Query 012486
Match_columns 462
No_of_seqs 309 out of 1845
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 03:09:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012486.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012486hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03144 Carbon catabolite rep 100.0 7.3E-62 1.6E-66 512.5 30.3 329 83-458 223-603 (606)
2 KOG2338 Transcriptional effect 100.0 4.6E-49 1E-53 395.8 22.8 339 103-456 115-494 (495)
3 COG5239 CCR4 mRNA deadenylase, 100.0 3.4E-44 7.3E-49 347.2 16.8 290 104-458 30-368 (378)
4 KOG0620 Glucose-repressible al 100.0 9.6E-42 2.1E-46 342.2 13.2 312 87-459 2-355 (361)
5 PRK11756 exonuclease III; Prov 99.9 4E-26 8.6E-31 223.7 18.2 253 105-455 1-268 (268)
6 TIGR03395 sphingomy sphingomye 99.9 2.2E-24 4.8E-29 212.5 20.9 173 105-307 1-200 (283)
7 COG3568 ElsH Metal-dependent h 99.9 8.1E-24 1.8E-28 201.4 15.3 165 104-308 9-188 (259)
8 PRK05421 hypothetical protein; 99.9 7.7E-23 1.7E-27 199.9 20.0 154 102-299 41-197 (263)
9 COG0708 XthA Exonuclease III [ 99.9 2.1E-22 4.5E-27 192.3 15.6 247 105-455 1-261 (261)
10 TIGR00195 exoDNase_III exodeox 99.9 7.6E-22 1.7E-26 191.8 18.1 147 105-299 1-153 (254)
11 PTZ00297 pantothenate kinase; 99.9 9.4E-21 2E-25 219.1 22.1 176 102-308 8-227 (1452)
12 TIGR00633 xth exodeoxyribonucl 99.9 1E-20 2.2E-25 183.4 17.7 148 105-299 1-156 (255)
13 PRK13911 exodeoxyribonuclease 99.8 1.5E-19 3.2E-24 175.1 16.2 236 105-453 1-249 (250)
14 KOG3873 Sphingomyelinase famil 99.8 8.7E-20 1.9E-24 177.0 13.8 171 102-310 6-196 (422)
15 smart00476 DNaseIc deoxyribonu 99.8 7.4E-19 1.6E-23 171.4 16.6 160 103-298 16-190 (276)
16 PF03372 Exo_endo_phos: Endonu 99.7 8.8E-17 1.9E-21 152.1 17.4 150 137-301 16-173 (249)
17 KOG2756 Predicted Mg2+-depende 99.7 1.5E-16 3.2E-21 149.0 15.3 157 103-296 98-255 (349)
18 PRK15251 cytolethal distending 99.6 6.5E-15 1.4E-19 141.7 16.5 157 103-305 23-205 (271)
19 COG3021 Uncharacterized protei 99.5 5.2E-14 1.1E-18 136.7 13.3 159 102-307 86-245 (309)
20 COG2374 Predicted extracellula 99.5 5.6E-13 1.2E-17 140.8 16.2 215 82-308 440-698 (798)
21 smart00128 IPPc Inositol polyp 99.0 4.4E-08 9.5E-13 98.1 18.9 67 243-309 136-210 (310)
22 KOG0566 Inositol-1,4,5-triphos 98.4 1E-05 2.2E-10 88.1 16.4 107 188-310 629-743 (1080)
23 PF14529 Exo_endo_phos_2: Endo 97.9 2.7E-05 5.8E-10 66.0 5.8 42 397-450 78-119 (119)
24 PLN03191 Type I inositol-1,4,5 97.2 0.0046 9.9E-08 66.0 13.1 55 243-298 418-483 (621)
25 KOG1294 Apurinic/apyrimidinic 97.2 0.0022 4.8E-08 64.4 9.8 65 374-455 264-335 (335)
26 COG5239 CCR4 mRNA deadenylase, 96.4 0.003 6.5E-08 62.9 4.2 71 246-318 139-209 (378)
27 COG5411 Phosphatidylinositol 5 96.1 0.045 9.8E-07 56.1 10.5 53 244-296 164-218 (460)
28 PTZ00312 inositol-1,4,5-tripho 93.5 0.27 5.8E-06 48.1 7.4 62 243-306 78-151 (356)
29 KOG1976 Inositol polyphosphate 91.3 0.4 8.6E-06 47.0 5.6 67 242-310 166-244 (391)
30 KOG0565 Inositol polyphosphate 49.6 17 0.00037 31.9 3.1 58 243-300 57-124 (145)
31 KOG1387 Glycosyltransferase [C 48.8 14 0.00031 37.4 2.7 52 244-300 41-93 (465)
32 KOG0808 Carbon-nitrogen hydrol 47.8 17 0.00036 35.2 2.9 26 136-161 99-124 (387)
33 COG1407 Predicted ICC-like pho 38.0 70 0.0015 30.8 5.5 54 243-296 19-76 (235)
34 PLN03191 Type I inositol-1,4,5 37.2 36 0.00079 37.1 3.8 16 441-456 577-592 (621)
35 cd07393 MPP_DR1119 Deinococcus 33.8 66 0.0014 30.5 4.7 48 247-296 2-54 (232)
36 cd08165 MPP_MPPE1 human MPPE1 32.5 58 0.0013 28.9 3.9 49 248-296 2-51 (156)
37 TIGR00024 SbcD_rel_arch putati 31.5 1.3E+02 0.0027 28.7 6.2 53 244-296 15-71 (225)
38 cd07391 MPP_PF1019 Pyrococcus 26.3 44 0.00096 30.0 2.0 49 248-296 2-54 (172)
39 cd00840 MPP_Mre11_N Mre11 nucl 20.2 1.8E+02 0.0039 26.6 4.9 51 246-297 2-55 (223)
40 PHA02546 47 endonuclease subun 20.0 2.3E+02 0.0049 28.7 5.9 50 246-296 3-52 (340)
No 1
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=100.00 E-value=7.3e-62 Score=512.49 Aligned_cols=329 Identities=35% Similarity=0.558 Sum_probs=259.7
Q ss_pred CCCCCCCceEEcCCC----------CCCCCCeeEEEEcccCcccccCcCCCCCCCCCccCCChHHHHHHHHHHHhhcCCc
Q 012486 83 SVTDDHRQWTFSSRD----------LSKFKDKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNAS 152 (462)
Q Consensus 83 ~~~~~~R~w~~~~~~----------~~~~~~~~rV~SyNIl~~~~~~~~~~~y~~~~~~~l~w~~R~~~I~~~I~~~~pD 152 (462)
.+.+..|.|+..... .......|||||||||++.|+. .++|+||+++.++|++|+++|+++|..++||
T Consensus 223 ~p~p~~R~~~~~~~~~~~~~~~~~~~~~~~~~frVmSYNILAd~ya~--~dly~ycp~~aL~W~yRk~lIl~EI~~~~aD 300 (606)
T PLN03144 223 APSPTPRRLIQVNGLDGMGHLDLDGRTSSAGTFTVLSYNILSDLYAT--SDMYSYCPPWALSWTYRRQNLLREIVGYRAD 300 (606)
T ss_pred CCCCCCcceEEecccccccccccccccCCCCCEEEEEeeeccccccC--cccccCCCccccCHHHHHHHHHHHHHhcCCC
Confidence 445677999987641 1134678999999999999885 5799999999999999999999999999999
Q ss_pred eEeeeccc--ChHh-HHHHHhhCCceEEEecCCCC-------CCceeEEEEccCCceeeeeeeeeecccC----------
Q 012486 153 ILCLQEVD--HFDD-LDDLLQMDGFRGVYKARTGD-------ANDGCAIFWKEKLFTLLHQENIEFQNFG---------- 212 (462)
Q Consensus 153 IIcLQEvd--~~~~-l~~~L~~~gY~~~~~~~~~~-------~~~G~aI~~r~srf~l~~~~~i~~~~~~---------- 212 (462)
|||||||+ +|++ |.+.|.++||.++|..+++. ..+|||||||++||++++...++|+...
T Consensus 301 IICLQEV~~~~~~d~~~p~L~~~GY~Gv~~~Kt~~~~~~~~~~~DGcAIFyr~drFeLv~~~~ief~~~~lslt~~~~~s 380 (606)
T PLN03144 301 ILCLQEVQSDHFEEFFAPELDKHGYQALYKKKTTEVYTGNTYVIDGCATFFRRDRFSLVKKYEVEFNKAAQSLTEALIPS 380 (606)
T ss_pred EEEEeecCHHHHHHHHHhhhhhcCceEEEeCCCCccccccccCCceeEEEEECcceEEEEeeeeeccchhhccCcccccc
Confidence 99999995 4665 47899999999999877542 5899999999999999999888775421
Q ss_pred ----------CCCceeEEEEEEechhhhhhhhhcccccccCCCEEEEEeeCCCCCCCCchhHHHHHHHHHHHHHHHhhhc
Q 012486 213 ----------LRHNVAQLCVLKMNQSLLESAEESSLSMVSQSQSLVVGNIHVLFNPNRGDIKLGQIRLFLEKAYKLSQEW 282 (462)
Q Consensus 213 ----------~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~g~~l~V~ntHL~~~p~~~~~R~~Q~~~Ll~~l~~~~~~~ 282 (462)
.++|++++++|+...... .......++.|+|+||||+|+|..+++|+.|++.|++.++++...
T Consensus 381 ~~~~~~l~Rl~kdNVAliv~Le~k~~~~------~~~~~~~~~~l~VaNTHL~~~p~~~dvRl~Q~~~Ll~~l~~~~~~- 453 (606)
T PLN03144 381 AQKKAALNRLLKDNVALIVVLEAKFGNQ------GADNGGKRQLLCVANTHIHANQELKDVKLWQVHTLLKGLEKIAAS- 453 (606)
T ss_pred ccchhhhhhhccCcEEEEEEEEEecccc------cccCCCCccEEEEEEeeeccCCccchhHHHHHHHHHHHHHHHhhc-
Confidence 245688888887542100 000012356899999999999999999999999999999988643
Q ss_pred CCCCEEEcccCCCCCCchhHHHHhcCCccccccccccccccccccccccccccCCCccccccccCcccccchhhHhhhcC
Q 012486 283 GGIPVLLAGDLNSSPNSALYQFLASSELDVCQHDRRHISGQFAKCRDIDFQKRNSTSDWISISRPLLYQWTDVELRLATG 362 (462)
Q Consensus 283 ~~~pvIl~GDFNs~P~s~~y~~L~~~~l~~~~~d~~~isgq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~g 362 (462)
.+.|+|||||||+.|+|++|++|++|.++....|. .. .+ ...+.
T Consensus 454 ~~~PvIlcGDFNS~P~S~vy~lLt~G~v~~~h~d~-------------~~-------------~~-~~~~~--------- 497 (606)
T PLN03144 454 ADIPMLVCGDFNSVPGSAPHCLLATGKVDPLHPDL-------------AV-------------DP-LGILR--------- 497 (606)
T ss_pred CCCceEEeccCCCCCCChhhhhhhcCCcCCCchhh-------------cc-------------Cc-ccccc---------
Confidence 47899999999999999999999999875532211 00 00 00000
Q ss_pred CCcccccccCCCcccccCCC---CCCCC------CC-C-CCCCCccccccCCCCcceeEEEEeCC-ceeeeeccCCChhh
Q 012486 363 CEGVTELQHQLNLCSAYFGI---PGSHR------TR-D-NLGEPLATSYHSKFMGTVDYIWHTEE-LVPVRVLETLPVNI 430 (462)
Q Consensus 363 ~~~~~~~~h~~~l~saY~~~---~~~~~------~~-~-~~~ep~fT~~~~~f~~~LDYIf~s~~-l~~v~~l~~~~~~~ 430 (462)
....+.|+++|.|||..+ .|... .| | ..+||.||||+.+|.+|||||||+++ +.+.++|+.++.++
T Consensus 498 --~~~~l~H~~~L~SAY~~~~~~~g~~~~~~~~~~r~~~~~geP~fTNyt~~F~gtlDYIfys~~~L~v~~vL~lp~e~~ 575 (606)
T PLN03144 498 --PASKLTHQLPLVSAYSSFARMPGSGSGLEQQRRRMDPATNEPLFTNCTRDFIGTLDYIFYTADSLTVESLLELLDEES 575 (606)
T ss_pred --ccccccCCCcccchhhhhccccccccchhhhhhccccccCCCCceeecCCcceeEEEEEEcCCCceEEeecCCCCHHH
Confidence 023578999999999876 22110 01 1 25799999999999999999999974 67778999988899
Q ss_pred hccCCCCCCCCCCCcchhhccEEEEEeC
Q 012486 431 LRRNGGLPSERWGSDHLALVCELAFANN 458 (462)
Q Consensus 431 ~~~~~~lPn~~~pSDHlpl~a~f~~~~~ 458 (462)
+....||||..||||||||+|+|+|++.
T Consensus 576 l~~~~gLPn~~~PSDHI~L~AeF~~~~~ 603 (606)
T PLN03144 576 LRKDTALPSPEWSSDHIALLAEFRCKPR 603 (606)
T ss_pred hcccCCCCCCCCCCccccEeEEEEeccC
Confidence 9888999999999999999999999874
No 2
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription]
Probab=100.00 E-value=4.6e-49 Score=395.78 Aligned_cols=339 Identities=30% Similarity=0.476 Sum_probs=248.7
Q ss_pred CeeEEEEcccCcccccCcC-CCCCCCCCccCCChHHHHHHHHHHHhhcCCceEeeecccC--hH-hHHHHHhhCCceEEE
Q 012486 103 DKFVVVSYNILGVENALKH-PDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDH--FD-DLDDLLQMDGFRGVY 178 (462)
Q Consensus 103 ~~~rV~SyNIl~~~~~~~~-~~~y~~~~~~~l~w~~R~~~I~~~I~~~~pDIIcLQEvd~--~~-~l~~~L~~~gY~~~~ 178 (462)
-.|+||||||||+.+.... +.+|+ |+...|+|.+|.+.|+.||..++|||||||||+. +. .+++.+..+||.++|
T Consensus 115 f~ftvmSYNILAQ~l~~~~~r~~~~-~s~~~L~W~~R~~~Ll~EL~~~dpDIlCLQEVq~d~~~~~~~~~~~~lGy~~~~ 193 (495)
T KOG2338|consen 115 FDFTVMSYNILAQDLLRDIRRLYFP-ESGPALKWLRRSQNLLNELKHYDPDVLCLQEVQEDHYPEFWQPLLGKLGYTGFF 193 (495)
T ss_pred cceEEEEehHhHHHHHHHhHHhhcc-CChhhcchhHHhHHHHHHHhhcCCCeeeehhhhhhhhHHHHHHHHhhcCceEEE
Confidence 4899999999999875433 45566 9999999999999999999999999999999975 43 357888899999999
Q ss_pred ecCCCCCCceeEEEEccCCceeeeeeeeeecccC----CCCceeEEEEEEechhhhhhhhhcccccccCCCEEEEEeeCC
Q 012486 179 KARTGDANDGCAIFWKEKLFTLLHQENIEFQNFG----LRHNVAQLCVLKMNQSLLESAEESSLSMVSQSQSLVVGNIHV 254 (462)
Q Consensus 179 ~~~~~~~~~G~aI~~r~srf~l~~~~~i~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~g~~l~V~ntHL 254 (462)
+.+.+.+.+||||+|+.++|+++....+.|.+.. -++|++.++.++.+.. ...++.++|+||||
T Consensus 194 ~r~t~~KthG~ai~w~~~~F~lv~~~~l~y~~~~~~l~n~~NV~lvv~l~f~~~------------~~~sq~ilVanTHL 261 (495)
T KOG2338|consen 194 KRRTGTKTHGVAILWHSAKFKLVNHSELNYFDSGSALANRDNVGLVVSLEFRLV------------DESSQGILVANTHL 261 (495)
T ss_pred EeccCCCCceEEEEEecccceecccchhhcccccchhhcccceeEEEEEEeccc------------CcccCceEEEeeee
Confidence 8888889999999999999999999988876543 3578998888886421 12367999999999
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHhhhcC-CCCEEEcccCCCCCCchhHHHHhcCCcccccccccccccccccccccccc
Q 012486 255 LFNPNRGDIKLGQIRLFLEKAYKLSQEWG-GIPVLLAGDLNSSPNSALYQFLASSELDVCQHDRRHISGQFAKCRDIDFQ 333 (462)
Q Consensus 255 ~~~p~~~~~R~~Q~~~Ll~~l~~~~~~~~-~~pvIl~GDFNs~P~s~~y~~L~~~~l~~~~~d~~~isgq~~~~~~~~~~ 333 (462)
.|+|..+++|++|...|++.+++++.... ..|+|+|||||+.|++++|.+|+.+.+.+.+.++..++.-. +..+...
