Query 012485
Match_columns 462
No_of_seqs 110 out of 241
Neff 6.1
Searched_HMMs 13730
Date Mon Mar 25 10:22:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012485.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/012485hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1jv2a2 b.1.15.1 (A:599-737) T 70.5 16 0.0011 29.4 10.3 85 41-139 19-104 (139)
2 d3b7sa2 b.98.1.1 (A:1-208) Leu 66.3 35 0.0025 28.5 12.5 93 30-138 14-108 (208)
3 d1e42a1 b.1.10.1 (A:705-824) B 27.5 33 0.0024 27.2 4.7 63 49-145 31-93 (120)
4 d1x9la_ b.2.10.1 (A:) Hypothet 15.9 75 0.0054 25.6 4.6 25 112-136 106-130 (149)
5 d1t6aa_ d.129.8.1 (A:) Rbstp22 13.8 31 0.0023 27.3 1.4 31 351-384 61-91 (124)
6 d2bi0a1 d.38.1.4 (A:8-185) Hyp 12.9 1.7E+02 0.012 23.6 6.3 33 114-146 86-118 (178)
7 d1qbaa2 b.2.2.3 (A:28-200) Bac 11.4 3.7E+02 0.027 21.8 8.2 25 114-138 84-111 (173)
8 d1pfoa_ f.9.1.1 (A:) Perfringo 10.4 1.2E+02 0.0087 29.1 4.7 56 329-390 371-427 (471)
9 d1mvma_ b.121.5.2 (A:) Parvovi 9.5 28 0.002 34.6 -0.3 15 317-331 435-449 (549)
10 d2pr9a1 b.2.7.1 (A:159-435) Se 9.0 1.1E+02 0.0077 26.7 3.6 37 357-393 145-182 (277)
No 1
>d1jv2a2 b.1.15.1 (A:599-737) Thigh, calf-1 and calf-2 domains of integrin alpha {Human (Homo sapiens) [TaxId: 9606]}
Probab=70.54 E-value=16 Score=29.37 Aligned_cols=85 Identities=18% Similarity=0.307 Sum_probs=53.9
Q ss_pred EEcCCCeEEEEEEEEEEeCCCCC-ccEEEEEcCCCcccceeEEEEEEcCCccccceeeeeeeeeecCCCCCCCceEEEEE
Q 012485 41 IDLSTHIVKVFLTLKVENTGKTS-ASEILLAFPPTQVDHLAFLEALAATGKKKKKTYVSLAVKPTQLPDAPNETNYYTIV 119 (462)
Q Consensus 41 IdL~~~~vk~~~~i~ikN~g~~~-~~~y~~~l~~~~~~~ls~~~a~~~~~~~k~~~~~~l~v~~~~~~~~~~~~~~~~I~ 119 (462)
+-++++ -....+++++|.|+.+ .+..++.+|++ +.|..+....... ..+.+.... +.+.....-.
T Consensus 19 l~vGs~-~~l~l~v~V~N~GE~AY~a~l~v~~P~~----L~y~~v~~~~~~~-----~~v~C~~~~----~~~~~~v~C~ 84 (139)
T d1jv2a2 19 IYIGDD-NPLTLIVKAQNQGEGAYEAELIVSIPLQ----ADFIGVVRNNEAL-----ARLSCAFKT----ENQTRQVVCD 84 (139)
T ss_dssp EESSSC-EEEEEEEEEEECSSCBSSCEEEEECCTT----CCEEEECCSSTTS-----BCCCCEEEE----SSSCEEEEEE
T ss_pred EEECCC-CEEEEEEEEEECCCChhhEEEEEEcCCC----CCEEeeeecCCCC-----ceeeccccC----CCCcEEEEEE
Confidence 335544 4688889999998654 34556777754 6666553222111 234555432 1234457889
Q ss_pred eCCCCCCCCeEEEEEEEEEc
Q 012485 120 LANPLNTGETATLEILYILT 139 (462)
Q Consensus 120 Lp~pl~p~~~~~l~v~~~~~ 139 (462)
|..|++.|+++++.+.+-..
