BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012487
(462 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4DQN|A Chain A, Crystal Structure Of The Branched-Chain Aminotransferase
From Streptococcus Mutans
Length = 345
Score = 229 bits (583), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 139/341 (40%), Positives = 196/341 (57%), Gaps = 14/341 (4%)
Query: 132 NLKWDELGFCLIPVDYMYVMKCSKEKNFSHGILTRFGRLEMNPSSGILNYGQGVFEGLKA 191
+L W LGF + + Y+ K+ + G LT L ++ SS L+YGQ FEGLKA
Sbjct: 8 DLDWKNLGFEYHKLPFRYI-SYYKDGKWDDGKLTEDATLHISESSPALHYGQEAFEGLKA 66
Query: 192 YRTEDGRILLFRPEQNALRMQMGADRLRMPSPTIEQFVDAVKHTVVANKQWVPPPGKG-S 250
YRT+DG + LFRP NA R+Q ADRL MP ++F+DA K V AN+++VPP G G +
Sbjct: 67 YRTKDGSVQLFRPNMNAERLQRTADRLLMPQVPTDKFIDAAKQVVRANEEYVPPYGTGAT 126
Query: 251 LYIRPLLMGSGPVLGATPAPDYTFLAFASPVGNYHKGYL---NLVVEEKFYRAFPGGTGG 307
LY+RPLL+G G V+G PA +Y F FA PVGNY KG L N ++++ + RA P GTG
Sbjct: 127 LYLRPLLIGVGDVIGVHPADEYIFTIFAMPVGNYFKGGLAPTNFLIQDDYDRAAPHGTGA 186
Query: 308 VKAIVNYSTVFKPVAEAKAKGFSDVLFLDVKTAKYIEEVSTSNIFFL-KGNVISTPATDG 366
K NY+ P A + FSDV++LD T IEEV ++N F + K N TP +
Sbjct: 187 AKVGGNYAASLLPGKVAHERQFSDVIYLDPATHTKIEEVGSANFFGITKDNEFITPLSP- 245
Query: 367 TILPGITRKSVIEIAQI-LGYQVEERAVAVEELFDSEEVFCTGTAMVVNPVNSITYQGK- 424
+ILP +T+ S++ +A+ G + E V V+EL E GTA V++P+ + +
Sbjct: 246 SILPSVTKYSLLYLAEHRFGMKAIEGDVCVDELDKFVEAGACGTAAVISPIGGVQHGDDF 305
Query: 425 ---RIEYKTGPETVAQKLYEMLVGIQTGRIEDKMGWTVELN 462
E + GP V KLY+ L GIQ G ++ GW +++
Sbjct: 306 HVFYSETEVGP--VTHKLYDELTGIQFGDVKAPEGWIYKVD 344
>pdb|3UYY|A Chain A, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UYY|B Chain B, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|A Chain A, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|B Chain B, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|C Chain C, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZB|D Chain D, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZO|A Chain A, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
pdb|3UZO|B Chain B, Crystal Structures Of Branched-Chain Aminotransferase From
Deinococcus Radiodurans Complexes With
Alpha-Ketoisocaproate And L-Glutamate Suggest Its
Radio-Resistance For Catalysis
Length = 358
Score = 223 bits (569), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 137/344 (39%), Positives = 193/344 (56%), Gaps = 12/344 (3%)
Query: 127 VEEYANLKWDELGFCLIPVDYMYVMKCSKEKNFSHGILTRFGRLEMNPSSGILNYGQGVF 186
++ A++ W LGF I D Y+ K+ + G LT ++ + S L+YGQ F
Sbjct: 18 AKKLADIDWSTLGFSYIRTDLRYLAHW-KDGEWDAGTLTEDNQIHLAEGSTALHYGQQCF 76
Query: 187 EGLKAYRTEDGRILLFRPEQNALRMQMGADRLRMPSPTIEQFVDAVKHTVVANKQWVPPP 246
EGLKAYR DG I LFRP+QNA RM+M RL MP + EQF+DA V AN+ ++PP
Sbjct: 77 EGLKAYRCADGSINLFRPDQNAARMRMSCRRLLMPELSDEQFIDACLQVVRANEHFLPPY 136
Query: 247 GK-GSLYIRPLLMGSGPVLGATPAPDYTFLAFASPVGNYHKGYL---NLVVEEKFYRAFP 302
G GSLY+RP ++G G +G AP++ F F PVG Y KG L N + + + RA P
Sbjct: 137 GTGGSLYLRPFVIGVGDNIGVRTAPEFIFSVFCVPVGPYFKGGLTPTNFITSD-YDRAAP 195
Query: 303 GGTGGVKAIVNYSTVFKPVAEAKAKGFSDVLFLDVKTAKYIEEVSTSNIFFL--KGNVIS 360
GTG K NY+ P EAK + F+DV++LD T IEE +N F + G
Sbjct: 196 HGTGAAKVGGNYAASLLPGYEAKKRDFADVIYLDPATHTTIEEAGAANFFAITQDGQKFV 255
Query: 361 TPATDGTILPGITRKSVIEIAQI-LGYQVEERAVAVEELFDSEEVFCTGTAMVVNPVNSI 419
TP + +ILP IT+ S++ +A+ LG +VEE + ++EL E GTA V+ P+ I
Sbjct: 256 TPQSP-SILPSITKYSLLWLAEHRLGLEVEEGDIRIDELGKFSEAGACGTAAVITPIGGI 314
Query: 420 TYQGK-RIEY-KTGPETVAQKLYEMLVGIQTGRIEDKMGWTVEL 461
+ + Y ++ P V ++LY+ LVGIQ G E GW V++
Sbjct: 315 QHGDDFHVFYSESEPGPVTRRLYDELVGIQYGDKEAPEGWIVKV 358
>pdb|3JZ6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Branched
Chain Aminotransferase In Complex With
Pyridoxal-5'-Phosphate At 1.9 Angstrom.
pdb|3JZ6|B Chain B, Crystal Structure Of Mycobacterium Smegmatis Branched
Chain Aminotransferase In Complex With
Pyridoxal-5'-Phosphate At 1.9 Angstrom
Length = 373
Score = 219 bits (557), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 123/339 (36%), Positives = 191/339 (56%), Gaps = 15/339 (4%)
Query: 139 GFCLIPVDYMYVMKCSKEKNFSHGILTRFGRLEMNPSSGILNYGQGVFEGLKAYRTEDGR 198
GF D+M + + ++ + + + +G ++++PS+ +L+YGQ +FEGLKAYR DG
Sbjct: 35 GFGKYYTDHMVSIDYTVDEGWHNAQVIPYGPIQLDPSAIVLHYGQEIFEGLKAYRWADGS 94
Query: 199 ILLFRPEQNALRMQMGADRLRMPSPTIEQFVDAVKHTVVANKQWVPPP-GKGSLYIRPLL 257
I+ FRPE NA R+Q A RL +P E F+++++ + +++WVPP G+ SLY+RP +
Sbjct: 95 IVSFRPEANAARLQSSARRLAIPELPEEVFIESLRQLIAVDEKWVPPAGGEESLYLRPFV 154
Query: 258 MGSGPVLGATPAPDYTFLAFASPVGNYHKGYLNLV---VEEKFYRAFPGGTGGVKAIVNY 314
+ + P LG P+ +Y +L ASP G Y KG + V + ++ RA PGGTG K NY
Sbjct: 155 IATEPGLGVRPSNEYRYLLIASPAGAYFKGGIKPVSVWLSHEYVRASPGGTGAAKFGGNY 214
Query: 315 STVFKPVAEAKAKGFSDVLFLDVKTAKYIEEVSTSNIFFLKGN----VISTPATDGTILP 370
+ A+A G V++LD +Y+EE+ N+FF+ G+ + TP G++LP
Sbjct: 215 AASLLAQAQAAEMGCDQVVWLDAIERRYVEEMGGMNLFFVFGSGGSARLVTPELSGSLLP 274
Query: 371 GITRKSVIEIAQILGYQVEERAVAVEEL------FDSEEVFCTGTAMVVNPVNSITYQGK 424
GITR S++++A G+ VEER + V+E + EVF GTA V+ PV+ + +
Sbjct: 275 GITRDSLLQLATDAGFAVEERKIDVDEWQKKAGAGEITEVFACGTAAVITPVSHVKHHDG 334
Query: 425 RIEYKTG-PETVAQKLYEMLVGIQTGRIEDKMGWTVELN 462
G P + L + L GIQ G D GW LN
Sbjct: 335 EFTIADGQPGEITMALRDTLTGIQRGTFADTHGWMARLN 373