T Consensus 262 l~np~~~~vrL~Q~~iiL~~~~~~~~~~~~~~pi~l~GDfNt~p~~~~y~fl~~~~l~~~~~~~~~~e~s~--~~~~~~~ 339 (495)
T KOG2338|consen 262 LFNPSRSDVRLAQVYIILAELEKMSKSSKSHWPIFLCGDFNTEPDSPPYLFLTSGPLIYDGRAAHTIEDSH--RYVFSES 339 (495)
T ss_pred eecCcccchhhHHHHHHHHHHHHHHhhcccCCCeEEecCCCCCCCCCcchhhhcCCceecccccccccccc--ccccccc
Confidence 99999999999999999999999876542 67999999999999999999999999987766555222110 0001100
Q ss_pred ---ccCCCccccc--cccC----cccccchhhHhhhcCCCc----ccccccC-CC-cccccCCCCCCCCCCC---CCCCC
Q 012486 334 ---KRNSTSDWIS--ISRP----LLYQWTDVELRLATGCEG----VTELQHQ-LN-LCSAYFGIPGSHRTRD---NLGEP 395 (462)
Q Consensus 334 ---~~~~~~~~~~--~~~~----~~~~~~~~e~~~~~g~~~----~~~~~h~-~~-l~saY~~~~~~~~~~~---~~~ep 395 (462)
.....+.|.+ .+++ ...++++.|...++|... .....|. +. ..+.|.+..|...+++ ..|||
T Consensus 340 ~~ge~g~d~~~~~~~~s~~k~~~~~~s~~~~e~~t~~g~~~~~~~~~~~~h~~~~~~~s~~s~g~~~~~~~~~~~~~gep 419 (495)
T KOG2338|consen 340 RLGEEGEDDEEESAAFSRGKGQLSQASIPKPEIFTATGDKNHLVELTYSEHESLKVNVSLYSHGYGLVHTENAWLDRGEP 419 (495)
T ss_pred ccCcccccchhhhhhhccCccccccccCCCccccccccccchhHHHHHHHhhhhhcccceeeccccccchhhccccCCCc
Confidence 0000111211 1111 123344555544544321 0111111 11 2244455444444443 26899
Q ss_pred ccccccCCCCcceeEEEEeCC-------------ceee-eeccCCChhhhccCCCCCCCCCCCcchhhccEEEEE
Q 012486 396 LATSYHSKFMGTVDYIWHTEE-------------LVPV-RVLETLPVNILRRNGGLPSERWGSDHLALVCELAFA 456 (462)
Q Consensus 396 ~fT~~~~~f~~~LDYIf~s~~-------------l~~v-~~l~~~~~~~~~~~~~lPn~~~pSDHlpl~a~f~~~ 456 (462)
.+|||...++|++||||++++ ...+ ..|.++...++.++...|+..|+|||++|+|+|.+.
T Consensus 420 ~vt~~~~~~~g~~dyif~~~~~~~~~~~~~~~~~~ikl~~~l~ip~~~e~~k~~~p~~~~~~SDH~aL~~~~~~~ 494 (495)
T KOG2338|consen 420 GVTNYALTWKGTLDYIFYSPGDCKQSNREFEEDEAIKLKGLLRIPSPQEMWKAGQPPNGRYGSDHIALVAQFSLV 494 (495)
T ss_pred ceecHHhhhccceeeEEeccCcccccchhhhcccceeEEEEecCCCHHHhhccCCCCCCCCcccceEeeEeeEee
Confidence 999999999999999999976 3333 456666677888888899999999999999999874
No 3
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]
Probab=100.00 E-value=3.4e-44 Score=347.17 Aligned_cols=290 Identities=31% Similarity=0.483 Sum_probs=216.8
Q ss_pred eeEEEEcccCcccccCcCCCCCCCCCccCCChHHHHHHHHHHHhhcCCceEeeecccC--hHh-HHHHHhhCCceEEEec
Q 012486 104 KFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDH--FDD-LDDLLQMDGFRGVYKA 180 (462)
Q Consensus 104 ~~rV~SyNIl~~~~~~~~~~~y~~~~~~~l~w~~R~~~I~~~I~~~~pDIIcLQEvd~--~~~-l~~~L~~~gY~~~~~~ 180 (462)
.|+|||||+|++.|+. +++|++. +++++|.+|++.|++||..|+|||+|||||+. |++ +++.|...||.++|..
T Consensus 30 ~ftimTYN~Laq~y~~--r~~y~~s-~~aL~W~~R~~~L~~EL~~Yn~Di~CLQEvd~~~~~~fw~~~l~~~gY~~if~~ 106 (378)
T COG5239 30 DFTIMTYNVLAQTYAT--RKMYPYS-GWALKWSYRSRLLLQELLYYNADILCLQEVDAEDFEDFWKDQLGKLGYDGIFIP 106 (378)
T ss_pred eeEEEehhhhhhhhcc--ccccCCc-hhhhhhHHHHHHHHHHHhccCCceeeeehhhhhHHHHHHHHHhcccccceEEec
Confidence 7999999999999985 7899997 89999999999999999999999999999985 565 4899999999999977
Q ss_pred CCC----------CCCceeEEEEcc----CCceeeeeeeeeeccc-----------------CCCCceeEEEEEEechhh
Q 012486 181 RTG----------DANDGCAIFWKE----KLFTLLHQENIEFQNF-----------------GLRHNVAQLCVLKMNQSL 229 (462)
Q Consensus 181 ~~~----------~~~~G~aI~~r~----srf~l~~~~~i~~~~~-----------------~~~~~~~~~~~l~~~~~~ 229 (462)
+.+ ...+||+|||++ ||+-++-.....|... ...++++..|.+-
T Consensus 107 k~~k~~~m~~~d~t~~dGc~if~k~~~~~sk~~li~~~~~~f~~p~~~~er~r~t~~~lnri~e~~~~~w~~l~~----- 181 (378)
T COG5239 107 KERKVKWMIDYDTTKVDGCAIFLKRFIDSSKLGLILAVTHLFWHPYGYYERFRQTYILLNRIGEKDNIAWVCLFV----- 181 (378)
T ss_pred CCCcccccccccccccceEEEEEEeccccchhhhhhhhhHhhcccceeehhhhHHHHHHHHHhhhhhcchhheee-----
Confidence 654 257899999998 5544433322222211 1123333111111
Q ss_pred hhhhhhcccccccCCCEEEEEeeCCCCCCCCchhHHHHHHHHHHHHHHHhhhc-------------CCCCEEEcccCCCC
Q 012486 230 LESAEESSLSMVSQSQSLVVGNIHVLFNPNRGDIKLGQIRLFLEKAYKLSQEW-------------GGIPVLLAGDLNSS 296 (462)
Q Consensus 230 ~~~~~~~~l~~~~~g~~l~V~ntHL~~~p~~~~~R~~Q~~~Ll~~l~~~~~~~-------------~~~pvIl~GDFNs~ 296 (462)
.+..+.+|..++|+|||+.|+|...++++.|..++++.+++...+. +..++.+|||||+.
T Consensus 182 -------~l~n~e~gd~~~va~Th~~w~~~~~dvk~iq~s~l~~~~k~~~~e~~~~d~~~~d~k~~~~~~~l~~gd~ns~ 254 (378)
T COG5239 182 -------GLFNKEPGDTPYVANTHLPWDPKYRDVKLIQCSLLYRELKKVLKEELNDDKEEGDIKSYPEVDILITGDFNSL 254 (378)
T ss_pred -------eeccCCCCCceeEEeccccccCCCCchheehhhHHHHHHHHHhhhcCCcchhccccccCcccccccCCCccce
Confidence 1234567999999999999999999999999999998887665321 23478999999999
Q ss_pred CCchhHHHHhcCCccccccccccccccccccccccccccCCCccccccccCcccccchhhHhhhcCCCcccccccCCCcc
Q 012486 297 PNSALYQFLASSELDVCQHDRRHISGQFAKCRDIDFQKRNSTSDWISISRPLLYQWTDVELRLATGCEGVTELQHQLNLC 376 (462)
Q Consensus 297 P~s~~y~~L~~~~l~~~~~d~~~isgq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~g~~~~~~~~h~~~l~ 376 (462)
..|.+|.+|.++.+..... . ..+++. +. .......|+.++.
T Consensus 255 ~~s~vy~~l~~~~~q~H~~----~-----~~~~~~---------------------------ly---svg~~~~h~~n~~ 295 (378)
T COG5239 255 RASLVYKFLVTSQIQLHES----L-----NGRDFS---------------------------LY---SVGYKFVHPENLK 295 (378)
T ss_pred ecceehhhhhhHHHHhhhc----c-----cccchh---------------------------hh---cccccccChhhcc
Confidence 9999999999854322100 0 000000 00 0002345666666
Q ss_pred cccCCCCCCCCCCCCCCCCccccccCCCCcceeEEEEeCC--ceeeeeccCCChhhhccCCCCCCCCCCCcchhhccEEE
Q 012486 377 SAYFGIPGSHRTRDNLGEPLATSYHSKFMGTVDYIWHTEE--LVPVRVLETLPVNILRRNGGLPSERWGSDHLALVCELA 454 (462)
Q Consensus 377 saY~~~~~~~~~~~~~~ep~fT~~~~~f~~~LDYIf~s~~--l~~v~~l~~~~~~~~~~~~~lPn~~~pSDHlpl~a~f~ 454 (462)
|.+ ..++|.||||+++|+|.||||||..+ +..+..|+.+..+...+..|+||..+||||+||.|+|.
T Consensus 296 ~~~-----------~~~~~~fTN~t~~~kG~iDYIfy~~~~~~~~~~~l~~ve~e~~~k~~G~pn~~~pSdhipl~~ef~ 364 (378)
T COG5239 296 SDN-----------SKGELGFTNWTPGFKGVIDYIFYHGGLLTRQTGLLGVVEGEYASKVIGLPNMPFPSDHIPLLAEFA 364 (378)
T ss_pred cCC-----------CcCCcccccccccccceeEEEEEecCcceeeeccccccccchhhhhcccCCCCCccccccchhccc
Confidence 633 23799999999999999999999987 55566777777777788899999999999999999999
Q ss_pred EEeC
Q 012486 455 FANN 458 (462)
Q Consensus 455 ~~~~ 458 (462)
+...
T Consensus 365 ~~~~ 368 (378)
T COG5239 365 SDHK 368 (378)
T ss_pred cccc
Confidence 8543
No 4
>KOG0620 consensus Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 and related proteins [Transcription]
Probab=100.00 E-value=9.6e-42 Score=342.15 Aligned_cols=312 Identities=34% Similarity=0.530 Sum_probs=230.9
Q ss_pred CCCceEEcCCCCCCCCCeeEEEEcccCcccccCcCCCCCCCCCccCCChHHHHHHHHHHHhhcCCceEeeecccChHhH-
Q 012486 87 DHRQWTFSSRDLSKFKDKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDHFDDL- 165 (462)
Q Consensus 87 ~~R~w~~~~~~~~~~~~~~rV~SyNIl~~~~~~~~~~~y~~~~~~~l~w~~R~~~I~~~I~~~~pDIIcLQEvd~~~~l- 165 (462)
..|+|+........+...++|+||||+++.++. ...|.+|+.+++.|.+|+..|+++|..++|||||||||++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~v~s~n~l~~~~~~--~~~~~~~~~~~~~w~~r~~~~~~ei~~~~ad~icLqev~~~~~~~ 79 (361)
T KOG0620|consen 2 FWRDLISVSGKDVPQGETFTVLSYNILSQLYAT--SKLYMYCPSWALSWEYRRQLLLEEILNYNADILCLQEVDRYHDFF 79 (361)
T ss_pred ChhheeeccCCCccCCceEEeechhhhhhhhcc--cCCCcccchhhccHHHHHHHHHHHHhCCCcceeecchhhHHHHHc
Confidence 468888887766666679999999999998774 46777999999999999999999999999999999999887765
Q ss_pred HHHHhhCCceEEEecCC------CCCCceeEEEEccCCceeeeeeeeeecccCC---------------CCceeE-EEEE
Q 012486 166 DDLLQMDGFRGVYKART------GDANDGCAIFWKEKLFTLLHQENIEFQNFGL---------------RHNVAQ-LCVL 223 (462)
Q Consensus 166 ~~~L~~~gY~~~~~~~~------~~~~~G~aI~~r~srf~l~~~~~i~~~~~~~---------------~~~~~~-~~~l 223 (462)
.+.|...||.+.|..++ .+..+|||||||+++|+++....++|+.... .++.+. +..+
T Consensus 80 ~p~l~~~gY~g~~~~k~~~~~~~~~~~dGcaiffk~s~f~li~~~~i~~n~~~~~~~~~~~~~~~~~~~~d~~~~~l~~L 159 (361)
T KOG0620|consen 80 SPELEASGYSGIFIEKTRMGEVELEKIDGCAIFFKPSLFQLIHSSAIELNQLALSRLPPNIAQLNRLTTLDNSGNKLVSL 159 (361)
T ss_pred cchhhhcCCcceeecccccchhhcccCceeeeeecchHHhhhhhhhhhhHHHHHhhcchhHHHHHhhhccccccchhhhh
Confidence 78888889999998875 5668999999999999999988888876431 122222 1111
Q ss_pred EechhhhhhhhhcccccccCCCEEE----EEeeCCCCCCCCchhHHHHHHHHHHHHH----HH---------hhhcCCCC
Q 012486 224 KMNQSLLESAEESSLSMVSQSQSLV----VGNIHVLFNPNRGDIKLGQIRLFLEKAY----KL---------SQEWGGIP 286 (462)
Q Consensus 224 ~~~~~~~~~~~~~~l~~~~~g~~l~----V~ntHL~~~p~~~~~R~~Q~~~Ll~~l~----~~---------~~~~~~~p 286 (462)
+. ..+..+. ++|+|+.|.+...++++.|+..++..+. ++ ..+....|
T Consensus 160 ---------------~~-~~~~~~~~~~~~~n~h~~~~~~~~~vkl~qv~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p 223 (361)
T KOG0620|consen 160 ---------------KA-ELGNMVSLPHLLLNTHILWDLPYEDVKLFQVLTLLLELAPLSPEILKIYREGNLATRIASFP 223 (361)
T ss_pred ---------------hh-hcCCceeeccccccceeccCCCccchHHHHHHHHhhcccccchhhhhhhccccccccccccc
Confidence 11 1122222 4899999999999999999988776632 11 11223589
Q ss_pred EEEcccCCCCCCchhHHHHhcCCccccccccccccccccccccccccccCCCccccccccCcccccchhhHhhhcCCCcc
Q 012486 287 VLLAGDLNSSPNSALYQFLASSELDVCQHDRRHISGQFAKCRDIDFQKRNSTSDWISISRPLLYQWTDVELRLATGCEGV 366 (462)
Q Consensus 287 vIl~GDFNs~P~s~~y~~L~~~~l~~~~~d~~~isgq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~g~~~~ 366 (462)
+++|||||+.|.+++|.++.+|.+.....|-+.+. . . .+. ...... ..
