Your job contains 1 sequence.
>012486
MSPESRQSPPLEHVHATKRRRTLKFEQLDENDNQTKSQTATITETETLTWKPDQCRNPPT
SNRFEPIRSSRNRYKRRKRKHKSVTDDHRQWTFSSRDLSKFKDKFVVVSYNILGVENALK
HPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDHFDDLDDLLQMDGFRGVYKA
RTGDANDGCAIFWKEKLFTLLHQENIEFQNFGLRHNVAQLCVLKMNQSLLESAEESSLSM
VSQSQSLVVGNIHVLFNPNRGDIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSPNSA
LYQFLASSELDVCQHDRRHISGQFAKCRDIDFQKRNSTSDWISISRPLLYQWTDVELRLA
TGCEGVTELQHQLNLCSAYFGIPGSHRTRDNLGEPLATSYHSKFMGTVDYIWHTEELVPV
RVLETLPVNILRRNGGLPSERWGSDHLALVCELAFANNGDGT
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 012486
(462 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:504956231 - symbol:AT1G73875 "AT1G73875" speci... 1203 2.4e-122 1
TAIR|locus:2832132 - symbol:AT5G11350 "AT5G11350" species... 502 2.5e-74 2
ZFIN|ZDB-GENE-030131-6498 - symbol:angel2 "angel homolog ... 347 3.7e-31 1
FB|FBgn0016762 - symbol:angel "angel" species:7227 "Droso... 258 1.9e-26 2
MGI|MGI:1915987 - symbol:Angel1 "angel homolog 1 (Drosoph... 294 6.6e-26 2
TAIR|locus:2076446 - symbol:AT3G58580 "AT3G58580" species... 169 9.2e-26 3
TAIR|locus:2076426 - symbol:AT3G58560 "AT3G58560" species... 163 1.0e-23 3
MGI|MGI:1196310 - symbol:Angel2 "angel homolog 2 (Drosoph... 279 1.9e-23 2
MGI|MGI:2443226 - symbol:Pde12 "phosphodiesterase 12" spe... 232 1.8e-22 2
UNIPROTKB|F1SGK9 - symbol:PDE12 "Uncharacterized protein"... 223 7.2e-21 2
RGD|1310975 - symbol:Pde12 "phosphodiesterase 12" species... 222 9.5e-21 2
UNIPROTKB|Q6L8Q7 - symbol:PDE12 "2',5'-phosphodiesterase ... 222 9.6e-21 2
UNIPROTKB|Q08DF7 - symbol:PDE12 "2',5'-phosphodiesterase ... 218 2.2e-20 2
UNIPROTKB|Q9UK39 - symbol:CCRN4L "Nocturnin" species:9606... 168 2.4e-20 3
UNIPROTKB|E2R412 - symbol:PDE12 "Uncharacterized protein"... 217 3.0e-20 2
UNIPROTKB|F1PFN1 - symbol:CCRN4L "Uncharacterized protein... 168 3.2e-20 3
UNIPROTKB|I3LN01 - symbol:CCRN4L "Uncharacterized protein... 166 2.1e-19 3
UNIPROTKB|A2VE74 - symbol:CCRN4L "Uncharacterized protein... 168 3.1e-19 3
MGI|MGI:109382 - symbol:Ccrn4l "CCR4 carbon catabolite re... 169 1.6e-18 3
TAIR|locus:2028611 - symbol:AT1G31500 species:3702 "Arabi... 168 2.2e-18 3
ZFIN|ZDB-GENE-050208-306 - symbol:ccrn4la "CCR4 carbon ca... 155 4.6e-18 3
POMBASE|SPCC31H12.08c - symbol:ccr4 "CCR4-Not complex sub... 180 1.3e-17 3
UNIPROTKB|F1NVT2 - symbol:CCRN4L "Uncharacterized protein... 164 1.6e-17 3
ZFIN|ZDB-GENE-060519-25 - symbol:pde12 "phosphodiesterase... 141 2.1e-17 3
UNIPROTKB|F1NGS9 - symbol:PDE12 "Uncharacterized protein"... 173 4.2e-16 2
UNIPROTKB|E1C678 - symbol:CNOT6 "Uncharacterized protein"... 153 4.0e-15 3
UNIPROTKB|A6QR51 - symbol:CNOT6 "CNOT6 protein" species:9... 148 4.7e-15 3
ZFIN|ZDB-GENE-071004-97 - symbol:zgc:171797 "zgc:171797" ... 138 5.0e-15 3
UNIPROTKB|E2QS92 - symbol:CNOT6 "Uncharacterized protein"... 148 6.0e-15 3
UNIPROTKB|F1S5Q4 - symbol:CNOT6 "Uncharacterized protein"... 146 8.7e-15 3
UNIPROTKB|Q9ULM6 - symbol:CNOT6 "CCR4-NOT transcription c... 147 1.6e-14 3
UNIPROTKB|Q5BJ41 - symbol:cnot6 "CCR4-NOT transcription c... 148 1.9e-14 3
MGI|MGI:2144529 - symbol:Cnot6 "CCR4-NOT transcription co... 148 1.9e-14 3
RGD|1310783 - symbol:Cnot6 "CCR4-NOT transcription comple... 148 1.9e-14 3
UNIPROTKB|E1BE73 - symbol:LOC100849029 "Uncharacterized p... 151 2.3e-14 3
ASPGD|ASPL0000009331 - symbol:ccr4 species:162425 "Emeric... 145 3.6e-14 2
RGD|1309128 - symbol:Cnot6l "CCR4-NOT transcription compl... 154 4.0e-14 3
MGI|MGI:2443154 - symbol:Cnot6l "CCR4-NOT transcription c... 154 4.1e-14 3
WB|WBGene00000376 - symbol:ccr-4 species:6239 "Caenorhabd... 143 5.1e-14 3
UNIPROTKB|Q96LI5 - symbol:CNOT6L "CCR4-NOT transcription ... 151 9.0e-14 3
ZFIN|ZDB-GENE-050522-302 - symbol:cnot6l "CCR4-NOT transc... 142 1.2e-13 3
UNIPROTKB|E1C5L3 - symbol:CNOT6L "Uncharacterized protein... 150 1.4e-13 3
SGD|S000000019 - symbol:CCR4 "Component of the CCR4-NOT t... 164 3.9e-13 2
FB|FBgn0011725 - symbol:twin "twin" species:7227 "Drosoph... 145 7.7e-13 3
RGD|1587344 - symbol:Ccrn4l "CCR4 carbon catabolite repre... 174 1.6e-12 2
CGD|CAL0002486 - symbol:CCR4 species:5476 "Candida albica... 169 2.8e-11 2
UNIPROTKB|Q5A761 - symbol:CCR4 "Glucose-repressible alcoh... 169 2.8e-11 2
FB|FBgn0261808 - symbol:cu "curled" species:7227 "Drosoph... 140 2.5e-10 3
TAIR|locus:2028696 - symbol:AT1G31530 "AT1G31530" species... 133 1.0e-09 2
UNIPROTKB|F1RYS2 - symbol:CNOT6L "Uncharacterized protein... 137 3.0e-08 2
CGD|CAL0006120 - symbol:orf19.5527 species:5476 "Candida ... 145 3.4e-08 2
SGD|S000004898 - symbol:NGL2 "Protein involved in 5.8S rR... 139 5.2e-08 3
SGD|S000004587 - symbol:NGL3 "3'-5' exonuclease specific ... 142 1.4e-07 3
GENEDB_PFALCIPARUM|PFC0850c - symbol:PFC0850c "hypothetic... 129 1.5e-07 3
UNIPROTKB|O77366 - symbol:PFC0850c "Endonuclease/exonucle... 129 1.5e-07 3
POMBASE|SPBC9B6.11c - symbol:SPBC9B6.11c "CCR4/nocturin f... 96 4.6e-07 3
SGD|S000005402 - symbol:NGL1 "Putative endonuclease" spec... 93 5.8e-06 2
TAIR|locus:2204863 - symbol:AT1G02270 "AT1G02270" species... 118 0.00056 1
>TAIR|locus:504956231 [details] [associations]
symbol:AT1G73875 "AT1G73875" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] Pfam:PF03372 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0046872
GO:GO:0006351 GO:GO:0003723 GO:GO:0090305 eggNOG:COG5239
InterPro:IPR005135 SUPFAM:SSF56219 EMBL:AC016662 GO:GO:0004535
EMBL:BT010832 EMBL:BT011303 EMBL:AK230427 IPI:IPI00529493
IPI:IPI00915125 IPI:IPI00915130 RefSeq:NP_683491.2 UniGene:At.45165
ProteinModelPortal:Q0WKY2 SMR:Q0WKY2 EnsemblPlants:AT1G73875.1
GeneID:843724 KEGG:ath:AT1G73875 TAIR:At1g73875
HOGENOM:HOG000241777 OMA:ICKEISR PhylomeDB:Q0WKY2
ProtClustDB:CLSN2915147 Genevestigator:Q0WKY2 Uniprot:Q0WKY2
Length = 454
Score = 1203 (428.5 bits), Expect = 2.4e-122, P = 2.4e-122
Identities = 247/461 (53%), Positives = 304/461 (65%)
Query: 1 MSPESRQSPPLEHVHATKRRRTLKFEQLDENDNQXXXXXXXXXXXXXXXWKPDQCRNPPT 60
MS R++ + TKR+R EQ EN + KP + P
Sbjct: 1 MSGYERKNTTANSITITKRKRNSISEQ-SENVYEKSNRKESITL------KPHRSFTPGF 53
Query: 61 SNR-FEPIXXXXXXXXXXXXXXXXVTDD-HRQWTFSSRDLSKFKDKFVVVSYNILGVENA 118
S R +P+ ++ R+W FS+ + DK V+VSYN+LGV+NA
Sbjct: 54 SQRDCKPVRHSKSSLRRRRRTKEKISSSVEREWVFSANNFENLADKLVLVSYNLLGVDNA 113
Query: 119 LKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDHFDDLDDLLQMDGFRGVY 178
H DLY VP K L+W RRK LI +E+S YNASILCLQEVD FDDLD LL+ GFRGV+
Sbjct: 114 SNHMDLYYNVPRKHLEWSRRKHLICKEISRYNASILCLQEVDRFDDLDVLLKNRGFRGVH 173
Query: 179 KARTGDANDGCAIFWKEKLFTLLHQENIEFQNFGLRHNVAQLCVLKMNXXXXXXXXXXXX 238
K+RTG+A+DGCAIFWKE LF LL ++IEF FG+R+NVAQLCVL+MN
Sbjct: 174 KSRTGEASDGCAIFWKENLFELLDHQHIEFDKFGMRNNVAQLCVLEMNCEEDPKSKLRVR 233
Query: 239 XXXXXXXXXXXGNIHVLFNPNRGDIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSPN 298
GNIHVLFNP RGDIKLGQ+RLFLEKAYKLSQEWG IPV +AGDLNS+P
Sbjct: 234 SSDPRRLVV--GNIHVLFNPKRGDIKLGQVRLFLEKAYKLSQEWGNIPVAIAGDLNSTPQ 291
Query: 299 SALYQFLASSELDVCQHDRRHISGQF-AKCRDIDFQKRNSTSDWISISRPLLYQWTDVEL 357
SA+Y F+AS++LD HDRR ISGQ + ++ F+ + S SIS LL +W+ EL
Sbjct: 292 SAIYDFIASADLDTQLHDRRQISGQTEVEPKERSFRNHYAFSASASISGSLLNEWSQEEL 351
Query: 358 RLATGCEGVTELQHQLNLCSAYFGIPGSHRTRDNLGEPLATSYHSKFMGTVDYIWHTEEL 417
+LATG + T +QHQL L SAY G+PG++RTRD GEPLAT+YHS+F+GTVDYIWHT+EL
Sbjct: 352 QLATGGQETTHVQHQLKLNSAYSGVPGTYRTRDQRGEPLATTYHSRFLGTVDYIWHTKEL 411
Query: 418 VPVRVLETLPVNILRRNGGLPSERWGSDHLALVCELAFANN 458
VPVRVLETLP ++LRR GGLPSE WGSDHLA+ CEL F N+
Sbjct: 412 VPVRVLETLPADVLRRTGGLPSENWGSDHLAIACELGFVND 452
>TAIR|locus:2832132 [details] [associations]
symbol:AT5G11350 "AT5G11350" species:3702 "Arabidopsis
thaliana" [GO:0003824 "catalytic activity" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] Pfam:PF03372 GO:GO:0005634
GO:GO:0005737 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 GO:GO:0090305
eggNOG:COG5239 InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0004535
EMBL:AL360314 EMBL:AY069916 EMBL:AY143977 IPI:IPI00526280
RefSeq:NP_196696.2 UniGene:At.27820 ProteinModelPortal:Q8VYU4
SMR:Q8VYU4 PaxDb:Q8VYU4 PRIDE:Q8VYU4 EnsemblPlants:AT5G11350.1
GeneID:831006 KEGG:ath:AT5G11350 TAIR:At5g11350
HOGENOM:HOG000111455 InParanoid:Q8VYU4 OMA:LYFHIPR PhylomeDB:Q8VYU4
ProtClustDB:CLSN2690149 Genevestigator:Q8VYU4 Uniprot:Q8VYU4
Length = 754
Score = 502 (181.8 bits), Expect = 2.5e-74, Sum P(2) = 2.5e-74
Identities = 101/239 (42%), Positives = 142/239 (59%)
Query: 87 DHRQWTFSSRDLSKFKDKFVVVSYNILGVENALKH-PDLYDKVPPKFLKWERRKKLIREE 145
D+R+W ++ S +KFVV+SYNIL A H LY +P L W RK + E
Sbjct: 165 DYREWEYAKTPPSPGSEKFVVLSYNILADYLANDHWRSLYFHIPRNMLSWGWRKSKLVFE 224
Query: 146 MSSYNASILCLQEVDHFDDLDDLLQMDGFRGVYKARTGDANDGCAIFWKEKLFTLLHQEN 205
+S ++A I+CLQEVD F DL++ ++ G+ ++K RTG+A DGCAIFW+ F L+H+E+
Sbjct: 225 LSLWSADIMCLQEVDKFQDLEEEMKHRGYSAIWKMRTGNAVDGCAIFWRSNRFKLVHEES 284
Query: 206 IEFQNFGLRHNVAQLCVLK-MNXXXXXXXXXXXXXXXXXXXXXXXGNIHVLFNPNRGDIK 264
I+F GLR NVAQ+CVL+ + NIHVLFNP RGD K
Sbjct: 285 IQFNQLGLRDNVAQICVLETLLTSHTKENETPPPESSAGSHRVVICNIHVLFNPKRGDFK 344
Query: 265 LGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSPNSALYQFLASSELDVCQHDRRHISGQ 323
LGQ+R L+KA+ +S+ W P++L GD N +P S LY F++ +LD+ R +SGQ
Sbjct: 345 LGQVRTLLDKAHAVSKLWDDAPIVLCGDFNCTPKSPLYNFISDRKLDLSGLARDKVSGQ 403
Score = 273 (101.2 bits), Expect = 2.5e-74, Sum P(2) = 2.5e-74
Identities = 53/107 (49%), Positives = 68/107 (63%)
Query: 352 WTDVELRLATGCEGVTELQHQLNLCSAYFGIPGSHRTRDNLGEPLATSYHSKFMGTVDYI 411
WT +E+ ATG T ++H L L S Y + G TRD GEP+ TSYH FMGTVDYI
Sbjct: 642 WTPMEIATATGDPERTTVEHALELKSTYSEVEGQANTRDENGEPVVTSYHRCFMGTVDYI 701
Query: 412 WHTEELVPVRVLETLPVNILRRNGGLPSERWGSDHLALVCELAFANN 458
W +E L VRVL +P ++ G P+ +WGSDH+ALV ELAF ++
Sbjct: 702 WRSEGLQTVRVLAPIPKQAMQWTPGFPTPKWGSDHIALVSELAFCSS 748
>ZFIN|ZDB-GENE-030131-6498 [details] [associations]
symbol:angel2 "angel homolog 2 (Drosophila)"
species:7955 "Danio rerio" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] Pfam:PF03372
ZFIN:ZDB-GENE-030131-6498 eggNOG:COG5239
GeneTree:ENSGT00550000074364 HOGENOM:HOG000033940
HOVERGEN:HBG057379 InterPro:IPR005135 SUPFAM:SSF56219 EMBL:BX649591
EMBL:BC124747 IPI:IPI00506952 RefSeq:NP_001025131.1
UniGene:Dr.105422 ProteinModelPortal:Q5RGT6
Ensembl:ENSDART00000036371 GeneID:562704 KEGG:dre:562704 CTD:90806
InParanoid:A0AUR1 OMA:EQTERES OrthoDB:EOG4255SF NextBio:20884542
ArrayExpress:Q5RGT6 Bgee:Q5RGT6 Uniprot:Q5RGT6
Length = 569
Score = 347 (127.2 bits), Expect = 3.7e-31, P = 3.7e-31
Identities = 126/391 (32%), Positives = 183/391 (46%)
Query: 95 SRDLSKFKDKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASIL 154
+R K+ F V+SYNIL + + LY P L W R I +E+ Y+A I+
Sbjct: 189 NRGKQKWPFDFSVMSYNILSQDLLCDNTYLYRHCNPPVLDWRNRFPNIIKELEQYSADIM 248
Query: 155 CLQEV--DHF-DDLDDLLQMDGFRGVYKARTGDANDGCAIFWKEKLFTLLHQENIEFQNF 211
CLQEV DH+ + L+ G+ +K RTG DGCA+ +K + F+L+ +E+
Sbjct: 249 CLQEVQEDHYKQQIKPSLESLGYHCEFKRRTGLKPDGCAVIFKRERFSLVSCHPVEYFRR 308
Query: 212 GL----RHNVAQLCVLKMNXXXXXXXXXXXXXXXXXXXXXXXGNIHVLFNPNRGDIKLGQ 267
G+ R NV + +L+ N H+L+NP RGDIKL Q
Sbjct: 309 GVPLMDRDNVGLIVLLRP------------IDPHVSLSNICVANTHLLYNPRRGDIKLAQ 356
Query: 268 IRLFLEKAYKLSQ--EWGGIPVLLAGDLNSSPNSALYQFLASSELDVCQHDRRHISGQFA 325
+ + L + ++SQ + PVLL GD NS P S LY+F+ LD +SGQ
Sbjct: 357 LAMLLAEISRVSQLPDSSVCPVLLCGDFNSVPWSPLYRFIKDRRLDYDGMPIGKVSGQEE 416
Query: 326 KCRDIDFQKRNSTSDW---ISISRPLLY--QWTDVELR--LATGCEGVTE--LQHQLNLC 376
R Q+ + W + IS+ Y Q D ELR T E TE ++H L L
Sbjct: 417 TPRG---QRILTVPIWPRSLGISQQCQYENQTRDSELRDLEQTERESFTEASIEHCLRLT 473
Query: 377 SAYFGIPGSHRTRDNLGEPLATSYHSKFMGTVDYIWHTEEL-----------VPVRVLET 425
SAY SH +++ G+P T+ HS+ TVDYI+++ L P R L+
Sbjct: 474 SAY-----SHHLKES-GQPEITTCHSRTAITVDYIFYSAALGDVMAQAEYSAPPERGLQL 527
Query: 426 LP------VNILRRNGGLPSERWGSDHLALV 450
L L++ GLP++ SDHL L+
Sbjct: 528 LGRLALVGEKELQKVNGLPNQHNSSDHLPLL 558
>FB|FBgn0016762 [details] [associations]
symbol:angel "angel" species:7227 "Drosophila melanogaster"
[GO:0005575 "cellular_component" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] Pfam:PF03372 EMBL:AE013599 GO:GO:0007275
eggNOG:COG5239 GeneTree:ENSGT00550000074364 InterPro:IPR005135
SUPFAM:SSF56219 EMBL:X85743 EMBL:AY058301 PIR:S71925
RefSeq:NP_477204.1 UniGene:Dm.4319 ProteinModelPortal:Q24239
DIP:DIP-17505N IntAct:Q24239 MINT:MINT-777493 STRING:Q24239
EnsemblMetazoa:FBtr0072083 GeneID:37748 KEGG:dme:Dmel_CG12273
UCSC:CG12273-RA CTD:37748 FlyBase:FBgn0016762 InParanoid:Q24239
OMA:DVRCAQV OrthoDB:EOG4FQZ73 PhylomeDB:Q24239 GenomeRNAi:37748
NextBio:805224 Bgee:Q24239 GermOnline:CG12273 Uniprot:Q24239
Length = 354
Score = 258 (95.9 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 75/237 (31%), Positives = 106/237 (44%)
Query: 86 DDHRQWTF-----SSRDLSKFKDKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKK 140
D +R+WT RD K F VVSYNIL + L+H LY +P +FL W+RR++
Sbjct: 45 DRNRRWTSLGNQAEGRDPHKCSS-FKVVSYNILAQDLLLEHLFLYVGIPHEFLSWQRRQQ 103
Query: 141 LIREEMSSYNASILCLQEV--DHFDDLDDLLQMDGFRG---VYKARTGDANDGCAIFWKE 195
+ E+ + ILCLQE+ DH L L+M + VYK +TG DGCAI +
Sbjct: 104 NLLRELLKLDPDILCLQEMQFDHLPVLVQRLRMGNGKKLAYVYKKKTGCRTDGCAIVYDS 163
Query: 196 KLFTLLHQENIEFQNFGLRHNVAQLCVLKMNXXXXXXXXXXXXXXXXXXXXXXXGNIHVL 255
F LL + +E + Q L H+L
Sbjct: 164 SKFELLDHQAVELYD--------QAVALLNRDNVALFARFRFKKQQEQQKEFVVATTHLL 215
Query: 256 FNPNRGDIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSPNSALYQFLASSELDV 312
FN R D++ Q+ LE+ S + P++L GD NS P+S+ +FL DV
Sbjct: 216 FNTKRSDVRCAQVERILEELQSFSTD---TPIVLTGDFNSLPDSSPIEFLVGKNGDV 269
Score = 71 (30.1 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 393 GEPLATSYHSKFMGTVDYIWHT------EELVPVRVLETLPVNILRRNGGLPSERWGSDH 446
GE A++Y ++++ VDYI + +L+P+ V +N G +P+ R GSDH
Sbjct: 286 GEGTASTYQNEWV-IVDYILRSLGSRSRHKLLPLSVYSLPSINRCIGAGQIPNYRLGSDH 344
Query: 447 LAL 449
AL
Sbjct: 345 YAL 347
>MGI|MGI:1915987 [details] [associations]
symbol:Angel1 "angel homolog 1 (Drosophila)" species:10090
"Mus musculus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] Pfam:PF03372 MGI:MGI:1915987
EMBL:AC102689 EMBL:BC019148 EMBL:AK220354 IPI:IPI00122555
RefSeq:NP_653107.2 UniGene:Mm.63979 ProteinModelPortal:Q8VCU0
PhosphoSite:Q8VCU0 PaxDb:Q8VCU0 PRIDE:Q8VCU0 DNASU:68737
Ensembl:ENSMUST00000021682 GeneID:68737 KEGG:mmu:68737
