Query 012486
Match_columns 462
No_of_seqs 309 out of 1845
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 10:23:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012486.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012486hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ngq_A CCR4-NOT transcription 100.0 1.4E-60 4.7E-65 488.4 27.6 334 83-458 9-384 (398)
2 4b8c_D Glucose-repressible alc 100.0 1E-45 3.5E-50 407.9 5.8 291 103-460 393-722 (727)
3 3l1w_A Uncharacterized protein 100.0 1.3E-31 4.4E-36 257.5 24.6 169 105-308 1-182 (257)
4 3g6s_A Putative endonuclease/e 100.0 3E-32 1E-36 263.6 18.5 173 103-308 2-188 (267)
5 3mpr_A Putative endonuclease/e 100.0 1.5E-31 5.1E-36 263.9 18.8 180 101-309 3-195 (298)
6 4gz1_A Tyrosyl-DNA phosphodies 100.0 3E-30 1E-34 245.4 18.6 166 102-306 7-172 (256)
7 4fva_A 5'-tyrosyl-DNA phosphod 100.0 6.9E-30 2.4E-34 243.2 21.1 161 101-299 10-172 (256)
8 4f1h_A Tyrosyl-DNA phosphodies 100.0 3.3E-30 1.1E-34 242.1 18.1 163 103-304 2-164 (250)
9 4gew_A 5'-tyrosyl-DNA phosphod 100.0 2.2E-29 7.6E-34 255.7 21.1 162 100-299 115-278 (362)
10 3teb_A Endonuclease/exonucleas 100.0 2.5E-29 8.7E-34 241.7 15.3 166 103-309 2-195 (266)
11 1zwx_A SMCL, sphingomyelinase- 100.0 1E-28 3.5E-33 242.7 14.9 174 101-307 7-210 (301)
12 2ddr_A Sphingomyelin phosphodi 99.9 4.2E-26 1.4E-30 224.4 16.4 174 101-307 6-216 (306)
13 3i41_A Beta-hemolysin; beta to 99.9 5.4E-26 1.9E-30 226.4 14.6 176 101-307 26-229 (317)
14 2jc4_A Exodeoxyribonuclease II 99.9 4.3E-25 1.5E-29 210.9 17.3 147 105-299 1-153 (256)
15 1ako_A Exonuclease III; AP-end 99.9 8E-26 2.7E-30 217.5 11.8 153 105-302 1-161 (268)
16 2jc5_A Exodeoxyribonuclease; h 99.9 5.3E-25 1.8E-29 210.6 13.0 148 105-299 2-156 (259)
17 2o3h_A DNA-(apurinic or apyrim 99.9 2.3E-23 7.9E-28 203.0 17.7 153 100-299 24-184 (285)
18 1vyb_A ORF2 contains A reverse 99.9 8.1E-24 2.8E-28 199.6 14.0 146 102-299 5-152 (238)
19 3g91_A MTH0212, exodeoxyribonu 99.9 6.4E-23 2.2E-27 198.0 19.2 149 104-299 3-158 (265)
20 2voa_A AF_EXO, XTHA, exodeoxyr 99.9 1.8E-23 6.1E-28 200.2 13.9 146 105-299 2-153 (257)
21 1hd7_A DNA-(apurinic or apyrim 99.9 6.6E-23 2.2E-27 204.0 16.3 153 101-299 58-217 (318)
22 2j63_A AP-endonuclease; base e 99.9 1.1E-22 3.8E-27 212.2 16.4 80 101-197 146-231 (467)
23 2a40_B Deoxyribonuclease-1; WA 99.9 2.5E-22 8.6E-27 193.9 16.0 156 105-298 1-174 (260)
24 1wdu_A TRAS1 ORF2P; four-layer 99.9 7.5E-22 2.6E-26 188.5 17.1 144 102-298 17-160 (245)
25 2ei9_A Non-LTR retrotransposon 99.8 1.2E-18 4.1E-23 166.7 16.6 128 103-298 6-133 (240)
26 1sr4_B CDT B, cytolethal diste 99.8 2.8E-18 9.7E-23 164.1 14.7 161 103-305 3-189 (261)
27 2imq_X Salivary nitrophorin; f 99.8 8.8E-19 3E-23 171.6 10.6 169 103-309 7-191 (282)
28 2f1n_A CDT B, cytolethal diste 99.7 5.4E-18 1.8E-22 160.6 9.4 156 102-304 13-197 (262)
29 1i9z_A Synaptojanin, phosphati 99.6 3.2E-14 1.1E-18 142.7 19.1 167 103-309 25-227 (347)
30 2xsw_A 72 kDa inositol polypho 99.4 5.2E-12 1.8E-16 127.0 14.8 161 103-299 26-211 (357)
31 4a9c_A Phosphatidylinositol-3, 98.8 8.5E-07 2.9E-11 87.2 22.2 142 149-309 46-211 (316)
32 3mtc_A Type II inositol-1,4,5- 98.7 6.8E-07 2.3E-11 87.7 19.9 164 104-308 9-210 (313)
33 2q8u_A Exonuclease, putative; 20.4 1.5E+02 0.0051 28.1 6.1 50 246-296 21-76 (336)
No 1
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=100.00 E-value=1.4e-60 Score=488.36 Aligned_cols=334 Identities=27% Similarity=0.441 Sum_probs=254.4
Q ss_pred CCCCCCCceEEcCCCCC-CCCCeeEEEEcccCcccccCcCCCCCCCCCccCCChHHHHHHHHHHHhhcCCceEeeecccC
Q 012486 83 SVTDDHRQWTFSSRDLS-KFKDKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDH 161 (462)
Q Consensus 83 ~~~~~~R~w~~~~~~~~-~~~~~~rV~SyNIl~~~~~~~~~~~y~~~~~~~l~w~~R~~~I~~~I~~~~pDIIcLQEvd~ 161 (462)
++++..|.|+.+..+.. .....||||||||+++.++. +.+|++|+.+.+.|.+|++.|+++|..++|||||||||+.
T Consensus 9 ~~~p~~R~wi~~~~~~~~~~~~~~~V~syNIl~d~~~~--~~~~~~~p~~~~~W~~R~~~i~~~i~~~~pDIi~lQEv~~ 86 (398)
T 3ngq_A 9 PEQLPPRPWITLKERDQILPSASFTVMCYNVLCDKYAT--RQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQEVET 86 (398)
T ss_dssp ---CCCCCEEECSCCC--CCCEEEEEEEEECCCGGGCC--TTTCTTSCHHHHSHHHHHHHHHHHHHHHCCSEEEEEEEEH
T ss_pred CCCCCCCcceECCCCCCCCCCCCEEEEEEccCcCcCCc--cccccCCChhhcCHHHHHHHHHHHHHhcCCCEEEEecccH
Confidence 55788999999976432 23468999999999998875 5889999999999999999999999999999999999973
Q ss_pred --h-HhHHHHHhhCCceEEEecCCC---------CCCceeEEEEccCCceeeeeeeeeecccC---------------CC
Q 012486 162 --F-DDLDDLLQMDGFRGVYKARTG---------DANDGCAIFWKEKLFTLLHQENIEFQNFG---------------LR 214 (462)
Q Consensus 162 --~-~~l~~~L~~~gY~~~~~~~~~---------~~~~G~aI~~r~srf~l~~~~~i~~~~~~---------------~~ 214 (462)
+ +.+.+.|..+||.++|..++. .+++|||||||+++|++++...++|++.. .+
T Consensus 87 ~q~~~~l~~~L~~~gY~~v~~~k~r~~~~~~~~~~~~eG~AIfyr~~~f~ll~~~~i~ls~~~~~~s~~~~~~~~Ri~t~ 166 (398)
T 3ngq_A 87 EQYFTLFLPALKERGYDGFFSPKSRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQVAMANSDGSEAMLNRVMTK 166 (398)
T ss_dssp HHHHHTHHHHHHHTTEEEEEEESCTTSCCCHHHHHTCEEEEEEEETTTEEEEEEEEEEHHHHHHHTCTTCHHHHHTTTTC
T ss_pred HHHHHHHHHHHHhCCceEEEecCCCccccccccccCcceeEEEEECCcceEEeeeEEecCCCcccccccchhhhcceeec
Confidence 4 446788999999999875532 35799999999999999999999997532 14
Q ss_pred CceeEEEEEEechhhhhhhhhcccccccCCCEEEEEeeCCCCCCCCchhHHHHHHHHHHHHHHHhhhc-----------C
Q 012486 215 HNVAQLCVLKMNQSLLESAEESSLSMVSQSQSLVVGNIHVLFNPNRGDIKLGQIRLFLEKAYKLSQEW-----------G 283 (462)
Q Consensus 215 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~~g~~l~V~ntHL~~~p~~~~~R~~Q~~~Ll~~l~~~~~~~-----------~ 283 (462)
+|+++++.|+......... ..-....+++.|+|+||||.|+|...++|+.|+..|++.++++.++. .
T Consensus 167 ~nval~~~L~~~~~~~~~~--~~~~~~~~~~~l~V~nTHL~~~p~~~~vRl~Q~~~Ll~~l~~~~~~~~~~~~~~~~~~~ 244 (398)
T 3ngq_A 167 DNIGVAVVLEVHKELFGAG--MKPIHAADKQLLIVANAHMHWDPEYSDVKLIQTMMFVSEVKNILEKASSRPGSPTADPN 244 (398)
T ss_dssp CCEEEEEEEEECGGGC-------------CCEEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHHCC-------------
T ss_pred cceeEEEEEEEcccccccc--cccccCCCCcEEEEEEeCcCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcccccccccCC
Confidence 7888888888653100000 00001135789999999999999999999999999999998875322 3
Q ss_pred CCCEEEcccCCCCCCchhHHHHhcCCccccccccccccccccccccccccccCCCccccccccCcccccchhhHhhhcCC
Q 012486 284 GIPVLLAGDLNSSPNSALYQFLASSELDVCQHDRRHISGQFAKCRDIDFQKRNSTSDWISISRPLLYQWTDVELRLATGC 363 (462)
Q Consensus 284 ~~pvIl~GDFNs~P~s~~y~~L~~~~l~~~~~d~~~isgq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~g~ 363 (462)
..|+|||||||+.|+|++|++|++|.++....|..... |+.... .|.... ..|
T Consensus 245 ~~PvIl~GDFNs~P~s~vy~~L~~G~v~~~h~d~~~~~------------y~~~~~-----------~~~~~~---~~~- 297 (398)
T 3ngq_A 245 SIPLVLCADLNSLPDSGVVEYLSNGGVADNHKDFKELR------------YNECLM-----------NFSCNG---KNG- 297 (398)
T ss_dssp CCCEEEEEECSCCTTSHHHHHHHHTEEETTCGGGCC-----------------GGG-----------GGCC---------
T ss_pred CCceEEEeeCCCCCCCHHHHHHhcCCCCCCChhhhhcc------------cccccc-----------cccccc---ccc-
Confidence 57999999999999999999999998765433221100 000000 000000 000
Q ss_pred CcccccccCCCcccccCCCCCCCCCCCCCCCCccccccCCCCcceeEEEEeC-CceeeeeccCCChhhhc--cCCCCCCC
Q 012486 364 EGVTELQHQLNLCSAYFGIPGSHRTRDNLGEPLATSYHSKFMGTVDYIWHTE-ELVPVRVLETLPVNILR--RNGGLPSE 440 (462)
Q Consensus 364 ~~~~~~~h~~~l~saY~~~~~~~~~~~~~~ep~fT~~~~~f~~~LDYIf~s~-~l~~v~~l~~~~~~~~~--~~~~lPn~ 440 (462)
.....+.|+++|+|||.. +||+||||+.+|.|||||||||+ .+.++++|+.++.+++. +..||||.
T Consensus 298 ~~~~~~~h~~~L~SAy~~-----------~~~~fTnyt~~F~g~lDYI~~s~~~l~v~~vl~~~~~~~l~~~~~~glP~~ 366 (398)
T 3ngq_A 298 SSEGRITHGFQLKSAYEN-----------NLMPYTNYTFDFKGVIDYIFYSKTHMNVEGVLGPLDPQWLVENNITGCPHP 366 (398)
T ss_dssp --CCEEECSCCEEETTTT-----------TSSSCSEECSSCEECCEEEEEETTTEEEEEEECCCCHHHHHHTTCCSSCBT
T ss_pred ccccccccCccccccccC-----------CCCCceeccCCcCCceeEEEEeCCceEEEeecCCCCHHHhccccccCCCCC
Confidence 011258899999999975 47899999999999999999997 58888999999988775 57999999
Q ss_pred CCCCcchhhccEEEEEeC
Q 012486 441 RWGSDHLALVCELAFANN 458 (462)
Q Consensus 441 ~~pSDHlpl~a~f~~~~~ 458 (462)
.|||||+||+|+|+|++.
T Consensus 367 ~~PSDHi~l~a~f~~~~~ 384 (398)
T 3ngq_A 367 HIPSDHFSLLTQLELHPP 384 (398)
T ss_dssp TBCSSBCCEEEEEEECCC
T ss_pred CCCCcchheeEEEEEccC
Confidence 999999999999999775
No 2
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1e-45 Score=407.86 Aligned_cols=291 Identities=29% Similarity=0.576 Sum_probs=93.3
Q ss_pred CeeEEEEcccCcccccCcCCCCCCCCCccCCChHHHHHHHHHHHhhcCCceEeeecccC--hHh-HHHHHhhCCceEEEe
Q 012486 103 DKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDH--FDD-LDDLLQMDGFRGVYK 179 (462)
Q Consensus 103 ~~~rV~SyNIl~~~~~~~~~~~y~~~~~~~l~w~~R~~~I~~~I~~~~pDIIcLQEvd~--~~~-l~~~L~~~gY~~~~~ 179 (462)
..++++||||+++.++. +..|.+|+.+.+.|.+|+.+|+++|..++|||||||||+. +.+ +.+.|.++||.++|.
T Consensus 393 ~~~~~ls~Nil~~~~~~--~~~~~~~p~~~~~w~~R~~~i~~~I~~~~pDIIcLQEV~~~~~~~~l~~~l~~~gY~~~~~ 470 (727)
T 4b8c_D 393 RTFTVLSYNTLCQHYAT--PKMYRYTPSWALSWDYRRNKLKEQILSYDSDLLCLQEVESKTFEEYWVPLLDKHGYTGIFH 470 (727)
T ss_dssp ---------CCCGGGCC--TTTCCSSCHHHHSHHHHHHHHHHHHHHSCCSSEEEC-CCHHHHHTTTCC-------CEEC-
T ss_pred cceeeeeccccccccCc--cccccccchhhhhhhhhhhHHHHHHHHcCCCeEEEEecCHHHHHHHHHHHHHhCCccEEEe
Confidence 46899999999988764 5789999999999999999999999999999999999984 444 367788899999885
Q ss_pred cCC---------CCCCceeEEEEccCCceeeeeeeeeecccCCC-----------------CceeEEEEEEechhhhhhh
Q 012486 180 ART---------GDANDGCAIFWKEKLFTLLHQENIEFQNFGLR-----------------HNVAQLCVLKMNQSLLESA 233 (462)
Q Consensus 180 ~~~---------~~~~~G~aI~~r~srf~l~~~~~i~~~~~~~~-----------------~~~~~~~~l~~~~~~~~~~ 233 (462)
.++ +...+|||||||++||++++...++|...... ++++.++.
T Consensus 471 ~~~~~~~~~~~~~~~~~G~AI~y~~srf~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~~~----------- 539 (727)
T 4b8c_D 471 AKARAKTMHSKDSKKVDGCCIFFKRDQFKLITKDAMDFSGAWMKHKKFQRTEDYLNRAMNKDNVALFLK----------- 539 (727)
T ss_dssp ---------------CCCCEEEC---------------------------------------------------------
T ss_pred ccCCcccccccCCCCcccEEEEEEcccceEeeeeEEeechhhhhchhhcccHHHHhhcccCCcEEEEEE-----------
Confidence 432 34689999999999999999999888643211 11222222
Q ss_pred hhcccccccCCCEEEEEeeCCCCCCCCchhHHHHHHHHHHHHHHHhhh---------cCCCCEEEcccCCCCCCchhHHH
Q 012486 234 EESSLSMVSQSQSLVVGNIHVLFNPNRGDIKLGQIRLFLEKAYKLSQE---------WGGIPVLLAGDLNSSPNSALYQF 304 (462)
Q Consensus 234 ~~~~l~~~~~g~~l~V~ntHL~~~p~~~~~R~~Q~~~Ll~~l~~~~~~---------~~~~pvIl~GDFNs~P~s~~y~~ 304 (462)
++++.+|+.|+|+||||+|.|..+++|+.|+..|+++++++..+ ..+.|+|||||||+.|++.+|++
T Consensus 540 ----l~~~~~g~~l~V~ntHL~~~p~~~~~R~~Qa~~l~~~l~~~~~~~~~~~~~~~~~~~pvIl~GDFNs~P~s~~~~~ 615 (727)
T 4b8c_D 540 ----LQHIPSGDTIWAVTTHLHWDPKFNDVKTFQVGVLLDHLETLLKEETSHNFRQDIKKFPVLICGDFNSYINSAVYEL 615 (727)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----EeecCCCceEEEEEeccccCCCCCchHHHHHHHHHHHHHHHHHHhcccccccccCCCceEEecccCCCCCCcceEe
Confidence 33345688999999999999888899999999999988876432 23679999999999999999999
Q ss_pred HhcCCccccccccccccccccccccccccccCCCccccccccCcccccchhhHhhhcCCCcccccccCCCcccccCCCCC
Q 012486 305 LASSELDVCQHDRRHISGQFAKCRDIDFQKRNSTSDWISISRPLLYQWTDVELRLATGCEGVTELQHQLNLCSAYFGIPG 384 (462)
Q Consensus 305 L~~~~l~~~~~d~~~isgq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~g~~~~~~~~h~~~l~saY~~~~~ 384 (462)
|+.|.++.. .| +.+ ... |......+.|+++|.++|...