T Consensus 224 ~l~~gdfNs~p~~~v~~~~~~~~~~~~~~d~~~~~----------~--~----------~~~-----~~~~~~-----~~ 271 (361)
T KOG0620|consen 224 LLLCGDFNSTPLSPVYALLASGILSPEDADNKDLP----------L--M----------SAL-----GSKVNK-----SY 271 (361)
T ss_pred eeeeccccCCCCccceeecccCCCCcchhhHhhcc----------c--c----------ccc-----cccccc-----cc
Confidence 99999999999999999999987644322111100 0 0 000 000000 01
Q ss_pred cccccCCCcccccCCCCCCCCCCCCCCCCccccccCCCCcceeEEEEeCCceee-eeccCCCh-hhhccCCCCCCCCCCC
Q 012486 367 TELQHQLNLCSAYFGIPGSHRTRDNLGEPLATSYHSKFMGTVDYIWHTEELVPV-RVLETLPV-NILRRNGGLPSERWGS 444 (462)
Q Consensus 367 ~~~~h~~~l~saY~~~~~~~~~~~~~~ep~fT~~~~~f~~~LDYIf~s~~l~~v-~~l~~~~~-~~~~~~~~lPn~~~pS 444 (462)
..+.|.+.++..|.. +++.||||+.+|.|++|||||+..-..+ .+|..+++ +...+..|+||..+||
T Consensus 272 ~~~~~~~~~~~~~~~-----------~~~~ftn~t~~F~g~~DYIfys~~~~~~~~~L~~~~e~~~~~~~~~lPs~~~pS 340 (361)
T KOG0620|consen 272 EEMSHDQRRKLEYTT-----------GEPRFTNYTPGFKGTLDYIFYSKAALIVESALELLDEDELVIKVTGLPSPHHPS 340 (361)
T ss_pred cccchhhhccccccc-----------CccccccccCCccceeeEEEEccccccccccccCCChhhhhcccccCCCCCCCC
Confidence 134566666777643 5777999999999999999999854444 56666663 7788899999999999
Q ss_pred cchhhccEEEEEeCC
Q 012486 445 DHLALVCELAFANNG 459 (462)
Q Consensus 445 DHlpl~a~f~~~~~~ 459 (462)
||+||+|+|++.+.-
T Consensus 341 DHi~L~~ef~~~~~~ 355 (361)
T KOG0620|consen 341 DHIPLLAEFEIAPPK 355 (361)
T ss_pred ccchhhccccccCcc
Confidence 999999999997653
No 5
>PRK11756 exonuclease III; Provisional
Probab=99.94 E-value=4e-26 Score=223.70 Aligned_cols=253 Identities=16% Similarity=0.151 Sum_probs=144.9
Q ss_pred eEEEEcccCcccccCcCCCCCCCCCccCCChHHHHHHHHHHHhhcCCceEeeecccChH-hH-HHHHhhCCceEEEecCC
Q 012486 105 FVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDHFD-DL-DDLLQMDGFRGVYKART 182 (462)
Q Consensus 105 ~rV~SyNIl~~~~~~~~~~~y~~~~~~~l~w~~R~~~I~~~I~~~~pDIIcLQEvd~~~-~l-~~~L~~~gY~~~~~~~~ 182 (462)
||||||||... ..|...|.+.|...+||||||||+.... .+ ...+...||...+..
T Consensus 1 mri~T~Nv~g~--------------------~~~~~~i~~~i~~~~pDIi~LQE~~~~~~~~~~~~~~~~gy~~~~~~-- 58 (268)
T PRK11756 1 MKFVSFNINGL--------------------RARPHQLEAIIEKHQPDVIGLQETKVHDEMFPLEEVEALGYHVFYHG-- 58 (268)
T ss_pred CEEEEEEcCCH--------------------HHHHHHHHHHHHhcCCCEEEEEecccccccCCHHHHHhcCCEEEEeC--
Confidence 69999999852 2456779999999999999999996322 22 233456799877643
Q ss_pred CCCCceeEEEEccCCceeeeeeeeeecccCCCCceeEEEEEEechhhhhhhhhcccccccCCCEEEEEeeCCCCCCCCc-
Q 012486 183 GDANDGCAIFWKEKLFTLLHQENIEFQNFGLRHNVAQLCVLKMNQSLLESAEESSLSMVSQSQSLVVGNIHVLFNPNRG- 261 (462)
Q Consensus 183 ~~~~~G~aI~~r~srf~l~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~g~~l~V~ntHL~~~p~~~- 261 (462)
..+..|+||+ +|++++.... .+..... ...+.+...++. . ..+ .+.|+|+|+.......
T Consensus 59 ~~~~~Gvail---Sr~p~~~~~~-~~~~~~~-~~~~r~l~~~i~-------------~-~~g-~~~v~n~y~P~~~~~~~ 118 (268)
T PRK11756 59 QKGHYGVALL---SKQTPIAVRK-GFPTDDE-EAQRRIIMATIP-------------T-PNG-NLTVINGYFPQGESRDH 118 (268)
T ss_pred CCCCCEEEEE---ECCChHHeEE-CCCCccc-cccCCEEEEEEE-------------c-CCC-CEEEEEEEecCCCCCCc
Confidence 3456899999 6677654432 1211110 111222222221 1 223 4999999996432111
Q ss_pred ----hhHHHHHHHHHHHHHHHhhhcCCCCEEEcccCCCCCCchhHHHHhcCCccccccccccccccccccccccccccCC
Q 012486 262 ----DIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSPNSALYQFLASSELDVCQHDRRHISGQFAKCRDIDFQKRNS 337 (462)
Q Consensus 262 ----~~R~~Q~~~Ll~~l~~~~~~~~~~pvIl~GDFNs~P~s~~y~~L~~~~l~~~~~d~~~isgq~~~~~~~~~~~~~~ 337 (462)
..|..|+..|.+.+.++.. .+.|+|||||||..|.+.-.. .+.-+.
T Consensus 119 ~~~~~~r~~~~~~l~~~l~~~~~--~~~pvIl~GDfN~~~~~~D~~---~~~~~~------------------------- 168 (268)
T PRK11756 119 PTKFPAKRQFYQDLQNYLETELS--PDNPLLIMGDMNISPTDLDIG---IGEENR------------------------- 168 (268)
T ss_pred chhHHHHHHHHHHHHHHHHHHhc--cCCCEEEEeecccCCChhhcC---CcccCh-------------------------
Confidence 2466778888887776532 367999999999998753110 000000
Q ss_pred CccccccccCcccccchhhHhhhcCCCcccccccCCCcccccCCCCCCCCCCCCCCCCccccccCC-------CCcceeE
Q 012486 338 TSDWISISRPLLYQWTDVELRLATGCEGVTELQHQLNLCSAYFGIPGSHRTRDNLGEPLATSYHSK-------FMGTVDY 410 (462)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~e~~~~~g~~~~~~~~h~~~l~saY~~~~~~~~~~~~~~ep~fT~~~~~-------f~~~LDY 410 (462)
..| ......+++++|..... .+. ...|.++|+...+. ..+.||.|... ...+|||
T Consensus 169 -~~~---~~~~~~~~~~~er~~~~------~l~-~~~l~D~~R~~~p~-------~~~~~T~~~~~~~~~~~~~g~RIDy 230 (268)
T PRK11756 169 -KRW---LRTGKCSFLPEEREWLD------RLM-DWGLVDTFRQLNPD-------VNDRFSWFDYRSKGFDDNRGLRIDL 230 (268)
T ss_pred -HHh---cccCCccCCHHHHHHHH------HHH-hCCcEeehhhhCCC-------CCCcccCcCCcccccccCCceEEEE
Confidence 000 00000124444432110 111 23588999877541 14568765422 3469999
Q ss_pred EEEeCCcee-eeeccCCChhhhccCCCCCCCCCCCcchhhccEEEE
Q 012486 411 IWHTEELVP-VRVLETLPVNILRRNGGLPSERWGSDHLALVCELAF 455 (462)
Q Consensus 411 If~s~~l~~-v~~l~~~~~~~~~~~~~lPn~~~pSDHlpl~a~f~~ 455 (462)
||+|+.+.. +...... .+ .....+||||.||+++|++
T Consensus 231 i~~s~~~~~~v~~~~i~-~~-------~~~~~~~SDH~PV~~~~~~ 268 (268)
T PRK11756 231 ILATQPLAERCVETGID-YD-------IRGMEKPSDHAPIWATFKL 268 (268)
T ss_pred EEeCHHHHhhheEeEEe-HH-------HhCCCCCCCcccEEEEEeC
Confidence 999987652 1111111 11 1223579999999999974
No 6
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=99.93 E-value=2.2e-24 Score=212.47 Aligned_cols=173 Identities=17% Similarity=0.117 Sum_probs=118.9
Q ss_pred eEEEEcccCcccccCcCCCCCCCCCccCCChHHHHHHHHHHHhhcCCceEeeecccCh---HhHHHHHh-hCCceEEEec
Q 012486 105 FVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDHF---DDLDDLLQ-MDGFRGVYKA 180 (462)
Q Consensus 105 ~rV~SyNIl~~~~~~~~~~~y~~~~~~~l~w~~R~~~I~~~I~~~~pDIIcLQEvd~~---~~l~~~L~-~~gY~~~~~~ 180 (462)
|+||||||....+. ..+...|+.|..+|.+.+...+|||||||||... +.+...|+ .++|...+..
T Consensus 1 lkVmtyNv~~l~~~----------~~~~~g~~~R~~~i~~~~~~~~~DVV~LQEv~~~~~~~~l~~~L~~~yp~~~~~~g 70 (283)
T TIGR03395 1 IKILSHNVYMLSTN----------LYPNWGQMERADLIASADYIKNQDVVILNEAFDTSASKRLLDNLREEYPYQTDVIG 70 (283)
T ss_pred CeEEEEEeeeeccc----------ccCCccHhHHHHHHHHhhcccCCCEEEEecccchHHHHHHHHHHHhhCCceEeecc
Confidence 68999999963221 1234568999999999999999999999999652 23555563 4556543221
Q ss_pred CC--------------CCCCceeEEEEccCCceeeeeeeeeecccCCCC---ceeEEEEEEechhhhhhhhhcccccccC
Q 012486 181 RT--------------GDANDGCAIFWKEKLFTLLHQENIEFQNFGLRH---NVAQLCVLKMNQSLLESAEESSLSMVSQ 243 (462)
Q Consensus 181 ~~--------------~~~~~G~aI~~r~srf~l~~~~~i~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~l~~~~~ 243 (462)
+. .....|++|+ |||+++......|......+ +.+. +..++ ..+
T Consensus 71 ~~~~g~~~~~g~~~~~~~~~~G~~iL---Sr~Pi~~~~~~~f~~~~~~d~~~~kg~-l~a~i---------------~~~ 131 (283)
T TIGR03395 71 RSKKGWDKTLGNYSSSALEDGGVAIV---SKWPIEEKIQYIFNKGCGADNLSNKGF-AYVKI---------------NKN 131 (283)
T ss_pred cccccchhccccccccCccCCEEEEE---ECCCccccEEEEccCCCCCccccCCce-EEEEE---------------ecC
Confidence 11 1235799999 99999988776665322111 1121 11222 135
Q ss_pred CCEEEEEeeCCCCCCC------CchhHHHHHHHHHHHHHHHhhhcCCCCEEEcccCCCCCCchhHHHHhc
Q 012486 244 SQSLVVGNIHVLFNPN------RGDIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSPNSALYQFLAS 307 (462)
Q Consensus 244 g~~l~V~ntHL~~~p~------~~~~R~~Q~~~Ll~~l~~~~~~~~~~pvIl~GDFNs~P~s~~y~~L~~ 307 (462)
|+.|.|+||||.+... ....|..|++.|.+++....- ..+.|+|||||||..|++..|+.|..
T Consensus 132 g~~~~v~~THL~~~~~~~~~~~~~~~R~~Q~~~i~~~i~~~~~-~~~~pvIl~GDfN~~~~s~~~~~ml~ 200 (283)
T TIGR03395 132 GKKFHVIGTHLQAQDSMCSKLGPASIRANQLNEIQDFIDSKNI-PKDETVLIGGDLNVNKGSNEYHDMFK 200 (283)
T ss_pred CeEEEEEEeCCCCCcccccccccHHHHHHHHHHHHHHHhhccC-CCCceEEEEeeCCCCCCCHHHHHHHH
Confidence 7899999999986421 146799999999988864221 13578999999999999999988754
No 7
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=99.91 E-value=8.1e-24 Score=201.37 Aligned_cols=165 Identities=30% Similarity=0.363 Sum_probs=112.3
Q ss_pred eeEEEEcccCcccccCcCCCCCCCCCccCCChHHHHHHHHHHHhhcCCceEeeecccC--------hHhHHHHHh-h---
Q 012486 104 KFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDH--------FDDLDDLLQ-M--- 171 (462)
Q Consensus 104 ~~rV~SyNIl~~~~~~~~~~~y~~~~~~~l~w~~R~~~I~~~I~~~~pDIIcLQEvd~--------~~~l~~~L~-~--- 171 (462)
.++|+||||....- ..++..+.+++.+.|....+|||||||++. +.++...+. .
T Consensus 9 ~~~v~TyNih~~~~--------------~~d~r~~~~r~~~~i~~~~~Div~LQEv~~~~~~~r~~~~~~~~~~~~~~~~ 74 (259)
T COG3568 9 RFKVLTYNIHKGFG--------------AFDRRFDLPRIAEVIREVGADIVALQEVDGAFGRHRDGLLDLPHLLGRLGLA 74 (259)
T ss_pred eeEEEEEEEEEccC--------------ccCceecHHHHHHHHHhhccCeeeeecccccccccccccchhHHHHHHhcCC
Confidence 38999999996531 114556688999999999999999999973 122222221 1
Q ss_pred -CCceEEEe-cCCCCCCceeEEEEccCCceeeeeeeeeeccc-CCCCceeEEEEEEechhhhhhhhhcccccccCCCEEE
Q 012486 172 -DGFRGVYK-ARTGDANDGCAIFWKEKLFTLLHQENIEFQNF-GLRHNVAQLCVLKMNQSLLESAEESSLSMVSQSQSLV 248 (462)
Q Consensus 172 -~gY~~~~~-~~~~~~~~G~aI~~r~srf~l~~~~~i~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~g~~l~ 248 (462)
++|...+. ...+...+|++|+ |++++.......++.. +.....+..+.++. ..|+.|.
T Consensus 75 ~~~~~~~~~~a~~~~~~~GnaiL---S~~pi~~v~~~~lp~~~~~~~Rgal~a~~~~----------------~~g~~l~ 135 (259)
T COG3568 75 PYWWSGAAFGAVYGEGQHGNAIL---SRLPIRDVENLALPDPTGLEPRGALLAEIEL----------------PGGKPLR 135 (259)
T ss_pred ccccchhhhhhhcccceeeeEEE---ecCcccchhhccCCCCCCCCCceeEEEEEEc----------------CCCCEEE
Confidence 22222111 0124568999999 7888888888777753 33223344444442 2588999
Q ss_pred EEeeCCCCCCCCchhHHHHHHHHHHHHHHHhhhcCCCCEEEcccCCCCCCchhHHHHhcC
Q 012486 249 VGNIHVLFNPNRGDIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSPNSALYQFLASS 308 (462)
Q Consensus 249 V~ntHL~~~p~~~~~R~~Q~~~Ll~~l~~~~~~~~~~pvIl~GDFNs~P~s~~y~~L~~~ 308 (462)
|+|+||.+ ....|.+|+..|++.+. +.. ..|+|+|||||+.|+|+.|+.+...
T Consensus 136 V~~~HL~l---~~~~R~~Q~~~L~~~~~-l~~---~~p~vl~GDFN~~p~s~~yr~~~~~ 188 (259)
T COG3568 136 VINAHLGL---SEESRLRQAAALLALAG-LPA---LNPTVLMGDFNNEPGSAEYRLAARS 188 (259)
T ss_pred EEEEeccc---cHHHHHHHHHHHHhhcc-Ccc---cCceEEEccCCCCCCCccceeccCC
Confidence 99999986 56789999998888322 111 2399999999999999999665543
No 8
>PRK05421 hypothetical protein; Provisional
Probab=99.90 E-value=7.7e-23 Score=199.89 Aligned_cols=154 Identities=17% Similarity=0.166 Sum_probs=95.8
Q ss_pred CCeeEEEEcccCcccccCcCCCCCCCCCccCCChHHHHHHHHHHHhhcCCceEeeecccChHhHHHHHhhCCceEEEec-
Q 012486 102 KDKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDHFDDLDDLLQMDGFRGVYKA- 180 (462)
Q Consensus 102 ~~~~rV~SyNIl~~~~~~~~~~~y~~~~~~~l~w~~R~~~I~~~I~~~~pDIIcLQEvd~~~~l~~~L~~~gY~~~~~~- 180 (462)
+++||||||||+..... . ....++.| ..+|||||||||+.-..+...+...|+...|..