UCSC:uc011ypj.1 CTD:23357 eggNOG:COG5239
GeneTree:ENSGT00550000074364 HOGENOM:HOG000033940
HOVERGEN:HBG057379 InParanoid:Q8VCU0 OMA:LYNFIRD OrthoDB:EOG4229KD
ChiTaRS:ANGEL1 NextBio:327814 Bgee:Q8VCU0 Genevestigator:Q8VCU0
InterPro:IPR005135 SUPFAM:SSF56219 Uniprot:Q8VCU0
Length = 667
Score = 294 (108.6 bits), Expect = 6.6e-26, Sum P(2) = 6.6e-26
Identities = 79/229 (34%), Positives = 113/229 (49%)
Query: 104 KFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEV--DH 161
+F ++SYNIL + + +LY P L W R + +E ++ ILCLQEV DH
Sbjct: 241 QFTLMSYNILAQDLMQQSSELYLHCHPDILNWNYRFANLMQEFQHWDPDILCLQEVQEDH 300
Query: 162 F-DDLDDLLQMDGFRGVYKARTGDANDGCAIFWKEKLFTLLHQENIEFQNFGL----RHN 216
+ + L+ L+M GF YK RTG DGCA+ +K F LL +E+ GL R N
Sbjct: 301 YWEQLEPSLRMMGFTCFYKRRTGCKTDGCAVCYKPTRFRLLCASPVEYFRPGLELLNRDN 360
Query: 217 VAQLCVLKMNXXXXXXXXXXXXXXXXXXXXXXXGNIHVLFNPNRGDIKLGQIRLFLEKAY 276
V + +L+ N HVL+NP RGD+KL Q+ + L +
Sbjct: 361 VGLVLLLQP--------LVPEGLGQVSVAPLCVANTHVLYNPRRGDVKLAQMAILLAEVD 412
Query: 277 KLSQEWGG--IPVLLAGDLNSSPNSALYQFLASSELDVCQHDRRHISGQ 323
K+++ G P++L GDLNS P+S LY F+ EL +SGQ
Sbjct: 413 KVARLSDGSHCPIILCGDLNSVPDSPLYNFIRDGELQYNGMPAWKVSGQ 461
Score = 49 (22.3 bits), Expect = 6.6e-26, Sum P(2) = 6.6e-26
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 423 LETLPVNILRRNGGLPSERWGSDHLALV 450
L L IL GLP+ + SDHL L+
Sbjct: 630 LSLLSEEILWAANGLPNPFYSSDHLCLL 657
>TAIR|locus:2076446 [details] [associations]
symbol:AT3G58580 "AT3G58580" species:3702 "Arabidopsis
thaliana" [GO:0016787 "hydrolase activity" evidence=ISS]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] Pfam:PF03372 GO:GO:0005634 GO:GO:0005737
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355 GO:GO:0046872
GO:GO:0006351 GO:GO:0003723 GO:GO:0090305 eggNOG:COG5239
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0004535 EMBL:AL137082
HOGENOM:HOG000239764 KO:K12603 ProtClustDB:PLN03144 EMBL:AK226830
IPI:IPI00519312 PIR:T45678 RefSeq:NP_191417.2 UniGene:At.34714
ProteinModelPortal:Q9M2F8 SMR:Q9M2F8 PaxDb:Q9M2F8 PRIDE:Q9M2F8
EnsemblPlants:AT3G58580.1 GeneID:825027 KEGG:ath:AT3G58580
TAIR:At3g58580 InParanoid:Q9M2F8 OMA:ENNANED PhylomeDB:Q9M2F8
Genevestigator:Q9M2F8 Uniprot:Q9M2F8
Length = 603
Score = 169 (64.5 bits), Expect = 9.2e-26, Sum P(3) = 9.2e-26
Identities = 44/115 (38%), Positives = 65/115 (56%)
Query: 105 FVVVSYNILGVENALKHPDLYDKVPPKFLKWE-RRKKLIREEMSSYNASILCLQEV--DH 161
F V+SYNIL +A DLY PP L W RR+ L+RE + Y A ++CLQEV DH
Sbjct: 251 FTVLSYNILSDTSASS--DLYSYCPPWALSWPYRRQNLLRE-IVGYRADVVCLQEVQSDH 307
Query: 162 FDDL-DDLLQMDGFRGVYKARTGD-------ANDGCAIFWKEKLFTLLHQENIEF 208
F ++ L G++ +YK +T + A DGCA F++ F+ + + ++EF
Sbjct: 308 FHEIFAPELDKHGYQALYKRKTNEVLSGSTSAIDGCATFFRRDRFSHVKKYDVEF 362
Score = 152 (58.6 bits), Expect = 9.2e-26, Sum P(3) = 9.2e-26
Identities = 44/98 (44%), Positives = 58/98 (59%)
Query: 367 TELQHQLNLCSAY--F---GIPG----SHRTR-D-NLGEPLATSYHSKFMGTVDYIWHTE 415
T+L HQL L SAY F GI G HR R D N EPL T+ F+GT DYI++T
Sbjct: 496 TKLTHQLPLVSAYSSFVRKGIMGLGLEQHRRRIDLNTNEPLFTNCTRDFIGTHDYIFYTA 555
Query: 416 ELVPVR-VLETLPVNILRRNGGLPSERWGSDHLALVCE 452
+ + V +LE L + LR++ LPS W S+H+AL+ E
Sbjct: 556 DTLMVESLLELLDEDGLRKDTALPSPEWSSNHIALLAE 593
Score = 88 (36.0 bits), Expect = 9.2e-26, Sum P(3) = 9.2e-26
Identities = 21/66 (31%), Positives = 33/66 (50%)
Query: 251 NIHVLFNPNRGDIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSPNSALYQFLASSEL 310
N HV + D+KL Q+ L+ K++ IP+L+ GD N+ P SA + L ++
Sbjct: 419 NTHVNVQQDLKDVKLWQVHTLLKGLEKIAAS-ADIPMLVCGDFNTLPGSAPHTLLVMGKV 477
Query: 311 DVCQHD 316
D D
Sbjct: 478 DPMHPD 483
>TAIR|locus:2076426 [details] [associations]
symbol:AT3G58560 "AT3G58560" species:3702 "Arabidopsis
thaliana" [GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] Pfam:PF03372 GO:GO:0005829
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355
GO:GO:0046872 GO:GO:0006351 GO:GO:0003723 GO:GO:0090305
eggNOG:COG5239 InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0004535
EMBL:AL137082 EMBL:AF462845 EMBL:AY133538 IPI:IPI00546024
PIR:T45676 RefSeq:NP_191415.2 UniGene:At.23801 UniGene:At.67574
ProteinModelPortal:Q8W0Z9 SMR:Q8W0Z9 IntAct:Q8W0Z9 PaxDb:Q8W0Z9
PRIDE:Q8W0Z9 EnsemblPlants:AT3G58560.1 GeneID:825025
KEGG:ath:AT3G58560 TAIR:At3g58560 HOGENOM:HOG000239764
InParanoid:Q8W0Z9 KO:K12603 OMA:YATSDTY PhylomeDB:Q8W0Z9
ProtClustDB:PLN03144 Genevestigator:Q8W0Z9 Uniprot:Q8W0Z9
Length = 602
Score = 163 (62.4 bits), Expect = 1.0e-23, Sum P(3) = 1.0e-23
Identities = 44/116 (37%), Positives = 67/116 (57%)
Query: 105 FVVVSYNILGVENALKHPDLYDKVPPKFLKWE-RRKKLIREEMSSYNASILCLQEV--DH 161
F V+SYNIL + D+Y P L W RR+ L+RE + Y A I+CLQEV DH
Sbjct: 248 FTVLSYNILS--DTYASSDIYSYCPTWALAWTYRRQNLLRE-IVKYRADIVCLQEVQNDH 304
Query: 162 FDDLDDLLQMD--GFRGVYKART-----GDAN--DGCAIFWKEKLFTLLHQENIEF 208
F++ L ++D G++G++K +T G+ N DGCA F++ F+ + + +EF
Sbjct: 305 FEEFF-LPELDKHGYQGLFKRKTNEVFIGNTNTIDGCATFFRRDRFSHVKKYEVEF 359
Score = 142 (55.0 bits), Expect = 1.0e-23, Sum P(3) = 1.0e-23
Identities = 39/97 (40%), Positives = 55/97 (56%)
Query: 367 TELQHQLNLCSAY--FGIPGSH----RTRDNL----GEPLATSYHSKFMGTVDYIWHTEE 416
++L HQL L SAY F G + + R L EPL T+ F+GT+DYI++T +
Sbjct: 493 SKLTHQLPLVSAYSQFAKMGGNVITEQQRRRLDPASSEPLFTNCTRDFIGTLDYIFYTAD 552
Query: 417 LVPVR-VLETLPVNILRRNGGLPSERWGSDHLALVCE 452
+ V +LE L LR++ LPS W SDH+AL+ E
Sbjct: 553 TLTVESLLELLDEESLRKDTALPSPEWSSDHIALLAE 589
Score = 85 (35.0 bits), Expect = 1.0e-23, Sum P(3) = 1.0e-23
Identities = 22/66 (33%), Positives = 33/66 (50%)
Query: 251 NIHVLFNPNRGDIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSPNSALYQFLASSEL 310
N HV D+KL Q+ L+ K++ IP+L+ GD N+ P SA + LA ++
Sbjct: 416 NTHVNVPHELKDVKLWQVHTLLKGLEKIAAS-ADIPMLVCGDFNTVPASAPHTLLAVGKV 474
Query: 311 DVCQHD 316
D D
Sbjct: 475 DPLHPD 480
>MGI|MGI:1196310 [details] [associations]
symbol:Angel2 "angel homolog 2 (Drosophila)" species:10090
"Mus musculus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] Pfam:PF03372 MGI:MGI:1196310
eggNOG:COG5239 GeneTree:ENSGT00550000074364 HOGENOM:HOG000033940
HOVERGEN:HBG057379 InterPro:IPR005135 SUPFAM:SSF56219 CTD:90806
OrthoDB:EOG4255SF EMBL:AB041602 EMBL:AK088834 EMBL:AK135709
EMBL:AK158731 EMBL:AK166619 EMBL:AK169653 EMBL:BC024907
IPI:IPI00230182 IPI:IPI00757120 IPI:IPI00867916 IPI:IPI00867920
IPI:IPI00867925 RefSeq:NP_001185949.1 RefSeq:NP_067396.3
UniGene:Mm.289914 ProteinModelPortal:Q8K1C0 PhosphoSite:Q8K1C0
PaxDb:Q8K1C0 PRIDE:Q8K1C0 Ensembl:ENSMUST00000027947
Ensembl:ENSMUST00000066632 Ensembl:ENSMUST00000110899
Ensembl:ENSMUST00000123384 GeneID:52477 KEGG:mmu:52477
UCSC:uc007ebj.2 UCSC:uc007ebm.2 UCSC:uc007ebn.2 InParanoid:Q8K1C0
OMA:WEYICNH NextBio:309017 Bgee:Q8K1C0 CleanEx:MM_ANGEL2
Genevestigator:Q8K1C0 Uniprot:Q8K1C0
Length = 544
Score = 279 (103.3 bits), Expect = 1.9e-23, Sum P(2) = 1.9e-23
Identities = 104/342 (30%), Positives = 155/342 (45%)
Query: 102 KDKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEV-- 159
K F V+SYNIL + + LY L W R I +E+ ++A +LCLQEV
Sbjct: 164 KFDFSVMSYNILSQDLLEDNSHLYRHCRRPVLHWSFRFPNILKEIKHFDADVLCLQEVQE 223
Query: 160 DHFD-DLDDLLQMDGFRGVYKARTGDANDGCAIFWKEKLFTLLHQENIEF--QNFGL--R 214
DH+ ++ L+ G+ YK +TG DGCAI +K F+LL +EF ++ L R
Sbjct: 224 DHYGTEIRPSLESLGYHCEYKMKTGRKPDGCAICFKHSRFSLLSVNPVEFCRRDIPLLDR 283
Query: 215 HNVAQLCVLKMNXXXXXXXXXXXXXXXXXXXXXXXGNIHVLFNPNRGDIKLGQIRLFLEK 274
N+ + +L+ N H+L+NP RGDIKL Q+ + L +
Sbjct: 284 DNIGLVLLLQPKIPRAASPSICIA------------NTHLLYNPRRGDIKLTQLAMLLAE 331
Query: 275 AYKLSQEWGG--IPVLLAGDLNSSPNSALYQFLASSELDVCQHDRRHISGQFAKCRDIDF 332
++ G P+++ GD NS P S LY F+ +L+ +SGQ R
Sbjct: 332 IANVTHRKDGSSCPIVMCGDFNSVPGSPLYSFIKEGKLNYEGLAIGKVSGQEQSSRG--- 388
Query: 333 QKRNSTSDW---ISISRPLLYQW--------TDVELRLA--------TGCEGVTE-LQHQ 372
Q+ S W + IS+ +Y+ TD ++ A + V+ LQH
Sbjct: 389 QRILSIPIWPPNLGISQNCVYEAQQVPKVEKTDSDVTQAQQEKAEVPVSADKVSSHLQHG 448
Query: 373 LNLCSAYFGIPGSHRTRDNLGEPLATSYHSKFMGTVDYIWHT 414
+L S Y SH D G P T+ HS+ TVDYI++T
Sbjct: 449 FSLSSVY-----SHYVPDT-GVPEVTTCHSRSAITVDYIFYT 484
Score = 46 (21.3 bits), Expect = 1.9e-23, Sum P(2) = 1.9e-23
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 436 GLPSERWGSDHLALVCE 452
GLP+E SDHL L+ +
Sbjct: 523 GLPNEHNSSDHLPLLAK 539
>MGI|MGI:2443226 [details] [associations]
symbol:Pde12 "phosphodiesterase 12" species:10090 "Mus
musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0008150 "biological_process"
evidence=ND] [GO:0016787 "hydrolase activity" evidence=IEA]
Pfam:PF03372 MGI:MGI:2443226 GO:GO:0005739 GO:GO:0016787
eggNOG:COG5239 GeneTree:ENSGT00550000074364 InterPro:IPR005135
SUPFAM:SSF56219 UniGene:Mm.297768 CTD:201626 HOGENOM:HOG000006935
HOVERGEN:HBG061027 OMA:FRWYKEA OrthoDB:EOG4JDH6H EMBL:AK051991
EMBL:AK082947 EMBL:AK088843 EMBL:AK155088 EMBL:AK161083
EMBL:AK167708 EMBL:BC064450 IPI:IPI00420284 RefSeq:NP_848783.3
UniGene:Mm.290758 ProteinModelPortal:Q3TIU4 SMR:Q3TIU4
STRING:Q3TIU4 PhosphoSite:Q3TIU4 PaxDb:Q3TIU4 PRIDE:Q3TIU4
Ensembl:ENSMUST00000052932 GeneID:211948 KEGG:mmu:211948
UCSC:uc007stb.1 InParanoid:Q3TIU4 ChiTaRS:PDE12 NextBio:373405
Bgee:Q3TIU4 Genevestigator:Q3TIU4 Uniprot:Q3TIU4
Length = 608
Score = 232 (86.7 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
Identities = 74/257 (28%), Positives = 119/257 (46%)
Query: 92 TFSSRDLSKFK---DKFV-VVSYNILG---VENALKHPDLYDKVPPKFLKWERRKKLIRE 144
TF R L K D F+ VSYNIL + LY P L+ + R+ LI++
Sbjct: 277 TFDHRHLYTKKVTEDSFIRTVSYNILADTYAQTEFSRTVLYPYCAPYALELDYRQNLIQK 336
Query: 145 EMSSYNASILCLQEVDH--FDD-LDDLLQMDGFRGVYKARTGDANDGCAIFWKEKLFTLL 201
E++ YNA ++CLQEVD F D L L+ G GV++ + ++G A F+++ F LL
Sbjct: 337 ELTGYNADLICLQEVDRAVFSDSLVPALEAFGLEGVFRIKQ---HEGLATFYRKSKFRLL 393
Query: 202 HQENIEFQNF----GLRHNVAQLCVL------KMNXXXXXXXXXXXXXXXXXXXXXXXGN 251
Q +I FQ L + + L K+ N
Sbjct: 394 SQHDISFQEALKSDPLHKELLEKLALNPLAQEKVLQRSSVLQISVLQSTTDSSKKICVAN 453
Query: 252 IHVLFNPNRGDIKLGQIRLFLEKAYKLSQE-WGGIPVLLAGDLNSSPNSALYQFLASSEL 310
H+ ++P G I+L Q+ + L +S++ + GIPV+ GD NS+P++ +Y F+ S +
Sbjct: 454 THLYWHPKGGYIRLIQMEVALVHIRHVSRDLYPGIPVIFCGDFNSTPSTGMYHFVISGSI 513
Query: 311 DVCQHDRRHISGQFAKC 327
H+ +G+ +C
Sbjct: 514 AE-DHEDWASNGEEERC 529
Score = 98 (39.6 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
Identities = 27/75 (36%), Positives = 40/75 (53%)
Query: 382 IPGSH--RTRDNLGEPLATSYHSKFMGTVDYIWHTEELVPVRVLETLPVNI-LRRNGGLP 438
+P SH + + GEP T+Y F G +DYI+ + V + LP + + + LP
Sbjct: 531 MPLSHCFKLKSACGEPAYTNYVGGFHGCLDYIFIDLNTLEVEQVIPLPSHEEVTTHQALP 590
Query: 439 SERWGSDHLALVCEL 453
S SDH+ALVC+L
Sbjct: 591 SVSHPSDHIALVCDL 605
>UNIPROTKB|F1SGK9 [details] [associations]
symbol:PDE12 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005739 "mitochondrion" evidence=IEA] Pfam:PF03372
GO:GO:0005739 GeneTree:ENSGT00550000074364 InterPro:IPR005135
SUPFAM:SSF56219 OMA:FRWYKEA EMBL:CU467952 RefSeq:XP_001926497.2
UniGene:Ssc.33948 Ensembl:ENSSSCT00000012546 GeneID:100157651
KEGG:ssc:100157651 Uniprot:F1SGK9
Length = 609
Score = 223 (83.6 bits), Expect = 7.2e-21, Sum P(2) = 7.2e-21
Identities = 72/257 (28%), Positives = 121/257 (47%)
Query: 92 TFSSRDL--SKFKDKFVV--VSYNILG---VENALKHPDLYDKVPPKFLKWERRKKLIRE 144
TF R L K D ++ VSYN+L + LY P L+ + R+ LI++
Sbjct: 278 TFDHRHLYTKKVTDDALIRTVSYNLLADTYAQTEFSRTVLYPYCAPYALELDYRQNLIQK 337
Query: 145 EMSSYNASILCLQEVDH--F-DDLDDLLQMDGFRGVYKARTGDANDGCAIFWKEKLFTLL 201
E++ YNA ++CLQEVD F D L L+ G GV++ + ++G A F+++ F+LL
Sbjct: 338 ELTGYNADLICLQEVDRDVFTDSLVPALEAFGLEGVFRIKQ---HEGLATFYRKSKFSLL 394
Query: 202 HQENIEF----QNFGLRHNVAQLCVL------KMNXXXXXXXXXXXXXXXXXXXXXXXGN 251
Q +I F Q+ L + + VL K+ N
Sbjct: 395 SQHDIAFHEALQSDPLHKELLEKLVLYPAAQEKVLQRSSVLQVSVLQSTKDSSKKICVAN 454
Query: 252 IHVLFNPNRGDIKLGQIRLFLEKAYKLSQE-WGGIPVLLAGDLNSSPNSALYQFLASSEL 310
H+ ++P G I+L Q+ + L +S + + GIPV+ GD NS+P++ +Y F+ + +
Sbjct: 455 THLYWHPKGGYIRLIQMAVALAHIRHVSCDLYPGIPVVFCGDFNSTPSTGMYHFVINGSI 514
Query: 311 DVCQHDRRHISGQFAKC 327
H+ +G+ +C
Sbjct: 515 PE-DHEDWASNGEEERC 530
Score = 93 (37.8 bits), Expect = 7.2e-21, Sum P(2) = 7.2e-21
Identities = 24/62 (38%), Positives = 34/62 (54%)
Query: 393 GEPLATSYHSKFMGTVDYIWHTEELVPVRVLETLPVNI-LRRNGGLPSERWGSDHLALVC 451
GEP T+Y F G +DYI+ + V + LP + + + LPS SDH+ALVC
Sbjct: 545 GEPAYTNYVGGFHGCLDYIFIDLNTLEVEQVIPLPSHEEVTTHQALPSVSHPSDHIALVC 604
Query: 452 EL 453
+L
Sbjct: 605 DL 606
>RGD|1310975 [details] [associations]
symbol:Pde12 "phosphodiesterase 12" species:10116 "Rattus
norvegicus" [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] Pfam:PF03372
RGD:1310975 GO:GO:0016787 eggNOG:COG5239
GeneTree:ENSGT00550000074364 InterPro:IPR005135 SUPFAM:SSF56219
HOGENOM:HOG000006935 HOVERGEN:HBG061027 EMBL:BC079396
IPI:IPI00464947 UniGene:Rn.225980 ProteinModelPortal:Q6AXQ5
PhosphoSite:Q6AXQ5 Ensembl:ENSRNOT00000017800 UCSC:RGD:1310975
OMA:LICLANT ArrayExpress:Q6AXQ5 Genevestigator:Q6AXQ5
Uniprot:Q6AXQ5
Length = 608
Score = 222 (83.2 bits), Expect = 9.5e-21, Sum P(2) = 9.5e-21
Identities = 73/257 (28%), Positives = 117/257 (45%)
Query: 92 TFSSRDLSKFK---DKFV-VVSYNILG---VENALKHPDLYDKVPPKFLKWERRKKLIRE 144
TF R L K D F+ VSYNIL + LY P L+ + R+ LI++
Sbjct: 277 TFDHRHLYTKKVTEDSFIRTVSYNILADTYAQTEFSRTVLYPYCAPYALELDYRQNLIQK 336
Query: 145 EMSSYNASILCLQEVDH--FDD-LDDLLQMDGFRGVYKARTGDANDGCAIFWKEKLFTLL 201
E++ YNA ++CLQEVD F D L L+ G GV++ + ++G A F+++ F LL
Sbjct: 337 ELTGYNADLICLQEVDRAVFSDSLVPALEAFGLEGVFRIKQ---HEGLATFYRKSKFRLL 393
Query: 202 HQENIEFQNF----GLRHNVAQLCVL------KMNXXXXXXXXXXXXXXXXXXXXXXXGN 251
Q +I FQ L + + L K+ N
Sbjct: 394 SQHDISFQEALKSDPLHKELLEKLALNPLAQEKVLQRSSVLQISVLQSTTDSSKKICVAN 453
Query: 252 IHVLFNPNRGDIKLGQIRLFLEKAYKLSQE-WGGIPVLLAGDLNSSPNSALYQFLASSEL 310
H+ ++P G I+L Q+ L +S + + GIPV+ GD NS+P++ +Y F+ + +
Sbjct: 454 THLYWHPKGGYIRLIQMAAALVHIRHVSCDLYPGIPVIFCGDFNSTPSTGMYHFVINGSV 513
Query: 311 DVCQHDRRHISGQFAKC 327
H+ +G+ +C
Sbjct: 514 PE-DHEDWASNGEEERC 529
Score = 93 (37.8 bits), Expect = 9.5e-21, Sum P(2) = 9.5e-21
Identities = 24/62 (38%), Positives = 34/62 (54%)
Query: 393 GEPLATSYHSKFMGTVDYIWHTEELVPVRVLETLPVNI-LRRNGGLPSERWGSDHLALVC 451
GEP T+Y F G +DYI+ + V + LP + + + LPS SDH+ALVC
Sbjct: 544 GEPAYTNYVGGFHGCLDYIFIDLNALEVEQVIPLPSHEEVTTHQALPSVSHPSDHIALVC 603
Query: 452 EL 453
+L
Sbjct: 604 DL 605
>UNIPROTKB|Q6L8Q7 [details] [associations]
symbol:PDE12 "2',5'-phosphodiesterase 12" species:9606