T Consensus 85 lGnP~~~~~~~~f~l~f~~~ 104 (139)
T d1jv2a2 85 LGNPMKAGTQLLAGLRFSVH 104 (139)
T ss_dssp CCSSBCSSCBCCEEEEEEEC
T ss_pred CCCcccCCCEEEEEEEEEee
Confidence 99999999999988887654
No 2
>d3b7sa2 b.98.1.1 (A:1-208) Leukotriene A4 hydrolase N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=66.29 E-value=35 Score=28.52 Aligned_cols=93 Identities=12% Similarity=0.153 Sum_probs=56.2
Q ss_pred CCeEEee--EEEEEEcCCCeEEEEEEEEEEeCCCCCccEEEEEcCCCcccceeEEEEEEcCCccccceeeeeeeeeecCC
Q 012485 30 HQIRINN--AERRIDLSTHIVKVFLTLKVENTGKTSASEILLAFPPTQVDHLAFLEALAATGKKKKKTYVSLAVKPTQLP 107 (462)
Q Consensus 30 ~~~~n~~--v~R~IdL~~~~vk~~~~i~ikN~g~~~~~~y~~~l~~~~~~~ls~~~a~~~~~~~k~~~~~~l~v~~~~~~ 107 (462)
...+... +.=++|+.+....-+++|+++-..+ ..++..+.. .++..-++...+.+ +..+...
T Consensus 14 ~~~~v~Hy~L~l~~d~~~~~~~G~v~I~~~~~~~-~~~~i~Ld~-----~~l~I~~v~~~g~~--------~~~~~~~-- 77 (208)
T d3b7sa2 14 SVCRTKHLHLRCSVDFTRRTLTGTAALTVQSQED-NLRSLVLDT-----KDLTIEKVVINGQE--------VKYALGE-- 77 (208)
T ss_dssp TTEEEEEEEEEEEEETTTTEEEEEEEEEEEECST-TEEEEEEEE-----SSCEEEEEEETTEE--------CCEEECC--
T ss_pred ccceEEEEEEEEEEcCCCCEEEEEEEEEEEECcC-CccEeeeec-----cCCEEEEEEECCcc--------cceEecc--
Confidence 3444444 4567788888888888888875432 235444432 23555556655432 2222211
Q ss_pred CCCCCceEEEEEeCCCCCCCCeEEEEEEEEE
Q 012485 108 DAPNETNYYTIVLANPLNTGETATLEILYIL 138 (462)
Q Consensus 108 ~~~~~~~~~~I~Lp~pl~p~~~~~l~v~~~~ 138 (462)
..+.......|.++.++.+|++.+|.+.|..
T Consensus 78 ~~~~~~~~l~i~~~~~~~~g~~~~l~i~y~~ 108 (208)
T d3b7sa2 78 RQSYKGSPMEISLPIALSKNQEIVIEISFET 108 (208)
T ss_dssp CCGGGCEEEEEEEEEEECTTCEEEEEEEEEC
T ss_pred ceeeccceeeeecccccCCCCEEEEEEEEEE
Confidence 0112335678999999999999999998864
No 3
>d1e42a1 b.1.10.1 (A:705-824) Beta2-adaptin AP2 ear domain, N-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.55 E-value=33 Score=27.16 Aligned_cols=63 Identities=6% Similarity=0.232 Sum_probs=42.0
Q ss_pred EEEEEEEEEeCCCCCccEEEEEcCCCcccceeEEEEEEcCCccccceeeeeeeeeecCCCCCCCceEEEEEeCCCCCCCC
Q 012485 49 KVFLTLKVENTGKTSASEILLAFPPTQVDHLAFLEALAATGKKKKKTYVSLAVKPTQLPDAPNETNYYTIVLANPLNTGE 128 (462)
Q Consensus 49 k~~~~i~ikN~g~~~~~~y~~~l~~~~~~~ls~~~a~~~~~~~k~~~~~~l~v~~~~~~~~~~~~~~~~I~Lp~pl~p~~ 128 (462)
+...+++++|.+..+.+.|.+.+.+.-.. |... . -..+|.||.||+
T Consensus 31 ~i~l~l~itN~s~~~ls~faIQfNKNsFG---------------------L~P~--~-----------~l~~p~~l~pgq 76 (120)
T d1e42a1 31 HIYMEMNFTNKALQHMTDFAIQFNKNSFG---------------------VIPS--T-----------PLAIHTPLMPNQ 76 (120)
T ss_dssp EEEEEEEEEECSSSCBCCCEEEECCBTTC---------------------CEES--S-----------CCCCCSCBCTTC
T ss_pred EEEEEEEEecCCCCccchheEEEcccccc---------------------cccC--C-----------cccCCCccCCCC
Confidence 45588999999988888887777643211 1111 0 012578999999
Q ss_pred eEEEEEEEEEccccccc
Q 012485 129 TATLEILYILTHSLEPF 145 (462)
Q Consensus 129 ~~~l~v~~~~~~~~~P~ 145 (462)
+.+..+-..+.......
