Query 012487
Match_columns 462
No_of_seqs 263 out of 2004
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 10:24:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012487.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012487hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dth_A Branched-chain amino ac 100.0 2.6E-84 8.8E-89 667.3 36.1 337 126-462 21-372 (372)
2 3dtg_A Branched-chain amino ac 100.0 2.6E-84 8.9E-89 668.3 35.8 340 122-462 18-372 (372)
3 3uzo_A Branched-chain-amino-ac 100.0 2.3E-80 7.9E-85 635.6 32.2 334 125-461 16-358 (358)
4 4dqn_A Putative branched-chain 100.0 1.2E-78 4.2E-83 620.3 36.3 330 131-462 7-344 (345)
5 2coi_A Branched chain aminotra 100.0 2.3E-78 8E-83 626.5 38.0 331 129-462 38-386 (386)
6 2a1h_A Branched chain aminotra 100.0 2E-75 6.9E-80 600.8 37.1 328 130-461 19-365 (365)
7 3u0g_A Putative branched-chain 100.0 8E-65 2.7E-69 515.2 31.3 294 154-461 27-328 (328)
8 1iye_A Branched-chain amino ac 100.0 3.1E-61 1E-65 483.9 32.4 292 156-461 7-307 (309)
9 2eiy_A ILVE, branched-chain am 100.0 6.9E-61 2.4E-65 481.4 32.6 292 156-462 6-306 (308)
10 3daa_A D-amino acid aminotrans 100.0 2.5E-55 8.4E-60 435.7 31.7 267 157-446 2-275 (277)
11 1i2k_A 4-amino-4-deoxychorisma 100.0 1.1E-53 3.6E-58 421.3 30.1 260 158-445 2-267 (269)
12 2xpf_A 4-amino-4-deoxychorisma 100.0 3.2E-53 1.1E-57 423.4 30.0 260 157-445 23-288 (292)
13 3lul_A 4-amino-4-deoxychorisma 100.0 1.4E-52 4.9E-57 414.8 30.5 260 158-448 6-268 (272)
14 3sno_A Hypothetical aminotrans 100.0 3.4E-52 1.2E-56 420.3 26.0 265 158-445 17-312 (315)
15 3csw_A BCAT, putative branched 100.0 1.6E-52 5.6E-57 416.9 23.0 271 147-458 10-283 (285)
16 2zgi_A Putative 4-amino-4-deox 100.0 2.4E-46 8.2E-51 364.7 20.5 226 158-419 2-228 (246)
17 3qqm_A MLR3007 protein; struct 100.0 1E-41 3.5E-46 327.6 21.8 206 180-418 13-220 (221)
18 3ceb_A D-aminoacid aminotransf 100.0 5.9E-38 2E-42 294.9 19.6 189 180-413 2-194 (194)
19 4g5a_A Uncharacterized protein 21.2 30 0.001 27.5 1.0 35 50-85 6-40 (99)
No 1
>3dth_A Branched-chain amino acid aminotransferase; open twisted alpha/beta; HET: PLP OBZ; 1.85A {Mycobacterium smegmatis} PDB: 3dtf_A* 3dtg_A* 3jz6_A* 3ht5_A*
Probab=100.00 E-value=2.6e-84 Score=667.34 Aligned_cols=337 Identities=36% Similarity=0.668 Sum_probs=318.1
Q ss_pred ChhhccCCCCCCCCccceeeCceEEEEEccCceeecCeeccCCcceeCCCCccccccceEEEEEEEEEeCCCeEeecChH
Q 012487 126 VVEEYANLKWDELGFCLIPVDYMYVMKCSKEKNFSHGILTRFGRLEMNPSSGILNYGQGVFEGLKAYRTEDGRILLFRPE 205 (462)
Q Consensus 126 ~~~~~~~~d~~~l~fg~~~tdhm~~~~~~~~~~W~ng~ivp~~~~~l~~~d~~l~YG~gvFEgmkay~~~dG~i~lFr~d 205 (462)
..+...++||++||||++|||||++++|+++++|.||+|+|++++.|+|+|++||||||||||||+|+++||+|++|||+
T Consensus 21 ~~~~~~~~~~~~l~fg~~~td~m~~~~~~~~~~W~~g~i~p~~~~~i~~~d~gl~yGdgvFEglkay~~~dG~i~lFrl~ 100 (372)
T 3dth_A 21 ATDAVRESILANPGFGKYYTDHMVSIDYTVDEGWHNAQVIPYGPIQLDPSAIVLHYGQEIFEGLKAYRWADGSIVSFRPE 100 (372)
T ss_dssp CCHHHHHHHHHSCCSSSCCCSEEEEEEEETTTEEEEEEEEESCCEEECTTCTHHHHCCEEECCEEEEECTTSCEEEESHH
T ss_pred CCchhcccchhccCCCCccCCceEEEEEcCCCeEECCcEeehHhcccCccccHhhcCcEEEEEEEEEECCCCcEeecCHH
Confidence 33445568999999999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCcCCCC-CCcceEEEEEEeccCCcccccCCCCcEEEEEEeccCCC
Q 012487 206 QNALRMQMGADRLRMPSPTIEQFVDAVKHTVVANKQWVPPP-GKGSLYIRPLLMGSGPVLGATPAPDYTFLAFASPVGNY 284 (462)
Q Consensus 206 ~Hl~RL~~SA~~L~mp~~~~e~l~~~I~~lv~~n~~~vP~~-~~g~lyIRp~~~g~~~~lGv~p~~~~~~~I~~~P~~~y 284 (462)
+|++||++||++|+||.++.++|.++|+++++.|..|||+. .++++||||+++++++.+|+.|+.+++++|+++|+++|
T Consensus 101 ~H~~RL~~Sa~~L~mp~~~~e~l~~~i~~lv~~n~~~vp~~~~~~~lYiRp~~~~~~~~~G~~p~~~~~~~i~~~p~~~y 180 (372)
T 3dth_A 101 ANAARLQSSARRLAIPELPEEVFIESLRQLIAVDEKWVPPAGGEESLYLRPFVIATEPGLGVRPSNEYRYLLIASPAGAY 180 (372)
T ss_dssp HHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHGGGSCCSSSSCEEEEEEEEEECCCCSSCSCCSEEEEEEEEEEESCS
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccccCCCCCCCCcEEEEEEEEcCCCcCCcCCCCCeEEEEEEeeCchh
Confidence 99999999999999997899999999999999999999986 45689999999998888999998889999999999999
Q ss_pred CC---CceeEEEeeeeeecCCCCCCCCCcccccccchHHHHHHHHCCCCeEEEEeccCCCEEEeeCceeEEEEeCC----
Q 012487 285 HK---GYLNLVVEEKFYRAFPGGTGGVKAIVNYSTVFKPVAEAKAKGFSDVLFLDVKTAKYIEEVSTSNIFFLKGN---- 357 (462)
Q Consensus 285 ~~---~~v~l~i~~~~~Ra~p~g~g~~Kt~gNYa~~l~a~~eA~~~G~ddvL~LD~~~~g~V~E~stsNiF~v~~~---- 357 (462)
|+ +|+++++++++.|++|++++.+|+++||+++++++++|+++||||+||||..++|+|+|+++||||+++++
T Consensus 181 ~~~g~~~v~l~v~~~~~R~~p~g~~~~K~~gNY~~~~la~~eA~~~G~de~l~ld~~~~g~v~E~~~sNif~v~~~~~g~ 260 (372)
T 3dth_A 181 FKGGIKPVSVWLSHEYVRASPGGTGAAKFGGNYAASLLAQAQAAEMGCDQVVWLDAIERRYVEEMGGMNLFFVFGSGGSA 260 (372)
T ss_dssp SSCSSSCEEEEECSSCCSCCTTSSTTSCCHHHHHTTHHHHHHHHHTTCSEEEEECTTTSCBEEEETTEEEEEEESCGGGC
T ss_pred hccCCccEEEEEccceeccCCCcccchhhHhhhHHHHHHHHHHHHcCCCEEEEEcCCCCCEEEEcCceeEEEEECCCCce
Confidence 86 68999998889999999999999988999999999999999999999999766899999999999999998
Q ss_pred EEEccCCCCCCccchHHHHHHHHHHHcCCcEEEEEeChhhhhcc------ceeEEEecccceEEeEEEEECCeEEEcC-C
Q 012487 358 VISTPATDGTILPGITRKSVIEIAQILGYQVEERAVAVEELFDS------EEVFCTGTAMVVNPVNSITYQGKRIEYK-T 430 (462)
Q Consensus 358 ~liTPpLs~~ILpGITR~siLela~~~G~~V~Er~I~~~eL~~a------dEvF~tgTa~gI~PV~~I~~~~~~i~~~-~ 430 (462)
+|+||+++++||+||||++||++|+++|++|+|++|+++||.+| +|+|+|||+++|+||.+|++.++.+.++ +
T Consensus 261 ~l~TP~l~~~iL~GITR~~vl~la~~~G~~v~Er~i~~~eL~~a~~~g~~dEvf~tgTa~~i~PV~~Id~~~~~~~i~~g 340 (372)
T 3dth_A 261 RLVTPELSGSLLPGITRDSLLQLATDAGFAVEERKIDVDEWQKKAGAGEITEVFACGTAAVITPVSHVKHHDGEFTIADG 340 (372)
T ss_dssp EEEECCCCSSSCCCHHHHHHHHHHHHHTCEEEECCCBHHHHHHHHHHTSEEEEEEEETTTEEEEEEEEEETTEEEECTTS
T ss_pred EEEECCCCCCcCHHHHHHHHHHHHHHCCCeEEEEECCHHHHHhhhhcCCccEEEEecccceEEEEEEEccCCceEECCCC
Confidence 99999999999999999999999999999999999999999998 9999999999999999998877776664 4
Q ss_pred CchHHHHHHHHHHHHhhccCCCCCCCCeEECC
Q 012487 431 GPETVAQKLYEMLVGIQTGRIEDKMGWTVELN 462 (462)
Q Consensus 431 ~~gp~t~~L~~~l~~iq~G~~~d~~gW~~~v~ 462 (462)
.+||+|++|+++|.+||+|+++|++||+++||
T Consensus 341 ~~Gpvt~~L~~~l~~iq~g~~~d~~~W~~~v~ 372 (372)
T 3dth_A 341 QPGEITMALRDTLTGIQRGTFADTHGWMARLN 372 (372)
T ss_dssp SCCHHHHHHHHHHHHHHHTSSCCTTCCEEECC
T ss_pred CcCHHHHHHHHHHHHHHcCCCCCCCCCeEECC
Confidence 58999999999999999999999999999997
No 2
>3dtg_A Branched-chain amino acid aminotransferase; open twisted alpha/beta; HET: PLP; 1.90A {Mycobacterium smegmatis} PDB: 3dtf_A* 3jz6_A* 3ht5_A*
Probab=100.00 E-value=2.6e-84 Score=668.29 Aligned_cols=340 Identities=35% Similarity=0.656 Sum_probs=317.9
Q ss_pred CCCCChhhccCCCCCCCCccceeeCceEEEEEccCceeecCeeccCCcceeCCCCccccccceEEEEEEEEEeCCCeEee
Q 012487 122 DHSDVVEEYANLKWDELGFCLIPVDYMYVMKCSKEKNFSHGILTRFGRLEMNPSSGILNYGQGVFEGLKAYRTEDGRILL 201 (462)
Q Consensus 122 ~~~~~~~~~~~~d~~~l~fg~~~tdhm~~~~~~~~~~W~ng~ivp~~~~~l~~~d~~l~YG~gvFEgmkay~~~dG~i~l 201 (462)
+++.++...+.+ ++++|||++|||||++++|+++++|+||+|+|+++++|||++++||||||||||||+|+++||+|++
T Consensus 18 ~~p~~~~~~~~~-~~~~~fg~~~tdhm~~~~~~~~~gW~ng~ivp~~~~~i~p~~~~lhYG~gvFEgiraY~~~dG~i~~ 96 (372)
T 3dtg_A 18 TNPATDAVRESI-LANPGFGKYYTDHMVSIDYTVDEGWHNAQVIPYGPIQLDPSAIVLHYGQEIFEGLKAYRWADGSIVS 96 (372)
T ss_dssp SSCCCHHHHHHH-HHSCCSSSCCCSEEEEEEEETTTEEEEEEEEESCCEEECTTCTHHHHCCEEECCEEEEECTTSCEEE
T ss_pred CCCCCcchhhhH-hhccCCCCCccceeEEEEECCCCcEeCCEEEEchhceeCcchhhhhccceeeeeEEEEECCCCeEEe
Confidence 334444454444 7899999999999999999988999999999999999999999999999999999999999999999
Q ss_pred cChHhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCcCCCCCC-cceEEEEEEeccCCcccccCCCCcEEEEEEec
Q 012487 202 FRPEQNALRMQMGADRLRMPSPTIEQFVDAVKHTVVANKQWVPPPGK-GSLYIRPLLMGSGPVLGATPAPDYTFLAFASP 280 (462)
Q Consensus 202 Fr~d~Hl~RL~~SA~~L~mp~~~~e~l~~~I~~lv~~n~~~vP~~~~-g~lyIRp~~~g~~~~lGv~p~~~~~~~I~~~P 280 (462)
|||++|++||.+||++|+||.++.+.+.+++.++++.+..|||+..+ .++||||+++++++.+|+.|+.++.++++++|
T Consensus 97 Fr~~~h~~Rl~~Sa~~l~iP~~~~e~~~~~~~~l~~~~~~~v~~~~~~~~~YiRp~~~~~~~~lgv~p~~~~~~~ii~~p 176 (372)
T 3dtg_A 97 FRPEANAARLQSSARRLAIPELPEEVFIESLRQLIAVDEKWVPPAGGEESLYLRPFVIATEPGLGVRPSNEYRYLLIASP 176 (372)
T ss_dssp ESHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHGGGSCCSSSSCEEEEEEEEEECCCCCSCSCCSEEEEEEEEEE
T ss_pred eCchHHHHHHhhcccccCCCCCCHHHHHHHHHHHHHHhhhhccccCCCCceEEEEEEEeecCccCcCCCCCceeeeEecc
Confidence 99999999999999999999999999999999999999999998765 58999999999999999999999999999999
Q ss_pred cCCCCC---CceeEEEeeeeeecCCCCCCCCCcccccccchHHHHHHHHCCCCeEEEEeccCCCEEEeeCceeEEEE---
Q 012487 281 VGNYHK---GYLNLVVEEKFYRAFPGGTGGVKAIVNYSTVFKPVAEAKAKGFSDVLFLDVKTAKYIEEVSTSNIFFL--- 354 (462)
Q Consensus 281 ~~~y~~---~~v~l~i~~~~~Ra~p~g~g~~Kt~gNYa~~l~a~~eA~~~G~ddvL~LD~~~~g~V~E~stsNiF~v--- 354 (462)
+++|+. +++.+++..++.|++|++++.+|++|||+++++++.+|+++||||+||||..++|+|+|++++|||+|
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~R~~p~~~~~~K~~gNY~~~~la~~eA~~~G~deal~Ld~~~~g~V~E~~~sNiF~V~~~ 256 (372)
T 3dtg_A 177 AGAYFKGGIKPVSVWLSHEYVRASPGGTGAAKFGGNYAASLLAQAQAAEMGCDQVVWLDAIERRYVEEMGGMNLFFVFGS 256 (372)
T ss_dssp ESCSSTTSSSCEEEEECSSCCSCCTTSSTTSCCHHHHHHHHHHHHHHHHTTCSEEEEECTTTSCBEEEETTEEEEEEESC
T ss_pred cccccccCcccceeecccceeecCcCCcchHHhcCCcchhhhHHHHHHhcCcchhhhhccccccceeecCceEEEEEEec
Confidence 999886 56778888788999999999999999999999999999999999999999867899999999999999
Q ss_pred -eCCEEEccCCCCCCccchHHHHHHHHHHHcCCcEEEEEeChhhhhcc------ceeEEEecccceEEeEEEEECCeEEE
Q 012487 355 -KGNVISTPATDGTILPGITRKSVIEIAQILGYQVEERAVAVEELFDS------EEVFCTGTAMVVNPVNSITYQGKRIE 427 (462)
Q Consensus 355 -~~~~liTPpLs~~ILpGITR~siLela~~~G~~V~Er~I~~~eL~~a------dEvF~tgTa~gI~PV~~I~~~~~~i~ 427 (462)
+|++|+|||++++||+||||++||++|+++|++|+||+|+++||.+| ||||+|||+++|+||.+|++++..+.