"Homo sapiens" [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] Pfam:PF03372
GO:GO:0005739 EMBL:CH471055 GO:GO:0016787 eggNOG:COG5239
InterPro:IPR005135 SUPFAM:SSF56219 CTD:201626 HOGENOM:HOG000006935
HOVERGEN:HBG061027 OMA:FRWYKEA OrthoDB:EOG4JDH6H EMBL:AB115695
EMBL:AK074423 EMBL:AK300374 EMBL:AL831824 IPI:IPI00174390
IPI:IPI00886797 RefSeq:NP_808881.3 UniGene:Hs.572993
ProteinModelPortal:Q6L8Q7 SMR:Q6L8Q7 IntAct:Q6L8Q7 STRING:Q6L8Q7
PhosphoSite:Q6L8Q7 DMDM:172046137 PaxDb:Q6L8Q7 PRIDE:Q6L8Q7
DNASU:201626 Ensembl:ENST00000311180 GeneID:201626 KEGG:hsa:201626
UCSC:uc003diw.4 GeneCards:GC03P057541 H-InvDB:HIX0003393
HGNC:HGNC:25386 HPA:HPA043171 neXtProt:NX_Q6L8Q7
PharmGKB:PA162399016 InParanoid:Q6L8Q7 PhylomeDB:Q6L8Q7
GenomeRNAi:201626 NextBio:90179 ArrayExpress:Q6L8Q7 Bgee:Q6L8Q7
CleanEx:HS_PDE12 Genevestigator:Q6L8Q7 Uniprot:Q6L8Q7
Length = 609
Score = 222 (83.2 bits), Expect = 9.6e-21, Sum P(2) = 9.6e-21
Identities = 72/257 (28%), Positives = 120/257 (46%)
Query: 92 TFSSRDLSKFK---DKFV-VVSYNILG---VENALKHPDLYDKVPPKFLKWERRKKLIRE 144
TF R L K D + VSYNIL + LY P L+ + R+ LI++
Sbjct: 278 TFDHRHLYTKKVTEDALIRTVSYNILADTYAQTEFSRTVLYPYCAPYALELDYRQNLIQK 337
Query: 145 EMSSYNASILCLQEVDH--FDD-LDDLLQMDGFRGVYKARTGDANDGCAIFWKEKLFTLL 201
E++ YNA ++CLQEVD F D L L+ G GV++ + ++G A F+++ F+LL
Sbjct: 338 ELTGYNADVICLQEVDRAVFSDSLVPALEAFGLEGVFRIKQ---HEGLATFYRKSKFSLL 394
Query: 202 HQENIEF----QNFGLRHNVAQLCVL------KMNXXXXXXXXXXXXXXXXXXXXXXXGN 251
Q +I F ++ L + + VL K+ N
Sbjct: 395 SQHDISFYEALESDPLHKELLEKLVLYPSAQEKVLQRSSVLQVSVLQSTKDSSKRICVAN 454
Query: 252 IHVLFNPNRGDIKLGQIRLFLEKAYKLSQE-WGGIPVLLAGDLNSSPNSALYQFLASSEL 310
H+ ++P G I+L Q+ + L +S + + GIPV+ GD NS+P++ +Y F+ + +
Sbjct: 455 THLYWHPKGGYIRLIQMAVALAHIRHVSCDLYPGIPVIFCGDFNSTPSTGMYHFVINGSI 514
Query: 311 DVCQHDRRHISGQFAKC 327
H+ +G+ +C
Sbjct: 515 PE-DHEDWASNGEEERC 530
Score = 93 (37.8 bits), Expect = 9.6e-21, Sum P(2) = 9.6e-21
Identities = 24/62 (38%), Positives = 34/62 (54%)
Query: 393 GEPLATSYHSKFMGTVDYIWHTEELVPVRVLETLPVNI-LRRNGGLPSERWGSDHLALVC 451
GEP T+Y F G +DYI+ + V + LP + + + LPS SDH+ALVC
Sbjct: 545 GEPAYTNYVGGFHGCLDYIFIDLNALEVEQVIPLPSHEEVTTHQALPSVSHPSDHIALVC 604
Query: 452 EL 453
+L
Sbjct: 605 DL 606
>UNIPROTKB|Q08DF7 [details] [associations]
symbol:PDE12 "2',5'-phosphodiesterase 12" species:9913 "Bos
taurus" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] Pfam:PF03372 GO:GO:0005739
GO:GO:0016787 eggNOG:COG5239 GeneTree:ENSGT00550000074364
InterPro:IPR005135 SUPFAM:SSF56219 EMBL:BC123772 IPI:IPI00717658
RefSeq:NP_001069601.1 UniGene:Bt.42120 ProteinModelPortal:Q08DF7
Ensembl:ENSBTAT00000020675 GeneID:538860 KEGG:bta:538860 CTD:201626
HOGENOM:HOG000006935 HOVERGEN:HBG061027 InParanoid:Q08DF7
OMA:FRWYKEA OrthoDB:EOG4JDH6H NextBio:20877627 Uniprot:Q08DF7
Length = 609
Score = 218 (81.8 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
Identities = 71/257 (27%), Positives = 120/257 (46%)
Query: 92 TFSSRDL--SKFKDKFVV--VSYNILG---VENALKHPDLYDKVPPKFLKWERRKKLIRE 144
TF R L K D ++ VSYNIL + LY P L+ + R+ LI++
Sbjct: 278 TFDHRHLYTKKVTDDALIRTVSYNILADTYAQTEFSRTVLYPYCAPYALELDYRQNLIQK 337
Query: 145 EMSSYNASILCLQEVDH--F-DDLDDLLQMDGFRGVYKARTGDANDGCAIFWKEKLFTLL 201
E++ YNA ++CLQEVD F D L L+ G GV++ + ++G A F+++ F+LL
Sbjct: 338 ELTGYNADLICLQEVDRCVFTDSLMPALEAFGLEGVFRIKQ---HEGLATFYRKSKFSLL 394
Query: 202 HQENIEF----QNFGLRHNVAQLCVL------KMNXXXXXXXXXXXXXXXXXXXXXXXGN 251
Q +I F Q+ L + + L ++ N
Sbjct: 395 SQHDIAFHEALQSDPLHKELLEKLALYPSAQERVLQRSSVVQVSVLQSTKDSSKKICVAN 454
Query: 252 IHVLFNPNRGDIKLGQIRLFLEKAYKLSQE-WGGIPVLLAGDLNSSPNSALYQFLASSEL 310
H+ ++P G I+L Q+ + L +S + + GIPV+ GD NS+P++ +Y F+ + +
Sbjct: 455 THLYWHPKGGYIRLIQMAVALAHIRHVSCDLYPGIPVIFCGDFNSTPSTGMYHFVINGSI 514
Query: 311 DVCQHDRRHISGQFAKC 327
H+ +G+ +C
Sbjct: 515 AE-DHEDWTSNGEEERC 530
Score = 94 (38.1 bits), Expect = 2.2e-20, Sum P(2) = 2.2e-20
Identities = 26/72 (36%), Positives = 38/72 (52%)
Query: 385 SH--RTRDNLGEPLATSYHSKFMGTVDYIWHTEELVPVRVLETLPVNI-LRRNGGLPSER 441
SH + + GEP T+Y F G +DYI+ + V + LP + + + LPS
Sbjct: 535 SHFFKLKSACGEPAYTNYVGGFHGCLDYIFIDLHALEVEQVIPLPSHEEVTTHQALPSVS 594
Query: 442 WGSDHLALVCEL 453
SDH+ALVC+L
Sbjct: 595 HPSDHIALVCDL 606
>UNIPROTKB|Q9UK39 [details] [associations]
symbol:CCRN4L "Nocturnin" species:9606 "Homo sapiens"
[GO:0048511 "rhythmic process" evidence=IEA] [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=TAS] [GO:0005634 "nucleus"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] Pfam:PF03372 GO:GO:0005654 GO:GO:0003700
GO:GO:0048511 GO:GO:0006366 EMBL:CH471056 eggNOG:COG5239
InterPro:IPR005135 SUPFAM:SSF56219 Reactome:REACT_24941
CleanEx:HS_CCR4 EMBL:AF183961 EMBL:BC113494 EMBL:BC113500
EMBL:AF199492 EMBL:AF199493 EMBL:AF199494 IPI:IPI00015890
RefSeq:NP_036250.2 UniGene:Hs.639842 UniGene:Hs.656047
ProteinModelPortal:Q9UK39 SMR:Q9UK39 IntAct:Q9UK39 STRING:Q9UK39
PhosphoSite:Q9UK39 DMDM:212276446 PaxDb:Q9UK39 PRIDE:Q9UK39
Ensembl:ENST00000280614 GeneID:25819 KEGG:hsa:25819 UCSC:uc003ihl.3
CTD:25819 GeneCards:GC04P139936 H-InvDB:HIX0004503 HGNC:HGNC:14254
MIM:608468 neXtProt:NX_Q9UK39 PharmGKB:PA26176 HOGENOM:HOG000237357
HOVERGEN:HBG006512 InParanoid:Q9UK39 OMA:HPEYLVS OrthoDB:EOG4NZTTH
PhylomeDB:Q9UK39 ChiTaRS:CCRN4L GenomeRNAi:25819 NextBio:47067
Bgee:Q9UK39 CleanEx:HS_CCRN4L Genevestigator:Q9UK39
GermOnline:ENSG00000151014 Uniprot:Q9UK39
Length = 431
Score = 168 (64.2 bits), Expect = 2.4e-20, Sum P(3) = 2.4e-20
Identities = 45/121 (37%), Positives = 64/121 (52%)
Query: 107 VVSYNILGVENAL-KHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDH-FDD 164
V+ +NIL AL + D + + P + LKWE RK LI EE+ +Y ILCLQEVDH FD
Sbjct: 145 VMQWNILA--QALGEGKDNFVQCPVEALKWEERKCLILEEILAYQPDILCLQEVDHYFDT 202
Query: 165 LDDLLQMDGFRGVYKART---------GDANDGCAIFWKEKLFTLLHQENIEFQNFGLRH 215
LL G++G + + + DGCA+F+ + F L++ NI L+
Sbjct: 203 FQPLLSRLGYQGTFFPKPWSPCLDVEHNNGPDGCALFFLQNRFKLVNSANIRLTAMTLKT 262
Query: 216 N 216
N
Sbjct: 263 N 263
Score = 115 (45.5 bits), Expect = 2.4e-20, Sum P(3) = 2.4e-20
Identities = 34/94 (36%), Positives = 50/94 (53%)
Query: 373 LNLCSAYFGIPGSHRTRDNLGEPLATSYHSKFMG----TVDYIWHTEELVPVR-VLETLP 427
LNL SAY + + D EP T++ + G T+DYIW+++ + VR L+ L
Sbjct: 342 LNLNSAYKLL-----SADGQSEPPYTTWKIRTSGECRHTLDYIWYSKHALNVRSALDLLT 396
Query: 428 VNILRRNGGLPSERWGSDHLALVCELAFANNGDG 461
+ N LPS + SDHL+LVC+ +F DG
Sbjct: 397 EEQIGPNR-LPSFNYPSDHLSLVCDFSFTEESDG 429
Score = 66 (28.3 bits), Expect = 2.4e-20, Sum P(3) = 2.4e-20
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 285 IPVLLAGDLNSSPNSALYQFLASSELDV 312
IP+++ GD N+ P +Y+ ASS L++
Sbjct: 317 IPLIVCGDFNAEPTEEVYKHFASSSLNL 344
Score = 37 (18.1 bits), Expect = 3.0e-06, Sum P(3) = 3.0e-06
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 90 QWTFSSRDLSKFKDKFV 106
QW ++ L + KD FV
Sbjct: 147 QWNILAQALGEGKDNFV 163
>UNIPROTKB|E2R412 [details] [associations]
symbol:PDE12 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005739 "mitochondrion" evidence=IEA]
Pfam:PF03372 GO:GO:0005739 GeneTree:ENSGT00550000074364
InterPro:IPR005135 SUPFAM:SSF56219 CTD:201626 OMA:FRWYKEA
EMBL:AAEX03012165 RefSeq:XP_541830.2 Ensembl:ENSCAFT00000012438
GeneID:484714 KEGG:cfa:484714 Uniprot:E2R412
Length = 616
Score = 217 (81.4 bits), Expect = 3.0e-20, Sum P(2) = 3.0e-20
Identities = 69/257 (26%), Positives = 121/257 (47%)
Query: 92 TFSSRDL--SKFKDKFVV--VSYNILG---VENALKHPDLYDKVPPKFLKWERRKKLIRE 144
TF R L K D ++ VSYN+L + LY P L+ + R+ LI++
Sbjct: 285 TFDHRHLYTKKVTDNSLIRTVSYNLLADTYAQTEFSRSVLYPYCAPYALELDYRQNLIQK 344
Query: 145 EMSSYNASILCLQEVDH--F-DDLDDLLQMDGFRGVYKARTGDANDGCAIFWKEKLFTLL 201
E++ YNA ++CLQEVD F D L L+ G GV++ + ++G A F+++ F+LL
Sbjct: 345 ELTGYNADLICLQEVDRNVFTDSLVPALEAFGLEGVFRIKQ---HEGLATFYRKTKFSLL 401
Query: 202 HQENIEF----QNFGLRHNVAQLCVL------KMNXXXXXXXXXXXXXXXXXXXXXXXGN 251
Q +I F ++ L + + V+ ++ N
Sbjct: 402 SQHDISFHEALESDPLHKELLEKLVVYPSAQERVLQRSSVLQVSVLQSTKDSSKRLCVAN 461
Query: 252 IHVLFNPNRGDIKLGQIRLFLEKAYKLSQE-WGGIPVLLAGDLNSSPNSALYQFLASSEL 310
H+ ++P G I+L Q+ + L +S + + GIPV+ GD NS+P++ +Y F+ + +
Sbjct: 462 THLYWHPKGGYIRLIQMAVALAHIRHVSCDLYPGIPVIFCGDFNSTPSTGMYHFVVNGSI 521
Query: 311 DVCQHDRRHISGQFAKC 327
H+ +G+ +C
Sbjct: 522 PE-DHEDWASNGEEERC 537
Score = 94 (38.1 bits), Expect = 3.0e-20, Sum P(2) = 3.0e-20
Identities = 26/72 (36%), Positives = 38/72 (52%)
Query: 385 SH--RTRDNLGEPLATSYHSKFMGTVDYIWHTEELVPVRVLETLPVNI-LRRNGGLPSER 441
SH + + GEP T+Y F G +DYI+ + V + LP + + + LPS
Sbjct: 542 SHFFKLKSACGEPAYTNYVGGFHGCLDYIFIDLNALEVEQVIPLPSHEEVTTHQALPSVS 601
Query: 442 WGSDHLALVCEL 453
SDH+ALVC+L
Sbjct: 602 HPSDHIALVCDL 613
>UNIPROTKB|F1PFN1 [details] [associations]
symbol:CCRN4L "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IEA] [GO:0000290 "deadenylation-dependent decapping
of nuclear-transcribed mRNA" evidence=IEA] Pfam:PF03372
GeneTree:ENSGT00550000074364 InterPro:IPR005135 SUPFAM:SSF56219
OMA:HPEYLVS EMBL:AAEX03011735 Ensembl:ENSCAFT00000005996
Uniprot:F1PFN1
Length = 365
Score = 168 (64.2 bits), Expect = 3.2e-20, Sum P(3) = 3.2e-20
Identities = 45/121 (37%), Positives = 64/121 (52%)
Query: 107 VVSYNILGVENAL-KHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDH-FDD 164
V+ +NIL AL + D + + P + LKWE RK LI EE+ +Y ILCLQEVDH FD
Sbjct: 79 VMQWNILA--QALGEGKDNFVQCPVEALKWEERKCLILEEILAYQPDILCLQEVDHYFDT 136
Query: 165 LDDLLQMDGFRGVYKART---------GDANDGCAIFWKEKLFTLLHQENIEFQNFGLRH 215
LL G++G + + + DGCA+F+ + F L++ NI L+
Sbjct: 137 FQPLLSRLGYQGTFFPKPWSPCLDVEHNNGPDGCALFFLQNRFKLVNSANIRLTAMTLKT 196
Query: 216 N 216
N
Sbjct: 197 N 197
Score = 109 (43.4 bits), Expect = 3.2e-20, Sum P(3) = 3.2e-20
Identities = 33/94 (35%), Positives = 50/94 (53%)
Query: 373 LNLCSAYFGIPGSHRTRDNLGEPLATSYHSKFMG----TVDYIWHTEELVPVR-VLETLP 427
LNL SAY + + D EP T++ + G T+DYIW+++ + V+ L+ L
Sbjct: 276 LNLNSAYKLL-----SADGQSEPPYTTWKIRTSGECRHTLDYIWYSKHALSVKSALDLLT 330
Query: 428 VNILRRNGGLPSERWGSDHLALVCELAFANNGDG 461
+ N LPS + SDHL+LVC+ +F DG
Sbjct: 331 EEQIGPNR-LPSFNYPSDHLSLVCDFSFNEEPDG 363
Score = 66 (28.3 bits), Expect = 3.2e-20, Sum P(3) = 3.2e-20
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 285 IPVLLAGDLNSSPNSALYQFLASSELDV 312
IP+++ GD N+ P +Y+ ASS L++
Sbjct: 251 IPLIVCGDFNAEPTEEVYKHFASSSLNL 278
Score = 37 (18.1 bits), Expect = 6.6e-06, Sum P(3) = 6.6e-06
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 90 QWTFSSRDLSKFKDKFV 106
QW ++ L + KD FV
Sbjct: 81 QWNILAQALGEGKDNFV 97
>UNIPROTKB|I3LN01 [details] [associations]
symbol:CCRN4L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] Pfam:PF03372
GeneTree:ENSGT00550000074364 InterPro:IPR005135 SUPFAM:SSF56219
CTD:25819 OMA:HPEYLVS EMBL:FP102607 RefSeq:XP_003129235.1
UniGene:Ssc.9136 Ensembl:ENSSSCT00000031350 GeneID:100513746
KEGG:ssc:100513746 Uniprot:I3LN01
Length = 427
Score = 166 (63.5 bits), Expect = 2.1e-19, Sum P(3) = 2.1e-19
Identities = 45/121 (37%), Positives = 64/121 (52%)
Query: 107 VVSYNILGVENAL-KHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDH-FDD 164
V+ +NIL AL + D + + P + LKWE RK LI EE+ +Y ILCLQEVDH FD
Sbjct: 145 VMQWNILA--QALGEGKDNFVQCPLEALKWEERKCLILEEILAYQPDILCLQEVDHYFDT 202
Query: 165 LDDLLQMDGFRGVYKART---------GDANDGCAIFWKEKLFTLLHQENIEFQNFGLRH 215
LL G++G + + + DGCA+F+ + F L++ NI L+
Sbjct: 203 FHPLLSRLGYQGTFFPKPWSPCLDVEHNNGPDGCALFFLQNRFKLVNSANIRLTAMTLKT 262
Query: 216 N 216
N
Sbjct: 263 N 263
Score = 107 (42.7 bits), Expect = 2.1e-19, Sum P(3) = 2.1e-19
Identities = 32/88 (36%), Positives = 48/88 (54%)
Query: 373 LNLCSAYFGIPGSHRTRDNLGEPLATSYHSKFMG----TVDYIWHTEELVPVR-VLETLP 427
LNL SAY + + D EP T++ + G T+DYIW++ + + VR L+ L
Sbjct: 342 LNLSSAYKLL-----SADGQSEPPYTTWKIRTSGECRHTLDYIWYSRQALSVRSALDLLT 396
Query: 428 VNILRRNGGLPSERWGSDHLALVCELAF 455
+ N LPS + SDHL+LVC+ +F
Sbjct: 397 EEQIGPNR-LPSFNYPSDHLSLVCDFSF 423
Score = 67 (28.6 bits), Expect = 2.1e-19, Sum P(3) = 2.1e-19
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 285 IPVLLAGDLNSSPNSALYQFLASSELDV 312
IP+++ GD N+ P +Y+ ASS L++
Sbjct: 317 IPLIICGDFNAEPTEEVYKHFASSSLNL 344
Score = 37 (18.1 bits), Expect = 1.8e-05, Sum P(3) = 1.8e-05
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 90 QWTFSSRDLSKFKDKFV 106
QW ++ L + KD FV
Sbjct: 147 QWNILAQALGEGKDNFV 163
>UNIPROTKB|A2VE74 [details] [associations]
symbol:CCRN4L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] Pfam:PF03372 eggNOG:COG5239
GeneTree:ENSGT00550000074364 InterPro:IPR005135 SUPFAM:SSF56219
CTD:25819 HOGENOM:HOG000237357 HOVERGEN:HBG006512 OMA:HPEYLVS
OrthoDB:EOG4NZTTH EMBL:DAAA02044446 EMBL:BC133608 IPI:IPI00693881
RefSeq:NP_001075923.1 UniGene:Bt.27843 STRING:A2VE74
Ensembl:ENSBTAT00000007876 GeneID:540641 KEGG:bta:540641
InParanoid:A2VE74 NextBio:20878745 Uniprot:A2VE74
Length = 427
Score = 168 (64.2 bits), Expect = 3.1e-19, Sum P(3) = 3.1e-19
Identities = 45/121 (37%), Positives = 64/121 (52%)
Query: 107 VVSYNILGVENAL-KHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDH-FDD 164
V+ +NIL AL + D + + P + LKWE RK LI EE+ +Y ILCLQEVDH FD
Sbjct: 145 VMQWNILA--QALGEGKDNFVQCPMEALKWEERKCLILEEILAYQPDILCLQEVDHYFDT 202
Query: 165 LDDLLQMDGFRGVYKART---------GDANDGCAIFWKEKLFTLLHQENIEFQNFGLRH 215
LL G++G + + + DGCA+F+ + F L++ NI L+
Sbjct: 203 FQPLLSRLGYQGTFFPKPWSPCLDVEHNNGPDGCALFFLQNRFKLVNSANIRLTAMTLKT 262
Query: 216 N 216
N
Sbjct: 263 N 263
Score = 104 (41.7 bits), Expect = 3.1e-19, Sum P(3) = 3.1e-19
Identities = 32/88 (36%), Positives = 47/88 (53%)
Query: 373 LNLCSAYFGIPGSHRTRDNLGEPLATSYHSKFMG----TVDYIWHTEELVPVR-VLETLP 427
LNL SAY + + D EP T++ + G T+DYIW++ + + VR L+ L
Sbjct: 342 LNLNSAYKLL-----SADGQSEPPYTTWKIRTSGECRHTLDYIWYSRQALSVRSALDLLT 396
Query: 428 VNILRRNGGLPSERWGSDHLALVCELAF 455
+ N LPS + SDHL+LVC+ F
Sbjct: 397 EEQIGPNR-LPSFNYPSDHLSLVCDFTF 423
Score = 66 (28.3 bits), Expect = 3.1e-19, Sum P(3) = 3.1e-19
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 285 IPVLLAGDLNSSPNSALYQFLASSELDV 312
IP+++ GD N+ P +Y+ ASS L++
Sbjct: 317 IPLIVCGDFNAEPTEEVYKHFASSSLNL 344
Score = 37 (18.1 bits), Expect = 4.8e-05, Sum P(3) = 4.8e-05
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 90 QWTFSSRDLSKFKDKFV 106
QW ++ L + KD FV
Sbjct: 147 QWNILAQALGEGKDNFV 163
>MGI|MGI:109382 [details] [associations]
symbol:Ccrn4l "CCR4 carbon catabolite repression 4-like (S.