T Consensus 616 l~~~~v~~~-~d---~~~--------------------------------~~~----~~~~~~~~~~~~~l~say~~~-- 653 (727)
T 4b8c_D 616 INTGRVQIH-QE---GNG--------------------------------RDF----GYMSEKNFSHNLALKSSYNCI-- 653 (727)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eecCCcCcc-hh---hcc--------------------------------ccc----cccccccccccccccchhhcC--
Confidence 998875310 00 000 000 000012356788899999753
Q ss_pred CCCCCCCCCCCccccccCCCCcceeEEEEeCCc-eeeeeccCCChhhhccCCCCCCCCCCCcchhhccEEEEEeCCC
Q 012486 385 SHRTRDNLGEPLATSYHSKFMGTVDYIWHTEEL-VPVRVLETLPVNILRRNGGLPSERWGSDHLALVCELAFANNGD 460 (462)
Q Consensus 385 ~~~~~~~~~ep~fT~~~~~f~~~LDYIf~s~~l-~~v~~l~~~~~~~~~~~~~lPn~~~pSDHlpl~a~f~~~~~~~ 460 (462)
+++.||+|+.+|.++|||||||++. .+++++..+..+.+.++.|+|+..|||||+||+|+|+|++.+.
T Consensus 654 --------~~~~~T~~~~~~~~~LDyI~~S~~~l~~~~~~~~~~~~~~~~~~~~P~~~~pSDH~pV~a~f~l~~~~~ 722 (727)
T 4b8c_D 654 --------GELPFTNFTPSFTDVIDYIWFSTHALRVRGLLGEVDPEYVSKFIGFPNDKFPSDHIPLLARFEFMKTNT 722 (727)
T ss_dssp ----------CCCSBCCSSCCBCC-----------------CCCHHHHTTCSSSSBTTBCSSBCC------------
T ss_pred --------CCCccccccCccCCeeeeEEEcCCceeEeeccCCCCHHHhcccCCCCCCCCCCCceeEEEEEEEecCCC
Confidence 5788999999999999999999864 4556677777788888999999999999999999999987654
No 3
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=100.00 E-value=1.3e-31 Score=257.48 Aligned_cols=169 Identities=21% Similarity=0.334 Sum_probs=128.3
Q ss_pred eEEEEcccCcccccCcCCCCCCCCCccCCChHHHHHHHHHHHhhcCCceEeeecccC--hHhHHHHHhhCCceEEEecCC
Q 012486 105 FVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDH--FDDLDDLLQMDGFRGVYKART 182 (462)
Q Consensus 105 ~rV~SyNIl~~~~~~~~~~~y~~~~~~~l~w~~R~~~I~~~I~~~~pDIIcLQEvd~--~~~l~~~L~~~gY~~~~~~~~ 182 (462)
||||||||+.... ..+...|..|+..|+++|..++|||||||||+. ...+.. ..||..+...+.
T Consensus 1 lrv~t~Ni~~~~~-----------~~~~~~w~~r~~~i~~~i~~~~~DIv~LQEv~~~~~~~l~~---~l~y~~~~~~~~ 66 (257)
T 3l1w_A 1 MKIATYNVRVDTE-----------YDQDWQWSFRKEAVCQLINFHDWSLCCIQEVRPNQVRDLKA---YTTFTCLSAERE 66 (257)
T ss_dssp CEEEEEECCCCCG-----------GGGGGSHHHHHHHHHHHHHHHCCSEEEEEEECHHHHHHHHH---HSSSEEEEEESS
T ss_pred CEEEEEEeccCCC-----------CccccChHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHh---cCCCcEEEeccc
Confidence 6999999997532 234578999999999999999999999999974 333433 348876655443
Q ss_pred C-CCCceeEEEEccCCceeeeeeeeeecccCC---------CCceeEEEEEEechhhhhhhhhcccccccCCCEEEEEee
Q 012486 183 G-DANDGCAIFWKEKLFTLLHQENIEFQNFGL---------RHNVAQLCVLKMNQSLLESAEESSLSMVSQSQSLVVGNI 252 (462)
Q Consensus 183 ~-~~~~G~aI~~r~srf~l~~~~~i~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~g~~l~V~nt 252 (462)
. ...+|+|||+|+++|++++...++++.... ....+..+.++. ..+|+.+.|+||
T Consensus 67 ~~~~~~g~ail~r~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~---------------~~~g~~~~v~~~ 131 (257)
T 3l1w_A 67 GDGQGEGLAILYNEQKVQAIDTGYFWLSETPQQPSIHPEAGCPRIALWGLFKE---------------TTQNTPFLVINV 131 (257)
T ss_dssp SSSCSCEEEEEECTTTEEEEEEEEEESSSSTTSSCCCTTCSSCCEEEEEEEEE---------------TTCSSCEEEEEE
T ss_pred CCCCCceEEEEEEcceEEEEecCeEECcCCCCcccccccccccceeEEEEEEE---------------cCCCCEEEEEEe
Confidence 2 567899999999999999999888764321 112233333332 234789999999
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHH-HhhhcCCCCEEEcccCCCCCCchhHHHHhcC
Q 012486 253 HVLFNPNRGDIKLGQIRLFLEKAYK-LSQEWGGIPVLLAGDLNSSPNSALYQFLASS 308 (462)
Q Consensus 253 HL~~~p~~~~~R~~Q~~~Ll~~l~~-~~~~~~~~pvIl~GDFNs~P~s~~y~~L~~~ 308 (462)
||.+. ....|..|+..|++.+++ +.. + |+|||||||+.|++..|+.|..+
T Consensus 132 Hl~~~--~~~~r~~q~~~l~~~i~~~~~~---~-pvil~GDfN~~~~~~~~~~l~~~ 182 (257)
T 3l1w_A 132 HLDHI--SAHARLAGMTVILEELHDKIAQ---Y-PTLLMGDFNAESGEEVHQLVQKK 182 (257)
T ss_dssp ECCSS--CHHHHHHHHHHHHHHTHHHHHH---S-CEEEEEECCCCTTSHHHHHHTTT
T ss_pred CCCCC--CHHHHHHHHHHHHHHHHHHcCC---C-CEEEEeeCCCCCCcHHHHHhhhh
Confidence 99863 456799999999998873 432 3 99999999999999999988764
No 4
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=100.00 E-value=3e-32 Score=263.55 Aligned_cols=173 Identities=18% Similarity=0.276 Sum_probs=131.2
Q ss_pred CeeEEEEcccCcccccCcCCCCCCCCCccCCChHHHHHHHHHHHhhcCCceEeeecccC--hHhHHHHHhhCCceEEEec
Q 012486 103 DKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDH--FDDLDDLLQMDGFRGVYKA 180 (462)
Q Consensus 103 ~~~rV~SyNIl~~~~~~~~~~~y~~~~~~~l~w~~R~~~I~~~I~~~~pDIIcLQEvd~--~~~l~~~L~~~gY~~~~~~ 180 (462)
.+||||||||+.... ..+...|..|...|++.|..++|||||||||+. ...|...| .+|..+...
T Consensus 2 ~~l~v~t~Ni~~~~~-----------~~~~~~~~~r~~~i~~~i~~~~~DIv~LQEv~~~~~~~l~~~l--~~y~~~~~~ 68 (267)
T 3g6s_A 2 TDVRWATFNIRYDNP-----------QDSLNNWQYRKDRVCQFIKDHELDIVGMQEVLHNQFQDLRAGL--PEYDGIGVG 68 (267)
T ss_dssp EEEEEEEEECCCCCG-----------GGGGGSGGGTHHHHHHHHHHTTCSEEEEESBCHHHHHHHHHHC--TTEEEECCC
T ss_pred CcEEEEEEEeccCCC-----------CccccCHHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHhc--cCCcEEEec
Confidence 479999999997532 134678999999999999999999999999974 33444444 467665443
Q ss_pred CCC--CCCceeEEEEccCCceeeeeeeeeecccCCC----------CceeEEEEEEechhhhhhhhhcccccccCCCEEE
Q 012486 181 RTG--DANDGCAIFWKEKLFTLLHQENIEFQNFGLR----------HNVAQLCVLKMNQSLLESAEESSLSMVSQSQSLV 248 (462)
Q Consensus 181 ~~~--~~~~G~aI~~r~srf~l~~~~~i~~~~~~~~----------~~~~~~~~l~~~~~~~~~~~~~~l~~~~~g~~l~ 248 (462)
+.. ..++|+|||||++||++++...+.++..... ...+..+.++. ..+++.|.
T Consensus 69 ~~~~~~~g~~~ail~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~---------------~~~~~~~~ 133 (267)
T 3g6s_A 69 RDDGKTAGEYAPLFYRKDKYEVLDSNTFWLAENPDSVGMMGWDAVCVRIATWAKFKD---------------KATGKIFM 133 (267)
T ss_dssp TTTSSSSSCBCCEEEETTTEEEEEEEEEESSSCTTSTTCCCTTCSSCCEEEEEEEEE---------------TTTCCEEE
T ss_pred CCCCCcCCceeEEEEEccceEEEecccEecCCCCCccccccccccCcceEEEEEEEE---------------cCCCCEEE
Confidence 322 3466799999999999999998887643211 12233344432 23588999
Q ss_pred EEeeCCCCCCCCchhHHHHHHHHHHHHHHHhhhcCCCCEEEcccCCCCCCchhHHHHhcC
Q 012486 249 VGNIHVLFNPNRGDIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSPNSALYQFLASS 308 (462)
Q Consensus 249 V~ntHL~~~p~~~~~R~~Q~~~Ll~~l~~~~~~~~~~pvIl~GDFNs~P~s~~y~~L~~~ 308 (462)
|+||||.+ .....|..|++.|++.+.++.. +.|+|||||||+.|.+.+|+.|.+.
T Consensus 134 v~~~Hl~~--~~~~~R~~q~~~l~~~l~~~~~---~~pvIl~GDfN~~~~~~~~~~l~~~ 188 (267)
T 3g6s_A 134 AVNTHFDH--VGEEARRQSALLIIRKIKEIVG---ERPAVVTGDFNVTDASDAYETITTN 188 (267)
T ss_dssp EEEEECCS--SCHHHHHHHHHHHHHHHHHHTT---TSCEEEEEECSSCTTSHHHHHHHSS
T ss_pred EEEeCCCC--CCHHHHHHHHHHHHHHHHHhcC---CCCEEEEeECCCCCCCHHHHHhhcC
Confidence 99999986 3467789999999999887653 6899999999999999999999875
No 5
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=99.97 E-value=1.5e-31 Score=263.87 Aligned_cols=180 Identities=18% Similarity=0.266 Sum_probs=131.8
Q ss_pred CCCeeEEEEcccCcccccCcCCCCCCCCCccCCChHHHHHHHHHHHhhcCCceEeeecccC--hHhHHHHHhhCCceEEE
Q 012486 101 FKDKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDH--FDDLDDLLQMDGFRGVY 178 (462)
Q Consensus 101 ~~~~~rV~SyNIl~~~~~~~~~~~y~~~~~~~l~w~~R~~~I~~~I~~~~pDIIcLQEvd~--~~~l~~~L~~~gY~~~~ 178 (462)
.+..||||||||+...... ......|..|++.|++.|..++|||||||||+. ...|...|. +|..+.
T Consensus 3 ~~~~lrV~t~Ni~~~~~~~---------~~~~~~w~~r~~~i~~~i~~~~~DIv~LQEv~~~~~~~l~~~l~--~y~~~~ 71 (298)
T 3mpr_A 3 QPTSLTVASYNLRNANGSD---------SARGDGWGQRYPVIAQMVQYHDFDIFGTQECFLHQLKDMKEALP--GYDYIG 71 (298)
T ss_dssp CCEEEEEEEEECCCCCHHH---------HHHTCCHHHHHHHHHHHHHHTTCSEEEEESBCHHHHHHHHHHST--TEEEEC
T ss_pred CCCcEEEEEEEeccCCCCC---------cccccCHHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHhCC--CCcEEE
Confidence 3468999999998643110 012568999999999999999999999999974 344555553 465544
Q ss_pred ecCC--CCCCceeEEEEccCCceeeeeeeeeecccCCC---------CceeEEEEEEechhhhhhhhhcccccccCCCEE
Q 012486 179 KART--GDANDGCAIFWKEKLFTLLHQENIEFQNFGLR---------HNVAQLCVLKMNQSLLESAEESSLSMVSQSQSL 247 (462)
Q Consensus 179 ~~~~--~~~~~G~aI~~r~srf~l~~~~~i~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~~~l~~~~~g~~l 247 (462)
..+. ...++++|||||++||++++...++++..... ...+..+.++. ..+|+.|
T Consensus 72 ~~~~~g~~~g~~~aily~~sr~~i~~~~~~~l~~~p~~~~~~~~~~~~R~~~~~~~~~---------------~~~g~~~ 136 (298)
T 3mpr_A 72 VGRDDGKDKGEHSAIFYRTDKFDIVEKGDFWLSETPDVPSKGWDAVLPRICSWGHFKC---------------KDTGFEF 136 (298)
T ss_dssp CCTTTSSSSSCBCCEEEETTTEEEEEEEEEESSSSTTSSCCCTTCSSCCEEEEEEEEE---------------TTTCCEE
T ss_pred EecCCCCCCCceeEEEEecCceEEEeccEEEccCCCCccCcccccccCceeEEEEEEE---------------cCCCCEE
Confidence 3332 23456799999999999999998877643211 11233333332 2458899
Q ss_pred EEEeeCCCCCCCCchhHHHHHHHHHHHHHHHhhhcCCCCEEEcccCCCCCCchhHHHHhcCC
Q 012486 248 VVGNIHVLFNPNRGDIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSPNSALYQFLASSE 309 (462)
Q Consensus 248 ~V~ntHL~~~p~~~~~R~~Q~~~Ll~~l~~~~~~~~~~pvIl~GDFNs~P~s~~y~~L~~~~ 309 (462)
.|+||||.+ .....|..|++.|++.+.++... .+.|+|||||||+.|.+..|+.|.+.+
T Consensus 137 ~v~~~Hl~~--~~~~~R~~q~~~l~~~i~~~~~~-~~~pvIl~GDfN~~~~~~~~~~l~~~g 195 (298)
T 3mpr_A 137 LFFNLHMDH--IGKKARVESAFLVQEKMKELGRG-KNLPAILTGDFNVDQTHQSYDAFVSKG 195 (298)
T ss_dssp EEEEEECCS--SCHHHHHHHHHHHHHHHHHTTTT-SCCCEEEEEECSSCTTSHHHHHHHTTS
T ss_pred EEEEecCCC--CCHHHHHHHHHHHHHHHHHHhcC-CCCcEEEEEeCCCCCCCHHHHHHhcCC
Confidence 999999984 35678999999999988876421 368999999999999999999998753
No 6
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=99.97 E-value=3e-30 Score=245.36 Aligned_cols=166 Identities=16% Similarity=0.142 Sum_probs=115.5
Q ss_pred CCeeEEEEcccCcccccCcCCCCCCCCCccCCChHHHHHHHHHHHhhcCCceEeeecccChHhHHHHHhhCCceEEEecC
Q 012486 102 KDKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDHFDDLDDLLQMDGFRGVYKAR 181 (462)
Q Consensus 102 ~~~~rV~SyNIl~~~~~~~~~~~y~~~~~~~l~w~~R~~~I~~~I~~~~pDIIcLQEvd~~~~l~~~L~~~gY~~~~~~~ 181 (462)
..+||||||||.+.. ...|..|.+.|++.|+.++|||||||||+. +..+.|.+..+...+..
T Consensus 7 ~~~l~v~swNi~g~~---------------~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~--~~~~~l~~~~~~~~~~~- 68 (256)
T 4gz1_A 7 SSTISFITWNIDGLD---------------GCNLPERARGVCSCLALYSPDVVFLQEVIP--PYCAYLKKRAASYTIIT- 68 (256)
T ss_dssp GGEEEEEEEECCTTC---------------CTTHHHHHHHHHHHHHHHCCSEEEEEEECH--HHHHHHHHHCTTEEEEE-
T ss_pred CCcEEEEEEEcCCCc---------------CcCHHHHHHHHHHHHHHcCCCEEEEEcCCH--HHHHHHHhhccccceee-
Confidence 468999999998532 236889999999999999999999999963 11122222222222221
Q ss_pred CCCCCceeEEEEccCCceeeeeeeeeecccCCCCceeEEEEEEechhhhhhhhhcccccccCCCEEEEEeeCCCCCCCCc
Q 012486 182 TGDANDGCAIFWKEKLFTLLHQENIEFQNFGLRHNVAQLCVLKMNQSLLESAEESSLSMVSQSQSLVVGNIHVLFNPNRG 261 (462)
Q Consensus 182 ~~~~~~G~aI~~r~srf~l~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~g~~l~V~ntHL~~~p~~~ 261 (462)
.+....|++++++++++.+.......+....... ....+.+. ..|+.+.|+||||.+.+...
T Consensus 69 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----------------~~~~~~~v~~~Hl~~~~~~~ 130 (256)
T 4gz1_A 69 GNEEGYFTAILLKKGRVKFKSQEIIPFPNTKMMR-NLLCVNVS-----------------LGGNEFCLMTSHLESTREHS 130 (256)
T ss_dssp SCSSSSEEEEEEETTTEEEEEEEEEECTTCSSCC-EEEEEEEE-----------------ETTEEEEEEECBCCCSGGGH
T ss_pred ccccCCceEEEEEeccccceecccccCCcccccc-eEEEEEEE-----------------eCCEEEEEEeecccccccch
Confidence 2345678899999999998877766555432111 11222222 35789999999999866666
Q ss_pred hhHHHHHHHHHHHHHHHhhhcCCCCEEEcccCCCCCCchhHHHHh
Q 012486 262 DIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSPNSALYQFLA 306 (462)
Q Consensus 262 ~~R~~Q~~~Ll~~l~~~~~~~~~~pvIl~GDFNs~P~s~~y~~L~ 306 (462)
..|..|+..+++.+++.. .+.|+|||||||+.|.+..+..+.