T Consensus 257 ~kdg~liTPpl~~~iL~GITR~sVi~LA~~~Gi~V~Er~it~~El~~A~~~~~~dEvF~tGTaa~I~PV~~Id~~~~~~~ 336 (372)
T 3dtg_A 257 GGSARLVTPELSGSLLPGITRDSLLQLATDAGFAVEERKIDVDEWQKKAGAGEITEVFACGTAAVITPVSHVKHHDGEFT 336 (372)
T ss_dssp GGGCEEEECCCCSSSCCCHHHHHHHHHHHHHTCEEEECCCBHHHHHHHHHHTSEEEEEEEETTTEEEEEEEEEETTEEEE
T ss_pred CCCceEEeCCccccccccHHHHHHHHHHHHCCceEEEEeCCHHHHHHHhhcCCCcEEEECCCcceEEEEEEEecCCceEE
Confidence 67799999999999999999999999999999999999999999988 99999999999999999998887765
Q ss_pred c-CCCchHHHHHHHHHHHHhhccCCCCCCCCeEECC
Q 012487 428 Y-KTGPETVAQKLYEMLVGIQTGRIEDKMGWTVELN 462 (462)
Q Consensus 428 ~-~~~~gp~t~~L~~~l~~iq~G~~~d~~gW~~~v~ 462 (462)
+ ++.+||+|++|+++|.+||+|+++|+|||+++||
T Consensus 337 ig~G~~Gpvt~~L~~~~~~iq~G~~~d~~~W~~~v~ 372 (372)
T 3dtg_A 337 IADGQPGEITMALRDTLTGIQRGTFADTHGWMARLN 372 (372)
T ss_dssp CTTSSCCHHHHHHHHHHHHHHTTSSCCTTCCEEECC
T ss_pred cCCCCcCHHHHHHHHHHHHHHCCCCCCCCCCcEeCC
Confidence 5 5669999999999999999999999999999997
No 3
>3uzo_A Branched-chain-amino-acid aminotransferase; BCAT, amino-acid biosynthesis, branched-CH acid biosynthesis, pyridoxal phosphate, L-GLUT; HET: PLP GLU; 2.00A {Deinococcus radiodurans} PDB: 3uzb_A* 3uyy_A*
Probab=100.00 E-value=2.3e-80 Score=635.63 Aligned_cols=334 Identities=40% Similarity=0.674 Sum_probs=305.9
Q ss_pred CChhhccCCCCCCCCccceeeCceEEEEEccCceeecCeeccCCcceeCCCCccccccceEEEEEEEEEeCCCeEeecCh
Q 012487 125 DVVEEYANLKWDELGFCLIPVDYMYVMKCSKEKNFSHGILTRFGRLEMNPSSGILNYGQGVFEGLKAYRTEDGRILLFRP 204 (462)
Q Consensus 125 ~~~~~~~~~d~~~l~fg~~~tdhm~~~~~~~~~~W~ng~ivp~~~~~l~~~d~~l~YG~gvFEgmkay~~~dG~i~lFr~ 204 (462)
..+++.+++||++||||++|||||++++|+++. |.||+|+|++++.|+|+|++||||||||||||+|++.||+|++|||
T Consensus 16 ~~~~~~~~~~~~~l~fg~~~td~m~~~~~~~~~-w~ng~i~p~~~~~i~~~d~gl~yGdgvFE~ir~y~~~dG~i~lfrl 94 (358)
T 3uzo_A 16 EQAKKLADIDWSTLGFSYIRTDLRYLAHWKDGE-WDAGTLTEDNQIHLAEGSTALHYGQQCFEGLKAYRCADGSINLFRP 94 (358)
T ss_dssp --------CCGGGCCSCCCCCSCEEEEEEETTE-ECCCEEESCCEEEEETTCHHHHSCCEEECCEEEEECTTSCEEECCH
T ss_pred cccccccCCCcccCCCCCcccCeeEEEEEeCCc-EECCEEeEcccceeChHHcceecCcEEEEEEEEEECCCCcEeecCH
Confidence 345667789999999999999999999998766 9999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCcCCCCCC-cceEEEEEEeccCCcccccCCCCcEEEEEEeccCC
Q 012487 205 EQNALRMQMGADRLRMPSPTIEQFVDAVKHTVVANKQWVPPPGK-GSLYIRPLLMGSGPVLGATPAPDYTFLAFASPVGN 283 (462)
Q Consensus 205 d~Hl~RL~~SA~~L~mp~~~~e~l~~~I~~lv~~n~~~vP~~~~-g~lyIRp~~~g~~~~lGv~p~~~~~~~I~~~P~~~ 283 (462)
++|++||++||++|+||.++.++|.++|+++++.|..|||+.+. +++||||+++++++.+|+.|+.++.++|++.|+++
T Consensus 95 ~~Hl~RL~~Sa~~L~ip~~~~e~l~~~i~~lv~~n~~~vp~~~~~~~~yiR~~v~~~~~~~G~~p~~~~~~~i~~~P~~~ 174 (358)
T 3uzo_A 95 DQNAARMRMSCRRLLMPELSDEQFIDACLQVVRANEHFLPPYGTGGSLYLRPFVIGVGDNIGVRTAPEFIFSVFCVPVGP 174 (358)
T ss_dssp HHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTGGGSCCTTSCCEEEEEEEEEEESSCCSSSCCSEEEEEEEEEEECC
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCcCCCCCCCceEEEEEEEEecCCccccCCCCCeEEEEEEecChh
Confidence 99999999999999999779999999999999999999998644 58999999999888899998888899999999999
Q ss_pred CCC---CceeEEEeeeeeecCCCCCCCCCcccccccchHHHHHHHHCCCCeEEEEeccCCCEEEeeCceeEEEEe-CCE-
Q 012487 284 YHK---GYLNLVVEEKFYRAFPGGTGGVKAIVNYSTVFKPVAEAKAKGFSDVLFLDVKTAKYIEEVSTSNIFFLK-GNV- 358 (462)
Q Consensus 284 y~~---~~v~l~i~~~~~Ra~p~g~g~~Kt~gNYa~~l~a~~eA~~~G~ddvL~LD~~~~g~V~E~stsNiF~v~-~~~- 358 (462)
|++ +|+++.+++ +.|+.|++++++|+++||+.+++++++|+++||||+||||..++|+|+|++++|||+++ ||+
T Consensus 175 ~~~~g~~~v~l~~~~-~~R~~p~~~~~~K~~~NYl~~vla~~eA~~~G~~e~l~ld~~~~g~V~E~~~sNif~v~~dg~~ 253 (358)
T 3uzo_A 175 YFKGGLTPTNFITSD-YDRAAPHGTGAAKVGGNYAASLLPGYEAKKRDFADVIYLDPATHTTIEEAGAANFFAITQDGQK 253 (358)
T ss_dssp SSCSSSCCEEEECCS-CCSSCTTSSTTSCBHHHHHHHHHHHHHHHHTTCSEECCBCTTTSCBBCBCSSSEEEEEETTSCE
T ss_pred hhhcCCccEEEEEEe-eeccCCCccccccchhhhHHHHHHHHHHHHcCCCEEEEEeCCCCCeEEEcCCeeEEEEECCCeE
Confidence 885 578998886 88999999999998779999999999999999999999997546999999999999995 787
Q ss_pred EEccCCCCCCccchHHHHHHHHHHH-cCCcEEEEEeChhhhhccceeEEEecccceEEeEEEEECCeEEEcCC--CchHH
Q 012487 359 ISTPATDGTILPGITRKSVIEIAQI-LGYQVEERAVAVEELFDSEEVFCTGTAMVVNPVNSITYQGKRIEYKT--GPETV 435 (462)
Q Consensus 359 liTPpLs~~ILpGITR~siLela~~-~G~~V~Er~I~~~eL~~adEvF~tgTa~gI~PV~~I~~~~~~i~~~~--~~gp~ 435 (462)
|+||+ +++||+||||++||++|++ +|++|+|++|+++||.+|||+|+|||+++|+||.+|+..++.+.+.+ .+||+
T Consensus 254 l~TP~-~~~iL~GItR~~vl~la~~~~g~~v~e~~i~~~eL~~adEvf~t~t~~~i~PV~~Id~~~~~~~i~~~~~~Gpv 332 (358)
T 3uzo_A 254 FVTPQ-SPSILPSITKYSLLWLAEHRLGLEVEEGDIRIDELGKFSEAGACGTAAVITPIGGIQHGDDFHVFYSESEPGPV 332 (358)
T ss_dssp EEEEC-CTTSCCCHHHHHHHHHHHHTTCCEEEEECCBTTCGGGEEEEEEECTTTSSEEEEEEEETTEEEESSCSSSCCHH
T ss_pred EEECC-cCCcccCHHHHHHHHHHHhhcCCeEEEEECCHHHHHhhcceeEEcCcceEEEEEEECcccceeEeCCCCCcCHH
Confidence 99999 8999999999999999999 99999999999999999999999999999999999987777665632 48999
Q ss_pred HHHHHHHHHHhhccCCCCCCCCeEEC
Q 012487 436 AQKLYEMLVGIQTGRIEDKMGWTVEL 461 (462)
Q Consensus 436 t~~L~~~l~~iq~G~~~d~~gW~~~v 461 (462)
|++|+++|.+||+|+.+|++||+++|
T Consensus 333 t~~L~~~~~~iq~g~~~~~~~W~~~v 358 (358)
T 3uzo_A 333 TRRLYDELVGIQYGDKEAPEGWIVKV 358 (358)
T ss_dssp HHHHHHHHHHHHTTSSCCCTTCCEEC
T ss_pred HHHHHHHHHHHHcCCCCCCCCCceEC
Confidence 99999999999999999999999987
No 4
>4dqn_A Putative branched-chain amino acid aminotransfera; aminotransferase, transferase; 1.97A {Streptococcus mutans}
Probab=100.00 E-value=1.2e-78 Score=620.31 Aligned_cols=330 Identities=40% Similarity=0.668 Sum_probs=309.7
Q ss_pred cCCCCCCCCccceeeCceEEEEEccCceeecCeeccCCcceeCCCCccccccceEEEEEEEEEeCCCeEeecChHhHHHH
Q 012487 131 ANLKWDELGFCLIPVDYMYVMKCSKEKNFSHGILTRFGRLEMNPSSGILNYGQGVFEGLKAYRTEDGRILLFRPEQNALR 210 (462)
Q Consensus 131 ~~~d~~~l~fg~~~tdhm~~~~~~~~~~W~ng~ivp~~~~~l~~~d~~l~YG~gvFEgmkay~~~dG~i~lFr~d~Hl~R 210 (462)
+++||++||||++|||||++++|.++. |.||+|+|.+++.|++.|++||||||||||||+|++.||++++|+|++|++|
T Consensus 7 ~~~~~~~l~fg~~~td~m~~~~~~~~~-w~nG~~vp~~~~~i~~~d~gl~yGdgvFE~ir~~~g~dg~~~~f~l~~Hl~R 85 (345)
T 4dqn_A 7 VDLDWKNLGFEYHKLPFRYISYYKDGK-WDDGKLTEDATLHISESSPALHYGQEAFEGLKAYRTKDGSVQLFRPNMNAER 85 (345)
T ss_dssp CCCCGGGCCSCCCCCSCEEEEEEETTE-ECCCEEESCCSCCCCTTCHHHHSCCEEECCEEEEECTTSCEEEESHHHHHHH
T ss_pred CCCCchhcCCCCcccCceEEEEecCCc-EECCEEeEhhhcccCccccccccccEEEEEEEEEeCCCCcccccCHHHHHHH
Confidence 478999999999999999999998766 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCcCCCCCC-cceEEEEEEeccCCcccccCCCCcEEEEEEeccCCCCC---
Q 012487 211 MQMGADRLRMPSPTIEQFVDAVKHTVVANKQWVPPPGK-GSLYIRPLLMGSGPVLGATPAPDYTFLAFASPVGNYHK--- 286 (462)
Q Consensus 211 L~~SA~~L~mp~~~~e~l~~~I~~lv~~n~~~vP~~~~-g~lyIRp~~~g~~~~lGv~p~~~~~~~I~~~P~~~y~~--- 286 (462)
|.+||++|+||.++.++|.++|+++++.|..|||+.+. +++||||+++++++.+|+.|+.+++++|++.|+++|+.