T Consensus 41 ~~~lri~t~NI~~~~~~---------------~----~~~~l~~l-~~~~DiI~LQEv~~~~~~~~~~~~~~~~~~~~~~ 100 (263)
T PRK05421 41 EERLRLLVWNIYKQQRA---------------G----WLSVLKNL-GKDADLVLLQEAQTTPELVQFATANYLAADQAPA 100 (263)
T ss_pred CCceeEEEEEccccccc---------------c----HHHHHHHh-ccCCCEEEEEecccCcchHHHhhcccchHHhccc
Confidence 36799999999965311 1 23445555 889999999999753233333333444433321
Q ss_pred -CCCCCCceeEEEEccCCceeeeeeeeeecccCCCC-ceeEEEEEEechhhhhhhhhcccccccCCCEEEEEeeCCCCCC
Q 012486 181 -RTGDANDGCAIFWKEKLFTLLHQENIEFQNFGLRH-NVAQLCVLKMNQSLLESAEESSLSMVSQSQSLVVGNIHVLFNP 258 (462)
Q Consensus 181 -~~~~~~~G~aI~~r~srf~l~~~~~i~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~l~~~~~g~~l~V~ntHL~~~p 258 (462)
....+..|+||+ ||+++.....+.......+. ....++.++. .+|+.|.|+||||.+..
T Consensus 101 ~~~~~~~~GvaiL---SR~pi~~~~~~~~~~~~~~~~r~~l~a~~~~----------------~~g~~l~v~ntHl~~~~ 161 (263)
T PRK05421 101 FVLPQHPSGVMTL---SKAHPVYCCPLREREPWLRLPKSALITEYPL----------------PNGRTLLVVNIHAINFS 161 (263)
T ss_pred cccCCCccceeEe---eecccceeeccCCCCccccCcceeEEEEEEe----------------CCCCEEEEEEECccccC
Confidence 123347899999 89998776554222111111 1223333332 24678999999997422
Q ss_pred CCchhHHHHHHHHHHHHHHHhhhcCCCCEEEcccCCCCCCc
Q 012486 259 NRGDIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSPNS 299 (462)
Q Consensus 259 ~~~~~R~~Q~~~Ll~~l~~~~~~~~~~pvIl~GDFNs~P~s 299 (462)
.....|..|+..|.+.+... ..|+|||||||+.+..
T Consensus 162 ~~~~~r~~q~~~l~~~~~~~-----~~p~Il~GDFN~~~~~ 197 (263)
T PRK05421 162 LGVDVYSKQLEPIGDQIAHH-----SGPVILAGDFNTWSRK 197 (263)
T ss_pred cChHHHHHHHHHHHHHHHhC-----CCCEEEEcccccCccc
Confidence 23456888988888776542 4699999999987653
No 9
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=99.89 E-value=2.1e-22 Score=192.25 Aligned_cols=247 Identities=19% Similarity=0.210 Sum_probs=146.8
Q ss_pred eEEEEcccCcccccCcCCCCCCCCCccCCChHHHHHHHHHHHhhcCCceEeeecccCh-HhH-HHHHhhCCceEEEecCC
Q 012486 105 FVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDHF-DDL-DDLLQMDGFRGVYKART 182 (462)
Q Consensus 105 ~rV~SyNIl~~~~~~~~~~~y~~~~~~~l~w~~R~~~I~~~I~~~~pDIIcLQEvd~~-~~l-~~~L~~~gY~~~~~~~~ 182 (462)
|||+||||.+-. .|.+.+++.|.+.+||||||||+..- ..+ ...+...||++++...-
T Consensus 1 mkI~SwNVNgiR--------------------ar~~~~~~~l~~~~pDVlclQEtK~~~~~fp~~~~~~~GY~~~~~~gq 60 (261)
T COG0708 1 MKIASWNVNGLR--------------------ARLKKLLDWLEEEQPDVLCLQETKAQDEQFPREELEALGYHHVFNHGQ 60 (261)
T ss_pred CeeEEEehhhHH--------------------HHHHHHHHHHHHhCCCEEEEEecccCcccCCHhHHhhCCceEEEecCc
Confidence 689999999753 45777999999999999999999642 234 45666789976654332
Q ss_pred CCCCceeEEEEccCCceeeeeeeeeecccCCCCceeEEEEEEechhhhhhhhhcccccccCCCEEEEEeeCCCCCCCCch
Q 012486 183 GDANDGCAIFWKEKLFTLLHQENIEFQNFGLRHNVAQLCVLKMNQSLLESAEESSLSMVSQSQSLVVGNIHVLFNPNRGD 262 (462)
Q Consensus 183 ~~~~~G~aI~~r~srf~l~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~g~~l~V~ntHL~~~p~~~~ 262 (462)
.+..|+||+. |.++.+. ..-|......+..+++..+++ .+ |.|+|..+......+.
T Consensus 61 -KgysGVails---r~~~~~v-~~g~~~~~~~d~e~R~I~a~~-----------------~~--~~v~~~Y~PnG~~~~~ 116 (261)
T COG0708 61 -KGYSGVAILS---KKPPDDV-RRGFPGEEEDDEEGRVIEAEF-----------------DG--FRVINLYFPNGSSIGL 116 (261)
T ss_pred -CCcceEEEEE---ccCchhh-hcCCCCCccccccCcEEEEEE-----------------CC--EEEEEEEcCCCCCCCC
Confidence 6789999994 4444411 111221101122355555543 12 8899988764322133
Q ss_pred h----HHHHHHHHHHHHHHHhhhcCCCCEEEcccCCCCCCchhHHHHhcCCccccccccccccccccccccccccccCCC
Q 012486 263 I----KLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSPNSALYQFLASSELDVCQHDRRHISGQFAKCRDIDFQKRNST 338 (462)
Q Consensus 263 ~----R~~Q~~~Ll~~l~~~~~~~~~~pvIl~GDFNs~P~s~~y~~L~~~~l~~~~~d~~~isgq~~~~~~~~~~~~~~~ 338 (462)
. |+.-...|.+.++++.. .+.|+|+|||||..|..- |+....
T Consensus 117 ~k~~yKl~f~~~l~~~l~~l~~--~~~~~vl~GD~NIap~~i----------Dv~~~~---------------------- 162 (261)
T COG0708 117 EKFDYKLRFLDALRNYLEELLK--KGKPVVLCGDFNIAPEEI----------DVANPK---------------------- 162 (261)
T ss_pred cchHHHHHHHHHHHHHHHHHhh--cCCCEEEecccccCCchh----------cccCch----------------------
Confidence 3 44445566666666554 258999999999998751 111000
Q ss_pred ccccccccCcccccchhhHhhhcCCCcccccccCCCcccccCCCCCCCCCCCCCCCCccccccCCCC-------cceeEE
Q 012486 339 SDWISISRPLLYQWTDVELRLATGCEGVTELQHQLNLCSAYFGIPGSHRTRDNLGEPLATSYHSKFM-------GTVDYI 411 (462)
Q Consensus 339 ~~~~~~~~~~~~~~~~~e~~~~~g~~~~~~~~h~~~l~saY~~~~~~~~~~~~~~ep~fT~~~~~f~-------~~LDYI 411 (462)
..| ..-....+++||-.... .+ ...++.++|+.+.+. ...||.|..... .+||||
T Consensus 163 ~~~---~n~~~~~f~~eeR~~~~------~l-l~~G~~D~~R~~~p~--------~~~YTwW~YR~~~~~~n~G~RID~~ 224 (261)
T COG0708 163 KRW---LNEGNSGFLPEERAWFR------RL-LNAGFVDTFRLFHPE--------PEKYTWWDYRANAARRNRGWRIDYI 224 (261)
T ss_pred hhh---hcCCCCCCCHHHHHHHH------HH-HHcchhhhhHhhCCC--------CCcccccccccchhhhcCceeEEEE
Confidence 000 00011235566544221 11 124578888887642 223999876544 599999
Q ss_pred EEeCCceee-eeccCCChhhhccCCCCCCCCCCCcchhhccEEEE
Q 012486 412 WHTEELVPV-RVLETLPVNILRRNGGLPSERWGSDHLALVCELAF 455 (462)
Q Consensus 412 f~s~~l~~v-~~l~~~~~~~~~~~~~lPn~~~pSDHlpl~a~f~~ 455 (462)
++|+.+... ... .+..+ ..| -.-||||.||+++|.+
T Consensus 225 l~S~~L~~~~~~a-~I~~~----~rg---~e~pSDHaPV~~e~~~ 261 (261)
T COG0708 225 LVSPALADRLKDA-GIDRE----VRG---WEKPSDHAPVWVELDL 261 (261)
T ss_pred EeCHHHHHHHHhc-CccHH----Hhc---CCCCCCcCcEEEEecC
Confidence 999977531 111 11111 111 1468999999999974
No 10
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=99.88 E-value=7.6e-22 Score=191.84 Aligned_cols=147 Identities=21% Similarity=0.337 Sum_probs=93.5
Q ss_pred eEEEEcccCcccccCcCCCCCCCCCccCCChHHHHHHHHHHHhhcCCceEeeecccChH-hH-HHHHhhCCceEEEecCC
Q 012486 105 FVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDHFD-DL-DDLLQMDGFRGVYKART 182 (462)
Q Consensus 105 ~rV~SyNIl~~~~~~~~~~~y~~~~~~~l~w~~R~~~I~~~I~~~~pDIIcLQEvd~~~-~l-~~~L~~~gY~~~~~~~~ 182 (462)
|||+||||.+.. .+...+.++|..++||||||||+.... .+ ...+...||..++...
T Consensus 1 mri~t~Ni~g~~--------------------~~~~~~~~~l~~~~~DIi~LQE~~~~~~~~~~~~~~~~g~~~~~~~~- 59 (254)
T TIGR00195 1 MKIISWNVNGLR--------------------ARLHKGLAWLKENQPDVLCLQETKVQDEQFPLEPFHKEGYHVFFSGQ- 59 (254)
T ss_pred CEEEEEEcCcHH--------------------HhHHHHHHHHHhcCCCEEEEEecccchhhCCHHHhhcCCcEEEEecC-
Confidence 699999998532 234458999999999999999996422 23 3445567997766543
Q ss_pred CCCCceeEEEEccCCceeeeeeeeeecccCCCCceeEEEEEEechhhhhhhhhcccccccCCCEEEEEeeCCCCCCCCc-
Q 012486 183 GDANDGCAIFWKEKLFTLLHQENIEFQNFGLRHNVAQLCVLKMNQSLLESAEESSLSMVSQSQSLVVGNIHVLFNPNRG- 261 (462)
Q Consensus 183 ~~~~~G~aI~~r~srf~l~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~g~~l~V~ntHL~~~p~~~- 261 (462)
.+..|+||++|+..+.+.. .+.... .+..+++...+. ..+.|+|||+.......
T Consensus 60 -~g~~Gvailsr~~~~~~~~--~~~~~~---~~~~~r~i~~~~-------------------~~~~l~~~~~p~~~~~~~ 114 (254)
T TIGR00195 60 -KGYSGVAIFSKEEPLSVRR--GFGVEE---EDAEGRIIMAEF-------------------DSFLVINGYFPNGSRDDS 114 (254)
T ss_pred -CCcceEEEEEcCCcceEEE--CCCCcc---cccCCCEEEEEE-------------------CCEEEEEEEccCCCCCCC
Confidence 4567999997654333321 111111 011233333332 13889999997522111
Q ss_pred ---hhHHHHHHHHHHHHHHHhhhcCCCCEEEcccCCCCCCc
Q 012486 262 ---DIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSPNS 299 (462)
Q Consensus 262 ---~~R~~Q~~~Ll~~l~~~~~~~~~~pvIl~GDFNs~P~s 299 (462)
..|..+...|.+.+..+.. .+.|+|+|||||..|.+
T Consensus 115 ~~~~~r~~~~~~l~~~~~~~~~--~~~pvIi~GDfN~~~~~ 153 (254)
T TIGR00195 115 EKLPYKLQWLEALQNYLEKLVD--KDKPVLICGDMNIAPTE 153 (254)
T ss_pred ccHHHHHHHHHHHHHHHHHHHh--cCCcEEEEeecccCCCh
Confidence 2366667777777776543 25799999999999875
No 11
>PTZ00297 pantothenate kinase; Provisional
Probab=99.86 E-value=9.4e-21 Score=219.07 Aligned_cols=176 Identities=19% Similarity=0.200 Sum_probs=110.6
Q ss_pred CCeeEEEEcccCcccccCcCCCCCCCCCccCCChHHHHHHHHHHHhh-cCCceEeeecccChH--------------hHH
Q 012486 102 KDKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSS-YNASILCLQEVDHFD--------------DLD 166 (462)
Q Consensus 102 ~~~~rV~SyNIl~~~~~~~~~~~y~~~~~~~l~w~~R~~~I~~~I~~-~~pDIIcLQEvd~~~--------------~l~ 166 (462)
...||||||||+... .+.-.|. ..+|...|.. .++||||||||.... .+.
T Consensus 8 ~~~l~VlTyNv~~~~-------------~~~~~~~--~~ri~~~i~~l~~~DIv~lQEvf~~~~~~~~~~~~~~~~~~~~ 72 (1452)
T PTZ00297 8 CAQARVLSYNFNILP-------------RGCGGFQ--HERIETFLASVDAYDVVLLQEVYAASVLPYFLQKQLCFQKMLV 72 (1452)
T ss_pred CCceEEEEEEccccC-------------CCccccc--HHHHHHHHHhccCCCEEEEecccccccccccccccchhhHHHH
Confidence 357999999987431 0111222 3566667777 478999999996421 135
Q ss_pred HHHhhCCceEEEecCCC---C-------CCceeEEEEccCCceeeeeeeeeecccCCCC---cee-EEEEEEechhhhhh
Q 012486 167 DLLQMDGFRGVYKARTG---D-------ANDGCAIFWKEKLFTLLHQENIEFQNFGLRH---NVA-QLCVLKMNQSLLES 232 (462)
Q Consensus 167 ~~L~~~gY~~~~~~~~~---~-------~~~G~aI~~r~srf~l~~~~~i~~~~~~~~~---~~~-~~~~l~~~~~~~~~ 232 (462)
..+++.||..+...+.. . ...|+||+ ||||+++...+.++.....+ +.+ +.+.+.+..
T Consensus 73 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~AIL---SR~PI~~~~~~~l~~~~~~~~~~~RG~L~a~I~vp~----- 144 (1452)
T PTZ00297 73 DELKARGFHHYVISKQPSYLTMLRYNVCSDNGLIIA---SRFPIWQRGSYTFRNHERGEQSVRRGCLFAEVEVPL----- 144 (1452)
T ss_pred HHHHhcCCceeEeecCccccccccCccccCCEEEEE---ECCChhhceeeecCcccccccccccceEEEEEEccc-----
Confidence 66677788654332221 1 46899999 99999999998887533211 122 233333210
Q ss_pred hhhcccccccCCCEEEEEeeCCCCCCCCchhHHHHHHHHHHHHHH-Hhh------hcCCCCEEEcccCCCC----C----
Q 012486 233 AEESSLSMVSQSQSLVVGNIHVLFNPNRGDIKLGQIRLFLEKAYK-LSQ------EWGGIPVLLAGDLNSS----P---- 297 (462)
Q Consensus 233 ~~~~~l~~~~~g~~l~V~ntHL~~~p~~~~~R~~Q~~~Ll~~l~~-~~~------~~~~~pvIl~GDFNs~----P---- 297 (462)
....++.+.|+||||.+... ...|..|++.+.++++. +.+ .....|+|||||||.. +
T Consensus 145 -------~~g~~~~v~v~~tHL~~~~~-~~~R~~Q~~ql~~~i~~~i~~~~~~~~~~~~~PvILaGDFN~~~~~~~~~~~ 216 (1452)
T PTZ00297 145 -------AEGGSQRIVFFNVHLRQEDS-LPSTSSQVQETRRFVESVIANVYEQNNDGAEIPFVIAGDFNINGIDPHNGGH 216 (1452)
T ss_pred -------cCCCCceEEEEEeCCCCCCC-cchHHHHHHHHHHHHHHhhhhhcccccCCCCCCEEEEeeCCCccccccccCC
Confidence 00123589999999997542 34688898888887765 311 0135699999999965 2
Q ss_pred CchhHHHHhcC
Q 012486 298 NSALYQFLASS 308 (462)
Q Consensus 298 ~s~~y~~L~~~ 308 (462)
.+..|+.|.+.
