RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 012487
(462 letters)
>gnl|CDD|215418 PLN02782, PLN02782, Branched-chain amino acid aminotransferase.
Length = 403
Score = 536 bits (1382), Expect = 0.0
Identities = 229/393 (58%), Positives = 291/393 (74%), Gaps = 7/393 (1%)
Query: 74 LSSLSLCKSFALSPSPQRQTMLPASDCFKRIHTKASPQSAMNDCELSNDHSDVVEEYANL 133
L S S +F S + + S D S+ +++V E A++
Sbjct: 14 LHSSSRRLNFPPPSSLSLRHSNSSVSSNPISSKAISLTRC--DAVSSSSYTEVTE-LADI 70
Query: 134 KWDELGFCLIPVDYMYVMKCSKEKNFSHGILTRFGRLEMNPSSGILNYGQGVFEGLKAYR 193
WD LGF L+P DYMY+MKC+++ FS G L RFG +E++PS+G+LNYGQG+FEGLKAYR
Sbjct: 71 DWDNLGFGLVPTDYMYIMKCNRDGEFSKGELQRFGNIELSPSAGVLNYGQGLFEGLKAYR 130
Query: 194 TEDGRILLFRPEQNALRMQMGADRLRMPSPTIEQFVDAVKHTVVANKQWVPPPGKGSLYI 253
EDG ILLFRPE+NA+RM+ GA+R+ MP+PT+EQFV+AVK TV+ANK+WVPPPGKGSLYI
Sbjct: 131 KEDGNILLFRPEENAIRMRNGAERMCMPAPTVEQFVEAVKETVLANKRWVPPPGKGSLYI 190
Query: 254 RPLLMGSGPVLGATPAPDYTFLAFASPVGNYHK---GYLNLVVEEKFYRAFPGGTGGVKA 310
RPLLMGSG VLG PAP+YTFL + SPVGNY K +NL+VE +F+RA PGGTGGVK
Sbjct: 191 RPLLMGSGAVLGLAPAPEYTFLIYVSPVGNYFKEGVAPINLIVENEFHRATPGGTGGVKT 250
Query: 311 IVNYSTVFKPVAEAKAKGFSDVLFLDVKTAKYIEEVSTSNIFFLKGNVISTPATDGTILP 370
I NY+ V K + AKAKG+SDVL+LD KY+EEVS+ NIF +K NVISTPA GTILP
Sbjct: 251 IGNYAAVLKAQSIAKAKGYSDVLYLDCVHKKYLEEVSSCNIFIVKDNVISTPAIKGTILP 310
Query: 371 GITRKSVIEIAQILGYQVEERAVAVEELFDSEEVFCTGTAMVVNPVNSITYQGKRIEY-K 429
GITRKS+I++A+ G+QVEER V V+EL +++EVFCTGTA+VV+PV SITY+GKR+ Y +
Sbjct: 311 GITRKSIIDVARSQGFQVEERNVTVDELLEADEVFCTGTAVVVSPVGSITYKGKRVSYGE 370
Query: 430 TGPETVAQKLYEMLVGIQTGRIEDKMGWTVELN 462
G TV+Q+LY +L +Q G IED M WTVEL+
Sbjct: 371 GGFGTVSQQLYTVLTSLQMGLIEDNMNWTVELS 403
>gnl|CDD|178664 PLN03117, PLN03117, Branched-chain-amino-acid aminotransferase;
Provisional.
Length = 355
Score = 519 bits (1339), Expect = 0.0
Identities = 215/337 (63%), Positives = 270/337 (80%), Gaps = 2/337 (0%)
Query: 128 EEYANLKWDELGFCLIPVDYMYVMKCSKEKNFSHGILTRFGRLEMNPSSGILNYGQGVFE 187
E+YAN+KW+ELGF L+P DYMYV KC + ++FS G + +G + ++P +GILNYGQG+FE
Sbjct: 15 EKYANVKWEELGFALVPTDYMYVAKCKQGESFSEGKIVPYGDISISPCAGILNYGQGLFE 74
Query: 188 GLKAYRTEDGRILLFRPEQNALRMQMGADRLRMPSPTIEQFVDAVKHTVVANKQWVPPPG 247
GLKAYRTEDGRI LFRP+QNALRMQ GADRL M P++EQFV+AVK TV+ANK+WVPPPG
Sbjct: 75 GLKAYRTEDGRITLFRPDQNALRMQTGADRLCMTPPSLEQFVEAVKQTVLANKKWVPPPG 134
Query: 248 KGSLYIRPLLMGSGPVLGATPAPDYTFLAFASPVGNYHKGY--LNLVVEEKFYRAFPGGT 305
KG+LYIRPLL+GSG VLG PAP+YTFL +ASPVGNYHK LNL V+ K RA GGT
Sbjct: 135 KGTLYIRPLLIGSGAVLGVAPAPEYTFLIYASPVGNYHKASSGLNLKVDHKHRRAHSGGT 194
Query: 306 GGVKAIVNYSTVFKPVAEAKAKGFSDVLFLDVKTAKYIEEVSTSNIFFLKGNVISTPATD 365
GGVK+ NYS V K + EAK+ GFSDVLFLD T K IEE+S NIF LKGN++STP T
Sbjct: 195 GGVKSCTNYSPVVKSLIEAKSSGFSDVLFLDAATGKNIEELSACNIFILKGNIVSTPPTS 254
Query: 366 GTILPGITRKSVIEIAQILGYQVEERAVAVEELFDSEEVFCTGTAMVVNPVNSITYQGKR 425
GTILPG+TRKS+ E+A+ +GYQVEER V+V+EL ++EEVFCTGTA+VV V ++T+ K+
Sbjct: 255 GTILPGVTRKSISELARDIGYQVEERDVSVDELLEAEEVFCTGTAVVVKAVETVTFHDKK 314
Query: 426 IEYKTGPETVAQKLYEMLVGIQTGRIEDKMGWTVELN 462
++Y+TG E ++ KL+ +L IQ G +EDK GW VE++
Sbjct: 315 VKYRTGEEALSTKLHLILTNIQMGVVEDKKGWMVEID 351
>gnl|CDD|177901 PLN02259, PLN02259, branched-chain-amino-acid aminotransferase 2.
