Query 012485
Match_columns 462
No_of_seqs 110 out of 241
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 10:22:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012485.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012485hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u9w_A Leukotriene A-4 hydrola 73.6 26 0.00088 37.5 12.4 90 33-138 17-106 (608)
2 2x3c_A Toxic extracellular end 60.5 4.3 0.00015 40.8 2.8 17 50-66 38-54 (343)
3 3q48_A Chaperone CUPB2; IG fol 31.9 24 0.00081 33.9 2.7 57 1-63 1-57 (257)
4 2xdt_A Endoplasmic reticulum a 29.2 3.3E+02 0.011 30.3 11.9 95 29-138 10-108 (897)
5 2qsv_A Uncharacterized protein 28.6 69 0.0024 29.4 5.3 23 116-138 162-185 (220)
6 2g30_A AP-2 complex subunit be 25.2 80 0.0027 30.2 5.1 84 28-145 31-118 (258)
7 2k6w_A Putative uncharacterize 23.2 3.3E+02 0.011 22.7 9.2 26 112-137 81-106 (120)
8 1yew_A Particulate methane mon 17.9 7.6E+02 0.026 24.9 11.8 85 35-139 253-337 (382)
9 3ije_A Integrin alpha-V; integ 14.1 6.9E+02 0.024 28.2 10.4 86 41-140 617-703 (967)
10 3fcs_A Integrin, alpha 2B; bet 12.8 9.2E+02 0.032 27.1 10.9 82 43-138 625-707 (959)
No 1
>3u9w_A Leukotriene A-4 hydrolase; hydrolase-hydrolase inhibitor complex; HET: 28P; 1.25A {Homo sapiens} PDB: 3cho_A* 3chp_A* 3chq_A* 3chr_A* 3chs_A* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A* 3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A* 3ftz_A* 3fu0_A* 3fu3_A* ...
Probab=73.63 E-value=26 Score=37.51 Aligned_cols=90 Identities=11% Similarity=0.141 Sum_probs=57.7
Q ss_pred EEeeEEEEEEcCCCeEEEEEEEEEEeCCCCCccEEEEEcCCCcccceeEEEEEEcCCccccceeeeeeeeeecCCCCCCC
Q 012485 33 RINNAERRIDLSTHIVKVFLTLKVENTGKTSASEILLAFPPTQVDHLAFLEALAATGKKKKKTYVSLAVKPTQLPDAPNE 112 (462)
Q Consensus 33 ~n~~v~R~IdL~~~~vk~~~~i~ikN~g~~~~~~y~~~l~~~~~~~ls~~~a~~~~~~~k~~~~~~l~v~~~~~~~~~~~ 112 (462)
+.-++.=.+|+.+....-+++|+++...+ ..++..+-. .++..-++.+++.+ +...... .....
T Consensus 17 ~Hy~L~l~vD~~~~~~~G~v~I~~~~~~~-~~~~i~Ld~-----~~L~I~~V~v~g~~--------~~~~~~~--~~~~~ 80 (608)
T 3u9w_A 17 KHLHLRCSVDFTRRTLTGTAALTVQSQED-NLRSLVLDT-----KDLTIEKVVINGQE--------VKYALGE--RQSYK 80 (608)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEEECST-TEEEEEEEE-----SSCEEEEEEETTEE--------CCEEECC--CCGGG
T ss_pred eEEEEEEEEECCCCEEEEEEEEEEEECCC-CCCEEEEEC-----CCCEEEEEEECCEE--------cceeccc--ccccc
Confidence 44566778999999999889999987543 245554432 23444455554322 2222111 01123
Q ss_pred ceEEEEEeCCCCCCCCeEEEEEEEEE
Q 012485 113 TNYYTIVLANPLNTGETATLEILYIL 138 (462)
Q Consensus 113 ~~~~~I~Lp~pl~p~~~~~l~v~~~~ 138 (462)
...+.|.||.++.+|++.+|.|+|..