>pdb|3DTF|A Chain A, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTF|B Chain B, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTG|A Chain A, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
pdb|3DTG|B Chain B, Structural Analysis Of Mycobacterial Branched Chain
Aminotransferase- Implications For Inhibitor Design
Length = 372
Score = 219 bits (557), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 123/339 (36%), Positives = 191/339 (56%), Gaps = 15/339 (4%)
Query: 139 GFCLIPVDYMYVMKCSKEKNFSHGILTRFGRLEMNPSSGILNYGQGVFEGLKAYRTEDGR 198
GF D+M + + ++ + + + +G ++++PS+ +L+YGQ +FEGLKAYR DG
Sbjct: 34 GFGKYYTDHMVSIDYTVDEGWHNAQVIPYGPIQLDPSAIVLHYGQEIFEGLKAYRWADGS 93
Query: 199 ILLFRPEQNALRMQMGADRLRMPSPTIEQFVDAVKHTVVANKQWVPPP-GKGSLYIRPLL 257
I+ FRPE NA R+Q A RL +P E F+++++ + +++WVPP G+ SLY+RP +
Sbjct: 94 IVSFRPEANAARLQSSARRLAIPELPEEVFIESLRQLIAVDEKWVPPAGGEESLYLRPFV 153
Query: 258 MGSGPVLGATPAPDYTFLAFASPVGNYHKGYLNLV---VEEKFYRAFPGGTGGVKAIVNY 314
+ + P LG P+ +Y +L ASP G Y KG + V + ++ RA PGGTG K NY
Sbjct: 154 IATEPGLGVRPSNEYRYLLIASPAGAYFKGGIKPVSVWLSHEYVRASPGGTGAAKFGGNY 213
Query: 315 STVFKPVAEAKAKGFSDVLFLDVKTAKYIEEVSTSNIFFLKGN----VISTPATDGTILP 370
+ A+A G V++LD +Y+EE+ N+FF+ G+ + TP G++LP
Sbjct: 214 AASLLAQAQAAEMGCDQVVWLDAIERRYVEEMGGMNLFFVFGSGGSARLVTPELSGSLLP 273
Query: 371 GITRKSVIEIAQILGYQVEERAVAVEEL------FDSEEVFCTGTAMVVNPVNSITYQGK 424
GITR S++++A G+ VEER + V+E + EVF GTA V+ PV+ + +
Sbjct: 274 GITRDSLLQLATDAGFAVEERKIDVDEWQKKAGAGEITEVFACGTAAVITPVSHVKHHDG 333
Query: 425 RIEYKTG-PETVAQKLYEMLVGIQTGRIEDKMGWTVELN 462
G P + L + L GIQ G D GW LN
Sbjct: 334 EFTIADGQPGEITMALRDTLTGIQRGTFADTHGWMARLN 372
>pdb|3HT5|A Chain A, Crystal Structure Of Ilve A Branched Chain Amino Acid
Transaminase From Mycobacterium Tuberculosis
Length = 368
Score = 214 bits (545), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 123/341 (36%), Positives = 184/341 (53%), Gaps = 15/341 (4%)
Query: 137 ELGFCLIPVDYMYVMKCSKEKNFSHGILTRFGRLEMNPSSGILNYGQGVFEGLKAYRTED 196
E GF D+M + ++ + + + + +G +E++PS+ +L+Y Q VFEGLKAYR D
Sbjct: 28 EPGFGKYHTDHMVSIDYAEGRGWHNARVIPYGPIELDPSAIVLHYAQEVFEGLKAYRWAD 87
Query: 197 GRILLFRPEQNALRMQMGADRLRMPSPTIEQFVDAVKHTVVANKQWVP-PPGKGSLYIRP 255
G I+ FR + NA R++ A RL +P F+++++ + +K WVP G+ +LY+RP
Sbjct: 88 GSIVSFRADANAARLRSSARRLAIPELPDAVFIESLRQLIAVDKAWVPGAGGEEALYLRP 147
Query: 256 LLMGSGPVLGATPAPDYTFLAFASPVGNYHKGYL---NLVVEEKFYRAFPGGTGGVKAIV 312
+ + P LG PA Y +L ASP G Y KG + ++ V ++ RA PGGTG K
Sbjct: 148 FIFATEPGLGVRPATQYRYLLIASPAGAYFKGGIAPVSVWVSTEYVRACPGGTGAAKFGG 207
Query: 313 NYSTVFKPVAEAKAKGFSDVLFLDVKTAKYIEEVSTSNIFFLKGN----VISTPATDGTI 368
NY+ AEA G V++LD +YIEE+ NIFF+ G+ + TP G++
Sbjct: 208 NYAASLLAQAEAAENGCDQVVWLDAVERRYIEEMGGMNIFFVLGSGGSARLVTPELSGSL 267
Query: 369 LPGITRKSVIEIAQILGYQVEERAVAVEEL------FDSEEVFCTGTAMVVNPVNSITYQ 422
LPGITR S++++A G+ VEER + ++E + EVF GTA V+ PV + +
Sbjct: 268 LPGITRDSLLQLAIDAGFAVEERRIDIDEWQKKAAAGEITEVFACGTAAVITPVARVRHG 327
Query: 423 GKRIEYKTG-PETVAQKLYEMLVGIQTGRIEDKMGWTVELN 462
G P V L + L GIQ G D GW L
Sbjct: 328 ASEFRIADGQPGEVTMALRDTLTGIQRGTFADTHGWMARLG 368
>pdb|2COG|A Chain A, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
4-Methylvalerate
pdb|2COG|B Chain B, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
4-Methylvalerate
pdb|2COI|A Chain A, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COI|B Chain B, Crystal Structure Of Oxidized Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COJ|A Chain A, Crystal Structure Of Reduced Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
pdb|2COJ|B Chain B, Crystal Structure Of Reduced Human Cytosolic
Branched-Chain Aminotransferase Complexed With
Gabapentin
Length = 386
Score = 168 bits (425), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 116/346 (33%), Positives = 176/346 (50%), Gaps = 23/346 (6%)
Query: 136 DELGFCLIPVDYMYVMKCSKEKNFSHGILTRFGRLEMNPSSGILNYGQGVFEGLKAYRTE 195
+ L F + D+M ++ S E + + L ++P S L+Y +FEGLKA+R
Sbjct: 45 NNLVFGTVFTDHMLTVEWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFRGV 104
Query: 196 DGRILLFRPEQNALRMQMGADRLRMPSPTIEQFVDAVKHTVVANKQWVPPPGKGSLYIRP 255
D +I LF+P N RM A R +P E+ ++ ++ V +++WVP SLYIRP
Sbjct: 105 DNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYIRP 164
Query: 256 LLMGSGPVLGATPAPDYTFLAFASPVGNY-HKGYLN---LVVEEKFYRAFPGGTGGVKAI 311
+G+ P LG SPVG Y G N L K+ RA+ GGTG K
Sbjct: 165 TFIGTEPSLGVKKPTKALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCKMG 224
Query: 312 VNYSTVFKPVAEAKAKGFSDVLFLDVKTAKYIEEVSTSNIFFLKGN-----VISTPATDG 366
NY + EA G VL+L + + I EV T N+F N ++TP DG
Sbjct: 225 GNYGSSLFAQCEAVDNGCQQVLWLYGEDHQ-ITEVGTMNLFLYWINEDGEEELATPPLDG 283
Query: 367 TILPGITRKSVIEIAQILG-YQVEERAVAVEELFDS------EEVFCTGTAMVVNPVNSI 419
ILPG+TR+ ++++A G ++V ER + +++L + E+F +GTA VV PV+ I
Sbjct: 284 IILPGVTRRCILDLAHQWGEFKVSERYLTMDDLTTALEGNRVREMFGSGTACVVCPVSDI 343
Query: 420 TYQGKRIEYKT---GPETVAQKLYEMLVGIQTGRIEDKMGWTVELN 462
Y+G+ I T GP+ +A ++ L IQ GR ++ WT+ L+
Sbjct: 344 LYKGETIHIPTMENGPK-LASRILSKLTDIQYGR--EERDWTIVLS 386
>pdb|2ABJ|A Chain A, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|D Chain D, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|G Chain G, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate.