cerevisiae)" species:10090 "Mus musculus" [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=IGI] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IGI] [GO:0048511 "rhythmic process" evidence=IEA]
Pfam:PF03372 MGI:MGI:109382 GO:GO:0048511 GO:GO:0000932
eggNOG:COG5239 GeneTree:ENSGT00550000074364 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0033962 CleanEx:MM_CCR4 GO:GO:0000290
CTD:25819 HOGENOM:HOG000237357 HOVERGEN:HBG006512 OMA:HPEYLVS
OrthoDB:EOG4NZTTH ChiTaRS:CCRN4L EMBL:U70139 EMBL:AF183960
EMBL:AF199491 EMBL:AK087790 IPI:IPI00133829 IPI:IPI00662222
RefSeq:NP_033964.1 UniGene:Mm.86541 ProteinModelPortal:O35710
SMR:O35710 STRING:O35710 PhosphoSite:O35710 PaxDb:O35710
PRIDE:O35710 Ensembl:ENSMUST00000023849 Ensembl:ENSMUST00000167780
GeneID:12457 KEGG:mmu:12457 UCSC:uc008pdn.2 InParanoid:O35710
BRENDA:3.1.13.4 NextBio:281308 Bgee:O35710 Genevestigator:O35710
GermOnline:ENSMUSG00000023087 Uniprot:O35710
Length = 429
Score = 169 (64.5 bits), Expect = 1.6e-18, Sum P(3) = 1.6e-18
Identities = 47/131 (35%), Positives = 65/131 (49%)
Query: 97 DLSKFKDKFVVVSYNILGVENAL-KHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILC 155
D S V+ +NIL AL + D + + P + LKWE RK LI EE+ +Y ILC
Sbjct: 133 DCSSSHSPIRVMQWNILA--QALGEGKDNFVQCPVEALKWEERKCLILEEILAYQPDILC 190
Query: 156 LQEVDH-FDDLDDLLQMDGFRGVYKART---------GDANDGCAIFWKEKLFTLLHQEN 205
LQEVDH FD LL G++G + + + DGCA+F+ + F L+ N
Sbjct: 191 LQEVDHYFDTFQPLLSRLGYQGTFFPKPWSPCLDVEHNNGPDGCALFFLQNRFKLISSTN 250
Query: 206 IEFQNFGLRHN 216
I L+ N
Sbjct: 251 IRLTAMTLKTN 261
Score = 96 (38.9 bits), Expect = 1.6e-18, Sum P(3) = 1.6e-18
Identities = 31/88 (35%), Positives = 46/88 (52%)
Query: 373 LNLCSAYFGIPGSHRTRDNLGEPLATSYHSKFMG----TVDYIWHTEELVPVR-VLETLP 427
LNL SAY + + D EP T++ + G T+DYIW++ + V L+ L
Sbjct: 340 LNLNSAYKLL-----SPDGQSEPPYTTWKIRTSGECRHTLDYIWYSRHALSVTSALDLLT 394
Query: 428 VNILRRNGGLPSERWGSDHLALVCELAF 455
+ N LPS + SDHL+LVC+ +F
Sbjct: 395 EEQIGPNR-LPSFHYPSDHLSLVCDFSF 421
Score = 66 (28.3 bits), Expect = 1.6e-18, Sum P(3) = 1.6e-18
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 285 IPVLLAGDLNSSPNSALYQFLASSELDV 312
IP+++ GD N+ P +Y+ ASS L++
Sbjct: 315 IPLIVCGDFNAEPTEEVYKHFASSSLNL 342
Score = 37 (18.1 bits), Expect = 0.00037, Sum P(3) = 0.00037
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 90 QWTFSSRDLSKFKDKFV 106
QW ++ L + KD FV
Sbjct: 145 QWNILAQALGEGKDNFV 161
>TAIR|locus:2028611 [details] [associations]
symbol:AT1G31500 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0016787 "hydrolase activity" evidence=ISS]
Pfam:PF03372 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0046872 GO:GO:0006351
EMBL:AC074360 GO:GO:0003723 GO:GO:0090305 eggNOG:COG5239
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0004535 KO:K12603
EMBL:AC027135 EMBL:BT005746 EMBL:BT006109 EMBL:BX813786
EMBL:BX815872 EMBL:BX814736 EMBL:AK228566 IPI:IPI00516607
IPI:IPI00534982 IPI:IPI00548899 IPI:IPI00847028 IPI:IPI00915129
IPI:IPI00915138 RefSeq:NP_001077640.1 RefSeq:NP_174435.2
RefSeq:NP_973943.2 RefSeq:NP_973944.1 UniGene:At.40328
ProteinModelPortal:A8MS41 SMR:A8MS41 PaxDb:A8MS41 PRIDE:A8MS41
EnsemblPlants:AT1G31500.4 GeneID:840040 KEGG:ath:AT1G31500
TAIR:At1g31500 HOGENOM:HOG000265770 InParanoid:Q3ED43 OMA:CLKWKAR
PhylomeDB:A8MS41 ProtClustDB:CLSN2680732 Genevestigator:A8MS41
Uniprot:A8MS41
Length = 417
Score = 168 (64.2 bits), Expect = 2.2e-18, Sum P(3) = 2.2e-18
Identities = 41/109 (37%), Positives = 58/109 (53%)
Query: 104 KFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDHFD 163
+F +VSYNIL + +K L PP LKW+ R I + + A CLQEVD +D
Sbjct: 91 RFRLVSYNILA-QVYVKSA-LLPHSPPACLKWKARSHAILSVLKNLQADFFCLQEVDEYD 148
Query: 164 DL-DDLLQMDGFRGVYKARTGDAN-DGCAIFWKEKLFTLLHQENIEFQN 210
+ + G+ G+Y RTG DGCAIF+K L+ +E IE+ +
Sbjct: 149 SFYRNNMDSLGYSGIYIQRTGQRKRDGCAIFYKPSCAELVTKERIEYND 197
Score = 96 (38.9 bits), Expect = 2.2e-18, Sum P(3) = 2.2e-18
Identities = 23/62 (37%), Positives = 35/62 (56%)
Query: 251 NIHVLFNPNRGDIKLGQIRLFLEKA--YK--LSQEWGGIP-VLLAGDLNSSPNSALYQFL 305
N H+ ++P D+KL Q + L + +K +S E+ P +LLAGD NS P +Y +L
Sbjct: 262 NTHLYWDPELADVKLAQAKYLLSRLAQFKTLISDEFECTPSLLLAGDFNSIPGDMVYSYL 321
Query: 306 AS 307
S
Sbjct: 322 VS 323
Score = 65 (27.9 bits), Expect = 2.2e-18, Sum P(3) = 2.2e-18
Identities = 20/62 (32%), Positives = 31/62 (50%)
Query: 393 GEPLATSYHSKFMGTVDYIW--HTEELVPVRVLETLPVNILRRNGGLPSERWGSDHLALV 450
GEP T+ F T+DYI+ ++ + PV +L+ + G LP+ SDHL +
Sbjct: 350 GEPKFTNCTPGFTNTLDYIFISPSDFIKPVSILQLPEPDSPDVVGFLPNHHHPSDHLPIG 409
Query: 451 CE 452
E
Sbjct: 410 AE 411
>ZFIN|ZDB-GENE-050208-306 [details] [associations]
symbol:ccrn4la "CCR4 carbon catabolite repression
4-like a (S. cerevisiae)" species:7955 "Danio rerio" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
Pfam:PF03372 ZFIN:ZDB-GENE-050208-306 GeneTree:ENSGT00550000074364
InterPro:IPR005135 SUPFAM:SSF56219 EMBL:AL929007 IPI:IPI00900988
RefSeq:XP_700794.1 UniGene:Dr.91274 Ensembl:ENSDART00000113469
GeneID:572044 KEGG:dre:572044 CTD:572044 NextBio:20890814
Uniprot:E7F177
Length = 432
Score = 155 (59.6 bits), Expect = 4.6e-18, Sum P(3) = 4.6e-18
Identities = 44/149 (29%), Positives = 72/149 (48%)
Query: 88 HRQWTFSSRDLSKFKDKFVVVSYNILGVENAL-KHPDLYDKVPPKFLKWERRKKLIREEM 146
HR++ + R S ++ +NIL AL + D + + P + L W RK LI EE+
Sbjct: 117 HREFIMT-RACSLQNSPLRIMQWNILA--QALGEGKDGFVRCPMEALNWSERKYLILEEI 173
Query: 147 SSYNASILCLQEVDH-FDDLDDLLQMDGFRGVY---------KARTGDANDGCAIFWKEK 196
+Y ++CLQEVDH FD +L G++ + + DGCA+F+ +
Sbjct: 174 LTYRPDVVCLQEVDHYFDTFQPVLSSLGYQSSFCPKPCSPCLDVHNNNGPDGCALFFNRR 233
Query: 197 LFTLLHQENIEFQNFGLRHN-VAQLCVLK 224
F +LH ++ L+ N VA + L+
Sbjct: 234 RFQMLHTAHLRLSAMMLKTNQVAVVATLR 262
Score = 103 (41.3 bits), Expect = 4.6e-18, Sum P(3) = 4.6e-18
Identities = 26/71 (36%), Positives = 39/71 (54%)
Query: 390 DNLGEPLATSYHSKFMG----TVDYIWHTEELVPVRVLETLPVNILRRNGGLPSERWGSD 445
D EP TS+ + G T+DYIW++E+ V + +P LPS + SD
Sbjct: 355 DRTTEPPYTSWKIRPSGECCSTLDYIWYSEKAFEVDAVLRIPSEEQIGPDRLPSFHYPSD 414
Query: 446 HLALVCELAFA 456
HL+LVC+L+F+
Sbjct: 415 HLSLVCDLSFS 425
Score = 71 (30.1 bits), Expect = 4.6e-18, Sum P(3) = 4.6e-18
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 284 GIPVLLAGDLNSSPNSALYQFLASSEL 310
GIP+++ GD N+ PN +Y+ SS L
Sbjct: 317 GIPLIVCGDFNAEPNEEVYRHFRSSSL 343
>POMBASE|SPCC31H12.08c [details] [associations]
symbol:ccr4 "CCR4-Not complex subunit Ccr4
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004535
"poly(A)-specific ribonuclease activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006354 "DNA-dependent transcription, elongation" evidence=IC]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0030015 "CCR4-NOT core complex" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=ISO] InterPro:IPR001611
PROSITE:PS51450 PomBase:SPCC31H12.08c Pfam:PF03372 GO:GO:0005829
GO:GO:0005634 GO:GO:0006355 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0046872 eggNOG:COG4886 GO:GO:0003723 GO:GO:0090305
InterPro:IPR025875 Pfam:PF12799 InterPro:IPR005135 SUPFAM:SSF56219
GO:GO:0004535 GO:GO:0000289 GO:GO:0030015 KO:K12603
HOGENOM:HOG000294222 OMA:CLQEIDQ OrthoDB:EOG4Z39P3 PIR:T41296
RefSeq:NP_587901.1 ProteinModelPortal:O74874 STRING:O74874
EnsemblFungi:SPCC31H12.08c.1 GeneID:2538913 KEGG:spo:SPCC31H12.08c
NextBio:20800091 GO:GO:0006354 Uniprot:O74874
Length = 690
Score = 180 (68.4 bits), Expect = 1.3e-17, Sum P(3) = 1.3e-17
Identities = 55/204 (26%), Positives = 92/204 (45%)
Query: 104 KFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVD--H 161
KF ++SYN+L A LY P L W RK LI +E+ YNA I+CLQEVD +
Sbjct: 335 KFTIMSYNVLCERYATS--TLYGYTPSWALSWSYRKDLIMQELGGYNADIICLQEVDVEN 392
Query: 162 FDDL-DDLLQMDGFRGVY--KARTGDAN-------DGCAIFWKEKLFTLLHQENIEF-QN 210
+D + + G++GV+ K+R N DGCA F+K + + + IE+ Q
Sbjct: 393 YDTFFAPQMSLKGYKGVHFPKSRVRTMNEVERRIVDGCATFFKTSKYVMHEKMVIEYNQA 452
Query: 211 FGLRHNVAQLCVLKMNXXXXXXXXXXXXXXXXXXXXXXX--GNIHVLFNPNRGDIKLGQI 268
LR +L N N H+ ++P D+K+ Q+
Sbjct: 453 PSLRRQDIKLTSNMYNRVMTKDNISVITLLENKENGSRLIVANCHIHWDPQFRDVKVIQV 512
Query: 269 RLFLEKAYKLSQEWGGIPVLLAGD 292
+ +++ +++ ++ +P + D
Sbjct: 513 AMLMDEIAQVATKFRNMPSKIPSD 536
Score = 81 (33.6 bits), Expect = 1.3e-17, Sum P(3) = 1.3e-17
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 398 TSYHSKFMGTVDYIWHTEELVPVR-VLETLPVNILRRNGGLPSERWGSDHLALVCE 452
T+Y F G +D+IW+T + V +L+ + + L G P+ + SDH+ L+ E
Sbjct: 615 TNYTPGFKGAIDHIWYTGNSLEVTGLLKGVDKDYLSGVVGFPNAHFPSDHICLLAE 670
Score = 70 (29.7 bits), Expect = 1.3e-17, Sum P(3) = 1.3e-17
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 281 EWGGIPVLLAGDLNSSPNSALYQFLASSELDVCQHD 316
E+ IP+L+ GD NS S +Y FL+S + D
Sbjct: 547 EYLKIPILICGDFNSVQGSGVYDFLSSGSISQNHED 582
>UNIPROTKB|F1NVT2 [details] [associations]
symbol:CCRN4L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IEA] [GO:0033962 "cytoplasmic mRNA
processing body assembly" evidence=IEA] Pfam:PF03372
GeneTree:ENSGT00550000074364 InterPro:IPR005135 SUPFAM:SSF56219
OMA:HPEYLVS EMBL:AADN02016273 IPI:IPI00577593
Ensembl:ENSGALT00000015887 ArrayExpress:F1NVT2 Uniprot:F1NVT2
Length = 371
Score = 164 (62.8 bits), Expect = 1.6e-17, Sum P(3) = 1.6e-17
Identities = 48/130 (36%), Positives = 68/130 (52%)
Query: 107 VVSYNILGVENAL-KHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDH-FDD 164
V+ +NIL AL + D + + P + LKWE RK LI EE+ +Y ILCLQEVDH FD
Sbjct: 85 VMQWNILA--QALGEGKDNFVQCPMEALKWEERKCLILEEILAYKPDILCLQEVDHYFDT 142
Query: 165 LDDLLQMDGFRGVY---------KARTGDANDGCAIFWKEKLFTLLHQENIEFQNFGLRH 215
+ LL G++ + + DGCA+F+ ++ F L++ NI L+
Sbjct: 143 FEPLLSRLGYQCTFFPKPWSPCLDVEQNNGPDGCALFFLKERFELINSANIRLTAMKLKT 202
Query: 216 N-VAQLCVLK 224
N VA LK
Sbjct: 203 NQVAIAQTLK 212
Score = 95 (38.5 bits), Expect = 1.6e-17, Sum P(3) = 1.6e-17
Identities = 32/93 (34%), Positives = 48/93 (51%)
Query: 373 LNLCSAYFGIPGSHRTRDNLGEPLATSYHSKFMG----TVDYIWHTEELVPVR-VLETLP 427
LNL SAY + + D EP T++ + G T+DYIW+++ + V L L
Sbjct: 282 LNLNSAYKLL-----SPDGQSEPPYTTWKIRPSGECRHTLDYIWYSQHALNVNSALGLLT 336
Query: 428 VNILRRNGGLPSERWGSDHLALVCELAFANNGD 460
+ N LPS + SDHL+LVC+ +F + D
Sbjct: 337 EEQIGPNR-LPSFNYPSDHLSLVCDFSFNQDPD 368
Score = 59 (25.8 bits), Expect = 1.6e-17, Sum P(3) = 1.6e-17
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 285 IPVLLAGDLNSSPNSALYQFLASSELDV 312
IP+++ GD N+ P +Y+ ++S L++
Sbjct: 257 IPLIICGDFNAEPTEEVYREFSNSSLNL 284
>ZFIN|ZDB-GENE-060519-25 [details] [associations]
symbol:pde12 "phosphodiesterase 12" species:7955
"Danio rerio" [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] Pfam:PF03372
ZFIN:ZDB-GENE-060519-25 GeneTree:ENSGT00550000074364
InterPro:IPR005135 SUPFAM:SSF56219 EMBL:FP067440 EMBL:CU638695
IPI:IPI00882873 Ensembl:ENSDART00000067608 ArrayExpress:F1RBC5
Bgee:F1RBC5 Uniprot:F1RBC5
Length = 591
Score = 141 (54.7 bits), Expect = 2.1e-17, Sum P(3) = 2.1e-17
Identities = 42/125 (33%), Positives = 64/125 (51%)
Query: 92 TFSSRDL--SKFKDK--FVVVSYNILG---VENALKHPDLYDKVPPKFLKWERRKKLIRE 144
TF +R + K D+ VVSYNIL + L LY P L+ + R+ LI++
Sbjct: 254 TFDNRHIYTQKLTDEGSLRVVSYNILADVYAQTDLSKTVLYPYCAPYALQMDYRQNLIKK 313
Query: 145 EMSSYNASILCLQEVDH---FDDLDDLLQMDGFRGVYKARTGDANDGCAIFWKEKLFTLL 201
E+S YNA I+CLQEVD D L L G GV++ + ++G A +++ L+
Sbjct: 314 ELSGYNADIICLQEVDKCVFVDVLCPALDAFGLDGVFRIKEKQ-HEGLATYFRRSKLKLV 372
Query: 202 HQENI 206
Q ++
Sbjct: 373 EQYDV 377
Score = 102 (41.0 bits), Expect = 2.1e-17, Sum P(3) = 2.1e-17
Identities = 20/58 (34%), Positives = 38/58 (65%)
Query: 250 GNIHVLFNPNRGDIKLGQIRLFLEKAYKL-SQEWGGIPVLLAGDLNSSPNSALYQFLA 306
GN H+ + P G+++L QI + LE ++ +++ G ++ +GD NS+P+S L+Q L+
Sbjct: 431 GNTHLYWRPEGGNVRLVQIAVALEHMKQVVTEKHPGARLIFSGDFNSTPSSGLFQLLS 488
Score = 88 (36.0 bits), Expect = 2.1e-17, Sum P(3) = 2.1e-17
Identities = 24/81 (29%), Positives = 38/81 (46%)
Query: 381 GIPGSHRTRDNLGEPLATSYHSKFMGTVDYIWHTEELVPVRVLETLP-VNILRRNGGLPS 439
G+ + G P T++ F G +DYI+ + V + LP + + LPS
Sbjct: 511 GLTNPFQLSSACGVPDFTNFVGGFQGCLDYIFVEPRTLQVEQVIPLPSLEEVSNCVALPS 570
Query: 440 ERWGSDHLALVCELAFANNGD 460
SDH+ALVC+L + + D
Sbjct: 571 ISHPSDHIALVCDLKWTTDSD 591
>UNIPROTKB|F1NGS9 [details] [associations]
symbol:PDE12 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005739 "mitochondrion" evidence=IEA] Pfam:PF03372
GO:GO:0005739 GeneTree:ENSGT00550000074364 InterPro:IPR005135
SUPFAM:SSF56219 OMA:FRWYKEA EMBL:AADN02014019 IPI:IPI00572753
Ensembl:ENSGALT00000009018 Uniprot:F1NGS9
Length = 569
Score = 173 (66.0 bits), Expect = 4.2e-16, Sum P(2) = 4.2e-16
Identities = 57/220 (25%), Positives = 100/220 (45%)
Query: 124 LYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDH--F-DDLDDLLQMDGFRGVYKA 180
LY P L+ + R+ L+++E++ YNA ++CLQEVD F D L L G G++K
Sbjct: 273 LYPYCAPYALEVDYRQNLLKKELAGYNADLICLQEVDKSVFADSLAPALDAFGLEGLFKI 332
Query: 181 RTGDANDGCAIFWKEKLFTLLHQENIEFQ--------NFGLRHNVAQLCVL--KMNXXXX 230
+ ++G A F++ F+LL + +I F + LR + + + K+
Sbjct: 333 KEKQ-HEGLATFYRRDKFSLLSRHDITFSEALLSEPLHAELRDRLGRYPAVRDKVLQRSS 391
Query: 231 XXXXXXXXXXXXXXXXXXXGNIHVLFNPNR--GDIKLGQIRLFLEKA-YKLSQEWGGIPV 287
N H+ ++P G+I+L QI + L Y + IP+
Sbjct: 392 VLQVSVLQSETDPSKKLCVANTHLYWHPKALGGNIRLIQIAVALSHIKYVACDLYPNIPL 451
Query: 288 LLAGDLNSSPNSALYQFLASSELDVCQHDRRHISGQFAKC 327
+ GD NS+P+S Y F+ + + H+ +G+ +C
Sbjct: 452 IFCGDFNSTPSSGTYGFINTGGIAE-DHEDWASNGEEERC 490
Score = 145 (56.1 bits), Expect = 6.2e-13, Sum P(2) = 6.2e-13
Identities = 37/107 (34%), Positives = 58/107 (54%)
Query: 108 VSYNILG---VENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDH--F 162
VSYNIL + LY P L+ + R+ L+++E++ YNA ++CLQEVD F
Sbjct: 254 VSYNILADAYAQTEFSRTVLYPYCAPYALEVDYRQNLLKKELAGYNADLICLQEVDKSVF 313
Query: 163 -DDLDDLLQMDGFRGVYKARTGDANDGCAIFWKEKLFTLLHQENIEF 208
D L L G G++K + ++G A F++ F+LL + +I F
Sbjct: 314 ADSLAPALDAFGLEGLFKIKEKQ-HEGLATFYRRDKFSLLSRHDITF 359
Score = 102 (41.0 bits), Expect = 4.2e-16, Sum P(2) = 4.2e-16
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 382 IPGSH--RTRDNLGEPLATSYHSKFMGTVDYIWHTEELVPVRVLETLPVNI-LRRNGGLP 438
+P SH + + GEP T+Y F G +DY++ + + V + LP + + + LP
Sbjct: 492 MPLSHPFKLQSACGEPAYTNYVGGFYGCLDYVFIDQNALEVEQVIPLPSHEEVTTHQALP 551
Query: 439 SERWGSDHLALVCEL 453
S SDH+ALVC+L
Sbjct: 552 SVSHPSDHIALVCDL 566
>UNIPROTKB|E1C678 [details] [associations]
symbol:CNOT6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:2000327 "positive regulation of ligand-dependent
nuclear receptor transcription coactivator activity" evidence=IEA]
InterPro:IPR001611 PROSITE:PS51450 Pfam:PF03372 InterPro:IPR003591
SMART:SM00369 GeneTree:ENSGT00550000074364 InterPro:IPR005135
SUPFAM:SSF56219 KO:K12603 OMA:YATSDTY CTD:57472 EMBL:AADN02028573
EMBL:AADN02028574 EMBL:AADN02028575 IPI:IPI00583544
RefSeq:XP_414612.3 UniGene:Gga.56102 Ensembl:ENSGALT00000009699
GeneID:416293 KEGG:gga:416293 Uniprot:E1C678
Length = 557
Score = 153 (58.9 bits), Expect = 4.0e-15, Sum P(3) = 4.0e-15
Identities = 46/141 (32%), Positives = 70/141 (49%)
Query: 89 RQWTFSSR-DLSKFKDKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMS 147
R W D ++ F V+ YN+L + A + LY P L WE RKK I +E+
Sbjct: 172 RSWIMLQEPDRTRPTALFSVMCYNVLCDKYATRQ--LYGYCPSWALNWEYRKKAIMQEIL 229
Query: 148 SYNASILCLQEVD---HFDDLDDLLQMDGFRGVY----KARTGDAN-----DGCAIFWKE 195
S NA I+ LQEV+ ++ L+ G+ G + +ART DGCAIF+K
Sbjct: 230 SCNADIISLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKT 289
Query: 196 KLFTLLHQENIEFQNFGLRHN 216
+ FTL+ + +EF + ++
Sbjct: 290 EKFTLVQKHTVEFNQLAMANS 310
Score = 91 (37.1 bits), Expect = 4.0e-15, Sum P(3) = 4.0e-15
Identities = 24/82 (29%), Positives = 46/82 (56%)
Query: 251 NIHVLFNPNRGDIKLGQIRLFL-------EKAYK-----LSQEWGGIPVLLAGDLNSSPN 298
N H+ ++P+ D+KL Q +FL +KA + ++ E G IP++L DLNS P+
Sbjct: 359 NAHMHWDPDYSDVKLVQTMMFLSEVKNIIDKASRSLKPGVAGELGTIPLVLCADLNSLPD 418
Query: 299 SALYQFLASSELDVCQHDRRHI 320
S + ++L++ ++ D + +
Sbjct: 419 SGVVEYLSTGGVETNHKDFKEL 440
Score = 62 (26.9 bits), Expect = 4.0e-15, Sum P(3) = 4.0e-15
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 398 TSYHSKFMGTVDYIWHTE-ELVPVRVLETLPVNILRRNG--GLPSERWGSDHLALVCEL 453
T+Y F G +DYI++++ +L + +L L + L N G P SDH +L +L
Sbjct: 480 TNYTFDFKGIIDYIFYSKPQLNILGILGPLDHHWLIENNISGCPHPLIPSDHFSLFAQL 538
>UNIPROTKB|A6QR51 [details] [associations]
symbol:CNOT6 "CNOT6 protein" species:9913 "Bos taurus"
[GO:2000327 "positive regulation of ligand-dependent nuclear
receptor transcription coactivator activity" evidence=IEA]
InterPro:IPR001611 PROSITE:PS51450 Pfam:PF03372 eggNOG:COG4886
InterPro:IPR003591 SMART:SM00369 GeneTree:ENSGT00550000074364
InterPro:IPR005135 SUPFAM:SSF56219 KO:K12603 OMA:YATSDTY
HOGENOM:HOG000294222 HOVERGEN:HBG052641 OrthoDB:EOG43TZV7 CTD:57472
EMBL:DAAA02018941 EMBL:DAAA02018942 EMBL:DAAA02018943 EMBL:BC150116
IPI:IPI00711873 RefSeq:NP_001094631.1 UniGene:Bt.37548
STRING:A6QR51 Ensembl:ENSBTAT00000023088 GeneID:534707
KEGG:bta:534707 InParanoid:A6QR51 NextBio:20876510 Uniprot:A6QR51
Length = 557
Score = 148 (57.2 bits), Expect = 4.7e-15, Sum P(3) = 4.7e-15
Identities = 45/141 (31%), Positives = 70/141 (49%)
Query: 89 RQWTFSSR-DLSKFKDKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMS 147