T Consensus 81 ~~~l~I~l~~~l~~g~~~~l~I~y~~ 106 (608)
T 3u9w_A 81 GSPMEISLPIALSKNQEIVIEISFET 106 (608)
T ss_dssp CEEEEEEEEEEECTTCEEEEEEEEEC
T ss_pred CceEEEEcCCCCCCCCEEEEEEEEEE
Confidence 45689999999999999999999864
No 2
>2x3c_A Toxic extracellular endopeptidase; hydrolase; 1.99A {Aeromonas salmonicida subsp} PDB: 2x3a_A 2x3b_A
Probab=60.54 E-value=4.3 Score=40.79 Aligned_cols=17 Identities=29% Similarity=0.362 Sum_probs=13.3
Q ss_pred EEEEEEEEeCCCCCccE
Q 012485 50 VFLTLKVENTGKTSASE 66 (462)
Q Consensus 50 ~~~~i~ikN~g~~~~~~ 66 (462)
..++++++|.|+++.+-
T Consensus 38 ~~vk~tvtN~g~~~~~l 54 (343)
T 2x3c_A 38 VRVNLTLTNTGDKPIRL 54 (343)
T ss_dssp CEEEEEEEECSSSCEEE
T ss_pred eEEEEEEEeCCCCceEe
Confidence 45568899999998763
No 3
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa}
Probab=31.93 E-value=24 Score=33.85 Aligned_cols=57 Identities=16% Similarity=0.125 Sum_probs=16.4
Q ss_pred CcccchhhHHHHHHHHHHHHHHhhccCCCCCeEEeeEEEEEEcCCCeEEEEEEEEEEeCCCCC
Q 012485 1 MEALLRPRIMLSLTIILIPIFLFISGASSHQIRINNAERRIDLSTHIVKVFLTLKVENTGKTS 63 (462)
Q Consensus 1 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~n~~v~R~IdL~~~~vk~~~~i~ikN~g~~~ 63 (462)
|.+.|+-+++...++++++++++.+ +.+.+... -+|.|-=.++ + .+.+.++|.|+.|
T Consensus 1 ~~~~~~~~~~~~~~l~~~l~~~~~~--a~A~v~i~-~TRvIy~~~~--k-~~sl~l~N~~~~P 57 (257)
T 3q48_A 1 MAPLMHRFHSFVAASAVAIALCVGT--AHAGLIAQ-GTRVVFPASE--R-EVTLRVSNTSGTP 57 (257)
T ss_dssp --------------------------------CCS-CSEEEEETTC--S-EEEEEEEECSSSC
T ss_pred CCcccccchHHHHHHHHHHHHHHHH--hceeEEEc-ceEEEEeCCC--c-EEEEEEEeCCCCe
Confidence 6778888876555444443333221 22233332 3576655554 2 3678999987654
No 4
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein, metal-binding, metalloprotease, protease, hydrolase, adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB: 2yd0_A* 3qnf_A* 3mdj_A*
Probab=29.18 E-value=3.3e+02 Score=30.33 Aligned_cols=95 Identities=17% Similarity=0.148 Sum_probs=53.1
Q ss_pred CCCeEEeeEEE--EEEcCCCeEEEEEEEEEEeCCCCCccEEEEEcCCCcccceeEEEEEEcCCccccceeeee--eeeee
Q 012485 29 SHQIRINNAER--RIDLSTHIVKVFLTLKVENTGKTSASEILLAFPPTQVDHLAFLEALAATGKKKKKTYVSL--AVKPT 104 (462)
Q Consensus 29 ~~~~~n~~v~R--~IdL~~~~vk~~~~i~ikN~g~~~~~~y~~~l~~~~~~~ls~~~a~~~~~~~k~~~~~~l--~v~~~ 104 (462)
|..++-.++.= .+|+++....-+++|+++.. ++.+...+.. .++..-++.+.+...+ .+ .+...
