum_probs=48.9
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCC---CeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEec
Q 012484 26 ASVCLLNCGPTGSETLKNLVLGGI---GSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE 102 (462)
Q Consensus 26 ~~VlivG~g~lG~eiaknLvl~Gv---~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~ 102 (462)
.+|.+||+|.+|..++.-|...|. .+|.+.|+.. ..++.+.+..+.. . ..
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~-----------------------e~~~~l~~~~g~~-~---~~ 54 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSE-----------------------EKRAALAAEYGVV-T---TT 54 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCH-----------------------HHHHHHHHHcCCc-c---cC
Confidence 479999999999999999999994 4666654221 1112344444332 1 11
Q ss_pred ChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHH
Q 012484 103 YPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDR 136 (462)
Q Consensus 103 ~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~ 136 (462)
++.+.....|+|+.+.-|......+.+
T Consensus 55 -------~~~~~~~~advv~LavKPq~~~~vl~~ 81 (266)
T COG0345 55 -------DNQEAVEEADVVFLAVKPQDLEEVLSK 81 (266)
T ss_pred -------cHHHHHhhCCEEEEEeChHhHHHHHHH
Confidence 123446679999999988554444443
No 321
>PRK12939 short chain dehydrogenase; Provisional
Probab=82.46 E-value=3.7 Score=38.59 Aligned_cols=33 Identities=15% Similarity=0.162 Sum_probs=27.3
Q ss_pred HhcCcEEEEcC-ChhHHHHHHHHHHhCCCeEEEEe
Q 012484 23 LEKASVCLLNC-GPTGSETLKNLVLGGIGSITVID 56 (462)
Q Consensus 23 L~~~~VlivG~-g~lG~eiaknLvl~Gv~~itlvD 56 (462)
+.+++|+|.|+ |++|.++++.|+..|.. +.+++
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~~-v~~~~ 38 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGAT-VAFND 38 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCCE-EEEEe
Confidence 56789999985 89999999999999974 55554
No 322
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=82.41 E-value=3.9 Score=43.04 Aligned_cols=34 Identities=15% Similarity=0.120 Sum_probs=28.9
Q ss_pred hcCcEEEEcCChhHHH-HHHHHHHhCCCeEEEEeCC
Q 012484 24 EKASVCLLNCGPTGSE-TLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 24 ~~~~VlivG~g~lG~e-iaknLvl~Gv~~itlvD~d 58 (462)
+.++|+|+|+|+.|.. +|+.|...|.. ++..|..
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~-V~~~D~~ 40 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGYK-VSGSDLK 40 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCCe-EEEECCC
Confidence 4578999999999999 79999999976 7777743
No 323
>PLN02572 UDP-sulfoquinovose synthase
Probab=82.40 E-value=3.6 Score=43.17 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=30.0
Q ss_pred HHhcCcEEEEc-CChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 22 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 22 ~L~~~~VlivG-~g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
++++.+|+|.| +|.+|+.+++.|+..|. +++++|.
T Consensus 44 ~~~~k~VLVTGatGfIGs~Lv~~L~~~G~-~V~~~d~ 79 (442)
T PLN02572 44 SSKKKKVMVIGGDGYCGWATALHLSKRGY-EVAIVDN 79 (442)
T ss_pred cccCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEec
Confidence 56678899998 58899999999999996 6888884
No 324
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=82.38 E-value=1.3 Score=46.65 Aligned_cols=37 Identities=16% Similarity=0.364 Sum_probs=32.0
Q ss_pred HHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 21 AALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 21 ~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
..+...+|+|||+|..|...|+.|.+.|. ++++++..
T Consensus 6 ~~~~~~~VaIIGAG~aGL~aA~~l~~~G~-~v~vfE~~ 42 (461)
T PLN02172 6 NPINSQHVAVIGAGAAGLVAARELRREGH-TVVVFERE 42 (461)
T ss_pred cCCCCCCEEEECCcHHHHHHHHHHHhcCC-eEEEEecC
Confidence 34567899999999999999999999997 68888753
No 325
>PRK14031 glutamate dehydrogenase; Provisional
Probab=82.28 E-value=5.9 Score=41.40 Aligned_cols=37 Identities=16% Similarity=0.142 Sum_probs=33.2
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 22 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 22 ~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
.|++++|+|.|.|-+|+..|+.|...|..=+.+-|.+
T Consensus 225 ~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~ 261 (444)
T PRK14031 225 DLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSD 261 (444)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 4889999999999999999999999999888887733
No 326
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=82.25 E-value=1.6 Score=44.92 Aligned_cols=37 Identities=11% Similarity=0.365 Sum_probs=32.5
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHhCC-CeEEEEeCCc
Q 012484 23 LEKASVCLLNCGPTGSETLKNLVLGGI-GSITVIDGSK 59 (462)
Q Consensus 23 L~~~~VlivG~g~lG~eiaknLvl~Gv-~~itlvD~d~ 59 (462)
|++.+|+|||.|..|..+|..|.+.|. ++|||+|.+.
T Consensus 1 ~~~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~ 38 (396)
T PRK09754 1 MKEKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDER 38 (396)
T ss_pred CCcCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCC
Confidence 356789999999999999999999997 5899998764
No 327
>PRK08264 short chain dehydrogenase; Validated
Probab=82.20 E-value=1.9 Score=40.48 Aligned_cols=35 Identities=11% Similarity=0.158 Sum_probs=30.3
Q ss_pred HhcCcEEEEc-CChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 23 LEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 23 L~~~~VlivG-~g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
+.+++|+|.| .|++|.++++.|+..|..++++++.
T Consensus 4 ~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r 39 (238)
T PRK08264 4 IKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAAR 39 (238)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEec
Confidence 5678899998 5889999999999999977888864
No 328
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.15 E-value=1.7 Score=46.04 Aligned_cols=40 Identities=18% Similarity=0.153 Sum_probs=34.5
Q ss_pred HHHHHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 18 QGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 18 ~~q~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
+....+..++|+|+|+|+.|..+++.|...|. .+++.|.+
T Consensus 8 ~~~~~~~~~~v~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~ 47 (473)
T PRK00141 8 SALPQELSGRVLVAGAGVSGRGIAAMLSELGC-DVVVADDN 47 (473)
T ss_pred hhcccccCCeEEEEccCHHHHHHHHHHHHCCC-EEEEECCC
Confidence 33445677899999999999999999999998 89999964
No 329
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=82.09 E-value=6.4 Score=39.80 Aligned_cols=95 Identities=22% Similarity=0.229 Sum_probs=50.7
Q ss_pred CcEEEEcC-ChhHHHHHHHHHHhCCCeEE-EEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEecC
Q 012484 26 ASVCLLNC-GPTGSETLKNLVLGGIGSIT-VIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY 103 (462)
Q Consensus 26 ~~VlivG~-g~lG~eiaknLvl~Gv~~it-lvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~~ 103 (462)
.+|+|+|+ |.+|.++++.|....--+++ +.|.. ..|+ .+.+..|.+... ....
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~----------------~~g~--------~l~~~~~~~~~~-~~~~ 57 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRS----------------SAGK--------PLSDVHPHLRGL-VDLV 57 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECcc----------------ccCc--------chHHhCcccccc-cCce
Confidence 58999998 77899999999876333443 33311 0111 112222211100 0000
Q ss_pred hhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEe
Q 012484 104 PEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFAR 149 (462)
Q Consensus 104 ~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~ 149 (462)
..++ +...+.+.|+|++|..+. ....+...+.+.|+.+|+.+
T Consensus 58 ~~~~---~~~~~~~vD~Vf~alP~~-~~~~~v~~a~~aG~~VID~S 99 (343)
T PRK00436 58 LEPL---DPEILAGADVVFLALPHG-VSMDLAPQLLEAGVKVIDLS 99 (343)
T ss_pred eecC---CHHHhcCCCEEEECCCcH-HHHHHHHHHHhCCCEEEECC
Confidence 0011 111345789999888664 44455556667888877744
No 330
>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=82.02 E-value=11 Score=38.56 Aligned_cols=31 Identities=16% Similarity=0.261 Sum_probs=28.8
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEe
Q 012484 26 ASVCLLNCGPTGSETLKNLVLGGIGSITVID 56 (462)
Q Consensus 26 ~~VlivG~g~lG~eiaknLvl~Gv~~itlvD 56 (462)
.+|||+|.|+++..+|-+|-..|-+++-|+-
T Consensus 2 ~~VLI~GtGPvAiQLAv~lk~~~~~~vGi~~ 32 (429)
T PF10100_consen 2 GNVLIVGTGPVAIQLAVILKKHGNCRVGIVG 32 (429)
T ss_pred CceEEEcCCHHHHHHHHHHHhccCceeeeec
Confidence 5899999999999999999999999999874
No 331
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=82.00 E-value=2.4 Score=42.85 Aligned_cols=34 Identities=24% Similarity=0.318 Sum_probs=30.5
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCccc
Q 012484 27 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVE 61 (462)
Q Consensus 27 ~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~ 61 (462)
.|+|||.|-+|+.+|..|+..|. +++|+|.+.+.
T Consensus 2 dv~IIG~Gi~G~s~A~~L~~~G~-~V~vle~~~~~ 35 (365)
T TIGR03364 2 DLIIVGAGILGLAHAYAAARRGL-SVTVIERSSRA 35 (365)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCCCC
Confidence 69999999999999999999996 69999987653
No 332
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=81.97 E-value=1.6 Score=44.53 Aligned_cols=34 Identities=18% Similarity=0.406 Sum_probs=30.3
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCc
Q 012484 25 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 59 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~ 59 (462)
...|+|||+|..|+.+|..|.+.|+ +++|+|...
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~-~v~liE~~~ 40 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGA-SVALVAPEP 40 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCC-eEEEEeCCC
Confidence 3579999999999999999999997 599999764
No 333
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=81.95 E-value=14 Score=36.63 Aligned_cols=98 Identities=17% Similarity=0.215 Sum_probs=55.2
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHh-CCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEec
Q 012484 24 EKASVCLLNCGPTGSETLKNLVLG-GIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE 102 (462)
Q Consensus 24 ~~~~VlivG~g~lG~eiaknLvl~-Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~ 102 (462)
++-+|.|||+|.+|...+..|.+. ++.=.-++|.|.- .-|. .+-++.. +.. ...
T Consensus 3 ~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~e--------------s~gl-------a~A~~~G--i~~--~~~ 57 (302)
T PRK08300 3 SKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPE--------------SDGL-------ARARRLG--VAT--SAE 57 (302)
T ss_pred CCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChh--------------hHHH-------HHHHHcC--CCc--ccC
Confidence 457899999999999988887764 2222223332210 0011 1111221 211 112
Q ss_pred ChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEe
Q 012484 103 YPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFAR 149 (462)
Q Consensus 103 ~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~ 149 (462)
..+.+.+ ..-|.+.|+|+.++.+ .........+.+.|+.+|+-.
T Consensus 58 ~ie~LL~--~~~~~dIDiVf~AT~a-~~H~e~a~~a~eaGk~VID~s 101 (302)
T PRK08300 58 GIDGLLA--MPEFDDIDIVFDATSA-GAHVRHAAKLREAGIRAIDLT 101 (302)
T ss_pred CHHHHHh--CcCCCCCCEEEECCCH-HHHHHHHHHHHHcCCeEEECC
Confidence 2333432 1135679999988865 455667778889998877643
No 334
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=81.95 E-value=1.9 Score=42.47 Aligned_cols=35 Identities=11% Similarity=0.166 Sum_probs=31.8
Q ss_pred HHhcCcEEEEcCCh-hHHHHHHHHHHhCCCeEEEEeC
Q 012484 22 ALEKASVCLLNCGP-TGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 22 ~L~~~~VlivG~g~-lG~eiaknLvl~Gv~~itlvD~ 57 (462)
.++.++|+|+|.|+ +|..++..|...|. .+|+++.
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~ga-tVtv~~~ 191 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANA-TVTICHS 191 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCC-EEEEEeC
Confidence 46788999999999 99999999999999 9999863
No 335
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=81.94 E-value=1.5 Score=45.45 Aligned_cols=36 Identities=11% Similarity=0.103 Sum_probs=32.1
Q ss_pred HHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 21 AALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 21 ~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
..|.+++|.|||+|.+|..+|+.+.-.|. ++..+|.
T Consensus 147 ~~L~gktvGIiG~G~IG~~vA~~~~~fGm-~V~~~d~ 182 (409)
T PRK11790 147 FEVRGKTLGIVGYGHIGTQLSVLAESLGM-RVYFYDI 182 (409)
T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEECC
Confidence 46999999999999999999999998888 5777774
No 336
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=81.83 E-value=1.7 Score=43.00 Aligned_cols=31 Identities=19% Similarity=0.453 Sum_probs=28.2
Q ss_pred EEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 28 VCLLNCGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 28 VlivG~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
|.|||+|.+|+-+|-.|+..|...++++|.+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~ 31 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCC
Confidence 6799999999999999999987799999965
No 337
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=81.77 E-value=1 Score=41.77 Aligned_cols=21 Identities=43% Similarity=0.695 Sum_probs=20.3
Q ss_pred chhHHHHHHHHHHHHHHHHhc
Q 012484 440 LHAVAAFIGGVASQEVIKVVF 460 (462)
Q Consensus 440 l~~vaa~~GGiaaQE~iK~i~ 460 (462)
+.|+++++|++.+||++|+++
T Consensus 155 ~~p~~~~~~~~~~~e~~k~~~ 175 (197)
T cd01492 155 LAPVAAVVGGILAQDVINALS 175 (197)
T ss_pred cccHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999986
No 338
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=81.77 E-value=1.8 Score=39.55 Aligned_cols=30 Identities=23% Similarity=0.567 Sum_probs=23.2
Q ss_pred EEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 29 CLLNCGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 29 livG~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
+|||+|..|..+|..|...|+..++|+|..
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~ 30 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERN 30 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESS
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCC
Confidence 699999999999999999999889999954
No 339
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=81.73 E-value=2.1 Score=37.36 Aligned_cols=28 Identities=21% Similarity=0.426 Sum_probs=25.0
Q ss_pred EEEEcCChhHHHHHHHHHHhCCCeEEEEe
Q 012484 28 VCLLNCGPTGSETLKNLVLGGIGSITVID 56 (462)
Q Consensus 28 VlivG~g~lG~eiaknLvl~Gv~~itlvD 56 (462)
|+|+|+|++|+-+|-.|..+|.. +++++
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~-V~l~~ 28 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHD-VTLVS 28 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCE-EEEEE
T ss_pred CEEECcCHHHHHHHHHHHHCCCc-eEEEE
Confidence 78999999999999999997775 77775
No 340
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=81.64 E-value=13 Score=36.82 Aligned_cols=36 Identities=8% Similarity=0.251 Sum_probs=30.7
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCC--eEEEEeCCcccc
Q 012484 27 SVCLLNCGPTGSETLKNLVLGGIG--SITVIDGSKVEV 62 (462)
Q Consensus 27 ~VlivG~g~lG~eiaknLvl~Gv~--~itlvD~d~v~~ 62 (462)
+|.|||.||.|+.++..|...|+. .+..+|.|.-..
T Consensus 2 ~i~viGvGg~G~n~v~~~~~~~~~~~~~iainTd~~~L 39 (303)
T cd02191 2 KIAVIGFGGAGGNIVDKFLEYDKEGRSAVAVNTDAQDL 39 (303)
T ss_pred EEEEEEECchHHHHHHHHHHcCCCCccEEEEECcHHHH
Confidence 699999999999999999999875 477888877433
No 341
>PRK08251 short chain dehydrogenase; Provisional
Probab=81.60 E-value=6.2 Score=37.15 Aligned_cols=32 Identities=6% Similarity=0.207 Sum_probs=26.8
Q ss_pred cCcEEEEc-CChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 25 KASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 25 ~~~VlivG-~g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
+++|+|.| .|++|.++++.|+..|. ++++++.
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r 34 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR-DLALCAR 34 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeC
Confidence 46788988 68899999999999995 6777764
No 342
>PRK07236 hypothetical protein; Provisional
Probab=81.59 E-value=1.8 Score=44.30 Aligned_cols=36 Identities=14% Similarity=0.123 Sum_probs=31.8
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCc
Q 012484 23 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 59 (462)
Q Consensus 23 L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~ 59 (462)
++..+|+|||.|..|..+|..|.+.|+. ++|+|...