T Consensus 86 L~~Sa~~L~i~~~~~~~l~~~i~~lv~~n~~~vp~~~~~~~~yiR~~v~~~~~~~g~~p~~~~~~~i~~~p~~~~~~~~~ 165 (345)
T 4dqn_A 86 LQRTADRLLMPQVPTDKFIDAAKQVVRANEEYVPPYGTGATLYLRPLLIGVGDVIGVHPADEYIFTIFAMPVGNYFKGGL 165 (345)
T ss_dssp HHHHHHHTTCCCCCHHHHHHHHHHHHHHTGGGSCCTTSSCEEEEEEEEEEESCCCSSCCCSEEEEEEEEEEECCSCTTSC
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHHhccccCCCCCCCCcEEEEEEEEeCCCccCCCCCCCeEEEEEEEECccccccCC
Confidence 99999999999779999999999999999999998643 58999999998888889988878899999999998875
Q ss_pred CceeEEEeeeeeecCCCCCCCCCcccccccchHHHHHHHHCCCCeEEEEeccCCCEEEeeCceeEEEE-eCCEEEccCCC
Q 012487 287 GYLNLVVEEKFYRAFPGGTGGVKAIVNYSTVFKPVAEAKAKGFSDVLFLDVKTAKYIEEVSTSNIFFL-KGNVISTPATD 365 (462)
Q Consensus 287 ~~v~l~i~~~~~Ra~p~g~g~~Kt~gNYa~~l~a~~eA~~~G~ddvL~LD~~~~g~V~E~stsNiF~v-~~~~liTPpLs 365 (462)
+|+++.+++++.|+.|++++++|+++||+++++++++|+++||||+||||..++|+|+|++++|||++ +|++|+||+ +
T Consensus 166 ~gv~l~~~~~~~R~~~~~~~~~Kt~~nyl~~vla~~eA~~~G~de~l~ld~~~~g~v~E~~~sNif~v~~~g~l~TP~-~ 244 (345)
T 4dqn_A 166 APTNFLIQDDYDRAAPHGTGAAKVGGNYAASLLPGKVAHERQFSDVIYLDPATHTKIEEVGSANFFGITKDNEFITPL-S 244 (345)
T ss_dssp CCEEEEECTTCCSSCTTSSTTSCCHHHHHHHHHHHHHHHHTTCSCEEEECTTTSCBEEEETTEEEEEEETTCEEEECC-C
T ss_pred CCEEEEEccceEecCCCccccccccccCHHHHHHHHHHHHCCCCEEEEEcCCCCCeEEEcCCceEEEEecCCEEEeCC-C
Confidence 78999998778999999999999967999999999999999999999999744699999999999998 899999999 8
Q ss_pred CCCccchHHHHHHHHHHH-cCCcEEEEEeChhhhhccceeEEEecccceEEeEEEEECCeEEEcC-C-CchHHHHHHHHH
Q 012487 366 GTILPGITRKSVIEIAQI-LGYQVEERAVAVEELFDSEEVFCTGTAMVVNPVNSITYQGKRIEYK-T-GPETVAQKLYEM 442 (462)
Q Consensus 366 ~~ILpGITR~siLela~~-~G~~V~Er~I~~~eL~~adEvF~tgTa~gI~PV~~I~~~~~~i~~~-~-~~gp~t~~L~~~ 442 (462)
.+||+||||++||++|++ +|++|+|++|+++||.+|||+|+|||+++|+||.+|+..++.+.+. + .+||+|++|+++
T Consensus 245 ~~iL~GitR~~vl~la~~~~g~~v~e~~i~~~el~~adevf~t~t~~~i~PV~~Id~~~~~~~i~~~~~~Gpvt~~L~~~ 324 (345)
T 4dqn_A 245 PSILPSVTKYSLLYLAEHRFGMKAIEGDVCVDELDKFVEAGACGTAAVISPIGGVQHGDDFHVFYSETEVGPVTHKLYDE 324 (345)
T ss_dssp TTSCCCHHHHHHHHHHHHTTCCEEEECCCBTTCGGGEEEEEEEETTTEEEEEEEEEETTEEEESSCSSSCCHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHhhhHHhhhcchhHEEEEEEECcccceeeeCCCCCcCHHHHHHHHH
Confidence 999999999999999999 9999999999999999999999999999999999998777766664 3 489999999999
Q ss_pred HHHhhccCCCCCCCCeEECC
Q 012487 443 LVGIQTGRIEDKMGWTVELN 462 (462)
Q Consensus 443 l~~iq~G~~~d~~gW~~~v~ 462 (462)
|.+||+|+.+|++||+++|+
T Consensus 325 ~~~i~~g~~~~~~~W~~~v~ 344 (345)
T 4dqn_A 325 LTGIQFGDVKAPEGWIYKVD 344 (345)
T ss_dssp HHHHHTTSSCCCTTCEEETT
T ss_pred HHHHHcCCCCCCCCCceECC
Confidence 99999999999999999995
No 5
>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme; HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A* 2abj_A*
Probab=100.00 E-value=2.3e-78 Score=626.52 Aligned_cols=331 Identities=33% Similarity=0.549 Sum_probs=307.7
Q ss_pred hccCCCCCCCCccceeeCceEEEEEccCceeecCeeccCCcceeCCCCccccccceEEEEEEEEEeCCCeEeecChHhHH
Q 012487 129 EYANLKWDELGFCLIPVDYMYVMKCSKEKNFSHGILTRFGRLEMNPSSGILNYGQGVFEGLKAYRTEDGRILLFRPEQNA 208 (462)
Q Consensus 129 ~~~~~d~~~l~fg~~~tdhm~~~~~~~~~~W~ng~ivp~~~~~l~~~d~~l~YG~gvFEgmkay~~~dG~i~lFr~d~Hl 208 (462)
++.++||++||||++|||||++++|.++.+|.||+|+|++++.|+|.|++|||||+||||||+|+++||+|++|||++|+
T Consensus 38 ~~~~~~~~~~~fg~~~td~m~~~~~~~~~~w~ng~~~p~~~~~i~~~d~~l~yG~gvFEg~k~y~g~dg~i~~frld~H~ 117 (386)
T 2coi_A 38 LKEKPDPNNLVFGTVFTDHMLTVEWSSEFGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFRGVDNKIRLFQPNLNM 117 (386)
T ss_dssp CCCCCCCC-CCTTCCCCSEEEEEEEETTTEECCCEEEECCCEEECTTCHHHHSCCEEECCEEEEECTTSCEEEESHHHHH
T ss_pred cccCCCccccCCccccccceEEEEeCCCcEEECCEEeecccCccCcccchhhcCceeEEEEEEEeCCCCceeecCHHHHH
Confidence 35577999999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCcCCCCCCcceEEEEEEeccCCcccccCCCCcEEEEEEeccCCCCC--
Q 012487 209 LRMQMGADRLRMPSPTIEQFVDAVKHTVVANKQWVPPPGKGSLYIRPLLMGSGPVLGATPAPDYTFLAFASPVGNYHK-- 286 (462)
Q Consensus 209 ~RL~~SA~~L~mp~~~~e~l~~~I~~lv~~n~~~vP~~~~g~lyIRp~~~g~~~~lGv~p~~~~~~~I~~~P~~~y~~-- 286 (462)
+||++||++|+||.++.++|.++|+++++.|..|+|+..++++||||+++++++.+|+.|+.+++++|+++|+++|+.
T Consensus 118 ~RL~~Sa~~l~~p~~~~e~~~~~i~~lv~~~~~~vp~~~g~~~yiR~~~~~~~~~~g~~p~~~~~~~i~~~p~~~y~~~~ 197 (386)
T 2coi_A 118 DRMYRSAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTKALLFVLLSPVGPYFSSG 197 (386)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTGGGSCSSSSCEEEEEEEEEECCCSCSCSCCSEEEEEEEEEEECCCC---
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccCCCCCCccEEEEEEEEecCCccccCCCCCcEEEEEEEECccccccc
Confidence 999999999999977999999999999999999999755568999999998888899999889999999999999884
Q ss_pred --CceeEEEeeeeeecCCCCCCCCCcccccccchHHHHHHHHCCCCeEEEEeccCCCEEEeeCceeEEEEe---CC--EE
Q 012487 287 --GYLNLVVEEKFYRAFPGGTGGVKAIVNYSTVFKPVAEAKAKGFSDVLFLDVKTAKYIEEVSTSNIFFLK---GN--VI 359 (462)
Q Consensus 287 --~~v~l~i~~~~~Ra~p~g~g~~Kt~gNYa~~l~a~~eA~~~G~ddvL~LD~~~~g~V~E~stsNiF~v~---~~--~l 359 (462)
+|+++++++++.|++|++++.+|+++||+++++++++|+++||||+||||. ++|+|+|++++|||+++ || +|
T Consensus 198 ~~~~v~l~~~~~~~r~~p~~~g~~K~~~Ny~~~~la~~eA~~~G~de~L~ld~-~~g~V~E~~~sNiF~v~~~~~g~~~l 276 (386)
T 2coi_A 198 TFNPVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAVDNGCQQVLWLYG-EDHQITEVGTMNLFLYWINEDGEEEL 276 (386)
T ss_dssp --CCEEEEECTTCCSCCTTSSTTSCCTHHHHTTHHHHHHHHTTTCSEEEEEET-TTTEEEEETTEEEEEEEECTTSCEEE
T ss_pred ccccEEEEEcccccccCCCcccccccccChHHHHHHHHHHHHcCCCEEEEEEC-CCCEEEEeCCceEEEEEEcCCCCEEE
Confidence 589999988778999999999999779999999999999999999999994 27999999999999996 88 99
Q ss_pred EccCCCCCCccchHHHHHHHHHHH-cCCcEEEEEeChhhhhcc------ceeEEEecccceEEeEEEEECCeEEEcC--C
Q 012487 360 STPATDGTILPGITRKSVIEIAQI-LGYQVEERAVAVEELFDS------EEVFCTGTAMVVNPVNSITYQGKRIEYK--T 430 (462)
Q Consensus 360 iTPpLs~~ILpGITR~siLela~~-~G~~V~Er~I~~~eL~~a------dEvF~tgTa~gI~PV~~I~~~~~~i~~~--~ 430 (462)
+||+++++||+||||++||++|++ +|++|+|++|+++||.+| +|+|+|||+++|+||.+|+++++.+.+. +
T Consensus 277 ~TP~l~~~iL~GITR~~vl~la~~~~G~~V~Er~i~~~eL~~A~~~g~~dEvF~tgTa~~i~PV~~I~~~~~~~~~~~~g 356 (386)
T 2coi_A 277 ATPPLDGIILPGVTRRCILDLAHQWGEFKVSERYLTMDDLTTALEGNRVREMFGSGTACVVCPVSDILYKGETIHIPTME 356 (386)
T ss_dssp EECCCSSSSCCCHHHHHHHHHHHHHCSSEEEECCCBHHHHHHHHTTTCEEEEEEEETTTEEEEEEEEEESSSEEECGGGG
T ss_pred EECCCCCCccHHHHHHHHHHHHHhccCCcEEEEECCHHHHHHHHhcCCccEEEEecceeEEEEEEEEeeCCeEEecCCCC
Confidence 999999999999999999999999 799999999999999999 9999999999999999998888888652 3
Q ss_pred CchHHHHHHHHHHHHhhccCCCCCCCCeEECC
Q 012487 431 GPETVAQKLYEMLVGIQTGRIEDKMGWTVELN 462 (462)
Q Consensus 431 ~~gp~t~~L~~~l~~iq~G~~~d~~gW~~~v~ 462 (462)
.+||+|++|+++|.+||+|+++ +||+++|+
T Consensus 357 ~~g~vt~~L~~~l~~iq~g~~~--~~W~~~v~ 386 (386)
T 2coi_A 357 NGPKLASRILSKLTDIQYGREE--RDWTIVLS 386 (386)
T ss_dssp GTTHHHHHHHHHHHHHHTTSSC--CTTEEEC-
T ss_pred CcCHHHHHHHHHHHHHhCCCCC--CCCeEeCC
Confidence 4799999999999999999997 69999985
No 6
>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A {Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A* 1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A* 2hgx_A* 2hdk_A*
Probab=100.00 E-value=2e-75 Score=600.78 Aligned_cols=328 Identities=31% Similarity=0.519 Sum_probs=304.1
Q ss_pred ccCCCC-CCCCccceeeCceEEEEEccCceeecCeeccCCcceeCCCCccccccceEEEEEEEEEeCCCeEeecChHhHH
Q 012487 130 YANLKW-DELGFCLIPVDYMYVMKCSKEKNFSHGILTRFGRLEMNPSSGILNYGQGVFEGLKAYRTEDGRILLFRPEQNA 208 (462)
Q Consensus 130 ~~~~d~-~~l~fg~~~tdhm~~~~~~~~~~W~ng~ivp~~~~~l~~~d~~l~YG~gvFEgmkay~~~dG~i~lFr~d~Hl 208 (462)
+.+.+| ++||||++|||||+.++|++ .+|.||+|+|++++.|++.|++||||||||||||+|++.||+|++|||++|+
T Consensus 19 ~~~~~~~~~l~fg~~~~d~m~~~~~~~-~~w~ng~~~p~~~~~i~~~d~~l~yG~gvFEt~r~y~g~dG~i~~f~l~~Hl 97 (365)
T 2a1h_A 19 HKKPGPGEPLVFGKTFTDHMLMVEWND-KGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKGKDQQVRLFRPWLNM 97 (365)
T ss_dssp CCCCCTTSCCCTTCSCCSEEEEEEEET-TEECCCEEEESCCEEECTTBHHHHSCCEEECCEEEEECTTSCEEEESHHHHH
T ss_pred cCCCccccccCcCCccccceeeeeccc-CeEECCEEeEcccceeCccchhhhcCceeEeEEEEEecCCCceeecCHHHHH
Confidence 346677 99999999999999999998 8899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCcCCCCCCcceEEEEEEeccCCcccccCCCCcEEEEEEeccCCCCC--
Q 012487 209 LRMQMGADRLRMPSPTIEQFVDAVKHTVVANKQWVPPPGKGSLYIRPLLMGSGPVLGATPAPDYTFLAFASPVGNYHK-- 286 (462)
Q Consensus 209 ~RL~~SA~~L~mp~~~~e~l~~~I~~lv~~n~~~vP~~~~g~lyIRp~~~g~~~~lGv~p~~~~~~~I~~~P~~~y~~-- 286 (462)
+||++||++|+||.++.++|.++|.++++.|..|+|...+.++||||+++++++.+|+.|+.+++++|+++|+++|+.