T Consensus 77 S~~~~lpl~~~~~~~~~ 93 (120)
T d1e42a1 77 SIDVSLPLNTLGPVMKM 93 (120)
T ss_dssp EEEEEEEEESCSCBCCC
T ss_pred EEEEEEEEecCCcccCC
Confidence 99998888876654433
No 4
>d1x9la_ b.2.10.1 (A:) Hypothetical protein DR1885 {Deinococcus radiodurans [TaxId: 1299]}
Probab=15.91 E-value=75 Score=25.64 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=18.4
Q ss_pred CceEEEEEeCCCCCCCCeEEEEEEE
Q 012485 112 ETNYYTIVLANPLNTGETATLEILY 136 (462)
Q Consensus 112 ~~~~~~I~Lp~pl~p~~~~~l~v~~ 136 (462)
+...--..|..|+++|+++.+++.+
T Consensus 106 G~HlML~gl~~~l~~Gd~v~ltL~f 130 (149)
T d1x9la_ 106 GDHVMLMGLKRPLKVGETVNITLKA 130 (149)
T ss_dssp SSEEEEEEECSCCCTTEEEEEEECB
T ss_pred ceEEEEcCCCCCCCCCCEEEEEEEE
Confidence 4455667788999999988776643
No 5
>d1t6aa_ d.129.8.1 (A:) Rbstp2229 protein {Bacillus stearothermophilus [TaxId: 1422]}
Probab=13.83 E-value=31 Score=27.26 Aligned_cols=31 Identities=29% Similarity=0.531 Sum_probs=18.6
Q ss_pred cCCceEEEEEecCCCcceEEEEEEEEEEcCCCCc
Q 012485 351 SDGRRYLNFTFGCPLVETVVDKLTIKVVLPEGAK 384 (462)
Q Consensus 351 ~~~~~yL~vp~~~~~~d~~vd~~~l~IiLPEGA~ 384 (462)
++++.|=.+-++.+.++ ++--+.|.||+||+
T Consensus 61 g~~~rY~~I~vgVg~~~---e~sfIqi~LP~~AT 91 (124)
T d1t6aa_ 61 GDGRLYKGMAISVRTAG---EETFIDIALPPGAT 91 (124)
T ss_dssp ESSTTCCEEEEEEEEET---TEEEEEEECCTTCC
T ss_pred cCCCceeeEEEeeccCC---ceeeEEEECCCCCC
Confidence 45666622223223333 55668999999997
No 6
>d2bi0a1 d.38.1.4 (A:8-185) Hypothetical protein Rv0216/MT0226 {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=12.91 E-value=1.7e+02 Score=23.58 Aligned_cols=33 Identities=15% Similarity=0.095 Sum_probs=25.5
Q ss_pred eEEEEEeCCCCCCCCeEEEEEEEEEcccccccC
Q 012485 114 NYYTIVLANPLNTGETATLEILYILTHSLEPFP 146 (462)
Q Consensus 114 ~~~~I~Lp~pl~p~~~~~l~v~~~~~~~~~P~P 146 (462)
.+-.+++++|+.+|++++...+..=...-+..|
T Consensus 86 g~~~~rf~~PV~~GDTl~~~~eV~~~r~~~srp 118 (178)
T d2bi0a1 86 FYRGLRFHRFPAVGDTLYTRTEVVGLRANSPKP 118 (178)
T ss_dssp EEECEEBSSCCBTTCEEEEEEEEEEEEECCCCT
T ss_pred EeeeeEEeeeccCCCEEEEEEEEEEEEecCCCC
Confidence 345689999999999999998887665555444
No 7
>d1qbaa2 b.2.2.3 (A:28-200) Bacterial chitobiase, n-terminal domain {Serratia marcescens [TaxId: 615]}
Probab=11.36 E-value=3.7e+02 Score=21.78 Aligned_cols=25 Identities=8% Similarity=0.266 Sum_probs=17.6
Q ss_pred eEEEEEeCC---CCCCCCeEEEEEEEEE
Q 012485 114 NYYTIVLAN---PLNTGETATLEILYIL 138 (462)