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~-v~v~E~~~ 39 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWD-VDVFERSP 39 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCC-EEEEecCC
Confidence 4568999999999999999999999984 89998653
No 343
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=81.51 E-value=1.8 Score=47.92 Aligned_cols=33 Identities=15% Similarity=0.299 Sum_probs=30.3
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCc
Q 012484 26 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 59 (462)
Q Consensus 26 ~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~ 59 (462)
..|+|||.|-+|+.+|..|++.|. +++|+|.+.
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~~G~-~V~VlE~~~ 293 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALARRGW-QVTLYEADE 293 (662)
T ss_pred CCEEEECccHHHHHHHHHHHHCCC-eEEEEecCC
Confidence 589999999999999999999997 599999863
No 344
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=81.23 E-value=6 Score=40.65 Aligned_cols=97 Identities=16% Similarity=0.146 Sum_probs=54.5
Q ss_pred hcCcEEEEcC-ChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEec
Q 012484 24 EKASVCLLNC-GPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE 102 (462)
Q Consensus 24 ~~~~VlivG~-g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~ 102 (462)
+..+|+|+|+ |.+|.|+++.|...-..+++.+-.+ ...|+ .+.+.+|.+...
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~---------------~saG~--------~i~~~~~~l~~~---- 89 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTAD---------------RKAGQ--------SFGSVFPHLITQ---- 89 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEECh---------------hhcCC--------CchhhCccccCc----
Confidence 4469999997 6799999999998866677776422 11222 222333332210
Q ss_pred ChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEe
Q 012484 103 YPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFAR 149 (462)
Q Consensus 103 ~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~ 149 (462)
....+.+....-+++.|+|+.+..+......+..+ ..+.++|+.+
T Consensus 90 ~~~~~~~~~~~~~~~~DvVf~Alp~~~s~~i~~~~--~~g~~VIDlS 134 (381)
T PLN02968 90 DLPNLVAVKDADFSDVDAVFCCLPHGTTQEIIKAL--PKDLKIVDLS 134 (381)
T ss_pred cccceecCCHHHhcCCCEEEEcCCHHHHHHHHHHH--hCCCEEEEcC
Confidence 00001111222247899999988765445444443 3566666644
No 345
>PRK06185 hypothetical protein; Provisional
Probab=81.23 E-value=2 Score=44.19 Aligned_cols=35 Identities=26% Similarity=0.495 Sum_probs=31.2
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCc
Q 012484 24 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 59 (462)
Q Consensus 24 ~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~ 59 (462)
.+..|+|||.|.+|..+|..|++.|+ +++|+|...
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~G~-~v~liE~~~ 39 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARAGV-DVTVLEKHA 39 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCC-cEEEEecCC
Confidence 45789999999999999999999998 599999763
No 346
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=81.05 E-value=20 Score=29.40 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=21.2
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCeEEEEe
Q 012484 25 KASVCLLNCGPTGSETLKNLVLGGIGSITVID 56 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD 56 (462)
+.+|+-+|||. |.-....+-..+-++++-+|
T Consensus 20 ~~~vldlG~G~-G~~~~~l~~~~~~~~v~~vD 50 (124)
T TIGR02469 20 GDVLWDIGAGS-GSITIEAARLVPNGRVYAIE 50 (124)
T ss_pred CCEEEEeCCCC-CHHHHHHHHHCCCceEEEEc
Confidence 56899999975 65544444444447888888
No 347
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.98 E-value=1.9 Score=40.72 Aligned_cols=34 Identities=18% Similarity=0.251 Sum_probs=29.3
Q ss_pred HhcCcEEEEcC-ChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 23 LEKASVCLLNC-GPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 23 L~~~~VlivG~-g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
+++++|+|.|+ |++|.++++.|...|.. +++++.
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~-V~~~~r 37 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGAR-VVVTDR 37 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeC
Confidence 56789999985 78999999999999986 888764
No 348
>PRK00536 speE spermidine synthase; Provisional
Probab=80.97 E-value=7 Score=37.96 Aligned_cols=30 Identities=7% Similarity=0.078 Sum_probs=23.2
Q ss_pred cCcEEEEcC--ChhHHHHHHHHHHhCCCeEEEEeCCc
Q 012484 25 KASVCLLNC--GPTGSETLKNLVLGGIGSITVIDGSK 59 (462)
Q Consensus 25 ~~~VlivG~--g~lG~eiaknLvl~Gv~~itlvD~d~ 59 (462)
-++|||+|- ||+.-|++|.= .++++||-|.
T Consensus 73 pk~VLIiGGGDGg~~REvLkh~-----~~v~mVeID~ 104 (262)
T PRK00536 73 LKEVLIVDGFDLELAHQLFKYD-----THVDFVQADE 104 (262)
T ss_pred CCeEEEEcCCchHHHHHHHCcC-----CeeEEEECCH
Confidence 489999985 57778888872 3999998554
No 349
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=80.94 E-value=2.1 Score=43.60 Aligned_cols=35 Identities=17% Similarity=0.289 Sum_probs=31.0
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcc
Q 012484 25 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKV 60 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v 60 (462)
...|+|||.|..|..+|..|.+.|+ +++|+|.+..
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~-~v~v~E~~~~ 39 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGL-RVALLAPRAP 39 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCC-eEEEEecCCC
Confidence 3579999999999999999999998 6999997654
No 350
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=80.88 E-value=5.4 Score=40.14 Aligned_cols=36 Identities=19% Similarity=0.218 Sum_probs=30.0
Q ss_pred HHhcCcEEEEcC-ChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 22 ALEKASVCLLNC-GPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 22 ~L~~~~VlivG~-g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
+++.++|+|.|+ |=+|+.+++.|...|. +++.+|..
T Consensus 12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~-~V~~~d~~ 48 (348)
T PRK15181 12 VLAPKRWLITGVAGFIGSGLLEELLFLNQ-TVIGLDNF 48 (348)
T ss_pred cccCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 466789999995 7799999999999985 67888753
No 351
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=80.83 E-value=1.3 Score=47.21 Aligned_cols=39 Identities=15% Similarity=0.296 Sum_probs=34.7
Q ss_pred HHHhcCcEEEEcCChhHHHHHHHHH----HhCC------CeEEEEeCCc
Q 012484 21 AALEKASVCLLNCGPTGSETLKNLV----LGGI------GSITVIDGSK 59 (462)
Q Consensus 21 ~~L~~~~VlivG~g~lG~eiaknLv----l~Gv------~~itlvD~d~ 59 (462)
.+|+..+|++.|+|+.|.-||+.|+ ..|+ ++|.++|.+-
T Consensus 293 ~~l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~G 341 (559)
T PTZ00317 293 VPPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKG 341 (559)
T ss_pred CChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCC
Confidence 4788999999999999999999988 4899 8999999764
No 352
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=80.82 E-value=2.5 Score=41.48 Aligned_cols=27 Identities=19% Similarity=0.252 Sum_probs=24.8
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCe
Q 012484 25 KASVCLLNCGPTGSETLKNLVLGGIGS 51 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl~Gv~~ 51 (462)
..+|+|+|+|.+|..++..|...|...
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v 29 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVV 29 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeE
Confidence 468999999999999999999999974
No 353
>PRK13529 malate dehydrogenase; Provisional
Probab=80.79 E-value=1.2 Score=47.50 Aligned_cols=40 Identities=18% Similarity=0.400 Sum_probs=35.1
Q ss_pred HHHhcCcEEEEcCChhHHHHHHHHHH----hCC------CeEEEEeCCcc
Q 012484 21 AALEKASVCLLNCGPTGSETLKNLVL----GGI------GSITVIDGSKV 60 (462)
Q Consensus 21 ~~L~~~~VlivG~g~lG~eiaknLvl----~Gv------~~itlvD~d~v 60 (462)
.+|+..+|++.|+|+.|.-||+.|+. .|+ ++|.++|.+-+
T Consensus 291 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GL 340 (563)
T PRK13529 291 EPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGL 340 (563)
T ss_pred CChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCe
Confidence 47888999999999999999999997 699 69999997643
No 354
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=80.75 E-value=6.9 Score=40.74 Aligned_cols=31 Identities=29% Similarity=0.370 Sum_probs=27.1
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 27 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 27 ~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
+|.|+|+|+.|..+|+-|...|. .++..|..
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~-~V~~sD~~ 31 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGA-EVTVTDLK 31 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCC-EEEEEeCC
Confidence 58999999999999999999998 58887743
No 355
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=80.74 E-value=13 Score=34.11 Aligned_cols=79 Identities=14% Similarity=0.210 Sum_probs=41.5
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhC-CCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEec
Q 012484 24 EKASVCLLNCGPTGSETLKNLVLGG-IGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE 102 (462)
Q Consensus 24 ~~~~VlivG~g~lG~eiaknLvl~G-v~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~ 102 (462)
...+|+-+|||+ |.-.+..+-+.| -++++-+|.+. ...+.+++.+...+-.-.+..+..
T Consensus 40 ~~~~vlDlG~Gt-G~~s~~~a~~~~~~~~v~avD~~~-------------------~~~~~a~~n~~~~g~~~~v~~~~~ 99 (198)
T PRK00377 40 KGDMILDIGCGT-GSVTVEASLLVGETGKVYAVDKDE-------------------KAINLTRRNAEKFGVLNNIVLIKG 99 (198)
T ss_pred CcCEEEEeCCcC-CHHHHHHHHHhCCCCEEEEEECCH-------------------HHHHHHHHHHHHhCCCCCeEEEEe
Confidence 457899999976 544333333334 36888888332 244555566665441112333333
Q ss_pred ChhhhhcCCcCCCCCCcEEEEcC
Q 012484 103 YPEALIEMNPPFFSQFTLVVATQ 125 (462)
Q Consensus 103 ~~~~~~~~~~~~~~~~dvVi~~~ 125 (462)
+..+.... .-..||.|+...
T Consensus 100 d~~~~l~~---~~~~~D~V~~~~ 119 (198)
T PRK00377 100 EAPEILFT---INEKFDRIFIGG 119 (198)
T ss_pred chhhhHhh---cCCCCCEEEECC
Confidence 33222111 113699999754
No 356
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=80.73 E-value=2.2 Score=42.79 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=27.9
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 26 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 26 ~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
.+|.|+|+|.+|+.++.+|+..|. .++++|.+
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~-~V~~~~r~ 36 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGV-PVRLWARR 36 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 379999999999999999999996 58888753
No 357
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=80.72 E-value=1.9 Score=44.21 Aligned_cols=34 Identities=15% Similarity=0.427 Sum_probs=30.9
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCc
Q 012484 25 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 59 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~ 59 (462)
...|+|||.|..|..+|-.|++.|+. ++|+|...
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G~~-v~liE~~~ 39 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAGLS-VALVEGRE 39 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCE-EEEEeCCC
Confidence 46899999999999999999999996 99999764
No 358
>PLN02256 arogenate dehydrogenase
Probab=80.67 E-value=2.1 Score=42.51 Aligned_cols=36 Identities=17% Similarity=0.205 Sum_probs=30.3
Q ss_pred HHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 21 AALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 21 ~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
.+.+..+|.|||+|.+|..+++.|...|. .++.+|.
T Consensus 32 ~~~~~~kI~IIG~G~mG~slA~~L~~~G~-~V~~~d~ 67 (304)
T PLN02256 32 EKSRKLKIGIVGFGNFGQFLAKTFVKQGH-TVLATSR 67 (304)
T ss_pred ccCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEEC
Confidence 34566789999999999999999999885 6777774
No 359
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=80.67 E-value=12 Score=37.27 Aligned_cols=33 Identities=21% Similarity=0.310 Sum_probs=28.8
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 25 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
..+|+|.|+|++|..++.-+-..|..+++.+|.
T Consensus 164 g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~ 196 (339)
T cd08239 164 RDTVLVVGAGPVGLGALMLARALGAEDVIGVDP 196 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECC
Confidence 579999999999999999998999987777753
No 360
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=80.67 E-value=23 Score=33.98 Aligned_cols=76 Identities=14% Similarity=0.089 Sum_probs=42.1
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEecCh
Q 012484 25 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYP 104 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~~~ 104 (462)
..+|+=+||| .|. .+..|+..| .+++.+|... ...+.+++++.+..-.-+++++..+.
T Consensus 45 ~~~vLDiGcG-~G~-~a~~la~~g-~~v~~vD~s~-------------------~~l~~a~~~~~~~g~~~~v~~~~~d~ 102 (255)
T PRK11036 45 PLRVLDAGGG-EGQ-TAIKLAELG-HQVILCDLSA-------------------EMIQRAKQAAEAKGVSDNMQFIHCAA 102 (255)
T ss_pred CCEEEEeCCC-chH-HHHHHHHcC-CEEEEEECCH-------------------HHHHHHHHHHHhcCCccceEEEEcCH
Confidence 4689999997 443 566666666 5788887322 23344455555443222344444443
Q ss_pred hhhhcCCcCCCCCCcEEEEcC
Q 012484 105 EALIEMNPPFFSQFTLVVATQ 125 (462)
Q Consensus 105 ~~~~~~~~~~~~~~dvVi~~~ 125 (462)
..+.. ..-..||+|++..
T Consensus 103 ~~l~~---~~~~~fD~V~~~~ 120 (255)
T PRK11036 103 QDIAQ---HLETPVDLILFHA 120 (255)
T ss_pred HHHhh---hcCCCCCEEEehh
Confidence 33311 1124799998653
No 361
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=80.65 E-value=1.9 Score=44.43 Aligned_cols=31 Identities=23% Similarity=0.487 Sum_probs=28.4
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 27 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 27 ~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
+|+|||+|+.|+..|..|++.|+. ++|+|..
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G~~-V~llE~~ 32 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAGIQ-TFLLERK 32 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCc-EEEEecC
Confidence 699999999999999999999985 8899864
No 362
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=80.61 E-value=2.9 Score=31.51 Aligned_cols=28 Identities=21% Similarity=0.395 Sum_probs=24.8
Q ss_pred EEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 30 LLNCGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 30 ivG~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
|||+|..|...|..|.+.|. +++|+|..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~-~v~v~E~~ 28 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGY-RVTVFEKN 28 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTS-EEEEEESS
T ss_pred CEeeCHHHHHHHHHHHHCCC-cEEEEecC
Confidence 79999999999999999999 89999854
No 363
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=80.55 E-value=2.3 Score=44.26 Aligned_cols=40 Identities=18% Similarity=0.367 Sum_probs=36.0
Q ss_pred HHHHHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 18 QGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 18 ~~q~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
.+.++..+++|+|||+|..|-..|..|.-.|+..++|+..
T Consensus 14 ~~~~~~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa 53 (498)
T KOG0685|consen 14 SGLKARGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEA 53 (498)
T ss_pred hhhhccCCceEEEECCchHHHHHHHHHHHhCCceEEEEEe
Confidence 4566778899999999999999999999999999999873
No 364
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=80.53 E-value=3 Score=43.25 Aligned_cols=108 Identities=17% Similarity=0.110 Sum_probs=64.4
Q ss_pred hcCcEEEEcCChhHH-HHHHHHH----HhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEE
Q 012484 24 EKASVCLLNCGPTGS-ETLKNLV----LGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAK 98 (462)
Q Consensus 24 ~~~~VlivG~g~lG~-eiaknLv----l~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~ 98 (462)
++-+|.+||.|+++. +.+..++ ...+..|.|+|-| ++.+. -=...+.+.+.+.++.++++
T Consensus 2 ~~~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did---~~r~~------------~i~~~~~~~v~~~g~~~kv~ 66 (442)
T COG1486 2 KKFKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDID---EERLK------------IIAILAKKLVEEAGAPVKVE 66 (442)
T ss_pred CcceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCC---HHHHH------------HHHHHHHHHHHhhCCCeEEE
Confidence 456899999998864 2222222 3456788888822 21111 01224556778888888877
Q ss_pred EEecChhhhhcCCcCCCCCCcEEEEcC--CChHHHHHHHHHHHHcCceEEEEeeccceEE
Q 012484 99 FIEEYPEALIEMNPPFFSQFTLVVATQ--LGEEKMIKLDRICREANVMLIFARSYGLTGF 156 (462)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~dvVi~~~--~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G~ 156 (462)
.... . .+-+.++|.|+.+- ...+.+..=-++..++|+ +-..|.|..|+
T Consensus 67 ~ttd-~-------~eAl~gAdfVi~~~rvG~l~~r~~De~IplkyG~--~gqET~G~GGi 116 (442)
T COG1486 67 ATTD-R-------REALEGADFVITQIRVGGLEAREKDERIPLKHGL--YGQETNGPGGI 116 (442)
T ss_pred EecC-H-------HHHhcCCCEEEEEEeeCCcccchhhhccchhhCc--cccccccccHH
Confidence 6542 1 23477899999764 333444444456666665 33667777665
No 365
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=80.50 E-value=1.8 Score=46.47 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=32.1
Q ss_pred HHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 21 AALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 21 ~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
..|.+++|.|+|+|.+|.++|+.|...|. ++..+|+
T Consensus 136 ~~l~gktvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~ 171 (526)
T PRK13581 136 VELYGKTLGIIGLGRIGSEVAKRAKAFGM-KVIAYDP 171 (526)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECC
Confidence 35899999999999999999999999888 6777775
No 366
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=80.48 E-value=9 Score=38.80 Aligned_cols=96 Identities=18% Similarity=0.161 Sum_probs=51.5
Q ss_pred cEEEEcC-ChhHHHHHHHHHHhCCCeEE-EEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEecCh
Q 012484 27 SVCLLNC-GPTGSETLKNLVLGGIGSIT-VIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEYP 104 (462)
Q Consensus 27 ~VlivG~-g~lG~eiaknLvl~Gv~~it-lvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~~~ 104 (462)
+|+|+|+ |.+|.++++.|...-.-+++ +++... ..|+ .+.+..|.+.... ....