T Consensus 10 p~~~~p~hY~l~L~~d~~~~~f~G~v~I~~~~~--~~~~~I~L~~-----~~l~I~~v~v~~~~~~-----~~~~~~~~~ 77 (897)
T 2xdt_A 10 PEYVIPVHYDLLIHANLTTLTFWGTTKVEITAS--QPTSTIILHS-----HHLQISRATLRKGAGE-----RLSEEPLQV 77 (897)
T ss_dssp CSSEEEEEEEEEEEEETTTTEEEEEEEEEEEES--SCEEEEEEEC-----SSCEEEEEEEEEC---------CEEEECEE
T ss_pred CCCcEeeEEEEEEEEecCCCeEEEEEEEEEEEE--cCCCEEEEEe-----CCCEEEEEEEEecCCc-----cccccccee
Confidence 44555544443 34777777777777777764 4556555543 2344444444321101 12 22111
Q ss_pred cCCCCCCCceEEEEEeCCCCCCCCeEEEEEEEEE
Q 012485 105 QLPDAPNETNYYTIVLANPLNTGETATLEILYIL 138 (462)
Q Consensus 105 ~~~~~~~~~~~~~I~Lp~pl~p~~~~~l~v~~~~ 138 (462)
. . ......+.|.||+||++|++.+|.|+|.-
T Consensus 78 ~-~--~~~~~~l~i~l~~~L~~g~~~~L~i~y~g 108 (897)
T 2xdt_A 78 L-E--HPRQEQIALLAPEPLLVGLPYTVVIHYAG 108 (897)
T ss_dssp E-E--ETTTTEEEEEEEEEECTTCCEEEEEEEEE
T ss_pred E-E--cCCCcEEEEEeCCccCCCCEEEEEEEEEE
Confidence 1 0 01234688999999999998999888774
No 5
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}
Probab=28.57 E-value=69 Score=29.36 Aligned_cols=23 Identities=22% Similarity=0.187 Sum_probs=17.0
Q ss_pred EEEEeC-CCCCCCCeEEEEEEEEE
Q 012485 116 YTIVLA-NPLNTGETATLEILYIL 138 (462)
Q Consensus 116 ~~I~Lp-~pl~p~~~~~l~v~~~~ 138 (462)
..+.++ .|++||++..|.|.|.-
T Consensus 162 t~~~~~~~~i~PGe~~~i~v~~~~ 185 (220)
T 2qsv_A 162 LTAVPDRTEIKPGGSTLLRIAVDP 185 (220)
T ss_dssp EEEEESCSEECTTCEEEEEEEECH
T ss_pred EeeecCCccCCCCCEEEEEEEEec
Confidence 345554 47999999998888753
No 6
>2g30_A AP-2 complex subunit beta-1; alpha-helical ARH peptide, platform domain, sandwich domain, endocytosis, adaptor, endocytosis/exocytosis complex; 1.60A {Homo sapiens} SCOP: b.1.10.1 d.105.1.1 PDB: 1e42_A 3h1z_A 3hs9_A 2iv9_A 2iv8_A
Probab=25.18 E-value=80 Score=30.17 Aligned_cols=84 Identities=8% Similarity=0.179 Sum_probs=53.8
Q ss_pred CCCCeEEeeEEEEEEcCCCeEEEE----EEEEEEeCCCCCccEEEEEcCCCcccceeEEEEEEcCCccccceeeeeeeee
Q 012485 28 SSHQIRINNAERRIDLSTHIVKVF----LTLKVENTGKTSASEILLAFPPTQVDHLAFLEALAATGKKKKKTYVSLAVKP 103 (462)
Q Consensus 28 ~~~~~~n~~v~R~IdL~~~~vk~~----~~i~ikN~g~~~~~~y~~~l~~~~~~~ls~~~a~~~~~~~k~~~~~~l~v~~ 103 (462)
+...|-..+=-+-++++.++.|.. .++++.|....+.+.|.+.+.+.- +-+.+
T Consensus 31 p~~~~l~~~~g~GLeI~g~f~r~~g~i~l~l~~~N~s~~~is~faIQfNkNs-----------------------FGL~p 87 (258)
T 2g30_A 31 PKAVWLPAVKAKGLEISGTFTHRQGHIYMEMNFTNKALQHMTDFAIQFNKNS-----------------------FGVIP 87 (258)
T ss_dssp CCEEEECGGGTTTEEEEEEEEEETTEEEEEEEEEECSSSCBCCCEEEECCBT-----------------------TCCEE
T ss_pred chhhcccccCCCcEEEEEEEEEeCCEEEEEEEEecCCccceeeeEEEEcccc-----------------------cCccc
Confidence 344665554445566666666655 889999988888887766665321 11111
Q ss_pred ecCCCCCCCceEEEEEeCCCCCCCCeEEEEEEEEEccccccc
Q 012485 104 TQLPDAPNETNYYTIVLANPLNTGETATLEILYILTHSLEPF 145 (462)
Q Consensus 104 ~~~~~~~~~~~~~~I~Lp~pl~p~~~~~l~v~~~~~~~~~P~ 145 (462)
.. -..+|.||+||++.+..|-..+++.....