Length = 388
Score = 454 bits (1168), Expect = e-158
Identities = 211/338 (62%), Positives = 272/338 (80%), Gaps = 3/338 (0%)
Query: 128 EEYANLKWDELGFCLIPVDYMYVMKCSKEKNFSHGILTRFGRLEMNPSSGILNYGQGVFE 187
+ YA+L WD LGF L P DYMYVMKCSK+ F+ G L+ +G ++++PS+G+LNYGQ ++E
Sbjct: 51 DVYADLDWDNLGFGLNPADYMYVMKCSKDGEFTQGELSPYGNIQLSPSAGVLNYGQAIYE 110
Query: 188 GLKAYRTEDGRILLFRPEQNALRMQMGADRLRMPSPTIEQFVDAVKHTVVANKQWVPPPG 247
G KAYR E+G++LLFRP+ NA+RM++GA+R+ MPSP+++QFV+AVK T +ANK+WVPP G
Sbjct: 111 GTKAYRKENGKLLLFRPDHNAIRMKLGAERMLMPSPSVDQFVNAVKQTALANKRWVPPAG 170
Query: 248 KGSLYIRPLLMGSGPVLGATPAPDYTFLAFASPVGNYHK---GYLNLVVEEKFYRAFPGG 304
KG+LYIRPLLMGSGP+LG PAP+YTF+ +ASPVGNY K LNL VEE++ RA PGG
Sbjct: 171 KGTLYIRPLLMGSGPILGLGPAPEYTFIVYASPVGNYFKEGMAALNLYVEEEYVRAAPGG 230
Query: 305 TGGVKAIVNYSTVFKPVAEAKAKGFSDVLFLDVKTAKYIEEVSTSNIFFLKGNVISTPAT 364
GGVK+I NY+ V K ++ AK++GFSDVL+LD KY+EE S+ N+F +KG ISTPAT
Sbjct: 231 AGGVKSITNYAPVLKALSRAKSRGFSDVLYLDSVKKKYLEEASSCNVFVVKGRTISTPAT 290
Query: 365 DGTILPGITRKSVIEIAQILGYQVEERAVAVEELFDSEEVFCTGTAMVVNPVNSITYQGK 424
+GTIL GITRKSV+EIA GYQV E+AV V+E+ D++EVFCTGTA+VV PV +ITYQ K
Sbjct: 291 NGTILEGITRKSVMEIASDQGYQVVEKAVHVDEVMDADEVFCTGTAVVVAPVGTITYQEK 350
Query: 425 RIEYKTGPETVAQKLYEMLVGIQTGRIEDKMGWTVELN 462
R+EYKTG E+V QKL +LVGIQTG IED GW ++N
Sbjct: 351 RVEYKTGDESVCQKLRSVLVGIQTGLIEDNKGWVTDIN 388
>gnl|CDD|178471 PLN02883, PLN02883, Branched-chain amino acid aminotransferase.
Length = 384
Score = 422 bits (1085), Expect = e-146
Identities = 207/362 (57%), Positives = 264/362 (72%), Gaps = 5/362 (1%)
Query: 103 RIHTKASPQSAMNDCELSNDHSDVVEEYANLKWDELGFCLIPVDYMYVMKCSKEKNFSHG 162
R+H + S + + + D EEYA++ WD+LGF L+ D+M+ K ++ NF G
Sbjct: 24 RMHGTKAAASVVEEHVSGAERED--EEYADVDWDKLGFSLVRTDFMFATKSCRDGNFEQG 81
Query: 163 ILTRFGRLEMNPSSGILNYGQGVFEGLKAYRTEDGRILLFRPEQNALRMQMGADRLRMPS 222
L+R+G +E+NP++GILNYGQG+ EG+KAYR EDGRILLFRPE NA+RM++GA+R+ M S
Sbjct: 82 YLSRYGNIELNPAAGILNYGQGLIEGMKAYRGEDGRILLFRPELNAMRMKIGAERMCMHS 141
Query: 223 PTIEQFVDAVKHTVVANKQWVPPPGKGSLYIRPLLMGSGPVLGATPAPDYTFLAFASPVG 282
P++ QF++ VK TV+AN++WVPPPGKGSLY+RPLL GSG LG AP+YTFL F SPV
Sbjct: 142 PSVHQFIEGVKQTVLANRRWVPPPGKGSLYLRPLLFGSGASLGVAAAPEYTFLVFGSPVQ 201
Query: 283 NYHK---GYLNLVVEEKFYRAFPGGTGGVKAIVNYSTVFKPVAEAKAKGFSDVLFLDVKT 339
NY K LNL VEE RA+ GGTGGVKAI NY V + + AK++GFSDVL+LD T
Sbjct: 202 NYFKEGTAALNLYVEEVIPRAYLGGTGGVKAISNYGPVLEVMRRAKSRGFSDVLYLDADT 261
Query: 340 AKYIEEVSTSNIFFLKGNVISTPATDGTILPGITRKSVIEIAQILGYQVEERAVAVEELF 399
K IEEVS +NIF +KGN+I TPAT GTIL GITRKS+IEIA LGY+VEER V VEEL
Sbjct: 262 GKNIEEVSAANIFLVKGNIIVTPATSGTILGGITRKSIIEIALDLGYKVEERRVPVEELK 321
Query: 400 DSEEVFCTGTAMVVNPVNSITYQGKRIEYKTGPETVAQKLYEMLVGIQTGRIEDKMGWTV 459
++EEVFCTGTA V V SIT++ R EYK G V Q+L +L+GIQTG I+D W +
Sbjct: 322 EAEEVFCTGTAAGVASVGSITFKNTRTEYKVGDGIVTQQLRSILLGIQTGSIQDTKDWVL 381
Query: 460 EL 461
++
Sbjct: 382 QI 383
>gnl|CDD|237363 PRK13357, PRK13357, branched-chain amino acid aminotransferase;
Provisional.