T Consensus 131 ~~~~~q~~~~~~~l~~~~---~~~pvIl~GDfN~~~~~~~~~~~~ 172 (256)
T 4gz1_A 131 AERIRQLKTVLGKMQEAP---DSTTVIFAGDTNLRDQEVIKCGGL 172 (256)
T ss_dssp HHHHHHHHHHHHHHHHSC---TTSEEEEEEECCCCHHHHHHHTCS
T ss_pred hhhhHHHHHHhhhhhhcc---CcceEEEeCccCCCcchhhhhhhc
Confidence 788899988888876543 368999999999988776555443
No 7
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=99.97 E-value=6.9e-30 Score=243.17 Aligned_cols=161 Identities=23% Similarity=0.266 Sum_probs=113.3
Q ss_pred CCCeeEEEEcccCcccccCcCCCCCCCCCccCCChHHHHHHHHHHHhhcCCceEeeecccC--hHhHHHHHhhCCceEEE
Q 012486 101 FKDKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDH--FDDLDDLLQMDGFRGVY 178 (462)
Q Consensus 101 ~~~~~rV~SyNIl~~~~~~~~~~~y~~~~~~~l~w~~R~~~I~~~I~~~~pDIIcLQEvd~--~~~l~~~L~~~gY~~~~ 178 (462)
...+||||||||.+.. ...|..|.+.|++.|+.++|||||||||.. ...+...+ ++...+
T Consensus 10 ~~~~l~v~s~Ni~g~~---------------~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~~~~~~l~~~~---~~~~~~ 71 (256)
T 4fva_A 10 KGFEVSVMSWNIDGLD---------------GRSLLTRMKAVAHIVKNVNPDILFLQEVVDRDLAPIDKLQ---SLYKIY 71 (256)
T ss_dssp TTCEEEEEEEECCTTC---------------CTTHHHHHHHHHHHHHHHCCSEEEEEEECSTTCHHHHGGG---GTEEEE
T ss_pred CCCEEEEEEEecCCCC---------------CcCHHHHHHHHHHHHHHcCCCEEEEEecChhHhHHHHHhc---CCceEe
Confidence 4568999999997431 236889999999999999999999999964 23333222 333333
Q ss_pred ecCCCCCCceeEEEEccCCceeeeeeeeeecccCCCCceeEEEEEEechhhhhhhhhcccccccCCCEEEEEeeCCCCCC
Q 012486 179 KARTGDANDGCAIFWKEKLFTLLHQENIEFQNFGLRHNVAQLCVLKMNQSLLESAEESSLSMVSQSQSLVVGNIHVLFNP 258 (462)
Q Consensus 179 ~~~~~~~~~G~aI~~r~srf~l~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~g~~l~V~ntHL~~~p 258 (462)
. .......|++|+++ +++++.....+.+....... ....+.+. ..|+.|.|+||||.+..
T Consensus 72 ~-~~~~~~~g~~il~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----------------~~g~~~~v~~~Hl~~~~ 131 (256)
T 4fva_A 72 Y-SNKGCQYYTAILVS-KMFDVEKHDVIHFQNSGMYR-TLQILEGS-----------------IGGLKVFLLNTHLESTR 131 (256)
T ss_dssp E-SSTTSSSEEEEEEE-TTCEEEEEEEEECTTCSSCC-EEEEEEEE-----------------ETTEEEEEEEEECCCSG
T ss_pred e-cCCCCCcceEEEEe-ecccceecccccCCCCcccc-eeEEEEEE-----------------eCCeEEEEEEecCCCCC
Confidence 2 23445789999987 46777777767665532211 12222222 35789999999998755
Q ss_pred CCchhHHHHHHHHHHHHHHHhhhcCCCCEEEcccCCCCCCc
Q 012486 259 NRGDIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSPNS 299 (462)
Q Consensus 259 ~~~~~R~~Q~~~Ll~~l~~~~~~~~~~pvIl~GDFNs~P~s 299 (462)
.....|..|++.+++.+..+....++.|+|||||||..|.+
T Consensus 132 ~~~~~~~~q~~~~~~~~~~~~~~~~~~~vIl~GDfN~~~~~ 172 (256)
T 4fva_A 132 EHRPQRCAQFGFCMDKVREIIAQNPGALVFFGGDLNLRDEE 172 (256)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEECCCCGGG
T ss_pred cchHHHHHHHHHHHHHhhhhhhccCCCcEEEeccCCCCcch
Confidence 55567888988888877766555567899999999988765
No 8
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=99.97 E-value=3.3e-30 Score=242.13 Aligned_cols=163 Identities=19% Similarity=0.219 Sum_probs=115.8
Q ss_pred CeeEEEEcccCcccccCcCCCCCCCCCccCCChHHHHHHHHHHHhhcCCceEeeecccChHhHHHHHhhCCceEEEecCC
Q 012486 103 DKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDHFDDLDDLLQMDGFRGVYKART 182 (462)
Q Consensus 103 ~~~rV~SyNIl~~~~~~~~~~~y~~~~~~~l~w~~R~~~I~~~I~~~~pDIIcLQEvd~~~~l~~~L~~~gY~~~~~~~~ 182 (462)
.+||||||||++.. ...|..|.+.|++.|+.++|||||||||+. +.+.......++...+..
T Consensus 2 ~~l~v~t~Ni~g~~---------------~~~~~~r~~~i~~~i~~~~pDIi~LQEv~~-~~~~~l~~~~~~~~~~~~-- 63 (250)
T 4f1h_A 2 SKLSIISWNVDGLD---------------TLNLADRARGLCSYLALYTPDVVFLQELIP-AYVQYLKKRAVSYLFFEG-- 63 (250)
T ss_dssp CCEEEEEEECCTTC---------------CTTHHHHHHHHHHHHHHHCCSEEEEEEECH-HHHHHHHHHCTTEEEEES--
T ss_pred CeEEEEEEEeCCCC---------------CcCHHHHHHHHHHHHHHcCCCEEEEEeCCH-HHHHHHHHhccCceeecc--
Confidence 47999999998531 246889999999999999999999999974 222222333444444432
Q ss_pred CCCCceeEEEEccCCceeeeeeeeeecccCCCCceeEEEEEEechhhhhhhhhcccccccCCCEEEEEeeCCCCCCCCch
Q 012486 183 GDANDGCAIFWKEKLFTLLHQENIEFQNFGLRHNVAQLCVLKMNQSLLESAEESSLSMVSQSQSLVVGNIHVLFNPNRGD 262 (462)
Q Consensus 183 ~~~~~G~aI~~r~srf~l~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~g~~l~V~ntHL~~~p~~~~ 262 (462)
.....|.+++++++++++++...+.+....... .++.+.. ...+..+.|+|+|+.+.+....
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---------------~~~~~~~~v~~~hl~~~~~~~~ 125 (250)
T 4f1h_A 64 SDDGYFTGIMLRKSRVKFLESEIICFPTTQMMR---NLLIAQV---------------TFSGQKLYLMTSHLESCKNQSQ 125 (250)
T ss_dssp CSSSSEEEEEEETTTCEEEEEEEEECTTCSSCC---EEEEEEE---------------EETTEEEEEEECBCCCSGGGHH
T ss_pred cccccCceeEEeeccccceecccccccCccccc---eEEEEEE---------------ecCCcEEEEeccccccccccHH
Confidence 234567778888899999998887766542211 1222222 1357899999999998766667
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCCCEEEcccCCCCCCchhHHH
Q 012486 263 IKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSPNSALYQF 304 (462)
Q Consensus 263 ~R~~Q~~~Ll~~l~~~~~~~~~~pvIl~GDFNs~P~s~~y~~ 304 (462)
.|..|++.+++.+++.. ...|+|||||||+.|.+..+..
T Consensus 126 ~r~~q~~~~~~~l~~~~---~~~pvIl~GDfN~~~~~~~~~~ 164 (250)
T 4f1h_A 126 ERTKQLRVVLQKIKEAP---EDAIVIFAGDTNLRDAEVANVG 164 (250)
T ss_dssp HHHHHHHHHHHHHHHSC---TTEEEEEEEECCCCHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhcC---CCCCEEEEEecCCCCcchhhhh
Confidence 88999998888886543 3579999999999887654433
No 9
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=99.97 E-value=2.2e-29 Score=255.68 Aligned_cols=162 Identities=22% Similarity=0.251 Sum_probs=115.2
Q ss_pred CCCCeeEEEEcccCcccccCcCCCCCCCCCccCCChHHHHHHHHHHHhhcCCceEeeecccC--hHhHHHHHhhCCceEE
Q 012486 100 KFKDKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDH--FDDLDDLLQMDGFRGV 177 (462)
Q Consensus 100 ~~~~~~rV~SyNIl~~~~~~~~~~~y~~~~~~~l~w~~R~~~I~~~I~~~~pDIIcLQEvd~--~~~l~~~L~~~gY~~~ 177 (462)
..+..||||||||.+.. ...|..|...|++.|+.++|||||||||.. +..+...+ .+|..+
T Consensus 115 ~~~~~lkVlSWNI~Gl~---------------~~~~~~R~~~I~~~I~~~~PDIV~LQEv~~~~~~~l~~~~--~~y~~~ 177 (362)
T 4gew_A 115 LKGFEVSVMSWNIDGLD---------------GRSLLTRMKAVAHIVKNVNPDILFLQEVVDRDLAPIDKLQ--SLYKIY 177 (362)
T ss_dssp TTTCEEEEEEEECCTTC---------------CTTHHHHHHHHHHHHHHHCCSEEEEEEECSTTCHHHHGGG--GTEEEE
T ss_pred CCCCeEEEEEEEeCCCC---------------CcCHHHHHHHHHHHHHHcCCCEEEEEcCChhHhHHHHHhc--CCceEE
Confidence 34578999999998532 235788999999999999999999999963 33443333 245544
Q ss_pred EecCCCCCCceeEEEEccCCceeeeeeeeeecccCCCCceeEEEEEEechhhhhhhhhcccccccCCCEEEEEeeCCCCC
Q 012486 178 YKARTGDANDGCAIFWKEKLFTLLHQENIEFQNFGLRHNVAQLCVLKMNQSLLESAEESSLSMVSQSQSLVVGNIHVLFN 257 (462)
Q Consensus 178 ~~~~~~~~~~G~aI~~r~srf~l~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~g~~l~V~ntHL~~~ 257 (462)
+. ...+..|+|||+|+ ++++.....+.+...... .....+.+. ..|..|.|+||||.+.
T Consensus 178 ~~--~~~~~~G~aIlsk~-~i~~~~~~~~~~~~~~~~-r~~l~~~i~-----------------~~g~~l~v~ntHL~s~ 236 (362)
T 4gew_A 178 YS--NKGCQYYTAILVSK-MFDVEKHDVIHFQNSGMY-RTLQILEGS-----------------IGGLKVFLLNTHLEST 236 (362)
T ss_dssp ES--STTSSSEEEEEEET-TEEEEEEEEEECTTCSSC-CEEEEEEEE-----------------ETTEEEEEEEEECCCS
T ss_pred eC--CCCCCceEEEEEec-cCccccccccCCCCCccc-ceEEEEEEE-----------------ECCEEEEEEEecCCcc
Confidence 43 33457899999874 677776666655543221 122223332 2478999999999875
Q ss_pred CCCchhHHHHHHHHHHHHHHHhhhcCCCCEEEcccCCCCCCc
Q 012486 258 PNRGDIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSPNS 299 (462)
Q Consensus 258 p~~~~~R~~Q~~~Ll~~l~~~~~~~~~~pvIl~GDFNs~P~s 299 (462)
......|..|++.++..+..+....++.|+|||||||..|.+
T Consensus 237 ~~~~~~R~~Q~~~l~~~~~~~~~~~~~~pvIl~GDFN~~p~~ 278 (362)
T 4gew_A 237 REHRPQRCAQFGFCMDKVREIIAQNPGALVFFGGDLNLRDEE 278 (362)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECCCCGGG
T ss_pred ccchhHHHHHHHHHHHHhHhhhhcCCCCCeEEeecCCCCCcc
Confidence 545567889999888888776554567899999999988765
No 10
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=99.96 E-value=2.5e-29 Score=241.74 Aligned_cols=166 Identities=14% Similarity=0.167 Sum_probs=120.4
Q ss_pred CeeEEEEcccCcccccCcCCCCCCCCCccCCChHHHHHHHHHHHhhcCCceEeeecccCh---------------H-hHH
Q 012486 103 DKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDHF---------------D-DLD 166 (462)
Q Consensus 103 ~~~rV~SyNIl~~~~~~~~~~~y~~~~~~~l~w~~R~~~I~~~I~~~~pDIIcLQEvd~~---------------~-~l~ 166 (462)
+.||||||||++.. ...+..|...|++.|..++|||||||||+.. . .+.
T Consensus 2 ~~l~v~t~Ni~~~~---------------~~~~~~~~~~i~~~i~~~~~DIi~LQEv~~~~~~~~~~~~~~~d~~~~~~~ 66 (266)
T 3teb_A 2 NAMKILTVNVHAWL---------------EENQMEKIDILARTIAEKQYDVIAMQEVNQLMNNKIIFDDIREENYAWVLL 66 (266)
T ss_dssp -CEEEEEEECCTTC---------------STTHHHHHHHHHHHHHHHTCSEEEEEEEEEETTSCEEETTEETTCHHHHHH
T ss_pred CceEEEEEeccccc---------------CcchhHHHHHHHHHHHhcCCCEEEEEEccccccccccccccccccHHHHHH
Confidence 56999999998542 1256788999999999999999999999521 1 145
Q ss_pred HHHhhCC---ceEEEe---cCCCCCCceeEEEEccCCceeeeeeeeeecccC----CCCceeEEEEEEechhhhhhhhhc
Q 012486 167 DLLQMDG---FRGVYK---ARTGDANDGCAIFWKEKLFTLLHQENIEFQNFG----LRHNVAQLCVLKMNQSLLESAEES 236 (462)
Q Consensus 167 ~~L~~~g---Y~~~~~---~~~~~~~~G~aI~~r~srf~l~~~~~i~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~ 236 (462)
+.|.+.+ |...+. ........|+||| +|+++++...+.++... +.......+.++
T Consensus 67 ~~l~~~~~~~y~~~~~~~~~~~~~~~~g~ail---sr~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~------------ 131 (266)
T 3teb_A 67 ETLQKYTDTDYYLHWSNSHIGFGKYNEGVAVI---TRHKIKAEDEFYCTFAQSVRTISARRIVSITIN------------ 131 (266)
T ss_dssp HHHTTTCCSCCEEEEEEEEECSTTEEEEEEEE---ESSCCSEEEEEECSSCCCTTCTTCCEEEEEEEE------------
T ss_pred HHHHHhCCCCeEEEEeccccCccccCCeEEEE---ECceecCceeEEeCCCCCCCCcccceEEEEEEE------------
Confidence 6676655 765532 1223345799999 78999998888877532 112222222222
Q ss_pred ccccccCCCEEEEEeeCCCCCCCCchhHHHHHHHHHHHHHHHhhhcCCCCEEEcccCCCCC--CchhHHHHhcCC
Q 012486 237 SLSMVSQSQSLVVGNIHVLFNPNRGDIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSP--NSALYQFLASSE 309 (462)
Q Consensus 237 ~l~~~~~g~~l~V~ntHL~~~p~~~~~R~~Q~~~Ll~~l~~~~~~~~~~pvIl~GDFNs~P--~s~~y~~L~~~~ 309 (462)
..++.|.|+||||.+.+.....|..|++.|++.+.+ ..|+|||||||+.| ++..|+.|.+.+
T Consensus 132 -----~~~~~~~v~~~Hl~~~~~~~~~r~~q~~~l~~~~~~------~~~~il~GDfN~~~~~~~~~~~~l~~~~ 195 (266)
T 3teb_A 132 -----YEGQDIEFYSCHMNLPNCETEDMGKNIQTILNRTQN------SNLKILMGDFNTDAIGNVAAYENILSQG 195 (266)
T ss_dssp -----ETTEEEEEEEEECCCTTCTTCCHHHHHHHHHTSSCS------CCEEEEEEECCCCTTTCHHHHHHHHTTT
T ss_pred -----eCCeEEEEEEecCCCccCChHHHHHHHHHHHHHHhc------CCcEEEEeECCCCCCCCCcHHHhhcccc
Confidence 247899999999998655566899999888776543 57999999999999 999999987643
No 11
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=99.96 E-value=1e-28 Score=242.73 Aligned_cols=174 Identities=17% Similarity=0.217 Sum_probs=119.2
Q ss_pred CCCeeEEEEcccCcccccCcCCCCCCCCCccCCCh--HHHHHHHHHHHhhcCCceEeeecccCh---HhHHHHHh-hCCc
Q 012486 101 FKDKFVVVSYNILGVENALKHPDLYDKVPPKFLKW--ERRKKLIREEMSSYNASILCLQEVDHF---DDLDDLLQ-MDGF 174 (462)
Q Consensus 101 ~~~~~rV~SyNIl~~~~~~~~~~~y~~~~~~~l~w--~~R~~~I~~~I~~~~pDIIcLQEvd~~---~~l~~~L~-~~gY 174 (462)
.+..||||||||+.... ..+ -.| ..|...|.+.|...+|||||||||+.. ..+...|. .++|
T Consensus 7 ~~~~lrv~t~Ni~~~~~-----~~~-------~~~~~~~r~~~i~~~~~~~~~DIv~LQEv~~~~~~~~l~~~l~~~~~~ 74 (301)
T 1zwx_A 7 YPGNFKITSHNVYLFSR-----NIY-------PNWGQMHRADLIAQADYMKNNDVVILNEAFDTSASHRLLNNLREMYPH 74 (301)
T ss_dssp CCCSCEEEEEEEEECCT-----TTS-------TTSCHHHHHHHHHTSGGGSSCSEEEEEEECSHHHHHHHHHHTTTTCCE
T ss_pred CCCceEEEEEECccCCc-----ccc-------CCCCHHHHHHHHHHhhccCCCCEEEEeccccHHHHHHHHHHHhhcCCc
Confidence 34579999999997521 111 135 678899998899999999999999853 23444444 3455
Q ss_pred eEEEecCC--------------CCCCceeEEEEccCCceeeeeeeeeecccC----CCCceeEEEEEEechhhhhhhhhc
Q 012486 175 RGVYKART--------------GDANDGCAIFWKEKLFTLLHQENIEFQNFG----LRHNVAQLCVLKMNQSLLESAEES 236 (462)
Q Consensus 175 ~~~~~~~~--------------~~~~~G~aI~~r~srf~l~~~~~i~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~ 236 (462)
...+..+. .....|+||+ |||+++....+.|+... ........+.++
T Consensus 75 ~~~~~~~~~~~~~~~~g~~~~~~~~~~G~ail---Sr~pi~~~~~~~~~~~~~~~~~~~r~~~~~~~~------------ 139 (301)
T 1zwx_A 75 QTPVIGRSKHGWDKTEGNYSNFALEDGGVAVV---SQWPIVEKSQHIFQRGGGADRLSNKGFAYVKIM------------ 139 (301)
T ss_dssp ECCCTTSCSTTCSEEEC-----CCBCCCCEEE---ESSCEEEEEEEECSCCCGGGGGBCCEEEEEEEE------------
T ss_pred cccccCCccccccccccccccccccCCCEEEE---ecCCcccceEEEecCCCCcccccCCCeEEEEEE------------
Confidence 43222111 1234799999 89999998887776321 111122333333
Q ss_pred ccccccCCCEEEEEeeCCCCCCC------CchhHHHHHHHHHHHHHHHhhhcCCCCEEEcccCCCCCCchhHHHHhc
Q 012486 237 SLSMVSQSQSLVVGNIHVLFNPN------RGDIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSPNSALYQFLAS 307 (462)
Q Consensus 237 ~l~~~~~g~~l~V~ntHL~~~p~------~~~~R~~Q~~~Ll~~l~~~~~~~~~~pvIl~GDFNs~P~s~~y~~L~~ 307 (462)
..|+.|.|+||||.+... ....|..|+..|.+.+++... ..+.|+|||||||+.|++..|+.|..