pdb|2ABJ|J Chain J, Crystal Structure Of Human Branched Chain Amino Acid
Transaminase In A Complex With An Inhibitor,
C16h10n2o4f3scl, And Pyridoxal 5' Phosphate
Length = 366
Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 116/346 (33%), Positives = 174/346 (50%), Gaps = 23/346 (6%)
Query: 136 DELGFCLIPVDYMYVMKCSKEKNFSHGILTRFGRLEMNPSSGILNYGQGVFEGLKAYRTE 195
+ L F + D+M ++ S E + + L ++P S L+Y +FEGLKA+R
Sbjct: 25 NNLVFGTVFTDHMLTVEWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFRGV 84
Query: 196 DGRILLFRPEQNALRMQMGADRLRMPSPTIEQFVDAVKHTVVANKQWVPPPGKGSLYIRP 255
D +I LF+P N RM A R +P E+ ++ ++ V +++WVP SLYIRP
Sbjct: 85 DNKIRLFQPNLNMDRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYIRP 144
Query: 256 LLMGSGPVLGATPAPDYTFLAFASPVGNY-HKGYLN---LVVEEKFYRAFPGGTGGVKAI 311
+G+ P LG SPVG Y G N L K+ RA+ GGTG K
Sbjct: 145 AFIGTEPSLGVKKPTKALLFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCKMG 204
Query: 312 VNYSTVFKPVAEAKAKGFSDVLFLDVKTAKYIEEVSTSNIFFLKGN-----VISTPATDG 366
NY + E G VL+L + + I EV T N+F N ++TP DG
Sbjct: 205 GNYGSSLFAQCEDVDNGCQQVLWLYGRDHQ-ITEVGTMNLFLYWINEDGEEELATPPLDG 263
Query: 367 TILPGITRKSVIEIAQILG-YQVEERAVAVEELFDS------EEVFCTGTAMVVNPVNSI 419
ILPG+TR+ ++++A G ++V ER + +++L + E+F +GTA VV PV+ I
Sbjct: 264 IILPGVTRRCILDLAHQWGEFKVSERYLTMDDLTTALEGNRVREMFSSGTACVVCPVSDI 323
Query: 420 TYQGKRIEYKT---GPETVAQKLYEMLVGIQTGRIEDKMGWTVELN 462
Y+G+ I T GP+ +A ++ L IQ GR E WT+ L+
Sbjct: 324 LYKGETIHIPTMENGPK-LASRILSKLTDIQYGREESD--WTIVLS 366
>pdb|2HHF|B Chain B, X-ray Crystal Structure Of Oxidized Human Mitochondrial
Branched Chain Aminotransferase (hbcatm)
Length = 365
Score = 152 bits (385), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 103/325 (31%), Positives = 169/325 (52%), Gaps = 24/325 (7%)
Query: 146 DYMYVMKCSKEKNFSHGILTRFGRLEMNPSSGILNYGQGVFEGLKAYRTEDGRILLFRPE 205
D+M +++ + +K + + F L ++P+S L+Y +FEG+KA++ +D ++ LFRP
Sbjct: 36 DHMLMVEWN-DKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKDQQVRLFRPW 94
Query: 206 QNALRMQMGADRLRMPSPTIEQFVDAVKHTVVANKQWVPPPGKGSLYIRPLLMGSGPVLG 265
N RM A RL +PS + ++ ++ + +K WVP SLY+RP+L+G+ P LG
Sbjct: 95 LNMDRMLRSAMRLXLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSLG 154
Query: 266 ATPAPDYTFLAFASPVGNYHKG----YLNLVVEEKFYRAFPGGTGGVKAIVNYSTVFKPV 321
+ PVG Y G ++L+ + F RA+ GG G K NY
Sbjct: 155 VSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQ 214
Query: 322 AEAKAKGFSDVLFLDVKTAKYIEEVSTSNIFFLKGN-----VISTPATDGTILPGITRKS 376
EA +G VL+L + EV T NIF + + TP +G ILPG+ R+S
Sbjct: 215 QEALKRGCEQVLWL-YGPDHQLTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQS 273
Query: 377 VIEIAQILG-YQVEERAVAVEELFDS------EEVFCTGTAMVVNPVNSITYQGKRIEYK 429
++++AQ G ++V ER + +++L + EVF +GTA V PV+ I Y+ + +
Sbjct: 274 LLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHRILYKDRNLHIP 333
Query: 430 T---GPETV---AQKLYEMLVGIQT 448
T GPE + ++L E+ GI+
Sbjct: 334 TMENGPELILRFQKELKEIQYGIRA 358
>pdb|2HGW|A Chain A, Crystal Structure Of Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
pdb|2HGW|B Chain B, Crystal Structure Of Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
Length = 365
Score = 152 bits (383), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 103/325 (31%), Positives = 169/325 (52%), Gaps = 24/325 (7%)
Query: 146 DYMYVMKCSKEKNFSHGILTRFGRLEMNPSSGILNYGQGVFEGLKAYRTEDGRILLFRPE 205
D+M +++ + +K + + F L ++P+S L+Y +FEG+KA++ +D ++ LFRP
Sbjct: 36 DHMLMVEWN-DKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKDQQVRLFRPW 94
Query: 206 QNALRMQMGADRLRMPSPTIEQFVDAVKHTVVANKQWVPPPGKGSLYIRPLLMGSGPVLG 265
N RM A RL +PS + ++ ++ + +K WVP SLY+RP+L+G+ P LG
Sbjct: 95 LNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSLG 154
Query: 266 ATPAPDYTFLAFASPVGNYHKG----YLNLVVEEKFYRAFPGGTGGVKAIVNYSTVFKPV 321
+ PVG Y G ++L+ + F RA+ GG G K NY
Sbjct: 155 VSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQ 214
Query: 322 AEAKAKGFSDVLFLDVKTAKYIEEVSTSNIFFLKGN-----VISTPATDGTILPGITRKS 376
EA +G VL+L + EV T NIF + + TP +G ILPG+ R+S
Sbjct: 215 QEALKRGCEQVLWL-YGPDHQLTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQS 273
Query: 377 VIEIAQILG-YQVEERAVAVEELFDS------EEVFCTGTAMVVNPVNSITYQGKRIEYK 429
++++AQ G ++V ER + +++L + EVF +GTA V PV+ I Y+ + +
Sbjct: 274 LLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVAPVHRILYKDRNLHIP 333
Query: 430 T---GPETV---AQKLYEMLVGIQT 448
T GPE + ++L E+ GI+
Sbjct: 334 TMENGPELILRFQKELKEIQYGIRA 358
>pdb|1EKF|A Chain A, Crystallographic Structure Of Human Branched Chain Amino
Acid Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'- Phosphate At 1.95 Angstroms (Orthorhombic
Form)
pdb|1EKF|B Chain B, Crystallographic Structure Of Human Branched Chain Amino
Acid Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'- Phosphate At 1.95 Angstroms (Orthorhombic
Form)
pdb|1EKP|A Chain A, Crystal Structure Of Human Branched Chain Amino Acid
Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'-Phosphate At 2.5 Angstroms (Monoclinic
Form).
pdb|1EKP|B Chain B, Crystal Structure Of Human Branched Chain Amino Acid
Aminotransferase (Mitochondrial) Complexed With
Pyridoxal-5'-Phosphate At 2.5 Angstroms (Monoclinic
Form).
pdb|1EKV|A Chain A, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
Inactivated By Tris Bound To The Pyridoxal-5'-Phosphate
On One End And Active Site Lys202 Nz On The Other.
pdb|1EKV|B Chain B, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
Inactivated By Tris Bound To The Pyridoxal-5'-Phosphate
On One End And Active Site Lys202 Nz On The Other.
pdb|1KT8|A Chain A, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
In Its Ketimine Form With The Substrate L-Isoleucine
pdb|1KT8|B Chain B, Human Branched Chain Amino Acid Aminotransferase
(Mitochondrial): Three Dimensional Structure Of Enzyme
In Its Ketimine Form With The Substrate L-Isoleucine
pdb|1KTA|A Chain A, Human Branched Chain Amino Acid Aminotransferase : Three
Dimensional Structure Of The Enzyme In Its Pyridoxamine
Phosphate Form.
pdb|1KTA|B Chain B, Human Branched Chain Amino Acid Aminotransferase : Three
Dimensional Structure Of The Enzyme In Its Pyridoxamine
Phosphate Form.