Length = 356
Score = 406 bits (1047), Expect = e-140
Identities = 151/343 (44%), Positives = 204/343 (59%), Gaps = 16/343 (4%)
Query: 132 NLKWDELGFCLIPVDYMYVMKCSKEKNFSHGILTRFGRLEMNPSSGILNYGQGVFEGLKA 191
+ W LGF + D+M V+ K + L +G LE++P++ +L+YGQ +FEGLKA
Sbjct: 16 AIDWANLGFGYVFTDHMVVIDYKDGK-WHDARLVPYGPLELDPAATVLHYGQEIFEGLKA 74
Query: 192 YRTEDGRILLFRPEQNALRMQMGADRLRMPSPTIEQFVDAVKHTVVANKQWVPPPGKG-S 250
YR +DG I+LFRP+ NA R+Q ADRL MP E F++AVK V A++ WVPP G+G S
Sbjct: 75 YRHKDGSIVLFRPDANAKRLQRSADRLLMPELPEELFLEAVKQLVKADRDWVPPYGEGAS 134
Query: 251 LYIRPLLMGSGPVLGATPAPDYTFLAFASPVGNYHKGYLN---LVVEEKFYRAFPGGTGG 307
LY+RP ++ + P LG PA +Y F ASPVG Y KG + + V +++ RA PGGTG
Sbjct: 135 LYLRPFMIATEPFLGVKPAEEYIFCVIASPVGAYFKGGVKPVSIWVSDEYDRAAPGGTGA 194
Query: 308 VKAIVNYSTVFKPVAEAKAKGFSDVLFLDVKTAKYIEEVSTSNIFFLKGNVISTPATDGT 367
K NY+ AEAK KG VL+LD YIEEV N FF+ + TP G+
Sbjct: 195 AKVGGNYAASLLAQAEAKEKGCDQVLYLDAVEHTYIEEVGGMNFFFITKDGTVTPPLSGS 254
Query: 368 ILPGITRKSVIEIAQILGYQVEERAVAVEELFDS------EEVFCTGTAMVVNPVNSITY 421
ILPGITR S++++A+ LG VEER V+++E E F GTA V+ P+ I Y
Sbjct: 255 ILPGITRDSLLQLAEDLGLTVEERPVSIDEWQADAASGEFTEAFACGTAAVITPIGGIKY 314
Query: 422 QGKRIEY---KTGPETVAQKLYEMLVGIQTGRIEDKMGWTVEL 461
+ K + GP V QKLY+ L GIQ G +ED GW V++
Sbjct: 315 KDKEFVIGDGEVGP--VTQKLYDELTGIQFGDVEDPHGWIVKV 355
>gnl|CDD|238798 cd01557, BCAT_beta_family, BCAT_beta_family: Branched-chain
aminotransferase catalyses the transamination of the
branched-chain amino acids leusine, isoleucine and
valine to their respective alpha-keto acids,
alpha-ketoisocaproate, alpha-keto-beta-methylvalerate
and alpha-ketoisovalerate. The enzyme requires pyridoxal
5'-phosphate (PLP) as a cofactor to catalyze the
reaction. It has been found that mammals have two foms
of the enzyme - mitochondrial and cytosolic forms while
bacteria contain only one form of the enzyme. The
mitochondrial form plays a significant role in skeletal
muscle glutamine and alanine synthesis and in interorgan
nitrogen metabolism.Members of this subgroup are widely
distributed in all three forms of life.
Length = 279
Score = 341 bits (876), Expect = e-116
Identities = 135/282 (47%), Positives = 180/282 (63%), Gaps = 6/282 (2%)
Query: 171 EMNPSSGILNYGQGVFEGLKAYRTEDGRILLFRPEQNALRMQMGADRLRMPSPTIEQFVD 230
++P++ L+YGQ VFEGLKAYRT DG+I+LFRP++NA R+ A RL +P ++E+F+D
Sbjct: 1 SLHPATHALHYGQAVFEGLKAYRTPDGKIVLFRPDENAERLNRSARRLGLPPFSVEEFID 60
Query: 231 AVKHTVVANKQWVPPPGKGSLYIRPLLMGSGPVLGATPAPDYTFLAFASPVGNYHKGYL- 289
A+K V + WVP G SLYIRP + G+ P LG +PA +Y F FASPVG Y KG
Sbjct: 61 AIKELVKLDADWVPYGGGASLYIRPFIFGTDPQLGVSPALEYLFAVFASPVGAYFKGGEK 120
Query: 290 --NLVVEEKFYRAFPGGTGGVKAIVNYSTVFKPVAEAKAKGFSDVLFLDVKTAKYIEEVS 347
+ +V F RA PGG G KA NY+ EA KG+ L+LD Y+ EV
Sbjct: 121 GVSALVSS-FRRAAPGGPGAAKAGGNYAASLLAQKEAAEKGYDQALWLDGAH-GYVAEVG 178
Query: 348 TSNIFFLKGNVISTPATDGTILPGITRKSVIEIAQILGYQVEERAVAVEELFDSEEVFCT 407
T NIFF+K + TP DG+ILPGITR S++E+A+ LG +VEER + +EL++++EVF T
Sbjct: 179 TMNIFFVKDGELITPPLDGSILPGITRDSILELARDLGIKVEERPITRDELYEADEVFAT 238
Query: 408 GTAMVVNPVNSITYQGKRIEYKTGPETVAQKLYEMLVGIQTG 449
GTA VV PV I Y+GK V +KLY++L IQ G
Sbjct: 239 GTAAVVTPVGEIDYRGKEPGEGEVGP-VTKKLYDLLTDIQYG 279
>gnl|CDD|233278 TIGR01123, ilvE_II, branched-chain amino acid aminotransferase,
group II. Among the class IV aminotransferases are two
phylogenetically separable groups of branched-chain
amino acid aminotransferase (IlvE). The last common
ancestor of the two lineages appears also to have given
rise to a family of D-amino acid aminotransferases
(DAAT). This model represents the IlvE family less
similar to the DAAT family [Amino acid biosynthesis,
Pyruvate family].