T Consensus 140 -----~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~-~~~~pvIl~GDfN~~~~~~~~~~l~~ 210 (301)
T 1zwx_A 140 -----KNGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFIAKKNI-PKDEIIFIGGDLNVNYGTDEYHDMLK 210 (301)
T ss_dssp -----ETTEEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHTC-CTTSEEEEEEECCCCTTSHHHHHHHH
T ss_pred -----ECCEEEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHHHhCC-CCCCeEEEEeeCCCCCCcHHHHHHHH
Confidence 247899999999986421 235689999999988876521 13579999999999999999998875
No 12
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=99.94 E-value=4.2e-26 Score=224.36 Aligned_cols=174 Identities=17% Similarity=0.188 Sum_probs=115.2
Q ss_pred CCCeeEEEEcccCcccccCcCCCCCCCCCccCCCh--HHHHHHHHHHHhhcCCceEeeecccChH---hHHHHHh-hCCc
Q 012486 101 FKDKFVVVSYNILGVENALKHPDLYDKVPPKFLKW--ERRKKLIREEMSSYNASILCLQEVDHFD---DLDDLLQ-MDGF 174 (462)
Q Consensus 101 ~~~~~rV~SyNIl~~~~~~~~~~~y~~~~~~~l~w--~~R~~~I~~~I~~~~pDIIcLQEvd~~~---~l~~~L~-~~gY 174 (462)
....||||||||+.... .. .-.| ..|...+...+...+|||||||||+... .+...|. .++|
T Consensus 6 ~~~~lrv~t~Ni~~~~~-----~~-------~~~~~~~~r~~~~~~~~~~~~~DIv~LQEv~~~~~~~~l~~~l~~~~~~ 73 (306)
T 2ddr_A 6 QNDTLKVMTHNVYMLST-----NL-------YPNWGQTERADLIGAADYIKNQDVVILNEVFDNSASDRLLGNLKKEYPN 73 (306)
T ss_dssp -CCEEEEEEEEEEECCT-----TT-------CTTSCHHHHHHHHHHCSTTCSCSEEEEEEECCHHHHHHHHHHHTTTCCE
T ss_pred CCCEEEEEEEECccCcc-----cc-------cCCCCHHHHHHHHHHHhhccCCCEEEEEeecCHHHHHHHHHHHhhhCCc
Confidence 34689999999997531 01 1135 6788888888888999999999997632 3443443 2333
Q ss_pred eE-------------EEec--CCCCCCceeEEEEccCCceeeeeeeeeecccC----CCCceeEEEEEEechhhhhhhhh
Q 012486 175 RG-------------VYKA--RTGDANDGCAIFWKEKLFTLLHQENIEFQNFG----LRHNVAQLCVLKMNQSLLESAEE 235 (462)
Q Consensus 175 ~~-------------~~~~--~~~~~~~G~aI~~r~srf~l~~~~~i~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~ 235 (462)
.. .+.. .......|+||+ ||++++....+.|.... ........+.++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ail---Sr~pi~~~~~~~~~~~~~~~~~~~r~~~~~~i~----------- 139 (306)
T 2ddr_A 74 QTAVLGRSSGSEWDKTLGNYSSSTPEDGGVAIV---SKWPIAEKIQYVFAKGCGPDNLSNKGFVYTKIK----------- 139 (306)
T ss_dssp ECCCTTSCCSTTSSEEEESCCTTCSSCCCCEEE---ESSCEEEEEEEECSCCC----CCCCEEEEEEEE-----------
T ss_pred eeeccCcccccccccccccccccCccCCeEEEE---ECCCcccccEEEcCCCCCcchhcCCCeEEEEEE-----------
Confidence 21 1111 112345799999 88999887777665321 111122333333
Q ss_pred cccccccCCCEEEEEeeCCCCCC------CCchhHHHHHHHHHHHHHHHhhhcCCCCEEEcccCCCCC------CchhHH
Q 012486 236 SSLSMVSQSQSLVVGNIHVLFNP------NRGDIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSP------NSALYQ 303 (462)
Q Consensus 236 ~~l~~~~~g~~l~V~ntHL~~~p------~~~~~R~~Q~~~Ll~~l~~~~~~~~~~pvIl~GDFNs~P------~s~~y~ 303 (462)
..|+.|.|+||||.+.. .....|..|+..|.+.++.... ..+.|+|||||||+.| ++..|+
T Consensus 140 ------~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~-~~~~pvil~GDfN~~~~~~d~~~s~~~~ 212 (306)
T 2ddr_A 140 ------KNDRFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFIKNKNI-PNNEYVLIGGDMNVNKINAENNNDSEYA 212 (306)
T ss_dssp ------ETTEEEEEEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTC-CTTSCEEEEEECCCCCTTTSSCTTSHHH
T ss_pred ------eCCEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcC-CCCCEEEEEeeCCCCcccccccCCHHHH
Confidence 23789999999998642 1345689999999888876521 1257999999999999 888888
Q ss_pred HHhc
Q 012486 304 FLAS 307 (462)
Q Consensus 304 ~L~~ 307 (462)
.|..
T Consensus 213 ~l~~ 216 (306)
T 2ddr_A 213 SMFK 216 (306)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
No 13
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=99.93 E-value=5.4e-26 Score=226.44 Aligned_cols=176 Identities=15% Similarity=0.120 Sum_probs=121.5
Q ss_pred CCCeeEEEEcccCcccccCcCCCCCCCCCccCCChHHHHHHHHHHHhhcCCceEeeecccCh---HhHHHHHhh-CCceE
Q 012486 101 FKDKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDHF---DDLDDLLQM-DGFRG 176 (462)
Q Consensus 101 ~~~~~rV~SyNIl~~~~~~~~~~~y~~~~~~~l~w~~R~~~I~~~I~~~~pDIIcLQEvd~~---~~l~~~L~~-~gY~~ 176 (462)
....||||||||+..... ......|..|.+.|...|...+|||||||||+.. ..+...|.+ ++|..
T Consensus 26 ~~~~lrV~T~Ni~~~~~~----------~~~~~~~~~R~~~i~~~~~~~~pDIv~LQEv~~~~~~~~l~~~L~~~~py~~ 95 (317)
T 3i41_A 26 DDTDLKLVSHNVYMLSTV----------LYPNWGQYKRADLIGQSSYIKNNDVVIFNEAFDNGASDKLLSNVKKEYPYQT 95 (317)
T ss_dssp --CCCCEEEEEEEECCTT----------TSTTSCHHHHHHHHHHCSTTSSCSEEEEEEECSHHHHHHHHHHTTTTCCEEC
T ss_pred CCCceEEEEEecccCccc----------cCCCccHHHHHHHHHHHhhccCCCEEEEEeeccHHHHHHHHHHHHHhCCccc
Confidence 457899999999975322 1123468999999999998899999999999763 334455543 44442
Q ss_pred EEecCCCC--------------CCceeEEEEccCCceeeeeeeeeecccC-C--CCc-eeEEEEEEechhhhhhhhhccc
Q 012486 177 VYKARTGD--------------ANDGCAIFWKEKLFTLLHQENIEFQNFG-L--RHN-VAQLCVLKMNQSLLESAEESSL 238 (462)
Q Consensus 177 ~~~~~~~~--------------~~~G~aI~~r~srf~l~~~~~i~~~~~~-~--~~~-~~~~~~l~~~~~~~~~~~~~~l 238 (462)
.+...... ...|++|+ |||+++....+.|.... . ..+ ....+.+.
T Consensus 96 ~~~g~~~~~~~~~~~~y~~~~~~~~G~~il---Sr~Pi~~~~~~~~~~~~~~d~~~~r~~~~~~i~-------------- 158 (317)
T 3i41_A 96 PVLGRSQSGWDKTEGSYSSTVAEDGGVAIV---SKYPIKEKIQHVFKSGCGFDNDSNKGFVYTKIE-------------- 158 (317)
T ss_dssp CCTTSCSTTCSEEEESCCSSCSBCCCCEEE---ESSCEEEEEEEECSCCCSSGGGBCCEEEEEEEE--------------
T ss_pred ccCCccccCccCcccccccccccCCccEEE---eCCCCccceeEECCCCCCcccccCcceEEEEEE--------------
Confidence 22211110 12599999 89999998887776421 1 111 11222222
Q ss_pred ccccCCCEEEEEeeCCCCCCC------CchhHHHHHHHHHHHHHHHhhhcCCCCEEEcccCCCCCCchhHHHHhc
Q 012486 239 SMVSQSQSLVVGNIHVLFNPN------RGDIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSPNSALYQFLAS 307 (462)
Q Consensus 239 ~~~~~g~~l~V~ntHL~~~p~------~~~~R~~Q~~~Ll~~l~~~~~~~~~~pvIl~GDFNs~P~s~~y~~L~~ 307 (462)
..|+.|.|+||||.+... ....|..|+..|.+.++.... ..+.|+|||||||+.|.+..|+.|..
T Consensus 159 ---~~g~~v~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~-~~~~pvIl~GDfN~~~~s~~~~~l~~ 229 (317)
T 3i41_A 159 ---KNGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKKNI-PKDETVYIGGDLNVNKGTPEFKDMLK 229 (317)
T ss_dssp ---ETTEEEEEEEEECCCCCSSSCTTHHHHHHHHHHHHHHHHHHHHTC-CTTSCEEEEEECCCCTTSHHHHHHHH
T ss_pred ---ECCEEEEEEEECCCCCCCCCcccccHHHHHHHHHHHHHHHHHhcc-CCCCeEEEEeECCCCCCCHHHHHHHH
Confidence 247899999999987432 245799999999999887521 13689999999999999999999986
No 14
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=99.93 E-value=4.3e-25 Score=210.94 Aligned_cols=147 Identities=17% Similarity=0.170 Sum_probs=97.9
Q ss_pred eEEEEcccCcccccCcCCCCCCCCCccCCChHHHHHHHHHHHhhcCCceEeeecccChH-h-HHHHHhhCCceEEEecCC
Q 012486 105 FVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDHFD-D-LDDLLQMDGFRGVYKART 182 (462)
Q Consensus 105 ~rV~SyNIl~~~~~~~~~~~y~~~~~~~l~w~~R~~~I~~~I~~~~pDIIcLQEvd~~~-~-l~~~L~~~gY~~~~~~~~ 182 (462)
||||||||++ |..|.+.|++.|+.++||||||||+.... . ....+...||..++..
T Consensus 1 lrv~t~Nv~~--------------------~~~~~~~i~~~i~~~~~DIv~LQE~~~~~~~~~~~~~~~~gy~~~~~~-- 58 (256)
T 2jc4_A 1 MKITTWNVNS--------------------LNVRLPQVQNLLADNPPDILVLQELKLDQDKFPAAALQMMGWHCVWSG-- 58 (256)
T ss_dssp CEEEEEECSC--------------------HHHHHHHHHHHHHSSCCSEEEEECCCSCGGGSCHHHHHTTTCEEEEEC--
T ss_pred CEEEEEEcCC--------------------cHHHHHHHHHHHHhcCCCEEEEEeeccchhcCCHhHHhhcCCeEEECC--
Confidence 6999999983 44678889999999999999999997522 2 2455667899877653
Q ss_pred CCCCceeEEEEccCCceeeeeeeeeecccCCCCceeEEEEEEechhhhhhhhhcccccccCCCEEEEEeeCCCCCCCCc-
Q 012486 183 GDANDGCAIFWKEKLFTLLHQENIEFQNFGLRHNVAQLCVLKMNQSLLESAEESSLSMVSQSQSLVVGNIHVLFNPNRG- 261 (462)
Q Consensus 183 ~~~~~G~aI~~r~srf~l~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~g~~l~V~ntHL~~~p~~~- 261 (462)
..+..|+||++| +++..... .+.... .+..+.++.+++ + .+.|+|+|+......+
T Consensus 59 ~~~~~G~ailsr---~~~~~~~~-~~~~~~-~~~~~~~~~~~~------------------~-~~~v~~~h~~~~~~~~~ 114 (256)
T 2jc4_A 59 QKTYNGVAIVSR---SVPQDVHF-GLPALP-DDPQRRVIAATV------------------S-GVRVINVYCVNGEALDS 114 (256)
T ss_dssp CSSSCCEEEEES---SCCEEEEE-SCTTST-TCCSCCEEEEEE------------------T-TEEEEEEECCCCCSTTS
T ss_pred CCcceEEEEEEC---CChHHhee-cCCCCc-cCCcCcEEEEEe------------------C-CEEEEEEEecCCCCCCc
Confidence 234679999955 45543322 122110 111223333332 2 5999999997543211
Q ss_pred ---hhHHHHHHHHHHHHHHHhhhcCCCCEEEcccCCCCCCc
Q 012486 262 ---DIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSPNS 299 (462)
Q Consensus 262 ---~~R~~Q~~~Ll~~l~~~~~~~~~~pvIl~GDFNs~P~s 299 (462)
+.|..|+..|.+.+..+.. .+.|+|||||||+.|.+
T Consensus 115 ~~~~~r~~~~~~l~~~~~~~~~--~~~~~il~GDFN~~~~~ 153 (256)
T 2jc4_A 115 PKFKYKEQWFAALTEFVRDEMT--RHGKLVLLGDFNIAPAD 153 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT--TCSSEEEEEECCCCCSG
T ss_pred HhHHHHHHHHHHHHHHHHHHhc--CCCCEEEEeECCCCCch
Confidence 2355677777777766532 36899999999999986
No 15
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=99.93 E-value=8e-26 Score=217.48 Aligned_cols=153 Identities=20% Similarity=0.183 Sum_probs=100.6
Q ss_pred eEEEEcccCcccccCcCCCCCCCCCccCCChHHHHHHHHHHHhhcCCceEeeecccChH-h-HHHHHhhCCceEEEecCC
Q 012486 105 FVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDHFD-D-LDDLLQMDGFRGVYKART 182 (462)
Q Consensus 105 ~rV~SyNIl~~~~~~~~~~~y~~~~~~~l~w~~R~~~I~~~I~~~~pDIIcLQEvd~~~-~-l~~~L~~~gY~~~~~~~~ 182 (462)
||||||||.+.. .|.+.|++.|...+||||||||+.... . ....+...||..++...
T Consensus 1 lrv~t~Nv~~~~--------------------~~~~~i~~~i~~~~~Dii~LQE~~~~~~~~~~~~l~~~gy~~~~~~~- 59 (268)
T 1ako_A 1 MKFVSFNINGLR--------------------ARPHQLEAIVEKHQPDVIGLQETKVHDDMFPLEEVAKLGYNVFYHGQ- 59 (268)
T ss_dssp CEEEEEECSCGG--------------------GCHHHHHHHHHHHCCSEEEEECCCCCGGGCCHHHHHHTTCEEEEEEE-
T ss_pred CEEEEEehhHHH--------------------HHHHHHHHHHHHcCCCEEEEEeccCChhhCCHhHhccCCCcEEEeCC-
Confidence 699999998531 246789999999999999999997532 2 24556667998777542
Q ss_pred CCCCceeEEEEccCCceeeeeeeeeecccC-CCCceeEEEEEEechhhhhhhhhcccccccCCCEEEEEeeCCCCCCCCc
Q 012486 183 GDANDGCAIFWKEKLFTLLHQENIEFQNFG-LRHNVAQLCVLKMNQSLLESAEESSLSMVSQSQSLVVGNIHVLFNPNRG 261 (462)
Q Consensus 183 ~~~~~G~aI~~r~srf~l~~~~~i~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~g~~l~V~ntHL~~~p~~~ 261 (462)
.+..|+|||+|. ++..... .+.... ........+.+.. .++.|.|+|||+.+.....