R W D ++ F V+ YN+L + A + LY P L W+ RKK I +E+
Sbjct: 172 RSWIMLQEPDRTRPTALFSVMCYNVLCDKYATRQ--LYGYCPSWALNWDYRKKAIIQEIL 229
Query: 148 SYNASILCLQEVD---HFDDLDDLLQMDGFRGVY----KARTGDAN-----DGCAIFWKE 195
S NA I+ LQEV+ ++ L+ G+ G + +ART DGCAIF+K
Sbjct: 230 SCNADIISLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKT 289
Query: 196 KLFTLLHQENIEFQNFGLRHN 216
+ FTL+ + +EF + ++
Sbjct: 290 EKFTLVQKHTVEFNQLAMANS 310
Score = 94 (38.1 bits), Expect = 4.7e-15, Sum P(3) = 4.7e-15
Identities = 25/82 (30%), Positives = 45/82 (54%)
Query: 251 NIHVLFNPNRGDIKLGQIRLFL-------EKAYKLSQ-----EWGGIPVLLAGDLNSSPN 298
N H+ ++P D+KL Q +FL +KA + Q E+G IP++L DLNS P+
Sbjct: 359 NAHMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRSLQSSVLGEFGTIPLVLCADLNSLPD 418
Query: 299 SALYQFLASSELDVCQHDRRHI 320
S + ++L++ ++ D + +
Sbjct: 419 SGVVEYLSTGGVETNHKDFKEL 440
Score = 64 (27.6 bits), Expect = 4.7e-15, Sum P(3) = 4.7e-15
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 398 TSYHSKFMGTVDYIWHTE-ELVPVRVLETLPVNILRRNG--GLPSERWGSDHLALVCEL 453
T+Y F G +DYI++++ +L + +L L + L N G P SDH +L +L
Sbjct: 480 TNYTFDFKGIIDYIFYSKPQLNTLGILGPLDHHWLVENNISGCPHPLIPSDHFSLFAQL 538
>ZFIN|ZDB-GENE-071004-97 [details] [associations]
symbol:zgc:171797 "zgc:171797" species:7955 "Danio
rerio" [GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001611
PROSITE:PS51450 Pfam:PF03372 ZFIN:ZDB-GENE-071004-97
InterPro:IPR025875 Pfam:PF12799 GeneTree:ENSGT00550000074364
InterPro:IPR005135 SUPFAM:SSF56219 OMA:ENVYANR EMBL:AL935334
IPI:IPI00495563 Ensembl:ENSDART00000030357 Bgee:F1QA17
Uniprot:F1QA17
Length = 558
Score = 138 (53.6 bits), Expect = 5.0e-15, Sum P(3) = 5.0e-15
Identities = 43/141 (30%), Positives = 68/141 (48%)
Query: 89 RQW-TFSSRDLSKFKDKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMS 147
R W + S+ V+ YN+L + A + LY P L W RKK I +E+
Sbjct: 172 RSWIVLQEPERSRPTALLTVMCYNVLCDKYATRQ--LYGYCPSWALNWSYRKKSIMQEIL 229
Query: 148 SYNASILCLQEVD---HFDDLDDLLQMDGFRGVY----KART---GDAN--DGCAIFWKE 195
+ NA I+ LQEV+ +F+ L G+ G + +ART D DGCAIF+K
Sbjct: 230 NCNADIISLQEVETEQYFNFFLLELSKQGYDGFFSPKSRARTMSESDRKHVDGCAIFYKT 289
Query: 196 KLFTLLHQENIEFQNFGLRHN 216
+ F ++ + +EF + ++
Sbjct: 290 EKFNVVQKHTVEFNQLAMANS 310
Score = 96 (38.9 bits), Expect = 5.0e-15, Sum P(3) = 5.0e-15
Identities = 31/104 (29%), Positives = 55/104 (52%)
Query: 251 NIHVLFNPNRGDIKLGQIRLFL-------EKAYK------LSQEWGGIPVLLAGDLNSSP 297
N H+ ++P D+KL Q +FL +KA + +S E IP++L DLNS P
Sbjct: 359 NAHMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRSLKHSSVSGETSSIPLVLCADLNSLP 418
Query: 298 NSALYQFLASSELDVCQH-DRRHISGQFAKCRDIDFQKRNSTSD 340
+S + ++L++ +D C H D + + + + + +NSTS+
Sbjct: 419 DSGVVEYLSTGGVD-CTHKDFKELRYSDS-LTNFNCNGKNSTSN 460
Score = 73 (30.8 bits), Expect = 5.0e-15, Sum P(3) = 5.0e-15
Identities = 21/59 (35%), Positives = 30/59 (50%)
Query: 398 TSYHSKFMGTVDYIWHTE-ELVPVRVLETLPVNILRRNG--GLPSERWGSDHLALVCEL 453
T+Y F G +DYI+++ +L + VL L N L N G P SDH +L +L
Sbjct: 481 TNYTFDFRGVIDYIFYSRPQLNVLGVLGPLDTNWLLENNISGCPHPLIPSDHFSLFAQL 539
>UNIPROTKB|E2QS92 [details] [associations]
symbol:CNOT6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:2000327 "positive regulation of
ligand-dependent nuclear receptor transcription coactivator
activity" evidence=IEA] InterPro:IPR001611 PROSITE:PS51450
Pfam:PF03372 InterPro:IPR003591 SMART:SM00369
GeneTree:ENSGT00550000074364 InterPro:IPR005135 SUPFAM:SSF56219
EMBL:AAEX03007668 RefSeq:XP_538584.2 Ensembl:ENSCAFT00000000745
GeneID:481463 Uniprot:E2QS92
Length = 557
Score = 148 (57.2 bits), Expect = 6.0e-15, Sum P(3) = 6.0e-15
Identities = 45/141 (31%), Positives = 70/141 (49%)
Query: 89 RQWTFSSR-DLSKFKDKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMS 147
R W D ++ F V+ YN+L + A + LY P L W+ RKK I +E+
Sbjct: 172 RSWIMLQEPDRTRPTALFSVMCYNVLCDKYATRQ--LYGYCPSWALNWDYRKKAIIQEIL 229
Query: 148 SYNASILCLQEVD---HFDDLDDLLQMDGFRGVY----KARTGDAN-----DGCAIFWKE 195
S NA I+ LQEV+ ++ L+ G+ G + +ART DGCAIF+K
Sbjct: 230 SCNADIISLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKT 289
Query: 196 KLFTLLHQENIEFQNFGLRHN 216
+ FTL+ + +EF + ++
Sbjct: 290 EKFTLVQKHTVEFNQLAMANS 310
Score = 93 (37.8 bits), Expect = 6.0e-15, Sum P(3) = 6.0e-15
Identities = 25/82 (30%), Positives = 45/82 (54%)
Query: 251 NIHVLFNPNRGDIKLGQIRLFL-------EKAYKLSQ-----EWGGIPVLLAGDLNSSPN 298
N H+ ++P D+KL Q +FL +KA + Q E+G IP++L DLNS P+
Sbjct: 359 NAHMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRNLQSSVLGEFGTIPLVLCADLNSLPD 418
Query: 299 SALYQFLASSELDVCQHDRRHI 320
S + ++L++ ++ D + +
Sbjct: 419 SGVVEYLSTGGVETNHKDFKEL 440
Score = 64 (27.6 bits), Expect = 6.0e-15, Sum P(3) = 6.0e-15
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 398 TSYHSKFMGTVDYIWHTE-ELVPVRVLETLPVNILRRNG--GLPSERWGSDHLALVCEL 453
T+Y F G +DYI++++ +L + +L L + L N G P SDH +L +L
Sbjct: 480 TNYTFDFKGIIDYIFYSKPQLNTLGILGPLDHHWLVENNISGCPHPLIPSDHFSLFAQL 538
>UNIPROTKB|F1S5Q4 [details] [associations]
symbol:CNOT6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000327 "positive regulation of ligand-dependent
nuclear receptor transcription coactivator activity" evidence=IEA]
InterPro:IPR001611 PROSITE:PS51450 Pfam:PF03372 InterPro:IPR003591
SMART:SM00369 InterPro:IPR025875 Pfam:PF12799
GeneTree:ENSGT00550000074364 InterPro:IPR005135 SUPFAM:SSF56219
OMA:ENNANED EMBL:CU929694 Ensembl:ENSSSCT00000015302 Uniprot:F1S5Q4
Length = 566
Score = 146 (56.5 bits), Expect = 8.7e-15, Sum P(3) = 8.7e-15
Identities = 45/141 (31%), Positives = 70/141 (49%)
Query: 89 RQWTFSSR-DLSKFKDKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMS 147
R W D ++ F V+ YN+L + A + LY P L W+ RKK I +E+
Sbjct: 181 RSWIMLQEPDRTRPTALFSVMCYNVLCDKYATRQ--LYGYCPSWALNWDYRKKAIIQEIL 238
Query: 148 SYNASILCLQEVD---HFDDLDDLLQMDGFRGVY----KARTGDAN-----DGCAIFWKE 195
S NA I+ LQEV+ ++ L+ G+ G + +ART DGCAIF+K
Sbjct: 239 SCNADIISLQEVETEQYYSFFLVELKDRGYSGFFSPKSRARTMSEQERKHVDGCAIFFKT 298
Query: 196 KLFTLLHQENIEFQNFGLRHN 216
+ FTL+ + +EF + ++
Sbjct: 299 EKFTLVQKHTVEFNQLAMANS 319
Score = 94 (38.1 bits), Expect = 8.7e-15, Sum P(3) = 8.7e-15
Identities = 25/82 (30%), Positives = 45/82 (54%)
Query: 251 NIHVLFNPNRGDIKLGQIRLFL-------EKAYKLSQ-----EWGGIPVLLAGDLNSSPN 298
N H+ ++P D+KL Q +FL +KA + Q E+G IP++L DLNS P+
Sbjct: 368 NAHMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRSLQSSVLGEFGTIPLVLCADLNSLPD 427
Query: 299 SALYQFLASSELDVCQHDRRHI 320
S + ++L++ ++ D + +
Sbjct: 428 SGVVEYLSTGGVETNHKDFKEL 449
Score = 64 (27.6 bits), Expect = 8.7e-15, Sum P(3) = 8.7e-15
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 398 TSYHSKFMGTVDYIWHTE-ELVPVRVLETLPVNILRRNG--GLPSERWGSDHLALVCEL 453
T+Y F G +DYI++++ +L + +L L + L N G P SDH +L +L
Sbjct: 489 TNYTFDFKGIIDYIFYSKPQLNTLGILGPLDHHWLVENNISGCPHPLIPSDHFSLFAQL 547
>UNIPROTKB|Q9ULM6 [details] [associations]
symbol:CNOT6 "CCR4-NOT transcription complex subunit 6"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:2000327 "positive regulation of ligand-dependent
nuclear receptor transcription coactivator activity" evidence=IDA]
[GO:0035195 "gene silencing by miRNA" evidence=TAS] [GO:0043928
"exonucleolytic nuclear-transcribed mRNA catabolic process involved
in deadenylation-dependent decay" evidence=IDA] [GO:0030014
"CCR4-NOT complex" evidence=IDA] [GO:0000288 "nuclear-transcribed
mRNA catabolic process, deadenylation-dependent decay"
evidence=TAS] [GO:0000289 "nuclear-transcribed mRNA poly(A) tail
shortening" evidence=TAS] [GO:0004535 "poly(A)-specific
ribonuclease activity" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR001611 PROSITE:PS51450
Pfam:PF03372 GO:GO:0005829 GO:GO:0005634 GO:GO:0006355
GO:GO:0046872 eggNOG:COG4886 InterPro:IPR003591 SMART:SM00369
GO:GO:0006351 GO:GO:0003723 InterPro:IPR005135 SUPFAM:SSF56219
EMBL:CH471165 GO:GO:0004535 GO:GO:0000289 KO:K12603 OMA:YATSDTY
HOGENOM:HOG000294222 CleanEx:HS_CCR4 HOVERGEN:HBG052641
OrthoDB:EOG43TZV7 EMBL:AB033020 EMBL:BC152469 IPI:IPI00008205
RefSeq:NP_056270.2 UniGene:Hs.608380 ProteinModelPortal:Q9ULM6
SMR:Q9ULM6 DIP:DIP-46838N IntAct:Q9ULM6 STRING:Q9ULM6
PhosphoSite:Q9ULM6 DMDM:46396033 PRIDE:Q9ULM6 DNASU:57472
Ensembl:ENST00000261951 Ensembl:ENST00000393356 GeneID:57472
KEGG:hsa:57472 UCSC:uc003mlx.3 CTD:57472 GeneCards:GC05P179921
HGNC:HGNC:14099 HPA:HPA044568 MIM:608951 neXtProt:NX_Q9ULM6
PharmGKB:PA26677 InParanoid:Q9ULM6 PhylomeDB:Q9ULM6
GenomeRNAi:57472 NextBio:63703 ArrayExpress:Q9ULM6 Bgee:Q9ULM6
CleanEx:HS_CNOT6 Genevestigator:Q9ULM6 GermOnline:ENSG00000113300
GO:GO:2000327 Uniprot:Q9ULM6
Length = 557
Score = 147 (56.8 bits), Expect = 1.6e-14, Sum P(3) = 1.6e-14
Identities = 45/141 (31%), Positives = 70/141 (49%)
Query: 89 RQWTFSSR-DLSKFKDKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMS 147
R W D ++ F V+ YN+L + A + LY P L W+ RKK I +E+
Sbjct: 172 RSWIMLQEPDRTRPTALFSVMCYNVLCDKYATRQ--LYGYCPSWALNWDYRKKAIIQEIL 229
Query: 148 SYNASILCLQEVD---HFDDLDDLLQMDGFRGVY----KARTGDAN-----DGCAIFWKE 195
S NA I+ LQEV+ ++ L+ G+ G + +ART DGCAIF+K
Sbjct: 230 SCNADIVSLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKT 289
Query: 196 KLFTLLHQENIEFQNFGLRHN 216
+ FTL+ + +EF + ++
Sbjct: 290 EKFTLVQKHTVEFNQLAMANS 310
Score = 90 (36.7 bits), Expect = 1.6e-14, Sum P(3) = 1.6e-14
Identities = 24/82 (29%), Positives = 44/82 (53%)
Query: 251 NIHVLFNPNRGDIKLGQIRLFLEKAY----KLSQ--------EWGGIPVLLAGDLNSSPN 298
N H+ ++P D+KL Q +FL + K S+ E+G IP++L DLNS P+
Sbjct: 359 NAHMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRNLKSSVLGEFGTIPLVLCADLNSLPD 418
Query: 299 SALYQFLASSELDVCQHDRRHI 320
S + ++L++ ++ D + +
Sbjct: 419 SGVVEYLSTGGVETNHKDFKEL 440
Score = 64 (27.6 bits), Expect = 1.6e-14, Sum P(3) = 1.6e-14
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 398 TSYHSKFMGTVDYIWHTE-ELVPVRVLETLPVNILRRNG--GLPSERWGSDHLALVCEL 453
T+Y F G +DYI++++ +L + +L L + L N G P SDH +L +L
Sbjct: 480 TNYTFDFKGIIDYIFYSKPQLNTLGILGPLDHHWLVENNISGCPHPLIPSDHFSLFAQL 538
>UNIPROTKB|Q5BJ41 [details] [associations]
symbol:cnot6 "CCR4-NOT transcription complex subunit 6"
species:8355 "Xenopus laevis" [GO:2000327 "positive regulation of
ligand-dependent nuclear receptor transcription coactivator
activity" evidence=ISS] InterPro:IPR001611 PROSITE:PS51450
Pfam:PF03372 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0046872 InterPro:IPR003591 SMART:SM00369 GO:GO:0006351
GO:GO:0003723 GO:GO:0004527 GO:GO:0090305 InterPro:IPR005135
SUPFAM:SSF56219 KO:K12603 HOVERGEN:HBG052641 CTD:57472
GO:GO:2000327 EMBL:BC091632 RefSeq:NP_001184194.1 UniGene:Xl.52932
ProteinModelPortal:Q5BJ41 GeneID:100505426 KEGG:xla:100505426
Uniprot:Q5BJ41
Length = 552
Score = 148 (57.2 bits), Expect = 1.9e-14, Sum P(3) = 1.9e-14
Identities = 45/141 (31%), Positives = 70/141 (49%)
Query: 89 RQWTFSSR-DLSKFKDKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMS 147
R W D ++ F V+ YN+L + A + LY P L W+ RKK I +E+
Sbjct: 167 RSWIMLQEPDRTRPTALFSVMCYNVLCDKYATRQ--LYGYCPSWALNWDYRKKAIIQEIL 224
Query: 148 SYNASILCLQEVD---HFDDLDDLLQMDGFRGVY----KARTGDAN-----DGCAIFWKE 195
S NA I+ LQEV+ ++ L+ G+ G + +ART DGCAIF+K
Sbjct: 225 SCNADIISLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKT 284
Query: 196 KLFTLLHQENIEFQNFGLRHN 216
+ FTL+ + +EF + ++
Sbjct: 285 EKFTLVQKHTVEFNQLAMANS 305
Score = 87 (35.7 bits), Expect = 1.9e-14, Sum P(3) = 1.9e-14
Identities = 24/82 (29%), Positives = 43/82 (52%)
Query: 251 NIHVLFNPNRGDIKLGQIRLFLEKAY----KLSQ--------EWGGIPVLLAGDLNSSPN 298
N H+ ++P D+KL Q +FL + K S+ E G IP++L DLNS P+
Sbjct: 354 NAHMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRSLKSSVLGECGTIPLVLCADLNSLPD 413
Query: 299 SALYQFLASSELDVCQHDRRHI 320
S + ++L++ ++ D + +
Sbjct: 414 SGVVEYLSTGGVETNHKDFKEL 435
Score = 65 (27.9 bits), Expect = 1.9e-14, Sum P(3) = 1.9e-14
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 398 TSYHSKFMGTVDYIWHTE-ELVPVRVLETLPVNILRRNG--GLPSERWGSDHLALVCEL 453
T+Y F G +DYI++++ +L + +L L + L N G P SDH +L +L
Sbjct: 475 TNYTFDFKGIIDYIFYSKPQLNTLAILGPLDHHWLVENNISGCPHPLIPSDHFSLFAQL 533
>MGI|MGI:2144529 [details] [associations]
symbol:Cnot6 "CCR4-NOT transcription complex, subunit 6"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0030014 "CCR4-NOT complex"
evidence=ISO] [GO:0043928 "exonucleolytic nuclear-transcribed mRNA
catabolic process involved in deadenylation-dependent decay"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:2000327 "positive regulation of ligand-dependent nuclear
receptor transcription coactivator activity" evidence=ISO]
InterPro:IPR001611 PROSITE:PS51450 Pfam:PF03372 MGI:MGI:2144529
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0046872
eggNOG:COG4886 InterPro:IPR003591 SMART:SM00369 GO:GO:0006351
GO:GO:0003723 GO:GO:0004527 GO:GO:0090305
GeneTree:ENSGT00550000074364 InterPro:IPR005135 SUPFAM:SSF56219
KO:K12603 OMA:YATSDTY HOGENOM:HOG000294222 CleanEx:MM_CCR4
HOVERGEN:HBG052641 OrthoDB:EOG43TZV7 CTD:57472 GO:GO:2000327
EMBL:AY043269 EMBL:AK129307 EMBL:AL606479 EMBL:BC049984
EMBL:BC057190 EMBL:BC062950 IPI:IPI00322541 IPI:IPI00410965
IPI:IPI00410966 RefSeq:NP_997649.1 UniGene:Mm.247113
UniGene:Mm.431753 ProteinModelPortal:Q8K3P5 SMR:Q8K3P5
STRING:Q8K3P5 PhosphoSite:Q8K3P5 PRIDE:Q8K3P5 DNASU:104625
Ensembl:ENSMUST00000020624 Ensembl:ENSMUST00000145353 GeneID:104625
KEGG:mmu:104625 UCSC:uc007iqy.1 UCSC:uc007iqz.1 UCSC:uc007ira.1
InParanoid:Q8K3P5 NextBio:357192 Bgee:Q8K3P5 CleanEx:MM_CNOT6
Genevestigator:Q8K3P5 GermOnline:ENSMUSG00000020362 Uniprot:Q8K3P5
Length = 557
Score = 148 (57.2 bits), Expect = 1.9e-14, Sum P(3) = 1.9e-14
Identities = 45/141 (31%), Positives = 70/141 (49%)
Query: 89 RQWTFSSR-DLSKFKDKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMS 147
R W D ++ F V+ YN+L + A + LY P L W+ RKK I +E+
Sbjct: 172 RSWIMLQEPDRTRPTALFSVMCYNVLCDKYATRQ--LYGYCPSWALNWDYRKKAIIQEIL 229
Query: 148 SYNASILCLQEVD---HFDDLDDLLQMDGFRGVY----KARTGDAN-----DGCAIFWKE 195
S NA I+ LQEV+ ++ L+ G+ G + +ART DGCAIF+K
Sbjct: 230 SCNADIISLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKT 289
Query: 196 KLFTLLHQENIEFQNFGLRHN 216
+ FTL+ + +EF + ++
Sbjct: 290 EKFTLVQKHTVEFNQLAMANS 310
Score = 87 (35.7 bits), Expect = 1.9e-14, Sum P(3) = 1.9e-14
Identities = 24/82 (29%), Positives = 43/82 (52%)
Query: 251 NIHVLFNPNRGDIKLGQIRLFLEKAY----KLSQ--------EWGGIPVLLAGDLNSSPN 298
N H+ ++P D+KL Q +FL + K S+ E G IP++L DLNS P+
Sbjct: 359 NAHMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRSLKSSVLGECGTIPLVLCADLNSLPD 418
Query: 299 SALYQFLASSELDVCQHDRRHI 320
S + ++L++ ++ D + +
Sbjct: 419 SGVVEYLSTGGVETNHKDFKEL 440
Score = 65 (27.9 bits), Expect = 1.9e-14, Sum P(3) = 1.9e-14
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 398 TSYHSKFMGTVDYIWHTE-ELVPVRVLETLPVNILRRNG--GLPSERWGSDHLALVCEL 453
T+Y F G +DYI++++ +L + +L L + L N G P SDH +L +L
Sbjct: 480 TNYTFDFKGIIDYIFYSKPQLNTLAILGPLDHHWLVENNISGCPHPLIPSDHFSLFAQL 538
>RGD|1310783 [details] [associations]
symbol:Cnot6 "CCR4-NOT transcription complex, subunit 6"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0030014 "CCR4-NOT complex"
evidence=ISO] [GO:0043928 "exonucleolytic nuclear-transcribed mRNA
catabolic process involved in deadenylation-dependent decay"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:2000327 "positive regulation of ligand-dependent nuclear
receptor transcription coactivator activity" evidence=ISO;ISS]
InterPro:IPR001611 PROSITE:PS51450 Pfam:PF03372 RGD:1310783
GO:GO:0005634 GO:GO:0005737 GO:GO:0006355 GO:GO:0046872
eggNOG:COG4886 InterPro:IPR003591 SMART:SM00369 GO:GO:0006351
GO:GO:0003723 GO:GO:0004527 GO:GO:0090305 InterPro:IPR005135
SUPFAM:SSF56219 KO:K12603 HOGENOM:HOG000294222 HOVERGEN:HBG052641
OrthoDB:EOG43TZV7 CTD:57472 GO:GO:2000327 EMBL:BC079308
IPI:IPI00464576 RefSeq:NP_001013878.1 UniGene:Rn.93562
ProteinModelPortal:Q6AXU9 SMR:Q6AXU9 STRING:Q6AXU9
PhosphoSite:Q6AXU9 PRIDE:Q6AXU9 GeneID:287249 KEGG:rno:287249
UCSC:RGD:1310783 NextBio:625750 ArrayExpress:Q6AXU9
Genevestigator:Q6AXU9 GermOnline:ENSRNOG00000002803 Uniprot:Q6AXU9
Length = 557
Score = 148 (57.2 bits), Expect = 1.9e-14, Sum P(3) = 1.9e-14
Identities = 45/141 (31%), Positives = 70/141 (49%)
Query: 89 RQWTFSSR-DLSKFKDKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMS 147
R W D ++ F V+ YN+L + A + LY P L W+ RKK I +E+
Sbjct: 172 RSWIMLQEPDRTRPTALFSVMCYNVLCDKYATRQ--LYGYCPSWALNWDYRKKAIIQEIL 229
Query: 148 SYNASILCLQEVD---HFDDLDDLLQMDGFRGVY----KARTGDAN-----DGCAIFWKE 195
S NA I+ LQEV+ ++ L+ G+ G + +ART DGCAIF+K
Sbjct: 230 SCNADIISLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTMSEQERKHVDGCAIFFKT 289
Query: 196 KLFTLLHQENIEFQNFGLRHN 216
+ FTL+ + +EF + ++
Sbjct: 290 EKFTLVQKHTVEFNQLAMANS 310
Score = 87 (35.7 bits), Expect = 1.9e-14, Sum P(3) = 1.9e-14
Identities = 24/82 (29%), Positives = 43/82 (52%)
Query: 251 NIHVLFNPNRGDIKLGQIRLFLEKAY----KLSQ--------EWGGIPVLLAGDLNSSPN 298
N H+ ++P D+KL Q +FL + K S+ E G IP++L DLNS P+
Sbjct: 359 NAHMHWDPEYSDVKLVQTMMFLSEVKNIIDKASRSLKSSVLGECGTIPLVLCADLNSLPD 418
Query: 299 SALYQFLASSELDVCQHDRRHI 320
S + ++L++ ++ D + +
Sbjct: 419 SGVVEYLSTGGVETNHKDFKEL 440
Score = 65 (27.9 bits), Expect = 1.9e-14, Sum P(3) = 1.9e-14