Length = 313
Score = 326 bits (837), Expect = e-109
Identities = 147/313 (46%), Positives = 195/313 (62%), Gaps = 10/313 (3%)
Query: 159 FSHGILTRFGRLEMNPSSGILNYGQGVFEGLKAYRTEDGRILLFRPEQNALRMQMGADRL 218
+ +G LT +G L ++P S +L+YGQ FEGLKAYR DG I+LFRP+ NA R++ A RL
Sbjct: 1 WHNGRLTPYGPLHLDPGSTVLHYGQECFEGLKAYRCADGSIVLFRPDANAARLRRSARRL 60
Query: 219 RMPSPTIEQFVDAVKHTVVANKQWVPPPGKG-SLYIRPLLMGSGPVLGATPAPDYTFLAF 277
MP E F++A++ V ANK WVPP G G SLY+RP ++G+ P LG PAP+Y F F
Sbjct: 61 LMPELPDELFLEALRQLVKANKDWVPPYGSGASLYLRPFVIGTEPNLGVRPAPEYLFYVF 120
Query: 278 ASPVGNYHKGYLNLV---VEEKFYRAFPGGTGGVKAIVNYSTVFKPVAEAKAKGFSDVLF 334
ASPVG Y KG L V V ++ RA PGGTG VK NY+ A+A +G V++
Sbjct: 121 ASPVGAYFKGGLAPVSIFVTTEYDRAAPGGTGAVKVGGNYAASLLAQAKAAEQGCDQVVY 180
Query: 335 LDVKTAKYIEEVSTSNIFFLKGNV-ISTPATDGTILPGITRKSVIEIAQILGYQVEERAV 393
LD YIEEV N FF+ G+ + TP G+ILPGITR S++++A+ LG +VEER +
Sbjct: 181 LDPVEHTYIEEVGAMNFFFITGDGELVTPPLSGSILPGITRDSLLQLAKDLGMEVEERRI 240
Query: 394 AVEELFDS----EEVFCTGTAMVVNPVNSITYQGKRIEYKTG-PETVAQKLYEMLVGIQT 448
++EL EEVF GTA V+ PV I + GK + + +G P V + LY+ L IQ
Sbjct: 241 DIDELKAFVEAGEEVFACGTAAVITPVGEIQHGGKEVVFASGQPGEVTKALYDELTDIQY 300
Query: 449 GRIEDKMGWTVEL 461
G ED GW VE+
Sbjct: 301 GDFEDPYGWIVEV 313
>gnl|CDD|238254 cd00449, PLPDE_IV, PyridoxaL 5'-Phosphate Dependent Enzymes class
IV (PLPDE_IV). This D-amino acid superfamily, one of
five classes of PLPDE, consists of branched-chain amino
acid aminotransferases (BCAT), D-amino acid transferases
(DAAT), and 4-amino-4-deoxychorismate lyases (ADCL).
BCAT catalyzes the reversible transamination reaction
between the L-branched-chain amino and alpha-keto acids.
DAAT catalyzes the synthesis of D-glutamic acid and
D-alanine, and ADCL converts 4-amino-4-deoxychorismate
to p-aminobenzoate and pyruvate. Except for a few
enzymes, i. e., Escherichia coli and Salmonella BCATs,
which are homohexamers arranged as a double trimer, the
class IV PLPDEs are homodimers. Homodimer formation is
required for catalytic activity.
Length = 256
Score = 245 bits (628), Expect = 6e-79
Identities = 114/271 (42%), Positives = 147/271 (54%), Gaps = 24/271 (8%)
Query: 179 LNYGQGVFEGLKAYRTEDGRILLFRPEQNALRMQMGADRLRMPSP-TIEQFVDAVKHTVV 237
L+YG GVFEGL+A + LFR +++ R+ A RL +P P E+ +A+K V
Sbjct: 4 LHYGDGVFEGLRAGK-----GRLFRLDEHLDRLNRSAKRLGLPIPYDREELREALKELVA 58
Query: 238 ANKQWVPPPGKGSLYIRPLLMGSGPVLGATPAPD--YTFLAFASPVGNYHKGY---LNLV 292
AN SLYIRPLL LG P P TF+ FASPVG Y KG + L+
Sbjct: 59 ANN-------GASLYIRPLLTRGVGGLGVAPPPSPEPTFVVFASPVGAYAKGGEKGVRLI 111
Query: 293 VEEKFYRAFPGGTGGVKAIVNYSTVFKPVAEAKAKGFSDVLFLDVKTAKYIEEVSTSNIF 352
RA PGGTG K EA G + L LD Y+ E S SN+F
Sbjct: 112 TSPDRRRAAPGGTGDAKT-GGNLNSVLAKQEAAEAGADEALLLDDNG--YVTEGSASNVF 168
Query: 353 FLKGNVISTPATDGTILPGITRKSVIEIAQILGYQVEERAVAVEELFDSEEVFCTGTAMV 412
+K + TP DG ILPGITR SVIE+A+ LG +VEER ++++EL+ ++EVF TGTA
Sbjct: 169 IVKDGELVTPPLDGGILPGITRDSVIELAKELGIKVEERPISLDELYAADEVFLTGTAAE 228
Query: 413 VNPVNSITYQGKRIEYKTGPETVAQKLYEML 443
V PV I +G + K GP V +KL E+L
Sbjct: 229 VTPVTEIDGRGI-GDGKPGP--VTRKLRELL 256
>gnl|CDD|223193 COG0115, IlvE, Branched-chain amino acid
aminotransferase/4-amino-4-deoxychorismate lyase [Amino
acid transport and metabolism / Coenzyme metabolism].
Length = 284
Score = 227 bits (580), Expect = 2e-71
Identities = 113/299 (37%), Positives = 159/299 (53%), Gaps = 25/299 (8%)
Query: 159 FSHGILTRFGRLEMNPSSGILNYGQGVFEGLKAYRTEDGRILLFRPEQNALRMQMGADRL 218
+ +G L +++ L+YG GVFE L+AY + LFR +++ R++ A RL
Sbjct: 5 WVNGELVPEEDAKLSVLDRGLHYGDGVFETLRAYNGK-----LFRLDEHLARLKRSAKRL 59
Query: 219 RMPSPTIEQFVDAVKHTVVANKQWVPPPGKGSLYIRPLLMGSGPVLGATPAPDYTFLAFA 278
+P P E+ ++ + ++A VP LYIRPL+ G G LG A + T + A
Sbjct: 60 GLPRPESEEEIELLIQLLLAKNNLVPG-----LYIRPLVRGGGGGLGVRDATEPTLIVAA 114
Query: 279 SPVGNYHKGY-----LNLVVEEKFYRAFPGGTGGVKAIVNYSTVFKPVAEAKAKGFSDVL 333
SPVG Y KG + LV+ R P G G K NY + EAKA G + L
Sbjct: 115 SPVGAYLKGGRLEKGVVLVISSPV-RRAPPGPGAAKKTGNYLSSVLAKREAKAAGADEAL 173
Query: 334 FLDVKTAKYIEEVSTSNIFFLKGN-VISTPATDGTILPGITRKSVIEIAQILGYQVEERA 392
LD Y+ E + SN+FF+KG+ V+ TP G ILPGITR S++E+A+ LG VEER
Sbjct: 174 LLDEDG--YVTEGAGSNVFFVKGDGVLVTPPLSGGILPGITRDSLLELAKELGLTVEERP 231
Query: 393 VAVEELFDSEEVFCTGTAMVVNPVNSITYQGKRIEYKTGPETVAQKLYEMLVGIQTGRI 451
+ +E+L ++EVF T TA V PV I + + GP V +KL E+L IQ G I
Sbjct: 232 ITLEDLKQADEVFLTNTAAGVTPVGLIDGR----VGQPGP--VTKKLRELLTDIQYGEI 284
>gnl|CDD|235841 PRK06606, PRK06606, branched-chain amino acid aminotransferase;
Validated.