T Consensus 98 ~RL~~Sa~~l~~~~~~~~~l~~~i~~lv~~~~~~~p~~~g~~~yiR~~~~~~~~~~g~~p~~~~~~~i~~~p~~~~~~~g 177 (365)
T 2a1h_A 98 DRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVRPVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGG 177 (365)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHHHHHTGGGSCCSTTCEEEEEEEEEECCBCCSCSCCSEEEEEEEEEEECCSSSSS
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHHhccccCCCCCCceEEEEEEEEecCCccCCCCCCCcEEEEEEEECccccccc
Confidence 999999999999977999999999999999999998654458999999998877899988888999999999999874
Q ss_pred --CceeEEEeeeeeecCCCCCCCCCcccccccchHHHHHHHHCCCCeEEEEeccCCCEEEeeCceeEEEEe---CCE--E
Q 012487 287 --GYLNLVVEEKFYRAFPGGTGGVKAIVNYSTVFKPVAEAKAKGFSDVLFLDVKTAKYIEEVSTSNIFFLK---GNV--I 359 (462)
Q Consensus 287 --~~v~l~i~~~~~Ra~p~g~g~~Kt~gNYa~~l~a~~eA~~~G~ddvL~LD~~~~g~V~E~stsNiF~v~---~~~--l 359 (462)
+++++.+++++.|++|++++++|+++||+.+++++++|+++||||+||||. ++|+|+|++++|||+++ ||+ |
T Consensus 178 ~~~~v~l~~~~~~~R~~~~~~~~~Kt~~ny~~~~la~~eA~~~G~de~L~l~d-~~G~V~E~~~sNif~v~~~~dg~~~l 256 (365)
T 2a1h_A 178 SVTPVSLLADPAFIRAWVGGVGNYKLGGNYGPTVLVQQEALKRGCEQVLWLYG-PDHQLTEVGTMNIFVYWTHEDGVLEL 256 (365)
T ss_dssp SCCCEEEEECTTCCSCCTTSSTTSCBGGGTTTHHHHHHHHHHTTCSEEEEEET-TTTEEEEETTEEEEEEEECTTSCEEE
T ss_pred cccceEEEEccccccCCCCccchhchhhccHHHHHHHHHHHHcCCCeEEEEEC-CCCeEEEcCceEEEEEEecCCCcEEE
Confidence 569999987778999999999999779999999999999999999999943 38999999999999996 665 9
Q ss_pred EccCCCCCCccchHHHHHHHHHHHc-CCcEEEEEeChhhhhcc------ceeEEEecccceEEeEEEEECCeEEEc--CC
Q 012487 360 STPATDGTILPGITRKSVIEIAQIL-GYQVEERAVAVEELFDS------EEVFCTGTAMVVNPVNSITYQGKRIEY--KT 430 (462)
Q Consensus 360 iTPpLs~~ILpGITR~siLela~~~-G~~V~Er~I~~~eL~~a------dEvF~tgTa~gI~PV~~I~~~~~~i~~--~~ 430 (462)
+||+++++||+||||++||++|+++ |++|+|+.|+++||.+| ||+|+|||+++|+||.+|+++++.+.+ ++
T Consensus 257 ~TP~l~~~iL~GITR~~vl~la~~~~G~~v~Er~i~~~eL~~A~~~g~~dEvf~tnt~~~i~PV~~i~~~~~~~~~~~~g 336 (365)
T 2a1h_A 257 VTPPLNGVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHRILYKDRNLHIPTME 336 (365)
T ss_dssp EECCCSSSSCCCHHHHHHHHHHHHHTSSEEEECCCBHHHHHHHHHTTCEEEEEEEETTTEEEEEEEEEETTEEEECTTGG
T ss_pred EeCCCCCCccccHHHHHHHHHHHhcCCCceEEEeCCHHHHHHHHhcCCccEEEEcCCeeEEEEEEEEEeCCeEEeeCCCC
Confidence 9999999999999999999999995 99999999999999999 999999999999999999887888765 34
Q ss_pred CchHHHHHHHHHHHHhhccCCCCCCCCeEEC
Q 012487 431 GPETVAQKLYEMLVGIQTGRIEDKMGWTVEL 461 (462)
Q Consensus 431 ~~gp~t~~L~~~l~~iq~G~~~d~~gW~~~v 461 (462)
.+||++++|+++|.+||+|+++ +||+++|
T Consensus 337 ~~g~vt~~L~~~~~~~~~g~~~--~~W~~~v 365 (365)
T 2a1h_A 337 NGPELILRFQKELKEIQYGIRA--HEWMFPV 365 (365)
T ss_dssp GTTHHHHHHHHHHHHHHTTSSC--CTTEEEC
T ss_pred CcCHHHHHHHHHHHHHHcCCCC--CCCeeeC
Confidence 5799999999999999999998 8999987
No 7
>3u0g_A Putative branched-chain amino acid aminotransfera; structural genomics, seattle structural genomics center for infectious disease; 1.90A {Burkholderia pseudomallei}
Probab=100.00 E-value=8e-65 Score=515.15 Aligned_cols=294 Identities=28% Similarity=0.447 Sum_probs=267.5
Q ss_pred ccCceeecCeeccCCcceeCCCCccccccceEEEEEEEEEeCCCeEeecChHhHHHHHHHHHhhcCCCCC-CHHHHHHHH
Q 012487 154 SKEKNFSHGILTRFGRLEMNPSSGILNYGQGVFEGLKAYRTEDGRILLFRPEQNALRMQMGADRLRMPSP-TIEQFVDAV 232 (462)
Q Consensus 154 ~~~~~W~ng~ivp~~~~~l~~~d~~l~YG~gvFEgmkay~~~dG~i~lFr~d~Hl~RL~~SA~~L~mp~~-~~e~l~~~I 232 (462)
.++.+|.||+++|.+++.|++.|++||||||||||||+|+++||++++|++++|++||.+||++|+|+.| +.++|.++|
T Consensus 27 ~~~~~w~nG~~vp~~~~~i~~~drg~~yGdgvFEtir~~~~~dG~~~~f~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i 106 (328)
T 3u0g_A 27 RDGKIWMDGKLIEWRDAKIHVLTHTLHYGMGVFEGVRAYKTADGGTAIFRLKEHTKRLLNSAKIFQMDVPFDQETLEAAQ 106 (328)
T ss_dssp CCSEEEETTEEEEGGGCEEESSCHHHHHCCEEECCEEEEECTTSCEEEESHHHHHHHHHHHHHHTTCCCSSCHHHHHHHH
T ss_pred CCCEEEECCEEeehHhCccCccchHHhcCceEEEEEEEEECCCCCeeeCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH
Confidence 4456799999999999999999999999999999999999888977899999999999999999999976 999999999
Q ss_pred HHHHHHcCCcCCCCCCcceEEEEEEeccCCcccccCCC-CcEEEEEEeccCCCCC-----CceeEEEeeeeeecCCCC-C
Q 012487 233 KHTVVANKQWVPPPGKGSLYIRPLLMGSGPVLGATPAP-DYTFLAFASPVGNYHK-----GYLNLVVEEKFYRAFPGG-T 305 (462)
Q Consensus 233 ~~lv~~n~~~vP~~~~g~lyIRp~~~g~~~~lGv~p~~-~~~~~I~~~P~~~y~~-----~~v~l~i~~~~~Ra~p~g-~ 305 (462)
.++++.|.. .++||||+++++.+.+|+.|.. .++++|++.|+++|+. +|+++.+++ +.|..|++ +
T Consensus 107 ~~lv~~n~~-------~~~~iR~~vtrg~~~~g~~p~~~~~~~~i~~~p~~~~~~~~~~~~gv~l~~~~-~~R~~~~~~~ 178 (328)
T 3u0g_A 107 RDVVRENKL-------ESCYLRPIIWIGSEKLGVSAKGNTIHVAIAAWPWGAYLGEEGLAKGIRVKTSS-FTRHHVNVSM 178 (328)
T ss_dssp HHHHHHTTC-------SSEEEEEEEEECSSCCSTTCCCCCEEEEEEEEECC----HHHHHHCEEEEECS-SCCCCTTTSC
T ss_pred HHHHHhcCC-------CCeEEEEEEEecCCCCCcCCCCCCcEEEEEEEEcCCCCChhhhcCCEEEEEee-eeecCCCCcc
Confidence 999998863 4789999998766678887653 5789999999988763 689999875 67888887 7
Q ss_pred CCCCcccccccchHHHHHHHHCCCCeEEEEeccCCCEEEeeCceeEEEEeCCEEEccCCCCCCccchHHHHHHHHHHHcC
Q 012487 306 GGVKAIVNYSTVFKPVAEAKAKGFSDVLFLDVKTAKYIEEVSTSNIFFLKGNVISTPATDGTILPGITRKSVIEIAQILG 385 (462)
Q Consensus 306 g~~Kt~gNYa~~l~a~~eA~~~G~ddvL~LD~~~~g~V~E~stsNiF~v~~~~liTPpLs~~ILpGITR~siLela~~~G 385 (462)
+++|+++||+.+++++++|+++|+||+||+|. +|+|+|++++|||+++|++|+||+++. ||+||||++||++|+++|
T Consensus 179 ~~~K~t~nyl~~vla~~eA~~~G~~e~l~ld~--~g~v~E~~~sNif~v~~g~l~TP~~~~-iL~GitR~~vl~~a~~~g 255 (328)
T 3u0g_A 179 VRAKASGWYVNSILANQEATADGYDEALLLDV--DGYVSEGSGENFFLVNRGKLYTPDLAS-CLDGITRDTVITLAKEAG 255 (328)
T ss_dssp TTSCBGGGHHHHHHHHHHHHHTTCSEEEEECT--TSCEEEESSSEEEEEETTEEEECCSSS-SCCCHHHHHHHHHHHHTT
T ss_pred cchhhhhhhHHHHHHHHHHHHCCCCEEEEECC--CCcEEEcCceeEEEEECCEEEeCCccc-cchHHHHHHHHHHHHHcC
Confidence 99996679999999999999999999999996 799999999999999999999999987 999999999999999999
Q ss_pred CcEEEEEeChhhhhccceeEEEecccceEEeEEEEECCeEEEcCCCchHHHHHHHHHHHHhhccCCCCCCCCeEEC
Q 012487 386 YQVEERAVAVEELFDSEEVFCTGTAMVVNPVNSITYQGKRIEYKTGPETVAQKLYEMLVGIQTGRIEDKMGWTVEL 461 (462)
Q Consensus 386 ~~V~Er~I~~~eL~~adEvF~tgTa~gI~PV~~I~~~~~~i~~~~~~gp~t~~L~~~l~~iq~G~~~d~~gW~~~v 461 (462)
++|+|++|+++||.+|||+|+|||+++|+||.+| +++.+ .++.+||++++|+++|.+||+|+.+|++||++.|
T Consensus 256 ~~v~e~~i~~~eL~~adevf~tns~~~v~PV~~I--d~~~~-~~g~~g~vt~~L~~~~~~~~~g~~~~~~~W~~~v 328 (328)
T 3u0g_A 256 IEVIEKRITRDEVYTADEAFFTGTAAEVTPIREL--DNRTI-GGGARGPITEKLQSAFFDVVNGKSAKHADWLTKI 328 (328)
T ss_dssp CCEEECCCCHHHHHTCSEEEEEETTTEEEEEEEE--TTEEC-TTSSCCHHHHHHHHHHHHHHTTCCSTTGGGEEEC
T ss_pred CeEEEEeCCHHHHhhCCEEEEEcchhhEEEEEEE--CCEEC-CCCCCCHHHHHHHHHHHHHHcCCCCCCCCCceeC
Confidence 9999999999999999999999999999999999 57765 3556899999999999999999999999999987
No 8
>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU; 1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A* 1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A*
Probab=100.00 E-value=3.1e-61 Score=483.91 Aligned_cols=292 Identities=30% Similarity=0.530 Sum_probs=265.8
Q ss_pred CceeecCeeccCCcceeCCCCccccccceEEEEEEEEEeCCCeEeecChHhHHHHHHHHHhhcCCCCC-CHHHHHHHHHH
Q 012487 156 EKNFSHGILTRFGRLEMNPSSGILNYGQGVFEGLKAYRTEDGRILLFRPEQNALRMQMGADRLRMPSP-TIEQFVDAVKH 234 (462)
Q Consensus 156 ~~~W~ng~ivp~~~~~l~~~d~~l~YG~gvFEgmkay~~~dG~i~lFr~d~Hl~RL~~SA~~L~mp~~-~~e~l~~~I~~ 234 (462)
+..|.||+++|.+++.|++.|++||||||||||||+|++.||+ ++|++++|++||.+||++|+|+.+ +.+++.+++.+
T Consensus 7 ~~~~~ng~~~~~~~~~i~~~d~g~~yG~gvFEtir~~~~~~G~-~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~l~~~i~~ 85 (309)
T 1iye_A 7 DYIWFNGEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGP-VVFRHREHMQRLHDSAKIYRFPVSQSIDELMEACRD 85 (309)
T ss_dssp SEEEETTEEEEGGGCCCCTTCHHHHHCCEEECCEEEECCTTSS-EEETHHHHHHHHHHHHHHHTCCCCSCHHHHHHHHHH
T ss_pred CeEEECCEEEEhHHcccCccchHHhccceeEEEEEEEECCCCc-EEcCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 4579999999999999999999999999999999999877883 378999999999999999999965 89999999999
Q ss_pred HHHHcCCcCCCCCCcceEEEEEEeccCCcccccCC--CCcEEEEEEeccCCCCC-----CceeEEEeeeeeecCCCC-CC
Q 012487 235 TVVANKQWVPPPGKGSLYIRPLLMGSGPVLGATPA--PDYTFLAFASPVGNYHK-----GYLNLVVEEKFYRAFPGG-TG 306 (462)
Q Consensus 235 lv~~n~~~vP~~~~g~lyIRp~~~g~~~~lGv~p~--~~~~~~I~~~P~~~y~~-----~~v~l~i~~~~~Ra~p~g-~g 306 (462)
+++.|.. +.+|||++++++...+|+.|+ .+++++|.+.|+++|+. +++++.+++ +.|..|++ ++
T Consensus 86 ~~~~~~~-------~~~~iR~~v~~g~~~~g~~p~~~~~~~~~i~~~p~~~~~~~~~~~~gv~l~~~~-~~r~~~~~~~~ 157 (309)
T 1iye_A 86 VIRKNNL-------TSAYIRPLIFVGDVGMGVNPPAGYSTDVIIAAFPWGAYLGAEALEQGIDAMVSS-WNRAAPNTIPT 157 (309)
T ss_dssp HHHHTTC-------SSEEEEEEEEECSSCSSSSCCTTCCEEEEEEEECCCCTTCTTHHHHCEEEEECS-SCCCCTTTSCT
T ss_pred HHHhcCC-------CCEEEEEEEEeCCCccCCCCCCCCCcEEEEEEEEcCccCCcccccCCeEEEEee-eeccCCCCCCc
Confidence 9998752 478999999876667888764 36889999999988763 589998875 67888776 48
Q ss_pred CCCcccccccchHHHHHHHHCCCCeEEEEeccCCCEEEeeCceeEEEEeCCEEEccCCCCCCccchHHHHHHHHHHHcCC
Q 012487 307 GVKAIVNYSTVFKPVAEAKAKGFSDVLFLDVKTAKYIEEVSTSNIFFLKGNVISTPATDGTILPGITRKSVIEIAQILGY 386 (462)
Q Consensus 307 ~~Kt~gNYa~~l~a~~eA~~~G~ddvL~LD~~~~g~V~E~stsNiF~v~~~~liTPpLs~~ILpGITR~siLela~~~G~ 386 (462)
.+|+++||+.+++++++|+++|+||+||+|. +|+|+|++++|||+++||+|+||+++.++|+||||+.||++|+++|+
T Consensus 158 ~~K~~~ny~~~~la~~~A~~~G~de~l~ld~--~G~V~Egs~sNif~v~~g~l~TP~l~~~iL~GitR~~ll~~a~~~g~ 235 (309)
T 1iye_A 158 AAKAGGNYLSSLLVGSEARRHGYQEGIALDV--NGYISEGAGENLFEVKDGVLFTPPFTSSALPGITRDAIIKLAKELGI 235 (309)
T ss_dssp TSCBGGGHHHHHHHHHHHHHTTCSEEEEECT--TSBEEEETTBEEEEEETTEEEECCGGGTCCCCHHHHHHHHHHHHTTC
T ss_pred cccchhhhHHHHHHHHHHHHcCCCEEEEECC--CCcEEEcCceEEEEEECCEEECCCCCCCCCCCHHHHHHHHHHHHcCC
Confidence 9998779999999999999999999999996 79999999999999999999999999999999999999999999999
Q ss_pred cEEEEEeChhhhhccceeEEEecccceEEeEEEEECCeEEEcCCCchHHHHHHHHHHHHhhccCCCCCCCCeEEC