T Consensus 2 kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~---------------sagk--------~~~~~~~~l~~~~-~~~~ 57 (346)
T TIGR01850 2 KVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRE---------------SAGK--------PVSEVHPHLRGLV-DLNL 57 (346)
T ss_pred EEEEECCCCHHHHHHHHHHHcCCCceEEEEeccch---------------hcCC--------ChHHhCccccccC-Ccee
Confidence 7999998 78999999999865333344 545331 1222 1222233222100 0000
Q ss_pred hhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEe
Q 012484 105 EALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFAR 149 (462)
Q Consensus 105 ~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~ 149 (462)
... +..++..+.|+|++|..+... ..+...+.+.|+.+|+.+
T Consensus 58 ~~~--~~~~~~~~~DvVf~alP~~~s-~~~~~~~~~~G~~VIDlS 99 (346)
T TIGR01850 58 EPI--DEEEIAEDADVVFLALPHGVS-AELAPELLAAGVKVIDLS 99 (346)
T ss_pred ecC--CHHHhhcCCCEEEECCCchHH-HHHHHHHHhCCCEEEeCC
Confidence 000 011233479999998876444 444445566788777754
No 367
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=80.32 E-value=1.9 Score=44.29 Aligned_cols=33 Identities=24% Similarity=0.429 Sum_probs=29.9
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCc
Q 012484 26 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 59 (462)
Q Consensus 26 ~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~ 59 (462)
..|+|||+|..|..+|-.|.+.|+ +++|+|...
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~-~v~viE~~~ 35 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGL-EVLLLDGGP 35 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCC-EEEEEcCCC
Confidence 579999999999999999999997 699999765
No 368
>PRK14030 glutamate dehydrogenase; Provisional
Probab=80.31 E-value=12 Score=39.11 Aligned_cols=37 Identities=11% Similarity=0.106 Sum_probs=32.9
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 22 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 22 ~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
.|+.++|+|-|.|.+|+.+|+.|...|..=+.+-|.+
T Consensus 225 ~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~ 261 (445)
T PRK14030 225 DIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPD 261 (445)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 3788999999999999999999999999888877643
No 369
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=80.26 E-value=2.2 Score=44.10 Aligned_cols=36 Identities=14% Similarity=0.094 Sum_probs=31.9
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCc
Q 012484 23 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 59 (462)
Q Consensus 23 L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~ 59 (462)
+..++|+|+|+|.+|.-+++.+...|. +++++|.|.
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp 228 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDP 228 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCCh
Confidence 578999999999999999999999998 588887554
No 370
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=80.17 E-value=2.2 Score=45.46 Aligned_cols=32 Identities=22% Similarity=0.373 Sum_probs=29.0
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 26 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 26 ~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
.+|.|||+|.+|+.+|.+|+..|. .++++|.+
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~-~V~v~D~~ 36 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGI-DVAVFDPH 36 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence 379999999999999999999998 69999864
No 371
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=80.02 E-value=2 Score=43.91 Aligned_cols=34 Identities=26% Similarity=0.452 Sum_probs=30.2
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCc
Q 012484 25 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 59 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~ 59 (462)
...|+|||.|..|...|-.|.+.|+ +++|+|...
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~-~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGR-SVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCC-cEEEEcCCC
Confidence 4589999999999999999999997 699999653
No 372
>PRK09414 glutamate dehydrogenase; Provisional
Probab=79.97 E-value=10 Score=39.70 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=31.4
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 22 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 22 ~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
.|+.++|.|.|.|.+|+.+|+.|...|..=+.+.|.
T Consensus 229 ~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs 264 (445)
T PRK09414 229 SFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDS 264 (445)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcC
Confidence 478899999999999999999999999776666673
No 373
>PRK08013 oxidoreductase; Provisional
Probab=79.93 E-value=2.2 Score=43.90 Aligned_cols=35 Identities=17% Similarity=0.271 Sum_probs=30.8
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCc
Q 012484 24 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 59 (462)
Q Consensus 24 ~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~ 59 (462)
.+..|+|||+|..|...|-.|.+.|+ +++|+|...
T Consensus 2 ~~~dV~IvGaGpaGl~~A~~La~~G~-~v~viE~~~ 36 (400)
T PRK08013 2 QSVDVVIAGGGMVGLAVACGLQGSGL-RVAVLEQRV 36 (400)
T ss_pred CcCCEEEECcCHHHHHHHHHHhhCCC-EEEEEeCCC
Confidence 34689999999999999999999998 489999655
No 374
>PRK06523 short chain dehydrogenase; Provisional
Probab=79.92 E-value=6.1 Score=37.59 Aligned_cols=37 Identities=16% Similarity=0.214 Sum_probs=31.0
Q ss_pred HHhcCcEEEEcC-ChhHHHHHHHHHHhCCCeEEEEeCCc
Q 012484 22 ALEKASVCLLNC-GPTGSETLKNLVLGGIGSITVIDGSK 59 (462)
Q Consensus 22 ~L~~~~VlivG~-g~lG~eiaknLvl~Gv~~itlvD~d~ 59 (462)
++++++|+|.|+ |++|.++++.|+..|. ++.+++.+.
T Consensus 6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~r~~ 43 (260)
T PRK06523 6 ELAGKRALVTGGTKGIGAATVARLLEAGA-RVVTTARSR 43 (260)
T ss_pred CCCCCEEEEECCCCchhHHHHHHHHHCCC-EEEEEeCCh
Confidence 467889999985 8999999999999998 488887653
No 375
>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....
Probab=79.88 E-value=13 Score=29.87 Aligned_cols=92 Identities=24% Similarity=0.373 Sum_probs=51.7
Q ss_pred hcCcEEEEcCChhHHHHHHH-HHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEec
Q 012484 24 EKASVCLLNCGPTGSETLKN-LVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEE 102 (462)
Q Consensus 24 ~~~~VlivG~g~lG~eiakn-Lvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~ 102 (462)
+..+|+|+|+|++|..++.+ ....|.+-..++| +++..+++. ++ .+. ++ .
T Consensus 2 k~~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~d---v~~~~~G~~-------i~----------------gip--V~-~ 52 (96)
T PF02629_consen 2 KKTNVIIVGAGNLGRALLYNGFSMRGFGIVAVFD---VDPEKIGKE-------IG----------------GIP--VY-G 52 (96)
T ss_dssp TTEEEEEETTTSHHHHHHHHHHHHHCECEEEEEE---ECTTTTTSE-------ET----------------TEE--EE-S
T ss_pred CCCeEEEECCCCcHHHHHHhHHHHcCCCCEEEEE---cCCCccCcE-------EC----------------CEE--ee-c
Confidence 35789999999999988743 4467878778887 333344432 11 222 22 1
Q ss_pred ChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEee
Q 012484 103 YPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARS 150 (462)
Q Consensus 103 ~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~ 150 (462)
+..++.+ .. +.|+.|.+..+..++.... .+.+.+++-|...+
T Consensus 53 ~~~~l~~----~~-~i~iaii~VP~~~a~~~~~-~~~~~gIk~i~nft 94 (96)
T PF02629_consen 53 SMDELEE----FI-EIDIAIITVPAEAAQEVAD-ELVEAGIKGIVNFT 94 (96)
T ss_dssp SHHHHHH----HC-TTSEEEEES-HHHHHHHHH-HHHHTT-SEEEEES
T ss_pred cHHHhhh----hh-CCCEEEEEcCHHHHHHHHH-HHHHcCCCEEEEeC
Confidence 2222221 12 3778777775544454444 44458887776554
No 376
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=79.87 E-value=5.6 Score=39.24 Aligned_cols=116 Identities=11% Similarity=0.069 Sum_probs=62.0
Q ss_pred hcCcEEEEcCCh-hHHHHHHHHHHhCCCeEEEEeCC--cccccCCCcccccccccccccHHHHHHHHHHHh-CCCCeEEE
Q 012484 24 EKASVCLLNCGP-TGSETLKNLVLGGIGSITVIDGS--KVEVGDLGNNFMLDESCVGESKAKSVCAFLQEL-NDAVKAKF 99 (462)
Q Consensus 24 ~~~~VlivG~g~-lG~eiaknLvl~Gv~~itlvD~d--~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~l-Np~v~v~~ 99 (462)
.+.+|||.|..+ +|.-+++||...|...+..|.+. .-+.. |.+--..+ ..+-+- .|++-+-.
T Consensus 7 ~~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~~~~~~v~-------------G~~~y~sv-~dlp~~~~~DlAvi~ 72 (291)
T PRK05678 7 KDTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGKGGTTVL-------------GLPVFNTV-AEAVEATGANASVIY 72 (291)
T ss_pred CCCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCCCCCCeEe-------------CeeccCCH-HHHhhccCCCEEEEE
Confidence 468999999854 99999999999888766567655 21111 11111111 111111 24544433
Q ss_pred EecChhhhhcCCcCCC-CCCc-EEEE-cCCChHHHHHHHHHHHHcCceEEEEeeccceE
Q 012484 100 IEEYPEALIEMNPPFF-SQFT-LVVA-TQLGEEKMIKLDRICREANVMLIFARSYGLTG 155 (462)
Q Consensus 100 ~~~~~~~~~~~~~~~~-~~~d-vVi~-~~~~~~~~~~l~~~~~~~~ip~i~~~~~G~~G 155 (462)
+... ...+.-.+.. .+.- +||. ..-.......|-+.++++++.++--.+.|+.-
T Consensus 73 vp~~--~v~~~l~e~~~~gvk~avI~s~Gf~~~~~~~l~~~a~~~girvlGPNc~Gi~~ 129 (291)
T PRK05678 73 VPPP--FAADAILEAIDAGIDLIVCITEGIPVLDMLEVKAYLERKKTRLIGPNCPGIIT 129 (291)
T ss_pred cCHH--HHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHcCCEEECCCCCcccc
Confidence 3221 1110000000 1222 2333 33343334478899999999999888888643
No 377
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=79.82 E-value=1.9 Score=44.48 Aligned_cols=33 Identities=24% Similarity=0.379 Sum_probs=29.9
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 25 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
...|+|||+|..|.-+|-.|.+.|+. ++|+|..
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~-v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLR-IAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCE-EEEEcCC
Confidence 46899999999999999999999985 8999964
No 378
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=79.77 E-value=2.3 Score=43.73 Aligned_cols=32 Identities=31% Similarity=0.402 Sum_probs=29.4
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCc
Q 012484 27 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 59 (462)
Q Consensus 27 ~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~ 59 (462)
+|+|||.|-+|+.+|..|+..|. +++|+|.+.
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~-~V~vle~~~ 33 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGH-EVTVIDRQP 33 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence 69999999999999999999996 699999874
No 379
>PLN03139 formate dehydrogenase; Provisional
Probab=79.72 E-value=2.1 Score=43.97 Aligned_cols=36 Identities=22% Similarity=0.164 Sum_probs=31.8
Q ss_pred HHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 21 AALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 21 ~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
..|..++|.|||+|.+|..+|+.|...|+. +..+|.
T Consensus 195 ~~L~gktVGIVG~G~IG~~vA~~L~afG~~-V~~~d~ 230 (386)
T PLN03139 195 YDLEGKTVGTVGAGRIGRLLLQRLKPFNCN-LLYHDR 230 (386)
T ss_pred cCCCCCEEEEEeecHHHHHHHHHHHHCCCE-EEEECC
Confidence 469999999999999999999999999985 666774
No 380
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=79.70 E-value=2.5 Score=40.82 Aligned_cols=33 Identities=18% Similarity=0.458 Sum_probs=29.6
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcc
Q 012484 27 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKV 60 (462)
Q Consensus 27 ~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v 60 (462)
.|+|||+|..|..+|..|.+.|+ +++++|....
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~-~v~vie~~~~ 34 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGL-RVLLLEKKSF 34 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCC-eEEEEeccCC
Confidence 58999999999999999999999 5999997653
No 381
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=79.69 E-value=4.9 Score=39.07 Aligned_cols=22 Identities=23% Similarity=0.380 Sum_probs=19.9
Q ss_pred CcEEEEcCChhHHHHHHHHHHh
Q 012484 26 ASVCLLNCGPTGSETLKNLVLG 47 (462)
Q Consensus 26 ~~VlivG~g~lG~eiaknLvl~ 47 (462)
.||.|+|||.+|..++++|...
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~ 23 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHD 23 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhC
Confidence 3799999999999999999875
No 382
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=79.67 E-value=16 Score=34.10 Aligned_cols=94 Identities=16% Similarity=0.207 Sum_probs=55.1
Q ss_pred EEEEcC-ChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEecC-hh
Q 012484 28 VCLLNC-GPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY-PE 105 (462)
Q Consensus 28 VlivG~-g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~~-~~ 105 (462)
|+|+|+ |.+|..++..|...|.. ++.+= |. . .......++.. .+++...+.. .+
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~-V~~l~----------R~-----~------~~~~~~~l~~~--g~~vv~~d~~~~~ 56 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFS-VRALV----------RD-----P------SSDRAQQLQAL--GAEVVEADYDDPE 56 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGC-EEEEE----------SS-----S------HHHHHHHHHHT--TTEEEES-TT-HH
T ss_pred CEEECCccHHHHHHHHHHHhCCCC-cEEEE----------ec-----c------chhhhhhhhcc--cceEeecccCCHH
Confidence 789996 88999999999997654 55431 11 0 11122344443 4444322211 11
Q ss_pred hhhcCCcCCCCCCcEEEEcCC---C--hHHHHHHHHHHHHcCceEEEEe
Q 012484 106 ALIEMNPPFFSQFTLVVATQL---G--EEKMIKLDRICREANVMLIFAR 149 (462)
Q Consensus 106 ~~~~~~~~~~~~~dvVi~~~~---~--~~~~~~l~~~~~~~~ip~i~~~ 149 (462)
.+ ...|++.|.|+++.. . ......+.+.|.+.|++.+.-.
T Consensus 57 ~l----~~al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v~s 101 (233)
T PF05368_consen 57 SL----VAALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFVPS 101 (233)
T ss_dssp HH----HHHHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEEES
T ss_pred HH----HHHHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceEEEE
Confidence 11 235789999987665 2 2346678889999988766533
No 383
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=79.27 E-value=3.4 Score=43.02 Aligned_cols=37 Identities=32% Similarity=0.376 Sum_probs=30.6
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCc
Q 012484 22 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 59 (462)
Q Consensus 22 ~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~ 59 (462)
++...+|+|||.|-.|..+|+.|...++ +|||||+..
T Consensus 7 ~~~~~~vVIvGgG~aGl~~a~~L~~~~~-~ItlI~~~~ 43 (424)
T PTZ00318 7 RLKKPNVVVLGTGWAGAYFVRNLDPKKY-NITVISPRN 43 (424)
T ss_pred CCCCCeEEEECCCHHHHHHHHHhCcCCC-eEEEEcCCC
Confidence 5677899999999999999999965544 699998654
No 384
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=79.18 E-value=2.5 Score=42.19 Aligned_cols=33 Identities=21% Similarity=0.225 Sum_probs=29.1
Q ss_pred cEEEEcC-ChhHHHHHHHHHHhCC-CeEEEEeCCc
Q 012484 27 SVCLLNC-GPTGSETLKNLVLGGI-GSITVIDGSK 59 (462)
Q Consensus 27 ~VlivG~-g~lG~eiaknLvl~Gv-~~itlvD~d~ 59 (462)
+|.|+|+ |.+|+.+|-.|+..|+ ..+.|+|-..