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 398 TSYHSKFMGTVDYIWHTE-ELVPVRVLETLPVNILRRNG--GLPSERWGSDHLALVCEL 453
T+Y F G +DYI++++ +L + +L L + L N G P SDH +L +L
Sbjct: 480 TNYTFDFKGIIDYIFYSKPQLNTLAILGPLDHHWLVENNISGCPHPLIPSDHFSLFAQL 538
>UNIPROTKB|E1BE73 [details] [associations]
symbol:LOC100849029 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0061157 "mRNA destabilization" evidence=IEA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0004535
"poly(A)-specific ribonuclease activity" evidence=IEA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IEA] Pfam:PF03372
GO:GO:0005737 GO:GO:0008284 GeneTree:ENSGT00550000074364
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0000288 GO:GO:0004535
OMA:YMLDNLA GO:GO:0061157 EMBL:DAAA02018160 IPI:IPI00694976
Ensembl:ENSBTAT00000005694 Uniprot:E1BE73
Length = 422
Score = 151 (58.2 bits), Expect = 2.3e-14, Sum P(3) = 2.3e-14
Identities = 47/141 (33%), Positives = 70/141 (49%)
Query: 89 RQW-TFSSRDLSKFKDKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMS 147
R W T RD F V+ YN+L + A + LY P L WE RKK I EE+
Sbjct: 39 RPWITLKERDQILPSASFTVMCYNVLCDKYATRQ--LYGYCPSWALNWEYRKKGIMEEIV 96
Query: 148 SYNASILCLQEVD---HFDDLDDLLQMDGFRGVY--KARTGDAN-------DGCAIFWKE 195
+ +A I+ LQEV+ +F L+ G+ G + K+R + DGCAIF+K
Sbjct: 97 NCDADIISLQEVETEQYFTLFLPALKERGYDGFFSPKSRAKIMSEQERKHVDGCAIFFKT 156
Query: 196 KLFTLLHQENIEFQNFGLRHN 216
+ FTL+ + +EF + ++
Sbjct: 157 EKFTLVQKHTVEFNQVAMANS 177
Score = 77 (32.2 bits), Expect = 2.3e-14, Sum P(3) = 2.3e-14
Identities = 22/68 (32%), Positives = 37/68 (54%)
Query: 251 NIHVLFNPNRGDIKLGQIRLF-------LEKAYKL----SQEWGGIPVLLAGDLNSSPNS 299
N H+ ++P D+KL Q +F LEKA + + IP++L DLNS P+S
Sbjct: 225 NAHMHWDPEYSDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNSLPDS 284
Query: 300 ALYQFLAS 307
+ ++L++
Sbjct: 285 GVVEYLSN 292
Score = 65 (27.9 bits), Expect = 2.3e-14, Sum P(3) = 2.3e-14
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 398 TSYHSKFMGTVDYIWHTEELVPVR-VLETLPVNILRRNG--GLPSERWGSDHLALVCEL 453
T+Y F G +DYI++++ + V VL L L N G P SDH +L+ +L
Sbjct: 345 TNYTFDFKGVIDYIFYSKTHMNVLGVLGPLDPQWLVENNITGCPHPHIPSDHFSLLTQL 403
Score = 38 (18.4 bits), Expect = 2.0e-07, Sum P(2) = 2.0e-07
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 388 TRDNLGEPLATSYHSKFMG 406
T+DN+G + H + G
Sbjct: 189 TKDNIGVAVVLEVHKELFG 207
>ASPGD|ASPL0000009331 [details] [associations]
symbol:ccr4 species:162425 "Emericella nidulans"
[GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IMP] [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR001611 PROSITE:PS51450 Pfam:PF03372 GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0046872 eggNOG:COG4886
GO:GO:0006351 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000061
GO:GO:0090305 InterPro:IPR025875 Pfam:PF12799 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0004535 KO:K12603 RefSeq:XP_661206.1
ProteinModelPortal:Q5B778 STRING:Q5B778
EnsemblFungi:CADANIAT00005142 GeneID:2873021 KEGG:ani:AN3602.2
HOGENOM:HOG000294222 OMA:CLQEIDQ OrthoDB:EOG4Z39P3 Uniprot:Q5B778
Length = 675
Score = 145 (56.1 bits), Expect = 3.6e-14, Sum P(2) = 3.6e-14
Identities = 43/138 (31%), Positives = 67/138 (48%)
Query: 89 RQWTFSSRDLSKFKDKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSS 148
R W + DK V+SYN L +A + Y P + L WE R++ I E+ +
Sbjct: 293 RDWLVLDETAATSPDKVSVLSYNTLCDSSATQSH--YGYAPSRVLSWEFRRETILNELRA 350
Query: 149 YNASILCLQEVDH--FDDL-DDLLQMDGFRGVYKAR---TG----DAN--DGCAIFWKEK 196
++ I+CLQE+D +++ + L ++GV+ R G DA DGCA F+K
Sbjct: 351 HDPDIICLQEIDQGSYNEFFREQLAYSDYKGVFWPRGRAMGMQEEDAKGVDGCATFFKGS 410
Query: 197 LFTLLHQENIEFQNFGLR 214
F LL ++ I F +R
Sbjct: 411 KFILLDKQVINFGQTAVR 428
Score = 116 (45.9 bits), Expect = 3.6e-14, Sum P(2) = 3.6e-14
Identities = 53/211 (25%), Positives = 95/211 (45%)
Query: 251 NIHVLFNPNRGDIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSPNSALYQFL-ASSE 309
N H+ ++P D+KL Q + +E+ K S+++ P + A ++F A E
Sbjct: 467 NAHLYWDPAFKDVKLIQTAILMEEITKHSEKYAKWP--------PCTDKAAFRFREAQGE 518
Query: 310 LDVCQH--DRRHISGQ---FAKCRDIDFQKRNSTSDWISISRPLLYQWTDVELRLATGCE 364
+ + + SG C D + ++ + I+ + L+ + D+E R+
Sbjct: 519 QTMPEPAPSAEYASGDQIPLFMCGDFNSSPGSAAYNLIA-NGGLIEEHPDLEKRMYGNLS 577
Query: 365 GVTELQHQLNLCSAYFGIPGSHRTRDNLGEPLATSYHSKFMGTVDYIWHTEELVPVR-VL 423
V + H L SAY G+ +GE T+Y F +DYIW++ V V +L
Sbjct: 578 KVG-MTHPFKLKSAY----GA------IGELSFTNYTPDFKDILDYIWYSSNTVHVSGLL 626
Query: 424 ETLPVNILRRNGGLPSERWGSDHLALVCELA 454
+ + L+R G P+ + SDH+AL+ E +
Sbjct: 627 GEVDKDYLQRVPGFPNYHFPSDHIALLAEFS 657
>RGD|1309128 [details] [associations]
symbol:Cnot6l "CCR4-NOT transcription complex, subunit 6-like"
species:10116 "Rattus norvegicus" [GO:0000288 "nuclear-transcribed
mRNA catabolic process, deadenylation-dependent decay"
evidence=IEA;ISO] [GO:0004535 "poly(A)-specific ribonuclease
activity" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA;ISO] [GO:0030014 "CCR4-NOT complex"
evidence=ISO] [GO:0061157 "mRNA destabilization" evidence=IEA;ISO]
InterPro:IPR001611 PROSITE:PS51450 Pfam:PF03372 RGD:1309128
GO:GO:0005737 GO:GO:0008284 GeneTree:ENSGT00550000074364
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0000288 GO:GO:0004535
GO:GO:0061157 IPI:IPI00363898 Ensembl:ENSRNOT00000002843
Uniprot:F1M642
Length = 553
Score = 154 (59.3 bits), Expect = 4.0e-14, Sum P(3) = 4.0e-14
Identities = 47/141 (33%), Positives = 71/141 (50%)
Query: 89 RQW-TFSSRDLSKFKDKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMS 147
R W T RD F V+ YN+L + A + LY P L WE RKK I EE+
Sbjct: 170 RPWITLKERDQILPSASFTVMCYNVLCDKYATRQ--LYGYCPSWALNWEYRKKGIMEEIV 227
Query: 148 SYNASILCLQEVD---HFDDLDDLLQMDGFRGVY--KARTGDAN-------DGCAIFWKE 195
+++A I+ LQEV+ +F L+ G+ G + K+R + DGCAIF+K
Sbjct: 228 NWDADIISLQEVETEQYFTLFLPALKDRGYDGFFSPKSRAKIMSEQERKHVDGCAIFFKT 287
Query: 196 KLFTLLHQENIEFQNFGLRHN 216
+ FTL+ + +EF + ++
Sbjct: 288 EKFTLVQKHTVEFNQVAMANS 308
Score = 77 (32.2 bits), Expect = 4.0e-14, Sum P(3) = 4.0e-14
Identities = 22/68 (32%), Positives = 37/68 (54%)
Query: 251 NIHVLFNPNRGDIKLGQIRLF-------LEKAYKL----SQEWGGIPVLLAGDLNSSPNS 299
N H+ ++P D+KL Q +F LEKA + + IP++L DLNS P+S
Sbjct: 356 NAHMHWDPEYSDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNSLPDS 415
Query: 300 ALYQFLAS 307
+ ++L++
Sbjct: 416 GVVEYLSN 423
Score = 65 (27.9 bits), Expect = 4.0e-14, Sum P(3) = 4.0e-14
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 398 TSYHSKFMGTVDYIWHTEELVPVR-VLETLPVNILRRNG--GLPSERWGSDHLALVCEL 453
T+Y F G +DYI++++ + V VL L L N G P SDH +L+ +L
Sbjct: 476 TNYTFDFKGVIDYIFYSKTHMNVLGVLGPLDPQWLVENNITGCPHPHIPSDHFSLLTQL 534
Score = 43 (20.2 bits), Expect = 6.9e-08, Sum P(2) = 6.9e-08
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 388 TRDNLGEPLATSYHSKFMGT 407
T+DN+G + H + GT
Sbjct: 320 TKDNIGVAVVLEVHKELFGT 339
>MGI|MGI:2443154 [details] [associations]
symbol:Cnot6l "CCR4-NOT transcription complex, subunit
6-like" species:10090 "Mus musculus" [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IMP] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0004535 "poly(A)-specific ribonuclease activity"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0030014 "CCR4-NOT complex" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0061157 "mRNA
destabilization" evidence=IMP] InterPro:IPR001611 PROSITE:PS51450
Pfam:PF03372 MGI:MGI:2443154 GO:GO:0005737 GO:GO:0046872
GO:GO:0008284 GO:GO:0006397 eggNOG:COG4886
GeneTree:ENSGT00550000074364 InterPro:IPR005135 SUPFAM:SSF56219
GO:GO:0000288 GO:GO:0004535 KO:K12603 HOGENOM:HOG000294222
CTD:246175 HOVERGEN:HBG052641 OMA:YMLDNLA GO:GO:0061157
EMBL:AK030112 EMBL:AK151728 EMBL:AC129600 EMBL:AC149285
EMBL:BC018506 IPI:IPI00124574 IPI:IPI00828817 IPI:IPI00881655
RefSeq:NP_659159.1 RefSeq:NP_849185.2 UniGene:Mm.28374
UniGene:Mm.384746 HSSP:P24014 ProteinModelPortal:Q8VEG6 SMR:Q8VEG6
DIP:DIP-46842N IntAct:Q8VEG6 STRING:Q8VEG6 PhosphoSite:Q8VEG6
PRIDE:Q8VEG6 Ensembl:ENSMUST00000113005 Ensembl:ENSMUST00000122003
Ensembl:ENSMUST00000155901 GeneID:231464 KEGG:mmu:231464
UCSC:uc008yfd.1 UCSC:uc008yfe.1 UCSC:uc008yfg.1 InParanoid:Q8VEG6
NextBio:380566 Bgee:Q8VEG6 CleanEx:MM_CNOT6L Genevestigator:Q8VEG6
Uniprot:Q8VEG6
Length = 555
Score = 154 (59.3 bits), Expect = 4.1e-14, Sum P(3) = 4.1e-14
Identities = 47/141 (33%), Positives = 71/141 (50%)
Query: 89 RQW-TFSSRDLSKFKDKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMS 147
R W T RD F V+ YN+L + A + LY P L WE RKK I EE+
Sbjct: 172 RPWITLKERDQILPSASFTVMCYNVLCDKYATRQ--LYGYCPSWALNWEYRKKGIMEEIV 229
Query: 148 SYNASILCLQEVD---HFDDLDDLLQMDGFRGVY--KARTGDAN-------DGCAIFWKE 195
+++A I+ LQEV+ +F L+ G+ G + K+R + DGCAIF+K
Sbjct: 230 NWDADIISLQEVETEQYFTLFLPALKDRGYDGFFSPKSRAKIMSEQERKHVDGCAIFFKT 289
Query: 196 KLFTLLHQENIEFQNFGLRHN 216
+ FTL+ + +EF + ++
Sbjct: 290 EKFTLVQKHTVEFNQVAMANS 310
Score = 77 (32.2 bits), Expect = 4.1e-14, Sum P(3) = 4.1e-14
Identities = 22/68 (32%), Positives = 37/68 (54%)
Query: 251 NIHVLFNPNRGDIKLGQIRLF-------LEKAYKL----SQEWGGIPVLLAGDLNSSPNS 299
N H+ ++P D+KL Q +F LEKA + + IP++L DLNS P+S
Sbjct: 358 NAHMHWDPEYSDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNSLPDS 417
Query: 300 ALYQFLAS 307
+ ++L++
Sbjct: 418 GVVEYLSN 425
Score = 65 (27.9 bits), Expect = 4.1e-14, Sum P(3) = 4.1e-14
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 398 TSYHSKFMGTVDYIWHTEELVPVR-VLETLPVNILRRNG--GLPSERWGSDHLALVCEL 453
T+Y F G +DYI++++ + V VL L L N G P SDH +L+ +L
Sbjct: 478 TNYTFDFKGVIDYIFYSKTHMNVLGVLGPLDPQWLVENNITGCPHPHIPSDHFSLLTQL 536
Score = 43 (20.2 bits), Expect = 7.0e-08, Sum P(2) = 7.0e-08
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 388 TRDNLGEPLATSYHSKFMGT 407
T+DN+G + H + GT
Sbjct: 322 TKDNIGVAVVLEVHKELFGT 341
>WB|WBGene00000376 [details] [associations]
symbol:ccr-4 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040018 "positive regulation of multicellular
organism growth" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0040002 "collagen and cuticulin-based cuticle
development" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0008340 "determination of adult lifespan" evidence=IMP]
Pfam:PF03372 GO:GO:0008340 GO:GO:0009792 GO:GO:0040011
GO:GO:0040018 GO:GO:0000003 eggNOG:COG5239
GeneTree:ENSGT00550000074364 InterPro:IPR005135 SUPFAM:SSF56219
GO:GO:0040002 KO:K12603 EMBL:Z68753 RefSeq:NP_001129877.1
UniGene:Cel.6023 ProteinModelPortal:B3GWC3 SMR:B3GWC3 STRING:B3GWC3
PaxDb:B3GWC3 EnsemblMetazoa:ZC518.3d GeneID:178184
KEGG:cel:CELE_ZC518.3 CTD:178184 WormBase:ZC518.3d
InParanoid:B3GWC3 NextBio:900070 ArrayExpress:B3GWC3 Uniprot:B3GWC3
Length = 677
Score = 143 (55.4 bits), Expect = 5.1e-14, Sum P(3) = 5.1e-14
Identities = 42/123 (34%), Positives = 65/123 (52%)
Query: 105 FVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVD--HF 162
F V+ YN+L + A + Y P L WE RK LI +E+ +Y A ++ LQEV+ F
Sbjct: 291 FTVLCYNVLCDKYATVNQ--YSYCPSWALNWEYRKGLIIKEIRTYEADVITLQEVETEQF 348
Query: 163 DDL--DDLLQMDGFRGVYKART-----GDAN----DGCAIFWKEKLFTLLHQENIEFQNF 211
L +L Q+ G+ G+++A++ G+ DGCAIFWK F + Q EF +
Sbjct: 349 RTLFQPELKQL-GYAGIFEAKSRAKTMGEEERKYVDGCAIFWKVDKFDMDKQYLFEFSSV 407
Query: 212 GLR 214
++
Sbjct: 408 AMK 410
Score = 94 (38.1 bits), Expect = 5.1e-14, Sum P(3) = 5.1e-14
Identities = 31/106 (29%), Positives = 57/106 (53%)
Query: 253 HVLFNPNRGDIKLGQIRLF-------LE---KAYKLSQEWGGIPVLLAGDLNSSPNSALY 302
H+ ++P D+KL Q + LE K Y+++Q+ +PVL+ GD NS P+S ++
Sbjct: 468 HIHWDPEFCDVKLVQSMMLTHEVSRVLEEVSKKYQITQQQ--VPVLICGDFNSLPDSGVF 525
Query: 303 QFLASSELDVCQHDRRHISGQFAKCRDIDFQKRNSTSDWISISRPL 348
++L+ ++ RRH+ + + D +K +++D IS PL
Sbjct: 526 EYLSKGQIT-----RRHMDLKSFR-DDSCLEKFTNSTDKNVISHPL 565
Score = 63 (27.2 bits), Expect = 5.1e-14, Sum P(3) = 5.1e-14
Identities = 17/60 (28%), Positives = 29/60 (48%)
Query: 398 TSYHSKFMGTVDYIWHT-EELVPVRVLETLPVNILRRNG--GLPSERWGSDHLALVCELA 454
T+Y F G +DYI+ T + L + +L ++ N G P SDH+ ++ + A
Sbjct: 579 TNYTLDFKGMIDYIFATPQSLARLGILGPFDPQWVQSNKILGFPHPHVASDHIPIMAQYA 638
>UNIPROTKB|Q96LI5 [details] [associations]
symbol:CNOT6L "CCR4-NOT transcription complex subunit
6-like" species:9606 "Homo sapiens" [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0061157 "mRNA destabilization"
evidence=IEA] [GO:0030014 "CCR4-NOT complex" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0004535 "poly(A)-specific ribonuclease activity" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR001611
PROSITE:PS51450 Pfam:PF03372 GO:GO:0005829 GO:GO:0046872
GO:GO:0008284 eggNOG:COG4886 InterPro:IPR005135 SUPFAM:SSF56219
GO:GO:0004535 GO:GO:0000289 KO:K12603 HOGENOM:HOG000294222
CTD:246175 HOVERGEN:HBG052641 EMBL:AK058188 EMBL:AC104701
EMBL:AL133112 IPI:IPI00164061 IPI:IPI00878418 PIR:T42705
RefSeq:NP_653172.2 UniGene:Hs.592519 PDB:3NGN PDB:3NGO PDB:3NGQ
PDBsum:3NGN PDBsum:3NGO PDBsum:3NGQ ProteinModelPortal:Q96LI5
SMR:Q96LI5 DIP:DIP-46837N IntAct:Q96LI5 STRING:Q96LI5
PhosphoSite:Q96LI5 DMDM:166216089 PRIDE:Q96LI5 DNASU:246175
Ensembl:ENST00000264903 Ensembl:ENST00000504123 GeneID:246175
KEGG:hsa:246175 UCSC:uc003hks.3 UCSC:uc003hkt.1
GeneCards:GC04M078634 HGNC:HGNC:18042 HPA:HPA042688
neXtProt:NX_Q96LI5 PharmGKB:PA38480 InParanoid:Q96LI5
EvolutionaryTrace:Q96LI5 GenomeRNAi:246175 NextBio:91870
ArrayExpress:Q96LI5 Bgee:Q96LI5 CleanEx:HS_CNOT6L
Genevestigator:Q96LI5 GO:GO:0061157 Uniprot:Q96LI5
Length = 555
Score = 151 (58.2 bits), Expect = 9.0e-14, Sum P(3) = 9.0e-14
Identities = 47/141 (33%), Positives = 70/141 (49%)
Query: 89 RQW-TFSSRDLSKFKDKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMS 147
R W T RD F V+ YN+L + A + LY P L WE RKK I EE+
Sbjct: 172 RPWITLKERDQILPSASFTVMCYNVLCDKYATRQ--LYGYCPSWALNWEYRKKGIMEEIV 229
Query: 148 SYNASILCLQEVD---HFDDLDDLLQMDGFRGVY--KARTGDAN-------DGCAIFWKE 195
+ +A I+ LQEV+ +F L+ G+ G + K+R + DGCAIF+K
Sbjct: 230 NCDADIISLQEVETEQYFTLFLPALKERGYDGFFSPKSRAKIMSEQERKHVDGCAIFFKT 289
Query: 196 KLFTLLHQENIEFQNFGLRHN 216
+ FTL+ + +EF + ++
Sbjct: 290 EKFTLVQKHTVEFNQVAMANS 310
Score = 77 (32.2 bits), Expect = 9.0e-14, Sum P(3) = 9.0e-14
Identities = 22/68 (32%), Positives = 37/68 (54%)
Query: 251 NIHVLFNPNRGDIKLGQIRLF-------LEKAYKL----SQEWGGIPVLLAGDLNSSPNS 299
N H+ ++P D+KL Q +F LEKA + + IP++L DLNS P+S
Sbjct: 358 NAHMHWDPEYSDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNSLPDS 417
Query: 300 ALYQFLAS 307
+ ++L++
Sbjct: 418 GVVEYLSN 425
Score = 65 (27.9 bits), Expect = 9.0e-14, Sum P(3) = 9.0e-14
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 398 TSYHSKFMGTVDYIWHTEELVPVR-VLETLPVNILRRNG--GLPSERWGSDHLALVCEL 453
T+Y F G +DYI++++ + V VL L L N G P SDH +L+ +L
Sbjct: 478 TNYTFDFKGVIDYIFYSKTHMNVLGVLGPLDPQWLVENNITGCPHPHIPSDHFSLLTQL 536
Score = 38 (18.4 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 388 TRDNLGEPLATSYHSKFMG 406
T+DN+G + H + G
Sbjct: 322 TKDNIGVAVVLEVHKELFG 340
>ZFIN|ZDB-GENE-050522-302 [details] [associations]
symbol:cnot6l "CCR4-NOT transcription complex,
subunit 6-like" species:7955 "Danio rerio" [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
InterPro:IPR001611 PROSITE:PS51450 Pfam:PF03372
ZFIN:ZDB-GENE-050522-302 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
eggNOG:COG4886 GO:GO:0004527 GO:GO:0090305 InterPro:IPR025875
Pfam:PF12799 GeneTree:ENSGT00550000074364 InterPro:IPR005135
SUPFAM:SSF56219 KO:K12603 HOGENOM:HOG000294222 EMBL:BX640512
EMBL:BC095634 IPI:IPI00487742 RefSeq:NP_001018474.1
UniGene:Dr.76067 ProteinModelPortal:A2BHJ4 STRING:A2BHJ4
Ensembl:ENSDART00000076807 GeneID:553665 KEGG:dre:553665 CTD:246175
HOVERGEN:HBG052641 OMA:YMLDNLA OrthoDB:EOG43TZV7 NextBio:20880398
Bgee:A2BHJ4 Uniprot:A2BHJ4
Length = 559
Score = 142 (55.0 bits), Expect = 1.2e-13, Sum P(3) = 1.2e-13
Identities = 43/141 (30%), Positives = 70/141 (49%)
Query: 89 RQW-TFSSRDLSKFKDKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMS 147
R W T RD F V+ YN+L + A + LY P L WE RKK I EE++
Sbjct: 167 RPWITLRERDQMMPTAVFTVMCYNVLCDKYATRQ--LYGYCPSWALNWEYRKKGIMEEIT 224
Query: 148 SYNASILCLQEVD---HFDDLDDLLQMDGFRGVY--KARTGDAN-------DGCAIFWKE 195
+ +A I+ LQEV+ ++ + L+ G+ G + K+R + DGC +F+K
Sbjct: 225 NCDADIISLQEVETEQYYTFFLETLKDRGYDGFFCPKSRAKLVSEQERKHVDGCGVFFKT 284
Query: 196 KLFTLLHQENIEFQNFGLRHN 216
+ F L+ + +EF + ++
Sbjct: 285 EKFALVQKHTVEFNQVAMANS 305
Score = 80 (33.2 bits), Expect = 1.2e-13, Sum P(3) = 1.2e-13
Identities = 20/70 (28%), Positives = 37/70 (52%)
Query: 251 NIHVLFNPNRGDIKLGQIRLFLEKAYKLSQEWGG-------------IPVLLAGDLNSSP 297
N H+ ++P D+KL Q +FL + +++ G IP++L DLNS P
Sbjct: 351 NAHMHWDPEYSDVKLIQTMMFLSELKSIAERASGSINSSSPTSETSSIPIVLCADLNSLP 410
Query: 298 NSALYQFLAS 307
+S + ++L++
Sbjct: 411 DSGVVEYLSN 420
Score = 71 (30.1 bits), Expect = 1.2e-13, Sum P(3) = 1.2e-13
Identities = 20/61 (32%), Positives = 31/61 (50%)
Query: 398 TSYHSKFMGTVDYIWHTEELVPVR-VLETLPVNILRRNG--GLPSERWGSDHLALVCELA 454
T+Y F G +DYI+ ++ + V VL L L+ N G P SDH +L+ +L
Sbjct: 473 TNYTYDFKGVIDYIFFSKTHMSVLGVLGPLETQWLKDNNITGCPHPHIPSDHFSLLAQLE 532
Query: 455 F 455
+
Sbjct: 533 Y 533
>UNIPROTKB|E1C5L3 [details] [associations]