Q 012487 387 QVEERAVAVEELFDSEEVFCTGTAMVVNPVNSITYQGKRIEYKTGPETVAQKLYEMLVGIQTGRIEDKMGWTVEL 461 (462)
Q Consensus 387 ~V~Er~I~~~eL~~adEvF~tgTa~gI~PV~~I~~~~~~i~~~~~~gp~t~~L~~~l~~iq~G~~~d~~gW~~~v 461 (462)
+|+|++|+++||.+|||+|+|||+++|+||.+| +++.+ .++.+||++++|+++|.++|+|+.+|+++|++.|
T Consensus 236 ~v~E~~i~~~eL~~adevfltns~~gv~PV~~i--d~~~~-~~g~~g~~~~~l~~~~~~~~~g~~~~~~~w~~~v 307 (309)
T 1iye_A 236 EVREQVLSRESLYLADEVFMSGTAAEITPVRSV--DGIQV-GEGRCGPVTKRIQQAFFGLFTGETEDKWGWLDQV 307 (309)
T ss_dssp CEEECCCBTTHHHHCSEEEEEETTTEEEEEEEE--TTEEC-TTSSCCHHHHHHHHHHHGGGTTSSCCCSCCEEEC
T ss_pred eEEEEeCCHHHHhhCcEEEEccCCCEEEEEEEE--CCEEC-CCCCCCHHHHHHHHHHHHHHcCCCCccCCCCeEC
Confidence 999999999999999999999999999999999 57665 3456899999999999999999999999999988
No 9
>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB: 1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A*
Probab=100.00 E-value=6.9e-61 Score=481.37 Aligned_cols=292 Identities=33% Similarity=0.441 Sum_probs=262.5
Q ss_pred CceeecCeeccCCcceeCCCCccccccceEEEEEEEEEeCCCeEeecChHhHHHHHHHHHhhcCCCCC-CHHHHHHHHHH
Q 012487 156 EKNFSHGILTRFGRLEMNPSSGILNYGQGVFEGLKAYRTEDGRILLFRPEQNALRMQMGADRLRMPSP-TIEQFVDAVKH 234 (462)
Q Consensus 156 ~~~W~ng~ivp~~~~~l~~~d~~l~YG~gvFEgmkay~~~dG~i~lFr~d~Hl~RL~~SA~~L~mp~~-~~e~l~~~I~~ 234 (462)
+..|.||+++|.+++.|++.|++||||||||||||+|++.||. ++|++++|++||.+||++|+|+.+ +.+++.++|.+
T Consensus 6 ~~~~~nG~~~~~~~~~i~~~d~g~~yG~gvFEtir~~~g~~g~-~~~~l~~Hl~RL~~Sa~~l~~~~~~~~~~l~~~i~~ 84 (308)
T 2eiy_A 6 GLIWMNGAFVPQEEAKTSVLSHALHYGTSVFEGIRAYETAKGP-AIFRLKEHVKRFYNSAKVLRMEIPFAPEELEEAIKE 84 (308)
T ss_dssp CSEEETTEEECGGGCCCCTTCHHHHHCCEEECCEEEECCTTSC-EEETHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHH
T ss_pred CeEEECCEEeEhHHCccCccchHhhhcceEEEEEEEECCCCcc-cccCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 4579999999999999999999999999999999999887776 689999999999999999999965 89999999999
Q ss_pred HHHHcCCcCCCCCCcceEEEEEEeccCCcccccCC--CCcEEEEEEeccCCCC-----CCceeEEEeeeeeecCCCC-CC
Q 012487 235 TVVANKQWVPPPGKGSLYIRPLLMGSGPVLGATPA--PDYTFLAFASPVGNYH-----KGYLNLVVEEKFYRAFPGG-TG 306 (462)
Q Consensus 235 lv~~n~~~vP~~~~g~lyIRp~~~g~~~~lGv~p~--~~~~~~I~~~P~~~y~-----~~~v~l~i~~~~~Ra~p~g-~g 306 (462)
+++.+.. +.+|||+++++++..+|+.|. .+++++|.+.|+++|+ .+++++.+++ +.|..|++ ++
T Consensus 85 ~~~~~~~-------~~~~iR~~v~~g~~~~~~~p~~~~~~~~~i~~~p~~~~~~~~~~~~gv~l~~~~-~~r~~~~~~~~ 156 (308)
T 2eiy_A 85 VVRRNGY-------RSCYIRPLAWMGAKALGVNPLPNNPAEVMVAAWEWGAYLGEEAVRKGARLITSS-WARFPANVMPG 156 (308)
T ss_dssp HHHHTTC-------SSEEEEEEEECCSSCCSSCCGGGCSCEEEEEEEEC--------CCSCEEEEECS-SCBCCTTTSCT
T ss_pred HHHhCCC-------CcEEEEEEEEecCCccCcCCCCCCCeEEEEEEEEcCccCCcccccCCeEEEEec-ceecCCCCcCc
Confidence 9998752 468999999877667788764 5788999999998764 2689998875 57877765 48
Q ss_pred CCCcccccccchHHHHHHHHCCCCeEEEEeccCCCEEEeeCceeEEEEeCCEEEccCCCCCCccchHHHHHHHHHHHcCC
Q 012487 307 GVKAIVNYSTVFKPVAEAKAKGFSDVLFLDVKTAKYIEEVSTSNIFFLKGNVISTPATDGTILPGITRKSVIEIAQILGY 386 (462)
Q Consensus 307 ~~Kt~gNYa~~l~a~~eA~~~G~ddvL~LD~~~~g~V~E~stsNiF~v~~~~liTPpLs~~ILpGITR~siLela~~~G~ 386 (462)
.+|+++||+.+++++++|+++|+||+||+|. +|+|+|++++|||+++||+|+||+++. +|+||||+.||++|+++|+
T Consensus 157 ~~Kt~~ny~~~~la~~~A~~~G~de~l~ld~--~G~V~Egs~sNif~v~~g~l~TP~~~~-iL~GitR~~ll~~a~~~g~ 233 (308)
T 2eiy_A 157 KAKVGGNYVNSALAKMEAVAAGADEALLLDE--EGYVAEGSGENLFFVRDGVIYALEHSV-NLEGITRDSVIRIAKDLGY 233 (308)
T ss_dssp TSCBGGGHHHHHHHHHHHHHTTCSEEEEEBT--TSSEEEESSCEEEEEETTEEEEECCTT-SCCCHHHHHHHHHHHHTTC
T ss_pred ceehhhhHHHHHHHHHHHHHcCCCEEEEECC--CCeEEEcCceEEEEEECCEEEeCCcCC-CCchHHHHHHHHHHHHCCC
Confidence 9999977999999999999999999999996 799999999999999999999999988 9999999999999999999
Q ss_pred cEEEEEeChhhhhccceeEEEecccceEEeEEEEECCeEEEcCCCchHHHHHHHHHHHHhhccCCCCCCCCeEECC
Q 012487 387 QVEERAVAVEELFDSEEVFCTGTAMVVNPVNSITYQGKRIEYKTGPETVAQKLYEMLVGIQTGRIEDKMGWTVELN 462 (462)
Q Consensus 387 ~V~Er~I~~~eL~~adEvF~tgTa~gI~PV~~I~~~~~~i~~~~~~gp~t~~L~~~l~~iq~G~~~d~~gW~~~v~ 462 (462)
+|+|++|+++||.+|||+|+|||+++|+||.+| +++.+ ..+.+||++++|+++|.++|+|+.+|+++|++.|.
T Consensus 234 ~v~E~~i~~~dL~~adevfltns~~gv~pV~~i--d~~~~-~~g~~g~~~~~l~~~~~~~~~~~~~~~~~w~~~v~ 306 (308)
T 2eiy_A 234 EVQVVRATRDQLYMADEVFMTGTAAEVTPVSMI--DWRPI-GKGTAGPVALRLREVYLEAVTGRRPEYEGWLTYVN 306 (308)
T ss_dssp CEEEECCCHHHHHTCSEEEEEETTTEEEEEEEE--TTEEC-TTSSCCHHHHHHHHHHHHHHTTCCGGGGGGEEECC
T ss_pred eEEEEeCCHHHHhhCCEEEEccCcceEEEEEEE--cCEEC-CCCCCCHHHHHHHHHHHHHHcCCCCCccCCCeeCC
Confidence 999999999999999999999999999999999 57765 34557999999999999999999999999999883
No 10
>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase; HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB: 4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A* 2dab_A*
Probab=100.00 E-value=2.5e-55 Score=435.71 Aligned_cols=267 Identities=22% Similarity=0.343 Sum_probs=232.6
Q ss_pred ceeecCeeccCCcceeCCCCccccccceEEEEEEEEEeCCCeEeecChHhHHHHHHHHHhhcCCCCC-CHHHHHHHHHHH
Q 012487 157 KNFSHGILTRFGRLEMNPSSGILNYGQGVFEGLKAYRTEDGRILLFRPEQNALRMQMGADRLRMPSP-TIEQFVDAVKHT 235 (462)
Q Consensus 157 ~~W~ng~ivp~~~~~l~~~d~~l~YG~gvFEgmkay~~~dG~i~lFr~d~Hl~RL~~SA~~L~mp~~-~~e~l~~~I~~l 235 (462)
..|.||+++|.+++.|++.|++||||||||||||+| +|+ +|++++|++||.+||++|+||.+ +.++|.++|+++
T Consensus 2 ~~~~nG~~~~~~~~~i~~~d~g~~yGdgvFEtir~~---~g~--~f~l~~Hl~RL~~Sa~~l~i~~~~~~~~l~~~i~~l 76 (277)
T 3daa_A 2 YTLWNDQIVKDEEVKIDKEDRGYQFGDGVYEVVKVY---NGE--MFTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHEL 76 (277)
T ss_dssp EEEETTEEEEGGGCCBCTTBHHHHTCCEEEEEEEEE---TTE--ETTHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHH
T ss_pred EEEECCEEeEhHHCeechhhhHHhcccEEEEEEEEE---CCE--EcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 469999999999999999999999999999999999 676 79999999999999999999965 899999999999
Q ss_pred HHHcCCcCCCCCCcceEEEEEEeccCCccccc-C--CCCcEEEEEEeccCCCC---CCceeEEEeeeeeecCCCCCCCCC
Q 012487 236 VVANKQWVPPPGKGSLYIRPLLMGSGPVLGAT-P--APDYTFLAFASPVGNYH---KGYLNLVVEEKFYRAFPGGTGGVK 309 (462)
Q Consensus 236 v~~n~~~vP~~~~g~lyIRp~~~g~~~~lGv~-p--~~~~~~~I~~~P~~~y~---~~~v~l~i~~~~~Ra~p~g~g~~K 309 (462)
++.|.. .++.+||+++ .|.++ .|+. | ..+++++|++.|++++. .+|+++.++++ .| ..++++|
T Consensus 77 i~~n~~-----~~~~lri~vt-rG~~~-r~~~~p~~~~~~~~~i~~~p~~~~~~~~~~gv~~~~~~~-~r---~~~~~~K 145 (277)
T 3daa_A 77 VEKNEL-----NTGHIYFQVT-RGTSP-RAHQFPENTVKPVIIGYTKENPRPLENLEKGVKATFVED-IR---WLRCDIK 145 (277)
T ss_dssp HHHHTC-----CSEEEEEEEE-SCBCS-CCSSCCSSCCCCEEEEEEEECCCCHHHHHHCEEEEEEEC-CC---CSCTTSC
T ss_pred HHhcCC-----CcEEEEEEEE-ecCCC-cCCCCCCCCCCcEEEEEEEECCCChHHHhCCeEEEEecC-cc---ccCCCcc
Confidence 999863 2344555432 34443 3433 3 45688999999998643 27899988764 23 2457999
Q ss_pred cccccccchHHHHHHHHCCCCeEEEEeccCCCEEEeeCceeEEEEeCCEEEccCCCCCCccchHHHHHHHHHHHcCCcEE
Q 012487 310 AIVNYSTVFKPVAEAKAKGFSDVLFLDVKTAKYIEEVSTSNIFFLKGNVISTPATDGTILPGITRKSVIEIAQILGYQVE 389 (462)
Q Consensus 310 t~gNYa~~l~a~~eA~~~G~ddvL~LD~~~~g~V~E~stsNiF~v~~~~liTPpLs~~ILpGITR~siLela~~~G~~V~ 389 (462)
++ ||+.+++++++|+++|+||+||+| +|+|+|++++|||+++|++|+||+++.++|+||||+.||++|+++|++|+
T Consensus 146 t~-nyl~~~la~~eA~~~g~~e~l~l~---~g~v~E~~~sNif~~~~~~l~TP~~~~~iL~GitR~~vl~~~~~~g~~v~ 221 (277)
T 3daa_A 146 SL-NLLGAVLAKQEAHEKGCYEAILHR---NNTVTEGSSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEINMPVK 221 (277)
T ss_dssp BS-CCHHHHHHHHHHHHTTCSEEEEEE---TTEEEEETTBEEEEEETTEEEECCSSTTSCCCHHHHHHHHHHHHTTCCEE
T ss_pred hh-hhHHHHHHHHHHHHCCCCEEEEEc---CCEEEEcCceEEEEEECCEEECCCCcCCCCccHHHHHHHHHHHHcCCeEE
Confidence 86 999999999999999999999997 59999999999999999999999999999999999999999999999999
Q ss_pred EEEeChhhhhccceeEEEecccceEEeEEEEECCeEEEcCCCchHHHHHHHHHHHHh
Q 012487 390 ERAVAVEELFDSEEVFCTGTAMVVNPVNSITYQGKRIEYKTGPETVAQKLYEMLVGI 446 (462)
Q Consensus 390 Er~I~~~eL~~adEvF~tgTa~gI~PV~~I~~~~~~i~~~~~~gp~t~~L~~~l~~i 446 (462)
|++|+++||.+|||+|+|||+++|+||.+| +++.+ .++.+||+|++|+++|.+.
T Consensus 222 e~~i~~~el~~adevf~~ns~~~i~pV~~i--d~~~~-~~g~~g~~t~~L~~~~~~~ 275 (277)
T 3daa_A 222 EIPFTTHEALKMDELFVTSTTSEITPVIEI--DGKLI-RDGKVGEWTRKLQKQFETK 275 (277)
T ss_dssp CCCCBHHHHHTCSEEEEEETTTEEEEEEEE--TTEES-TTSSCCHHHHHHHHHHHTT
T ss_pred EEeCCHHHHHhcCeeeeecChhhEEEEEEE--CCEEC-CCCCcCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999 57765 3455899999999999764
No 11
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET: PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB: 1et0_A* 1i2l_A*
Probab=100.00 E-value=1.1e-53 Score=421.27 Aligned_cols=260 Identities=18% Similarity=0.223 Sum_probs=233.0
Q ss_pred eeecCeeccCCcceeCCCCccccccceEEEEEEEEEeCCCeEeecChHhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH
Q 012487 158 NFSHGILTRFGRLEMNPSSGILNYGQGVFEGLKAYRTEDGRILLFRPEQNALRMQMGADRLRMPSPTIEQFVDAVKHTVV 237 (462)
Q Consensus 158 ~W~ng~ivp~~~~~l~~~d~~l~YG~gvFEgmkay~~~dG~i~lFr~d~Hl~RL~~SA~~L~mp~~~~e~l~~~I~~lv~ 237 (462)
.|.||+ .++.+++.|++||||||||||||+| +|+ +|++++|++||.+||++|+|+.++.+++.+.|.++++
T Consensus 2 ~~~nG~----~~~~i~~~d~g~~yG~gvfEtir~~---~G~--~~~l~~Hl~RL~~Sa~~l~~~~~~~~~l~~~i~~~~~ 72 (269)
T 1i2k_A 2 FLINGH----KQESLAVSDRATQFGDGCFTTARVI---DGK--VSLLSAHIQRLQDACQRLMISCDFWPQLEQEMKTLAA 72 (269)
T ss_dssp EEETTE----EESCCCTTCHHHHHCCEEEEEEEEE---TTE--ETTHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHH
T ss_pred EEECCC----cCCccCccccccccceeEEEEEEEE---CCE--EecHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 488998 3578999999999999999999999 776 7999999999999999999998789999999999998
Q ss_pred HcCCcCCCCCCcceEEEEEEeccCCcccccCC--CCcEEEEEEeccCCCC----CCceeEEEeeeeeecCCCCCCCCCcc
Q 012487 238 ANKQWVPPPGKGSLYIRPLLMGSGPVLGATPA--PDYTFLAFASPVGNYH----KGYLNLVVEEKFYRAFPGGTGGVKAI 311 (462)
Q Consensus 238 ~n~~~vP~~~~g~lyIRp~~~g~~~~lGv~p~--~~~~~~I~~~P~~~y~----~~~v~l~i~~~~~Ra~p~g~g~~Kt~ 311 (462)
.+. ..|||+.++++....|+.|+ .+++++|.+.|+++++ .+++++.+++ ..|..+..++.+|+.