pdb|2A1H|A Chain A, X-Ray Crystal Structure Of Human Mitochondrial Branched
Chain Aminotransferase (Bcatm) Complexed With Gabapentin
pdb|2A1H|B Chain B, X-Ray Crystal Structure Of Human Mitochondrial Branched
Chain Aminotransferase (Bcatm) Complexed With Gabapentin
Length = 365
Score = 152 bits (383), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 103/325 (31%), Positives = 169/325 (52%), Gaps = 24/325 (7%)
Query: 146 DYMYVMKCSKEKNFSHGILTRFGRLEMNPSSGILNYGQGVFEGLKAYRTEDGRILLFRPE 205
D+M +++ + +K + + F L ++P+S L+Y +FEG+KA++ +D ++ LFRP
Sbjct: 36 DHMLMVEWN-DKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKDQQVRLFRPW 94
Query: 206 QNALRMQMGADRLRMPSPTIEQFVDAVKHTVVANKQWVPPPGKGSLYIRPLLMGSGPVLG 265
N RM A RL +PS + ++ ++ + +K WVP SLY+RP+L+G+ P LG
Sbjct: 95 LNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSLG 154
Query: 266 ATPAPDYTFLAFASPVGNYHKG----YLNLVVEEKFYRAFPGGTGGVKAIVNYSTVFKPV 321
+ PVG Y G ++L+ + F RA+ GG G K NY
Sbjct: 155 VSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQ 214
Query: 322 AEAKAKGFSDVLFLDVKTAKYIEEVSTSNIFFLKGN-----VISTPATDGTILPGITRKS 376
EA +G VL+L + EV T NIF + + TP +G ILPG+ R+S
Sbjct: 215 QEALKRGCEQVLWL-YGPDHQLTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQS 273
Query: 377 VIEIAQILG-YQVEERAVAVEELFDS------EEVFCTGTAMVVNPVNSITYQGKRIEYK 429
++++AQ G ++V ER + +++L + EVF +GTA V PV+ I Y+ + +
Sbjct: 274 LLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHRILYKDRNLHIP 333
Query: 430 T---GPETV---AQKLYEMLVGIQT 448
T GPE + ++L E+ GI+
Sbjct: 334 TMENGPELILRFQKELKEIQYGIRA 358
>pdb|2HDK|A Chain A, Crystal Structure Of Cys315ala-Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
pdb|2HDK|B Chain B, Crystal Structure Of Cys315ala-Cys318ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
Length = 365
Score = 152 bits (383), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 103/325 (31%), Positives = 169/325 (52%), Gaps = 24/325 (7%)
Query: 146 DYMYVMKCSKEKNFSHGILTRFGRLEMNPSSGILNYGQGVFEGLKAYRTEDGRILLFRPE 205
D+M +++ + +K + + F L ++P+S L+Y +FEG+KA++ +D ++ LFRP
Sbjct: 36 DHMLMVEWN-DKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKDQQVRLFRPW 94
Query: 206 QNALRMQMGADRLRMPSPTIEQFVDAVKHTVVANKQWVPPPGKGSLYIRPLLMGSGPVLG 265
N RM A RL +PS + ++ ++ + +K WVP SLY+RP+L+G+ P LG
Sbjct: 95 LNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSLG 154
Query: 266 ATPAPDYTFLAFASPVGNYHKG----YLNLVVEEKFYRAFPGGTGGVKAIVNYSTVFKPV 321
+ PVG Y G ++L+ + F RA+ GG G K NY
Sbjct: 155 VSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQ 214
Query: 322 AEAKAKGFSDVLFLDVKTAKYIEEVSTSNIFFLKGN-----VISTPATDGTILPGITRKS 376
EA +G VL+L + EV T NIF + + TP +G ILPG+ R+S
Sbjct: 215 QEALKRGCEQVLWL-YGPDHQLTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQS 273
Query: 377 VIEIAQILG-YQVEERAVAVEELFDS------EEVFCTGTAMVVNPVNSITYQGKRIEYK 429
++++AQ G ++V ER + +++L + EVF +GTA V PV+ I Y+ + +
Sbjct: 274 LLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTAAQVAPVHRILYKDRNLHIP 333
Query: 430 T---GPETV---AQKLYEMLVGIQT 448
T GPE + ++L E+ GI+
Sbjct: 334 TMENGPELILRFQKELKEIQYGIRA 358
>pdb|2HG8|A Chain A, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase Complexed
With Its Substrate Mimic, N-Methyl Leucine.
pdb|2HG8|B Chain B, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase Complexed
With Its Substrate Mimic, N-Methyl Leucine.
pdb|2HGX|A Chain A, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
pdb|2HGX|B Chain B, Crystal Structure Of Cys315ala Mutant Of Human
Mitochondrial Branched Chain Aminotransferase
Length = 365
Score = 151 bits (382), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 103/325 (31%), Positives = 169/325 (52%), Gaps = 24/325 (7%)
Query: 146 DYMYVMKCSKEKNFSHGILTRFGRLEMNPSSGILNYGQGVFEGLKAYRTEDGRILLFRPE 205
D+M +++ + +K + + F L ++P+S L+Y +FEG+KA++ +D ++ LFRP
Sbjct: 36 DHMLMVEWN-DKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKDQQVRLFRPW 94
Query: 206 QNALRMQMGADRLRMPSPTIEQFVDAVKHTVVANKQWVPPPGKGSLYIRPLLMGSGPVLG 265
N RM A RL +PS + ++ ++ + +K WVP SLY+RP+L+G+ P LG
Sbjct: 95 LNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSLG 154
Query: 266 ATPAPDYTFLAFASPVGNYHKG----YLNLVVEEKFYRAFPGGTGGVKAIVNYSTVFKPV 321
+ PVG Y G ++L+ + F RA+ GG G K NY
Sbjct: 155 VSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQ 214
Query: 322 AEAKAKGFSDVLFLDVKTAKYIEEVSTSNIFFLKGN-----VISTPATDGTILPGITRKS 376
EA +G VL+L + EV T NIF + + TP +G ILPG+ R+S
Sbjct: 215 QEALKRGCEQVLWL-YGPDHQLTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQS 273
Query: 377 VIEIAQILG-YQVEERAVAVEELFDS------EEVFCTGTAMVVNPVNSITYQGKRIEYK 429
++++AQ G ++V ER + +++L + EVF +GTA V PV+ I Y+ + +
Sbjct: 274 LLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTAAQVCPVHRILYKDRNLHIP 333
Query: 430 T---GPETV---AQKLYEMLVGIQT 448
T GPE + ++L E+ GI+
Sbjct: 334 TMENGPELILRFQKELKEIQYGIRA 358
>pdb|2HHF|A Chain A, X-ray Crystal Structure Of Oxidized Human Mitochondrial
Branched Chain Aminotransferase (hbcatm)
Length = 365
Score = 149 bits (377), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 102/325 (31%), Positives = 168/325 (51%), Gaps = 24/325 (7%)
Query: 146 DYMYVMKCSKEKNFSHGILTRFGRLEMNPSSGILNYGQGVFEGLKAYRTEDGRILLFRPE 205
D+M +++ + +K + + F L ++P+S L+Y +FEG+KA++ +D ++ LFRP
Sbjct: 36 DHMLMVEWN-DKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKDQQVRLFRPW 94
Query: 206 QNALRMQMGADRLRMPSPTIEQFVDAVKHTVVANKQWVPPPGKGSLYIRPLLMGSGPVLG 265
N RM A RL +PS + ++ ++ + +K WVP SL +RP+L+G+ P LG
Sbjct: 95 LNMDRMLRSAMRLXLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLXVRPVLIGNEPSLG 154
Query: 266 ATPAPDYTFLAFASPVGNYHKG----YLNLVVEEKFYRAFPGGTGGVKAIVNYSTVFKPV 321
+ PVG Y G ++L+ + F RA+ GG G K NY
Sbjct: 155 VSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQ 214
Query: 322 AEAKAKGFSDVLFLDVKTAKYIEEVSTSNIFFLKGN-----VISTPATDGTILPGITRKS 376
EA +G VL+L + EV T NIF + + TP +G ILPG+ R+S
Sbjct: 215 QEALKRGCEQVLWL-YGPDHQLTEVGTMNIFVYWTHEDGVLELVTPPLNGVILPGVVRQS 273