Length = 306
Score = 161 bits (409), Expect = 6e-46
Identities = 101/295 (34%), Positives = 141/295 (47%), Gaps = 38/295 (12%)
Query: 179 LNYGQGVFEGLKAYRTEDGRILLFRPEQNALRMQMGADRLRMPSP-TIEQFVDAVKHTVV 237
L+YG GVFEG++AY T G + FR ++ R+ A LRM P ++++ ++A + V
Sbjct: 30 LHYGTGVFEGIRAYDTPKGPAI-FRLREHTKRLFNSAKILRMEIPYSVDELMEAQREVVR 88
Query: 238 ANKQWVPPPGKGSLYIRPLLMGSGPVLGATPAPDYT--FLAFASPVGNY------HKGYL 289
N S YIRPL+ LG P A P G Y KG +
Sbjct: 89 KNNL-------KSAYIRPLVFVGDEGLGVRP-HGLPTDVAIAAWPWGAYLGEEALEKG-I 139
Query: 290 NLVVEEKFYRAFPGGT-GGVKAIVNY--STVFKPVAEAKAKGFSDVLFLDVKTAKYIEEV 346
+ V + R P KA NY S + K EA+ G+ + L LDV Y+ E
Sbjct: 140 RVKVS-SWTRHAPNSIPTRAKASGNYLNSILAK--TEARRNGYDEALLLDV--EGYVSEG 194
Query: 347 STSNIFFLKGNVISTPATDGTILPGITRKSVIEIAQILGYQVEERAVAVEELFDSEEVFC 406
S NIF ++ V+ TP +IL GITR +VI +A+ LG +V ER + +EL+ ++EVF
Sbjct: 195 SGENIFIVRDGVLYTPPLTSSILEGITRDTVITLAKDLGIEVIERRITRDELYIADEVFF 254
Query: 407 TGTAMVVNPVNSI-TYQ---GKRIEYKTGPETVAQKLYEMLVGIQTGRIEDKMGW 457
TGTA V P+ + Q GKR GP + +KL I GR E W
Sbjct: 255 TGTAAEVTPIREVDGRQIGNGKR-----GP--ITEKLQSAYFDIVRGRTEKYAHW 302
>gnl|CDD|130192 TIGR01122, ilvE_I, branched-chain amino acid aminotransferase,
group I. Among the class IV aminotransferases are two
phylogenetically separable groups of branched-chain
amino acid aminotransferase (IlvE). The last common
ancestor of the two lineages appears also to have given
rise to a family of D-amino acid aminotransferases
(DAAT). This model represents the IlvE family more
strongly similar to the DAAT family [Amino acid
biosynthesis, Pyruvate family].
Length = 298
Score = 150 bits (382), Expect = 3e-42
Identities = 101/291 (34%), Positives = 147/291 (50%), Gaps = 29/291 (9%)
Query: 179 LNYGQGVFEGLKAYRTEDGRILLFRPEQNALRMQMGADRLRMPSP-TIEQFVDAVKHTVV 237
L+YG GVFEG++AY T+ G + FR +++ R+ A RM P + E+ ++A + T+
Sbjct: 21 LHYGTGVFEGIRAYDTDKGPAI-FRLKEHIQRLYDSAKIYRMEIPYSKEELMEATRETLR 79
Query: 238 ANKQWVPPPGKGSLYIRPLLMGSGPVLGATPAPDYT---FLAFASPVGNY------HKGY 288
N S YIRPL+ LG P Y +A A P G Y KG
Sbjct: 80 KN-------NLRSAYIRPLVFRGDGDLGLNPRAGYKPDVIIA-AWPWGAYLGEEALEKGI 131
Query: 289 LNLVVEEKFYRAFPGGT-GGVKAIVNYSTVFKPVAEAKAKGFSDVLFLDVKTAKYIEEVS 347
V + R P KA NY +EA+ G+ + + LDV+ Y+ E S
Sbjct: 132 DAKVSS--WRRNAPNTIPTAAKAGGNYLNSLLAKSEARRHGYDEAILLDVE--GYVAEGS 187
Query: 348 TSNIFFLKGNVISTPATDGTILPGITRKSVIEIAQILGYQVEERAVAVEELFDSEEVFCT 407
NIF +K V+ TP +ILPGITR +VI +A+ LG +V E+ ++ EEL+ ++E F T
Sbjct: 188 GENIFIVKDGVLFTPPVTSSILPGITRDTVITLAKELGIEVVEQPISREELYTADEAFFT 247
Query: 408 GTAMVVNPVNSITYQGKRI-EYKTGPETVAQKLYEMLVGIQTGRIEDKMGW 457
GTA + P+ + G++I + GP V +KL E + TG ED GW
Sbjct: 248 GTAAEITPIREV--DGRKIGNGRRGP--VTKKLQEAFFDLVTGGTEDYWGW 294
>gnl|CDD|216275 pfam01063, Aminotran_4, Aminotransferase class IV. The D-amino
acid transferases (D-AAT) are required by bacteria to
catalyze the synthesis of D-glutamic acid and D-alanine,
which are essential constituents of bacterial cell wall
and are the building block for other D-amino acids.
Despite the difference in the structure of the
substrates, D-AATs and L-ATTs have strong similarity.