T Consensus 88 ~~-----------~~~~~~~L~pgqs~~v~lpl~~~~~~~~~ 118 (258)
T 2g30_A 88 ST-----------PLAIHTPLMPNQSIDVSLPLNTLGPVMKM 118 (258)
T ss_dssp SS-----------CCCCCSCBCTTCEEEEEEEEESCSCBCCC
T ss_pred Cc-----------cccCCCccCCCCcEEEEEeeecCCcccCC
Confidence 11 01367789999999999988877765544
No 7
>2k6w_A Putative uncharacterized protein TTHA1943; PCUA, copper transfer protein, metal transport; NMR {Thermus thermophilus} PDB: 2k6y_A 2k6z_A 2k70_A
Probab=23.21 E-value=3.3e+02 Score=22.73 Aligned_cols=26 Identities=27% Similarity=0.595 Sum_probs=20.0
Q ss_pred CceEEEEEeCCCCCCCCeEEEEEEEE
Q 012485 112 ETNYYTIVLANPLNTGETATLEILYI 137 (462)
Q Consensus 112 ~~~~~~I~Lp~pl~p~~~~~l~v~~~ 137 (462)
+...-...|..|+++|+++.+++.+-
T Consensus 81 G~HvML~gl~~~l~~G~~v~ltL~Fe 106 (120)
T 2k6w_A 81 GYHFMLLGLKRPLKAGEEVELDLLFA 106 (120)
T ss_dssp TEEEEEEEESSCBCTTCEEEEEEEET
T ss_pred ceEEEEeCCCCCCCCCCEEEEEEEEC
Confidence 34555677889999999988887663
No 8
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=17.88 E-value=7.6e+02 Score=24.86 Aligned_cols=85 Identities=13% Similarity=0.170 Sum_probs=45.5
Q ss_pred eeEEEEEEcCCCeEEEEEEEEEEeCCCCCccEEEEEcCCCcccceeEEEEEEcCCccccceeeeeeeeeecCCCCCCCce
Q 012485 35 NNAERRIDLSTHIVKVFLTLKVENTGKTSASEILLAFPPTQVDHLAFLEALAATGKKKKKTYVSLAVKPTQLPDAPNETN 114 (462)
Q Consensus 35 ~~v~R~IdL~~~~vk~~~~i~ikN~g~~~~~~y~~~l~~~~~~~ls~~~a~~~~~~~k~~~~~~l~v~~~~~~~~~~~~~ 114 (462)
.-..-+.++-+.-.+ .+++++|.|++|+.-=-| ...++.++.+.....+ .. .+- +.+. . .
T Consensus 253 ~v~~A~Y~vpgR~l~--~~~~VtN~g~~pvrlgeF-----~tA~vrFln~~~~~~~-~~---~P~--~lla-----~--~ 312 (382)
T 1yew_A 253 KVEDATYRVPGRAMR--MKLTITNHGNSPIRLGEF-----YTASVRFLDSDVYKDT-TG---YPE--DLLA-----E--D 312 (382)
T ss_dssp EEEEEEEESSCSEEE--EEEEEEECSSSCEEEEEE-----ECSSCEEECTTTCCCC-SC---CCG--GGEE-----T--T
T ss_pred EeeccEEecCCcEEE--EEEEEEcCCCCceEeeeE-----EeccEEEeCCcccccC-CC---ChH--Hhhc-----c--C
Confidence 333457777777554 447889999998762222 1244555442110000 00 000 0000 0 0
Q ss_pred EEEEEeCCCCCCCCeEEEEEEEEEc
Q 012485 115 YYTIVLANPLNTGETATLEILYILT 139 (462)
Q Consensus 115 ~~~I~Lp~pl~p~~~~~l~v~~~~~ 139 (462)
-..|.=+.|++|||+.++.|+..=.
T Consensus 313 gL~vsd~~pI~PGETr~~~v~a~da 337 (382)
T 1yew_A 313 GLSVSDNSPLAPGETRTVDVTASDA 337 (382)
T ss_dssp CEEESCCSCBCTTCEEEEEEEEECH
T ss_pred CceeCCCCCcCCCceeEEEEEeehH
Confidence 1355556899999999999987643
No 9
>3ije_A Integrin alpha-V; integrin structure, activation, EGF domains, FLIM, cell SIGN cell adhesion, cleavage on PAIR of basic residues; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 4g1e_A* 4g1m_A* 1jv2_A* 1l5g_A* 1m1x_A* 1u8c_A*
Probab=14.14 E-value=6.9e+02 Score=28.16 Aligned_cols=86 Identities=17% Similarity=0.321 Sum_probs=52.9
Q ss_pred EEcCCCeEEEEEEEEEEeCCCCC-ccEEEEEcCCCcccceeEEEEEEcCCccccceeeeeeeeeecCCCCCCCceEEEEE
Q 012485 41 IDLSTHIVKVFLTLKVENTGKTS-ASEILLAFPPTQVDHLAFLEALAATGKKKKKTYVSLAVKPTQLPDAPNETNYYTIV 119 (462)
Q Consensus 41 IdL~~~~vk~~~~i~ikN~g~~~-~~~y~~~l~~~~~~~ls~~~a~~~~~~~k~~~~~~l~v~~~~~~~~~~~~~~~~I~ 119 (462)
+-++.+ -+.+.+++++|.|+.+ .....+.+|+ .|.|..+...... ...+.+.... +.......-.