Query: 377 VIEIAQILG-YQVEERAVAVEELFDS------EEVFCTGTAMVVNPVNSITYQGKRIEYK 429
++++AQ G ++V ER + +++L + EVF +GTA V PV+ I Y+ + +
Sbjct: 274 LLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHRILYKDRNLHIP 333
Query: 430 T---GPETV---AQKLYEMLVGIQT 448
T GPE + ++L E+ GI+
Sbjct: 334 TMENGPELILRFQKELKEIQYGIRA 358
>pdb|1A3G|A Chain A, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
pdb|1A3G|B Chain B, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
pdb|1A3G|C Chain C, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
Length = 308
Score = 125 bits (315), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 96/313 (30%), Positives = 161/313 (51%), Gaps = 27/313 (8%)
Query: 161 HGILTRFGRLEMNPSSGILNYGQGVFEGLKAYRTEDGRILLFRPEQNALRMQMGADRLRM 220
+G + R+ +++ S L+YG VFEG++ Y + G ++ FR ++ R+ A R
Sbjct: 11 NGEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGPVV-FRHREHMQRLHDSAKIYRF 69
Query: 221 P-SPTIEQFVDAVKHTVVANKQWVPPPGKGSLYIRPLLMGSGPVLGATPAPDYT--FLAF 277
P S +I++ ++A + + N S YIRPL+ +G P Y+ +
Sbjct: 70 PVSQSIDELMEACRDVIRKNNL-------TSAYIRPLIFVGDVGMGVNPPAGYSTDVIIA 122
Query: 278 ASPVGNY------HKGYLNLVVEEKFYRAFPGGT-GGVKAIVNYSTVFKPVAEAKAKGFS 330
A P G Y +G +V + RA P KA NY + +EA+ G+
Sbjct: 123 AFPWGAYLGAEALEQGIDAMV--SSWNRAAPNTIPTAAKAGGNYLSSLLVGSEARRHGYQ 180
Query: 331 DVLFLDVKTAKYIEEVSTSNIFFLKGNVISTPATDGTILPGITRKSVIEIAQILGYQVEE 390
+ + LDV YI E + N+F +K V+ TP + LPGITR ++I++A+ LG +V E
Sbjct: 181 EGIALDVN--GYISEGAGENLFEVKDGVLFTPPFTSSALPGITRDAIIKLAKELGIEVRE 238
Query: 391 RAVAVEELFDSEEVFCTGTAMVVNPVNSITYQGKRI-EYKTGPETVAQKLYEMLVGIQTG 449
+ ++ E L+ ++EVF +GTA + PV S+ G ++ E + GP V +++ + G+ TG
Sbjct: 239 QVLSRESLYLADEVFMSGTAAEITPVRSV--DGIQVGEGRCGP--VTKRIQQAFFGLFTG 294
Query: 450 RIEDKMGWTVELN 462
EDK GW ++N
Sbjct: 295 ETEDKWGWLDQVN 307
>pdb|1I1K|A Chain A, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1K|B Chain B, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1K|C Chain C, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1L|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1L|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1L|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|A Chain A, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|B Chain B, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|C Chain C, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1IYD|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYD|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYD|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
Length = 309
Score = 125 bits (315), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 96/313 (30%), Positives = 161/313 (51%), Gaps = 27/313 (8%)
Query: 161 HGILTRFGRLEMNPSSGILNYGQGVFEGLKAYRTEDGRILLFRPEQNALRMQMGADRLRM 220
+G + R+ +++ S L+YG VFEG++ Y + G ++ FR ++ R+ A R
Sbjct: 12 NGEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGPVV-FRHREHMQRLHDSAKIYRF 70
Query: 221 P-SPTIEQFVDAVKHTVVANKQWVPPPGKGSLYIRPLLMGSGPVLGATPAPDYT--FLAF 277
P S +I++ ++A + + N S YIRPL+ +G P Y+ +
Sbjct: 71 PVSQSIDELMEACRDVIRKNNL-------TSAYIRPLIFVGDVGMGVNPPAGYSTDVIIA 123
Query: 278 ASPVGNY------HKGYLNLVVEEKFYRAFPGGT-GGVKAIVNYSTVFKPVAEAKAKGFS 330
A P G Y +G +V + RA P KA NY + +EA+ G+
Sbjct: 124 AFPWGAYLGAEALEQGIDAMV--SSWNRAAPNTIPTAAKAGGNYLSSLLVGSEARRHGYQ 181
Query: 331 DVLFLDVKTAKYIEEVSTSNIFFLKGNVISTPATDGTILPGITRKSVIEIAQILGYQVEE 390
+ + LDV YI E + N+F +K V+ TP + LPGITR ++I++A+ LG +V E
Sbjct: 182 EGIALDVN--GYISEGAGENLFEVKDGVLFTPPFTSSALPGITRDAIIKLAKELGIEVRE 239
Query: 391 RAVAVEELFDSEEVFCTGTAMVVNPVNSITYQGKRI-EYKTGPETVAQKLYEMLVGIQTG 449
+ ++ E L+ ++EVF +GTA + PV S+ G ++ E + GP V +++ + G+ TG
Sbjct: 240 QVLSRESLYLADEVFMSGTAAEITPVRSV--DGIQVGEGRCGP--VTKRIQQAFFGLFTG 295
Query: 450 RIEDKMGWTVELN 462
EDK GW ++N
Sbjct: 296 ETEDKWGWLDQVN 308
>pdb|1WRV|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase
pdb|1WRV|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase
pdb|1WRV|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase
pdb|2EIY|A Chain A, Crystal Structure Of T.th.hb8 Branched-chain Amino Acid
Aminotransferase Complexed With 4-methylvaleric Acid
pdb|2EIY|B Chain B, Crystal Structure Of T.th.hb8 Branched-chain Amino Acid
Aminotransferase Complexed With 4-methylvaleric Acid
pdb|2EIY|C Chain C, Crystal Structure Of T.th.hb8 Branched-chain Amino Acid
Aminotransferase Complexed With 4-methylvaleric Acid
pdb|2EJ0|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|D Chain D, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|E Chain E, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ0|F Chain F, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase With Pyridoxamine 5'-Phosphate
pdb|2EJ2|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|D Chain D, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|E Chain E, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ2|F Chain F, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With
N-(5'-Phosphopyridoxyl)-L-Glutamate
pdb|2EJ3|A Chain A, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With Gabapentin
pdb|2EJ3|B Chain B, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With Gabapentin
pdb|2EJ3|C Chain C, Crystal Structure Of T.Th.Hb8 Branched-Chain Amino Acid
Aminotransferase Complexed With Gabapentin
Length = 308
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 104/301 (34%), Positives = 144/301 (47%), Gaps = 34/301 (11%)
Query: 176 SGILNYGQGVFEGLKAYRTEDGRILLFRPEQNALRMQMGADRLRMPSP-TIEQFVDAVKH 234
S L+YG VFEG++AY T G + FR +++ R A LRM P E+ +A+K
Sbjct: 26 SHALHYGTSVFEGIRAYETAKGPAI-FRLKEHVKRFYNSAKVLRMEIPFAPEELEEAIKE 84
Query: 235 TVVANKQWVPPPGKGSLYIRPLLMGSGPVLGATPAPD--YTFLAFASPVGNY------HK 286
V N G S YIRPL LG P P+ + A G Y K
Sbjct: 85 VVRRN-------GYRSCYIRPLAWMGAKALGVNPLPNNPAEVMVAAWEWGAYLGEEAVRK 137
Query: 287 GYLNLVVEEKFYRAFPGGT--GGVKAIVNYSTVFKPVAEAKAKGFSDVLFLDVKTAKYIE 344
G ++ + R FP G K NY EA A G + L LD + Y+
Sbjct: 138 G--ARLITSSWAR-FPANVMPGKAKVGGNYVNSALAKMEAVAAGADEALLLDEEG--YVA 192