T Consensus 73 ~~~---------~~~iR~~v~~g~~~~g~~p~~~~~~~~~i~~~p~~~~~~~~~~~g~~l~~~~-~~~~~~~~~~~~Kt~ 142 (269)
T 1i2k_A 73 EQQ---------NGVLKVVISRGSGGRGYSTLNSGPATRILSVTAYPAHYDRLRNEGITLALSP-VRLGRNPHLAGIKHL 142 (269)
T ss_dssp HHC---------SEEEEEEEECCSCCSTTCCTTCCCCEEEEEEECCCSHHHHHHHHCEEEEECS-CCBCCCTTTTBCCBS
T ss_pred hCC---------CeEEEEEEEcCCCCCCCCCccCCCcEEEEEEEECCCcchhhhcCCeEEEEec-eecCCCCcccCcchh
Confidence 642 46999998876556777765 5788999999998864 2689999875 566666678999996
Q ss_pred cccccchHHHHHHHHCCCCeEEEEeccCCCEEEeeCceeEEEEeCCEEEccCCCCCCccchHHHHHHHHHHHcCCcEEEE
Q 012487 312 VNYSTVFKPVAEAKAKGFSDVLFLDVKTAKYIEEVSTSNIFFLKGNVISTPATDGTILPGITRKSVIEIAQILGYQVEER 391 (462)
Q Consensus 312 gNYa~~l~a~~eA~~~G~ddvL~LD~~~~g~V~E~stsNiF~v~~~~liTPpLs~~ILpGITR~siLela~~~G~~V~Er 391 (462)
||+.+++++++|+++|+||+||+|. +|+|+|++++|||+++||+|+||+++.++|+||||+.||++|+++|++|+|+
T Consensus 143 -n~~~~~~a~~~A~~~G~de~l~ld~--~G~v~E~s~sNif~v~~g~l~TP~~~~~iL~GitR~~ll~~a~~~g~~v~e~ 219 (269)
T 1i2k_A 143 -NRLEQVLIRSHLEQTNADEALVLDS--EGWVTECCAANLFWRKGNVVYTPRLDQAGVNGIMRQFCIRLLAQSSYQLVEV 219 (269)
T ss_dssp -CCHHHHHHHHHHTTSSCSEEEEEBT--TSBEEECSSSEEEEEETTEEEEECCSSSSBCCHHHHHHHHHHHHSSSEEEEE
T ss_pred -hhHHHHHHHHHHHHCCCCEEEEECC--CCcEEEcCceEEEEEECCEEECCCCccCccCCHHHHHHHHHHHHcCCeEEEE
Confidence 9999999999999999999999996 7999999999999999999999999999999999999999999999999999
Q ss_pred EeChhhhhccceeEEEecccceEEeEEEEECCeEEEcCCCchHHHHHHHHHHHH
Q 012487 392 AVAVEELFDSEEVFCTGTAMVVNPVNSITYQGKRIEYKTGPETVAQKLYEMLVG 445 (462)
Q Consensus 392 ~I~~~eL~~adEvF~tgTa~gI~PV~~I~~~~~~i~~~~~~gp~t~~L~~~l~~ 445 (462)
+|+++||.+|||+|+|||+++|+||.+| +++.+ . .||++++|+++|..
T Consensus 220 ~i~~~eL~~adevfltns~~gv~pV~~i--d~~~~--~--~g~~~~~l~~~~~~ 267 (269)
T 1i2k_A 220 QASLEESLQADEMVICNALMPVMPVCAC--GDVSF--S--SATLYEYLAPLCER 267 (269)
T ss_dssp CCBHHHHHTCSEEEEECSSSCEEEEEEE--TTEEC--C--CCHHHHHHHHHHHT
T ss_pred ECCHHHHhhCCEEEEcCChhheEEEEEE--CCEEe--c--CcHHHHHHHHHHhc
Confidence 9999999999999999999999999999 57765 3 38999999999863
No 12
>2xpf_A 4-amino-4-deoxychorismate lyase; para-aminobenzoic acid, folate biosynthesis; HET: PLP PG4; 1.75A {Pseudomonas aeruginosa} PDB: 2y4r_A* 2xpf_B*
Probab=100.00 E-value=3.2e-53 Score=423.38 Aligned_cols=260 Identities=21% Similarity=0.256 Sum_probs=232.4
Q ss_pred ceeecCeeccCCcceeCCCCccccccceEEEEEEEEEeCCCeEeecChHhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 012487 157 KNFSHGILTRFGRLEMNPSSGILNYGQGVFEGLKAYRTEDGRILLFRPEQNALRMQMGADRLRMPSPTIEQFVDAVKHTV 236 (462)
Q Consensus 157 ~~W~ng~ivp~~~~~l~~~d~~l~YG~gvFEgmkay~~~dG~i~lFr~d~Hl~RL~~SA~~L~mp~~~~e~l~~~I~~lv 236 (462)
..|.||+++ +.+++.|++|+||||||||||+| ||+ +|++++|++||.+||++|+||.+ .+.+.++|.+++
T Consensus 23 ~~~~nG~~~----~~i~~~d~g~~yGdgvFEtir~~---~G~--~~~l~~Hl~RL~~Sa~~l~~~~~-~~~l~~~i~~~v 92 (292)
T 2xpf_A 23 LDWVDGRPA----AELSVRDRGLAYGDGLFETLAVR---AGT--PRLLERHLARLEEGCRRLAIPLD-TAALRQELLAFC 92 (292)
T ss_dssp CEEETTEEC----SEEETTBHHHHHCCEEEEEEEEE---TTE--ETTHHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHH
T ss_pred EEEECCEEE----EEEcccchhhhcCcEeEEEEEEE---CCE--ECCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHH
Confidence 359999998 68999999999999999999998 787 78899999999999999999985 899999999999
Q ss_pred HHcCCcCCCCCCcceEEEEEEeccCCcccccCC--CCcEEEEEEeccCCCC----CCceeEEEeeeeeecCCCCCCCCCc
Q 012487 237 VANKQWVPPPGKGSLYIRPLLMGSGPVLGATPA--PDYTFLAFASPVGNYH----KGYLNLVVEEKFYRAFPGGTGGVKA 310 (462)
Q Consensus 237 ~~n~~~vP~~~~g~lyIRp~~~g~~~~lGv~p~--~~~~~~I~~~P~~~y~----~~~v~l~i~~~~~Ra~p~g~g~~Kt 310 (462)
+... ..|||+.++.+.+.+|+.|+ .+++++|.+.|+++++ .+|+++.+++. .|..+..++.+|+
T Consensus 93 ~~~~---------~~~iR~~v~rg~~~~g~~p~~~~~~~~~i~~~p~~~~~~~~~~~gv~l~~~~~-~~~~~~~~~~~Kt 162 (292)
T 2xpf_A 93 AALG---------DGVAKLIVTRGEGLRGYAPPAEASPRRILSGSPRPAYPERHWQQGVRLFACRT-RLAEQPLLAGLKH 162 (292)
T ss_dssp HHHC---------SEEEEEEEECCBCCSSSSCCTTCCCEEEEEEECCCCCCHHHHHTCEEEEECCC-CBCCCTTTTBCCB
T ss_pred HhCC---------CcEEEEEEEecCCCCCCCCCCCCCcEEEEEEEECCccchhhccCCeEEEEeee-eccCCCCCCCcch
Confidence 8742 35899988854446788765 4678999999999876 37999998864 4555556889998
Q ss_pred ccccccchHHHHHHHHCCCCeEEEEeccCCCEEEeeCceeEEEEeCCEEEccCCCCCCccchHHHHHHHHHHHcCCcEEE
Q 012487 311 IVNYSTVFKPVAEAKAKGFSDVLFLDVKTAKYIEEVSTSNIFFLKGNVISTPATDGTILPGITRKSVIEIAQILGYQVEE 390 (462)
Q Consensus 311 ~gNYa~~l~a~~eA~~~G~ddvL~LD~~~~g~V~E~stsNiF~v~~~~liTPpLs~~ILpGITR~siLela~~~G~~V~E 390 (462)
+ ||+.+++++++|+++|+||+||+|. +|+|+|++++|||+++||+|+|||++.++|+||||+.||++|+++|++|+|
T Consensus 163 ~-ny~~~~la~~~A~~~G~de~L~ld~--~G~V~Egs~sNif~v~~g~l~TPpl~~~iL~GitR~~vl~~a~~~G~~v~E 239 (292)
T 2xpf_A 163 L-NRLEQVLARAEWSDAGHAEGLMLDV--HERVVEGVFSNLLLVLDGTLVAPDLRRCGVAGVMRAELLERAEGIGVPLAI 239 (292)
T ss_dssp S-CCHHHHHHHTTCCCTTCSEEEEEBT--TCCEEEESSSEEEEEETTEEEEECCSSSSBCCHHHHHHHHHHHHTTCCEEE
T ss_pred h-hhHHHHHHHHHHHHcCCCEEEEECC--CCCEEEcCCeEEEEEECCEEEeCCCCCccCCCHHHHHHHHHHHHcCCeEEE
Confidence 6 9999999999999999999999996 799999999999999999999999999999999999999999999999999
Q ss_pred EEeChhhhhccceeEEEecccceEEeEEEEECCeEEEcCCCchHHHHHHHHHHHH
Q 012487 391 RAVAVEELFDSEEVFCTGTAMVVNPVNSITYQGKRIEYKTGPETVAQKLYEMLVG 445 (462)
Q Consensus 391 r~I~~~eL~~adEvF~tgTa~gI~PV~~I~~~~~~i~~~~~~gp~t~~L~~~l~~ 445 (462)
++|+++||.+|||+|+|||+++|+||.+| +++.+ . +||++++|+++|..
T Consensus 240 ~~i~~~eL~~adevfltns~~gv~PV~~i--d~~~~--~--~g~~t~~l~~~~~~ 288 (292)
T 2xpf_A 240 RDVSMAELATADEVFLCNSQFGIWPVRAL--DEHVW--P--VGELTRKLQDQLRD 288 (292)
T ss_dssp ECBCHHHHHTCSEEEEEETTTEEEEEEEE--TTEEC--C--CCHHHHHHHHHHHH
T ss_pred EeCCHHHHHhCCEEEEEcCcccEEEEEEE--CCEEe--C--CCHHHHHHHHHHHH
Confidence 99999999999999999999999999999 57665 2 68999999999875
No 13
>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2, pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella pneumophila}
Probab=100.00 E-value=1.4e-52 Score=414.76 Aligned_cols=260 Identities=18% Similarity=0.244 Sum_probs=225.8
Q ss_pred eeecCeeccCCcceeCCCCccccccceEEEEEEEEEeCCCeEeecChHhHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHH
Q 012487 158 NFSHGILTRFGRLEMNPSSGILNYGQGVFEGLKAYRTEDGRILLFRPEQNALRMQMGADRLRMPSP-TIEQFVDAVKHTV 236 (462)
Q Consensus 158 ~W~ng~ivp~~~~~l~~~d~~l~YG~gvFEgmkay~~~dG~i~lFr~d~Hl~RL~~SA~~L~mp~~-~~e~l~~~I~~lv 236 (462)
.|.|| .+++.|++.|++||||||||||||+| +|+ +|++++|++||.+||++|+||.| +.+++.++|.+++
T Consensus 6 ~~~nG----~~~a~i~~~d~g~~yG~gvFEtir~~---~g~--~~~l~~Hl~RL~~Sa~~l~i~~p~~~~~l~~~i~~l~ 76 (272)
T 3lul_A 6 VIEDK----GDMTPSFGIDDRIFLGEGLFETIRVN---SSK--PSFAYMHWERLGNSARQLGIPFEISFDDWFEHLIQKI 76 (272)
T ss_dssp ECCCC----C--CCCCCTTBGGGGTCEEEEEEEEE---TTE--ESSHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHH
T ss_pred EEECC----ccccccCCccchhhcceEeEEEEEEE---CCE--eCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 58888 77889999999999999999999999 676 79999999999999999999987 9999999999999
Q ss_pred HHcCCcCCCCCCcceEEEEEEeccCCcccccCCCC--cEEEEEEeccCCCCCCceeEEEeeeeeecCCCCCCCCCccccc
Q 012487 237 VANKQWVPPPGKGSLYIRPLLMGSGPVLGATPAPD--YTFLAFASPVGNYHKGYLNLVVEEKFYRAFPGGTGGVKAIVNY 314 (462)
Q Consensus 237 ~~n~~~vP~~~~g~lyIRp~~~g~~~~lGv~p~~~--~~~~I~~~P~~~y~~~~v~l~i~~~~~Ra~p~g~g~~Kt~gNY 314 (462)
+.|.. ...|||+.++++.+.+|+.++.. ++++++ .|+.+.. .++++.++ .+.|+.+++++.+|++ ||
T Consensus 77 ~~~~~-------~~~~irl~v~rg~~~~g~~~~~~~~~~~~~~-~p~~~~~-~~v~l~~~-~~~r~~~~~~~~~Kt~-ny 145 (272)
T 3lul_A 77 QKDNL-------YHGGIKAILSGGPASRGLAERGQVSQLIFQT-FNYSIQK-HPVRLISI-NWLRDKANPLYQLKSV-NY 145 (272)
T ss_dssp HHTTC-------SSEEEEEEEECCBCCSSTTCCCSSEEEEEEE-ECCCCCC-SCEEEEEE-EEEECTTCGGGGSCBS-CC
T ss_pred HhcCC-------CCEEEEEEEEecCCccCcCCCCCCCcEEEEE-ECCCCcc-ccEEEEEE-eEEecCCCcccchhhh-cc
Confidence 98863 46789988886655677776543 455555 5543221 46888776 4788888889999996 99
Q ss_pred ccchHHHHHHHHCCCCeEEEEeccCCCEEEeeCceeEEEEeCCEEEccCCCCCCccchHHHHHHHHHHHcCCcEEEEEeC
Q 012487 315 STVFKPVAEAKAKGFSDVLFLDVKTAKYIEEVSTSNIFFLKGNVISTPATDGTILPGITRKSVIEIAQILGYQVEERAVA 394 (462)
Q Consensus 315 a~~l~a~~eA~~~G~ddvL~LD~~~~g~V~E~stsNiF~v~~~~liTPpLs~~ILpGITR~siLela~~~G~~V~Er~I~ 394 (462)
+.+++++++|+++|+||+||+|. +|+|+|++++|||+++|++|+|||++.++|+||||+.||++|+++|++|+|++|+
T Consensus 146 l~~~la~~~A~~~G~de~L~ld~--~g~v~E~~~sNif~~~~g~l~TP~l~~~iL~GitR~~ll~la~~~g~~v~e~~i~ 223 (272)
T 3lul_A 146 LEAIIAQRQAIAVGADDALFFNT--ENHVTETTCANLFLIENNILYTPRVEDGILPGITRARLISHCQQHKMSVQEISLT 223 (272)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEET--TSBEEEESSCEEEEEETTEEEECCGGGTCCCCHHHHHHHHHHHHTTCCEEECCCB
T ss_pred HHHHHHHHHHHHcCCCEEEEECC--CCeEEEcCCeEEEEEECCEEECCCCccCcCcCHHHHHHHHHHHHcCCeEEEEECC
Confidence 99999999999999999999996 7999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccceeEEEecccceEEeEEEEECCeEEEcCCCchHHHHHHHHHHHHhhc
Q 012487 395 VEELFDSEEVFCTGTAMVVNPVNSITYQGKRIEYKTGPETVAQKLYEMLVGIQT 448 (462)
Q Consensus 395 ~~eL~~adEvF~tgTa~gI~PV~~I~~~~~~i~~~~~~gp~t~~L~~~l~~iq~ 448 (462)
++||.+|||+|+|||+++|+||.+| +++.+ .. +++|++.|.+...