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~ 35 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG 35 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 6899999 9999999999999998 5799998543
No 385
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=79.10 E-value=2.7 Score=40.84 Aligned_cols=32 Identities=19% Similarity=0.397 Sum_probs=28.9
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCc
Q 012484 27 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 59 (462)
Q Consensus 27 ~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~ 59 (462)
+|+|||.|..|.+.|..|.+.|.. ++|+|...
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g~~-v~lie~~~ 33 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARANLK-TLIIEGME 33 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCCCC-EEEEeccC
Confidence 699999999999999999999985 99999653
No 386
>PRK06194 hypothetical protein; Provisional
Probab=79.07 E-value=2 Score=41.67 Aligned_cols=34 Identities=9% Similarity=0.043 Sum_probs=28.6
Q ss_pred HhcCcEEEEc-CChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 23 LEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 23 L~~~~VlivG-~g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
+++.+|+|.| .|++|.++++.|+..|. +++++|.
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r 38 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALGM-KLVLADV 38 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeC
Confidence 5567899998 58899999999999997 5888764
No 387
>PRK08507 prephenate dehydrogenase; Validated
Probab=79.06 E-value=2.7 Score=40.90 Aligned_cols=31 Identities=16% Similarity=0.135 Sum_probs=26.7
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCC-eEEEEeC
Q 012484 27 SVCLLNCGPTGSETLKNLVLGGIG-SITVIDG 57 (462)
Q Consensus 27 ~VlivG~g~lG~eiaknLvl~Gv~-~itlvD~ 57 (462)
+|+|||+|.+|+.++..|...|.. .++.+|.
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~ 33 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDH 33 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcC
Confidence 699999999999999999999973 5776663
No 388
>PRK06841 short chain dehydrogenase; Provisional
Probab=79.04 E-value=2.8 Score=39.76 Aligned_cols=34 Identities=12% Similarity=0.189 Sum_probs=28.9
Q ss_pred HhcCcEEEEcC-ChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 23 LEKASVCLLNC-GPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 23 L~~~~VlivG~-g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
+.+++|+|.|+ |++|.++++.|+..|. ++.+++.
T Consensus 13 ~~~k~vlItGas~~IG~~la~~l~~~G~-~Vi~~~r 47 (255)
T PRK06841 13 LSGKVAVVTGGASGIGHAIAELFAAKGA-RVALLDR 47 (255)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 56789999995 8899999999999997 5777653
No 389
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=79.03 E-value=2.5 Score=44.01 Aligned_cols=31 Identities=23% Similarity=0.387 Sum_probs=28.0
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 26 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 26 ~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
.+|+|||+|-+|+|+|..|++.|+ +++|++.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~G~-~V~LiE~ 31 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQAGV-PVILYEM 31 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCC-cEEEEec
Confidence 479999999999999999999997 5888874
No 390
>PRK06398 aldose dehydrogenase; Validated
Probab=78.99 E-value=6.1 Score=37.77 Aligned_cols=36 Identities=14% Similarity=0.142 Sum_probs=30.0
Q ss_pred HHhcCcEEEEcC-ChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 22 ALEKASVCLLNC-GPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 22 ~L~~~~VlivG~-g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
.|++++|+|.|+ |++|.++++.|+..|. ++++++.+
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~-~Vi~~~r~ 39 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGS-NVINFDIK 39 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCC
Confidence 466788999985 7899999999999997 67777754
No 391
>PRK07791 short chain dehydrogenase; Provisional
Probab=78.96 E-value=4.8 Score=39.31 Aligned_cols=34 Identities=21% Similarity=0.247 Sum_probs=28.1
Q ss_pred HHhcCcEEEEc-CChhHHHHHHHHHHhCCCeEEEEe
Q 012484 22 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID 56 (462)
Q Consensus 22 ~L~~~~VlivG-~g~lG~eiaknLvl~Gv~~itlvD 56 (462)
.+.++.++|.| .+|+|.++++.|+..|. ++.++|
T Consensus 3 ~l~~k~~lITGas~GIG~aia~~la~~G~-~vii~~ 37 (286)
T PRK07791 3 LLDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVND 37 (286)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEee
Confidence 46678889988 57899999999999997 466665
No 392
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=78.92 E-value=9.6 Score=43.98 Aligned_cols=34 Identities=24% Similarity=0.441 Sum_probs=30.9
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 24 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 24 ~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
..++|+|||+|+.|...|..|++.|. ++||+|..
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~-~VtVfE~~ 338 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGF-PVTVFEAF 338 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC-eEEEEeeC
Confidence 47999999999999999999999998 59999854
No 393
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=78.89 E-value=3.2 Score=44.78 Aligned_cols=35 Identities=17% Similarity=0.450 Sum_probs=31.1
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcc
Q 012484 25 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKV 60 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v 60 (462)
...|+|||.|.+|+.+|..|++.|. +++|+|...+
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~rG~-~V~LlEk~d~ 40 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALRGL-RCILVERHDI 40 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCC-eEEEEECCCC
Confidence 4679999999999999999999997 7999997544
No 394
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=78.82 E-value=2.3 Score=45.68 Aligned_cols=31 Identities=29% Similarity=0.604 Sum_probs=24.2
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCeEEEEe
Q 012484 25 KASVCLLNCGPTGSETLKNLVLGGIGSITVID 56 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD 56 (462)
.++|+|||+|..|-..+|+|...|+ .+++++
T Consensus 1 ~krVaVIGaG~sGL~a~k~l~e~g~-~~~~fE 31 (531)
T PF00743_consen 1 AKRVAVIGAGPSGLAAAKNLLEEGL-EVTCFE 31 (531)
T ss_dssp --EEEEE--SHHHHHHHHHHHHTT--EEEEEE
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC-CCeEEe
Confidence 3799999999999999999999999 578887
No 395
>PLN00106 malate dehydrogenase
Probab=78.81 E-value=2.8 Score=42.03 Aligned_cols=36 Identities=14% Similarity=0.194 Sum_probs=31.1
Q ss_pred hcCcEEEEcC-ChhHHHHHHHHHHhCC-CeEEEEeCCc
Q 012484 24 EKASVCLLNC-GPTGSETLKNLVLGGI-GSITVIDGSK 59 (462)
Q Consensus 24 ~~~~VlivG~-g~lG~eiaknLvl~Gv-~~itlvD~d~ 59 (462)
...+|+|+|+ |.+|+.++-.|+..|. ..+.|+|-+.
T Consensus 17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~ 54 (323)
T PLN00106 17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN 54 (323)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 3578999999 9999999999998888 5799999544
No 396
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=78.78 E-value=12 Score=37.89 Aligned_cols=32 Identities=25% Similarity=0.405 Sum_probs=27.9
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCeEEEEe
Q 012484 25 KASVCLLNCGPTGSETLKNLVLGGIGSITVID 56 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD 56 (462)
..+|+|.|+|++|..++.-+...|..+++.+|
T Consensus 192 g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~ 223 (371)
T cd08281 192 GQSVAVVGLGGVGLSALLGAVAAGASQVVAVD 223 (371)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCcEEEEc
Confidence 46899999999999988888889998888776
No 397
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.72 E-value=5.8 Score=39.16 Aligned_cols=36 Identities=17% Similarity=0.135 Sum_probs=29.2
Q ss_pred HHHhcCcEEEEcC-ChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 21 AALEKASVCLLNC-GPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 21 ~~L~~~~VlivG~-g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
..|++++++|.|+ |++|.++++.|+..|. ++.+.|.
T Consensus 8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga-~Vv~~~~ 44 (306)
T PRK07792 8 TDLSGKVAVVTGAAAGLGRAEALGLARLGA-TVVVNDV 44 (306)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecC
Confidence 3567788999985 7899999999999998 4666653
No 398
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=78.71 E-value=2.1 Score=45.91 Aligned_cols=36 Identities=19% Similarity=0.214 Sum_probs=31.8
Q ss_pred HHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 21 AALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 21 ~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
..|..++|.|+|+|.+|.++|+.|...|. ++..+|+
T Consensus 134 ~~l~gktvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~ 169 (525)
T TIGR01327 134 TELYGKTLGVIGLGRIGSIVAKRAKAFGM-KVLAYDP 169 (525)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEECC
Confidence 35899999999999999999999998887 6777774
No 399
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=78.51 E-value=3.2 Score=43.63 Aligned_cols=44 Identities=25% Similarity=0.302 Sum_probs=34.2
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCC-CeEEEEeCCcccccCCCcc
Q 012484 25 KASVCLLNCGPTGSETLKNLVLGGI-GSITVIDGSKVEVGDLGNN 68 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl~Gv-~~itlvD~d~v~~~nl~r~ 68 (462)
...|+|||.|-+|..+|..|++.+- .+++|+|.+.+-..--+||
T Consensus 24 ~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~g~GaSgrn 68 (460)
T TIGR03329 24 QADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLCGAGASGRN 68 (460)
T ss_pred eeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCcccccccccc
Confidence 3689999999999999999999832 4799999887643333333
No 400
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=78.43 E-value=16 Score=36.41 Aligned_cols=32 Identities=28% Similarity=0.387 Sum_probs=28.1
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCeEEEEe
Q 012484 25 KASVCLLNCGPTGSETLKNLVLGGIGSITVID 56 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD 56 (462)
..+|+|.|+|++|..++.-+...|+..++.+|
T Consensus 161 g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~ 192 (347)
T PRK10309 161 GKNVIIIGAGTIGLLAIQCAVALGAKSVTAID 192 (347)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEC
Confidence 57999999999999999998999998777765
No 401
>CHL00194 ycf39 Ycf39; Provisional
Probab=78.41 E-value=11 Score=37.40 Aligned_cols=29 Identities=14% Similarity=0.355 Sum_probs=24.7
Q ss_pred cEEEEcC-ChhHHHHHHHHHHhCCCeEEEEe
Q 012484 27 SVCLLNC-GPTGSETLKNLVLGGIGSITVID 56 (462)
Q Consensus 27 ~VlivG~-g~lG~eiaknLvl~Gv~~itlvD 56 (462)
+|+|.|+ |-+|+.+++.|...|. +++.++
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~-~V~~l~ 31 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGY-QVRCLV 31 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCC-eEEEEE
Confidence 6999995 7799999999999996 577665
No 402
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=78.36 E-value=2.9 Score=36.73 Aligned_cols=33 Identities=15% Similarity=0.200 Sum_probs=28.5
Q ss_pred CcEEEEc-CChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 26 ASVCLLN-CGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 26 ~~VlivG-~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
+.|+|.| .+|+|.++++.|+..|-..+.+++..
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~ 34 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRS 34 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeec
Confidence 3678887 68999999999999999999998744
No 403
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=78.33 E-value=2.6 Score=42.67 Aligned_cols=33 Identities=18% Similarity=0.373 Sum_probs=29.7
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcc
Q 012484 27 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKV 60 (462)
Q Consensus 27 ~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v 60 (462)
.|+|||+|..|+-+|..|++.|+ +++|+|....
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~-~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGL-KIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCC-EEEEEeCCCc
Confidence 48999999999999999999998 6999997764
No 404
>PRK07576 short chain dehydrogenase; Provisional
Probab=78.26 E-value=2.2 Score=41.03 Aligned_cols=37 Identities=8% Similarity=0.099 Sum_probs=30.9
Q ss_pred HHHHhcCcEEEEcC-ChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 20 QAALEKASVCLLNC-GPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 20 q~~L~~~~VlivG~-g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
+.++.+++|+|.|. |++|.++++.|+..|.. ++++|.
T Consensus 4 ~~~~~~k~ilItGasggIG~~la~~l~~~G~~-V~~~~r 41 (264)
T PRK07576 4 MFDFAGKNVVVVGGTSGINLGIAQAFARAGAN-VAVASR 41 (264)
T ss_pred cccCCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeC
Confidence 34678899999985 89999999999999875 777764
No 405
>PRK12862 malic enzyme; Reviewed
Probab=78.24 E-value=2 Score=48.06 Aligned_cols=40 Identities=25% Similarity=0.243 Sum_probs=35.9
Q ss_pred HHHhcCcEEEEcCChhHHHHHHHHHHhCCC--eEEEEeCCcc
Q 012484 21 AALEKASVCLLNCGPTGSETLKNLVLGGIG--SITVIDGSKV 60 (462)
Q Consensus 21 ~~L~~~~VlivG~g~lG~eiaknLvl~Gv~--~itlvD~d~v 60 (462)
++|+..+|++.|+|+.|.-+++.|+..|+. +|.++|..-+
T Consensus 189 ~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~ 230 (763)
T PRK12862 189 KDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKGV 230 (763)
T ss_pred CChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCCCe
Confidence 478899999999999999999999999995 9999996543
No 406
>PRK08163 salicylate hydroxylase; Provisional
Probab=78.12 E-value=2.7 Score=42.92 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=30.5
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCc
Q 012484 25 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 59 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~ 59 (462)
..+|+|||.|..|..+|..|.+.|+ +++|+|...
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~-~v~v~Er~~ 37 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGI-KVKLLEQAA 37 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCC-cEEEEeeCc
Confidence 4689999999999999999999999 599998654
No 407
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=78.11 E-value=3 Score=39.38 Aligned_cols=33 Identities=18% Similarity=0.124 Sum_probs=28.4
Q ss_pred HhcCcEEEEcC-ChhHHHHHHHHHHhCCCeEEEEe
Q 012484 23 LEKASVCLLNC-GPTGSETLKNLVLGGIGSITVID 56 (462)
Q Consensus 23 L~~~~VlivG~-g~lG~eiaknLvl~Gv~~itlvD 56 (462)
|++++|+|.|+ |++|..+++.|+..|. ++.+++
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~ 36 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAG 36 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEc
Confidence 56789999996 7899999999999997 577765
No 408
>PLN02858 fructose-bisphosphate aldolase
Probab=77.84 E-value=2.9 Score=50.02 Aligned_cols=128 Identities=12% Similarity=0.099 Sum_probs=73.8
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEecC-
Q 012484 25 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY- 103 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~~- 103 (462)
..+|.+||+|.+|..+|+||+..|. .++++|...-....+. +.|-..+...++..+ +.++-+..+...
T Consensus 4 ~~~IGfIGLG~MG~~mA~~L~~~G~-~v~v~dr~~~~~~~l~--------~~Ga~~~~s~~e~a~--~advVi~~l~~~~ 72 (1378)
T PLN02858 4 AGVVGFVGLDSLSFELASSLLRSGF-KVQAFEISTPLMEKFC--------ELGGHRCDSPAEAAK--DAAALVVVLSHPD 72 (1378)
T ss_pred CCeEEEEchhHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHH--------HcCCeecCCHHHHHh--cCCEEEEEcCChH
Confidence 5689999999999999999999996 5788874422111111 112222222222222 223333333221
Q ss_pred -hhhhhcCCc---CCCCCCcEEE-EcCCChHHHHHHHHHHHHcC--ceEEEEeeccc-----eEEEEEEeCC
Q 012484 104 -PEALIEMNP---PFFSQFTLVV-ATQLGEEKMIKLDRICREAN--VMLIFARSYGL-----TGFVRISVKE 163 (462)
Q Consensus 104 -~~~~~~~~~---~~~~~~dvVi-~~~~~~~~~~~l~~~~~~~~--ip~i~~~~~G~-----~G~v~~~~~~ 163 (462)
...+..... .-+..=.+|| +++.+......+.+.+.+.+ +.|+++-+.|- .|.+.+-.++
T Consensus 73 ~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imvGG 144 (1378)
T PLN02858 73 QVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIASG 144 (1378)
T ss_pred HHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEEcC
Confidence 111111011 1122334666 45566677888999999999 88999988775 4677666655
No 409
>PRK06834 hypothetical protein; Provisional
Probab=77.77 E-value=2.7 Score=44.65 Aligned_cols=35 Identities=23% Similarity=0.482 Sum_probs=30.8
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCc
Q 012484 24 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 59 (462)
Q Consensus 24 ~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~ 59 (462)
....|+|||+|.+|.-+|-.|.+.|+. ++|+|...