T Consensus 60 -~~~~G~ailsr~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~v~~~Hl~~~~~~~ 117 (268)
T 1ako_A 60 -KGHYGVALLTKE---TPIAVRR-GFPGDDEEAQRRIIMAEIPS-----------------LLGNVTVINGYFPQGESRD 117 (268)
T ss_dssp -TTEEEEEEEESS---CCSEEEE-SSTTCCHHHHTTEEEEEEEE-----------------TTEEEEEEEEECCCCCBTT
T ss_pred -CCcceEEEEEec---Ccceeee-CCCCcccccCCCEEEEEEEc-----------------CCCeEEEEEEEecCCCCcc
Confidence 346899999654 4433221 121100 0011122333332 2568999999998643211
Q ss_pred -----hhHHHHHHHHHHHHHHHhhhcCCCCEEEcccCCCCCCchhH
Q 012486 262 -----DIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSPNSALY 302 (462)
Q Consensus 262 -----~~R~~Q~~~Ll~~l~~~~~~~~~~pvIl~GDFNs~P~s~~y 302 (462)
..|..|+..|.+.++.+.. .+.|+|||||||+.|.+..+
T Consensus 118 ~~~~~~~r~~~~~~l~~~~~~~~~--~~~~~Il~GDFN~~~~~~~~ 161 (268)
T 1ako_A 118 HPIKFPAKAQFYQNLQNYLETELK--RDNPVLIMGDMNISPTDLDI 161 (268)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHCC--TTSCEEEEEECCCCCSGGGB
T ss_pred cchhHHHHHHHHHHHHHHHHHhhh--CCCCEEEEeECCCCCchhcc
Confidence 2577888888888776532 36899999999999987554
No 16
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=99.92 E-value=5.3e-25 Score=210.64 Aligned_cols=148 Identities=16% Similarity=0.212 Sum_probs=92.4
Q ss_pred eEEEEcccCcccccCcCCCCCCCCCccCCChHHHHH-HHHHHHhhcCCceEeeecccCh-HhHHHHH-hhCCceEEEecC
Q 012486 105 FVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKK-LIREEMSSYNASILCLQEVDHF-DDLDDLL-QMDGFRGVYKAR 181 (462)
Q Consensus 105 ~rV~SyNIl~~~~~~~~~~~y~~~~~~~l~w~~R~~-~I~~~I~~~~pDIIcLQEvd~~-~~l~~~L-~~~gY~~~~~~~ 181 (462)
||||||||.... .+.+ .|++.|..++||||||||++.. ..+...+ ...||..++...
T Consensus 2 l~v~t~Ni~~~~--------------------~~~~~~i~~~i~~~~~DIi~LQE~~~~~~~~~~~l~~~~gy~~~~~~~ 61 (259)
T 2jc5_A 2 LKIISANVNGIR--------------------SAYKKGFYEYIAASGADIVCVQELKAQEADLSADMKNPHGMHGHWHCA 61 (259)
T ss_dssp EEEEEEECSSHH--------------------HHHHTTHHHHHHHTTCSEEEEECCCCCGGGCCHHHHSGGGCEEEEECC
T ss_pred cEEEEEeeccHH--------------------HHHHhHHHHHHHhcCCCEEEEEEecchhhccChhhccccCCeEEEecc
Confidence 899999998532 1123 3899999999999999999753 2342333 346888777643
Q ss_pred CCCCCceeEEEEccCCceeeeeeeeeecccCCCCceeEEEEEEechhhhhhhhhcccccccCCCEEEEEeeCCCCCCCCc
Q 012486 182 TGDANDGCAIFWKEKLFTLLHQENIEFQNFGLRHNVAQLCVLKMNQSLLESAEESSLSMVSQSQSLVVGNIHVLFNPNRG 261 (462)
Q Consensus 182 ~~~~~~G~aI~~r~srf~l~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~g~~l~V~ntHL~~~p~~~ 261 (462)
...+..|+|||+|. ++..... .+.... .+..++++.++ .+.+.|+|+|+.+... +
T Consensus 62 ~~~~~~G~ailsr~---~~~~~~~-~~~~~~-~~~~~r~~~~~-------------------~~~~~v~~~h~~~~~~-~ 116 (259)
T 2jc5_A 62 EKRGYSGVAVYSKR---KPDNVQI-GMGIEE-FDREGRFVRCD-------------------FGRLSVISLYLPSGSS-A 116 (259)
T ss_dssp SSTTCCCEEEEESS---CCSEEEE-SCSCHH-HHTTCCEEEEE-------------------ETTEEEEEEECCCCTT-C
T ss_pred CCCCcceEEEEEec---CceeEEe-CCCCCc-cCCCCeEEEEE-------------------cCCEEEEEEeccCCCC-C
Confidence 33456899999655 4433222 111000 01112222222 1369999999986432 3
Q ss_pred hhHH----HHHHHHHHHHHHHhhhcCCCCEEEcccCCCCCCc
Q 012486 262 DIKL----GQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSPNS 299 (462)
Q Consensus 262 ~~R~----~Q~~~Ll~~l~~~~~~~~~~pvIl~GDFNs~P~s 299 (462)
..|. .|+..|.+.+..+.. .+.|+|||||||+.|++
T Consensus 117 ~~r~~~~~~~~~~l~~~~~~~~~--~~~~~Il~GDFN~~~~~ 156 (259)
T 2jc5_A 117 EERQQVKYRFLDAFYPMLEAMKN--EGRDIVVCGDWNIAHQN 156 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--TCSEEEEEEECCCCCSG
T ss_pred cHHHHHHHHHHHHHHHHHHHHHh--cCCCEEEEeeCCCCCch
Confidence 3343 456666666665532 36899999999999876
No 17
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=99.90 E-value=2.3e-23 Score=203.02 Aligned_cols=153 Identities=19% Similarity=0.207 Sum_probs=93.2
Q ss_pred CCCCeeEEEEcccCcccccCcCCCCCCCCCccCCChHHHHH-HHHHHHhhcCCceEeeecccChH-hHHHHHh-hCCc-e
Q 012486 100 KFKDKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKK-LIREEMSSYNASILCLQEVDHFD-DLDDLLQ-MDGF-R 175 (462)
Q Consensus 100 ~~~~~~rV~SyNIl~~~~~~~~~~~y~~~~~~~l~w~~R~~-~I~~~I~~~~pDIIcLQEvd~~~-~l~~~L~-~~gY-~ 175 (462)
.....||||||||++.. .+.. .|++.|..++||||||||+.... .+...|. ..|| .
T Consensus 24 ~~~~~l~v~t~Ni~~~~--------------------~~~~~~i~~~i~~~~~DIi~LQE~~~~~~~~~~~l~~~~gy~~ 83 (285)
T 2o3h_A 24 GKPATLKIASWNVDGLR--------------------AWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSH 83 (285)
T ss_dssp SCBCCEEEEEEECSSHH--------------------HHHHTTHHHHHHHHCCSEEEEECCCCCTTSCCGGGGGCGGGCE
T ss_pred CCccceEEEEEecccCh--------------------hhhhhhHHHHHHhcCCCEEEEEEeecchhhccHHHHhccCCcE
Confidence 34567999999998532 1112 28999999999999999997532 2322232 4588 4
Q ss_pred EEEec-CCCCCCceeEEEEccCCceeeeeeeeeecccCCCCceeEEEEEEechhhhhhhhhcccccccCCCEEEEEeeCC
Q 012486 176 GVYKA-RTGDANDGCAIFWKEKLFTLLHQENIEFQNFGLRHNVAQLCVLKMNQSLLESAEESSLSMVSQSQSLVVGNIHV 254 (462)
Q Consensus 176 ~~~~~-~~~~~~~G~aI~~r~srf~l~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~g~~l~V~ntHL 254 (462)
.++.. ....+..|+|||+|...+.+... +.... .+..++++.+. .+.+.|+|+|+
T Consensus 84 ~~~~~~~~~~g~~Gvailsr~~~~~~~~~--~~~~~---~~~~~r~l~~~-------------------~~~~~v~~~h~ 139 (285)
T 2o3h_A 84 QYWSAPSDKEGYSGVGLLSRQCPLKVSYG--IGDEE---HDQEGRVIVAE-------------------FDSFVLVTAYV 139 (285)
T ss_dssp EEEECBC--CCSCCEEEEESSCCSEEEES--CSCGG---GSSBCCEEEEE-------------------CSSCEEEEEEC
T ss_pred EEEecccCCcccceEEEEEccChHHeeec--cCCcc---cCCCCcEEEEE-------------------eCCEEEEEEEc
Confidence 44443 22233469999977654443321 11111 11122232222 24699999999
Q ss_pred CCCCCC---chhHHHHHHHHHHHHHHHhhhcCCCCEEEcccCCCCCCc
Q 012486 255 LFNPNR---GDIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSPNS 299 (462)
Q Consensus 255 ~~~p~~---~~~R~~Q~~~Ll~~l~~~~~~~~~~pvIl~GDFNs~P~s 299 (462)
...... ...|..|+..|.+.++.+.. ..|+|||||||+.+..
T Consensus 140 p~~~~~~~~~~~r~~~~~~l~~~l~~~~~---~~p~Il~GDFN~~~~~ 184 (285)
T 2o3h_A 140 PNAGRGLVRLEYRQRWDEAFRKFLKGLAS---RKPLVLCGDLNVAHEE 184 (285)
T ss_dssp CCCCGGGTTHHHHHHHHHHHHHHHHHHHT---TSCEEEEEECSCCCSG
T ss_pred CCCCCcchhHHHHHHHHHHHHHHHHhhcc---CCCEEEEEECCCCCch
Confidence 642211 12366777888888776643 4799999999998764
No 18
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=99.90 E-value=8.1e-24 Score=199.60 Aligned_cols=146 Identities=22% Similarity=0.325 Sum_probs=91.2
Q ss_pred CCeeEEEEcccCcccccCcCCCCCCCCCccCCChHHHHHHHHHHHhhcCCceEeeecccChH-hHHHHHhhCCceEEEec
Q 012486 102 KDKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDHFD-DLDDLLQMDGFRGVYKA 180 (462)
Q Consensus 102 ~~~~rV~SyNIl~~~~~~~~~~~y~~~~~~~l~w~~R~~~I~~~I~~~~pDIIcLQEvd~~~-~l~~~L~~~gY~~~~~~ 180 (462)
...||||||||.+.. ...|+..|.+.|+..+||||||||+.... .+. .+...||...|..
T Consensus 5 ~~~lri~t~Nv~g~~------------------~~~~~~~~~~~i~~~~~DIv~LQE~~~~~~~~~-~l~~~~y~~~~~~ 65 (238)
T 1vyb_A 5 NSHITILTLNINGLN------------------SAIKRHRLASWIKSQDPSVCCIQETHLTCRDTH-RLKIKGWRKIYQA 65 (238)
T ss_dssp CCCEEEEEEECSCCC------------------SHHHHHHHHHHHHHHCCSEEEEECCCCCTTSGG-GCCCTTCCEEEEE
T ss_pred CCcceEEEEecccCC------------------chhhHHHHHHHHHHcCCCEEEEecccCCCCCch-hHhhCCCCeEEEc
Confidence 467999999997431 12466789999999999999999996422 221 2334578776544
Q ss_pred CCCCCCceeEEEEccC-CceeeeeeeeeecccCCCCceeEEEEEEechhhhhhhhhcccccccCCCEEEEEeeCCCCCCC
Q 012486 181 RTGDANDGCAIFWKEK-LFTLLHQENIEFQNFGLRHNVAQLCVLKMNQSLLESAEESSLSMVSQSQSLVVGNIHVLFNPN 259 (462)
Q Consensus 181 ~~~~~~~G~aI~~r~s-rf~l~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~g~~l~V~ntHL~~~p~ 259 (462)
....+..|+||++|.. .+.+.. ..... . ++++.+++. ..++.+.|+|+|+...
T Consensus 66 ~~~~~~~Gvail~r~~~~~~~~~---~~~~~----~--~r~i~~~~~---------------~~~~~~~v~~~y~p~~-- 119 (238)
T 1vyb_A 66 NGKQKKAGVAILVSDKTDFKPTK---IKRDK----E--GHYIMVKGS---------------IQQEELTILNIYAPNT-- 119 (238)
T ss_dssp CCSSSSCCEEEEECTTCCCEEEE---EEECT----T--SSEEEEEEE---------------ETTEEEEEEEEECCSS--
T ss_pred cCCCCCceEEEEEeCCCCccccc---eeEcC----C--CcEEEEEEE---------------eCCCcEEEEEEecCCC--
Confidence 3333456999998875 454432 11111 1 112222221 2467899999999642
Q ss_pred CchhHHHHHHHHHHHHHHHhhhcCCCCEEEcccCCCCCCc
Q 012486 260 RGDIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSPNS 299 (462)
Q Consensus 260 ~~~~R~~Q~~~Ll~~l~~~~~~~~~~pvIl~GDFNs~P~s 299 (462)
...| +...+++.+.+. .+.|+|||||||+.|.+
T Consensus 120 -~~~~--~~~~l~~~l~~~----~~~~~Il~GDFN~~~~~ 152 (238)
T 1vyb_A 120 -GAPR--FIKQVLSDLQRD----LDSHTLIMGDFNTPLST 152 (238)
T ss_dssp -SHHH--HHHHHHHHTTTT----CCTTEEEEEECSSCSSG
T ss_pred -CcHH--HHHHHHHHHHhc----cCCCEEEEccCCCCCCc
Confidence 2222 344444444332 35799999999998864
No 19
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=99.90 E-value=6.4e-23 Score=198.05 Aligned_cols=149 Identities=20% Similarity=0.321 Sum_probs=95.7
Q ss_pred eeEEEEcccCcccccCcCCCCCCCCCccCCChHHHHH-HHHHHHhhcCCceEeeecccCh-HhHHHHHh-hCCceEEEec
Q 012486 104 KFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKK-LIREEMSSYNASILCLQEVDHF-DDLDDLLQ-MDGFRGVYKA 180 (462)
Q Consensus 104 ~~rV~SyNIl~~~~~~~~~~~y~~~~~~~l~w~~R~~-~I~~~I~~~~pDIIcLQEvd~~-~~l~~~L~-~~gY~~~~~~ 180 (462)
.|||+||||.+.. .+.+ .|++.|+..+||||||||+... ..+...+. ..||..++..
T Consensus 3 ~l~i~s~Nv~g~~--------------------~~~~~~l~~~i~~~~~DIv~LQEt~~~~~~~~~~~~~~~gy~~~~~~ 62 (265)
T 3g91_A 3 VLKIISWNVNGLR--------------------AVHRKGFLKWFMEEKPDILCLQEIKAAPEQLPRKLRHVEGYRSFFTP 62 (265)
T ss_dssp EEEEEEEECSCHH--------------------HHHHHTHHHHHHHHCCSEEEEECCCSCGGGSCHHHHCCTTCEEEEEC
T ss_pred ccEEEEEEcCCch--------------------hhhhhhHHHHHHhcCCCEEEEEeccccccccChhhhcccCCcEEEcc
Confidence 6999999998542 1122 4889999999999999999642 23333333 5799987765
Q ss_pred CCCCCCceeEEEEccCCceeeeeeeeeecccCCCCceeEEEEEEechhhhhhhhhcccccccCCCEEEEEeeCCCCCCCC
Q 012486 181 RTGDANDGCAIFWKEKLFTLLHQENIEFQNFGLRHNVAQLCVLKMNQSLLESAEESSLSMVSQSQSLVVGNIHVLFNPNR 260 (462)
Q Consensus 181 ~~~~~~~G~aI~~r~srf~l~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~g~~l~V~ntHL~~~p~~ 260 (462)
....+..|+|||+|...+.+........ .+..+++..++ ...+.|+|+|+.... .
T Consensus 63 ~~~~~~~Gvail~k~~~~~~~~~~~~~~-----~d~~gr~i~~~-------------------~~~~~i~~vy~p~~~-~ 117 (265)
T 3g91_A 63 AERKGYSGVAMYTKVPPSSLREGFGVER-----FDTEGRIQIAD-------------------FDDFLLYNIYFPNGA-M 117 (265)
T ss_dssp BSSTTSCCEEEEESSCCSEEECCCSCHH-----HHSBSCEEEEE-------------------CSSCEEEEEECCCCT-T
T ss_pred CCCCCcCEEEEEEecChHHhccCCCCcc-----cCCcCCEEEEE-------------------eCCEEEEEEEecCCC-C
Confidence 5555668999997755433322111000 11123333332 246999999996432 2
Q ss_pred ch----hHHHHHHHHHHHHHHHhhhcCCCCEEEcccCCCCCCc
Q 012486 261 GD----IKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSPNS 299 (462)
Q Consensus 261 ~~----~R~~Q~~~Ll~~l~~~~~~~~~~pvIl~GDFNs~P~s 299 (462)
.. .|..+...|.+.+..+.. .+.|+|||||||..|..
T Consensus 118 ~~~~~~~r~~~~~~l~~~~~~~~~--~~~~~ii~GDfN~~~~~ 158 (265)
T 3g91_A 118 SEERLKYKLEFYDAFLEDVNRERD--SGRNVIICGDFNTAHRE 158 (265)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH--TTCCEEEEEECCCCCSG
T ss_pred CchhHHHHHHHHHHHHHHHHHHHc--CCCCEEEECccccCCch
Confidence 22 255566667777766643 25899999999999875
No 20
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=99.90 E-value=1.8e-23 Score=200.19 Aligned_cols=146 Identities=16% Similarity=0.170 Sum_probs=89.6
Q ss_pred eEEEEcccCcccccCcCCCCCCCCCccCCChHHHHHHHHHHHhhcCCceEeeecccChH-hH-HHHHhhCCceEEEecCC
Q 012486 105 FVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDHFD-DL-DDLLQMDGFRGVYKART 182 (462)
Q Consensus 105 ~rV~SyNIl~~~~~~~~~~~y~~~~~~~l~w~~R~~~I~~~I~~~~pDIIcLQEvd~~~-~l-~~~L~~~gY~~~~~~~~ 182 (462)
||||||||.+.. .|.+.|++.|+..+||||||||+.... .+ ...+...||..++..