Query: 345 EVSTSNIFFLKGNVISTPATDGTI-LPGITRKSVIEIAQILGYQVEERAVAVEELFDSEE 403
E S N+FF++ VI A + ++ L GITR SVI IA+ LGY+V+ ++L+ ++E
Sbjct: 193 EGSGENLFFVRDGVIY--ALEHSVNLEGITRDSVIRIAKDLGYEVQVVRATRDQLYMADE 250
Query: 404 VFCTGTAMVVNPVNSITYQ--GKRIEYKTGPETVAQKLYEMLVGIQTGRIEDKMGWTVEL 461
VF TGTA V PV+ I ++ GK GP VA +L E+ + TGR + GW +
Sbjct: 251 VFMTGTAAEVTPVSMIDWRPIGKG---TAGP--VALRLREVYLEAVTGRRPEYEGWLTYV 305
Query: 462 N 462
N
Sbjct: 306 N 306
>pdb|3U0G|A Chain A, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|B Chain B, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|C Chain C, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|D Chain D, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|E Chain E, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
pdb|3U0G|F Chain F, Crystal Structure Of Branched-Chain Amino Acid
Aminotransferase From Burkholderia Pseudomallei
Length = 328
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/276 (28%), Positives = 130/276 (47%), Gaps = 29/276 (10%)
Query: 157 KNFSHGILTRFGRLEMNPSSGILNYGQGVFEGLKAYRTEDGRILLFRPEQNALRMQMGAD 216
K + G L + +++ + L+YG GVFEG++AY+T DG +FR +++ R+ A
Sbjct: 30 KIWMDGKLIEWRDAKIHVLTHTLHYGMGVFEGVRAYKTADGGTAIFRLKEHTKRLLNSAK 89
Query: 217 RLRMPSPTIEQFVDAVKHTVVANKQWVPPPGKGSLYIRPLLMGSGPVLGATPAPDYTFLA 276
+M P ++ ++A + VV + S Y+RP++ LG + + +A
Sbjct: 90 IFQMDVPFDQETLEAAQRDVVRENK------LESCYLRPIIWIGSEKLGVSAKGNTIHVA 143
Query: 277 FAS-PVGNYHKGYLNLVVEEKFYRAFPGGTGG-VKAIVNYSTVFKPVA-----------E 323
A+ P G Y + EE + T + VN S V + E
Sbjct: 144 IAAWPWGAY-------LGEEGLAKGIRVKTSSFTRHHVNVSMVRAKASGWYVNSILANQE 196
Query: 324 AKAKGFSDVLFLDVKTAKYIEEVSTSNIFFLKGNVISTPATDGTILPGITRKSVIEIAQI 383
A A G+ + L LDV Y+ E S N F + + TP + L GITR +VI +A+
Sbjct: 197 ATADGYDEALLLDVD--GYVSEGSGENFFLVNRGKLYTPDL-ASCLDGITRDTVITLAKE 253
Query: 384 LGYQVEERAVAVEELFDSEEVFCTGTAMVVNPVNSI 419
G +V E+ + +E++ ++E F TGTA V P+ +
Sbjct: 254 AGIEVIEKRITRDEVYTADEAFFTGTAAEVTPIREL 289
>pdb|3CSW|A Chain A, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
pdb|3CSW|B Chain B, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
pdb|3CSW|C Chain C, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
pdb|3CSW|D Chain D, Crystal Structure Of A Putative Branched-Chain Amino Acid
Aminotransferase (Tm0831) From Thermotoga Maritima At
2.15 A Resolution
Length = 285
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/90 (43%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Query: 345 EVSTSNIFFLKGNVISTPATDGTILPGITRKSVIEIAQILGYQVEERAVAVEELFDSEEV 404
E S SN+F +K + TP+ D IL GITR++VI++A+ L VEER V V ELF+++E
Sbjct: 176 EGSFSNVFLVKEGKLITPSLDSGILDGITRENVIKLAKSLEIPVEERVVWVWELFEADEX 235
Query: 405 FCTGTAMVVNPVNSITYQGKRIEYKTGPET 434
F T T+ V PV + + E + GP T
Sbjct: 236 FLTHTSAGVVPVRRLN-EHSFFEEEPGPVT 264
>pdb|3SNO|A Chain A, Crystal Structure Of A Hypothetical Aminotransferase
(Ncgl2491) From Corynebacterium Glutamicum Atcc 13032
Kitasato At 1.60 A Resolution
Length = 315
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 56/102 (54%), Gaps = 5/102 (4%)
Query: 325 KAKGFSDVLFLDVKTAKYIEEVSTSNIFFLKGNVISTPATDGTILPGITRKSVIEIAQIL 384
K+ GF DV+F D + E +TS + KG+ I TP+ G ILPG T+ ++ A
Sbjct: 201 KSNGFDDVIFTD---GDRVLEGATSTVVSFKGDKIRTPSPGGDILPGTTQAALFAHATEK 257
Query: 385 GYQVEERAVAVEELFDSEEVFCTGTAMVVNPVNSITYQGKRI 426
G++ +E+ +++++LF ++ V+ + V PV G ++
Sbjct: 258 GWRCKEKDLSIDDLFGADSVWL--VSSVRGPVRVTRLDGHKL 297
>pdb|3LUL|A Chain A, Crystal Structure Of Putative 4-Amino-4-Deoxychorismate
Lyase. (Yp_094631.1) From Legionella Pneumophila Subsp.
Pneumophila Str. Philadelphia 1 At 1.78 A Resolution
pdb|3LUL|B Chain B, Crystal Structure Of Putative 4-Amino-4-Deoxychorismate
Lyase. (Yp_094631.1) From Legionella Pneumophila Subsp.
Pneumophila Str. Philadelphia 1 At 1.78 A Resolution
Length = 272
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 2/108 (1%)
Query: 312 VNYSTVFKPVAEAKAKGFSDVLFLDVKTAKYIEEVSTSNIFFLKGNVISTPATDGTILPG 371
VNY +A A G D LF + T ++ E + +N+F ++ N++ TP + ILPG
Sbjct: 143 VNYLEAIIAQRQAIAVGADDALFFN--TENHVTETTCANLFLIENNILYTPRVEDGILPG 200
Query: 372 ITRKSVIEIAQILGYQVEERAVAVEELFDSEEVFCTGTAMVVNPVNSI 419
ITR +I Q V+E ++ + + D++ VF T + + V S+
Sbjct: 201 ITRARLISHCQQHKXSVQEISLTKKRIEDADAVFLTNSLQGIRRVLSL 248
>pdb|1DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Complexed With Pyridoxal-5'-Phosphate
pdb|1DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Complexed With Pyridoxal-5'-Phosphate
pdb|2DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By D-Cycloserine
pdb|2DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By D-Cycloserine
Length = 282
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 107/255 (41%), Gaps = 33/255 (12%)
Query: 181 YGQGVFEGLKAYRTEDGRILLFRPEQNALRMQMGADRLRMPSPTIEQFVDAVKHTVVANK 240
+G GV+E +K Y E +F ++ R+ A+++R+ P + + H +V
Sbjct: 26 FGDGVYEVVKVYNGE-----MFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEKN 80
Query: 241 QWVPPPGKGSLYIRPLLMGSGPVLGATPAPDYT----FLAFAS----PVGNYHKGYLNLV 292
+ G +Y + + G+ P A P+ T + + P+ N KG
Sbjct: 81 EL----NTGHIYFQ-VTRGTSP--RAHQFPENTVKPVIIGYTKENPRPLENLEKGVKATF 133
Query: 293 VEE-KFYRAFPGGTGGVKAIVNYSTVFKPVAEAKAKGFSDVLFLDVKTAKYIEEVSTSNI 351
VE+ ++ R +K++ V EA KG + + T + E S+SN+
Sbjct: 134 VEDIRWLRC------DIKSLNLLGAVLAK-QEAHEKGCYEAILHRNNT---VTEGSSSNV 183
Query: 352 FFLKGNVISTPATDGTILPGITRKSVIEIAQILGYQVEERAVAVEELFDSEEVFCTGTAM 411
F +K ++ T + IL GITR VI A + V+E E +E+F T T
Sbjct: 184 FGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFVTSTTS 243
Query: 412 VVNPVNSITYQGKRI 426
+ PV I GK I
Sbjct: 244 EITPV--IEIDGKLI 256
>pdb|3LQS|A Chain A, Complex Structure Of D-Amino Acid Aminotransferase And
4-Amino-4,5- Dihydro-Thiophenecarboxylic Acid (Adta)
pdb|3LQS|B Chain B, Complex Structure Of D-Amino Acid Aminotransferase And
4-Amino-4,5- Dihydro-Thiophenecarboxylic Acid (Adta)
Length = 280
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 107/255 (41%), Gaps = 33/255 (12%)