Length = 231
Score = 132 bits (333), Expect = 8e-36
Identities = 69/244 (28%), Positives = 107/244 (43%), Gaps = 15/244 (6%)
Query: 202 FRPEQNALRMQMGADRLRMPSPTIEQFVDAVKHTVVANKQWVPPPGKGSLYIRPLLMGSG 261
F +++ R++ A L +IE ++ + AN GS +R L+
Sbjct: 1 FLLDEHLERLRRSAKALIGLPLSIEDLRKIIQELLEAN------GPAGSGRLRILVSRGD 54
Query: 262 PVLGATPAPDYTFLAFASPVGNYHKGYLNLVVEE--KFYRAFPGGTGGVKAIVNYSTVFK 319
G +P + + L+ + P G K V
Sbjct: 55 GGRGLSPPEGAIPIIVSLIALASSAPPRLLITVKLRLSSYPVPRPLAGHKTTNYLDNVLA 114
Query: 320 PVAEAKAKGFSDVLFLDVKTAKYIEEVSTSNIFFLKGNVISTPATDGTILPGITRKSVIE 379
+ A+ GF D L LD + E STSNIF +KG + TP + ILPGITR+++++
Sbjct: 115 ALRAAERAGFDDALLLD--EDGNVTEGSTSNIFIVKGGTLYTPPLESGILPGITRQALLD 172
Query: 380 IAQILGYQVEERAVAVEELFDSEEVFCTGTAMVVNPVNSITYQGKRIEYKTGPETVAQKL 439
+A+ LG +VEER + + +L +++E F T + V PV SI RI GP T KL
Sbjct: 173 LAKELGIEVEERPLTLADLQEADEAFLTNSLRGVTPVTSI---DGRIFGNPGPIT--AKL 227
Query: 440 YEML 443
E+L
Sbjct: 228 RELL 231
>gnl|CDD|238799 cd01558, D-AAT_like, D-Alanine aminotransferase (D-AAT_like):
D-amino acid aminotransferase catalyzes transamination
between D-amino acids and their respective alpha-keto
acids. It plays a major role in the synthesis of
bacterial cell wall components like D-alanine and
D-glutamate in addition to other D-amino acids. The
enzyme like other members of this superfamily requires
PLP as a cofactor. Members of this subgroup are found in
all three forms of life.
Length = 270
Score = 116 bits (294), Expect = 6e-30
Identities = 82/279 (29%), Positives = 129/279 (46%), Gaps = 51/279 (18%)
Query: 181 YGQGVFEGLKAYRTEDGRILLFRPEQNALRMQMGADRLRMPSP-TIEQFVDAVKHTVVAN 239
+G GV+E ++ Y +G+ F +++ R+ A LR+ P T E+ + ++ V N
Sbjct: 23 FGDGVYEVIRVY---NGKP--FALDEHLDRLYRSAKELRIDIPYTREELKELIRELVAKN 77
Query: 240 KQWVPPPGKGSLYIRPLLMGSGPVLGATPAPDYTFLAFASPVGNYHKGYLNLVVEEKFYR 299
+ G+G +YI+ + G GP P + + + +
Sbjct: 78 EG-----GEGDVYIQ-VTRGVGPRGHDFPKCVKPTVVIITQPLP--------LPPAELLE 123
Query: 300 AFPGGTGGVKAI--------------VNY--STVFKPVAEAKAKGFSDVLFLDVKTAKYI 343
GV+ I +N + + K EAK G + + LD +
Sbjct: 124 ------KGVRVITVPDIRWLRCDIKSLNLLNNVLAK--QEAKEAGADEAILLDAD--GLV 173
Query: 344 EEVSTSNIFFLKGNVISTPATDGTILPGITRKSVIEIAQILGYQVEERAVAVEELFDSEE 403
E S+SN+F +K V+ TP D ILPGITR +VIE+A+ LG VEER ++EEL+ ++E
Sbjct: 174 TEGSSSNVFIVKNGVLVTPPLDNGILPGITRATVIELAKELGIPVEERPFSLEELYTADE 233
Query: 404 VFCTGTAMVVNPVNSITYQGKRI-EYKTGPETVAQKLYE 441
VF T T V PV I G+ I + K GP V ++L E
Sbjct: 234 VFLTSTTAEVMPVVEI--DGRPIGDGKPGP--VTKRLRE 268
>gnl|CDD|181025 PRK07544, PRK07544, branched-chain amino acid aminotransferase;
Validated.
Length = 292
Score = 112 bits (283), Expect = 4e-28
Identities = 94/282 (33%), Positives = 138/282 (48%), Gaps = 41/282 (14%)
Query: 179 LNYGQGVFEGLKAYRTEDGRILLFRPEQNALRMQMGADRLRMPSP-TIEQFVDAVKHTVV 237
L+Y VFEG +AY G+I F+ +++ R++ A+ L P ++ + A K T+
Sbjct: 32 LHYASSVFEGERAY---GGKI--FKLREHSERLRRSAELLDFEIPYSVAEIDAAKKETLA 86
Query: 238 ANKQWVPPPGKGSLYIRPLLMGSGPVLGATPAPDYTFLAFAS-PVGNYH------KGYLN 290
AN G Y+RP+ ++G + + LA A+ +Y KG +
Sbjct: 87 AN-------GLTDAYVRPVAWRGSEMMGVSAQQNKIHLAIAAWEWPSYFDPEAKMKG-IR 138
Query: 291 LVVEEKFYRAFPGGTGGV--KAIVNY--STVFKPVAEAKAKGFSDVLFLDVKTAKYIEEV 346
L + + +R T KA Y T+ K AEAK G++D L LD + Y+ E
Sbjct: 139 LDIAK--WRRPDPETAPSAAKAAGLYMICTISKHAAEAK--GYADALMLDYR--GYVAEA 192
Query: 347 STSNIFFLKGNVISTPATDGTILPGITRKSVIEIAQILGYQVEERAVAVEELFDSEEVFC 406
+ +NIFF+K VI TP D L GITR++VIE+A+ G +V ER + EEL E F
Sbjct: 193 TGANIFFVKDGVIHTPTPD-CFLDGITRQTVIELAKRRGIEVVERHIMPEELAGFSECFL 251
Query: 407 TGTAMVVNPVNSITYQGKRIEYKTGPETVAQKL---YEMLVG 445
TGTA V PV+ I EY+ P + + L YE LV
Sbjct: 252 TGTAAEVTPVSEIG------EYRFTPGAITRDLMDDYEALVR 287
>gnl|CDD|238800 cd01559, ADCL_like, ADCL_like: 4-Amino-4-deoxychorismate lyase: is
a member of the fold-type IV of PLP dependent enzymes
that converts 4-amino-4-deoxychorismate (ADC) to
p-aminobenzoate and pyruvate. Based on the information
available from the crystal structure, most members of
this subgroup are likely to function as dimers. The
enzyme from E.Coli, the structure of which is available,
is a homodimer that is folded into a small and a larger
domain. The coenzyme pyridoxal 5; -phosphate resides at
the interface of the two domains that is linked by a
flexible loop. Members of this subgroup are found in
Eukaryotes and bacteria.