T Consensus 2 lrv~t~Nv~g~~--------------------~~~~~i~~~i~~~~~Dii~lQE~~~~~~~~~~~~~~~~gy~~~~~~-- 59 (257)
T 2voa_A 2 LKIATFNVNSIR--------------------SRLHIVIPWLKENKPDILCMQETKVENRKFPEADFHRIGYHVVFSG-- 59 (257)
T ss_dssp EEEEEEECSCGG--------------------GTHHHHHHHHHHHCCSEEEEECCCCCGGGCCHHHHHTTTCEEEEEE--
T ss_pred eEEEEEecCChH--------------------HHHHHHHHHHhhcCCCEEEEEEeecchhhcCHHHhhhCCCcEEEcC--
Confidence 899999998431 124679999999999999999997422 23 234556789876643
Q ss_pred CCCCceeEEEEccCCceeeeeeeeeecccCCCCceeEEEEEEechhhhhhhhhcccccccCCCEEEEEeeCCCCCCCCch
Q 012486 183 GDANDGCAIFWKEKLFTLLHQENIEFQNFGLRHNVAQLCVLKMNQSLLESAEESSLSMVSQSQSLVVGNIHVLFNPNRGD 262 (462)
Q Consensus 183 ~~~~~G~aI~~r~srf~l~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~g~~l~V~ntHL~~~p~~~~ 262 (462)
..+..|+||++| +++..... .+..... + .++++..++ ..+.|+|+|+......+.
T Consensus 60 ~~~~~G~ailsr---~~~~~~~~-~~~~~~~-~-~~r~l~~~~-------------------~~~~v~~~h~p~~~~~~~ 114 (257)
T 2voa_A 60 SKGRNGVAIASL---EEPEDVSF-GLDSEPK-D-EDRLIRAKI-------------------AGIDVINTYVPQGFKIDS 114 (257)
T ss_dssp ETTEEEEEEEES---SCCEEEEE-SCSSSSC-C-GGGEEEEEE-------------------TTEEEEEEECCCCSCTTS
T ss_pred CCCccEEEEEEc---cChHHhee-cCCCCcc-c-cCcEEEEEE-------------------CCEEEEEEEeCCCCCCCc
Confidence 233579999965 44433221 1221100 1 122222221 259999999964321122
Q ss_pred h----HHHHHHHHHHHHHHHhhhcCCCCEEEcccCCCCCCc
Q 012486 263 I----KLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSPNS 299 (462)
Q Consensus 263 ~----R~~Q~~~Ll~~l~~~~~~~~~~pvIl~GDFNs~P~s 299 (462)
. |..++..|.+.+.++.. .+.|+|||||||+.|.+
T Consensus 115 ~~~~~r~~~~~~l~~~~~~~~~--~~~p~Il~GDFN~~~~~ 153 (257)
T 2voa_A 115 EKYQYKLQWLERLYHYLQKTVD--FRSFAVWCGDMNVAPEP 153 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC--TTSCEEEEEECSCCCSG
T ss_pred HHHHHHHHHHHHHHHHHHHHhc--CCCCEEEEeeCCCCCch
Confidence 2 33455666666655421 36799999999999875
No 21
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=99.89 E-value=6.6e-23 Score=203.98 Aligned_cols=153 Identities=20% Similarity=0.246 Sum_probs=87.9
Q ss_pred CCCeeEEEEcccCcccccCcCCCCCCCCCccCCChHHHHHHHHHHHhhcCCceEeeecccCh-HhHHHHH-hhCCc-eEE
Q 012486 101 FKDKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDHF-DDLDDLL-QMDGF-RGV 177 (462)
Q Consensus 101 ~~~~~rV~SyNIl~~~~~~~~~~~y~~~~~~~l~w~~R~~~I~~~I~~~~pDIIcLQEvd~~-~~l~~~L-~~~gY-~~~ 177 (462)
....||||||||++... + . ...|++.|..++||||||||+... ..+...| ...|| ..+
T Consensus 58 ~~~~lrv~t~Nv~g~~~-----------------~-~-~~~i~~~i~~~~~DIi~LQE~~~~~~~~~~~l~~~~gy~~~~ 118 (318)
T 1hd7_A 58 KPATLKICSWNVDGLRA-----------------W-I-KKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQY 118 (318)
T ss_dssp CBCCEEEEEEECSSHHH-----------------H-H-HTTHHHHHHHHCCSEEEEECCCCCC-----------CCCEEE
T ss_pred CCCceEEEEEecCcchh-----------------h-h-hhhHHHHHHhhCCCEEEEEEccCchhhccHHHHhcCCCceEE
Confidence 45679999999985321 0 0 113889999999999999999752 2332222 34688 444
Q ss_pred Eec-CCCCCCceeEEEEccCCceeeeeeeeeecccCCCCceeEEEEEEechhhhhhhhhcccccccCCCEEEEEeeCCCC
Q 012486 178 YKA-RTGDANDGCAIFWKEKLFTLLHQENIEFQNFGLRHNVAQLCVLKMNQSLLESAEESSLSMVSQSQSLVVGNIHVLF 256 (462)
Q Consensus 178 ~~~-~~~~~~~G~aI~~r~srf~l~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~g~~l~V~ntHL~~ 256 (462)
+.. ....+..|+|||+|...+.+... +..... +..++++.+. .+.|.|+|+|+..
T Consensus 119 ~~~~~~~~g~~Gvailsr~~~~~~~~~--~~~~~~---~~~~r~l~~~-------------------~~~~~v~~vh~p~ 174 (318)
T 1hd7_A 119 WSAPSDKEGYSGVGLLSRQCPLKVSYG--IGDEEH---DQEGRVIVAE-------------------FDSFVLVTAYVPN 174 (318)
T ss_dssp EECC-----CCCEEEEESSCCSEEEES--CSCGGG---SSSSCEEEEE-------------------CSSCEEEEEECCC
T ss_pred EecCCCCCccceEEEEEcCCceeEEec--CCCccc---CCCCcEEEEE-------------------cCCEEEEEEEcCC
Confidence 443 22233469999976554433211 111110 1112232222 2369999999964
Q ss_pred CCCC---chhHHHHHHHHHHHHHHHhhhcCCCCEEEcccCCCCCCc
Q 012486 257 NPNR---GDIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSPNS 299 (462)
Q Consensus 257 ~p~~---~~~R~~Q~~~Ll~~l~~~~~~~~~~pvIl~GDFNs~P~s 299 (462)
.... ...|..|+..|.+.+..+.. ..|+|||||||+.+.+
T Consensus 175 ~~~~~~~~~~r~~~~~~l~~~l~~~~~---~~pvIl~GDFN~~~~~ 217 (318)
T 1hd7_A 175 AGRGLVRLEYRQRWDEAFRKFLKGLAS---RKPLVLCGDLNVAHEE 217 (318)
T ss_dssp CCGGGTTHHHHHHHHHHHHHHHHHHHH---HSCEEEEEECSCCCSG
T ss_pred CCCccccHHHHHHHHHHHHHHHHhccc---CCCEEEEeeCCCCChh
Confidence 2211 12366778888888876643 3799999999998864
No 22
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=99.89 E-value=1.1e-22 Score=212.18 Aligned_cols=80 Identities=20% Similarity=0.330 Sum_probs=54.6
Q ss_pred CCCeeEEEEcccCcccccCcCCCCCCCCCccCCChHHHH-HHHHHHHhhcCCceEeeecccChH-hHH--HHHh-hCCce
Q 012486 101 FKDKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRK-KLIREEMSSYNASILCLQEVDHFD-DLD--DLLQ-MDGFR 175 (462)
Q Consensus 101 ~~~~~rV~SyNIl~~~~~~~~~~~y~~~~~~~l~w~~R~-~~I~~~I~~~~pDIIcLQEvd~~~-~l~--~~L~-~~gY~ 175 (462)
....||||||||.+.. .|..|. ..|.+.|..++||||||||+.... .+. ..|. ..||.
T Consensus 146 ~~~~LKI~TwNVnGl~-----------------~~~kr~~~~i~~~I~~~~pDIVcLQEtk~~~~~~~~~~~la~~~GY~ 208 (467)
T 2j63_A 146 PSRMYKFITWNVAGLR-----------------GLLKKNASALRAFMEAEKPDVLCLQETKLNVDEADANATLGVVDGYS 208 (467)
T ss_dssp TTTEEEEEEEECSCHH-----------------HHHHHCTTHHHHHHHHHCCSEEEEECCCCCTTCHHHHHTSSCCTTEE
T ss_pred CCCCeEEEEEEcCCCc-----------------ccccccHHHHHHHHHHcCCCEEEEEecccchhccchHHHHhhcCCce
Confidence 3467999999998532 122221 579999999999999999997422 232 2244 46898
Q ss_pred EEEecC-CCCCCceeEEEEccCC
Q 012486 176 GVYKAR-TGDANDGCAIFWKEKL 197 (462)
Q Consensus 176 ~~~~~~-~~~~~~G~aI~~r~sr 197 (462)
.+|... ...+..|+|||+|...
T Consensus 209 ~~~~~~~~~~g~~GVAIlsR~pi 231 (467)
T 2j63_A 209 FVDHPCAFKRGYSGTRTYMKNST 231 (467)
T ss_dssp EEEECCSSSTTSCCEEEEEECCC
T ss_pred EEEecccCCCCcceEEEEEeCCc
Confidence 776542 2335689999977654
No 23
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=99.88 E-value=2.5e-22 Score=193.88 Aligned_cols=156 Identities=14% Similarity=0.221 Sum_probs=98.4
Q ss_pred eEEEEcccCcccccCcCCCCCCCCCccCCChHHHHHHHHHHHhhc--CCceEeeecccC-----hHhHHHHHhh---CCc
Q 012486 105 FVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSY--NASILCLQEVDH-----FDDLDDLLQM---DGF 174 (462)
Q Consensus 105 ~rV~SyNIl~~~~~~~~~~~y~~~~~~~l~w~~R~~~I~~~I~~~--~pDIIcLQEvd~-----~~~l~~~L~~---~gY 174 (462)
||||||||+.... .. .|...+++.|... +|||||||||+. ..+|...|.. .+|
T Consensus 1 lrv~s~NI~~~g~---------------~~--~~~~~~~~~i~~~~~~~DIv~LQEv~~~~~~~~~~l~~~L~~~~~~~y 63 (260)
T 2a40_B 1 LKIAAFNIRTFGE---------------TK--MSNATLASYIVRIVRRYDIVLIQEVRDSHLVAVGKLLDYLNQDDPNTY 63 (260)
T ss_dssp CEEEEEEEEEESH---------------HH--HHSHHHHHHHHHHHTTCSEEEEEEECCTTSHHHHHHHHHHTSSSTTSC
T ss_pred CEEEEEehhhhCC---------------Cc--cchHHHHHHHHHHhccCCEEEEEEEEcCchhHHHHHHHHHHhccCCCc
Confidence 6999999996310 01 1334444444442 899999999974 3445555642 347
Q ss_pred eEEEecCCC--CCCceeEEEEccCCceeeeeeeeeecccCC------CCceeEEEEEEechhhhhhhhhcccccccCCCE
Q 012486 175 RGVYKARTG--DANDGCAIFWKEKLFTLLHQENIEFQNFGL------RHNVAQLCVLKMNQSLLESAEESSLSMVSQSQS 246 (462)
Q Consensus 175 ~~~~~~~~~--~~~~G~aI~~r~srf~l~~~~~i~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~g~~ 246 (462)
..+...+.+ ...+++|++||++++.+++...+ +.... -.....++.++... ..|+.
T Consensus 64 ~~v~~~~~~~~~~~~~~~~ly~~~~v~~~~~~~~--~~~~~~~~~~~~~R~p~~~~~~~~~--------------~~g~~ 127 (260)
T 2a40_B 64 HYVVSEPLGRNSYKERYLFLFRPNKVSVLDTYQY--DDGCESCGNDSFSREPAVVKFSSHS--------------TKVKE 127 (260)
T ss_dssp EEEECCCBCSSSCCBEEEEEECTTTCEEEEEEEC--CTTSTTTHHHHCSSCCEEEEEECTT--------------SSSSE
T ss_pred EEEEcccCCCCCCcEEEEEEEcCceeEecCceec--cCCCcCCCCCceeeCCEEEEEEeCC--------------CCCce
Confidence 766554322 24678999999999998876433 22100 01123444444210 12789
Q ss_pred EEEEeeCCCCCCCCchhHHHHHHHHHHHHHHHhhhcCCCCEEEcccCCCCCC
Q 012486 247 LVVGNIHVLFNPNRGDIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSPN 298 (462)
Q Consensus 247 l~V~ntHL~~~p~~~~~R~~Q~~~Ll~~l~~~~~~~~~~pvIl~GDFNs~P~ 298 (462)
|.|+|+||.+. . +..|++.|.+.+..+.+..+..|+|||||||+.|.
T Consensus 128 ~~vi~~Hl~~~--~---~~~q~~~l~~~~~~~~~~~~~~~vil~GDfN~~~~ 174 (260)
T 2a40_B 128 FAIVALHSAPS--D---AVAEINSLYDVYLDVQQKWHLNDVMLMGDFNADCS 174 (260)
T ss_dssp EEEEECCCCGG--G---HHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCSTT
T ss_pred EEEEEecCCCC--C---cHHHHHHHHHHHHHHHHhCCCCCEEEEecCCCCCc
Confidence 99999999842 2 23467777777666554445789999999999988
No 24
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=99.88 E-value=7.5e-22 Score=188.48 Aligned_cols=144 Identities=15% Similarity=0.128 Sum_probs=86.4
Q ss_pred CCeeEEEEcccCcccccCcCCCCCCCCCccCCChHHHHHHHHHHHhhcCCceEeeecccChHhHHHHHhhCCceEEEecC
Q 012486 102 KDKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDHFDDLDDLLQMDGFRGVYKAR 181 (462)
Q Consensus 102 ~~~~rV~SyNIl~~~~~~~~~~~y~~~~~~~l~w~~R~~~I~~~I~~~~pDIIcLQEvd~~~~l~~~L~~~gY~~~~~~~ 181 (462)
...||||||||.... .+...+++.|...+||||||||+.....-... ...||..++...
T Consensus 17 ~~~lri~s~Nv~~~~--------------------~~~~~l~~~i~~~~~DIv~lQE~~~~~~~~~~-~~~gy~~~~~~~ 75 (245)
T 1wdu_A 17 GPPYRVLQANLQRKK--------------------LATAELAIEAATRKAAIALIQEPYVGGAKSMK-GFRGVRVFQSTA 75 (245)
T ss_dssp -CCEEEEEEECTTCH--------------------HHHHHHHHHHHHHTCSEEEEESCCC------C-CCSSCEEEECCC
T ss_pred CcceeeeeeeccccH--------------------HHHHHHHHHHhhcCCCEEEEEcccccCCcccc-CCCcceEecccc
Confidence 357999999998532 24667999999999999999999752211111 135786554332
Q ss_pred CCCCCceeEEEEccCCceeeeeeeeeecccCCCCceeEEEEEEechhhhhhhhhcccccccCCCEEEEEeeCCCCCCCCc
Q 012486 182 TGDANDGCAIFWKEKLFTLLHQENIEFQNFGLRHNVAQLCVLKMNQSLLESAEESSLSMVSQSQSLVVGNIHVLFNPNRG 261 (462)
Q Consensus 182 ~~~~~~G~aI~~r~srf~l~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~g~~l~V~ntHL~~~p~~~ 261 (462)
..++..|+||++++.++++.... .. ...-...+.++ ..++.+.|+|+|+.... ..
T Consensus 76 ~~~~~~GvaIl~~~~~~~~~~~~-----~~--~~~~~~~~~i~-----------------~~~~~~~v~~vy~p~~~-~~ 130 (245)
T 1wdu_A 76 QGDGTVKAAIAVFDHDLDVIQYP-----QL--TTNNIVVVGIR-----------------TRAWEITLVSYYFEPDK-PI 130 (245)
T ss_dssp CTTCCCCEEEEECCSSCEEEECT-----TT--CCSSEEEEEEE-----------------CSSCEEEEEEEECCTTS-CS
T ss_pred ccCCCCCeEEEEECCCcceEEec-----cc--ccCCEEEEEEE-----------------cCCCcEEEEEEEeCCCC-CH
Confidence 22345799999988788774321 11 11112222232 23678999999997422 11
Q ss_pred hhHHHHHHHHHHHHHHHhhhcCCCCEEEcccCCCCCC
Q 012486 262 DIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSPN 298 (462)
Q Consensus 262 ~~R~~Q~~~Ll~~l~~~~~~~~~~pvIl~GDFNs~P~ 298 (462)
.....|+..+ ++.+ ...|+|||||||+.+.
T Consensus 131 ~~~~~~l~~~---~~~~----~~~~~Ii~GDfN~~~~ 160 (245)
T 1wdu_A 131 ESYLEQIKRV---ERKM----GPKRLIFGGDANAKST 160 (245)
T ss_dssp HHHHHHHHHH---HHTT----CSSSEEEEEECCCCCG
T ss_pred HHHHHHHHHH---HHHh----CCCcEEEEeccccCcc
Confidence 1122233222 2222 3579999999998874
No 25
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=99.79 E-value=1.2e-18 Score=166.72 Aligned_cols=128 Identities=14% Similarity=0.210 Sum_probs=79.5
Q ss_pred CeeEEEEcccCcccccCcCCCCCCCCCccCCChHHHHHHHHHHHhhcCCceEeeecccChHhHHHHHhhCCceEEEecCC
Q 012486 103 DKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASILCLQEVDHFDDLDDLLQMDGFRGVYKART 182 (462)
Q Consensus 103 ~~~rV~SyNIl~~~~~~~~~~~y~~~~~~~l~w~~R~~~I~~~I~~~~pDIIcLQEvd~~~~l~~~L~~~gY~~~~~~~~ 182 (462)
..|||+||||.... .|...++++|.+.+||||||||+.. ..||. +..