Q Consensus 114 ~~~~I~Lp~---pl~p~~~~~l~v~~~~ 138 (462)
.+|+|+--. +++||++++|.+..-+
T Consensus 84 Dl~kitPt~~F~gl~~G~s~~i~f~~~~ 111 (173)
T d1qbaa2 84 DLYKLEPTAKFSGFPAGKAVEIPVVAEY 111 (173)
T ss_dssp TEEEEEECTTCCCBCTTCEEEEEEEEES
T ss_pred CEEEEeEcccCCCcCCCCEEEEEEEccc
Confidence 467877433 6999998888776543
No 8
>d1pfoa_ f.9.1.1 (A:) Perfringolysin {Clostridium perfringens [TaxId: 1502]}
Probab=10.38 E-value=1.2e+02 Score=29.14 Aligned_cols=56 Identities=14% Similarity=0.259 Sum_probs=36.5
Q ss_pred CCceeeEEEeecCCcccceeeccCCceEEE-EEecCCCcceEEEEEEEEEEcCCCCcCCeeeC
Q 012485 329 GGWRATFVIGYGLPLEDFLFESSDGRRYLN-FTFGCPLVETVVDKLTIKVVLPEGAKGPSAVV 390 (462)
Q Consensus 329 GGWk~~FtiGyn~pl~~~L~~~~~~~~yL~-vp~~~~~~d~~vd~~~l~IiLPEGA~~i~v~~ 390 (462)
||.=-.|.|-|.- +-+ +.+|+..+. -.-.-.-.| ---++...|.||.+|+||+|.-
T Consensus 371 g~yva~f~i~wde----~~y-d~~g~e~~~~k~w~gn~~~-~ta~f~t~i~l~~narni~v~~ 427 (471)
T d1pfoa_ 371 GAYVAQFEVAWDE----VSY-DKEGNEVLTHKTWDGNYQD-KTAHYSTVIPLEANARNIRIKA 427 (471)
T ss_dssp CSSCEEEEEEEEE----EEE-CTTSCEEEEEEECTTTTCC-BCSSEEEEEEECTTEEEEEEEE
T ss_pred ceEEEEEEEEeee----ccc-CCCCcEecccccccCCCcc-ccccceEEEecCCCceeeEEEE
Confidence 8888899999983 333 355666532 222222222 2246788999999999999864
No 9
>d1mvma_ b.121.5.2 (A:) Parvovirus (panleukopenia virus) capsid protein {Murine minute virus, strain i [TaxId: 10794]}
Probab=9.54 E-value=28 Score=34.56 Aligned_cols=15 Identities=27% Similarity=0.479 Sum_probs=13.2
Q ss_pred EEEEEecCCcccCCc
Q 012485 317 SELEIEPRYPLFGGW 331 (462)
Q Consensus 317 ~~l~l~PRfPLfGGW 331 (462)
-.++.+||+|++|||
T Consensus 435 Pd~dfkp~~p~~gGf 449 (549)
T d1mvma_ 435 LDLEHKPRLHITAPF 449 (549)
T ss_dssp CCCSSCCSCCSSCSB
T ss_pred CCCCcCCCCcccCCc
Confidence 357799999999999
No 10
>d2pr9a1 b.2.7.1 (A:159-435) Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=8.97 E-value=1.1e+02 Score=26.65 Aligned_cols=37 Identities=8% Similarity=0.202 Sum_probs=27.0
Q ss_pred EEEEecCCC-cceEEEEEEEEEEcCCCCcCCeeeCCcc
Q 012485 357 LNFTFGCPL-VETVVDKLTIKVVLPEGAKGPSAVVPFP 393 (462)
Q Consensus 357 L~vp~~~~~-~d~~vd~~~l~IiLPEGA~~i~v~~P~~ 393 (462)
+.+-+...+ .....+++.++|=+|.++.++++.+.-.
T Consensus 145 ~~i~l~~~~~~~~~~~~v~I~iP~P~~~~~~~~~~~~G 182 (277)
T d2pr9a1 145 VKVVIKSNFKPSLLAQKIEVRIPTPLNTSGVQVICMKG 182 (277)
T ss_dssp EEEEEEECSCTTCEEEEEEEEEECCTTEEEEEEEESSS
T ss_pred EEEEEEeccCCCeeeeEEEEEeeCCCcccCceEEecCc
Confidence 444444332 4668899999999999999988876543
Done!