symbol:CNOT6L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=IEA] [GO:0004535
"poly(A)-specific ribonuclease activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0061157 "mRNA destabilization"
evidence=IEA] InterPro:IPR001611 PROSITE:PS51450 Pfam:PF03372
GO:GO:0005737 GO:GO:0008284 GeneTree:ENSGT00550000074364
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0000288 GO:GO:0004535
OMA:YMLDNLA GO:GO:0061157 EMBL:AADN02016133 IPI:IPI00594662
Ensembl:ENSGALT00000016820 NextBio:20825132 Uniprot:E1C5L3
Length = 549
Score = 150 (57.9 bits), Expect = 1.4e-13, Sum P(3) = 1.4e-13
Identities = 47/141 (33%), Positives = 70/141 (49%)
Query: 89 RQW-TFSSRDLSKFKDKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMS 147
R W T RD F V+ YN+L + A + LY P L WE RKK I EE+
Sbjct: 167 RPWITLKERDQILPSASFTVMCYNVLCDKYATRQ--LYGYCPSWALNWEYRKKGIMEEIV 224
Query: 148 SYNASILCLQEVD---HFDDLDDLLQMDGFRGVY--KARTGDAN-------DGCAIFWKE 195
S +A I+ LQEV+ +F L+ G+ G + K+R + DGCAIF+K
Sbjct: 225 SCDADIISLQEVETEQYFTLFLPALKERGYDGFFSPKSRAKIMSEQEKKHVDGCAIFFKT 284
Query: 196 KLFTLLHQENIEFQNFGLRHN 216
+ F+L+ + +EF + ++
Sbjct: 285 EKFSLVQKHTVEFNQVAMANS 305
Score = 77 (32.2 bits), Expect = 1.4e-13, Sum P(3) = 1.4e-13
Identities = 22/68 (32%), Positives = 37/68 (54%)
Query: 251 NIHVLFNPNRGDIKLGQIRLF-------LEKAYKL----SQEWGGIPVLLAGDLNSSPNS 299
N H+ ++P D+KL Q +F LEKA + + IP++L DLNS P+S
Sbjct: 352 NAHMHWDPEYSDVKLIQTMMFVSELKNILEKASSRPGSPTADPNSIPLVLCADLNSLPDS 411
Query: 300 ALYQFLAS 307
+ ++L++
Sbjct: 412 GVVEYLSN 419
Score = 64 (27.6 bits), Expect = 1.4e-13, Sum P(3) = 1.4e-13
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 398 TSYHSKFMGTVDYIWHTEELVPVR-VLETLPVNILRRNG--GLPSERWGSDHLALVCEL 453
T+Y F G +DYI+++ + V VL L L N G P SDH +L+ +L
Sbjct: 472 TNYTFDFKGVIDYIFYSNTHMNVLGVLGPLDPQWLVENNITGCPHPHIPSDHFSLLTQL 530
Score = 38 (18.4 bits), Expect = 6.1e-07, Sum P(2) = 6.1e-07
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 388 TRDNLGEPLATSYHSKFMG 406
T+DN+G + H + G
Sbjct: 317 TKDNIGVAVVLEVHKELFG 335
>SGD|S000000019 [details] [associations]
symbol:CCR4 "Component of the CCR4-NOT transcriptional
complex" species:4932 "Saccharomyces cerevisiae" [GO:0030015
"CCR4-NOT core complex" evidence=IPI] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IDA;IPI] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000289 "nuclear-transcribed mRNA poly(A)
tail shortening" evidence=IMP;IDA] [GO:0000288 "nuclear-transcribed
mRNA catabolic process, deadenylation-dependent decay"
evidence=IGI;IMP;IDA] [GO:0007089 "traversing start control point
of mitotic cell cycle" evidence=IMP] [GO:0016593 "Cdc73/Paf1
complex" evidence=IPI] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=IGI;IMP] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0004535 "poly(A)-specific ribonuclease activity"
evidence=IEA] [GO:0048478 "replication fork protection"
evidence=IGI] [GO:0006260 "DNA replication" evidence=IGI]
[GO:0000076 "DNA replication checkpoint" evidence=IGI] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IDA] [GO:0000175
"3'-5'-exoribonuclease activity" evidence=IGI;IMP;IDA] [GO:0090305
"nucleic acid phosphodiester bond hydrolysis" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IPI] InterPro:IPR001611 PROSITE:PS51450
SGD:S000000019 Pfam:PF03372 GO:GO:0005634 EMBL:L05146 EMBL:BK006935
GO:GO:0046872 eggNOG:COG4886 InterPro:IPR003591 SMART:SM00369
GO:GO:0003723 GO:GO:0006368 GO:GO:0000932 InterPro:IPR025875
Pfam:PF12799 GeneTree:ENSGT00550000074364 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0048478 GO:GO:0032968 GO:GO:0004535
GO:GO:0000289 GO:GO:0030015 GO:GO:0007089 KO:K12603
HOGENOM:HOG000294222 OrthoDB:EOG4Z39P3 EMBL:S50459 PIR:S36713
RefSeq:NP_009381.1 PDB:4B8C PDBsum:4B8C ProteinModelPortal:P31384
SMR:P31384 DIP:DIP-2522N IntAct:P31384 MINT:MINT-615079
STRING:P31384 PaxDb:P31384 PeptideAtlas:P31384 EnsemblFungi:YAL021C
GeneID:851212 KEGG:sce:YAL021C OMA:CMQEVET NextBio:968091
Genevestigator:P31384 GermOnline:YAL021C GO:GO:0000175
GO:GO:0000076 Uniprot:P31384
Length = 837
Score = 164 (62.8 bits), Expect = 3.9e-13, Sum P(2) = 3.9e-13
Identities = 52/194 (26%), Positives = 89/194 (45%)
Query: 102 KDKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDH 161
K F V+SYN L A P +Y P L W+ R+ ++E++ SY++ +LCLQEV+
Sbjct: 502 KRTFTVLSYNTLCQHYAT--PKMYRYTPSWALSWDYRRNKLKEQILSYDSDLLCLQEVES 559
Query: 162 --FDDL-DDLLQMDGFRGVY--KAR-----TGDAN--DGCAIFWKEKLFTLLHQENIEFQ 209
F++ LL G+ G++ KAR + D+ DGC IF+K F L+ ++ ++F
Sbjct: 560 KTFEEYWVPLLDKHGYTGIFHAKARAKTMHSKDSKKVDGCCIFFKRDQFKLITKDAMDFS 619
Query: 210 NFGLRHNVAQLCVLKMNXXXXXXXXXXXXXXXXXXXXXXXGNI--HVLFNPNRGDIKLGQ 267
++H Q +N + H+ ++P D+K Q
Sbjct: 620 GAWMKHKKFQRTEDYLNRAMNKDNVALFLKLQHIPSGDTIWAVTTHLHWDPKFNDVKTFQ 679
Query: 268 IRLFLEKAYKLSQE 281
+ + L+ L +E
Sbjct: 680 VGVLLDHLETLLKE 693
Score = 106 (42.4 bits), Expect = 9.5e-07, Sum P(2) = 9.5e-07
Identities = 32/139 (23%), Positives = 58/139 (41%)
Query: 187 DGCAIFWKEKLFTLLHQENIEFQNFGLRHNVAQLCVLKMNXXXXXXXXXXXXXXXXXXXX 246
DGC IF+K F L+ ++ ++F ++H Q +N
Sbjct: 597 DGCCIFFKRDQFKLITKDAMDFSGAWMKHKKFQRTEDYLNRAMNKDNVALFLKLQHIPSG 656
Query: 247 XXXGNI--HVLFNPNRGDIKLGQIRLFL---------EKAYKLSQEWGGIPVLLAGDLNS 295
+ H+ ++P D+K Q+ + L E ++ Q+ PVL+ GD NS
Sbjct: 657 DTIWAVTTHLHWDPKFNDVKTFQVGVLLDHLETLLKEETSHNFRQDIKKFPVLICGDFNS 716
Query: 296 SPNSALYQFLASSELDVCQ 314
NSA+Y+ + + + + Q
Sbjct: 717 YINSAVYELINTGRVQIHQ 735
Score = 88 (36.0 bits), Expect = 3.9e-13, Sum P(2) = 3.9e-13
Identities = 19/72 (26%), Positives = 36/72 (50%)
Query: 392 LGEPLATSYHSKFMGTVDYIWHTEELVPVR-VLETLPVNILRRNGGLPSERWGSDHLALV 450
+GE T++ F +DYIW + + VR +L + + + G P++++ SDH+ L+
Sbjct: 763 IGELPFTNFTPSFTDVIDYIWFSTHALRVRGLLGEVDPEYVSKFIGFPNDKFPSDHIPLL 822
Query: 451 CELAFANNGDGT 462
F G+
Sbjct: 823 ARFEFMKTNTGS 834
>FB|FBgn0011725 [details] [associations]
symbol:twin "twin" species:7227 "Drosophila melanogaster"
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=ISS]
[GO:0030014 "CCR4-NOT complex" evidence=ISS;IDA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0000289 "nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001611 PROSITE:PS51450 Pfam:PF03372 EMBL:AE014297
GO:GO:0005737 InterPro:IPR003591 SMART:SM00369 GO:GO:0048477
InterPro:IPR025875 Pfam:PF12799 GeneTree:ENSGT00550000074364
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0030014 GO:GO:0000289
KO:K12603 OMA:YMLDNLA UniGene:Dm.33521 GeneID:42880
KEGG:dme:Dmel_CG31137 CTD:42880 FlyBase:FBgn0011725 ChiTaRS:twin
GenomeRNAi:42880 NextBio:831058 EMBL:BT010039 RefSeq:NP_732964.1
SMR:Q8IMX1 STRING:Q8IMX1 EnsemblMetazoa:FBtr0084569 UCSC:CG31137-RC
InParanoid:Q8IMX1 Uniprot:Q8IMX1
Length = 567
Score = 145 (56.1 bits), Expect = 7.7e-13, Sum P(3) = 7.7e-13
Identities = 43/123 (34%), Positives = 65/123 (52%)
Query: 105 FVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVD---- 160
F V+ YN+L + A + +Y P L WE RKK I +E+ Y A I+ LQE++
Sbjct: 207 FTVMCYNVLCDKYATRQ--MYGYCPSWALCWEYRKKSIIDEIRHYAADIISLQEIETEQF 264
Query: 161 -HFDDLDDLLQMDGFRGVY--KARTGDAN-------DGCAIFWKEKLFTLLHQENIEFQN 210
HF L +L + DG+ G++ K+R + DGCAIF++ FTL+ + IEF
Sbjct: 265 YHFF-LPEL-KNDGYEGIFSPKSRAKTMSELERKYVDGCAIFFRASKFTLIKESLIEFNQ 322
Query: 211 FGL 213
+
Sbjct: 323 LAM 325
Score = 83 (34.3 bits), Expect = 7.7e-13, Sum P(3) = 7.7e-13
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 398 TSYHSKFMGTVDYIWHTEE-LVPVRVLETLPVNILRRNG--GLPSERWGSDHLALVCEL 453
T+Y F G +DYI++T+ +VP+ +L + + LR N G P SDH L+ EL
Sbjct: 490 TNYTFDFKGIIDYIFYTKTGMVPLGLLGPVSNDWLRENKVVGCPHPHIPSDHFPLLVEL 548
Score = 57 (25.1 bits), Expect = 7.7e-13, Sum P(3) = 7.7e-13
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 285 IPVLLAGDLNSSPNSALYQFLASSELDV 312
+ +LL GD NS P+S + +FL + +
Sbjct: 420 VQLLLCGDFNSLPDSGVVEFLGKGRVSM 447
>RGD|1587344 [details] [associations]
symbol:Ccrn4l "CCR4 carbon catabolite repression 4-like (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=IEA;ISO] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA;ISO] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA;ISO] [GO:0048511 "rhythmic process"
evidence=IEA] Pfam:PF03372 RGD:1587344 GO:GO:0048511 eggNOG:COG5239
InterPro:IPR005135 SUPFAM:SSF56219 HOGENOM:HOG000237357
HOVERGEN:HBG006512 OrthoDB:EOG4NZTTH EMBL:AF199495 IPI:IPI00890357
UniGene:Rn.15040 ProteinModelPortal:Q9ET55 STRING:Q9ET55
PRIDE:Q9ET55 UCSC:RGD:1587344 InParanoid:Q9ET55
Genevestigator:Q9ET55 GermOnline:ENSRNOG00000010799 Uniprot:Q9ET55
Length = 253
Score = 174 (66.3 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 48/131 (36%), Positives = 67/131 (51%)
Query: 97 DLSKFKDKFVVVSYNILGVENAL-KHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILC 155
D S V+ +NIL AL + D + + P + LKWE RK LI EE+ +Y ILC
Sbjct: 59 DCSSSHPPIRVMQWNILA--QALGEGKDNFVQCPVEALKWEERKCLILEEILAYQPDILC 116
Query: 156 LQEVDH-FDDLDDLLQMDGFRGVYKART---------GDANDGCAIFWKEKLFTLLHQEN 205
LQEVDH FD L LL G++G + + + DGCA+F+ + F L++ N
Sbjct: 117 LQEVDHYFDTLQPLLSRLGYQGTFFPKPWSPCLDVEHNNGPDGCALFFLQSRFKLINSTN 176
Query: 206 IEFQNFGLRHN 216
I L+ N
Sbjct: 177 IRLTAMTLKTN 187
Score = 42 (19.8 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 281 EWGGIPVLLAGDLNSSP 297
E IP+++ GD N+ P
Sbjct: 237 EGAKIPLIVCGDFNAEP 253
>CGD|CAL0002486 [details] [associations]
symbol:CCR4 species:5476 "Candida albicans" [GO:0030015
"CCR4-NOT core complex" evidence=IEA;ISM] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IEA;ISM] [GO:0000175 "3'-5'-exoribonuclease activity"
evidence=IEA;ISM] [GO:0009272 "fungal-type cell wall biogenesis"
evidence=IMP] [GO:0055091 "phospholipid homeostasis" evidence=IMP]
[GO:0009405 "pathogenesis" evidence=IMP] [GO:0036180 "filamentous
growth of a population of unicellular organisms in response to
biotic stimulus" evidence=IMP] [GO:0036170 "filamentous growth of a
population of unicellular organisms in response to starvation"
evidence=IMP] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0016593 "Cdc73/Paf1 complex"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0071216 "cellular response to biotic stimulus" evidence=IMP]
[GO:0009267 "cellular response to starvation" evidence=IMP]
[GO:0007089 "traversing start control point of mitotic cell cycle"
evidence=IEA] [GO:0048478 "replication fork protection"
evidence=IEA] [GO:0000076 "DNA replication checkpoint"
evidence=IEA] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IEA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IEA] Pfam:PF00560 InterPro:IPR001611
PROSITE:PS51450 CGD:CAL0002486 Pfam:PF03372 GO:GO:0005634
GO:GO:0005737 GO:GO:0071216 GO:GO:0036180 GO:GO:0009405
GO:GO:0006355 GO:GO:0046872 eggNOG:COG4886 InterPro:IPR003591
SMART:SM00369 GO:GO:0006351 GO:GO:0003723 GO:GO:0055091
GO:GO:0009267 GO:GO:0009272 GO:GO:0090305 EMBL:AL033501
EMBL:AACQ01000053 EMBL:AACQ01000052 GO:GO:0036170
InterPro:IPR025875 Pfam:PF12799 InterPro:IPR005135 SUPFAM:SSF56219
GO:GO:0004535 KO:K12603 PIR:T18239 RefSeq:XP_717564.1
RefSeq:XP_717638.1 ProteinModelPortal:Q5A761 STRING:Q5A761
GeneID:3640749 GeneID:3640796 KEGG:cal:CaO19.12567
KEGG:cal:CaO19.5101 Uniprot:Q5A761
Length = 787
Score = 169 (64.5 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 40/120 (33%), Positives = 68/120 (56%)
Query: 103 DKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDH- 161
D F V+SYN L A P +Y P L+W+ RK L+ +E+ +YN I+C+QEV+
Sbjct: 454 DNFTVLSYNTLCQHYAT--PKMYKFTPSWALQWDYRKNLLEKEVLNYNTDIVCMQEVETK 511
Query: 162 -FDDLD-DLLQMDGFRGVYKARTG-------DAN--DGCAIFWKEKLFTLLHQENIEFQN 210
F + ++ +G++G + ++T D+ DGCA F+K F+L+H++N E+ +
Sbjct: 512 TFQEFWLPVMTANGYKGYFFSKTRSKTMSETDSKKVDGCATFFKNDKFSLIHKQNFEYNS 571
Score = 64 (27.6 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 15/62 (24%), Positives = 30/62 (48%)
Query: 392 LGEPLATSYHSKFMGTVDYIWHTEELVPVR-VLETLPVNILRRNGGLPSERWGSDHLALV 450
+GE T+ F +DYIW++ + V+ +L + + G P + SDH+ ++
Sbjct: 714 VGELPFTNLTPAFTDNIDYIWYSTPTLQVKGLLGRVDEEYTSHSIGFPDANFPSDHVPIL 773
Query: 451 CE 452
+
Sbjct: 774 AK 775
>UNIPROTKB|Q5A761 [details] [associations]
symbol:CCR4 "Glucose-repressible alcohol dehydrogenase
transcriptional effector" species:237561 "Candida albicans SC5314"
[GO:0009267 "cellular response to starvation" evidence=IMP]
[GO:0009272 "fungal-type cell wall biogenesis" evidence=IMP]
[GO:0009405 "pathogenesis" evidence=IMP] [GO:0030447 "filamentous
growth" evidence=IMP] [GO:0036170 "filamentous growth of a
population of unicellular organisms in response to starvation"
evidence=IMP] [GO:0036180 "filamentous growth of a population of
unicellular organisms in response to biotic stimulus" evidence=IMP]
[GO:0055091 "phospholipid homeostasis" evidence=IMP] [GO:0071216
"cellular response to biotic stimulus" evidence=IMP] Pfam:PF00560
InterPro:IPR001611 PROSITE:PS51450 CGD:CAL0002486 Pfam:PF03372
GO:GO:0005634 GO:GO:0005737 GO:GO:0071216 GO:GO:0036180
GO:GO:0009405 GO:GO:0006355 GO:GO:0046872 eggNOG:COG4886
InterPro:IPR003591 SMART:SM00369 GO:GO:0006351 GO:GO:0003723
GO:GO:0055091 GO:GO:0009267 GO:GO:0009272 GO:GO:0090305
EMBL:AL033501 EMBL:AACQ01000053 EMBL:AACQ01000052 GO:GO:0036170
InterPro:IPR025875 Pfam:PF12799 InterPro:IPR005135 SUPFAM:SSF56219
GO:GO:0004535 KO:K12603 PIR:T18239 RefSeq:XP_717564.1
RefSeq:XP_717638.1 ProteinModelPortal:Q5A761 STRING:Q5A761
GeneID:3640749 GeneID:3640796 KEGG:cal:CaO19.12567
KEGG:cal:CaO19.5101 Uniprot:Q5A761
Length = 787
Score = 169 (64.5 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 40/120 (33%), Positives = 68/120 (56%)
Query: 103 DKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDH- 161
D F V+SYN L A P +Y P L+W+ RK L+ +E+ +YN I+C+QEV+
Sbjct: 454 DNFTVLSYNTLCQHYAT--PKMYKFTPSWALQWDYRKNLLEKEVLNYNTDIVCMQEVETK 511
Query: 162 -FDDLD-DLLQMDGFRGVYKARTG-------DAN--DGCAIFWKEKLFTLLHQENIEFQN 210
F + ++ +G++G + ++T D+ DGCA F+K F+L+H++N E+ +
Sbjct: 512 TFQEFWLPVMTANGYKGYFFSKTRSKTMSETDSKKVDGCATFFKNDKFSLIHKQNFEYNS 571
Score = 64 (27.6 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 15/62 (24%), Positives = 30/62 (48%)
Query: 392 LGEPLATSYHSKFMGTVDYIWHTEELVPVR-VLETLPVNILRRNGGLPSERWGSDHLALV 450
+GE T+ F +DYIW++ + V+ +L + + G P + SDH+ ++
Sbjct: 714 VGELPFTNLTPAFTDNIDYIWYSTPTLQVKGLLGRVDEEYTSHSIGFPDANFPSDHVPIL 773
Query: 451 CE 452
+
Sbjct: 774 AK 775
>FB|FBgn0261808 [details] [associations]
symbol:cu "curled" species:7227 "Drosophila melanogaster"
[GO:0005811 "lipid particle" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0009416 "response to light stimulus"
evidence=IMP] [GO:0045475 "locomotor rhythm" evidence=IMP]
[GO:0030014 "CCR4-NOT complex" evidence=IDA] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=IMP]
Pfam:PF03372 EMBL:AE014297 GO:GO:0005811 GO:GO:0009416
GO:GO:0045475 eggNOG:COG5239 GeneTree:ENSGT00550000074364
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0030014 GO:GO:0000289
RefSeq:NP_001097746.1 UniGene:Dm.11906 ProteinModelPortal:A8JQX3
SMR:A8JQX3 STRING:A8JQX3 EnsemblMetazoa:FBtr0113219 GeneID:41339
KEGG:dme:Dmel_CG31299 UCSC:CG31299-RD CTD:41339 FlyBase:FBgn0261808
OrthoDB:EOG4CC2GK PhylomeDB:A8JQX3 GenomeRNAi:41339 NextBio:823348
Bgee:A8JQX3 Uniprot:A8JQX3
Length = 642
Score = 140 (54.3 bits), Expect = 2.5e-10, Sum P(3) = 2.5e-10
Identities = 36/105 (34%), Positives = 56/105 (53%)
Query: 103 DKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDHF 162
D ++ +NIL + +H D + + P + L WE RK LI +E+ ++CLQEVDHF
Sbjct: 309 DDIRLLQWNILS-QTLGQHNDGFVRCPEEALTWEHRKYLIVQEILQNQPDVICLQEVDHF 367
Query: 163 DDLDDLLQMDGFRGVYKARTG------DAN---DGCAIFWK-EKL 197
L +L + G++ + + N DGCAIF+K +KL
Sbjct: 368 KFLQTVLGSQNYAGIFFPKPDSPCLYIEQNNGPDGCAIFYKRDKL 412
Score = 69 (29.3 bits), Expect = 2.5e-10, Sum P(3) = 2.5e-10
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 407 TVDYIWHTEELVPVRVLETLPVNILRRNGGLPSERWGSDHLALVCE 452
T+DY+++T + + ++ P PS ++ SDH +LVC+
Sbjct: 561 TIDYVFYTPDRLKIKNCLDFPAGEQIGKNRTPSFQYPSDHFSLVCD 606
Score = 54 (24.1 bits), Expect = 2.5e-10, Sum P(3) = 2.5e-10
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 283 GGIPVLLAGDLNSSPNSALYQFLASSEL 310
G P+LL GD N+ P +Y + +L
Sbjct: 482 GDTPLLLCGDFNAEPVEPIYATILGCDL 509
>TAIR|locus:2028696 [details] [associations]
symbol:AT1G31530 "AT1G31530" species:3702 "Arabidopsis
thaliana" [GO:0005575 "cellular_component" evidence=ND] [GO:0016787
"hydrolase activity" evidence=ISS] Pfam:PF03372 EMBL:CP002684
EMBL:AC074360 InterPro:IPR005135 SUPFAM:SSF56219 KO:K12603
HOGENOM:HOG000265770 IPI:IPI00519106 RefSeq:NP_174438.1
UniGene:At.51858 ProteinModelPortal:Q9C6U7 PRIDE:Q9C6U7
EnsemblPlants:AT1G31530.1 GeneID:840043 KEGG:ath:AT1G31530
TAIR:At1g31530 InParanoid:Q9C6U7 OMA:FEADFIC PhylomeDB:Q9C6U7
ProtClustDB:CLSN2913551 ArrayExpress:Q9C6U7 Genevestigator:Q9C6U7
Uniprot:Q9C6U7
Length = 283
Score = 133 (51.9 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 50/189 (26%), Positives = 79/189 (41%)
Query: 129 PPKFLKWERRKKLIREEMSSYNASILCLQEVDHFDDLDDL-LQMDGFRGVYKARTGDAND 187
PP+ + WE+R K I + + ++ A +CLQEVD + D ++ G+ G+ + +
Sbjct: 11 PPESILWEKRSKAILDNIKNFEADFICLQEVDEYHSFFDRNMEAQGYSGI-PIENKEGYE 69