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~G~~-v~vlEr~~ 36 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALAGVD-VAIVERRP 36 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHCCCc-EEEEecCC
Confidence 457899999999999999999999985 88998654
No 410
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=77.68 E-value=3.2 Score=37.17 Aligned_cols=39 Identities=21% Similarity=0.251 Sum_probs=29.4
Q ss_pred HHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcc
Q 012484 21 AALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKV 60 (462)
Q Consensus 21 ~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v 60 (462)
..|..++++|+|.|-+|.-+|+.|...|. ++++.|-|.+
T Consensus 19 ~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga-~V~V~e~DPi 57 (162)
T PF00670_consen 19 LMLAGKRVVVIGYGKVGKGIARALRGLGA-RVTVTEIDPI 57 (162)
T ss_dssp S--TTSEEEEE--SHHHHHHHHHHHHTT--EEEEE-SSHH
T ss_pred eeeCCCEEEEeCCCcccHHHHHHHhhCCC-EEEEEECChH
Confidence 35778899999999999999999999995 6899987765
No 411
>PRK08265 short chain dehydrogenase; Provisional
Probab=77.68 E-value=2.3 Score=40.72 Aligned_cols=35 Identities=17% Similarity=0.261 Sum_probs=29.6
Q ss_pred HHhcCcEEEEcC-ChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 22 ALEKASVCLLNC-GPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 22 ~L~~~~VlivG~-g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
.+++++++|.|+ |++|.++++.|+..|. +++++|.
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r 38 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDI 38 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 366789999985 8999999999999998 6777763
No 412
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.57 E-value=2.7 Score=39.49 Aligned_cols=35 Identities=11% Similarity=0.206 Sum_probs=29.4
Q ss_pred HHhcCcEEEEc-CChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 22 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 22 ~L~~~~VlivG-~g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
.+.+.+|+|.| .|++|..+++.|+..|. ++.+++.
T Consensus 4 ~~~~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r 39 (239)
T PRK07666 4 SLQGKNALITGAGRGIGRAVAIALAKEGV-NVGLLAR 39 (239)
T ss_pred cCCCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeC
Confidence 35678899998 57899999999999998 7888763
No 413
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=77.53 E-value=2.6 Score=42.99 Aligned_cols=34 Identities=18% Similarity=0.292 Sum_probs=30.4
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHh---CCCeEEEEeCC
Q 012484 24 EKASVCLLNCGPTGSETLKNLVLG---GIGSITVIDGS 58 (462)
Q Consensus 24 ~~~~VlivG~g~lG~eiaknLvl~---Gv~~itlvD~d 58 (462)
...+|+|||+|..|..+|-.|.+. |+. ++|+|..
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~-v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLP-VALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCE-EEEEeCC
Confidence 456899999999999999999998 984 9999975
No 414
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=77.41 E-value=3.3 Score=42.51 Aligned_cols=33 Identities=21% Similarity=0.292 Sum_probs=29.7
Q ss_pred CcEEEEcCChhHHHHHHHHHHh--CCCeEEEEeCCc
Q 012484 26 ASVCLLNCGPTGSETLKNLVLG--GIGSITVIDGSK 59 (462)
Q Consensus 26 ~~VlivG~g~lG~eiaknLvl~--Gv~~itlvD~d~ 59 (462)
..|+|||.|.+|+.+|..|++. |. +++|+|...
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~-~V~llE~~~ 37 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGA-RIAVLEKES 37 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCC-eEEEEeCCC
Confidence 6899999999999999999998 74 799999763
No 415
>PRK06198 short chain dehydrogenase; Provisional
Probab=77.39 E-value=2.3 Score=40.50 Aligned_cols=36 Identities=8% Similarity=0.136 Sum_probs=31.1
Q ss_pred HHhcCcEEEEcC-ChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 22 ALEKASVCLLNC-GPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 22 ~L~~~~VlivG~-g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
.+++++|+|.|+ |++|..+++.|+..|...+.+++.
T Consensus 3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r 39 (260)
T PRK06198 3 RLDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGR 39 (260)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcC
Confidence 367789999985 789999999999999987888864
No 416
>PRK08605 D-lactate dehydrogenase; Validated
Probab=77.39 E-value=2.8 Score=42.23 Aligned_cols=36 Identities=17% Similarity=0.261 Sum_probs=28.7
Q ss_pred HHHhcCcEEEEcCChhHHHHHHHHHH-hCCCeEEEEeC
Q 012484 21 AALEKASVCLLNCGPTGSETLKNLVL-GGIGSITVIDG 57 (462)
Q Consensus 21 ~~L~~~~VlivG~g~lG~eiaknLvl-~Gv~~itlvD~ 57 (462)
..|..++|.|||+|.+|..+|+.|.. .|+ .+..+|.
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~-~V~~~d~ 178 (332)
T PRK08605 142 RSIKDLKVAVIGTGRIGLAVAKIFAKGYGS-DVVAYDP 178 (332)
T ss_pred ceeCCCEEEEECCCHHHHHHHHHHHhcCCC-EEEEECC
Confidence 35899999999999999999999953 344 4666664
No 417
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=77.38 E-value=20 Score=34.87 Aligned_cols=58 Identities=17% Similarity=0.310 Sum_probs=41.8
Q ss_pred HhcCcEEEEcC-ChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEe
Q 012484 23 LEKASVCLLNC-GPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIE 101 (462)
Q Consensus 23 L~~~~VlivG~-g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~ 101 (462)
+...+++|-|+ +|+|-|+|+.|++-|.. +.|+- |. +.|-+.+++.|...+ .+++.++.
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~-liLva----------R~---------~~kL~~la~~l~~~~-~v~v~vi~ 62 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGYN-LILVA----------RR---------EDKLEALAKELEDKT-GVEVEVIP 62 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCE-EEEEe----------Cc---------HHHHHHHHHHHHHhh-CceEEEEE
Confidence 46788999995 88999999999999985 55542 21 246677777777666 56655544
No 418
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=77.36 E-value=3 Score=42.88 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=30.9
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcc
Q 012484 25 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKV 60 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v 60 (462)
..+|+|||+|..|..+|-.|.+.|+ +++|+|....
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~-~v~v~E~~~~ 52 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGL-RIALIEAQPA 52 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCC-EEEEEecCCc
Confidence 3579999999999999999999998 5999997653
No 419
>PRK07109 short chain dehydrogenase; Provisional
Probab=77.28 E-value=6.8 Score=39.29 Aligned_cols=35 Identities=11% Similarity=0.285 Sum_probs=29.0
Q ss_pred HHhcCcEEEEcC-ChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 22 ALEKASVCLLNC-GPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 22 ~L~~~~VlivG~-g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
.+.+++|+|.|+ ||+|.++++.|+..|. ++++++.
T Consensus 5 ~l~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R 40 (334)
T PRK07109 5 PIGRQVVVITGASAGVGRATARAFARRGA-KVVLLAR 40 (334)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEEC
Confidence 456788999985 8899999999999997 5777763
No 420
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=77.18 E-value=12 Score=37.81 Aligned_cols=36 Identities=22% Similarity=0.276 Sum_probs=25.8
Q ss_pred CCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEee
Q 012484 114 FFSQFTLVVATQLGEEKMIKLDRICREANVMLIFARS 150 (462)
Q Consensus 114 ~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~~ 150 (462)
.+.+.|+|+.++.+. ........+.++|+++|..+.
T Consensus 75 l~~~vDVVIdaT~~~-~~~e~a~~~~~aGk~VI~~~~ 110 (341)
T PRK04207 75 LLEKADIVVDATPGG-VGAKNKELYEKAGVKAIFQGG 110 (341)
T ss_pred hhccCCEEEECCCch-hhHHHHHHHHHCCCEEEEcCC
Confidence 456899999988664 344455677888998887654
No 421
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=77.13 E-value=2.9 Score=42.60 Aligned_cols=31 Identities=19% Similarity=0.446 Sum_probs=28.1
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 27 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 27 ~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
.|+|||+|..|..+|..|.+.|. +++|+|..
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~-~v~liE~~ 31 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGL-RVQLIEPH 31 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCC-eEEEEccC
Confidence 38999999999999999999998 69999964
No 422
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=77.11 E-value=2.8 Score=42.62 Aligned_cols=33 Identities=24% Similarity=0.303 Sum_probs=29.2
Q ss_pred cEEEEcCChhHHHHHHHHHHhC-CCeEEEEeCCcc
Q 012484 27 SVCLLNCGPTGSETLKNLVLGG-IGSITVIDGSKV 60 (462)
Q Consensus 27 ~VlivG~g~lG~eiaknLvl~G-v~~itlvD~d~v 60 (462)
.|+|||+|..|+.+|..|.+.| + +++|+|....
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~-~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKI-KIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCc-eEEEEeCCCc
Confidence 3899999999999999999999 8 5899987643
No 423
>PRK06753 hypothetical protein; Provisional
Probab=77.10 E-value=3.3 Score=41.97 Aligned_cols=32 Identities=16% Similarity=0.284 Sum_probs=29.0
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCc
Q 012484 27 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 59 (462)
Q Consensus 27 ~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~ 59 (462)
+|+|||.|..|..+|..|.+.|+. ++|++.+.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~-v~v~E~~~ 33 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHE-VKVFEKNE 33 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCc-EEEEecCC
Confidence 799999999999999999999985 89988554
No 424
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=77.07 E-value=4.7 Score=40.03 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=28.4
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 25 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
-.+|.|||+|-.|+-||..++.+|. .++++|..
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~-~V~l~D~~ 35 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGY-DVVLKDIS 35 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCC-ceEEEeCC
Confidence 3689999999999999999999654 58998855
No 425
>PRK11579 putative oxidoreductase; Provisional
Probab=77.05 E-value=23 Score=35.58 Aligned_cols=33 Identities=15% Similarity=0.130 Sum_probs=22.3
Q ss_pred CcEEEEcCChhHHH-HHHHHHH-hCCCeEEEEeCC
Q 012484 26 ASVCLLNCGPTGSE-TLKNLVL-GGIGSITVIDGS 58 (462)
Q Consensus 26 ~~VlivG~g~lG~e-iaknLvl-~Gv~~itlvD~d 58 (462)
-+|.|||+|.+|.. .+..+.. .|+.=..++|.+
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~ 39 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSD 39 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCC
Confidence 58999999999974 5666654 355444456543
No 426
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=77.00 E-value=3.1 Score=36.76 Aligned_cols=32 Identities=31% Similarity=0.441 Sum_probs=27.7
Q ss_pred EEEcCChhHHHHHHHHHHhC----CCeEEEEeCCcc
Q 012484 29 CLLNCGPTGSETLKNLVLGG----IGSITVIDGSKV 60 (462)
Q Consensus 29 livG~g~lG~eiaknLvl~G----v~~itlvD~d~v 60 (462)
+|||+|..|..+++.|++.. .-+|+|+|+...
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 48999999999999999995 679999987443
No 427
>PRK08244 hypothetical protein; Provisional
Probab=76.88 E-value=3 Score=44.23 Aligned_cols=32 Identities=28% Similarity=0.457 Sum_probs=29.2
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 26 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 26 ~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
..|+|||+|..|..+|..|.+.|+ +++|+|..
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~-~v~viEr~ 34 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGV-KTCVIERL 34 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCC-cEEEEecC
Confidence 679999999999999999999998 58999854
No 428
>PRK07589 ornithine cyclodeaminase; Validated
Probab=76.78 E-value=12 Score=37.88 Aligned_cols=79 Identities=11% Similarity=0.093 Sum_probs=52.2
Q ss_pred HHHHh---cCcEEEEcCChhHHHHHHHHH-HhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCC
Q 012484 20 QAALE---KASVCLLNCGPTGSETLKNLV-LGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAV 95 (462)
Q Consensus 20 q~~L~---~~~VlivG~g~lG~eiaknLv-l~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v 95 (462)
-+.|. ..+++|+|+|..+..-++.+. .-.+.++.+++. ...|++..++.+++ +.+
T Consensus 121 ~~~Lar~da~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r-------------------~~~~a~~~~~~~~~--~~~ 179 (346)
T PRK07589 121 AKYLARPDSRTMALIGNGAQSEFQALAFKALLGIEEIRLYDI-------------------DPAATAKLARNLAG--PGL 179 (346)
T ss_pred HHHhccCCCcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeC-------------------CHHHHHHHHHHHHh--cCC
Confidence 34554 478999999999977766544 447888888852 23477777777776 244
Q ss_pred eEEEEecChhhhhcCCcCCCCCCcEEEEcCCC
Q 012484 96 KAKFIEEYPEALIEMNPPFFSQFTLVVATQLG 127 (462)
Q Consensus 96 ~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~ 127 (462)
++.... +.+ +.+.+.|+|++++.+
T Consensus 180 ~v~~~~-~~~-------~av~~ADIIvtaT~S 203 (346)
T PRK07589 180 RIVACR-SVA-------EAVEGADIITTVTAD 203 (346)
T ss_pred cEEEeC-CHH-------HHHhcCCEEEEecCC
Confidence 554432 222 346689999988754
No 429
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=76.78 E-value=9.8 Score=37.75 Aligned_cols=32 Identities=19% Similarity=0.269 Sum_probs=30.4
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCeEEEEe
Q 012484 25 KASVCLLNCGPTGSETLKNLVLGGIGSITVID 56 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD 56 (462)
.++|.|.|+|++|..++.---.+|.++|.=+|
T Consensus 193 GstvAVfGLG~VGLav~~Gaka~GAsrIIgvD 224 (375)
T KOG0022|consen 193 GSTVAVFGLGGVGLAVAMGAKAAGASRIIGVD 224 (375)
T ss_pred CCEEEEEecchHHHHHHHhHHhcCcccEEEEe
Confidence 47899999999999999999999999999998
No 430
>PLN02780 ketoreductase/ oxidoreductase
Probab=76.72 E-value=8.8 Score=38.28 Aligned_cols=32 Identities=9% Similarity=0.072 Sum_probs=27.4
Q ss_pred hcCcEEEEcC-ChhHHHHHHHHHHhCCCeEEEEe
Q 012484 24 EKASVCLLNC-GPTGSETLKNLVLGGIGSITVID 56 (462)
Q Consensus 24 ~~~~VlivG~-g~lG~eiaknLvl~Gv~~itlvD 56 (462)
.++.++|.|+ ||+|.++|+.|+..|. ++.+++
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~ 84 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVA 84 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEE
Confidence 4678899885 7899999999999998 587776
No 431
>PRK06057 short chain dehydrogenase; Provisional
Probab=76.63 E-value=3.2 Score=39.53 Aligned_cols=34 Identities=21% Similarity=0.235 Sum_probs=29.0
Q ss_pred HHhcCcEEEEcC-ChhHHHHHHHHHHhCCCeEEEEe
Q 012484 22 ALEKASVCLLNC-GPTGSETLKNLVLGGIGSITVID 56 (462)
Q Consensus 22 ~L~~~~VlivG~-g~lG~eiaknLvl~Gv~~itlvD 56 (462)
+|.+++|+|+|+ |++|..+++.|+..|. +++++|
T Consensus 4 ~~~~~~vlItGasggIG~~~a~~l~~~G~-~v~~~~ 38 (255)
T PRK06057 4 RLAGRVAVITGGGSGIGLATARRLAAEGA-TVVVGD 38 (255)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEe
Confidence 477889999996 8999999999999996 467765
No 432
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=76.56 E-value=3.1 Score=43.27 Aligned_cols=34 Identities=12% Similarity=0.133 Sum_probs=29.7
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCc
Q 012484 25 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 59 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~ 59 (462)
-.+|.|||+|-+|..+|.+|+..|. +++.+|.+.
T Consensus 3 ~~kI~VIGlG~~G~~~A~~La~~G~-~V~~~D~~~ 36 (415)
T PRK11064 3 FETISVIGLGYIGLPTAAAFASRQK-QVIGVDINQ 36 (415)
T ss_pred ccEEEEECcchhhHHHHHHHHhCCC-EEEEEeCCH
Confidence 3689999999999999999999994 688888644
No 433
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=76.51 E-value=3 Score=42.49 Aligned_cols=33 Identities=24% Similarity=0.490 Sum_probs=29.7
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCc
Q 012484 26 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 59 (462)
Q Consensus 26 ~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~ 59 (462)
..|+|||.|..|..+|..|.+.|+ +++|+|...