T Consensus 217 ~s~e~~~ml~~ 227 (1452)
T PTZ00297 217 PTKRFQELLNE 227 (1452)
T ss_pred ccHHHHHHHHH
Confidence 44667666543
No 12
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.86 E-value=1e-20 Score=183.42 Aligned_cols=148 Identities=20% Similarity=0.329 Sum_probs=91.1
Q ss_pred eEEEEcccCcccccCcCCCCCCCCCccCCChHHHHHHH-HHHHhhcCCceEeeecccCh-HhH-HHHHhhCCceEEEecC
Q 012486 105 FVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLI-REEMSSYNASILCLQEVDHF-DDL-DDLLQMDGFRGVYKAR 181 (462)
Q Consensus 105 ~rV~SyNIl~~~~~~~~~~~y~~~~~~~l~w~~R~~~I-~~~I~~~~pDIIcLQEvd~~-~~l-~~~L~~~gY~~~~~~~ 181 (462)
|||+||||.... .+.+.+ ++.|..++||||||||++.. ..+ ...+...||..++...
T Consensus 1 lri~t~Nv~g~~--------------------~~~~~~~~~~l~~~~~DIv~LQE~~~~~~~~~~~~~~~~g~~~~~~~~ 60 (255)
T TIGR00633 1 MKIISWNVNGLR--------------------ARLHKLFLDWLKEEQPDVLCLQETKVADEQFPAELFEELGYHVFFHGA 60 (255)
T ss_pred CEEEEEecccHH--------------------HHhhccHHHHHHhcCCCEEEEEeccCchhhCCHhHhccCCceEEEeec
Confidence 699999998642 123445 89999999999999999753 233 2334567898777554
Q ss_pred CCCCCceeEEEEccCCceeeeeee-eeecccCCCCceeEEEEEEechhhhhhhhhcccccccCCCEEEEEeeCCCCCCCC
Q 012486 182 TGDANDGCAIFWKEKLFTLLHQEN-IEFQNFGLRHNVAQLCVLKMNQSLLESAEESSLSMVSQSQSLVVGNIHVLFNPNR 260 (462)
Q Consensus 182 ~~~~~~G~aI~~r~srf~l~~~~~-i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~g~~l~V~ntHL~~~p~~ 260 (462)
...+..|+||++| +++..... +.... .+..++.+.++ .+.+.|+++|+......
T Consensus 61 ~~~~~~G~ailsr---~~~~~~~~~~~~~~---~~~~~r~l~~~-------------------~~~~~i~~vy~p~~~~~ 115 (255)
T TIGR00633 61 KSKGYSGVAILSK---VEPLDVRYGFGGEE---HDEEGRVITAE-------------------FDGFTVVNVYVPNGGSR 115 (255)
T ss_pred ccCCcceEEEEEc---CCcceEEECCCCCc---ccCCCcEEEEE-------------------ECCEEEEEEEccCCCCC
Confidence 4335689999955 44433221 11111 11122222222 23589999999753312
Q ss_pred c----hhHHHHHHHHHHHHHHHhhhcCCCCEEEcccCCCCCCc
Q 012486 261 G----DIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSPNS 299 (462)
Q Consensus 261 ~----~~R~~Q~~~Ll~~l~~~~~~~~~~pvIl~GDFNs~P~s 299 (462)
+ ..|..+...+.+.+.+... .+.|+|+|||||+.+..
T Consensus 116 ~~~~~~~r~~~~~~l~~~~~~~~~--~~~~~Il~GDFN~~~~~ 156 (255)
T TIGR00633 116 GLERLEYKLQFWDALFQYYEKELD--AGKPVIICGDMNVAHTE 156 (255)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHh--cCCcEEEEeecccCCCh
Confidence 2 2355566666665543322 35799999999998864
No 13
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=99.82 E-value=1.5e-19 Score=175.07 Aligned_cols=236 Identities=17% Similarity=0.191 Sum_probs=135.1
Q ss_pred eEEEEcccCcccccCcCCCCCCCCCccCCChHHHH-HHHHHHHhhcCCceEeeecccCh-HhHHHHHhhCCceEEEecCC
Q 012486 105 FVVVSYNILGVENALKHPDLYDKVPPKFLKWERRK-KLIREEMSSYNASILCLQEVDHF-DDLDDLLQMDGFRGVYKART 182 (462)
Q Consensus 105 ~rV~SyNIl~~~~~~~~~~~y~~~~~~~l~w~~R~-~~I~~~I~~~~pDIIcLQEvd~~-~~l~~~L~~~gY~~~~~~~~ 182 (462)
|||+||||.+.. .|. ..+.+.|...+||||||||+..- ..+ .+...||..++....
T Consensus 1 mki~swNVNgir--------------------~~~~~~~~~~l~~~~~DIiclQEtK~~~~~~--~~~~~gY~~~~~~~~ 58 (250)
T PRK13911 1 MKLISWNVNGLR--------------------ACMTKGFMDFFNSVDADVFCIQESKMQQEQN--TFEFKGYFDFWNCAI 58 (250)
T ss_pred CEEEEEEeCChh--------------------HhhhhhHHHHHHhcCCCEEEEEeeccccccc--ccccCCceEEEEecc
Confidence 689999999753 122 34888999999999999999631 222 134568987664333
Q ss_pred CCCCceeEEEEccCCceeeeeeeeeecccCCCCceeEEEEEEechhhhhhhhhcccccccCCCEEEEEeeCCCCCCCCch
Q 012486 183 GDANDGCAIFWKEKLFTLLHQENIEFQNFGLRHNVAQLCVLKMNQSLLESAEESSLSMVSQSQSLVVGNIHVLFNPNRGD 262 (462)
Q Consensus 183 ~~~~~G~aI~~r~srf~l~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~g~~l~V~ntHL~~~p~~~~ 262 (462)
..+..|+||++|.....+. ..+... ..+..+++...++ + .|.|+|+...... .+.
T Consensus 59 ~kgy~GVAi~~k~~~~~v~----~~~~~~-~~d~eGR~I~~~~------------------~-~~~l~nvY~Pn~~-~~~ 113 (250)
T PRK13911 59 KKGYSGVVTFTKKEPLSVS----YGINIE-EHDKEGRVITCEF------------------E-SFYLVNVYTPNSQ-QAL 113 (250)
T ss_pred cCccceEEEEEcCCchheE----EcCCCC-cccccCCEEEEEE------------------C-CEEEEEEEecCCC-CCC
Confidence 4567899999775422221 111110 1122355544442 2 4999999886422 222
Q ss_pred hHHHH----HHHHHHHHHHHhhhcCCCCEEEcccCCCCCCchhHHHHhcCCccccccccccccccccccccccccccCCC
Q 012486 263 IKLGQ----IRLFLEKAYKLSQEWGGIPVLLAGDLNSSPNSALYQFLASSELDVCQHDRRHISGQFAKCRDIDFQKRNST 338 (462)
Q Consensus 263 ~R~~Q----~~~Ll~~l~~~~~~~~~~pvIl~GDFNs~P~s~~y~~L~~~~l~~~~~d~~~isgq~~~~~~~~~~~~~~~ 338 (462)
.|+.+ ...+.+.++.+. .+.|+|+|||||..+... |.. +.....
T Consensus 114 ~r~~~K~~~~~~~~~~l~~l~---~~~~~Ii~GD~Nva~~~~----------D~~--~~~~~~----------------- 161 (250)
T PRK13911 114 SRLSYRMSWEVEFKKFLKALE---LKKPVIVCGDLNVAHNEI----------DLE--NPKTNR----------------- 161 (250)
T ss_pred cchHHHHHHHHHHHHHHHhcc---cCCCEEEEccccCCCChh----------hcc--ChhhcC-----------------
Confidence 23322 334445555442 257999999999888741 111 000000
Q ss_pred ccccccccCcccccchhhHhhhcCCCcccccccCCCcccccCCCCCCCCCCCCCCCCccccccCC-------CCcceeEE
Q 012486 339 SDWISISRPLLYQWTDVELRLATGCEGVTELQHQLNLCSAYFGIPGSHRTRDNLGEPLATSYHSK-------FMGTVDYI 411 (462)
Q Consensus 339 ~~~~~~~~~~~~~~~~~e~~~~~g~~~~~~~~h~~~l~saY~~~~~~~~~~~~~~ep~fT~~~~~-------f~~~LDYI 411 (462)
...+++++|-..... .+. ..|.++|+..++. .+-.||.|... ...+||||
T Consensus 162 ---------~~~gf~~~er~~f~~-----~l~--~gl~D~~R~~~p~-------~~~~yTww~~~~~~~~~n~g~RIDyi 218 (250)
T PRK13911 162 ---------KNAGFSDEERGKFSE-----LLN--AGFIDTFRYFYPN-------KEKAYTWWSYMQQARDKNIGWRIDYF 218 (250)
T ss_pred ---------CCCCcCHHHHHHHHH-----HHh--cCCeehhhhhCCC-------CCCCCccCCCcCCccccCCcceEEEE
Confidence 012356666432211 112 3688888876542 12359987644 34699999
Q ss_pred EEeCCceeeeeccCCChhhhccCCCCCCCCCCCcchhhccEE
Q 012486 412 WHTEELVPVRVLETLPVNILRRNGGLPSERWGSDHLALVCEL 453 (462)
Q Consensus 412 f~s~~l~~v~~l~~~~~~~~~~~~~lPn~~~pSDHlpl~a~f 453 (462)
|+|+++...-. . .. +....++|||.||+++|
T Consensus 219 lvs~~~~~~~~-~----~~------i~~~~~~SDH~Pv~~~~ 249 (250)
T PRK13911 219 LCSNPLKTRLK-D----AL------IYKDILGSDHCPVGLEL 249 (250)
T ss_pred EEChHHhhhEE-E----EE------ECCCCCCCCcccEEEEe
Confidence 99987653110 0 00 11134579999999987
No 14
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms]
Probab=99.82 E-value=8.7e-20 Score=177.04 Aligned_cols=171 Identities=24% Similarity=0.288 Sum_probs=124.4
Q ss_pred CCeeEEEEcccCcccccCcCCCCCCCCCccCCChHHHHHHHHHHHhhcCCceEeeecccChHhHH---HHHh-hCCceEE
Q 012486 102 KDKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDHFDDLD---DLLQ-MDGFRGV 177 (462)
Q Consensus 102 ~~~~rV~SyNIl~~~~~~~~~~~y~~~~~~~l~w~~R~~~I~~~I~~~~pDIIcLQEvd~~~~l~---~~L~-~~gY~~~ 177 (462)
.-.+||+|.|+++..+.+.. -..|...|.+++.+...||+.||||+..++++ +... .+.|...
T Consensus 6 a~~lriltlN~Wgip~~Sk~-------------R~~Rm~~~g~~l~~E~yDiv~LQEvWs~eD~~~L~~~~ss~yPysh~ 72 (422)
T KOG3873|consen 6 ALELRILTLNIWGIPYVSKD-------------RRHRMDAIGDELASEKYDIVSLQEVWSQEDFEYLQSGCSSVYPYSHY 72 (422)
T ss_pred hheeeeeEeeccccccccch-------------hHHHHHHHhHHHhhcccchhhHHHHHHHHHHHHHHHhccccCchHHh
Confidence 35799999999987665421 23678889999999999999999998766653 3232 3566666
Q ss_pred EecCCCCCCceeEEEEccCCceeeeeeeeeecccCC-----C------CceeEEEEEEechhhhhhhhhcccccccCCCE
Q 012486 178 YKARTGDANDGCAIFWKEKLFTLLHQENIEFQNFGL-----R------HNVAQLCVLKMNQSLLESAEESSLSMVSQSQS 246 (462)
Q Consensus 178 ~~~~~~~~~~G~aI~~r~srf~l~~~~~i~~~~~~~-----~------~~~~~~~~l~~~~~~~~~~~~~~l~~~~~g~~ 246 (462)
|. ++-.+.|+++| ||+||++.-...|+-.+. + ..++ ++++. .+|+.
T Consensus 73 FH--SGimGaGL~vf---SK~PI~~t~~~~y~lNG~p~~i~rGDWf~GK~Vg-l~~l~-----------------~~g~~ 129 (422)
T KOG3873|consen 73 FH--SGIMGAGLCVF---SKHPILETLFHRYSLNGYPHAIHRGDWFGGKGVG-LTVLL-----------------VGGRM 129 (422)
T ss_pred hh--cccccCceEEe---ecCchhhhhhhccccCCccceeeeccccccceeE-EEEEe-----------------eCCEE
Confidence 64 34458899999 999999887665554331 1 1122 22222 35789
Q ss_pred EEEEeeCCCCCCCC-ch----hHHHHHHHHHHHHHHHhhhcCCCCEEEcccCCCCCCchhHHHHhcCCc
Q 012486 247 LVVGNIHVLFNPNR-GD----IKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSPNSALYQFLASSEL 310 (462)
Q Consensus 247 l~V~ntHL~~~p~~-~~----~R~~Q~~~Ll~~l~~~~~~~~~~pvIl~GDFNs~P~s~~y~~L~~~~l 310 (462)
+.++||||.+.... +| -|..|+-.+.+.++...+ +..-||+|||||+.|.+-.+++|++.++
T Consensus 130 v~~yntHLHAeY~rq~D~YL~HR~~QAwdlaqfi~~t~q--~~~vVI~~GDLN~~P~dl~~~ll~~a~l 196 (422)
T KOG3873|consen 130 VNLYNTHLHAEYDRQNDEYLCHRVAQAWDLAQFIRATRQ--NADVVILAGDLNMQPQDLGHKLLLSAGL 196 (422)
T ss_pred eeeeehhccccccccCchhhhHHHHHHHHHHHHHHHHhc--CCcEEEEecCCCCCccccceeeeeccch
Confidence 99999999863222 23 499999999999987765 3677999999999999999999986554
No 15
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=99.81 E-value=7.4e-19 Score=171.37 Aligned_cols=160 Identities=14% Similarity=0.232 Sum_probs=105.7
Q ss_pred CeeEEEEcccCcccccCcCCCCCCCCCccCCChHHHHHHHHHHHhhcCCceEeeeccc--ChHhHHHHH---hh---CCc
Q 012486 103 DKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVD--HFDDLDDLL---QM---DGF 174 (462)
Q Consensus 103 ~~~rV~SyNIl~~~~~~~~~~~y~~~~~~~l~w~~R~~~I~~~I~~~~pDIIcLQEvd--~~~~l~~~L---~~---~gY 174 (462)
..|+||||||.... .....|..|++.|++.|. ++||||+|||. +...+...| .+ .+|
T Consensus 16 ~~l~I~SfNIr~fg-------------d~k~~~~~r~~~i~~il~--~~DIiglQEV~d~q~~~l~~ll~~Ln~~~~~~Y 80 (276)
T smart00476 16 ASLRICAFNIQSFG-------------DSKMSNATLMSIIVKILS--RYDIALVQEVRDSDLSAVPKLMDQLNSDSPNTY 80 (276)
T ss_pred CcEEEEEEECcccC-------------CccccHHHHHHHHHHHhc--cCCEEEEEEeecchhHHHHHHHHHHhhcCCCCc
Confidence 46999999999431 234579999999999998 88999999994 334444333 32 256
Q ss_pred eEEEecCCC--CCCceeEEEEccCCceeeeeeeeeeccc--CCCCc---eeEEEEEEechhhhhhhhhcccccccCCCEE
Q 012486 175 RGVYKARTG--DANDGCAIFWKEKLFTLLHQENIEFQNF--GLRHN---VAQLCVLKMNQSLLESAEESSLSMVSQSQSL 247 (462)
Q Consensus 175 ~~~~~~~~~--~~~~G~aI~~r~srf~l~~~~~i~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~~~l~~~~~g~~l 247 (462)
..+...+.+ ..++.+|+|||++++++++...+ .+. ++.+. .+.++.++... ..++.|
T Consensus 81 ~~v~s~r~gr~~~~E~~a~~Yr~drv~v~~~~~f--~d~~~~~~~~F~ReP~~~~F~~~~--------------~~~~~F 144 (276)
T smart00476 81 SYVSSEPLGRNSYKEQYLFLYRSDLVSVLDSYLY--DDGCECGNDVFSREPFVVKFSSPS--------------TAVKEF 144 (276)
T ss_pred eEEecCCCCCCCCCEEEEEEEecceEEEccccee--cCCCCCccccccccceEEEEEeCC--------------CCCccE
Confidence 655544432 34688999999999999987654 331 11111 23333333211 135789
Q ss_pred EEEeeCCCCCCCCchhHHHHHHHHHHHHHHHhhhcCCCCEEEcccCCCCCC
Q 012486 248 VVGNIHVLFNPNRGDIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSPN 298 (462)
Q Consensus 248 ~V~ntHL~~~p~~~~~R~~Q~~~Ll~~l~~~~~~~~~~pvIl~GDFNs~P~ 298 (462)
+++|+|+.+ ..+..++..|.+.+....++++..|+||+||||+.+.