Query: 181 YGQGVFEGLKAYRTEDGRILLFRPEQNALRMQMGADRLRMPSPTIEQFVDAVKHTVVANK 240
+G GV+E +K Y E +F ++ R+ A+++R+ P + + H +V
Sbjct: 26 FGDGVYEVVKVYNGE-----MFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEKN 80
Query: 241 QWVPPPGKGSLYIRPLLMGSGPVLGATPAPDYT----FLAFAS----PVGNYHKGYLNLV 292
+ G +Y + + G+ P A P+ T + + P+ N KG
Sbjct: 81 EL----NTGHIYFQ-VTRGTSP--RAHQFPENTVKPVIIGYTKENPRPLENLEKGVKATF 133
Query: 293 VEE-KFYRAFPGGTGGVKAIVNYSTVFKPVAEAKAKGFSDVLFLDVKTAKYIEEVSTSNI 351
VE+ ++ R +K++ V EA KG + + T + E S+SN+
Sbjct: 134 VEDIRWLRC------DIKSLNLLGAVLAK-QEAHEKGCYEAILHRNNT---VTEGSSSNV 183
Query: 352 FFLKGNVISTPATDGTILPGITRKSVIEIAQILGYQVEERAVAVEELFDSEEVFCTGTAM 411
F +K ++ T + IL GITR VI A + V+E E +E+F T T
Sbjct: 184 FGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFVTSTTS 243
Query: 412 VVNPVNSITYQGKRI 426
+ PV I GK I
Sbjct: 244 EITPV--IEIDGKLI 256
>pdb|3DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By Pyridoxyl-D-Alanine
pdb|3DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase Inactivated By Pyridoxyl-D-Alanine
pdb|4DAA|A Chain A, Crystallographic Structure Of D-Amino Acid
Aminotransferase In Pyridoxal-5'-Phosphate (Plp) Form
pdb|4DAA|B Chain B, Crystallographic Structure Of D-Amino Acid
Aminotransferase In Pyridoxal-5'-Phosphate (Plp) Form
Length = 277
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 64/255 (25%), Positives = 107/255 (41%), Gaps = 33/255 (12%)
Query: 181 YGQGVFEGLKAYRTEDGRILLFRPEQNALRMQMGADRLRMPSPTIEQFVDAVKHTVVANK 240
+G GV+E +K Y E +F ++ R+ A+++R+ P + + H +V
Sbjct: 26 FGDGVYEVVKVYNGE-----MFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEKN 80
Query: 241 QWVPPPGKGSLYIRPLLMGSGPVLGATPAPDYT----FLAFAS----PVGNYHKGYLNLV 292
+ G +Y + + G+ P A P+ T + + P+ N KG
Sbjct: 81 EL----NTGHIYFQ-VTRGTSP--RAHQFPENTVKPVIIGYTKENPRPLENLEKGVKATF 133
Query: 293 VEE-KFYRAFPGGTGGVKAIVNYSTVFKPVAEAKAKGFSDVLFLDVKTAKYIEEVSTSNI 351
VE+ ++ R +K++ V EA KG + + T + E S+SN+
Sbjct: 134 VEDIRWLRC------DIKSLNLLGAVLAK-QEAHEKGCYEAILHRNNT---VTEGSSSNV 183
Query: 352 FFLKGNVISTPATDGTILPGITRKSVIEIAQILGYQVEERAVAVEELFDSEEVFCTGTAM 411
F +K ++ T + IL GITR VI A + V+E E +E+F T T
Sbjct: 184 FGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFVTSTTS 243
Query: 412 VVNPVNSITYQGKRI 426
+ PV I GK I
Sbjct: 244 EITPV--IEIDGKLI 256
>pdb|5DAA|A Chain A, E177k Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|5DAA|B Chain B, E177k Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
Length = 277
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 107/255 (41%), Gaps = 33/255 (12%)
Query: 181 YGQGVFEGLKAYRTEDGRILLFRPEQNALRMQMGADRLRMPSPTIEQFVDAVKHTVVANK 240
+G GV+E +K Y E +F ++ R+ A+++R+ P + + H +V
Sbjct: 26 FGDGVYEVVKVYNGE-----MFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEKN 80
Query: 241 QWVPPPGKGSLYIRPLLMGSGPVLGATPAPDYT----FLAFAS----PVGNYHKGYLNLV 292
+ G +Y + + G+ P A P+ T + + P+ N KG
Sbjct: 81 EL----NTGHIYFQ-VTRGTSP--RAHQFPENTVKPVIIGYTKENPRPLENLEKGVKATF 133
Query: 293 VEE-KFYRAFPGGTGGVKAIVNYSTVFKPVAEAKAKGFSDVLFLDVKTAKYIEEVSTSNI 351
VE+ ++ R +K++ V EA KG + + T + + S+SN+
Sbjct: 134 VEDIRWLRC------DIKSLNLLGAVLAK-QEAHEKGCYEAILHRNNT---VTKGSSSNV 183
Query: 352 FFLKGNVISTPATDGTILPGITRKSVIEIAQILGYQVEERAVAVEELFDSEEVFCTGTAM 411
F +K ++ T + IL GITR VI A + V+E E +E+F T T
Sbjct: 184 FGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFVTSTTS 243
Query: 412 VVNPVNSITYQGKRI 426
+ PV I GK I
Sbjct: 244 EITPV--IEIDGKLI 256
>pdb|1G2W|A Chain A, E177s Mutant Of The Pyridoxal-5'-phosphate Enzyme D-amino
Acid Aminotransferase
pdb|1G2W|B Chain B, E177s Mutant Of The Pyridoxal-5'-phosphate Enzyme D-amino
Acid Aminotransferase
Length = 282
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 106/255 (41%), Gaps = 33/255 (12%)
Query: 181 YGQGVFEGLKAYRTEDGRILLFRPEQNALRMQMGADRLRMPSPTIEQFVDAVKHTVVANK 240
+G GV+E +K Y E +F ++ R+ A+++R+ P + + H +V
Sbjct: 26 FGDGVYEVVKVYNGE-----MFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEKN 80
Query: 241 QWVPPPGKGSLYIRPLLMGSGPVLGATPAPDYT----FLAFAS----PVGNYHKGYLNLV 292
+ G +Y + + G+ P A P+ T + + P+ N KG
Sbjct: 81 EL----NTGHIYFQ-VTRGTSP--RAHQFPENTVKPVIIGYTKENPRPLENLEKGVKATF 133
Query: 293 VEE-KFYRAFPGGTGGVKAIVNYSTVFKPVAEAKAKGFSDVLFLDVKTAKYIEEVSTSNI 351
VE+ ++ R +K++ V EA KG + + T + S+SN+
Sbjct: 134 VEDIRWLRC------DIKSLNLLGAVLAK-QEAHEKGCYEAILHRNNT---VTSGSSSNV 183
Query: 352 FFLKGNVISTPATDGTILPGITRKSVIEIAQILGYQVEERAVAVEELFDSEEVFCTGTAM 411
F +K ++ T + IL GITR VI A + V+E E +E+F T T
Sbjct: 184 FGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFVTSTTS 243
Query: 412 VVNPVNSITYQGKRI 426
+ PV I GK I
Sbjct: 244 EITPV--IEIDGKLI 256
>pdb|1A0G|A Chain A, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|1A0G|B Chain B, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxamine-5'-Phosphate
pdb|2DAB|A Chain A, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxal-5'-Phosphate
pdb|2DAB|B Chain B, L201a Mutant Of D-Amino Acid Aminotransferase Complexed
With Pyridoxal-5'-Phosphate
Length = 282
Score = 51.6 bits (122), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 106/255 (41%), Gaps = 33/255 (12%)
Query: 181 YGQGVFEGLKAYRTEDGRILLFRPEQNALRMQMGADRLRMPSPTIEQFVDAVKHTVVANK 240
+G GV+E +K Y E +F ++ R+ A+++R+ P + + H +V
Sbjct: 26 FGDGVYEVVKVYNGE-----MFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVEKN 80
Query: 241 QWVPPPGKGSLYIRPLLMGSGPVLGATPAPDYT----FLAFAS----PVGNYHKGYLNLV 292
+ G +Y + + G+ P A P+ T + + P+ N KG
Sbjct: 81 EL----NTGHIYFQ-VTRGTSP--RAHQFPENTVKPVIIGYTKENPRPLENLEKGVKATF 133
Query: 293 VEE-KFYRAFPGGTGGVKAIVNYSTVFKPVAEAKAKGFSDVLFLDVKTAKYIEEVSTSNI 351
VE+ ++ R +K++ V EA KG + + T + E S+SN+
Sbjct: 134 VEDIRWLRC------DIKSLNLLGAVLAK-QEAHEKGCYEAILHRNNT---VTEGSSSNV 183
Query: 352 FFLKGNVISTPATDGTILPGITRKSVIEIAQILGYQVEERAVAVEELFDSEEVFCTGTAM 411
F +K ++ T + I GITR VI A + V+E E +E+F T T
Sbjct: 184 FGIKDGILYTHPANNMIAKGITRDVVIACANEINMPVKEIPFTTHEALKMDELFVTSTTS 243
Query: 412 VVNPVNSITYQGKRI 426
+ PV I GK I
Sbjct: 244 EITPV--IEIDGKLI 256