T Consensus 6 ~~mki~s~Nvn~~r--------------------~~~~~l~~~l~~~~~DIl~LQEt~~---------~~gy~--~~~-- 52 (240)
T 2ei9_A 6 PRLRIGQINLGGAE--------------------DATRELPSIARDLGLDIVLVQEQYS---------MVGFL--AQC-- 52 (240)
T ss_dssp CEEEEEEEECTTCH--------------------HHHHTHHHHHHHHTCSEEEEESCCT---------TSSSE--ECC--
T ss_pred ccceEEEEecCccH--------------------HHHHHHHHHHHHcCCCEEEeecceE---------cCCce--Eec--
Confidence 35999999998642 3456699999999999999999963 13676 321
Q ss_pred CCCCceeEEEEccCCceeeeeeeeeecccCCCCceeEEEEEEechhhhhhhhhcccccccCCCEEEEEeeCCCCCCCCch
Q 012486 183 GDANDGCAIFWKEKLFTLLHQENIEFQNFGLRHNVAQLCVLKMNQSLLESAEESSLSMVSQSQSLVVGNIHVLFNPNRGD 262 (462)
Q Consensus 183 ~~~~~G~aI~~r~srf~l~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~g~~l~V~ntHL~~~p~~~~ 262 (462)
.+..|+||+.++..+++..... +. +..++.+.++ ...+.|+|+|+... ...+
T Consensus 53 -~~~~gvail~~~~~~~~~~~~~--~~-----~~~~~~i~i~-------------------~~~i~i~svY~P~~-~~~~ 104 (240)
T 2ei9_A 53 -GAHPKAGVYIRNRVLPCAVLHH--LS-----STHITVVHIG-------------------GWDLYMVSAYFQYS-DPID 104 (240)
T ss_dssp -SSSCSEEEEESSTTSCEEECGG--GC-----CSSEEEEEET-------------------TTTEEEEEEECCTT-SCSH
T ss_pred -cCCCCEEEEEecCCcceeeecc--cC-----CCCEEEEEEe-------------------eccEEEEEEEcCCC-Cchh
Confidence 2468999998865555432111 11 1122222221 24699999999632 1122
Q ss_pred hHHHHHHHHHHHHHHHhhhcCCCCEEEcccCCCCCC
Q 012486 263 IKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSPN 298 (462)
Q Consensus 263 ~R~~Q~~~Ll~~l~~~~~~~~~~pvIl~GDFNs~P~ 298 (462)
.++.++..|+.. ....|+|||||||..+.
T Consensus 105 ~~~~~l~~l~~~-------~~~~~~Ii~GDfN~~~~ 133 (240)
T 2ei9_A 105 PYLHRLGNILDR-------LRGARVVICADTNAHSP 133 (240)
T ss_dssp HHHHHHHHHHHH-------TTTSCEEEEEECCCCCG
T ss_pred HHHHHHHHHHHh-------cCCCcEEEEEecccccc
Confidence 333333333221 12469999999998874
No 26
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=99.77 E-value=2.8e-18 Score=164.13 Aligned_cols=161 Identities=20% Similarity=0.226 Sum_probs=93.1
Q ss_pred CeeEEEEcccCcccccCcCCCCCCCCCccCCChHHHHHHHHHHHhh-cCCceEeeecccChHh--H-HHHH---------
Q 012486 103 DKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSS-YNASILCLQEVDHFDD--L-DDLL--------- 169 (462)
Q Consensus 103 ~~~rV~SyNIl~~~~~~~~~~~y~~~~~~~l~w~~R~~~I~~~I~~-~~pDIIcLQEvd~~~~--l-~~~L--------- 169 (462)
..+|||||||+..... ..-+|. ..+++.|.. .+||||+|||++.+.. + ...+
T Consensus 3 ~~~kv~TwNi~g~~~~------------~~~k~~---~~i~~~i~~~~~~DIlaLQEa~~~p~~~~~~~r~~~~~g~~v~ 67 (261)
T 1sr4_B 3 SDFKVATWNLQGSSAV------------NESKWN---INVRQLLSGEQGADILMVQEAGSLPSSAVRTSRVIQHGGTPIE 67 (261)
T ss_dssp GGSCEEEEECCCCSSS------------SHHHHH---HHHHHHHCSTTCCSEEEEESCCSCCTTCEECSCCCCCSSSCCE
T ss_pred cccEEEEEEcCCCCCC------------Chhhhh---hHHHHHHcCCCCCCEEEEecCCCCCCccccchhhhcccCCchh
Confidence 3689999999963211 111332 368889988 7899999999986421 1 0111
Q ss_pred ---hhC------CceEEEecC--CCCCCceeEEEEccCCceeeeeeeeeecccCCCCceeEEEEEEechhhhhhhhhccc
Q 012486 170 ---QMD------GFRGVYKAR--TGDANDGCAIFWKEKLFTLLHQENIEFQNFGLRHNVAQLCVLKMNQSLLESAEESSL 238 (462)
Q Consensus 170 ---~~~------gY~~~~~~~--~~~~~~G~aI~~r~srf~l~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l 238 (462)
-+. ++.++|..+ .+.+..|+||+ +|+++.+...+..... .....+.+.+ ++
T Consensus 68 e~~w~lg~~~r~~~~yiy~~~~d~~~g~~g~AIl---SR~~~~~v~~l~~~~~-~~~~R~~l~i-~i------------- 129 (261)
T 1sr4_B 68 EYTWNLGTRSRPNMVYIYYSRLDVGANRVNLAIV---SRRQADEAFIVHSDSS-VLQSRPAVGI-RI------------- 129 (261)
T ss_dssp EEEEESSCSSSCCEEEEEEECCCTTTSCSCEEEE---ESSCCSEEEEECCCCC-SSCCCCEEEE-EE-------------
T ss_pred hhhhhcccccCCCceEEEEEeecCCCCccceEEE---EccchhceEEcCCCCC-CCcCcceEEE-EE-------------
Confidence 011 344555433 34467899999 6666644333332220 0112222222 22
Q ss_pred ccccCCCEEEEEeeCCCCCCCCchhHHHHHHHHHHHHHHHh--hhcCCCCEEEcccCCCCCCchhHHHH
Q 012486 239 SMVSQSQSLVVGNIHVLFNPNRGDIKLGQIRLFLEKAYKLS--QEWGGIPVLLAGDLNSSPNSALYQFL 305 (462)
Q Consensus 239 ~~~~~g~~l~V~ntHL~~~p~~~~~R~~Q~~~Ll~~l~~~~--~~~~~~pvIl~GDFNs~P~s~~y~~L 305 (462)
.+ +.|++||+..+. +..+..|++.|.+.+.... ......|+||+||||..|.+ ....|
T Consensus 130 ----~g--~~f~s~Hl~~~~--~~ea~~~v~~I~~~~~~~~~~~~~~~~~~ii~GDFN~~p~~-~~~~L 189 (261)
T 1sr4_B 130 ----GT--DVFFTVHALATG--GSDAVSLIRNIFTTFNSSSSPPERRVYSWMVVGDFNRAPAN-LEVAL 189 (261)
T ss_dssp ----TT--EEEEEEECCTTT--TTTHHHHHHHHHHHHHC---CGGGGGCEEEEEEECSSCHHH-HHHHH
T ss_pred ----CC--eEEEEeCCCCCC--CchHHHHHHHHHHHHHhcccCCcccCCcEEEEeeCCCChhH-HHHHh
Confidence 24 999999998643 3456667777766664430 00012699999999999876 33344
No 27
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=99.77 E-value=8.8e-19 Score=171.63 Aligned_cols=169 Identities=12% Similarity=0.019 Sum_probs=100.4
Q ss_pred CeeEEEEcccCcccccCcCCCCCCCCCccCCChHHHHHHHHHHHhhcCCce--EeeecccC-----------hHhHHHHH
Q 012486 103 DKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASI--LCLQEVDH-----------FDDLDDLL 169 (462)
Q Consensus 103 ~~~rV~SyNIl~~~~~~~~~~~y~~~~~~~l~w~~R~~~I~~~I~~~~pDI--IcLQEvd~-----------~~~l~~~L 169 (462)
-.|+||||||..... +.....| +..|...+||| |||||++. .+.+.+.|
T Consensus 7 ~~i~V~T~Nv~~~~~-----------~~~l~~w-------l~~~~~~~pDI~viglQEv~~~~~~~~~~~~w~~~l~~~L 68 (282)
T 2imq_X 7 LSVHTVSWNSGHERA-----------PTNLEEL-------LGLNSGETPDVIAVAVQGFGFQTDKPQQGPACVKNFQSLL 68 (282)
T ss_dssp EEEEEEEEEEETCCC-----------CSCCHHH-------HTCTTSCCCSEEEEEEEESCTTTCTTCCHHHHHHHHHHHH
T ss_pred cEEEEEEEeCCCCcC-----------chhHHHH-------hcccccCCCCEEEEEeeeeccccccchhhHHHHHHHHHhc
Confidence 469999999986421 1111122 22344689996 59999963 23456667
Q ss_pred hhCCceEEEecCCCCCCceeEEEEccCCceeeeeeeeeecccCCCCceeEEEEEEechhhhhhhhhcccccccCCCEEEE
Q 012486 170 QMDGFRGVYKARTGDANDGCAIFWKEKLFTLLHQENIEFQNFGLRHNVAQLCVLKMNQSLLESAEESSLSMVSQSQSLVV 249 (462)
Q Consensus 170 ~~~gY~~~~~~~~~~~~~G~aI~~r~srf~l~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~g~~l~V 249 (462)
..++|..+.....+..+..++||+|++.++.++...+.-....+...-+..+.+. ..+..|++
T Consensus 69 ~~~~Y~~v~~~~~~~~G~~l~vf~k~~~~~~i~~~~~~~~~g~~g~kGav~~r~~-----------------~~~~~~~f 131 (282)
T 2imq_X 69 TSKGYTKLKNTITETMGLTVYCLEKHLDQNTLKNETIIVTVDDQKKSGGIVTSFT-----------------IYNKRFSF 131 (282)
T ss_dssp HHTTEEEEEEEECSSEEEEEEEEGGGCCTTTCCCEEEEEECSTTSCSEEEEEEEE-----------------ETTEEEEE
T ss_pred CCCceEEEEeccCceeEEEEEEEEccccCccceeeeeccccccccCCceEEEEEE-----------------ECCEEEEE
Confidence 7677876654222223466778878877766654432110111222223333333 24789999
Q ss_pred EeeCCCCCCCCchhHHHHHHHHHHHHHHHhhhcCCCCEEEcccCCCCCC---chhHHHHhcCC
Q 012486 250 GNIHVLFNPNRGDIKLGQIRLFLEKAYKLSQEWGGIPVLLAGDLNSSPN---SALYQFLASSE 309 (462)
Q Consensus 250 ~ntHL~~~p~~~~~R~~Q~~~Ll~~l~~~~~~~~~~pvIl~GDFNs~P~---s~~y~~L~~~~ 309 (462)
+|+||.++......|..|++.|++.+..+ ....|+|+|||||..++ +.+++++.++.
T Consensus 132 vn~HL~~~~~~~~~R~~~~~~I~~~~~~~---~~~~~vi~~GDfN~r~~~~~~~~~~~i~~~~ 191 (282)
T 2imq_X 132 TTSRMSDEDVTSTNTKYAYDTRLDYSKKD---DPSDFLFWIGDLNVRVETNATHAKSLVDQNN 191 (282)
T ss_dssp EEEECCTTCCCTTSSSSSCCGGGCTTSSS---SCCSEEEEEEECSCCBCSCHHHHHHHHHTTC
T ss_pred EEECCCCCCchHHHHHHHHHHHHHhhhcc---CccceEEEecccccccCCCHHHHHHHHhhcc
Confidence 99999975332344666666665544322 13568999999996655 56777776654
No 28
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=99.73 E-value=5.4e-18 Score=160.55 Aligned_cols=156 Identities=15% Similarity=0.143 Sum_probs=101.3
Q ss_pred CCeeEEEEcccCcccccCcCCCCCCCCCccCCChHHHHHHHHHHHhhcC-CceEeeecccCh--------H-------hH
Q 012486 102 KDKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYN-ASILCLQEVDHF--------D-------DL 165 (462)
Q Consensus 102 ~~~~rV~SyNIl~~~~~~~~~~~y~~~~~~~l~w~~R~~~I~~~I~~~~-pDIIcLQEvd~~--------~-------~l 165 (462)
...+|||||||.....+ ..-+|. .-|.+.|...+ +|||+|||++.. . +.
T Consensus 13 ~~~~kV~TwNiqgs~~~------------teskw~---~~v~~lI~~~~~~DIvaLQEag~~p~sa~~t~R~~~~~g~~v 77 (262)
T 2f1n_A 13 LTDFRVATWNLQGASAT------------TESKWN---INVRQLISGENAVDILAVQEAGSPPSTAVDTGRVIPSPGIPV 77 (262)
T ss_dssp GGGCCEEEEEEEECTTS------------CHHHHH---THHHHHHSSTTCCSEEEEEEECSCCTTCEECCCCCCCSSCCC
T ss_pred cceeEEEEEEcCCCCCC------------Cccccc---ccHHHHHccCCCCCEEEEeecCCcCcccccccccccCCCcCH
Confidence 45799999999975321 122342 23556888888 999999999843 1 11
Q ss_pred HHHHhhCC------ceEEEecCC--CCCCceeEEEEccCCceeeeeeeeeecccCCCCceeEEEEEEechhhhhhhhhcc
Q 012486 166 DDLLQMDG------FRGVYKART--GDANDGCAIFWKEKLFTLLHQENIEFQNFGLRHNVAQLCVLKMNQSLLESAEESS 237 (462)
Q Consensus 166 ~~~L~~~g------Y~~~~~~~~--~~~~~G~aI~~r~srf~l~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 237 (462)
.+.+...| +.++|..+. +.+..|+||+ ||++.. +.+.++..... ..+.+. .++
T Consensus 78 ~E~~w~lGt~srp~~~yiY~~~~D~~~~r~nlAIl---Sr~~ad--ev~vLp~~~~~-~Rp~lg-iri------------ 138 (262)
T 2f1n_A 78 RELIWNLSTNSRPQQVYIYFSAVDALGGRVNLALV---SNRRAD--EVFVLSPVRQG-GRPLLG-IRI------------ 138 (262)
T ss_dssp EEEEEECCSSSSSCEEEEEEECSCSSSCSSCEEEE---ESSCCS--EEEEECCSSTT-CCCEEE-EEE------------
T ss_pred HHHHHHhCCCCCCceEEEEEeeccCCCCceeeEEE---Eccccc--ceEECCCCCCC-CCceEE-EEE------------
Confidence 22233445 777665543 4568899999 888876 33434432211 233332 222
Q ss_pred cccccCCCEEEEEeeCCCCCCCCchhHHHHHHHHHHHHHHHhhhcCC-----CCEEEcccCCCCCCchhHHH
Q 012486 238 LSMVSQSQSLVVGNIHVLFNPNRGDIKLGQIRLFLEKAYKLSQEWGG-----IPVLLAGDLNSSPNSALYQF 304 (462)
Q Consensus 238 l~~~~~g~~l~V~ntHL~~~p~~~~~R~~Q~~~Ll~~l~~~~~~~~~-----~pvIl~GDFNs~P~s~~y~~ 304 (462)
+ .++++|||+.++ .+..+.+|++.+.+.+... +. .|+|||||||..|++..+++
T Consensus 139 ------~-~~~ff~tHa~a~--~g~da~a~v~~I~~~~~~~----~~~~~~~~pwii~GDFNr~P~sl~~~l 197 (262)
T 2f1n_A 139 ------G-NDAFFTAHAIAM--RNNDAPALVEEVYNFFRDS----RDPVHQALNWMILGDFNREPADLEMNL 197 (262)
T ss_dssp ------T-TEEEEEEECCSS--SSCSHHHHHHHHHHHHHTC----SSHHHHTCEEEEEEECSSCHHHHHTTS
T ss_pred ------C-CEEEEEEEecCC--CCccHHHHHHHHHHHHhcC----cccccCCCcEEEEecCCCCCcchhhhh
Confidence 2 389999999975 3456888888877776542 23 69999999999999876653
No 29
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=99.59 E-value=3.2e-14 Score=142.72 Aligned_cols=167 Identities=18% Similarity=0.163 Sum_probs=98.2
Q ss_pred CeeEEEEcccCcccccCcCCCCCCCCCccCCChHHHHHHHHHHHh---hcCCce--EeeecccC----------------
Q 012486 103 DKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMS---SYNASI--LCLQEVDH---------------- 161 (462)
Q Consensus 103 ~~~rV~SyNIl~~~~~~~~~~~y~~~~~~~l~w~~R~~~I~~~I~---~~~pDI--IcLQEvd~---------------- 161 (462)
-.+.|+||||.+... .. .|.++|. ...||| |||||+..