T Consensus 145 ~li~~H~~p-----~~~~~e~~aL~~v~~~~~~~~~~~~villGDFNa~~~ 190 (276)
T smart00476 145 VIVPLHTTP-----EAAVAEIDALYDVYLDVRQKWGTEDVIFMGDFNAGCS 190 (276)
T ss_pred EEEEecCCh-----HHHHHHHHHHHHHHHHHHHhhccCCEEEEccCCCCCC
Confidence 999999974 2344455555554444344456789999999999875
No 16
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=99.74 E-value=8.8e-17 Score=152.14 Aligned_cols=150 Identities=24% Similarity=0.356 Sum_probs=85.2
Q ss_pred HHHHHHHHHHhhcCCceEeeecccC--hHh-HHHHHhhC-CceEEEecCCCC----CCceeEEEEccCCceeeeeeeeee
Q 012486 137 RRKKLIREEMSSYNASILCLQEVDH--FDD-LDDLLQMD-GFRGVYKARTGD----ANDGCAIFWKEKLFTLLHQENIEF 208 (462)
Q Consensus 137 ~R~~~I~~~I~~~~pDIIcLQEvd~--~~~-l~~~L~~~-gY~~~~~~~~~~----~~~G~aI~~r~srf~l~~~~~i~~ 208 (462)
.+.+.|.+.|..++|||||||||.. +.. +...+... ++.......... ...|++|++|...+.........+
T Consensus 16 ~~~~~i~~~i~~~~~Dii~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~r~~~~~~~~~~~~~~ 95 (249)
T PF03372_consen 16 RKRREIAQWIAELDPDIIALQEVRNDDLSELLEEQLRGYLGYYGSFWPGNSPPSDAGGYGVAILSRSPIFSSVSYVFSLF 95 (249)
T ss_dssp HHHHHHHHHHHHHT-SEEEEEEEESHHHHHHHHHHHHTCTTHEEEEEETSSSTTCSSSEEEEEEESSCCCEEEEEEEEEE
T ss_pred hHHHHHHHHHHhcCCCEEEEecchhhhhhhhhhhhcccccccccceeccccccccccCceEEEEEccccccccccccccc
Confidence 3455699999999999999999974 333 34555544 434444332221 368999998775444333332222
Q ss_pred cccCCCCceeEEEEEEechhhhhhhhhcccccccCCCEEEEEeeCCCCCCCCchhHHHHHHHHHHHHHHHhhhcCCCCEE
Q 012486 209 QNFGLRHNVAQLCVLKMNQSLLESAEESSLSMVSQSQSLVVGNIHVLFNPNRGDIKLGQIRLFLEKAYKLSQEWGGIPVL 288 (462)
Q Consensus 209 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~g~~l~V~ntHL~~~p~~~~~R~~Q~~~Ll~~l~~~~~~~~~~pvI 288 (462)
...... .. ........ ...++ ..++.|+|+|+|+.+ ....+..|...+++.+..+.......|+|
T Consensus 96 ~~~~~~--~~-~~~~~~~~-------~~~~~--~~~~~i~v~~~H~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 160 (249)
T PF03372_consen 96 SKPGIR--IF-RRSSKSKG-------IVPVS--INGKPITVVNVHLPS---SNDERQEQWRELLARIQKIYADNPNEPVI 160 (249)
T ss_dssp SSSTTC--EE-EEEEEEEE-------EEEEE--EETEEEEEEEEETTS---HHHHHHHHHHHHHHHHHHHHHTSSCCEEE
T ss_pred cccccc--cc-cccccccc-------ccccc--ccceEEEeeeccccc---cchhhhhhhhhhhhhhhhcccccccceEE
Confidence 221111 10 00000000 00000 117789999999975 44456666667788777766543334799
Q ss_pred EcccCCCCCCchh
Q 012486 289 LAGDLNSSPNSAL 301 (462)
Q Consensus 289 l~GDFNs~P~s~~ 301 (462)
||||||+.|.+..
T Consensus 161 v~GDfN~~~~~~~ 173 (249)
T PF03372_consen 161 VMGDFNSRPDSRD 173 (249)
T ss_dssp EEEE-SS-BSSGG
T ss_pred EEeecccCCccch
Confidence 9999999998754
No 17
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=99.72 E-value=1.5e-16 Score=148.99 Aligned_cols=157 Identities=17% Similarity=0.252 Sum_probs=108.2
Q ss_pred CeeEEEEcccCcccccCcCCCCCCCCCccCCChHHHHHHHHHHHhhcCCceEeeeccc-ChHhHHHHHhhCCceEEEecC
Q 012486 103 DKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVD-HFDDLDDLLQMDGFRGVYKAR 181 (462)
Q Consensus 103 ~~~rV~SyNIl~~~~~~~~~~~y~~~~~~~l~w~~R~~~I~~~I~~~~pDIIcLQEvd-~~~~l~~~L~~~gY~~~~~~~ 181 (462)
..+++++|||....+ .+-..|...|...|+.++|||||||||- .+.++...+. ..|..++...
T Consensus 98 ~~~S~~~WnidgLdl---------------n~l~~RMrAv~H~i~l~sPdiiflQEV~p~~y~~~~K~~-s~y~i~~~~~ 161 (349)
T KOG2756|consen 98 SMFSLITWNIDGLDL---------------NNLSERMRAVCHYLALYSPDVIFLQEVIPPYYSYLKKRS-SNYEIITGHE 161 (349)
T ss_pred cEEEEEEeecccccc---------------chHHHHHHHHHHHHHhcCCCEEEEeecCchhhHHHHHhh-hheeEEEecc
Confidence 468999999986532 1334799999999999999999999994 3333322343 2344444332
Q ss_pred CCCCCceeEEEEccCCceeeeeeeeeecccCCCCceeEEEEEEechhhhhhhhhcccccccCCCEEEEEeeCCCCCCCCc
Q 012486 182 TGDANDGCAIFWKEKLFTLLHQENIEFQNFGLRHNVAQLCVLKMNQSLLESAEESSLSMVSQSQSLVVGNIHVLFNPNRG 261 (462)
Q Consensus 182 ~~~~~~G~aI~~r~srf~l~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~g~~l~V~ntHL~~~p~~~ 261 (462)
. ...|.+++ ..++|.+.....+.|.+.++-.+ -+| ++.. .+|..++++|+||.......
T Consensus 162 ~--~~~~~~~l-~~s~~~Vks~~~i~F~NS~M~R~-L~I--~Ev~---------------v~G~Kl~l~tsHLEStr~h~ 220 (349)
T KOG2756|consen 162 E--GYFTAIML-KKSRVKVKSQEIIPFPNSKMMRN-LLI--VEVN---------------VSGNKLCLMTSHLESTRGHA 220 (349)
T ss_pred c--eeeeeeee-ehhhcCccccceeccCcchhhhe-eEE--EEEe---------------ecCceEEEEeccccCCCCCC
Confidence 2 34454554 45899999888899987654332 223 3332 35778999999999744445
Q ss_pred hhHHHHHHHHHHHHHHHhhhcCCCCEEEcccCCCC
Q 012486 262 DIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSS 296 (462)
Q Consensus 262 ~~R~~Q~~~Ll~~l~~~~~~~~~~pvIl~GDFNs~ 296 (462)
..|..|....++.+++..+..++..||++||.|..
T Consensus 221 P~r~~qF~~~~~k~~EaIe~lPnA~ViFGGD~Nlr 255 (349)
T KOG2756|consen 221 PERMNQFKMVLKKMQEAIESLPNATVIFGGDTNLR 255 (349)
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCceEEEcCcccch
Confidence 67888888777777665554577889999999954
No 18
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=99.64 E-value=6.5e-15 Score=141.67 Aligned_cols=157 Identities=20% Similarity=0.196 Sum_probs=96.7
Q ss_pred CeeEEEEcccCcccccCcCCCCCCCCCccCCChHHHHHHHHHHHhhc-CCceEeeecccChHhH--------HH---HHh
Q 012486 103 DKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSY-NASILCLQEVDHFDDL--------DD---LLQ 170 (462)
Q Consensus 103 ~~~rV~SyNIl~~~~~~~~~~~y~~~~~~~l~w~~R~~~I~~~I~~~-~pDIIcLQEvd~~~~l--------~~---~L~ 170 (462)
..++|+|||+.+.... ...+|.. .+...|... ++|||++||+...... .+ .+.
T Consensus 23 ~~~~~~twn~qg~s~~------------~~~kw~~---~v~~l~~~~~~~DIla~QEags~p~~a~~~~~~~~~~g~~~~ 87 (271)
T PRK15251 23 EDYKVATWNLQGSSAS------------TESKWNV---NVRQLLSGENPADILMVQEAGSLPSSAVPTGRHVQPGGVGIP 87 (271)
T ss_pred ccceEEEeecCCCCCC------------Chhhhhh---hHHHHhcCCCCCCEEEEEecCCCccccccccccccccccccC
Confidence 5699999999976432 2334542 244455554 6999999999753211 11 011
Q ss_pred ------------hCCceEEEecC--CCCCCceeEEEEccCCceeeeeeeeeecccCCCCceeEEEEEEechhhhhhhhhc
Q 012486 171 ------------MDGFRGVYKAR--TGDANDGCAIFWKEKLFTLLHQENIEFQNFGLRHNVAQLCVLKMNQSLLESAEES 236 (462)
Q Consensus 171 ------------~~gY~~~~~~~--~~~~~~G~aI~~r~srf~l~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 236 (462)
.-++.++|.++ .+.+..|+||+ ||++..+...+..+... ... ++.+++
T Consensus 88 v~ey~w~l~~~srpgm~YiY~~aiD~~ggr~glAIl---Sr~~a~~~~~l~~p~~~---~Rp-ilgi~i----------- 149 (271)
T PRK15251 88 IDEYTWNLGTRSRPNQVYIYYSRVDVGANRVNLAIV---SRRRADEVIVLRPPTVA---SRP-IIGIRI----------- 149 (271)
T ss_pred cccEEEEccCccCCCceEEEEecccCCCCceeEEEE---ecccccceEEecCCCCc---ccc-eEEEEe-----------
Confidence 12244444433 23567899999 88887766555544211 112 222232
Q ss_pred ccccccCCCEEEEEeeCCCCCCCCchhHHHHHHHHHHHHHHHhhhcCCCCEEEcccCCCCCCchhHHHH
Q 012486 237 SLSMVSQSQSLVVGNIHVLFNPNRGDIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSPNSALYQFL 305 (462)
Q Consensus 237 ~l~~~~~g~~l~V~ntHL~~~p~~~~~R~~Q~~~Ll~~l~~~~~~~~~~pvIl~GDFNs~P~s~~y~~L 305 (462)
.+ +.+++||+.+.. +..+.+|++.+.+.... ..+..|+++|||||..|++..+.++
T Consensus 150 ------~~--~~ffstH~~a~~--~~da~aiV~~I~~~f~~---~~~~~pw~I~GDFNr~P~sl~~~l~ 205 (271)
T PRK15251 150 ------GN--DVFFSIHALANG--GTDAGAIVRAVHNFFRP---NMRHINWMIAGDFNRSPDRLESTLD 205 (271)
T ss_pred ------cC--eEEEEeeecCCC--CccHHHHHHHHHHHHhh---ccCCCCEEEeccCCCCCcchhhhhc
Confidence 12 799999999752 44488888887777641 1235799999999999999755553
No 19
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.55 E-value=5.2e-14 Score=136.68 Aligned_cols=159 Identities=17% Similarity=0.100 Sum_probs=96.7
Q ss_pred CCeeEEEEcccCcccccCcCCCCCCCCCccCCChHHHHHHHHHHHhhcCCceEeeecccChH-hHHHHHhhCCceEEEec
Q 012486 102 KDKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDHFD-DLDDLLQMDGFRGVYKA 180 (462)
Q Consensus 102 ~~~~rV~SyNIl~~~~~~~~~~~y~~~~~~~l~w~~R~~~I~~~I~~~~pDIIcLQEvd~~~-~l~~~L~~~gY~~~~~~ 180 (462)
...++++++|++++.-. ...++..|...++|+|-+||+..+. .....+ ...|.++...
T Consensus 86 ~~~~~~l~~N~r~~n~~--------------------~~k~Lsl~~~~~~D~v~~~E~~~~~~~~~~~l-~~~yP~~~~~ 144 (309)
T COG3021 86 QRLLWNLQKNVRFDNAS--------------------VAKLLSLIQQLDADAVTTPEGVQLWTAKVGAL-AAQYPAFILC 144 (309)
T ss_pred chhhhhhhhhccccCcC--------------------HHHHHHHHhhhCcchhhhHHHHHHhHhHHHHH-HHhCCceeec
Confidence 45699999998876421 3456777777789999999997643 222233 3445544332
Q ss_pred CCCCCCceeEEEEccCCceeeeeeeeeecccCCCCceeEEEEEEechhhhhhhhhcccccccCCCEEEEEeeCCCCCCCC
Q 012486 181 RTGDANDGCAIFWKEKLFTLLHQENIEFQNFGLRHNVAQLCVLKMNQSLLESAEESSLSMVSQSQSLVVGNIHVLFNPNR 260 (462)
Q Consensus 181 ~~~~~~~G~aI~~r~srf~l~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~g~~l~V~ntHL~~~p~~ 260 (462)
..+++..+.+++.++......+.+ ...+.....++. +.. ...|+.+.|++.|..-.|-.
T Consensus 145 ~~~~~~~~~a~~sr~~~~~~~~~e------~~~~~pk~~~~t-~~~--------------~~~g~~l~v~~lh~~~~~~~ 203 (309)
T COG3021 145 QHPTGVFTLAILSRRPCCPLTEAE------PWLRLPKSALAT-AYP--------------LPDGTELTVVALHAVNFPVG 203 (309)
T ss_pred CCCCCeeeeeeccccccccccccC------ccccCCccceeE-EEE--------------cCCCCEEEEEeeccccccCC
Confidence 223356777777443221111111 111111222222 111 14589999999999833433
Q ss_pred chhHHHHHHHHHHHHHHHhhhcCCCCEEEcccCCCCCCchhHHHHhc
Q 012486 261 GDIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSPNSALYQFLAS 307 (462)
Q Consensus 261 ~~~R~~Q~~~Ll~~l~~~~~~~~~~pvIl~GDFNs~P~s~~y~~L~~ 307 (462)
-+....|...|.+.+..+ ..|+|++||||+.|.|..++.|..