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~-~v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGI-KTTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCC-eEEEecCCC
Confidence 369999999999999999999998 699999754
No 434
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=76.51 E-value=17 Score=34.00 Aligned_cols=34 Identities=21% Similarity=0.226 Sum_probs=26.2
Q ss_pred cCcEEEEcCChhHHHHHHHHH--HhCCCeEEEEeCC
Q 012484 25 KASVCLLNCGPTGSETLKNLV--LGGIGSITVIDGS 58 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLv--l~Gv~~itlvD~d 58 (462)
..+|+|+|+|.+|..+++.+. ..|+.=+-++|.+
T Consensus 84 ~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d 119 (213)
T PRK05472 84 TWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVD 119 (213)
T ss_pred CcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECC
Confidence 458999999999999998643 4566666677754
No 435
>PRK06847 hypothetical protein; Provisional
Probab=76.49 E-value=3.4 Score=41.79 Aligned_cols=34 Identities=18% Similarity=0.247 Sum_probs=30.0
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCc
Q 012484 25 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 59 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~ 59 (462)
..+|+|||.|..|..+|..|.+.|+. ++|+|...
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~-v~v~E~~~ 37 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIA-VDLVEIDP 37 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCC-EEEEecCC
Confidence 35799999999999999999999985 89998653
No 436
>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional
Probab=76.38 E-value=10 Score=42.43 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=28.6
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCC-CeEEEEeCC
Q 012484 26 ASVCLLNCGPTGSETLKNLVLGGI-GSITVIDGS 58 (462)
Q Consensus 26 ~~VlivG~g~lG~eiaknLvl~Gv-~~itlvD~d 58 (462)
.+|.|||+|.+|..+++.|...|. .+++++|.+
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~ 37 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRR 37 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 579999999999999999999996 468888753
No 437
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=76.35 E-value=27 Score=31.75 Aligned_cols=92 Identities=13% Similarity=0.115 Sum_probs=47.3
Q ss_pred chhhhHHhhcCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHh-CCCeEEEEeCCcccccCCCcccccccccccccHHHHH
Q 012484 6 TKYDRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLG-GIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSV 84 (462)
Q Consensus 6 ~rYdRQl~l~G~~~q~~L~~~~VlivG~g~lG~eiaknLvl~-Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~ 84 (462)
++|.|...-.-. ....+...+|+=+|||+- . ++..|++. +-++++-+|.+. ...+.+
T Consensus 25 ~~~~~~~~d~i~-~~~~~~~~~vLDiGcGtG-~-~s~~la~~~~~~~V~~iD~s~-------------------~~~~~a 82 (181)
T TIGR00138 25 EIWERHILDSLK-LLEYLDGKKVIDIGSGAG-F-PGIPLAIARPELKLTLLESNH-------------------KKVAFL 82 (181)
T ss_pred HHHHHHHHHHHH-HHHhcCCCeEEEecCCCC-c-cHHHHHHHCCCCeEEEEeCcH-------------------HHHHHH
Confidence 455555433221 123456889999999743 1 12222223 346788888433 123344
Q ss_pred HHHHHHhCCCCeEEEEecChhhhhcCCcCCCCCCcEEEEcC
Q 012484 85 CAFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQ 125 (462)
Q Consensus 85 ~~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~ 125 (462)
.+.+++.+-. +++++..+..++ ..-..||+|++..
T Consensus 83 ~~~~~~~~~~-~i~~i~~d~~~~-----~~~~~fD~I~s~~ 117 (181)
T TIGR00138 83 REVKAELGLN-NVEIVNGRAEDF-----QHEEQFDVITSRA 117 (181)
T ss_pred HHHHHHhCCC-CeEEEecchhhc-----cccCCccEEEehh
Confidence 4455544321 355555554432 1134799988654
No 438
>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent. This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography
Probab=76.32 E-value=3.1 Score=41.79 Aligned_cols=31 Identities=19% Similarity=0.269 Sum_probs=28.2
Q ss_pred cEEEEcC-ChhHHHHHHHHHHhCCC------eEEEEeC
Q 012484 27 SVCLLNC-GPTGSETLKNLVLGGIG------SITVIDG 57 (462)
Q Consensus 27 ~VlivG~-g~lG~eiaknLvl~Gv~------~itlvD~ 57 (462)
||+|+|+ |.+|+.++-.|+..|+- .+.|+|-
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~ 38 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDI 38 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEec
Confidence 6999999 99999999999999986 4999984
No 439
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=76.21 E-value=2.7 Score=46.77 Aligned_cols=40 Identities=25% Similarity=0.319 Sum_probs=35.9
Q ss_pred HHHhcCcEEEEcCChhHHHHHHHHHHhCCC--eEEEEeCCcc
Q 012484 21 AALEKASVCLLNCGPTGSETLKNLVLGGIG--SITVIDGSKV 60 (462)
Q Consensus 21 ~~L~~~~VlivG~g~lG~eiaknLvl~Gv~--~itlvD~d~v 60 (462)
++|...+|++.|+|+.|.-+++.|+..|+. +|.++|..-+
T Consensus 181 ~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~ 222 (752)
T PRK07232 181 KKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKGV 222 (752)
T ss_pred CChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCCCe
Confidence 478899999999999999999999999995 9999997543
No 440
>PRK12861 malic enzyme; Reviewed
Probab=76.19 E-value=2.4 Score=47.25 Aligned_cols=40 Identities=25% Similarity=0.232 Sum_probs=36.0
Q ss_pred HHHhcCcEEEEcCChhHHHHHHHHHHhCCC--eEEEEeCCcc
Q 012484 21 AALEKASVCLLNCGPTGSETLKNLVLGGIG--SITVIDGSKV 60 (462)
Q Consensus 21 ~~L~~~~VlivG~g~lG~eiaknLvl~Gv~--~itlvD~d~v 60 (462)
++|+..+|++.|+|+.|.-+++.|+..|+. +|.++|..-+
T Consensus 185 k~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~~Gl 226 (764)
T PRK12861 185 KSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEGV 226 (764)
T ss_pred CChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcCCCe
Confidence 478899999999999999999999999996 9999996543
No 441
>PRK07856 short chain dehydrogenase; Provisional
Probab=76.15 E-value=9.3 Score=36.19 Aligned_cols=36 Identities=14% Similarity=0.193 Sum_probs=30.1
Q ss_pred HhcCcEEEEcC-ChhHHHHHHHHHHhCCCeEEEEeCCc
Q 012484 23 LEKASVCLLNC-GPTGSETLKNLVLGGIGSITVIDGSK 59 (462)
Q Consensus 23 L~~~~VlivG~-g~lG~eiaknLvl~Gv~~itlvD~d~ 59 (462)
|.+++++|.|+ |++|.++++.|+..|. +++++|.+.
T Consensus 4 ~~~k~~lItGas~gIG~~la~~l~~~g~-~v~~~~r~~ 40 (252)
T PRK07856 4 LTGRVVLVTGGTRGIGAGIARAFLAAGA-TVVVCGRRA 40 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCh
Confidence 56788999985 7899999999999998 588887643
No 442
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=76.13 E-value=3.3 Score=44.19 Aligned_cols=33 Identities=15% Similarity=0.252 Sum_probs=28.9
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 25 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
-++|.|||+|..|+.||.+|+.+|. .++++|.+
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~-~V~l~d~~ 37 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGH-QVLLYDIR 37 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence 4679999999999999999999996 58888843
No 443
>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []. The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.
Probab=76.05 E-value=10 Score=37.78 Aligned_cols=74 Identities=16% Similarity=0.205 Sum_probs=45.8
Q ss_pred cCcEEEEcCChhHHHHHHHHHH-hCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEecC
Q 012484 25 KASVCLLNCGPTGSETLKNLVL-GGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY 103 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl-~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~~ 103 (462)
..++.|+|+|..|..-++.+.. .++.++.++|.+ ..+++..++++++ . .+.+.... +
T Consensus 128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~-------------------~~~~~~~~~~~~~-~-~~~v~~~~-~ 185 (313)
T PF02423_consen 128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRS-------------------PERAEAFAARLRD-L-GVPVVAVD-S 185 (313)
T ss_dssp --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SS-------------------HHHHHHHHHHHHC-C-CTCEEEES-S
T ss_pred CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccC-------------------hhHHHHHHHhhcc-c-cccceecc-c
Confidence 3589999999999888887753 569999998732 2478888888888 3 66665543 2
Q ss_pred hhhhhcCCcCCCCCCcEEEEcCCC
Q 012484 104 PEALIEMNPPFFSQFTLVVATQLG 127 (462)
Q Consensus 104 ~~~~~~~~~~~~~~~dvVi~~~~~ 127 (462)
++ +-+++.|+|++|+.+
T Consensus 186 ~~-------~av~~aDii~taT~s 202 (313)
T PF02423_consen 186 AE-------EAVRGADIIVTATPS 202 (313)
T ss_dssp HH-------HHHTTSSEEEE----
T ss_pred hh-------hhcccCCEEEEccCC
Confidence 22 235689999987755
No 444
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=76.03 E-value=3.6 Score=39.19 Aligned_cols=34 Identities=12% Similarity=0.117 Sum_probs=29.1
Q ss_pred HHhcCcEEEEc-CChhHHHHHHHHHHhCCCeEEEEe
Q 012484 22 ALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVID 56 (462)
Q Consensus 22 ~L~~~~VlivG-~g~lG~eiaknLvl~Gv~~itlvD 56 (462)
++++++|+|.| .|++|..+++.|+..|. ++++++
T Consensus 9 ~~~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~ 43 (259)
T PRK08213 9 DLSGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSA 43 (259)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEe
Confidence 46788999998 58999999999999998 577775
No 445
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=76.03 E-value=3.5 Score=42.23 Aligned_cols=31 Identities=23% Similarity=0.551 Sum_probs=28.3
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 27 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 27 ~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
.|+|||+|+.|+-.|..|++.|. +++|+|..
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G~-~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAGI-ETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCCC-cEEEEECC
Confidence 58999999999999999999997 48899876
No 446
>PLN02823 spermine synthase
Probab=76.00 E-value=13 Score=37.46 Aligned_cols=34 Identities=12% Similarity=0.254 Sum_probs=22.7
Q ss_pred hcCcEEEEcCChhHHHHHHHHHH-hCCCeEEEEeCCc
Q 012484 24 EKASVCLLNCGPTGSETLKNLVL-GGIGSITVIDGSK 59 (462)
Q Consensus 24 ~~~~VlivG~g~lG~eiaknLvl-~Gv~~itlvD~d~ 59 (462)
.-.+|+|+|.|+-+ +++.+.+ .++.+++++|-|.
T Consensus 103 ~pk~VLiiGgG~G~--~~re~l~~~~~~~v~~VEiD~ 137 (336)
T PLN02823 103 NPKTVFIMGGGEGS--TAREVLRHKTVEKVVMCDIDQ 137 (336)
T ss_pred CCCEEEEECCCchH--HHHHHHhCCCCCeEEEEECCH
Confidence 34789999987432 2333333 5789999998554
No 447
>PRK05868 hypothetical protein; Validated
Probab=75.99 E-value=3.6 Score=41.94 Aligned_cols=33 Identities=15% Similarity=0.211 Sum_probs=29.7
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCc
Q 012484 26 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 59 (462)
Q Consensus 26 ~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~ 59 (462)
.+|+|||.|..|..+|..|.+.|+. ++|+|...
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~-v~viE~~~ 34 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYS-VTMVERHP 34 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCC-EEEEcCCC
Confidence 3799999999999999999999986 99999653
No 448
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=75.98 E-value=2.9 Score=43.91 Aligned_cols=32 Identities=22% Similarity=0.336 Sum_probs=0.0
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEE
Q 012484 23 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVI 55 (462)
Q Consensus 23 L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlv 55 (462)
++.++|+|||.|..|..++-.|...| +++|+.
T Consensus 173 ~~GKrV~VIG~GaSA~di~~~l~~~g-a~vt~~ 204 (443)
T COG2072 173 LRGKRVLVIGAGASAVDIAPELAEVG-ASVTLS 204 (443)
T ss_pred cCCCeEEEECCCccHHHHHHHHHhcC-CeeEEE
No 449
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=75.80 E-value=5.9 Score=37.33 Aligned_cols=28 Identities=11% Similarity=0.070 Sum_probs=23.8
Q ss_pred HhcCcEEEEcC-ChhHHHHHHHHHHhCCC
Q 012484 23 LEKASVCLLNC-GPTGSETLKNLVLGGIG 50 (462)
Q Consensus 23 L~~~~VlivG~-g~lG~eiaknLvl~Gv~ 50 (462)
|...+|+|.|. |++|.++++.|+..|..
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~ 30 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGYD 30 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE
Confidence 45578999984 78999999999999875
No 450
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=75.71 E-value=11 Score=39.59 Aligned_cols=38 Identities=29% Similarity=0.522 Sum_probs=32.5
Q ss_pred HHhcCcEEEEcC----ChhHHHHHHHHHHhCC-CeEEEEeCCc
Q 012484 22 ALEKASVCLLNC----GPTGSETLKNLVLGGI-GSITVIDGSK 59 (462)
Q Consensus 22 ~L~~~~VlivG~----g~lG~eiaknLvl~Gv-~~itlvD~d~ 59 (462)
.++-++|+|||+ |.+|..+++||...|. |.+..|.+..
T Consensus 4 l~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~ 46 (447)
T TIGR02717 4 LFNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKA 46 (447)
T ss_pred ccCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCC
Confidence 456789999998 5689999999999998 7898888764
No 451
>PRK14967 putative methyltransferase; Provisional
Probab=75.71 E-value=16 Score=34.28 Aligned_cols=32 Identities=31% Similarity=0.334 Sum_probs=23.8
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 25 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
+.+|+-+|||. |. ++-.++..|.++++.+|.+
T Consensus 37 ~~~vLDlGcG~-G~-~~~~la~~~~~~v~~vD~s 68 (223)
T PRK14967 37 GRRVLDLCTGS-GA-LAVAAAAAGAGSVTAVDIS 68 (223)
T ss_pred CCeEEEecCCH-HH-HHHHHHHcCCCeEEEEECC
Confidence 46899999986 65 4445666687799999843
No 452
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=75.69 E-value=2.7 Score=42.14 Aligned_cols=34 Identities=9% Similarity=0.062 Sum_probs=27.8
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHH-HhCCCeEEEEe
Q 012484 22 ALEKASVCLLNCGPTGSETLKNLV-LGGIGSITVID 56 (462)
Q Consensus 22 ~L~~~~VlivG~g~lG~eiaknLv-l~Gv~~itlvD 56 (462)
.|..++|.|||+|.+|.++|+-|. -.|+ ++..+|
T Consensus 142 ~L~gktvGIiG~G~IG~~va~~l~~~fgm-~V~~~~ 176 (323)
T PRK15409 142 DVHHKTLGIVGMGRIGMALAQRAHFGFNM-PILYNA 176 (323)
T ss_pred CCCCCEEEEEcccHHHHHHHHHHHhcCCC-EEEEEC
Confidence 689999999999999999999986 4555 355555
No 453
>PRK07060 short chain dehydrogenase; Provisional
Probab=75.56 E-value=4 Score=38.28 Aligned_cols=34 Identities=15% Similarity=0.152 Sum_probs=29.2
Q ss_pred HhcCcEEEEcC-ChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 23 LEKASVCLLNC-GPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 23 L~~~~VlivG~-g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
+.+.+++|.|. |++|..+++.|+..|. ++.+++.
T Consensus 7 ~~~~~~lItGa~g~iG~~~a~~l~~~g~-~V~~~~r 41 (245)
T PRK07060 7 FSGKSVLVTGASSGIGRACAVALAQRGA-RVVAAAR 41 (245)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHCCC-EEEEEeC
Confidence 66789999997 7899999999999997 5777763
No 454
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=75.56 E-value=3.8 Score=41.38 Aligned_cols=34 Identities=18% Similarity=0.186 Sum_probs=31.0
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 25 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
..+|+|+|.|-+|.|+|..|...|+.+++|++..
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~ 205 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRR 205 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeec
Confidence 5799999999999999999999999999999753
No 455
>PRK07045 putative monooxygenase; Reviewed
Probab=75.43 E-value=3.7 Score=41.95 Aligned_cols=33 Identities=24% Similarity=0.281 Sum_probs=29.9
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCc
Q 012484 26 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 59 (462)
Q Consensus 26 ~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~ 59 (462)
.+|+|||+|..|.-.|..|.+.|+ +++|+|...
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G~-~v~v~E~~~ 38 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARGH-SVTVVERAA 38 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcCC-cEEEEeCCC
Confidence 579999999999999999999999 589998655
No 456
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=75.40 E-value=3.3 Score=42.23 Aligned_cols=33 Identities=18% Similarity=0.387 Sum_probs=29.8
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCc
Q 012484 26 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 59 (462)
Q Consensus 26 ~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~ 59 (462)
..|+|||.|..|+..|-.|++.|+ +++|+|...