T Consensus 224 ~~el~~adevf~~ns~~~v~PV~~i--d~~~~--~~-----t~~l~~~y~~~~~ 268 (272)
T 3lul_A 224 KKRIEDADAVFLTNSLQGIRRVLSL--DNIIF--EV-----NHPIIDKLIFLLN 268 (272)
T ss_dssp HHHHHTCSEEEEEETTTEEEEEEEE--TTEEC--CC-----CCHHHHHHHHHHH
T ss_pred HHHHhhCCEEEEEcCchhEEEEEEE--CCEEc--ch-----HHHHHHHHHHHHh
Confidence 9999999999999999999999999 57765 21 7888888876543
No 14
>3sno_A Hypothetical aminotransferase; D-aminoacid aminotransferase-like PLP-dependent enzymes, STR genomics; HET: MSE; 1.60A {Corynebacterium glutamicum}
Probab=100.00 E-value=3.4e-52 Score=420.35 Aligned_cols=265 Identities=22% Similarity=0.331 Sum_probs=200.3
Q ss_pred eeec---Cee--ccCCcceeCCCCccccccceEEEEEEEEEeCCCeEeecChHhHHHHHHHHHhhcCCCCCCHHHHHHHH
Q 012487 158 NFSH---GIL--TRFGRLEMNPSSGILNYGQGVFEGLKAYRTEDGRILLFRPEQNALRMQMGADRLRMPSPTIEQFVDAV 232 (462)
Q Consensus 158 ~W~n---g~i--vp~~~~~l~~~d~~l~YG~gvFEgmkay~~~dG~i~lFr~d~Hl~RL~~SA~~L~mp~~~~e~l~~~I 232 (462)
.|.| |++ +|.+++.|++.|++|+||||||||||+| +|+ +|++++|++||.+||++|+|+.|+.+++.+++
T Consensus 17 v~~n~~~G~~~~~~~~~a~i~~~Drg~~yGdgvFEtirv~---~G~--~~~l~~Hl~RL~~Sa~~L~i~~p~~~~l~~~i 91 (315)
T 3sno_A 17 LIVEPYGGSIRQQNPNLPMVFWDDAALTRGDGIFETLLIR---DGH--ACNVRRHGERFKASAALLGLPEPILEDWEKAT 91 (315)
T ss_dssp EEECSTTCCEEEECTTSCCCCTTBTTTTTCCEEEEEEEEE---TTE--ETTHHHHHHHHHHHHHHHTCCCCCHHHHHHHH
T ss_pred EEEECCCCeEEEeeHHHCcccccchHhhcCCEeEEEEEEE---CCE--ECCHHHHHHHHHHHHHHhCCCCcCHHHHHHHH
Confidence 4889 999 9999999999999999999999999999 676 78999999999999999999988899999999
Q ss_pred HHHHHHcCCcCCCCCCcceEEEEEEeccCCcccccCCCCcEEEEEEeccCCCC----CCceeEEEeeee-----------
Q 012487 233 KHTVVANKQWVPPPGKGSLYIRPLLMGSGPVLGATPAPDYTFLAFASPVGNYH----KGYLNLVVEEKF----------- 297 (462)
Q Consensus 233 ~~lv~~n~~~vP~~~~g~lyIRp~~~g~~~~lGv~p~~~~~~~I~~~P~~~y~----~~~v~l~i~~~~----------- 297 (462)
+++++.+. +..+.++.|||++++++.+..| .++++|++.|+++++ .+|+++.+++..
T Consensus 92 ~~~v~~~~---~~n~~~~~~iRl~vtrG~~~~g-----~p~~~v~~~p~~~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~ 163 (315)
T 3sno_A 92 QMGIESWY---SHPNAGEASCTWTLSRGRSSTG-----LASGWLTITPVSSDKLAQREHGVSVMTSSRGYSIDTGLPGIG 163 (315)
T ss_dssp HHHHHHHH---TC--CCCEEEEEEEECCBTTTC-----CCEEEEEEEECCHHHHHHHHHCEEEEEEEC------------
T ss_pred HHHHHhhc---ccCCCCCEEEEEEEEeCCCCCC-----CCEEEEEEEECCCcchhhhcCCEEEEEecccccccccccccc
Confidence 99998732 1111257899999886443333 357889999988654 278998887621
Q ss_pred -----------eecCCCCCCCCCcccccccchHHHHHHHHCCCCeEEEEeccCCCEEEeeCceeEEEEeCCEEEccCCCC
Q 012487 298 -----------YRAFPGGTGGVKAIVNYSTVFKPVAEAKAKGFSDVLFLDVKTAKYIEEVSTSNIFFLKGNVISTPATDG 366 (462)
Q Consensus 298 -----------~Ra~p~g~g~~Kt~gNYa~~l~a~~eA~~~G~ddvL~LD~~~~g~V~E~stsNiF~v~~~~liTPpLs~ 366 (462)
.|..|..++++|++ ||+.+++++++|+++|+||+||+|. +| |+|++++|||+++|++|+|||++.
T Consensus 164 ~~~r~~~s~~~~~~~p~~l~~~Kt~-nyl~~vla~~~A~~~G~de~l~l~~--~G-v~E~s~sN~f~~~~g~l~TPp~~~ 239 (315)
T 3sno_A 164 KATRGELSKVERTPAPWLTVGAKTL-AYAANMAALRYAKSNGFDDVIFTDG--DR-VLEGATSTVVSFKGDKIRTPSPGG 239 (315)
T ss_dssp ------------------------------------------CEEEEEEET--TE-EEEESSSEEEEEETTEEEEECCC-
T ss_pred ccccccccccccccCcccccCcchh-ccHHHHHHHHHHHHcCCCEEEEEeC--CC-cEEcCCeeEEEEECCEEEcCCCCC
Confidence 12345567899997 9999999999999999999999996 79 999999999999999999999999
Q ss_pred CCccchHHHHHHHHHHHcCCcEEEEEeChhhhhccceeEEEecccceEEeEEEEECCeEEEcCCCchHHHHHHHHHHHH
Q 012487 367 TILPGITRKSVIEIAQILGYQVEERAVAVEELFDSEEVFCTGTAMVVNPVNSITYQGKRIEYKTGPETVAQKLYEMLVG 445 (462)
Q Consensus 367 ~ILpGITR~siLela~~~G~~V~Er~I~~~eL~~adEvF~tgTa~gI~PV~~I~~~~~~i~~~~~~gp~t~~L~~~l~~ 445 (462)
++|+||||+.||++|+++|++|+|+.|+++||.+|||+|+|||+++|+||.+| +++.+ + .++++++|++.|..
T Consensus 240 ~iL~GitR~~ll~~a~~~g~~v~e~~i~~~eL~~adevfl~ns~~gv~pV~~i--d~~~~--~--~~~~~~~l~~~~~~ 312 (315)
T 3sno_A 240 DILPGTTQAALFAHATEKGWRCKEKDLSIDDLFGADSVWLVSSVRGPVRVTRL--DGHKL--R--KPDNEKEIKALITK 312 (315)
T ss_dssp -----HHHHHHHHHHHHTTCEEEEECCBHHHHHHSSEEEEEETTTEEEEEEEE--SSSCC--C--CCTTHHHHHHHHHH
T ss_pred CcChhHHHHHHHHHHHHcCCEEEEEECCHHHHHhCCeeEEEcCcccEEEEEEE--CCEEC--C--CChHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 57665 2 57899999998876
No 15
>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831, putative branched-chain amino acid aminotransferase; HET: PLP CIT; 2.15A {Thermotoga maritima MSB8}
Probab=100.00 E-value=1.6e-52 Score=416.89 Aligned_cols=271 Identities=24% Similarity=0.286 Sum_probs=236.5
Q ss_pred ceEEEEEccCceeecCeeccCCcceeCCCCccccccceEEEEEEEEEeCCCeEeecChHhHHHHHHHHHhhcCCCCC-CH
Q 012487 147 YMYVMKCSKEKNFSHGILTRFGRLEMNPSSGILNYGQGVFEGLKAYRTEDGRILLFRPEQNALRMQMGADRLRMPSP-TI 225 (462)
Q Consensus 147 hm~~~~~~~~~~W~ng~ivp~~~~~l~~~d~~l~YG~gvFEgmkay~~~dG~i~lFr~d~Hl~RL~~SA~~L~mp~~-~~ 225 (462)
|+-+.-|. |.+|++++..++.+++.|++| |+|||||||+| +|+ +|++++|++||.+||++|+|+.+ +.
T Consensus 10 ~~~~~~~~----~~~~~~~~~~~~~i~~~d~g~--G~gvFEtir~~---~G~--~~~l~~Hl~RL~~Sa~~l~~~~p~~~ 78 (285)
T 3csw_A 10 HHHVLIWW----RGKFRRADEISLDFSLFEKSL--QGAVYETLRTY---SRA--PFAAYKHYTRLKRSADFFNLPLSLSF 78 (285)
T ss_dssp --CCEEEE----TTEEEESSEEEEEHHHHHHHT--TCCEEEEEEEE---TTE--ETTHHHHHHHHHHHHHTTTCCCSSCH
T ss_pred cceEEEEE----ccCceEcccccCEeCCccccc--ceeeEEEEEEE---CCE--ECCHHHHHHHHHHHHHHhCCCCCCCH
Confidence 44455675 999999999999999999999 99999999999 676 79999999999999999999965 89
Q ss_pred HHHHHHHHHHHHHcCCcCCCCCCcceEEEEEEeccCCcccccCCCCcEEEEEEeccCCCC-CCceeEEEeeeeeecCCC-
Q 012487 226 EQFVDAVKHTVVANKQWVPPPGKGSLYIRPLLMGSGPVLGATPAPDYTFLAFASPVGNYH-KGYLNLVVEEKFYRAFPG- 303 (462)
Q Consensus 226 e~l~~~I~~lv~~n~~~vP~~~~g~lyIRp~~~g~~~~lGv~p~~~~~~~I~~~P~~~y~-~~~v~l~i~~~~~Ra~p~- 303 (462)
+++.+++.++++.+. +..|||+++... .++++|.+.|+++++ .+++++.+++ +.|..+.
T Consensus 79 ~~l~~~i~~~~~~~~--------~~~~iR~~v~~~----------~~~~~i~~~p~~~~~~~~~~~l~~~~-~~~~~~~~ 139 (285)
T 3csw_A 79 DEFTKVLKAGADEFK--------QEVRIKVYLFPD----------SGEVLFVFSPLNIPDLETGVEVKISN-VRRIPDLS 139 (285)
T ss_dssp HHHHHHHHHHHTTCS--------SCEEEEEEECTT----------TCCEEEEEEECCCCCCTTCEEEEECS-SCCCCTTT
T ss_pred HHHHHHHHHHHHhhC--------CCeEEEEEEEcC----------CCEEEEEEEeCCCccccCCeEEEEEe-EEecCCCC
Confidence 999999999998663 247999988321 125888999998875 4799999875 4443222
Q ss_pred CCCCCCcccccccchHHHHHHHHCCCCeEEEEeccCCCEEEeeCceeEEEEeCCEEEccCCCCCCccchHHHHHHHHHHH
Q 012487 304 GTGGVKAIVNYSTVFKPVAEAKAKGFSDVLFLDVKTAKYIEEVSTSNIFFLKGNVISTPATDGTILPGITRKSVIEIAQI 383 (462)
Q Consensus 304 g~g~~Kt~gNYa~~l~a~~eA~~~G~ddvL~LD~~~~g~V~E~stsNiF~v~~~~liTPpLs~~ILpGITR~siLela~~ 383 (462)
.+..+|++ ||+.+++++++|++ +||+||+|. +|+|+|++++|||+++||+|+||+++.++|+||||+.||++|++
T Consensus 140 ~~~~~Kt~-~~l~~~la~~~A~~--~de~L~ld~--~G~V~Egs~sNif~v~~g~l~TP~l~~~iL~GitR~~ll~~a~~ 214 (285)
T 3csw_A 140 TPPALKIT-GRTDIVLARREIVD--CYDVILLGL--NGQVCEGSFSNVFLVKEGKLITPSLDSGILDGITRENVIKLAKS 214 (285)
T ss_dssp SCTTCCBT-TCHHHHHHHTTCSS--SSEEEEECT--TSBEEEESSSEEEEEETTEEEEECGGGTCCCCHHHHHHHHHHHH
T ss_pred CCCccchh-ccHHHHHHHHHHHh--CCeEEEECC--CCcEEEcCceEEEEEECCEEEeCCCCCCccCCHHHHHHHHHHHH
Confidence 34799998 69999999888876 999999996 79999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEEeChhhhhccceeEEEecccceEEeEEEEECCeEEEcCCCchHHHHHHHHHHHHhhccCCCCCCCCe
Q 012487 384 LGYQVEERAVAVEELFDSEEVFCTGTAMVVNPVNSITYQGKRIEYKTGPETVAQKLYEMLVGIQTGRIEDKMGWT 458 (462)
Q Consensus 384 ~G~~V~Er~I~~~eL~~adEvF~tgTa~gI~PV~~I~~~~~~i~~~~~~gp~t~~L~~~l~~iq~G~~~d~~gW~ 458 (462)
+|++|+|++|+++||.+|||+|+|||+++|+||.+| +++.+ .++.+||++++|+++|.++|+|+. +||+
T Consensus 215 ~g~~v~E~~i~~~dL~~adevfltns~~gv~PV~~i--d~~~~-~~g~~g~~t~~L~~~~~~~~~~~~---~~w~ 283 (285)
T 3csw_A 215 LEIPVEERVVWVWELFEADEMFLTHTSAGVVPVRRL--NEHSF-FEEEPGPVTATLMENFEPFVLNLE---ENWV 283 (285)
T ss_dssp TTCCEEEECCBHHHHHTCSEEEEEETTTEEEEEEEE--TTEES-CSSSCCHHHHHHHHHHHHHHHTCG---GGTT
T ss_pred CCCeEEEEeCCHHHHhhCCEEEEecCcceEEEEEEE--CCEEC-CCCCCCHHHHHHHHHHHHHHhCcC---CCCC
Confidence 999999999999999999999999999999999999 57765 345589999999999999999988 5896
No 16
>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor, pyridoxal enzyme, structural NPPSFA; HET: PLP PGE; 1.93A {Thermus thermophilus}
Probab=100.00 E-value=2.4e-46 Score=364.71 Aligned_cols=226 Identities=22% Similarity=0.231 Sum_probs=194.6
Q ss_pred eeecCeeccCCcceeCCCCccccc-cceEEEEEEEEEeCCCeEeecChHhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHH
Q 012487 158 NFSHGILTRFGRLEMNPSSGILNY-GQGVFEGLKAYRTEDGRILLFRPEQNALRMQMGADRLRMPSPTIEQFVDAVKHTV 236 (462)
Q Consensus 158 ~W~ng~ivp~~~~~l~~~d~~l~Y-G~gvFEgmkay~~~dG~i~lFr~d~Hl~RL~~SA~~L~mp~~~~e~l~~~I~~lv 236 (462)
.|.||+.. +++.|++|+| |+|+|||||+| +|+ +|++++|++||.+||++|+|+.+..+.+.+.+.+++
T Consensus 2 ~~~nG~~~------~~~~d~g~~y~G~gvFEtir~~---~G~--~~~l~~Hl~RL~~Sa~~l~~~~p~~~~l~~~i~~~~ 70 (246)
T 2zgi_A 2 RLLNGTPL------ALALPEAFLYHGASVFTTLRAE---GGR--PLWLEEHLARLRRHALALGLSYPGDEAFLEDLEALL 70 (246)
T ss_dssp EEETTEEC------CCSSCHHHHHSCCCEEEEEEEE---TTE--ETTHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHT
T ss_pred EEECCccc------CCCccCcccccCeeEEEEEEEE---CCE--eCCHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 38899855 3899999999 99999999999 676 799999999999999999999764488999999998
Q ss_pred HHcCCcCCCCCCcceEEEEEEeccCCcccccCCCCcEEEEEEeccCCCCCCceeEEEeeeeeecCCCCCCCCCccccccc
Q 012487 237 VANKQWVPPPGKGSLYIRPLLMGSGPVLGATPAPDYTFLAFASPVGNYHKGYLNLVVEEKFYRAFPGGTGGVKAIVNYST 316 (462)
Q Consensus 237 ~~n~~~vP~~~~g~lyIRp~~~g~~~~lGv~p~~~~~~~I~~~P~~~y~~~~v~l~i~~~~~Ra~p~g~g~~Kt~gNYa~ 316 (462)
+.|.. .+.+|||+++++++..+|+.|.+ .+...++.+++++.+++. |..|. ++.+|+. ||+.