T Consensus 204 ~~~~~~ql~~l~~~i~~~-----~gpvIlaGDfNa~pWS~~~~R~~~ 245 (309)
T COG3021 204 TDPQRAQLLELGDQIAGH-----SGPVILAGDFNAPPWSRTAKRMAA 245 (309)
T ss_pred ccHHHHHHHHHHHHHHcC-----CCCeEEeecCCCcchhHHHHHHHH
Confidence 333337777776666554 479999999999999999888875
No 20
>COG2374 Predicted extracellular nuclease [General function prediction only]
Probab=99.49 E-value=5.6e-13 Score=140.83 Aligned_cols=215 Identities=15% Similarity=0.156 Sum_probs=136.7
Q ss_pred CCCCCCCCceEEcCCCC-CCCCCeeEEEEcccCccccc----CcCCCCCCCCCcc--CCChHHHHHHHHHHHhhcCCceE
Q 012486 82 KSVTDDHRQWTFSSRDL-SKFKDKFVVVSYNILGVENA----LKHPDLYDKVPPK--FLKWERRKKLIREEMSSYNASIL 154 (462)
Q Consensus 82 ~~~~~~~R~w~~~~~~~-~~~~~~~rV~SyNIl~~~~~----~~~~~~y~~~~~~--~l~w~~R~~~I~~~I~~~~pDII 154 (462)
.+.+...+.|...+... +.....|||.+|||++.... ......|..|... ....+..+..|...|..+++|||
T Consensus 440 ~~~s~~~~~~~~pr~at~~~v~G~LkiasfNVlNyf~~~~~~g~~~~~~~d~rga~~~~e~~~Q~~k~v~ai~~ldaDV~ 519 (798)
T COG2374 440 GPVSYLYFTYANPRPATPPDVGGSLKIASFNVLNYFNKLSGDGGGASTFSDCRGANTTEEFARQRAKIVTAILTLDADVL 519 (798)
T ss_pred CCCCccccccCCCccCCccccCceeeeeeeehhhhhccCCCCCCCccccccccCccchhHHHHHHHHHHHHHhhcchhhh
Confidence 33345777777665443 45568899999999975421 0111334433322 22344557789999999999999
Q ss_pred eeecccC--h--------HhHHHHHh----hC-CceEEEecCC---CCCCceeEEEEccCCceeeeeeeeeecccCC---
Q 012486 155 CLQEVDH--F--------DDLDDLLQ----MD-GFRGVYKART---GDANDGCAIFWKEKLFTLLHQENIEFQNFGL--- 213 (462)
Q Consensus 155 cLQEvd~--~--------~~l~~~L~----~~-gY~~~~~~~~---~~~~~G~aI~~r~srf~l~~~~~i~~~~~~~--- 213 (462)
+|-|++. + .++...|. .- .|.+++..+. +....+++++|+.++..++....+.-.....
T Consensus 520 GL~Eien~~~~~~s~~ai~~lV~~lna~~G~~~~y~~v~p~~~~~lgtD~I~vg~iY~~~~V~~~g~~~~~~~~a~~~v~ 599 (798)
T COG2374 520 GLMEIENNGYGTDSGDAIAQLVNALNAKAGAGTRYAFVAPGRNGGLGTDAIRVGFIYKPSAVSLVGKAAIVDNDAFLGVG 599 (798)
T ss_pred eeeeeeccCCCCCcHHHHHHHHHHHHhhcCCCceEEEEecCccCCcCCCceeEEEEeccceEEecccccccccccccccc
Confidence 9999953 1 23322232 22 3555554432 2345688999999988887765542211100
Q ss_pred --CCceeEEEEEEechhhhhhhhhcccccccCCCEEEEEeeCCCCC----CC----------CchhHHHHHHHHHHHHHH
Q 012486 214 --RHNVAQLCVLKMNQSLLESAEESSLSMVSQSQSLVVGNIHVLFN----PN----------RGDIKLGQIRLFLEKAYK 277 (462)
Q Consensus 214 --~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~g~~l~V~ntHL~~~----p~----------~~~~R~~Q~~~Ll~~l~~ 277 (462)
.++.++-.+ ...|+...++..|+|+..||++. |- ....|.+|+.+|..+++.
T Consensus 600 ~~~~~n~R~~l------------aqtF~~~~~~ekfvvVvNHfkSKgs~~p~~gd~~dgQg~~~~~R~~~AqaL~~~la~ 667 (798)
T COG2374 600 EIDDNNARPPL------------AQTFQDLSGGEKFVVVVNHFKSKGSDCPVDGDTQDGQGNSNQTRVRAAQALAAFLAT 667 (798)
T ss_pred cccccccCcch------------hhhhhhccCCcEEEEEEeeecccCCCCCCcccccccccchhhHHHHHHHHHHHHHhh
Confidence 011111100 11244556777899999999864 21 123688999999999987
Q ss_pred HhhhcCCCCEEEcccCCCCCCchhHHHHhcC
Q 012486 278 LSQEWGGIPVLLAGDLNSSPNSALYQFLASS 308 (462)
Q Consensus 278 ~~~~~~~~pvIl~GDFNs~P~s~~y~~L~~~ 308 (462)
......+.|++|+||||+-..+.+++.|.+.
T Consensus 668 ~~~~~~d~~~viLGD~N~y~~edpI~~l~~a 698 (798)
T COG2374 668 NPTGKADADIVILGDFNDYAFEDPIQALEGA 698 (798)
T ss_pred CcccccCCCEEEEeccchhhhccHHHHHhhc
Confidence 5544567899999999999999999999884
No 21
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=98.96 E-value=4.4e-08 Score=98.06 Aligned_cols=67 Identities=16% Similarity=0.154 Sum_probs=44.0
Q ss_pred CCCEEEEEeeCCCCCCCCchhHHHHHHHHHHHHHHHhh----hcCCCCEEEcccCCCCCCc----hhHHHHhcCC
Q 012486 243 QSQSLVVGNIHVLFNPNRGDIKLGQIRLFLEKAYKLSQ----EWGGIPVLLAGDLNSSPNS----ALYQFLASSE 309 (462)
Q Consensus 243 ~g~~l~V~ntHL~~~p~~~~~R~~Q~~~Ll~~l~~~~~----~~~~~pvIl~GDFNs~P~s----~~y~~L~~~~ 309 (462)
.+..++++|+||..+...-+.|..|...+++.+.--.. ......+|++||||-.-+. .+-+++..+.
T Consensus 136 ~~~~~~fv~~HL~a~~~~~~~R~~~~~~I~~~~~f~~~~~~~~~~~d~~f~~GDlNyRi~~~~~~~v~~~i~~~~ 210 (310)
T smart00128 136 SDTSFCFVNSHLAAGASNVEQRNQDYKTILRALSFPERAELSQFDHDVVFWFGDLNFRLDSPSYEEVRRKISKKE 210 (310)
T ss_pred cCcEEEEEeeccccccchhhhhHHHHHHHHHhcCCCCCccccccccceEEEecCcceeecCCCHHHHHHHHhhCc
Confidence 46799999999997655456687888777665521000 0135689999999976543 3445555443
No 22
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=1e-05 Score=88.11 Aligned_cols=107 Identities=10% Similarity=0.118 Sum_probs=64.1
Q ss_pred eeEEEEccCCceeeeeeeeeecccCC---CCceeEEEEEEechhhhhhhhhcccccccCCCEEEEEeeCCCCCCCCchhH
Q 012486 188 GCAIFWKEKLFTLLHQENIEFQNFGL---RHNVAQLCVLKMNQSLLESAEESSLSMVSQSQSLVVGNIHVLFNPNRGDIK 264 (462)
Q Consensus 188 G~aI~~r~srf~l~~~~~i~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~g~~l~V~ntHL~~~p~~~~~R 264 (462)
-+.||.|.+..+.+......-..+++ ..|-+.++ +++. -....||+++.||.+.-..-+.|
T Consensus 629 ~L~iF~r~~~~p~Ik~V~~~tkKTGfGG~tgNKGAVA-Irf~---------------~~~TsfCFv~SHlAAG~snv~ER 692 (1080)
T KOG0566|consen 629 CLLLFIRPDHAPYIKDVAGDTKKTGFGGATGNKGAVA-IRFV---------------YHATSFCFVCSHLAAGQSNVEER 692 (1080)
T ss_pred eEEEEEcccccchhhhcccceeecccccccCCCceEE-EEEE---------------eccccEEEEecccccccchHhhh
Confidence 34667788888777665554444433 23333222 2221 13568999999998644333445
Q ss_pred HHHHHHHHHHHHHHh--hhcCCCCEEEcccCCC---CCCchhHHHHhcCCc
Q 012486 265 LGQIRLFLEKAYKLS--QEWGGIPVLLAGDLNS---SPNSALYQFLASSEL 310 (462)
Q Consensus 265 ~~Q~~~Ll~~l~~~~--~~~~~~pvIl~GDFNs---~P~s~~y~~L~~~~l 310 (462)
...-+.+.+.|.=-. .-+....|+.|||||- .+++.+.+.+.++.+
T Consensus 693 n~DY~tI~r~l~Fp~Gr~I~~HD~ifW~GDFNYRI~l~nEEVr~~v~~~d~ 743 (1080)
T KOG0566|consen 693 NEDYKTIARKLRFPRGRMIFSHDYIFWLGDFNYRIDLSNEEVRRLVRNQDL 743 (1080)
T ss_pred hhhHHHHHHhccccCCccccCCceEEEecccceeecCCHHHHHHHHHhccH
Confidence 555555555442100 0023467999999994 467788888888865
No 23
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B.
Probab=97.86 E-value=2.7e-05 Score=65.97 Aligned_cols=42 Identities=24% Similarity=0.311 Sum_probs=22.1
Q ss_pred cccccCCCCcceeEEEEeCCceeeeeccCCChhhhccCCCCCCCCCCCcchhhc
Q 012486 397 ATSYHSKFMGTVDYIWHTEELVPVRVLETLPVNILRRNGGLPSERWGSDHLALV 450 (462)
Q Consensus 397 fT~~~~~f~~~LDYIf~s~~l~~v~~l~~~~~~~~~~~~~lPn~~~pSDHlpl~ 450 (462)
+|.+...-..+|||||++..+...... -.......|||.||.
T Consensus 78 ~T~~~~~~~s~iD~~~~s~~~~~~~~~------------~~~~~~~~SDH~~I~ 119 (119)
T PF14529_consen 78 PTFISNSHGSRIDLILTSDNLLSWCVW------------VISSDDSGSDHCPIT 119 (119)
T ss_dssp -SEEECCCEE--EEEEEECCGCCCEEE------------EEETTSSSSSB--EE
T ss_pred CcccCCCCCceEEEEEECChHHhcCcE------------EEeCCCCCCCccCCC
Confidence 555555447899999999876643100 011224569999984
No 24
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=97.22 E-value=0.0046 Score=65.97 Aligned_cols=55 Identities=16% Similarity=0.149 Sum_probs=34.2
Q ss_pred CCCEEEEEeeCCCCCCCCch--hHHHHHHHHHHHHHHHhh-----h----cCCCCEEEcccCCCCCC
Q 012486 243 QSQSLVVGNIHVLFNPNRGD--IKLGQIRLFLEKAYKLSQ-----E----WGGIPVLLAGDLNSSPN 298 (462)
Q Consensus 243 ~g~~l~V~ntHL~~~p~~~~--~R~~Q~~~Ll~~l~~~~~-----~----~~~~pvIl~GDFNs~P~ 298 (462)
.+..|+++|+||.++..... .|..+...|++.+. +.. . .....+|++||||-.-+
T Consensus 418 ~~Ts~cFVn~HLAAg~~~~~~~rRN~D~~~I~~~l~-F~~~~~~~~~~~I~dhD~vFWlGDLNYRId 483 (621)
T PLN03191 418 FQSRLCFVCSHLTSGHKDGAEQRRNADVYEIIRRTR-FSSVLDTDQPQTIPSHDQIFWFGDLNYRLN 483 (621)
T ss_pred cCcEEEEEEeccccccccchHHHHHHHHHHHHhccc-cCcccccCCCccccccceEEEecCcccccc
Confidence 36799999999987543333 35556666665431 100 0 01346999999996543
No 25
>KOG1294 consensus Apurinic/apyrimidinic endonuclease and related enzymes [Replication, recombination and repair]
Probab=97.17 E-value=0.0022 Score=64.40 Aligned_cols=65 Identities=18% Similarity=0.072 Sum_probs=41.8
Q ss_pred CcccccCCCCCCCCCCCCCCCCccccccCCC-------CcceeEEEEeCCceeeeeccCCChhhhccCCCCCCCCCCCcc
Q 012486 374 NLCSAYFGIPGSHRTRDNLGEPLATSYHSKF-------MGTVDYIWHTEELVPVRVLETLPVNILRRNGGLPSERWGSDH 446 (462)
Q Consensus 374 ~l~saY~~~~~~~~~~~~~~ep~fT~~~~~f-------~~~LDYIf~s~~l~~v~~l~~~~~~~~~~~~~lPn~~~pSDH 446 (462)
++.++|+.+... ++-.||.|...+ .+.+|||.+++....... +-.-.+.+..+|||
T Consensus 264 ~~iDt~r~~~~~-------~~~~~t~Wk~~~~~r~~~~~~r~dy~~Vsk~~~n~~r----------~~~Ic~r~~~gsdh 326 (335)
T KOG1294|consen 264 PLIDTYRELHKD-------QKKAYTFWKYMPNGRQRGHGERCDYILVSKPGPNNGR----------RFYICSRPIHGSDH 326 (335)
T ss_pred cceeehhhhcCC-------ccccccchhhccccccCCCCCceeEEEecCcCCCCCc----------eeeeecCccCCCCC
Confidence 478999887542 222688876644 468999999975432110 01112333679999
Q ss_pred hhhccEEEE
Q 012486 447 LALVCELAF 455 (462)
Q Consensus 447 lpl~a~f~~ 455 (462)
.|+.+.|.+
T Consensus 327 ~pi~~~~~~ 335 (335)
T KOG1294|consen 327 CPITLEFFL 335 (335)
T ss_pred CCeeeeecC
Confidence 999998853
No 26
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]
Probab=96.44 E-value=0.003 Score=62.92 Aligned_cols=71 Identities=17% Similarity=0.225 Sum_probs=58.9
Q ss_pred EEEEEeeCCCCCCCCchhHHHHHHHHHHHHHHHhhhcCCCCEEEcccCCCCCCchhHHHHhcCCccccccccc
Q 012486 246 SLVVGNIHVLFNPNRGDIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSPNSALYQFLASSELDVCQHDRR 318 (462)
Q Consensus 246 ~l~V~ntHL~~~p~~~~~R~~Q~~~Ll~~l~~~~~~~~~~pvIl~GDFNs~P~s~~y~~L~~~~l~~~~~d~~ 318 (462)
.+++++||+.|+|.....|++|...+++.+.+...- ..++++|||||..|.+..|-.++...+++...|..
T Consensus 139 ~li~~~~~~f~~p~~~~er~r~t~~~lnri~e~~~~--~w~~l~~~l~n~e~gd~~~va~Th~~w~~~~~dvk 209 (378)
T COG5239 139 GLILAVTHLFWHPYGYYERFRQTYILLNRIGEKDNI--AWVCLFVGLFNKEPGDTPYVANTHLPWDPKYRDVK 209 (378)
T ss_pred hhhhhhhHhhcccceeehhhhHHHHHHHHHhhhhhc--chhheeeeeccCCCCCceeEEeccccccCCCCchh
Confidence 688999999999988889999999999888765432 26789999999999999999988888876655544
No 27
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=96.10 E-value=0.045 Score=56.08 Aligned_cols=53 Identities=17% Similarity=0.130 Sum_probs=34.1
Q ss_pred CCEEEEEeeCCCCCCCCchhHHHHHHHHHHHHHHHh--hhcCCCCEEEcccCCCC
Q 012486 244 SQSLVVGNIHVLFNPNRGDIKLGQIRLFLEKAYKLS--QEWGGIPVLLAGDLNSS 296 (462)
Q Consensus 244 g~~l~V~ntHL~~~p~~~~~R~~Q~~~Ll~~l~~~~--~~~~~~pvIl~GDFNs~ 296 (462)
...+|++|.||..+-..-+.|....+.+...|.--. .-+....++++||||-.