T Consensus 25 ~~i~v~TwNv~g~~~------------~~---------~l~~~L~~~~~~~~DI~viglQEiv~l~~~~~~~~~~~~~~~ 83 (347)
T 1i9z_A 25 VKIFVASYNLNGCSA------------TT---------KLENWLFPENTPLADIYVVGFQEIVQLTPQQVISADPAKRRE 83 (347)
T ss_dssp EEEEEEEEECTTCCC------------CS---------CCHHHHSCSSSCCCSEEEEEEECSSCCC-----CCCHHHHHH
T ss_pred cEEEEEeEecCCCCC------------ch---------hHHHHhccccCCCCCEEEEEeEEeecCchhhhcccCchhHHH
Confidence 569999999986421 01 1445554 368999 99999831
Q ss_pred hH-hHHHHHhh-----CCceEEEecCCCCCCceeEEEEccCCceeeeeeeeeecccCC----CCceeEEEEEEechhhhh
Q 012486 162 FD-DLDDLLQM-----DGFRGVYKARTGDANDGCAIFWKEKLFTLLHQENIEFQNFGL----RHNVAQLCVLKMNQSLLE 231 (462)
Q Consensus 162 ~~-~l~~~L~~-----~gY~~~~~~~~~~~~~G~aI~~r~srf~l~~~~~i~~~~~~~----~~~~~~~~~l~~~~~~~~ 231 (462)
+. .+...|.. .+|..+.... -.+.+++||.|.+..+.+..........++ ...-+..+.+.+
T Consensus 84 w~~~i~~~L~~~~~~~~~Y~~v~s~~--l~g~~L~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gnKGav~vr~~~------ 155 (347)
T 1i9z_A 84 WESCVKRLLNGKCTSGPGYVQLRSGQ--LVGTALMIFCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDY------ 155 (347)
T ss_dssp HHHHHHHHHHHTCCSSCCEEEEEEEE--ETTEEEEEEEEGGGGGGEEEEEEEEEECCCC----CCEEEEEEEEE------
T ss_pred HHHHHHHHHhhcccCCCceeEEEEee--ccceEEEEEEehHhhhhccceeeeeEeccCCCccCCCceEEEEEEE------
Confidence 11 23455653 4555443221 235788999887755443322222212221 112233333332
Q ss_pred hhhhcccccccCCCEEEEEeeCCCCCCCCchhHHHHHHHHHHHHHHHhh--hcCCCCEEEcccCC---CCCCchhHHHHh
Q 012486 232 SAEESSLSMVSQSQSLVVGNIHVLFNPNRGDIKLGQIRLFLEKAYKLSQ--EWGGIPVLLAGDLN---SSPNSALYQFLA 306 (462)
Q Consensus 232 ~~~~~~l~~~~~g~~l~V~ntHL~~~p~~~~~R~~Q~~~Ll~~l~~~~~--~~~~~pvIl~GDFN---s~P~s~~y~~L~ 306 (462)
.+..|+++|+||.++....+.|..|...+++.+.-... -....++|+||||| ..|.+.+.+++.
T Consensus 156 -----------~~~~l~fvn~HLaa~~~~~~~R~~d~~~I~~~l~f~~~~~i~~~d~v~~~GDlNyRi~~~~~~v~~~i~ 224 (347)
T 1i9z_A 156 -----------EDTGLCFITSHLAAGYTNYDERDHDYRTIASGLRFRRGRSIFNHDYVVWFGDFNYRISLTYEEVVPCIA 224 (347)
T ss_dssp -----------TTEEEEEEEEECCCCSSCHHHHHHHHHHHHHHCCCGGGCCTTSSSEEEEEEECCCCBSSCHHHHHHHHH
T ss_pred -----------CCeEEEEEEecCCCCCccHHHHHHHHHHHHHhhccCcccccccCccEEEecccccccCCCHHHHHHHHh
Confidence 46789999999997654445688888877765431000 01236899999999 666667777777
Q ss_pred cCC
Q 012486 307 SSE 309 (462)
Q Consensus 307 ~~~ 309 (462)
.+.
T Consensus 225 ~~~ 227 (347)
T 1i9z_A 225 QGK 227 (347)
T ss_dssp TTC
T ss_pred hcc
Confidence 654
No 30
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=99.37 E-value=5.2e-12 Score=127.01 Aligned_cols=161 Identities=12% Similarity=0.068 Sum_probs=89.5
Q ss_pred CeeEEEEcccCcccccCcCCCCCCCCCccCCChHHHHHHHHHHHhhcCCce--EeeecccCh-Hh----HHHHHhhCCce
Q 012486 103 DKFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSSYNASI--LCLQEVDHF-DD----LDDLLQMDGFR 175 (462)
Q Consensus 103 ~~~rV~SyNIl~~~~~~~~~~~y~~~~~~~l~w~~R~~~I~~~I~~~~pDI--IcLQEvd~~-~~----l~~~L~~~gY~ 175 (462)
-.+.|+||||.+.... + ..+. .++...+....||| |||||+... .. +...|. .+|.
T Consensus 26 l~i~v~TwNv~g~~~~----------~-~~L~-----~~l~~~~~~~~pDI~viGlQEi~~~~~~W~~~l~~~L~-~~Y~ 88 (357)
T 2xsw_A 26 VALFVATWNMQGQKEL----------P-PSLD-----EFLLPAEADYAQDLYVIGVQEGCSDRREWETRLQETLG-PHYV 88 (357)
T ss_dssp EEEEEEEEECTTCSSC----------C-SCCH-----HHHSCTTCCSCCSEEEEEEESCCSCHHHHHHHHHHHHC-TTEE
T ss_pred ceEEEEEEecCCCCCC----------c-ccHH-----HHhccccccCCCCEEEEEeeeccchHHHHHHHHHHHhC-Cccc
Confidence 4689999999964211 1 1111 11222233467996 999999752 22 334443 3444
Q ss_pred EEEecCCCCCCceeEEEEccCCceeeeeeeeeecccCC---CCcee-EEEEEEechhhhhhhhhcccccccCCCEEEEEe
Q 012486 176 GVYKARTGDANDGCAIFWKEKLFTLLHQENIEFQNFGL---RHNVA-QLCVLKMNQSLLESAEESSLSMVSQSQSLVVGN 251 (462)
Q Consensus 176 ~~~~~~~~~~~~G~aI~~r~srf~l~~~~~i~~~~~~~---~~~~~-~~~~l~~~~~~~~~~~~~~l~~~~~g~~l~V~n 251 (462)
.+... .-++-+++||.|++..+.+..........++ -.|-+ ..+.+. ..+..|+++|
T Consensus 89 ~v~s~--~l~g~~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gNKGav~vr~~-----------------~~~t~~~Fvn 149 (357)
T 2xsw_A 89 LLSSA--AHGVLYMSLFIRRDLIWFCSEVECSTVTTRIVSQIKTKGALGISFT-----------------FFGTSFLFIT 149 (357)
T ss_dssp EEEEE--EETTEEEEEEEEGGGGGGBBCCEEEEEEEEEEETTEEEEEEEEEEE-----------------ETTEEEEEEE
T ss_pred chhhh--hhhhEEEEEEEchHHhhcCceeEecccccccccccccccEEEEEEE-----------------ECCeEEEEEE
Confidence 33221 1235778999887655444333222222111 11222 222232 2478999999
Q ss_pred eCCCCCCCCchhHHHHHHHHHHHHHHHhh--------------hcCCCCEEEcccCCCCCCc
Q 012486 252 IHVLFNPNRGDIKLGQIRLFLEKAYKLSQ--------------EWGGIPVLLAGDLNSSPNS 299 (462)
Q Consensus 252 tHL~~~p~~~~~R~~Q~~~Ll~~l~~~~~--------------~~~~~pvIl~GDFNs~P~s 299 (462)
+||.++......|..|...+++.+.--.. .....++|++||||-..+.
T Consensus 150 ~HLaa~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~d~vfw~GDlNyRi~~ 211 (357)
T 2xsw_A 150 SHFTSGDGKVAERLLDYTRTVQALVLPRNVPDTNPYRSSAADVTTRFDEVFWFGDFNFRLSG 211 (357)
T ss_dssp EECCCSTTCHHHHHHHHHHHHHHCCCCSSSCCSSGGGCBTTBGGGSSSEEEEEEECCCCBSS
T ss_pred EccCCCCchHHHHHHHHHHHHHHhcccccccccccccccccccccccceEEEecccCccccc
Confidence 99998654445688888877776531000 0013579999999988775
No 31
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=98.78 E-value=8.5e-07 Score=87.18 Aligned_cols=142 Identities=15% Similarity=0.031 Sum_probs=79.1
Q ss_pred cCCceE--eeecccCh----H-hHHHHHhh---CCceEEEecCCCCCCceeEEEEccCCceeeeeeeeeecccCC---CC
Q 012486 149 YNASIL--CLQEVDHF----D-DLDDLLQM---DGFRGVYKARTGDANDGCAIFWKEKLFTLLHQENIEFQNFGL---RH 215 (462)
Q Consensus 149 ~~pDII--cLQEvd~~----~-~l~~~L~~---~gY~~~~~~~~~~~~~G~aI~~r~srf~l~~~~~i~~~~~~~---~~ 215 (462)
..|||+ ||||+... . .+...|.. ..|..+.... -.+-.++||.|++..+.+..........++ -.
T Consensus 46 ~~~DiyviG~QE~~~~~~~W~~~i~~~L~~~~~~~Y~~v~s~~--L~gi~l~Vfvk~~~~~~I~~v~~~~v~tG~~g~~G 123 (316)
T 4a9c_A 46 IPHDIYVFGTQENSVGDREWLDLLRGGLKELTDLDYRPIAMQS--LWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLG 123 (316)
T ss_dssp SCCSEEEEEEESCCSCHHHHHHHHHHHHHHHHSCCCEEEEEEE--ETTEEEEEEECGGGGGGEEEEEEEEEEEC------
T ss_pred CCCcEEEEeccccccchhHHHHHHHHHhccccCCCEEEEEeee--ehheeeeeEEeHHHhhhCcccccceeeeeeeEecC
Confidence 357987 99999642 2 24455553 4566554322 235788999888765544443322222222 12
Q ss_pred cee-EEEEEEechhhhhhhhhcccccccCCCEEEEEeeCCCCCCCCchhHHHHHHHHHHHHH----HHhhh---cCCCCE
Q 012486 216 NVA-QLCVLKMNQSLLESAEESSLSMVSQSQSLVVGNIHVLFNPNRGDIKLGQIRLFLEKAY----KLSQE---WGGIPV 287 (462)
Q Consensus 216 ~~~-~~~~l~~~~~~~~~~~~~~l~~~~~g~~l~V~ntHL~~~p~~~~~R~~Q~~~Ll~~l~----~~~~~---~~~~pv 287 (462)
|-+ ..+.+.+ .+..|+++|+||.++......|..+...|++.+. .+... .....|
T Consensus 124 NKGaV~ir~~~-----------------~~ts~~FVn~HLaAg~~~~~~Rn~d~~~I~~~l~f~~~~~~~~d~~~~~d~v 186 (316)
T 4a9c_A 124 NKGAVGVSFMF-----------------NGTSFGFVNCHLTSGNEKTARRNQNYLDILRLLSLGDRQLNAFDISLRFTHL 186 (316)
T ss_dssp CEEEEEEEEEE-----------------TTEEEEEEEEECCCSTTCHHHHHHHHHHHHHHCCC-------CCTTTTSSEE
T ss_pred CCceEEEEEEE-----------------CCcEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCCcCccccCCcCCeE
Confidence 323 2223332 4679999999999765544567777777776542 01000 001248
Q ss_pred EEcccCCCCCC---chhHHHHhcCC
Q 012486 288 LLAGDLNSSPN---SALYQFLASSE 309 (462)
Q Consensus 288 Il~GDFNs~P~---s~~y~~L~~~~ 309 (462)
|++||||-.-+ ..+.+++..+.
T Consensus 187 fw~GDLNyRi~~~~~~v~~~i~~~~ 211 (316)
T 4a9c_A 187 FWFGDLNYRLDMDIQEILNYISRKE 211 (316)
T ss_dssp EEEEECCCCBSSCHHHHHHHHHTTC
T ss_pred EEcCCccCCcCCCHHHHHHHHhccc
Confidence 99999996543 34555555544
No 32
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=98.74 E-value=6.8e-07 Score=87.69 Aligned_cols=164 Identities=16% Similarity=0.166 Sum_probs=87.9
Q ss_pred eeEEEEcccCcccccCcCCCCCCCCCccCCChHHHHHHHHHHHhh--cCCc--eEeeecccCh------------HhH--
Q 012486 104 KFVVVSYNILGVENALKHPDLYDKVPPKFLKWERRKKLIREEMSS--YNAS--ILCLQEVDHF------------DDL-- 165 (462)
Q Consensus 104 ~~rV~SyNIl~~~~~~~~~~~y~~~~~~~l~w~~R~~~I~~~I~~--~~pD--IIcLQEvd~~------------~~l-- 165 (462)
++.|+||||.+... ... |.++|.. ..|| ||||||++.. ..+
T Consensus 9 ~i~v~TwNvng~~~------------~~~---------l~~wL~~~~~~pDI~viGlQE~~l~~~~~~~~~~~~~~~W~~ 67 (313)
T 3mtc_A 9 RFFAGTYNVNGQSP------------KEC---------LRLWLSNGIQAPDVYCVGFQELDLSKEAFFFHDTPKEEEWFK 67 (313)
T ss_dssp EEEEEEEECTTCCC------------CSC---------THHHHSSSCCCCSEEEEEEECSCCSHHHHTTCCCHHHHHHHH
T ss_pred EEEEEEEEcCCccC------------chh---------HHHHhcccCCCCCeEEEEEEecccchhhhcccCcchHHHHHH
Confidence 57789999997531 111 2344443 6799 7999999521 112
Q ss_pred --HHHHhh-CCceEEEecCCCCCCceeEEEEccCCceeeeeeeeeecccCC---CCce-eEEEEEEechhhhhhhhhccc
Q 012486 166 --DDLLQM-DGFRGVYKARTGDANDGCAIFWKEKLFTLLHQENIEFQNFGL---RHNV-AQLCVLKMNQSLLESAEESSL 238 (462)
Q Consensus 166 --~~~L~~-~gY~~~~~~~~~~~~~G~aI~~r~srf~l~~~~~i~~~~~~~---~~~~-~~~~~l~~~~~~~~~~~~~~l 238 (462)
...|.. ..|..+.... -.+-.+.||.|++..+.+..-.......++ -.|- |..+.+.+
T Consensus 68 ~i~~~L~~~~~Y~~v~s~~--lvGl~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~GNKGaV~ir~~~------------- 132 (313)
T 3mtc_A 68 AVSEGLHPDAKYAKVKLIR--LVGIMLLLYVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQF------------- 132 (313)
T ss_dssp HHHHHSCTTSCEEEEEEEE--ETTEEEEEEEEGGGGGGEEEEEEEEEECSGGGTSTTSEEEEEEEEE-------------
T ss_pred HHHHhcCCCCCEEEEEEec--hhhhhhhhhhhhhhhhhcceeEeeeecccccccccCCceEEEEEEE-------------
Confidence 233322 2465543221 124556788887755544443332222221 1222 33333332
Q ss_pred ccccCCCEEEEEeeCCCCCCCCchhHHHHHHHHHHHHHHHhhh---------cCCCCEEEcccCCCCCC----chhHHHH
Q 012486 239 SMVSQSQSLVVGNIHVLFNPNRGDIKLGQIRLFLEKAYKLSQE---------WGGIPVLLAGDLNSSPN----SALYQFL 305 (462)
Q Consensus 239 ~~~~~g~~l~V~ntHL~~~p~~~~~R~~Q~~~Ll~~l~~~~~~---------~~~~pvIl~GDFNs~P~----s~~y~~L 305 (462)
.+..|+++|+||.++-.....|..+...+++.+. +... ....-+|++||||-.-+ ..+.+++
T Consensus 133 ----~~ts~cFVnsHLaA~~~~~~~Rn~d~~~I~~~l~-f~~~~~~~~~~~i~~~d~vfw~GDLNyRi~~~~~~~v~~~i 207 (313)
T 3mtc_A 133 ----HNTSICVVNSHLAAHIEEYERRNQDYKDICSRMQ-FCQPDPSLPPLTISNHDVILWLGDLNYRIEELDVEKVKKLI 207 (313)
T ss_dssp ----TTEEEEEEEEECCCSGGGHHHHHHHHHHHHHHCC-BCCSCSSSCCBCTTSSSEEEEEEECCCCBCSSCHHHHHHHH
T ss_pred ----CCcEEEEEeeccCCCchHHHHHHHHHHHHHHhcc-cCCCCCccCCccccCCceEEEeccccccccCCCHHHHHHHH
Confidence 3678999999998754333456666766666542 1000 01234999999997653 2344444
Q ss_pred hcC
Q 012486 306 ASS 308 (462)
Q Consensus 306 ~~~ 308 (462)
..+
T Consensus 208 ~~~ 210 (313)
T 3mtc_A 208 EEK 210 (313)
T ss_dssp HTT
T ss_pred hcC
Confidence 444
No 33
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=20.42 E-value=1.5e+02 Score=28.08 Aligned_cols=50 Identities=14% Similarity=0.067 Sum_probs=23.3
Q ss_pred EEEEEeeCCCC---CCCCchhHH-HHHHHHHHHHHHHhhhcCCCCEEEccc--CCCC
Q 012486 246 SLVVGNIHVLF---NPNRGDIKL-GQIRLFLEKAYKLSQEWGGIPVLLAGD--LNSS 296 (462)
Q Consensus 246 ~l~V~ntHL~~---~p~~~~~R~-~Q~~~Ll~~l~~~~~~~~~~pvIl~GD--FNs~ 296 (462)
.+.+.=+||.. .+..+..|. .|...+-+.++.+.+. ...-||++|| |+..
T Consensus 21 ilh~SD~HlG~~~~~~~~~~~r~~~~~~~l~~lv~~~~~~-~~D~vliaGD~l~d~~ 76 (336)
T 2q8u_A 21 ILHTSDWHLGVTSWTSSRPVDRREELKKALDKVVEEAEKR-EVDLILLTGDLLHSRN 76 (336)
T ss_dssp EEEEECCCBTCEECTTTCCEECHHHHHHHHHHHHHHHHHH-TCSEEEEESCSBSCSS
T ss_pred EEEECcccCCCCccccccCcChhHHHHHHHHHHHHHHHHh-CCCEEEECCccccCCC
Confidence 56667788862 121222232 2332222223322221 2346999999 5543
Done!