T Consensus 6 ~dViIvGgG~aGl~~A~~La~~G~-~V~liE~~~ 38 (391)
T PRK08020 6 TDIAIVGGGMVGAALALGLAQHGF-SVAVLEHAA 38 (391)
T ss_pred ccEEEECcCHHHHHHHHHHhcCCC-EEEEEcCCC
Confidence 579999999999999999999998 599999754
No 457
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=75.39 E-value=4 Score=38.53 Aligned_cols=36 Identities=11% Similarity=0.169 Sum_probs=30.2
Q ss_pred HHHhcCcEEEEc-CChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 21 AALEKASVCLLN-CGPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 21 ~~L~~~~VlivG-~g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
..+++++|+|.| .|++|..+++.|+..|. ++.++|.
T Consensus 8 ~~~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r 44 (247)
T PRK08945 8 DLLKDRIILVTGAGDGIGREAALTYARHGA-TVILLGR 44 (247)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeC
Confidence 456788999998 57899999999999987 7777764
No 458
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=75.39 E-value=3.5 Score=44.04 Aligned_cols=32 Identities=19% Similarity=0.372 Sum_probs=28.7
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 26 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 26 ~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
++|.|||+|..|+.||.+|+.+|. .++++|.+
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~-~V~l~D~~ 39 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGH-TVLLYDAR 39 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCC
Confidence 679999999999999999999998 58888844
No 459
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=75.38 E-value=4 Score=36.50 Aligned_cols=32 Identities=22% Similarity=0.390 Sum_probs=26.9
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEE
Q 012484 23 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVI 55 (462)
Q Consensus 23 L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlv 55 (462)
|++++|.|+|.|+.|-..|.||--+|+ ++++-
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~-~V~Vg 33 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGV-NVIVG 33 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC--EEEEE
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCC-CEEEE
Confidence 688999999999999999999999999 55554
No 460
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=75.33 E-value=4.1 Score=38.71 Aligned_cols=34 Identities=12% Similarity=0.118 Sum_probs=28.9
Q ss_pred HhcCcEEEEcC-ChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 23 LEKASVCLLNC-GPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 23 L~~~~VlivG~-g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
|.+++|+|.|. |++|..+++.|+..|. ++.++|.
T Consensus 8 ~~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r 42 (255)
T PRK07523 8 LTGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGR 42 (255)
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeC
Confidence 56789999985 8999999999999997 5777663
No 461
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=75.27 E-value=16 Score=29.54 Aligned_cols=58 Identities=10% Similarity=-0.053 Sum_probs=36.8
Q ss_pred HHHHHhCCCCeEEEEecChhhhhcCCcCCCCCCcEEEEcCCChHHHHHHHHHHHHcCceEEEEe
Q 012484 86 AFLQELNDAVKAKFIEEYPEALIEMNPPFFSQFTLVVATQLGEEKMIKLDRICREANVMLIFAR 149 (462)
Q Consensus 86 ~~l~~lNp~v~v~~~~~~~~~~~~~~~~~~~~~dvVi~~~~~~~~~~~l~~~~~~~~ip~i~~~ 149 (462)
+.+.+.+=.+++.... ..++. +...++|+|+.+..-......+-+.+...++|+....
T Consensus 25 ~~~~~~gi~~~v~a~~--~~~~~----~~~~~~Dvill~pqi~~~~~~i~~~~~~~~ipv~~I~ 82 (95)
T TIGR00853 25 KAAEEYGVPVKIAAGS--YGAAG----EKLDDADVVLLAPQVAYMLPDLKKETDKKGIPVEVIN 82 (95)
T ss_pred HHHHHCCCcEEEEEec--HHHHH----hhcCCCCEEEECchHHHHHHHHHHHhhhcCCCEEEeC
Confidence 4555555555554433 22221 2245789999887766667788888888999976543
No 462
>PLN02740 Alcohol dehydrogenase-like
Probab=75.21 E-value=19 Score=36.74 Aligned_cols=33 Identities=21% Similarity=0.263 Sum_probs=28.9
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 25 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
..+|+|+|+|++|..++.-+...|+.+++.+|.
T Consensus 199 g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~ 231 (381)
T PLN02740 199 GSSVAIFGLGAVGLAVAEGARARGASKIIGVDI 231 (381)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcC
Confidence 468999999999999999888999988888864
No 463
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=75.21 E-value=3.7 Score=44.05 Aligned_cols=39 Identities=21% Similarity=0.365 Sum_probs=34.6
Q ss_pred HHHhcCcEEEEcCChhHHHHHHHHHH-----hCC------CeEEEEeCCc
Q 012484 21 AALEKASVCLLNCGPTGSETLKNLVL-----GGI------GSITVIDGSK 59 (462)
Q Consensus 21 ~~L~~~~VlivG~g~lG~eiaknLvl-----~Gv------~~itlvD~d~ 59 (462)
.+|...+|+++|+|+.|.-||+.|+. .|+ ++|.++|.+-
T Consensus 317 ~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~G 366 (581)
T PLN03129 317 GDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKG 366 (581)
T ss_pred CchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCC
Confidence 47888999999999999999999998 477 7999999764
No 464
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=75.19 E-value=4.1 Score=40.65 Aligned_cols=36 Identities=14% Similarity=0.197 Sum_probs=29.1
Q ss_pred HhcCcEEEEcC-ChhHHHHHHHHHHhC-CCeEEEEeCC
Q 012484 23 LEKASVCLLNC-GPTGSETLKNLVLGG-IGSITVIDGS 58 (462)
Q Consensus 23 L~~~~VlivG~-g~lG~eiaknLvl~G-v~~itlvD~d 58 (462)
+++++|+|.|. |++|+.+++.|+..| ..+++++|.+
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~ 39 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRD 39 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCC
Confidence 35678999985 889999999999987 4578888743
No 465
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=75.15 E-value=5.9 Score=38.29 Aligned_cols=36 Identities=19% Similarity=0.416 Sum_probs=30.5
Q ss_pred HHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 22 ALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 22 ~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
......|+|||+|+.|...|..|+..|.. ++|+|..
T Consensus 22 ~~~~~DVvIVGgGpAGl~AA~~la~~G~~-V~liEk~ 57 (257)
T PRK04176 22 DYLEVDVAIVGAGPSGLTAAYYLAKAGLK-VAVFERK 57 (257)
T ss_pred HhccCCEEEECccHHHHHHHHHHHhCCCe-EEEEecC
Confidence 33457899999999999999999999984 8888754
No 466
>PRK06392 homoserine dehydrogenase; Provisional
Probab=74.88 E-value=17 Score=36.44 Aligned_cols=20 Identities=15% Similarity=0.360 Sum_probs=18.8
Q ss_pred cEEEEcCChhHHHHHHHHHH
Q 012484 27 SVCLLNCGPTGSETLKNLVL 46 (462)
Q Consensus 27 ~VlivG~g~lG~eiaknLvl 46 (462)
+|.|+|+|.+|+.+++.|..
T Consensus 2 rVaIiGfG~VG~~va~~L~~ 21 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKS 21 (326)
T ss_pred EEEEECCCHHHHHHHHHHHh
Confidence 79999999999999999876
No 467
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=74.84 E-value=2.9 Score=39.98 Aligned_cols=35 Identities=17% Similarity=0.189 Sum_probs=29.5
Q ss_pred HHHhcCcEEEEcCC---hhHHHHHHHHHHhCCCeEEEEe
Q 012484 21 AALEKASVCLLNCG---PTGSETLKNLVLGGIGSITVID 56 (462)
Q Consensus 21 ~~L~~~~VlivG~g---~lG~eiaknLvl~Gv~~itlvD 56 (462)
.+|++++|+|.|++ |+|.++|+.|+..|. ++.+.+
T Consensus 2 ~~l~~k~vlVtGas~~~giG~~~a~~l~~~G~-~vi~~~ 39 (256)
T PRK12859 2 NQLKNKVAVVTGVSRLDGIGAAICKELAEAGA-DIFFTY 39 (256)
T ss_pred CCcCCcEEEEECCCCCCChHHHHHHHHHHCCC-eEEEEe
Confidence 36788999999985 799999999999998 466654
No 468
>PRK07190 hypothetical protein; Provisional
Probab=74.78 E-value=3.9 Score=43.45 Aligned_cols=33 Identities=24% Similarity=0.392 Sum_probs=29.7
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCc
Q 012484 26 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 59 (462)
Q Consensus 26 ~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~ 59 (462)
..|+|||+|++|.-.|-.|.+.|+. ++|+|...
T Consensus 6 ~dVlIVGAGPaGL~lA~~Lar~Gi~-V~llEr~~ 38 (487)
T PRK07190 6 TDVVIIGAGPVGLMCAYLGQLCGLN-TVIVDKSD 38 (487)
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCC-EEEEeCCC
Confidence 5799999999999999999999996 89998654
No 469
>PLN02306 hydroxypyruvate reductase
Probab=74.78 E-value=3.5 Score=42.40 Aligned_cols=36 Identities=19% Similarity=0.203 Sum_probs=30.6
Q ss_pred HHHhcCcEEEEcCChhHHHHHHHHH-HhCCCeEEEEeC
Q 012484 21 AALEKASVCLLNCGPTGSETLKNLV-LGGIGSITVIDG 57 (462)
Q Consensus 21 ~~L~~~~VlivG~g~lG~eiaknLv-l~Gv~~itlvD~ 57 (462)
..|.+++|.|+|.|.+|.++|+-|. -.|+ ++..+|.
T Consensus 161 ~~L~gktvGIiG~G~IG~~vA~~l~~~fGm-~V~~~d~ 197 (386)
T PLN02306 161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDL 197 (386)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHhcCCC-EEEEECC
Confidence 3589999999999999999999986 5677 5777775
No 470
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=74.77 E-value=33 Score=32.85 Aligned_cols=34 Identities=18% Similarity=0.201 Sum_probs=26.3
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCc
Q 012484 24 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 59 (462)
Q Consensus 24 ~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~ 59 (462)
...+|+-+|||. |. ++..+.+.|.++++-+|.+.
T Consensus 119 ~~~~VLDiGcGs-G~-l~i~~~~~g~~~v~giDis~ 152 (250)
T PRK00517 119 PGKTVLDVGCGS-GI-LAIAAAKLGAKKVLAVDIDP 152 (250)
T ss_pred CCCEEEEeCCcH-HH-HHHHHHHcCCCeEEEEECCH
Confidence 678999999997 64 44467788888898888543
No 471
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=74.71 E-value=3.4 Score=42.33 Aligned_cols=34 Identities=21% Similarity=0.235 Sum_probs=29.3
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCC-eEEEEeCCc
Q 012484 26 ASVCLLNCGPTGSETLKNLVLGGIG-SITVIDGSK 59 (462)
Q Consensus 26 ~~VlivG~g~lG~eiaknLvl~Gv~-~itlvD~d~ 59 (462)
..|+|||+|..|.-+|-.|.+.|.+ +++|+|...
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~ 36 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAP 36 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCC
Confidence 4699999999999999999999743 799999754
No 472
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=74.61 E-value=34 Score=32.96 Aligned_cols=93 Identities=18% Similarity=0.250 Sum_probs=56.5
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCCccccccccccccc-HHHHHHHHHHHhCCCCeEEEEecC
Q 012484 25 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLGNNFMLDESCVGES-KAKSVCAFLQELNDAVKAKFIEEY 103 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~-Ka~~~~~~l~~lNp~v~v~~~~~~ 103 (462)
..+|+|+|-.+=|-.+++.|...|+.-+.-+=.+.=...+.+ -.--+|+- -.+.+.+.+++
T Consensus 2 ~~~IlvlgGT~egr~la~~L~~~g~~v~~Svat~~g~~~~~~-----~~v~~G~l~~~~~l~~~l~~------------- 63 (248)
T PRK08057 2 MPRILLLGGTSEARALARALAAAGVDIVLSLAGRTGGPADLP-----GPVRVGGFGGAEGLAAYLRE------------- 63 (248)
T ss_pred CceEEEEechHHHHHHHHHHHhCCCeEEEEEccCCCCcccCC-----ceEEECCCCCHHHHHHHHHH-------------
Confidence 357999999999999999999888743332211110000000 00012332 33333333321
Q ss_pred hhhhhcCCcCCCCCCcEEEEcCCChHH--HHHHHHHHHHcCceEEE
Q 012484 104 PEALIEMNPPFFSQFTLVVATQLGEEK--MIKLDRICREANVMLIF 147 (462)
Q Consensus 104 ~~~~~~~~~~~~~~~dvVi~~~~~~~~--~~~l~~~~~~~~ip~i~ 147 (462)
.++++||+++.+.+. ...+.+.|++.++|++-
T Consensus 64 ------------~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR 97 (248)
T PRK08057 64 ------------EGIDLVIDATHPYAAQISANAAAACRALGIPYLR 97 (248)
T ss_pred ------------CCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEE
Confidence 167899999999876 44677899999999775
No 473
>PRK07588 hypothetical protein; Provisional
Probab=74.55 E-value=4.1 Score=41.64 Aligned_cols=31 Identities=23% Similarity=0.183 Sum_probs=28.8
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 27 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 27 ~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
+|+|||.|..|..+|..|.+.|+. ++|+|..
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~-v~v~E~~ 32 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHE-PTLIERA 32 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCc-eEEEeCC
Confidence 799999999999999999999986 9999865
No 474
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=74.41 E-value=24 Score=29.42 Aligned_cols=28 Identities=21% Similarity=0.364 Sum_probs=20.9
Q ss_pred cEEEEcC-ChhHHHHHHHHHHh-CCCeEEE
Q 012484 27 SVCLLNC-GPTGSETLKNLVLG-GIGSITV 54 (462)
Q Consensus 27 ~VlivG~-g~lG~eiaknLvl~-Gv~~itl 54 (462)
+|.|+|+ |-+|..+++.|... ++.-..+
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av 30 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVAL 30 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEE
Confidence 5899996 66888999999884 6653333
No 475
>PRK12828 short chain dehydrogenase; Provisional
Probab=74.30 E-value=3.8 Score=38.13 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=29.5
Q ss_pred HHhcCcEEEEcC-ChhHHHHHHHHHHhCCCeEEEEeC
Q 012484 22 ALEKASVCLLNC-GPTGSETLKNLVLGGIGSITVIDG 57 (462)
Q Consensus 22 ~L~~~~VlivG~-g~lG~eiaknLvl~Gv~~itlvD~ 57 (462)
++++++|+|.|. |++|..+++.|+..|.. +.+++.
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~-v~~~~r 39 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAARGAR-VALIGR 39 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHHCCCe-EEEEeC
Confidence 356789999985 88999999999999975 777764
No 476
>PLN02463 lycopene beta cyclase
Probab=74.24 E-value=3.3 Score=43.48 Aligned_cols=47 Identities=21% Similarity=0.353 Sum_probs=36.2
Q ss_pred hhHHhhcCHHHHHHHhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCc
Q 012484 9 DRQLRIWGEQGQAALEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 59 (462)
Q Consensus 9 dRQl~l~G~~~q~~L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~ 59 (462)
+=.+..++.. +.....|+|||+|..|..+|..|++.|+ +++++|...