T Consensus 164 ~t~~cFv~shlaag~~N~eeR~~Dy~~I~~~i~f~~g~~I~~hdti~w~GDlNyR 218 (460)
T COG5411 164 RTSFCFVNSHLAAGVNNIEERIFDYRSIASNICFSRGLRIYDHDTIFWLGDLNYR 218 (460)
T ss_pred cCCcEEEecchhcccccHHHHHHHHHHHHHheecCCCceecccceEEEecccCce
Confidence 447999999998754444566666666665553210 00124569999999954
No 28
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=93.48 E-value=0.27 Score=48.11 Aligned_cols=62 Identities=15% Similarity=0.200 Sum_probs=37.4
Q ss_pred CCCEEEEEeeCCCCCCCCch-----------hHHHHHHHHHHHHHHHhhhcCCCCEEEcccCCCCCCc-hhHHHHh
Q 012486 243 QSQSLVVGNIHVLFNPNRGD-----------IKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSPNS-ALYQFLA 306 (462)
Q Consensus 243 ~g~~l~V~ntHL~~~p~~~~-----------~R~~Q~~~Ll~~l~~~~~~~~~~pvIl~GDFNs~P~s-~~y~~L~ 306 (462)
.+..|.++|+||+.+-...+ .|..-+..+++...... .+..|+++.||||-.-+. ..++.|.
T Consensus 78 ~~t~fdfVNiHLFHDaSNl~A~~tSPSiYS~~RqrAL~~iL~r~~~~~--~~~~~lF~fGDfNyRld~~~~~e~L~ 151 (356)
T PTZ00312 78 GTVVVNVLNVHLYNDDDNRVAAASSPSLYTGQRQEALLEAIAECSAFI--SPSDPLFIFGDFNVRLDGHNLLEWLK 151 (356)
T ss_pred CCEEEEEEEeeccCCcchhhHHhcCCchhHHHHHHHHHHHHHHHhhcc--CCCCcEEEeccceeeeccccHHHHhc
Confidence 47789999999996542211 22222333443333322 246899999999987654 3455555
No 29
>KOG1976 consensus Inositol polyphosphate 5-phosphatase, type I [Lipid transport and metabolism]
Probab=91.29 E-value=0.4 Score=46.99 Aligned_cols=67 Identities=16% Similarity=0.292 Sum_probs=46.6
Q ss_pred cCCCEEEEEeeCCCCCCC-----------CchhHHHHHHHHHHHHHHHhhhcCCCCEEEcccCCCCCCc-hhHHHHhcCC
Q 012486 242 SQSQSLVVGNIHVLFNPN-----------RGDIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSPNS-ALYQFLASSE 309 (462)
Q Consensus 242 ~~g~~l~V~ntHL~~~p~-----------~~~~R~~Q~~~Ll~~l~~~~~~~~~~pvIl~GDFNs~P~s-~~y~~L~~~~ 309 (462)
..|+.|.++|.||+.+-. ....|-.|+..+|..+..- ..+...+++.||||..-+| .+...|....
T Consensus 166 I~~k~fdfVN~hLFhD~snla~~~sspt~ys~~R~~al~~vL~el~~~--~~~~~~~fVfGdfNfrLds~s~ln~l~a~q 243 (391)
T KOG1976|consen 166 IHGKEFDFVNLHLFHDVSNLATKNSSPTKYSSKREQALEMVLKELDEE--GLRNDAIFVFGDFNFRLDSTSLLNYLAATQ 243 (391)
T ss_pred EcCceeeeeehhhhcchhhhhhhcCChhhhhhhHHHHHHHHHHHHHhh--ccCceEEEEecccccccchHHHHHHHhcCC
Confidence 458999999999974211 1235666777777776542 2346789999999999887 5566666554
Q ss_pred c
Q 012486 310 L 310 (462)
Q Consensus 310 l 310 (462)
+
T Consensus 244 ~ 244 (391)
T KOG1976|consen 244 L 244 (391)
T ss_pred c
Confidence 3
No 30
>KOG0565 consensus Inositol polyphosphate 5-phosphatase and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=49.61 E-value=17 Score=31.86 Aligned_cols=58 Identities=14% Similarity=-0.008 Sum_probs=31.8
Q ss_pred CCCEEEEEeeCCCCCCCCchh-HHHHHHHHHHHHHHH---hhhcC------CCCEEEcccCCCCCCch
Q 012486 243 QSQSLVVGNIHVLFNPNRGDI-KLGQIRLFLEKAYKL---SQEWG------GIPVLLAGDLNSSPNSA 300 (462)
Q Consensus 243 ~g~~l~V~ntHL~~~p~~~~~-R~~Q~~~Ll~~l~~~---~~~~~------~~pvIl~GDFNs~P~s~ 300 (462)
.+..++.++.|+..+-...+. |..-...+++.+.-. ....+ ..-||..||+|....+.
T Consensus 57 ~~~~~~~v~~hl~~~~~~~~~~r~~d~~~i~~~~~~~~~~~~~~~~~~~~~~D~v~w~GDlN~Rl~~~ 124 (145)
T KOG0565|consen 57 SQTSFCFVISHLTSGVHKVYERRNEDYQEILNGLRFPSVSPASEPVISDGEHDTVIWLGDLNYRLSGP 124 (145)
T ss_pred cCceEEEEEecccccchhhHHHhhccHHHHHhhccccccCcccccccccccccEEEEecceeeeecCc
Confidence 366899999999864333333 322233333332211 00011 13488999999876653
No 31
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=48.79 E-value=14 Score=37.38 Aligned_cols=52 Identities=19% Similarity=0.369 Sum_probs=36.3
Q ss_pred CCEEEEEeeCCCCCCCCchhHHHHHHHHHHHHHHHhhhcC-CCCEEEcccCCCCCCch
Q 012486 244 SQSLVVGNIHVLFNPNRGDIKLGQIRLFLEKAYKLSQEWG-GIPVLLAGDLNSSPNSA 300 (462)
Q Consensus 244 g~~l~V~ntHL~~~p~~~~~R~~Q~~~Ll~~l~~~~~~~~-~~pvIl~GDFNs~P~s~ 300 (462)
.....|+-.|-+.+..++..|. |...++..+.+++ ..-||..||||.+|.+-
T Consensus 41 k~~ktvgfFHPYCNAGGGGErV-----LW~Avr~~q~k~~n~~~viYsGD~n~t~~~I 93 (465)
T KOG1387|consen 41 KNVKTVGFFHPYCNAGGGGERV-----LWKAVRITQRKFPNNVIVIYSGDFNVTPENI 93 (465)
T ss_pred hhceEEEEecccccCCCCccee-----hhHHHHHHHHhCCCceEEEEeCCCCCCHHHH
Confidence 4456777788888877777665 4444555555544 35689999999999864
No 32
>KOG0808 consensus Carbon-nitrogen hydrolase [Amino acid transport and metabolism]
Probab=47.75 E-value=17 Score=35.15 Aligned_cols=26 Identities=35% Similarity=0.408 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhhcCCceEeeecccC
Q 012486 136 ERRKKLIREEMSSYNASILCLQEVDH 161 (462)
Q Consensus 136 ~~R~~~I~~~I~~~~pDIIcLQEvd~ 161 (462)
..|.+.|++.-......||||||.+.
T Consensus 99 h~r~kaiieaaa~agvniiclqeawt 124 (387)
T KOG0808|consen 99 HDRLKAIIEAAAVAGVNIICLQEAWT 124 (387)
T ss_pred HHHHHHHHHHHHhcCccEEEeehhhc
Confidence 35777888888888999999999975
No 33
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=37.97 E-value=70 Score=30.75 Aligned_cols=54 Identities=20% Similarity=0.391 Sum_probs=33.7
Q ss_pred CCCEEEEEeeCCCCCCCC---ch-hHHHHHHHHHHHHHHHhhhcCCCCEEEcccCCCC
Q 012486 243 QSQSLVVGNIHVLFNPNR---GD-IKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSS 296 (462)
Q Consensus 243 ~g~~l~V~ntHL~~~p~~---~~-~R~~Q~~~Ll~~l~~~~~~~~~~pvIl~GDFNs~ 296 (462)
.++.++|+-+||.+-... +- +=..|...+...+.++.+.++..-+|+.||+=-.
T Consensus 19 ~~~~lVvADlHlG~e~~~~r~Gi~lP~~~~~~~~~~l~~ii~~~~p~~lIilGD~KH~ 76 (235)
T COG1407 19 LGRTLVVADLHLGYEESLARRGINLPRYQTDRILKRLDRIIERYGPKRLIILGDLKHE 76 (235)
T ss_pred cCcEEEEEecccchhHHHHhcCcccCchhHHHHHHHHHHHHHhcCCCEEEEcCccccc
Confidence 478999999999862211 00 0012445555556555555556789999998643
No 34
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=37.21 E-value=36 Score=37.08 Aligned_cols=16 Identities=19% Similarity=0.052 Sum_probs=13.8
Q ss_pred CCCCcchhhccEEEEE
Q 012486 441 RWGSDHLALVCELAFA 456 (462)
Q Consensus 441 ~~pSDHlpl~a~f~~~ 456 (462)
..-|||-||.|.|.++
T Consensus 577 i~~SDHRPV~A~F~v~ 592 (621)
T PLN03191 577 IRLSDHRPVSSMFLVE 592 (621)
T ss_pred cccCCchhcceEEEEE
Confidence 4569999999999885
No 35
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=33.81 E-value=66 Score=30.51 Aligned_cols=48 Identities=17% Similarity=0.221 Sum_probs=26.8
Q ss_pred EEEEeeCCCCCC-----CCchhHHHHHHHHHHHHHHHhhhcCCCCEEEcccCCCC
Q 012486 247 LVVGNIHVLFNP-----NRGDIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSS 296 (462)
Q Consensus 247 l~V~ntHL~~~p-----~~~~~R~~Q~~~Ll~~l~~~~~~~~~~pvIl~GDFNs~ 296 (462)
|.+.-.||...+ ..++.....++.+.+.++.+.. ...-||++|||-..
T Consensus 2 ~~~sDlHl~~~~~~~~~~~g~~~~~~~~~i~~~~~~~~~--~~D~viiaGDl~~~ 54 (232)
T cd07393 2 FAIADLHLNLDPTKPMDVFGPEWKNHTEKIKENWDNVVA--PEDIVLIPGDISWA 54 (232)
T ss_pred eEEEeeccCCCCCCCCcccCccHHHHHHHHHHHHHhcCC--CCCEEEEcCCCccC
Confidence 567778988644 2333222234444444444431 24459999999754
No 36
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=32.49 E-value=58 Score=28.91 Aligned_cols=49 Identities=16% Similarity=-0.052 Sum_probs=24.0
Q ss_pred EEEeeCCCCCCCCch-hHHHHHHHHHHHHHHHhhhcCCCCEEEcccCCCC
Q 012486 248 VVGNIHVLFNPNRGD-IKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSS 296 (462)
Q Consensus 248 ~V~ntHL~~~p~~~~-~R~~Q~~~Ll~~l~~~~~~~~~~pvIl~GDFNs~ 296 (462)
+|+-+||........ .|+.+-..+.+.++++.+.....-+|++||+=..
T Consensus 2 ~isD~HL~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~pd~vv~~GDl~~~ 51 (156)
T cd08165 2 FLADTHLLGSILGHWLDKLRREWQMERSFQTSLWLLQPDVVFVLGDLFDE 51 (156)
T ss_pred ccccchhcCCcccHHHHHHhhhHHHHHHHHHHHHhcCCCEEEECCCCCCC
Confidence 577788853221111 1222222333333333333334569999998543
No 37
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=31.54 E-value=1.3e+02 Score=28.68 Aligned_cols=53 Identities=23% Similarity=0.460 Sum_probs=31.7
Q ss_pred CCEEEEEeeCCCCCCC---Cc-hhHHHHHHHHHHHHHHHhhhcCCCCEEEcccCCCC
Q 012486 244 SQSLVVGNIHVLFNPN---RG-DIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSS 296 (462)
Q Consensus 244 g~~l~V~ntHL~~~p~---~~-~~R~~Q~~~Ll~~l~~~~~~~~~~pvIl~GDFNs~ 296 (462)
++.++|+-+||..... .+ .+-..|....++.+.++.++....-+|++||+-..
T Consensus 15 ~~~LvisDlHLG~~~~~~~~Gi~~P~~~~~~~l~rl~~li~~~~~d~vIi~GDl~h~ 71 (225)
T TIGR00024 15 GDKAVIADLHLGFERHLDEQGVMVPGFQFREIIERALSIADKYGIEALIINGDLKHE 71 (225)
T ss_pred cCeEEEEeccCCCHHHHHhcCCcCChhHHHHHHHHHHHHHhhcCCCEEEEcCccccc
Confidence 6689999999975211 00 01122445566666555444444679999998643
No 38
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=26.35 E-value=44 Score=30.02 Aligned_cols=49 Identities=29% Similarity=0.365 Sum_probs=24.3
Q ss_pred EEEeeCCCCCCC----CchhHHHHHHHHHHHHHHHhhhcCCCCEEEcccCCCC
Q 012486 248 VVGNIHVLFNPN----RGDIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSS 296 (462)
Q Consensus 248 ~V~ntHL~~~p~----~~~~R~~Q~~~Ll~~l~~~~~~~~~~pvIl~GDFNs~ 296 (462)
+|+=+||..... ...+...+.+..++.+.++.++....-+|++||+=..
T Consensus 2 ~isDlHlG~~~~~~~~g~~~p~~~~~~~~~~l~~~~~~~~~d~lii~GDl~~~ 54 (172)
T cd07391 2 VVADLHLGKEEELRRRGILLPRGQTEDTLERLDRLIEEYGPERLIILGDLKHS 54 (172)
T ss_pred EeEeeccchHHHHHhcCCcCCcccHHHHHHHHHHHHHhcCCCEEEEeCccccc
Confidence 566678764221 0011122233344444444333334679999998643
No 39
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=20.22 E-value=1.8e+02 Score=26.65 Aligned_cols=51 Identities=24% Similarity=0.029 Sum_probs=24.5
Q ss_pred EEEEEeeCCCCCCCCch--hHH-HHHHHHHHHHHHHhhhcCCCCEEEcccCCCCC
Q 012486 246 SLVVGNIHVLFNPNRGD--IKL-GQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSP 297 (462)
Q Consensus 246 ~l~V~ntHL~~~p~~~~--~R~-~Q~~~Ll~~l~~~~~~~~~~pvIl~GDFNs~P 297 (462)
.+.+.-+||........ .|. .+...+-+.++...+ ....-+|++|||=...
T Consensus 2 i~~~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~i~~~GD~~~~~ 55 (223)
T cd00840 2 FLHTADWHLGKPLKGLSRDRRREDQFEAFEEIVELAIE-EKVDFVLIAGDLFDSN 55 (223)
T ss_pred eEEeccccCCccccCcCcccchHHHHHHHHHHHHHHHh-cCCCEEEECCcccCCC
Confidence 46677788874221111 112 223333333333222 1223499999997653
No 40
>PHA02546 47 endonuclease subunit; Provisional
Probab=20.04 E-value=2.3e+02 Score=28.69 Aligned_cols=50 Identities=14% Similarity=0.102 Sum_probs=25.9
Q ss_pred EEEEEeeCCCCCCCCchhHHHHHHHHHHHHHHHhhhcCCCCEEEcccCCCC
Q 012486 246 SLVVGNIHVLFNPNRGDIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSS 296 (462)
Q Consensus 246 ~l~V~ntHL~~~p~~~~~R~~Q~~~Ll~~l~~~~~~~~~~pvIl~GDFNs~ 296 (462)
.+.++=.||.........+..|...+-+.++...+ ..-.-||++||+=..
T Consensus 3 ilhiSD~HLG~~~~~~~~~~~~~~~l~~ii~~a~~-~~vD~VliaGDlfD~ 52 (340)
T PHA02546 3 ILLIGDQHLGVRKDDPWFQNYQLKFIKQAIEYSKA-HGITTWIQLGDTFDV 52 (340)
T ss_pred EEEEeeecCCCcCCChhhHHHHHHHHHHHHHHHHH-cCCCEEEECCcccCC
Confidence 46777788875332222222233333333332222 234569999998655
Done!