Query: 188 GCAIFWKEKLFTLLHQENIEFQNFGLRHNVAQLCVLKMNXXXXXXXXXXXXXXXXXXXXX 247
CAIF+K K + + Q + N LCV +
Sbjct: 70 -CAIFFKPKFAEFITYQTTRIQGYTKYEN---LCVAPSSSTVSSESSDVVNAEELSVVMV 125
Query: 248 XXGNI----HVLF---------NPNR-GDIKLGQIR-LFLEKA-YK--LSQEWGGIP-VL 288
+ HV+ P+R D+KL Q++ L E A +K +S P V+
Sbjct: 126 AFKILKPFNHVVIIASSHLKSGKPDRWDDLKLAQVKTLMTELASFKEIISALTNCSPSVI 185
Query: 289 LAGDLNSSP 297
LAGD NS P
Sbjct: 186 LAGDFNSKP 194
Score = 73 (30.8 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 393 GEPLATSYHSKFMGTVDYIW--HTEELVPVRVLETLPVNILRRNGGLPSERWGSDHLALV 450
GEP T+ F T+DY++ H+E + PV++L++ P + LP+E SDHL +
Sbjct: 220 GEPRFTNNVPGFAETLDYMFYTHSEIISPVKLLDS-PDEV----DFLPNEIHPSDHLPIG 274
Query: 451 CELAFANN 458
E N
Sbjct: 275 VEFEINRN 282
>UNIPROTKB|F1RYS2 [details] [associations]
symbol:CNOT6L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0061157 "mRNA destabilization" evidence=IEA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0004535
"poly(A)-specific ribonuclease activity" evidence=IEA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=IEA] InterPro:IPR001611
PROSITE:PS51450 Pfam:PF03372 GO:GO:0005737 GO:GO:0008284
GeneTree:ENSGT00550000074364 InterPro:IPR005135 SUPFAM:SSF56219
GO:GO:0000288 GO:GO:0004535 OMA:YMLDNLA GO:GO:0061157 EMBL:CU914220
Ensembl:ENSSSCT00000009846 Uniprot:F1RYS2
Length = 557
Score = 137 (53.3 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 63/240 (26%), Positives = 96/240 (40%)
Query: 89 RQW-TFSSRDLSKFKDKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMS 147
R W T RD F V+ YN+L + A + LY P L WE RKK I EE+
Sbjct: 172 RPWITLKERDQILPSASFTVMCYNVLCDKYATRQ--LYGYCPSWALNWEYRKKGIMEEIV 229
Query: 148 SYNASILCLQEVDH---------FDDLDDLLQMDGF-----RG-VYKARTGDANDGCAIF 192
+ +A I+ LQ+ F L D L+ DGF R + + DGCAIF
Sbjct: 230 NCDADIISLQQNPKELFSLLSLFFFFLKDKLK-DGFFLQSSRAKIMSEQERKHVDGCAIF 288
Query: 193 WKEKLFTLLHQENIEFQNFGL---------------RHNVAQLCVLKMNXXXXXXXXXXX 237
+K + FTL+ + +EF + + N+ VL+++
Sbjct: 289 FKTEKFTLVQKHTVEFNQVAMANSDGSEAMLNRVMTKDNIGVAVVLEVHKELFGAGVKPI 348
Query: 238 XXXXXXXXXXXXGNIHVLFNPNRGDIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSP 297
N H+ ++P D+KL Q +F+ + + ++ P D NS P
Sbjct: 349 HAADKQLLIVA--NAHMHWDPEYSDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIP 406
Score = 65 (27.9 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 20/59 (33%), Positives = 30/59 (50%)
Query: 398 TSYHSKFMGTVDYIWHTEELVPVR-VLETLPVNILRRNG--GLPSERWGSDHLALVCEL 453
T+Y F G +DYI++++ + V VL L L N G P SDH +L+ +L
Sbjct: 480 TNYTFDFKGVIDYIFYSKTHMNVLGVLGPLDPQWLVENNITGCPHPHIPSDHFSLLTQL 538
>CGD|CAL0006120 [details] [associations]
symbol:orf19.5527 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0004521
"endoribonuclease activity" evidence=IEA] CGD:CAL0006120
Pfam:PF03372 eggNOG:COG5239 InterPro:IPR005135 SUPFAM:SSF56219
EMBL:AACQ01000034 KO:K14812 RefSeq:XP_719092.1 GeneID:3639207
KEGG:cal:CaO19.5527 Uniprot:Q5AC23
Length = 519
Score = 145 (56.1 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 37/103 (35%), Positives = 55/103 (53%)
Query: 107 VVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVD--HFDD 164
++SYNIL L ++Y K LKW R +++ +E+ YNA I+CLQEVD ++
Sbjct: 117 IMSYNILA--QTLIRREIYP-TNGKILKWSVRSQILLDELKHYNADIMCLQEVDKVQYEG 173
Query: 165 L-DDLLQMDGFRGVYKARTGDANDGCAIFWKEKLFTLLHQENI 206
L+ G+ + R N GC I +++KLFT HQ I
Sbjct: 174 FWVSQLEKLGYSTRFY-RNNTKNHGCVIVFRDKLFTCKHQSFI 215
Score = 55 (24.4 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 31/136 (22%), Positives = 57/136 (41%)
Query: 291 GDLNSSPNSALYQFLASSELDVCQHDRR----HISGQFAKCR-----DIDFQKRNSTSDW 341
GD NS P A Y+ + + + R ++ ++K R DID ++ D
Sbjct: 316 GDFNSEPFDAPYRAITAKPIKFSGRSRNVLGCSLAYTYSKDRSLDEDDIDTEELEQERDN 375
Query: 342 I-SISRPLLYQWTDVELRLATGCEGV-TELQ-HQLNLCSAYF--GIPGSHRTRDNLGEPL 396
S P ++ T + +L E +L ++L S + P + T + EP
Sbjct: 376 NPSDPEPETFETTPEQDKLINDLEEAHNDLDVRAISLYSVGYKQAHPENANTAGHRNEPA 435
Query: 397 ATSYHSKFMGTVDYIW 412
+++ K+ G +DYI+
Sbjct: 436 FSNWVDKWNGMLDYIF 451
>SGD|S000004898 [details] [associations]
symbol:NGL2 "Protein involved in 5.8S rRNA processing"
species:4932 "Saccharomyces cerevisiae" [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0090305 "nucleic
acid phosphodiester bond hydrolysis" evidence=IEA] [GO:0004521
"endoribonuclease activity" evidence=ISS;IMP] [GO:0005622
"intracellular" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=IMP] SGD:S000004898 Pfam:PF03372 GO:GO:0005634
GO:GO:0005737 GO:GO:0003723 GO:GO:0005622 EMBL:BK006946
GO:GO:0004527 EMBL:Z49704 GO:GO:0004521 eggNOG:COG5239
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0006364 PIR:S54592
RefSeq:NP_014012.1 ProteinModelPortal:Q03264 DIP:DIP-894N
IntAct:Q03264 STRING:Q03264 PaxDb:Q03264 PeptideAtlas:Q03264
EnsemblFungi:YMR285C GeneID:855329 KEGG:sce:YMR285C CYGD:YMR285c
GeneTree:ENSGT00550000076051 HOGENOM:HOG000248147 KO:K14812
OMA:MRAISLY OrthoDB:EOG4K3Q4X NextBio:979049 Genevestigator:Q03264
GermOnline:YMR285C Uniprot:Q03264
Length = 515
Score = 139 (54.0 bits), Expect = 5.2e-08, Sum P(3) = 5.2e-08
Identities = 36/109 (33%), Positives = 57/109 (52%)
Query: 104 KFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDH-- 161
+F +++YN L AL L+ LKW RR K++ E YN+ ++CLQE+DH
Sbjct: 111 RFKLMTYNCLA--QALIRRKLFPDSGDA-LKWYRRSKVLLNEFKYYNSDVICLQEIDHIQ 167
Query: 162 FDDL--DDLLQMDGFRGVYKARTGDANDGCAIFWKEKLFTLLHQENIEF 208
F D+ ++ G+ G Y R N G AI W+ +LF + + I++
Sbjct: 168 FQSFWKDEFSKL-GYDGQYY-RNATKNHGVAIMWRRELFHQVDKMLIDY 214
Score = 52 (23.4 bits), Expect = 5.2e-08, Sum P(3) = 5.2e-08
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 427 PVNILRRNGGLPSERWGSDHLALVCEL 453
P N + ++G + SDHL++VC+L
Sbjct: 485 PGNEMTKHGQPHVGEYASDHLSMVCDL 511
Score = 45 (20.9 bits), Expect = 5.2e-08, Sum P(3) = 5.2e-08
Identities = 9/31 (29%), Positives = 20/31 (64%)
Query: 390 DN-LGEPLATSYHSKFMGTVDYIWHTEELVP 419
DN GEP +++ + + G +DY+++ ++ P
Sbjct: 426 DNDRGEPEISNWANTWRGLLDYLFYVKKWDP 456
>SGD|S000004587 [details] [associations]
symbol:NGL3 "3'-5' exonuclease specific for poly-A RNAs"
species:4932 "Saccharomyces cerevisiae" [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0004535 "poly(A)-specific ribonuclease
activity" evidence=IDA] [GO:0090305 "nucleic acid phosphodiester
bond hydrolysis" evidence=IEA] [GO:0043633
"polyadenylation-dependent RNA catabolic process" evidence=IDA]
[GO:0004519 "endonuclease activity" evidence=ISS] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0004518 "nuclease activity" evidence=IEA]
SGD:S000004587 Pfam:PF03372 EMBL:BK006946 GO:GO:0004519
eggNOG:COG5239 InterPro:IPR005135 SUPFAM:SSF56219 EMBL:Z49210
GO:GO:0004535 EMBL:Z49218 GeneTree:ENSGT00550000076051
HOGENOM:HOG000248147 OrthoDB:EOG4K3Q4X PIR:S54066
RefSeq:NP_013588.1 ProteinModelPortal:Q03210 IntAct:Q03210
MINT:MINT-4084056 STRING:Q03210 PRIDE:Q03210 EnsemblFungi:YML118W
GeneID:854921 KEGG:sce:YML118W CYGD:YML118w OMA:FETANNI
NextBio:977935 Genevestigator:Q03210 GermOnline:YML118W
GO:GO:0043633 Uniprot:Q03210
Length = 505
Score = 142 (55.0 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 49/201 (24%), Positives = 83/201 (41%)
Query: 107 VVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDHFDDLD 166
+++YN L L D + + P LKW +R K++ E+ Y ++ LQEVD +++L+
Sbjct: 111 IMTYNTLA--QTLIRRDFFPESGPA-LKWHKRSKVLVHELKKYRPDVVSLQEVD-YNELN 166
Query: 167 ---DLLQMDGFRGVYKARTGDANDGCAIFWKEKLFTLLHQENIEFQNFGLRHNVAQLCVL 223
+ GF ++K G + G + W K F L + +++ N L NV
Sbjct: 167 FWQENFHKLGFDVIFKRHEGKTH-GLLVAWNNKKFQLDNDWMLDYDNI-LAGNVISARTR 224
Query: 224 KMNXXXXXXXXXXXXXXXXXXXXXXXGNIHVLFNPNRGDIKLGQIRLFLEKAYKLS--QE 281
N N H+ ++P +L Q L L+K ++ +
Sbjct: 225 TKNIALIISLYFKGITDSSSRGIIVA-NTHLFWHPFGVFERLRQSYLVLQKIQEIKACSK 283
Query: 282 WGGIPVLLAGDLNSSPNSALY 302
+ G LL GD N+ P Y
Sbjct: 284 YNGWHSLLMGDFNTEPEEPPY 304
Score = 45 (20.9 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 393 GEPLATSYHSKFMGTVDYIWHTE 415
GEP +++ + + G +DYI++ E
Sbjct: 412 GEPGLSNWANTWCGLLDYIFYIE 434
Score = 44 (20.5 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 438 PSE-RWGSDHLALVCELAFANNGD 460
P E + SDH++L+C++ G+
Sbjct: 476 PFEGEYASDHISLMCQIRLFFGGE 499
>GENEDB_PFALCIPARUM|PFC0850c [details] [associations]
symbol:PFC0850c "hypothetical protein,
conserved" species:5833 "Plasmodium falciparum" [GO:0020011
"apicoplast" evidence=RCA] Pfam:PF03372 GO:GO:0004527 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 EMBL:AL844502 PIR:T18484
RefSeq:XP_001351262.1 ProteinModelPortal:O77366
EnsemblProtists:PFC0850c:mRNA GeneID:814506 KEGG:pfa:PFC0850c
EuPathDB:PlasmoDB:PF3D7_0319200 HOGENOM:HOG000283196
ProtClustDB:CLSZ2433494 Uniprot:O77366
Length = 906
Score = 129 (50.5 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 35/114 (30%), Positives = 59/114 (51%)
Query: 102 KDKFVVVSYNILG-----VENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCL 156
K+ ++SYNIL + AL+H ++ + P +LK R L+ ++++ N I+ L
Sbjct: 557 KNVIRILSYNILAPIYTNTKYALEH--MFKNIDPCYLKTNYRSHLLIHDINN-NYDIISL 613
Query: 157 QEVDHF--DDLDDLLQMDGFRGVYKARTGDANDGCAIFWKEKLFTLLHQENIEF 208
QEV + L + + YK + NDGC++F +K FTL+ +N EF
Sbjct: 614 QEVSEYLHSHLFCTFLNENYFSNYKPKNNFGNDGCSLFVNKKKFTLIEYKNYEF 667
Score = 58 (25.5 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 13/56 (23%), Positives = 31/56 (55%)
Query: 398 TSYHSKFMGTVDYIWHTEELVPVRVLETLPVNILRRNGGLPSERWGSDHLALVCEL 453
T++++ F+ +DYI+ + + +VL+ + ++ G S SDH+++ E+
Sbjct: 849 TNWNNNFIDVLDYIFLSTNIKVRKVLKGIDKECFQKYKGALSPINPSDHISIAAEV 904
Score = 55 (24.4 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 10/39 (25%), Positives = 24/39 (61%)
Query: 272 LEKAYKLSQEWGGIPVLLAGDLNSSPNSALYQFLASSEL 310
L+K Y+L+ + ++L GD N++ +S ++ F+ ++
Sbjct: 746 LKKKYQLTYPEKEVYIILNGDFNTNFDSEVFHFIQGKDI 784
>UNIPROTKB|O77366 [details] [associations]
symbol:PFC0850c "Endonuclease/exonuclease/phosphatase
family protein, putative" species:36329 "Plasmodium falciparum 3D7"
[GO:0020011 "apicoplast" evidence=RCA] Pfam:PF03372 GO:GO:0004527
GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219 EMBL:AL844502
PIR:T18484 RefSeq:XP_001351262.1 ProteinModelPortal:O77366
EnsemblProtists:PFC0850c:mRNA GeneID:814506 KEGG:pfa:PFC0850c
EuPathDB:PlasmoDB:PF3D7_0319200 HOGENOM:HOG000283196
ProtClustDB:CLSZ2433494 Uniprot:O77366
Length = 906
Score = 129 (50.5 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 35/114 (30%), Positives = 59/114 (51%)
Query: 102 KDKFVVVSYNILG-----VENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCL 156
K+ ++SYNIL + AL+H ++ + P +LK R L+ ++++ N I+ L
Sbjct: 557 KNVIRILSYNILAPIYTNTKYALEH--MFKNIDPCYLKTNYRSHLLIHDINN-NYDIISL 613
Query: 157 QEVDHF--DDLDDLLQMDGFRGVYKARTGDANDGCAIFWKEKLFTLLHQENIEF 208
QEV + L + + YK + NDGC++F +K FTL+ +N EF
Sbjct: 614 QEVSEYLHSHLFCTFLNENYFSNYKPKNNFGNDGCSLFVNKKKFTLIEYKNYEF 667
Score = 58 (25.5 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 13/56 (23%), Positives = 31/56 (55%)
Query: 398 TSYHSKFMGTVDYIWHTEELVPVRVLETLPVNILRRNGGLPSERWGSDHLALVCEL 453
T++++ F+ +DYI+ + + +VL+ + ++ G S SDH+++ E+
Sbjct: 849 TNWNNNFIDVLDYIFLSTNIKVRKVLKGIDKECFQKYKGALSPINPSDHISIAAEV 904
Score = 55 (24.4 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 10/39 (25%), Positives = 24/39 (61%)
Query: 272 LEKAYKLSQEWGGIPVLLAGDLNSSPNSALYQFLASSEL 310
L+K Y+L+ + ++L GD N++ +S ++ F+ ++
Sbjct: 746 LKKKYQLTYPEKEVYIILNGDFNTNFDSEVFHFIQGKDI 784
>POMBASE|SPBC9B6.11c [details] [associations]
symbol:SPBC9B6.11c "CCR4/nocturin family
endoribonuclease (predicted)" species:4896 "Schizosaccharomyces
pombe" [GO:0004521 "endoribonuclease activity" evidence=ISO]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA processing"
evidence=ISO] PomBase:SPBC9B6.11c Pfam:PF03372 GO:GO:0005829
GO:GO:0005634 EMBL:CU329671 GO:GO:0004527 GO:GO:0004521
eggNOG:COG5239 InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0006364
HOGENOM:HOG000248147 KO:K14812 OMA:MRAISLY OrthoDB:EOG4K3Q4X
PIR:T40792 RefSeq:NP_595753.1 ProteinModelPortal:Q9Y7M8
EnsemblFungi:SPBC9B6.11c.1 GeneID:2541286 KEGG:spo:SPBC9B6.11c
NextBio:20802397 Uniprot:Q9Y7M8
Length = 502
Score = 96 (38.9 bits), Expect = 4.6e-07, Sum P(3) = 4.6e-07
Identities = 28/107 (26%), Positives = 53/107 (49%)
Query: 107 VVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVD-HF--D 163
+++YN+L N + ++ + LKW+ R +++ E++ Y+ ++ C+QEVD F +
Sbjct: 123 IMTYNVLAQTNIRR--SMFPH-SGEALKWKNRSRMLANELTYYSPTLGCMQEVDAEFVPN 179
Query: 164 DLDDLLQMDGFRGVYKARTGDANDGCAIFWKEKLFTLLHQENIEFQN 210
LL G+ + G + G IFWK LF + I + +
Sbjct: 180 FYKKLLGGLGYELHFIKGEGKTH-GIMIFWKSSLFKKVQDLTIYYDD 225
Score = 82 (33.9 bits), Expect = 4.6e-07, Sum P(3) = 4.6e-07
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 253 HVLFNPNRGDIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSPNSALYQFLASSELDV 312
H+ ++P +L Q + +++ K++Q PV +AGD N+ P + L + L +
Sbjct: 260 HLFWHPYGSYERLRQGAILVKEVNKMAQSHPSWPVFIAGDFNTEPFDTNFPALTTRPLSI 319
Query: 313 CQ 314
CQ
Sbjct: 320 CQ 321
Score = 53 (23.7 bits), Expect = 4.6e-07, Sum P(3) = 4.6e-07
Identities = 30/103 (29%), Positives = 46/103 (44%)
Query: 370 QHQLN--LCSAY-FGIPGSH--RTRDNLGEPLATSYHSKFMGTVDYIW----HTEELVPV 420
QH+ N L S Y G H ++ P T++ + G +DYI+ T P
Sbjct: 398 QHEQNPVLFSLYSVGYKLVHPENAKNTFDHPAFTNWAHAYQGHLDYIFVMNRDTSLQTPE 457
Query: 421 -RVLETLPVNILRRNGGLPSE---------RWGSDHLALVCEL 453
+V+E + + L R LPSE R+ SDH+AL+ +
Sbjct: 458 NQVVEGIKLKALLRVP-LPSEMKEAEPLEGRYPSDHVALMANV 499
>SGD|S000005402 [details] [associations]
symbol:NGL1 "Putative endonuclease" species:4932
"Saccharomyces cerevisiae" [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=ISS]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
evidence=IEA] SGD:S000005402 Pfam:PF03372 GO:GO:0005739
EMBL:BK006948 GO:GO:0004527 GO:GO:0004519 eggNOG:COG5239
InterPro:IPR005135 SUPFAM:SSF56219 EMBL:Z74784 EMBL:AY693067
PIR:S66727 RefSeq:NP_014600.1 ProteinModelPortal:Q08213 SMR:Q08213
DIP:DIP-4236N IntAct:Q08213 MINT:MINT-522599 STRING:Q08213
PaxDb:Q08213 EnsemblFungi:YOL042W GeneID:854115 KEGG:sce:YOL042W
CYGD:YOL042w HOGENOM:HOG000000773 OMA:CAIFFRS OrthoDB:EOG42C1JF
NextBio:975810 Genevestigator:Q08213 GermOnline:YOL042W
Uniprot:Q08213
Length = 363
Score = 93 (37.8 bits), Expect = 5.8e-06, Sum P(2) = 5.8e-06
Identities = 24/86 (27%), Positives = 49/86 (56%)
Query: 94 SSRDLSKF--KD-KFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEM-SSY 149
+ +++ K+ KD +F +++YN+L + P +Y V + W R +L+ +E+ +++
Sbjct: 13 TKQNIGKYVRKDARFTLLTYNMLSP--SYMWPQVYTYVAEPYKNWSYRHRLLEKELLNTF 70
Query: 150 NASILCLQEV---DHFDDLDDLLQMD 172
A I+CLQE+ D+ D D + +D
Sbjct: 71 KADIMCLQEMTARDYEDYWHDSIGVD 96
Score = 85 (35.0 bits), Expect = 5.8e-06, Sum P(2) = 5.8e-06
Identities = 21/59 (35%), Positives = 31/59 (52%)
Query: 398 TSYHSKFMGTVDYIW-HTEELVPVRVLETLPVN--ILRRNG-GLPSERWGSDHLALVCE 452
T Y K G DY+W H + + ++L V+ +L N GLP+E SDH+ L+ E
Sbjct: 301 TCYSGKLKGIFDYVWYHDSDFLLTKILTGNEVSDELLASNQLGLPNENHPSDHIPLLTE 359
>TAIR|locus:2204863 [details] [associations]
symbol:AT1G02270 "AT1G02270" species:3702 "Arabidopsis
thaliana" [GO:0003824 "catalytic activity" evidence=ISS]
[GO:0005509 "calcium ion binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=IDA] [GO:0009409 "response to cold"
evidence=IEP] InterPro:IPR002048 InterPro:IPR011992 PROSITE:PS50222
Pfam:PF03372 Prosite:PS00018 GO:GO:0016021 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0009409 GO:GO:0005509
Gene3D:1.10.238.10 InterPro:IPR005135 SUPFAM:SSF56219 EMBL:U89959
EMBL:AY052704 EMBL:AY063716 IPI:IPI00522847 RefSeq:NP_563646.1
UniGene:At.10716 ProteinModelPortal:O81916 SMR:O81916
EnsemblPlants:AT1G02270.1 GeneID:839381 KEGG:ath:AT1G02270
TAIR:At1g02270 eggNOG:NOG134127 HOGENOM:HOG000006305
InParanoid:O81916 OMA:VESNISC PhylomeDB:O81916
ProtClustDB:CLSN2916945 Genevestigator:O81916 Uniprot:O81916
Length = 484
Score = 118 (46.6 bits), Expect = 0.00056, P = 0.00056
Identities = 50/195 (25%), Positives = 86/195 (44%)
Query: 135 WERRKKLIREEMSSYNASILCLQEV-DHFDDLDDL----LQMDGFRGVYK-ARTGDANDG 188
W R + I + + +S++CLQEV ++L ++ L G+ +Y+ ART DG
Sbjct: 102 WLARNQRILDLLLHQRSSVICLQEVWVGNEELVNMYHHQLSSSGYT-IYQLARTNSRGDG 160
Query: 189 CAIFWKEKLFTLLHQENIEFQNFGLRHNVAQLCVLKMNXXXXXXXXXXXXXXXXXXXXXX 248
+ F +++ + F +FG R VAQL +K
Sbjct: 161 LLTAIHKDHFKVVNYRELLFNDFGDR--VAQLLHVK------TVIPFPLNGKQDVQQEVI 212
Query: 249 XGNIHVLF--NPNRGDIKLGQIRLFLE--KAYKLSQEWGGIPVLLAGDLNSSPNSALYQF 304
N H+LF + + ++L Q+ LE +AY+ + +P++L GD N S +Y+F
Sbjct: 213 IVNTHLLFPHDSSLSIVRLHQVYKILEYLEAYQKENKLNHMPIILCGDWNGSKRGHVYKF 272
Query: 305 LASSELDVCQHDRRH 319
L S + +D H
Sbjct: 273 LRSQGF-ISSYDDAH 286
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.137 0.429 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 462 408 0.00079 118 3 11 22 0.38 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 58
No. of states in DFA: 625 (66 KB)
Total size of DFA: 305 KB (2156 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 29.97u 0.10s 30.07t Elapsed: 00:00:01
Total cpu time: 29.98u 0.10s 30.08t Elapsed: 00:00:01
Start: Fri May 10 16:21:44 2013 End: Fri May 10 16:21:45 2013