T Consensus 71 ~~~~~------~~~~~vR~~v~~g~~~~~~~p~~--------~~~~~~~~~g~~l~~~~~--r~~~~-~~~~Kt~-n~~~ 132 (246)
T 2zgi_A 71 RAFPK------APCLRLRFTVGEGVRLSEARPYA--------PLPLSLYREGVRVRLTGY--RVHPD-LARYKTG-NYLP 132 (246)
T ss_dssp TSCTT------CSEEEEEEEEETTEEEEEEEECC--------CCCTHHHHHCBCEEEEEE--ECCTT-TTTSCBS-CCHH
T ss_pred HhcCC------CCCEEEEEEEECCCCccCcCcCC--------CCchhHhhcCeEEEEecc--cCCCC-Cccchhh-hhHH
Confidence 76621 25789999998655444442211 011112236899998863 78787 8899998 8999
Q ss_pred chHHHHHHHHCCCCeEEEEeccCCCEEEeeCceeEEEEeCCEEEccCCCCCCccchHHHHHHHHHHHcCCcEEEEEeChh
Q 012487 317 VFKPVAEAKAKGFSDVLFLDVKTAKYIEEVSTSNIFFLKGNVISTPATDGTILPGITRKSVIEIAQILGYQVEERAVAVE 396 (462)
Q Consensus 317 ~l~a~~eA~~~G~ddvL~LD~~~~g~V~E~stsNiF~v~~~~liTPpLs~~ILpGITR~siLela~~~G~~V~Er~I~~~ 396 (462)
+++++++|+++|+||+||+|. +|+|+|++++|||+++||+|+|| .++|+||||+.||++|+++|++|+|++|+++
T Consensus 133 ~~~a~~~A~~~g~de~l~ld~--~G~v~Egs~sNif~v~~g~l~TP---~~iL~GitR~~ll~~a~~~g~~v~E~~i~~~ 207 (246)
T 2zgi_A 133 YRLALEEARKEGAFEGLLLDA--FGHVVDGSRTSPLLFREGTLYLL---EGGLEGITREKVAEAARGLGLRVERGLFRPE 207 (246)
T ss_dssp HHHHHHHHHTTTCSEEEEECT--TSCEEEESSSEEEEEETTEEEEE---CSSCCCHHHHHHHHHHHHTTCEEEEECCCGG
T ss_pred HHHHHHHHHHcCCCEEEEECC--CCCEEEcCCeEEEEEECCEEECC---CCccCcHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence 999999999999999999996 79999999999999999999999 7899999999999999999999999999999
Q ss_pred hhhccceeEEEecccceEEeEEE
Q 012487 397 ELFDSEEVFCTGTAMVVNPVNSI 419 (462)
Q Consensus 397 eL~~adEvF~tgTa~gI~PV~~I 419 (462)
||.+ |+|+|||+++|+||.+|
T Consensus 208 dL~~--evfltns~~gi~pV~~i 228 (246)
T 2zgi_A 208 GLRG--HLLLAGSGVGLLPVRPP 228 (246)
T ss_dssp GCCS--EEEEEETTTEEEEBSSC
T ss_pred HHHh--hHeeecChhheEEEEEE
Confidence 9998 99999999999999998
No 17
>3qqm_A MLR3007 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, transferase; HET: LLP; 2.30A {Mesorhizobium loti}
Probab=100.00 E-value=1e-41 Score=327.63 Aligned_cols=206 Identities=17% Similarity=0.175 Sum_probs=184.0
Q ss_pred cccceEEEEEEEEEeCCCeEeecChHhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHcCCcCCCCCCcceEEEEEEec
Q 012487 180 NYGQGVFEGLKAYRTEDGRILLFRPEQNALRMQMGADRLRMPSPTIEQFVDAVKHTVVANKQWVPPPGKGSLYIRPLLMG 259 (462)
Q Consensus 180 ~YG~gvFEgmkay~~~dG~i~lFr~d~Hl~RL~~SA~~L~mp~~~~e~l~~~I~~lv~~n~~~vP~~~~g~lyIRp~~~g 259 (462)
.-|+|+|||||+| .+|+ +|++++|++||.+||++|+||. +.+++.+.+.++++ +. .+.+|||+++..
T Consensus 13 ~~g~glFEtir~~--~~G~--~~~l~~Hl~RL~~Sa~~l~~~~-~~~~l~~~i~~~~~-~~-------~~~~~iR~~~~~ 79 (221)
T 3qqm_A 13 TADFELIETMRWQ--PGTS--FLRFDRHLARLYGSAAELGFAC-DPQRIAEVLSDALD-GA-------RTAMRTRLALAR 79 (221)
T ss_dssp TSCCEEEEEEEEE--TTTE--ETTHHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHT-TC-------CSCEEEEEEEET
T ss_pred CCCCEEEEEEEEe--cCCc--CcCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHh-cC-------CCCEEEEEEEEc
Confidence 3588999999998 3676 6899999999999999999995 78999999999986 32 357899999876
Q ss_pred cCCcccccCCCCcEEEEEEeccCCCCC-CceeEEEeeeeeecCCCCCCCCCcccccccchHHHHHHHHCCCCeEEEEecc
Q 012487 260 SGPVLGATPAPDYTFLAFASPVGNYHK-GYLNLVVEEKFYRAFPGGTGGVKAIVNYSTVFKPVAEAKAKGFSDVLFLDVK 338 (462)
Q Consensus 260 ~~~~lGv~p~~~~~~~I~~~P~~~y~~-~~v~l~i~~~~~Ra~p~g~g~~Kt~gNYa~~l~a~~eA~~~G~ddvL~LD~~ 338 (462)
++ .+.|.+.|+++++. +++++.+++ ..|..++.+..+|++ ||+.+++++++|+++|+||+||+|.
T Consensus 80 ~g-----------~~~i~~~p~~~~~~~~~~~l~~~~-~~~~~~~~~~~~Kt~-nr~~~~~a~~~a~~~g~~e~l~l~~- 145 (221)
T 3qqm_A 80 NG-----------DATASAQPYEPLAADKVWILRLAR-TRLDSQNTLLRHKTS-RRQLYTHARSEYLVTQADEVLLANE- 145 (221)
T ss_dssp TS-----------CEEEEEEECCCCCTTCCEEEEECS-CCBCTTCGGGGSCBS-CCHHHHHHHHTSCTTTCSEEEEEBT-
T ss_pred CC-----------CEEEEEEcCCCCCCCCCEEEEEee-eEecCCCcchhchhc-chHHHHHHHHHHHhcCCcEEEEECC-
Confidence 43 26788899988764 789999886 567777788999996 9999999999999999999999996
Q ss_pred CCCEEEeeCceeEEEEeC-CEEEccCCCCCCccchHHHHHHHHHHHcCCcEEEEEeChhhhhccceeEEEecccceEEeE
Q 012487 339 TAKYIEEVSTSNIFFLKG-NVISTPATDGTILPGITRKSVIEIAQILGYQVEERAVAVEELFDSEEVFCTGTAMVVNPVN 417 (462)
Q Consensus 339 ~~g~V~E~stsNiF~v~~-~~liTPpLs~~ILpGITR~siLela~~~G~~V~Er~I~~~eL~~adEvF~tgTa~gI~PV~ 417 (462)
+|+|+|++++|||++++ ++|+|||++.++|+||||+.||+++ +|+|++|+++||.+|||+|+|||+++|+||.
T Consensus 146 -~g~v~E~s~sNif~~~~~~~l~TP~~~~~~L~GitR~~ll~~~-----~v~e~~i~~~~L~~adevf~~ns~~gi~pV~ 219 (221)
T 3qqm_A 146 -RGEICEGTITNVFADFGDGVLATPRLDCGLLPGVLRAELLDEG-----RAEEAIYSYDDLKSAKALFVGNSLRGLIPAK 219 (221)
T ss_dssp -TSCEEEESSCEEEEECSSSCEEEECGGGTCCCCHHHHHHHHTT-----SEEEECCCHHHHTTCSEEEEEETTTEEEEEE
T ss_pred -CCeEEEcCceeEEEEeCCCEEECCCCccCcchHHHHHHHHhhC-----cEEEEeCCHHHHHhCCEEEEEecceeEEEEE
Confidence 79999999999999998 9999999999999999999999974 7999999999999999999999999999997
Q ss_pred E
Q 012487 418 S 418 (462)
Q Consensus 418 ~ 418 (462)
-
T Consensus 220 l 220 (221)
T 3qqm_A 220 L 220 (221)
T ss_dssp E
T ss_pred E
Confidence 4
No 18
>3ceb_A D-aminoacid aminotransferase-like PLP-dependent E; joint center for structural genomics, protein structure initiative, PSI-2, lyase; HET: LLP; 2.40A {Haemophilus somnus}
Probab=100.00 E-value=5.9e-38 Score=294.85 Aligned_cols=189 Identities=13% Similarity=0.117 Sum_probs=156.4
Q ss_pred cccceEEEEEEEEEeCCCeEeecChHhHHHHHHHHH-hhcCCC--CC-CHHHHHHHHHHHHHHcCCcCCCCCCcceEEEE
Q 012487 180 NYGQGVFEGLKAYRTEDGRILLFRPEQNALRMQMGA-DRLRMP--SP-TIEQFVDAVKHTVVANKQWVPPPGKGSLYIRP 255 (462)
Q Consensus 180 ~YG~gvFEgmkay~~~dG~i~lFr~d~Hl~RL~~SA-~~L~mp--~~-~~e~l~~~I~~lv~~n~~~vP~~~~g~lyIRp 255 (462)
+||++||||||+| +|+ +|++++|++||.+|| ++|+|| .+ +.+++.+.+. +++.+. .+.+|||+
T Consensus 2 ~~g~~vfEt~r~~---~g~--~~~l~~Hl~RL~~Sa~~~l~~~~~~~~~~~~~~~~i~-~~~~~~-------~~~~~iR~ 68 (194)
T 3ceb_A 2 MWQFPLFETILIE---QGQ--AKNISYHQQRYEKSLLKFYPKMKLQPFDLAKIIAKHT-ALFTHR-------EGLIRCRI 68 (194)
T ss_dssp CTTCCEEEEEEEE---TTE--ECSHHHHHHHHHHHHHHHSTTCCCCCCCHHHHHHTCG-GGGSCS-------SSEEEEEE
T ss_pred CCCCeEEEEEEEE---CCE--ecCHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHH-HHhhCC-------CCCEEEEE
Confidence 6999999999999 687 789999999999999 999999 43 8899999888 777654 35799998
Q ss_pred EEeccCCcccccCCCCcEEEEEEeccCCCCCCceeEEEeeeeeecCCCCCCCCCcccccccchHHHHHHHHCCCCeEEEE
Q 012487 256 LLMGSGPVLGATPAPDYTFLAFASPVGNYHKGYLNLVVEEKFYRAFPGGTGGVKAIVNYSTVFKPVAEAKAKGFSDVLFL 335 (462)
Q Consensus 256 ~~~g~~~~lGv~p~~~~~~~I~~~P~~~y~~~~v~l~i~~~~~Ra~p~g~g~~Kt~gNYa~~l~a~~eA~~~G~ddvL~L 335 (462)
++..+. + .+...|+.+ .++ +.. .....+..++.+|+. ||+ ++++.+|+++|+||+||+
T Consensus 69 ~~~~g~--~----------~~~~~p~~~---~~~---~~~-~~~~~~~~~~~~Kt~-n~~--~~~~~~A~~~g~de~l~l 126 (194)
T 3ceb_A 69 DYNHHD--Y----------VLQCFPYQQ---KVY---RTF-KPVFCDHIDYSLKFS-DRT--LLNNLLKQKEECDEIMII 126 (194)
T ss_dssp EECSSC--E----------EEEEEEECC---CCC---CCE-EEEECSSCCCSSCBS-CCH--HHHHHHGGGTTSSEEEEE
T ss_pred EEeCCc--c----------EEEEecCCC---CcE---EEE-EEecCCCcchhhccc-CHH--HHHHHHHhhCCCCEEEEE
Confidence 876531 1 223334322 222 111 122345678899986 898 678899999999999999
Q ss_pred eccCCCEEEeeCceeEEEEeCCEEEccCCCCCCccchHHHHHHHHHHHcCCcEEEEEeChhhhhccceeEEEecccce
Q 012487 336 DVKTAKYIEEVSTSNIFFLKGNVISTPATDGTILPGITRKSVIEIAQILGYQVEERAVAVEELFDSEEVFCTGTAMVV 413 (462)
Q Consensus 336 D~~~~g~V~E~stsNiF~v~~~~liTPpLs~~ILpGITR~siLela~~~G~~V~Er~I~~~eL~~adEvF~tgTa~gI 413 (462)
. +|+|+|++++|||+++|++|+||+ .++|+||||+.||+ +++|+|++|+++||.+|||+|+|||+++|
T Consensus 127 -~--~G~v~E~s~sNif~~~~g~l~TP~--~~~L~GitR~~ll~-----~~~v~e~~i~~~eL~~adevfl~ns~~gi 194 (194)
T 3ceb_A 127 -R--QGKVTDCSIGNLIFRQNNQWITPD--KPLLEGTQRAKLLE-----QKKIIAREIFFEDLAQYEEIRLINAMNGL 194 (194)
T ss_dssp -E--TTEECCCSSSEEEEEETTEEEEES--SCSSCCHHHHHHHH-----TTSSEEECCBGGGGGGCSCEEEEBTTBCC
T ss_pred -e--CCEEEEeccEEEEEEECCEEECCC--CCCcChHHHHHHHc-----CCCEEEecCCHHHHhhccEEEEEecccCC
Confidence 5 799999999999999999999999 68999999999998 58999999999999999999999999885
No 19
>4g5a_A Uncharacterized protein; immunoglobulin - like beta-sandwich, structural genomics, JO center for structural genomics, JCSG; 1.69A {Bacteroides thetaiotaomicron}
Probab=21.23 E-value=30 Score=27.51 Aligned_cols=35 Identities=29% Similarity=0.362 Sum_probs=27.7
Q ss_pred eeeeeeeecCceeccCCccccccCCCcccccccccC
Q 012487 50 YAKVDWCELGNKEVSPSSEIVNHGLSSLSLCKSFAL 85 (462)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (462)
++|++|. +|...|-|.|..+--.=.|-+||-.|--
T Consensus 6 ~~k~dw~-~qrt~vdpewlkvyvddesk~l~lnfkd 40 (99)
T 4g5a_A 6 KTKSDWV-IQRTPVDPEWLKVYVDDESKRLCLNFKD 40 (99)
T ss_dssp CEEEECG-GGGSCCCTTSEEEEEETTTTEEEEEESS
T ss_pred cchhceE-EecccCChHHeEEEEcCccceeEEeccc
Confidence 6789999 9999999999887655567777766544
Done!