Length = 249
Score = 107 bits (270), Expect = 8e-27
Identities = 72/258 (27%), Positives = 109/258 (42%), Gaps = 51/258 (19%)
Query: 181 YGQGVFEGLKAYRTEDGRILLFRPEQNALRMQMGADRLRMPSPTIEQFVDAVKHTVVANK 240
YG GVFE ++A DGR+ L R++ A RL +P P + + A++ + AN
Sbjct: 6 YGDGVFETMRAL---DGRLFLLDAHLA--RLERSARRLGIPEPDLPRLRAALESLLAAN- 59
Query: 241 QWVPPPGKGSLYIRPLLM-GSGPVLGATPA-PDYTFLAFASPVGNYHKGYLNLVVEEKFY 298
+G IR +L G G A P P+
Sbjct: 60 ----DIDEG--RIRLILSRGPGGRGYAPSVCPGPALYVSVIPLP---------------- 97
Query: 299 RAFPGGTGGVKAIVNYSTVFKPV-----------------AEAKAKGFSDVLFLDVKTAK 341
GV+ I + + EA+ +G + LFLD T
Sbjct: 98 --PAWRQDGVRLITCPVRLGEQPLLAGLKHLNYLENVLAKREARDRGADEALFLD--TDG 153
Query: 342 YIEEVSTSNIFFLKGNVISTPATDGTILPGITRKSVIEIAQILGYQVEERAVAVEELFDS 401
+ E + SN+FF+K + TP+ D L GITR+ VIE+A GY V+ER + +E+L +
Sbjct: 154 RVIEGTASNLFFVKDGELVTPSLDRGGLAGITRQRVIELAAAKGYAVDERPLRLEDLLAA 213
Query: 402 EEVFCTGTAMVVNPVNSI 419
+E F T + + V PV +I
Sbjct: 214 DEAFLTNSLLGVAPVTAI 231
>gnl|CDD|236238 PRK08320, PRK08320, branched-chain amino acid aminotransferase;
Reviewed.
Length = 288
Score = 106 bits (266), Expect = 8e-26
Identities = 89/299 (29%), Positives = 128/299 (42%), Gaps = 71/299 (23%)
Query: 159 FSHGILTRFGRLEMNPSSGILNYGQGVFEGLKAYRTEDGRILLFRPEQNALRMQMGADRL 218
F HG L YG GVFEG++AY +GR+ FR +++ R+ A +
Sbjct: 22 FDHGFL----------------YGDGVFEGIRAY---NGRV--FRLKEHIDRLYDSAKAI 60
Query: 219 RMPSP-TIEQFVDAVKHTVVANKQWVPPPGKGSLYIRPLLM-GSGPVLGATP--APDYTF 274
+ P + E+ + V T+ N YIR ++ G G LG P P T
Sbjct: 61 MLEIPLSKEEMTEIVLETLRKNNL-------RDAYIRLVVSRGVGD-LGLDPRKCPKPTV 112
Query: 275 LAFASPVGNYHKGYLNLVVEEKFYRAFPGGTGGVKAIV-----NYSTVFKP--------- 320
+ A P+G Y + Y G+K I N P
Sbjct: 113 VCIAEPIGLYP---------GELY------EKGLKVITVSTRRNRPDALSPQVKSLNYLN 157
Query: 321 --VA--EAKAKGFSDVLFLDVKTAKYIEEVSTSNIFFLKGNVISTPATDGTILPGITRKS 376
+A EA G + + L+ + Y+ E + NIF +K + TP T L GITR +
Sbjct: 158 NILAKIEANLAGVDEAIMLNDE--GYVAEGTGDNIFIVKNGKLITPPTYAGALEGITRNA 215
Query: 377 VIEIAQILGYQVEERAVAVEELFDSEEVFCTGTAMVVNPVNSITYQGKRI-EYKTGPET 434
VIEIA+ LG V E + +L+ ++EVF TGTA V PV + G+ I + K GP T
Sbjct: 216 VIEIAKELGIPVREELFTLHDLYTADEVFLTGTAAEVIPVVKV--DGRVIGDGKPGPIT 272
>gnl|CDD|237362 PRK13356, PRK13356, aminotransferase; Provisional.
Length = 286
Score = 93.1 bits (232), Expect = 3e-21
Identities = 58/214 (27%), Positives = 93/214 (43%), Gaps = 40/214 (18%)
Query: 246 PGKGSLYIRPLLMG-SGPVLGATPAPDYTFLA---FASPVGN----------YHKGYLNL 291
+LYIRP+ G G P P+ T A +P+ + + L +
Sbjct: 87 DPDTALYIRPMYWAEDGFASGVAPDPESTRFALCLEEAPMPEPTGFSLTLSPFRRPTLEM 146
Query: 292 VVEEKFYRAFPGGTGGVKAIVNYSTVFKPVAEAKAKGFSDVLFLDVKTAKYIEEVSTSNI 351
+ KA Y + + EA+++GF + L LD+ + E +TSN+
Sbjct: 147 APTD------------AKAGCLYPNNARALREARSRGFDNALVLDM--LGNVAETATSNV 192
Query: 352 FFLKGNVISTPATDGTILPGITRKSVIEIAQILGYQVEERAVAVEELFDSEEVFCTGTAM 411
F +K V+ TP +GT L GITR+ VI + + G V E + E+ +++EVF TG
Sbjct: 193 FMVKDGVVFTPVPNGTFLNGITRQRVIALLREDGVTVVETTLTYEDFLEADEVFSTGNYS 252
Query: 412 VVNPVNSITYQGKRIE---YKTGPETVAQKLYEM 442
V PV R + + GP V ++ E+
Sbjct: 253 KVVPVT-------RFDDRSLQPGP--VTRRAREL 277
>gnl|CDD|236114 PRK07849, PRK07849, 4-amino-4-deoxychorismate lyase; Provisional.