>pdb|1ET0|A Chain A, Crystal Structure Of Aminodeoxychorismate Lyase From
Escherichia Coli
pdb|1I2K|A Chain A, Aminodeoxychorismate Lyase From Escherichia Coli
pdb|1I2L|A Chain A, Deoxychorismate Lyase From Escherichia Coli With Inhibitor
Length = 269
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 331 DVLFLDVKTAKYIEEVSTSNIFFLKGNVISTPATDGTILPGITRKSVIEIAQILGYQVEE 390
+ L LD + ++ E +N+F+ KGNV+ TP D + GI R+ I + YQ+ E
Sbjct: 161 EALVLD--SEGWVTECCAANLFWRKGNVVYTPRLDQAGVNGIMRQFCIRLLAQSSYQLVE 218
Query: 391 RAVAVEELFDSEEVFCTGTAMVVNPV 416
++EE ++E+ M V PV
Sbjct: 219 VQASLEESLQADEMVICNALMPVMPV 244
>pdb|2Y4R|A Chain A, Crystal Structure Of 4-Amino-4-Deoxychorismate Lyase From
Pseudomonas Aeruginosa
pdb|2Y4R|B Chain B, Crystal Structure Of 4-Amino-4-Deoxychorismate Lyase From
Pseudomonas Aeruginosa
Length = 292
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 106/254 (41%), Gaps = 39/254 (15%)
Query: 179 LNYGQGVFEGLKAYRTEDGRILLFRPEQNALRMQMGADRLRMPSPT----------IEQF 228
L YG G+FE L A R R+L E++ R++ G RL +P T
Sbjct: 41 LAYGDGLFETL-AVRAGTPRLL----ERHLARLEEGCRRLAIPLDTAALRQELLAFCAAL 95
Query: 229 VDAVKHTVVANKQWV---PPPGKGSLYIRPLLMGSGPVLGATPAPDYTFLAFASPVGNYH 285
D V +V + + PP + S R +L GS P P Y P ++
Sbjct: 96 GDGVAKLIVTRGEGLRGYAPPAEAS--PRRILSGS-------PRPAY-------PERHWQ 139
Query: 286 KGYLNLVVEEKFYRAFPGGTGGVKAIVNYSTVFKPVAEAKAKGFSDVLFLDVKTAKYIEE 345
+G + A G+K + V AE G ++ L LDV + +E
Sbjct: 140 QGVRLFACRTRL--AEQPLLAGLKHLNRLEQVLAR-AEWSDAGHAEGLMLDVHE-RVVEG 195
Query: 346 VSTSNIFFLKGNVISTPATDGTILPGITRKSVIEIAQILGYQVEERAVAVEELFDSEEVF 405
V ++ + L G +++ P + G+ R ++E A+ +G + R V++ EL ++EVF
Sbjct: 196 VFSNLLLVLDGTLVA-PDLRRCGVAGVMRAELLERAEGIGVPLAIRDVSMAELATADEVF 254
Query: 406 CTGTAMVVNPVNSI 419
+ + PV ++
Sbjct: 255 LCNSQFGIWPVRAL 268
>pdb|2WJZ|B Chain B, Crystal Structure Of (Hish) K181a Y138a Mutant Of
Imidazoleglycerolphosphate Synthase (Hish Hisf) Which
Displays Constitutive Glutaminase Activity
pdb|2WJZ|D Chain D, Crystal Structure Of (Hish) K181a Y138a Mutant Of
Imidazoleglycerolphosphate Synthase (Hish Hisf) Which
Displays Constitutive Glutaminase Activity
pdb|2WJZ|F Chain F, Crystal Structure Of (Hish) K181a Y138a Mutant Of
Imidazoleglycerolphosphate Synthase (Hish Hisf) Which
Displays Constitutive Glutaminase Activity
Length = 201
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 328 GFSDVLFLDVKTAKYIEEVSTSNIFFLKGNVISTPATDGTILPGITRKSVIEIAQILGYQ 387
G+++V+F D Y V T + +V+ T DG I P RK +ILG+Q
Sbjct: 122 GWNEVIFKDTFPNGYYAFVHTYRAVCEEEHVLGTTEYDGEIFPSAVRK-----GRILGFQ 176
Query: 388 VEERA 392
A
Sbjct: 177 FHPEA 181
>pdb|1KXJ|A Chain A, The Crystal Structure Of Glutamine Amidotransferase From
Thermotoga Maritima
pdb|1KXJ|B Chain B, The Crystal Structure Of Glutamine Amidotransferase From
Thermotoga Maritima
Length = 205
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 328 GFSDVLFLDVKTAKYIEEVSTSNIFFLKGNVISTPATDGTILPGITRKSVIEIAQILGYQ 387
G+++V+F D Y V T + +V+ T DG I P RK +ILG+Q
Sbjct: 124 GWNEVIFKDTFPNGYYYFVHTYRAVCEEEHVLGTTEYDGEIFPSAVRK-----GRILGFQ 178
>pdb|2QK4|A Chain A, Human Glycinamide Ribonucleotide Synthetase
pdb|2QK4|B Chain B, Human Glycinamide Ribonucleotide Synthetase
Length = 452
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 375 KSVIEIAQILGYQVEERAVAVEELFDSEEV--FCTGTAMVVNPVNSITYQGKRIEYKTGP 432
K+V EI Q + + +EEL D EEV C V P+ + +E GP
Sbjct: 191 KAVQEIMQEKAFGAAGETIVIEELLDGEEVSCLCFTDGKTVAPMPPAQDHKRLLEGDGGP 250
Query: 433 ETVAQKLY 440
T Y
Sbjct: 251 NTGGMGAY 258
>pdb|1GPW|B Chain B, Structural Evidence For Ammonia Tunneling Across The
(BetaALPHA)8 BARREL OF THE IMIDAZOLE GLYCEROL PHOSPHATE
Synthase Bienzyme Complex.
pdb|1GPW|D Chain D, Structural Evidence For Ammonia Tunneling Across The
(BetaALPHA)8 BARREL OF THE IMIDAZOLE GLYCEROL PHOSPHATE
Synthase Bienzyme Complex.
pdb|1GPW|F Chain F, Structural Evidence For Ammonia Tunneling Across The
(BetaALPHA)8 BARREL OF THE IMIDAZOLE GLYCEROL PHOSPHATE
Synthase Bienzyme Complex.
pdb|1K9V|F Chain F, Structural Evidence For Ammonia Tunelling Across The
(Beta- Alpha)8-Barrel Of The Imidazole Glycerol
Phosphate Synthase Bienzyme Complex
pdb|3ZR4|B Chain B, Structural Evidence For Ammonia Tunneling Across The
(Beta- Alpha)8 Barrel Of The Imidazole Glycerol
Phosphate Synthase Bienzyme Complex
pdb|3ZR4|D Chain D, Structural Evidence For Ammonia Tunneling Across The
(Beta- Alpha)8 Barrel Of The Imidazole Glycerol
Phosphate Synthase Bienzyme Complex
pdb|3ZR4|F Chain F, Structural Evidence For Ammonia Tunneling Across The
(Beta- Alpha)8 Barrel Of The Imidazole Glycerol
Phosphate Synthase Bienzyme Complex
Length = 201
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 328 GFSDVLFLDVKTAKYIEEVSTSNIFFLKGNVISTPATDGTILPGITRKSVIEIAQILGYQ 387
G+++V+F D Y V T + +V+ T DG I P RK +ILG+Q
Sbjct: 122 GWNEVIFKDTFPNGYYYFVHTYRAVCEEEHVLGTTEYDGEIFPSAVRK-----GRILGFQ 176
>pdb|3LM6|A Chain A, Crystal Structure Of Stage V Sporulation Protein Ad
(Spovad) From Bacillus Subtilis, Northeast Structural
Genomics Consortium Target Sr525
pdb|3LM6|B Chain B, Crystal Structure Of Stage V Sporulation Protein Ad
(Spovad) From Bacillus Subtilis, Northeast Structural
Genomics Consortium Target Sr525
Length = 346
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 280 PVGNYHKGYLNLVVEEKFYRAFPGGTG-GVKAIVNYSTVFKPVAEAK 325
PVG H L++ + F GG+G A+V YS +FK + E K
Sbjct: 253 PVGTKHDD-CGLLIYTPDQQVFAGGSGCACSAVVTYSHIFKQLREGK 298
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,358,737
Number of Sequences: 62578
Number of extensions: 622503
Number of successful extensions: 1503
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1415
Number of HSP's gapped (non-prelim): 37
length of query: 462
length of database: 14,973,337
effective HSP length: 102
effective length of query: 360
effective length of database: 8,590,381
effective search space: 3092537160
effective search space used: 3092537160
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)