T Consensus 617 ~~vg~~-~~l~l~v~v~N~gE~Ay~t~l~~~~p~----~l~~~~v~~~~~~-----~~~~~C~~~~----~n~~~~~~C~ 682 (967)
T 3ije_A 617 IYIGDD-NPLTLIVKAQNQGEGAYEAELIVSIPL----QADFIGVVRNNEA-----LARLSCAFKT----ENQTRQVVCD 682 (967)
T ss_dssp EETTSC-EEEEEEEEEEECSSCEESCEEEEECCT----TEEEEEECCSCTT-----SBCCEEEEEC----SSSCCEEEEE
T ss_pred EEecCC-cEEEEEEEEEeCCCCcccceEEEEeCC----CCCeeeeecccCC-----cccceeecCC----CCCceEEEee
Confidence 334433 4778899999988542 3344677774 4777665432111 0235565321 1122345778
Q ss_pred eCCCCCCCCeEEEEEEEEEcc
Q 012485 120 LANPLNTGETATLEILYILTH 140 (462)
Q Consensus 120 Lp~pl~p~~~~~l~v~~~~~~ 140 (462)
|..|++.|+++++.+.+-..+
T Consensus 683 lgnP~~~~~~v~f~l~f~~~~ 703 (967)
T 3ije_A 683 LGNPMKAGTQLLAGLRFSVHQ 703 (967)
T ss_dssp CCSEECTTCEEEEEEEEEECC
T ss_pred CCCCcCCCCEEEEEEEEeccc
Confidence 899999999999999887553
No 10
>3fcs_A Integrin, alpha 2B; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens}
Probab=12.83 E-value=9.2e+02 Score=27.14 Aligned_cols=82 Identities=18% Similarity=0.330 Sum_probs=50.6
Q ss_pred cCCCeEEEEEEEEEEeCCCCC-ccEEEEEcCCCcccceeEEEEEEcCCccccceeeeeeeeeecCCCCCCCceEEEEEeC
Q 012485 43 LSTHIVKVFLTLKVENTGKTS-ASEILLAFPPTQVDHLAFLEALAATGKKKKKTYVSLAVKPTQLPDAPNETNYYTIVLA 121 (462)
Q Consensus 43 L~~~~vk~~~~i~ikN~g~~~-~~~y~~~l~~~~~~~ls~~~a~~~~~~~k~~~~~~l~v~~~~~~~~~~~~~~~~I~Lp 121 (462)
++++ -+.+.+++++|.|+.+ .....+.+|+ +|.|..+...... ...+.++... +.......-.|.
T Consensus 625 vg~~-~~l~l~v~v~N~GEdAY~t~l~~~~p~----~l~y~~v~~~~~~-----~~~~~C~~~~----~~~~~~v~C~lg 690 (959)
T 3fcs_A 625 VGAD-NVLELQMDAANEGEGAYEAELAVHLPQ----GAHYMRALSNVEG-----FERLICNQKK----ENETRVVLCELG 690 (959)
T ss_dssp TTSC-CCEEEEEEEEECSSCBTTEEEEEECCT----TEEEEEEEECC-------CCBCCEEEEC----SSSSCEEEEEEE
T ss_pred ecCC-cEEEEEEEEecCCCCcccceEEEEeCC----CCceeeeecccCC-----CcCceEeccC----CCcceeEEeecC
Confidence 4444 3678889999988553 4455677885 4777766532111 0234555422 112234566788
Q ss_pred CCCCCCCeEEEEEEEEE
Q 012485 122 NPLNTGETATLEILYIL 138 (462)
Q Consensus 122 ~pl~p~~~~~l~v~~~~ 138 (462)
.|+..|+++++.+.+-.
T Consensus 691 nP~~~~~~v~f~l~f~~ 707 (959)
T 3fcs_A 691 NPMKKNAQIGIAMLVSV 707 (959)
T ss_dssp TTBCTTEEEEEEEEEEE
T ss_pred CcccCCCeEEEEEEEEc
Confidence 99999999998888743
Done!