T Consensus 15 ~~~~~~~~~~---~~~~~DVvIVGaGpAGLalA~~La~~Gl-~V~liE~~~ 61 (447)
T PLN02463 15 DFELPRFDPS---KSRVVDLVVVGGGPAGLAVAQQVSEAGL-SVCCIDPSP 61 (447)
T ss_pred cccccCCCCc---cccCceEEEECCCHHHHHHHHHHHHCCC-eEEEeccCc
Confidence 4444445543 3445689999999999999999999998 599999754
No 477
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=74.19 E-value=4.4 Score=38.55 Aligned_cols=33 Identities=15% Similarity=0.266 Sum_probs=27.9
Q ss_pred HhcCcEEEEcC-ChhHHHHHHHHHHhCCCeEEEEe
Q 012484 23 LEKASVCLLNC-GPTGSETLKNLVLGGIGSITVID 56 (462)
Q Consensus 23 L~~~~VlivG~-g~lG~eiaknLvl~Gv~~itlvD 56 (462)
+.+++|+|.|. |++|.++++.|+..|. ++.++|
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~-~v~~~~ 37 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGA-RVVIAD 37 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEc
Confidence 56788999985 8999999999999997 477765
No 478
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=74.19 E-value=3.8 Score=45.24 Aligned_cols=34 Identities=26% Similarity=0.498 Sum_probs=30.8
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 24 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 24 ~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
...+|+|||.|+.|...|..|.+.|.. ++|+|..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~-V~V~E~~ 359 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVA-VTVYDRH 359 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCe-EEEEecC
Confidence 467999999999999999999999985 9999864
No 479
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=74.18 E-value=4.3 Score=46.50 Aligned_cols=38 Identities=26% Similarity=0.386 Sum_probs=33.1
Q ss_pred HhcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCccc
Q 012484 23 LEKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVE 61 (462)
Q Consensus 23 L~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~ 61 (462)
-..++|+|||+|+.|-+.|..|++.|.. +|++|...++
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~-Vtv~E~~~i~ 418 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHN-VTAIDGLKIT 418 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCe-EEEEcccccc
Confidence 3678999999999999999999999975 9999976543
No 480
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=74.16 E-value=13 Score=36.51 Aligned_cols=31 Identities=23% Similarity=0.294 Sum_probs=26.5
Q ss_pred cEEEEc-CChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 27 SVCLLN-CGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 27 ~VlivG-~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
+|+|.| +|.+|+.+++.|+..|. +++.+|..
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g~-~V~~~~r~ 33 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQGE-EVRVLVRP 33 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCCC-EEEEEEec
Confidence 689998 58899999999999995 68888754
No 481
>PRK12829 short chain dehydrogenase; Provisional
Probab=74.15 E-value=4.5 Score=38.46 Aligned_cols=36 Identities=17% Similarity=0.200 Sum_probs=30.8
Q ss_pred HHHHhcCcEEEEcC-ChhHHHHHHHHHHhCCCeEEEEe
Q 012484 20 QAALEKASVCLLNC-GPTGSETLKNLVLGGIGSITVID 56 (462)
Q Consensus 20 q~~L~~~~VlivG~-g~lG~eiaknLvl~Gv~~itlvD 56 (462)
...+++++|+|.|+ |++|..+++.|...|.. +++++
T Consensus 6 ~~~~~~~~vlItGa~g~iG~~~a~~L~~~g~~-V~~~~ 42 (264)
T PRK12829 6 LKPLDGLRVLVTGGASGIGRAIAEAFAEAGAR-VHVCD 42 (264)
T ss_pred hhccCCCEEEEeCCCCcHHHHHHHHHHHCCCE-EEEEe
Confidence 44578899999985 88999999999999985 77776
No 482
>PRK08703 short chain dehydrogenase; Provisional
Probab=74.14 E-value=3.3 Score=38.94 Aligned_cols=33 Identities=12% Similarity=0.293 Sum_probs=28.1
Q ss_pred HhcCcEEEEcC-ChhHHHHHHHHHHhCCCeEEEEe
Q 012484 23 LEKASVCLLNC-GPTGSETLKNLVLGGIGSITVID 56 (462)
Q Consensus 23 L~~~~VlivG~-g~lG~eiaknLvl~Gv~~itlvD 56 (462)
|++++|+|.|+ |++|.++++.|...|. ++++++
T Consensus 4 l~~k~vlItG~sggiG~~la~~l~~~g~-~V~~~~ 37 (239)
T PRK08703 4 LSDKTILVTGASQGLGEQVAKAYAAAGA-TVILVA 37 (239)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEe
Confidence 66789999985 8899999999999997 477765
No 483
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=74.11 E-value=3.8 Score=45.07 Aligned_cols=35 Identities=14% Similarity=0.316 Sum_probs=31.1
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCccc
Q 012484 26 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVE 61 (462)
Q Consensus 26 ~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~ 61 (462)
..|+|||.|.+|+.+|..|++.|.+ ++|+|.+-+.
T Consensus 72 ~DVvVIGGGi~Ga~~A~~lA~rGl~-V~LvE~~d~a 106 (627)
T PLN02464 72 LDVLVVGGGATGAGVALDAATRGLR-VGLVEREDFS 106 (627)
T ss_pred cCEEEECCCHHHHHHHHHHHhCCCE-EEEEeccccC
Confidence 5799999999999999999999985 9999976543
No 484
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=74.07 E-value=3.8 Score=43.06 Aligned_cols=32 Identities=28% Similarity=0.514 Sum_probs=28.9
Q ss_pred CcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 26 ASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 26 ~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
-.|+|||+|+.|+..|..|++.|+. ++|+|..
T Consensus 40 ~DViIVGaGPAG~~aA~~LA~~G~~-VlllEr~ 71 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLAKGGIE-TFLIERK 71 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCc-EEEEecC
Confidence 4699999999999999999999985 8898865
No 485
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=73.97 E-value=19 Score=36.53 Aligned_cols=30 Identities=23% Similarity=0.284 Sum_probs=23.0
Q ss_pred cCcEEEEcC-ChhHHHHHHHHHHhCCCeEEE
Q 012484 25 KASVCLLNC-GPTGSETLKNLVLGGIGSITV 54 (462)
Q Consensus 25 ~~~VlivG~-g~lG~eiaknLvl~Gv~~itl 54 (462)
..+|.|+|+ |.+|.|+++-|...+.-.+.|
T Consensus 7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l 37 (344)
T PLN02383 7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSL 37 (344)
T ss_pred CCeEEEEcCCChHHHHHHHHHHhCCCCcceE
Confidence 468999996 668999999999866544433
No 486
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=73.96 E-value=4.1 Score=43.86 Aligned_cols=35 Identities=20% Similarity=0.473 Sum_probs=30.4
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCc
Q 012484 24 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 59 (462)
Q Consensus 24 ~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~ 59 (462)
....|+|||+|..|..+|..|.+.|+. ++|+|...
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~-v~viE~~~ 56 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVP-VVLLDDDD 56 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCc-EEEEeCCC
Confidence 456899999999999999999999995 88888543
No 487
>PRK06949 short chain dehydrogenase; Provisional
Probab=73.91 E-value=4.7 Score=38.23 Aligned_cols=33 Identities=15% Similarity=0.205 Sum_probs=28.3
Q ss_pred HhcCcEEEEcC-ChhHHHHHHHHHHhCCCeEEEEe
Q 012484 23 LEKASVCLLNC-GPTGSETLKNLVLGGIGSITVID 56 (462)
Q Consensus 23 L~~~~VlivG~-g~lG~eiaknLvl~Gv~~itlvD 56 (462)
+.+++|+|.|. |++|..+++.|+..|. ++++++
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~-~Vi~~~ 40 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGA-KVVLAS 40 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEe
Confidence 66789999985 8999999999999998 477765
No 488
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=73.87 E-value=4.1 Score=42.23 Aligned_cols=39 Identities=21% Similarity=0.210 Sum_probs=31.9
Q ss_pred cEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCcccccCCC
Q 012484 27 SVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVEVGDLG 66 (462)
Q Consensus 27 ~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~~~nl~ 66 (462)
+|.|||+|-+|..+|.+|+..|. +++++|.+.-....+.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~-~V~~~d~~~~~v~~l~ 40 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGH-EVTGVDIDQEKVDKLN 40 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCC-eEEEEECCHHHHHHhh
Confidence 69999999999999999999997 5899987654333343
No 489
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=73.80 E-value=4.5 Score=38.49 Aligned_cols=34 Identities=12% Similarity=0.181 Sum_probs=28.8
Q ss_pred HHhcCcEEEEcC-ChhHHHHHHHHHHhCCCeEEEEe
Q 012484 22 ALEKASVCLLNC-GPTGSETLKNLVLGGIGSITVID 56 (462)
Q Consensus 22 ~L~~~~VlivG~-g~lG~eiaknLvl~Gv~~itlvD 56 (462)
+|+.++++|.|+ |++|.++++.|+..|. +++++|
T Consensus 5 ~~~~k~vlVtGas~gIG~~la~~l~~~G~-~v~~~~ 39 (260)
T PRK12823 5 RFAGKVVVVTGAAQGIGRGVALRAAAEGA-RVVLVD 39 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEe
Confidence 467788999985 8899999999999997 577766
No 490
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=73.80 E-value=4.2 Score=40.83 Aligned_cols=32 Identities=16% Similarity=0.186 Sum_probs=28.5
Q ss_pred CcEEEEcC-ChhHHHHHHHHHHhCCC------eEEEEeC
Q 012484 26 ASVCLLNC-GPTGSETLKNLVLGGIG------SITVIDG 57 (462)
Q Consensus 26 ~~VlivG~-g~lG~eiaknLvl~Gv~------~itlvD~ 57 (462)
.+|+|+|+ |.+|+.++..|+..|+- ++.++|-
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~ 41 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDI 41 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEc
Confidence 47999998 99999999999998875 7999985
No 491
>PRK07774 short chain dehydrogenase; Provisional
Probab=73.78 E-value=3.7 Score=38.74 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=28.4
Q ss_pred HHhcCcEEEEcC-ChhHHHHHHHHHHhCCCeEEEEe
Q 012484 22 ALEKASVCLLNC-GPTGSETLKNLVLGGIGSITVID 56 (462)
Q Consensus 22 ~L~~~~VlivG~-g~lG~eiaknLvl~Gv~~itlvD 56 (462)
.+++++|+|.|. |++|.++++.|+..|. ++.++|
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~ 37 (250)
T PRK07774 3 RFDDKVAIVTGAAGGIGQAYAEALAREGA-SVVVAD 37 (250)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEe
Confidence 356788999986 8999999999999996 577765
No 492
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=73.75 E-value=8.4 Score=39.33 Aligned_cols=33 Identities=27% Similarity=0.483 Sum_probs=28.1
Q ss_pred EEEEcCChhHHHHHHHH--HHhCCCeEEEEeCCccc
Q 012484 28 VCLLNCGPTGSETLKNL--VLGGIGSITVIDGSKVE 61 (462)
Q Consensus 28 VlivG~g~lG~eiaknL--vl~Gv~~itlvD~d~v~ 61 (462)
|+|||+|..|..+|..| ...|. ++.|+|...-.
T Consensus 2 viIvGaGpAGlslA~~l~~~~~g~-~Vllid~~~~~ 36 (374)
T PF05834_consen 2 VIIVGAGPAGLSLARRLADARPGL-SVLLIDPKPKP 36 (374)
T ss_pred EEEECCcHHHHHHHHHHHhcCCCC-EEEEEcCCccc
Confidence 79999999999999999 77775 79999976543
No 493
>PRK06475 salicylate hydroxylase; Provisional
Probab=73.72 E-value=4.3 Score=41.69 Aligned_cols=34 Identities=21% Similarity=0.364 Sum_probs=30.2
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCc
Q 012484 25 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 59 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~ 59 (462)
+.+|+|||+|..|..+|-.|.+.|+. ++|+|...
T Consensus 2 ~~~V~IvGgGiaGl~~A~~L~~~G~~-V~i~E~~~ 35 (400)
T PRK06475 2 RGSPLIAGAGVAGLSAALELAARGWA-VTIIEKAQ 35 (400)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCc-EEEEecCC
Confidence 37899999999999999999999985 99998643
No 494
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=73.69 E-value=4 Score=44.22 Aligned_cols=35 Identities=20% Similarity=0.359 Sum_probs=31.0
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCc
Q 012484 24 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 59 (462)
Q Consensus 24 ~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~ 59 (462)
...+|+|||+|+.|..+|..|.+.|. +++++|...
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~~ 170 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAGP 170 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence 46799999999999999999999998 599998543
No 495
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=73.68 E-value=16 Score=37.04 Aligned_cols=31 Identities=23% Similarity=0.211 Sum_probs=26.0
Q ss_pred cCcEEEEc-CChhHHHHHHHHHHhCCCeEEEE
Q 012484 25 KASVCLLN-CGPTGSETLKNLVLGGIGSITVI 55 (462)
Q Consensus 25 ~~~VlivG-~g~lG~eiaknLvl~Gv~~itlv 55 (462)
..+|+|+| .|-+|.++++.|.....-+++.+
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~ 34 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPWFEVTAL 34 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCCceEEEE
Confidence 46899998 68899999999987766677776
No 496
>PRK06823 ornithine cyclodeaminase; Validated
Probab=73.67 E-value=17 Score=36.34 Aligned_cols=74 Identities=14% Similarity=0.107 Sum_probs=49.6
Q ss_pred cCcEEEEcCChhHHHHHHHHH-HhCCCeEEEEeCCcccccCCCcccccccccccccHHHHHHHHHHHhCCCCeEEEEecC
Q 012484 25 KASVCLLNCGPTGSETLKNLV-LGGIGSITVIDGSKVEVGDLGNNFMLDESCVGESKAKSVCAFLQELNDAVKAKFIEEY 103 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLv-l~Gv~~itlvD~d~v~~~nl~r~f~~~~~dvG~~Ka~~~~~~l~~lNp~v~v~~~~~~ 103 (462)
.++++|+|+|..+-.-+..+. ...+.++.++|. ...|++..++.+++.. +.+.... +
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r-------------------~~~~a~~~~~~~~~~~--~~v~~~~-~ 185 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGR-------------------SETALEEYRQYAQALG--FAVNTTL-D 185 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECC-------------------CHHHHHHHHHHHHhcC--CcEEEEC-C
Confidence 478999999999988777765 345778888752 2347777777776543 3443322 2
Q ss_pred hhhhhcCCcCCCCCCcEEEEcCCC
Q 012484 104 PEALIEMNPPFFSQFTLVVATQLG 127 (462)
Q Consensus 104 ~~~~~~~~~~~~~~~dvVi~~~~~ 127 (462)
. .+.+.+.|+|++++.+
T Consensus 186 ~-------~~av~~ADIV~taT~s 202 (315)
T PRK06823 186 A-------AEVAHAANLIVTTTPS 202 (315)
T ss_pred H-------HHHhcCCCEEEEecCC
Confidence 1 2346789999987754
No 497
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=73.66 E-value=5.2 Score=42.74 Aligned_cols=36 Identities=8% Similarity=0.247 Sum_probs=31.1
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCccc
Q 012484 25 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSKVE 61 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~v~ 61 (462)
...|+|||.|.+|+.+|..|++.|.+ ++|+|..-+.
T Consensus 6 ~~DVvIIGGGi~G~~~A~~la~rGl~-V~LvEk~d~~ 41 (508)
T PRK12266 6 TYDLLVIGGGINGAGIARDAAGRGLS-VLLCEQDDLA 41 (508)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCe-EEEEecCCCC
Confidence 35799999999999999999999986 8999875443
No 498
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=73.57 E-value=9.1 Score=36.34 Aligned_cols=35 Identities=23% Similarity=0.192 Sum_probs=29.5
Q ss_pred HhcCcEEEEcCC---hhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 23 LEKASVCLLNCG---PTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 23 L~~~~VlivG~g---~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
|+.++|+|.|++ |+|..+++.|+..|. ++.+++..
T Consensus 3 l~~k~vlItGas~~~giG~~la~~l~~~G~-~vi~~~r~ 40 (256)
T PRK12748 3 LMKKIALVTGASRLNGIGAAVCRRLAAKGI-DIFFTYWS 40 (256)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHcCC-cEEEEcCC
Confidence 456789999985 799999999999997 78888754
No 499
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=73.48 E-value=4.4 Score=42.55 Aligned_cols=34 Identities=26% Similarity=0.476 Sum_probs=30.6
Q ss_pred hcCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCC
Q 012484 24 EKASVCLLNCGPTGSETLKNLVLGGIGSITVIDGS 58 (462)
Q Consensus 24 ~~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d 58 (462)
...+|+|||.|..|.+.|..|.+.|. +++|+|..
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~-~V~vie~~ 165 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGH-SVTVFEAL 165 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCC-cEEEEecC
Confidence 46789999999999999999999997 69999864
No 500
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=73.46 E-value=4.6 Score=40.79 Aligned_cols=34 Identities=24% Similarity=0.353 Sum_probs=30.2
Q ss_pred cCcEEEEcCChhHHHHHHHHHHhCCCeEEEEeCCc
Q 012484 25 KASVCLLNCGPTGSETLKNLVLGGIGSITVIDGSK 59 (462)
Q Consensus 25 ~~~VlivG~g~lG~eiaknLvl~Gv~~itlvD~d~ 59 (462)
..+|+|||+|..|.++|..|.+.|. +++++|...
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~-~v~lie~~~ 51 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGY-EVHVYDKLP 51 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCC-cEEEEeCCC
Confidence 4689999999999999999999997 699998643
Done!