Length = 292
Score = 85.8 bits (213), Expect = 1e-18
Identities = 60/248 (24%), Positives = 108/248 (43%), Gaps = 29/248 (11%)
Query: 182 GQGVFEGLKAYRTEDGRILLFRPEQNALRMQMGADRLRMPSPTIEQFVDAVKHTVVANKQ 241
G GVFE L DGR + R+ A L +P P ++++ AV+ +A ++
Sbjct: 38 GDGVFETLLVR---DGRPCNLEA--HLERLARSAALLDLPEPDLDRWRRAVE---LAIEE 89
Query: 242 WVPPPGKGSL---YIRPLLMGSGPV--LGATPAPDYTFLAFASPVGNYHKGYLNLVVEEK 296
W P + +L Y R G P + +P P+ A V +++ ++
Sbjct: 90 WRAPEDEAALRLVYSRGRESGGAPTAWVTVSPVPERVARARREGV--------SVITLDR 141
Query: 297 FYRA-----FPGGTGGVKAIVNYSTVFKPVAEAKAKGFSDVLFLDVKTAKYIEEVSTSNI 351
Y + P G K ++Y+ + A +G DV+F T Y+ E TS +
Sbjct: 142 GYPSDAAERAPWLLAGAKT-LSYAVNMAALRYAARRGADDVIFTS--TDGYVLEGPTSTV 198
Query: 352 FFLKGNVISTPATDGTILPGITRKSVIEIAQILGYQVEERAVAVEELFDSEEVFCTGTAM 411
+ + TP ILPG T+ ++ E+A+ G+ E RA+ +LF ++ V+ +
Sbjct: 199 VIATDDRLLTPPPWYGILPGTTQAALFEVAREKGWDCEYRALRPADLFAADGVWLVSSVR 258
Query: 412 VVNPVNSI 419
+ V+++
Sbjct: 259 LAARVHTL 266
>gnl|CDD|183549 PRK12479, PRK12479, branched-chain amino acid aminotransferase;
Provisional.
Length = 299
Score = 77.3 bits (190), Expect = 8e-16
Identities = 71/245 (28%), Positives = 108/245 (44%), Gaps = 26/245 (10%)
Query: 181 YGQGVFEGLKAYRTEDGRILLFRPEQNALRMQMGADRLRMPSP-TIEQFVDAVKHTVVAN 239
YG GVFEG+++Y G + F +++ R+ A + + P T+++ +AV T+ N
Sbjct: 29 YGDGVFEGIRSY---GGNV--FCLKEHVKRLYESAKSILLTIPLTVDEMEEAVLQTLQKN 83
Query: 240 KQWVPPPGKGSLYIRPLLMGSGPV-LGATP----APDYTFLAFA---SPVGNYHKGYLNL 291
YIR L++ G LG P P +A P Y G +
Sbjct: 84 -------EYADAYIR-LIVSRGKGDLGLDPRSCVKPSVIIIAEQLKLFPQEFYDNGLSVV 135
Query: 292 VVEEKFYRAFPGGTGGVKAIVNYSTVFKPVAEAKAKGFSDVLFLDVKTAKYIEEVSTSNI 351
V + R P +NY EA G + L L+ + Y+ E S N+
Sbjct: 136 SVASR--RNTPDALDPRIKSMNYLNNVLVKIEAAQAGVLEALMLNQQ--GYVCEGSGDNV 191
Query: 352 FFLKGNVISTPATDGTILPGITRKSVIEIAQILGYQVEERAVAVEELFDSEEVFCTGTAM 411
F +K + TP + L GITR SVIE+ + L EER +++ ++EVF TGTA
Sbjct: 192 FVVKDGKVLTPPSYLGALEGITRNSVIELCERLSIPCEERPFTRHDVYVADEVFLTGTAA 251
Query: 412 VVNPV 416
+ PV
Sbjct: 252 ELIPV 256
>gnl|CDD|181067 PRK07650, PRK07650, 4-amino-4-deoxychorismate lyase; Provisional.
Length = 283
Score = 73.1 bits (180), Expect = 2e-14
Identities = 39/105 (37%), Positives = 59/105 (56%), Gaps = 9/105 (8%)
Query: 342 YIEEVSTSNIFFLKGNVISTPATDGTILPGITRKSVIEIAQILGYQVEERAVAVEELFDS 401
Y+ E SN+F++KG+++ TP+ + IL GITR VI++ + LG +V+E EEL +
Sbjct: 174 YVAEGIVSNLFWVKGDIVYTPSLETGILNGITRAFVIKVLEELGIEVKEGFYTKEELLSA 233
Query: 402 EEVFCTGTAMVVNPVNSI---TYQGKRIEYKTGPETVA-QKLYEM 442
+EVF T + + P+ I + GK G T Q LYEM
Sbjct: 234 DEVFVTNSIQEIVPLTRIEERDFPGKV-----GMVTKRLQNLYEM 273
>gnl|CDD|132501 TIGR03461, pabC_Proteo, aminodeoxychorismate lyase. Members of
this protein family are aminodeoxychorismate lyase (ADC
lyase), EC 4.1.3.38, the PabC protein of PABA
biosynthesis. PABA (para-aminobenzoate) is a precursor
of folate, needed for de novo purine biosynthesis. This
enzyme is a pyridoxal-phosphate-binding protein in the
class IV aminotransferase family (pfam01063)
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Folic acid].
Length = 261
Score = 72.2 bits (178), Expect = 3e-14
Identities = 36/98 (36%), Positives = 55/98 (56%), Gaps = 2/98 (2%)
Query: 322 AEAKAKGFSDVLFLDVKTAKYIEEVSTSNIFFLKGNVISTPATDGTILPGITRKSVIEIA 381
AE + + L LD T + E + +NIF+ KGN + TP + G+ R+ V+ +
Sbjct: 150 AELENSEADEALVLD--TDGNVVECTAANIFWRKGNQVFTPDLSYCGVAGVMRQHVLALL 207
Query: 382 QILGYQVEERAVAVEELFDSEEVFCTGTAMVVNPVNSI 419
LGY++EE +EEL ++EVF T + M V PVN+I
Sbjct: 208 PALGYEIEEVKAGLEELLSADEVFITNSLMGVVPVNAI 245
Score = 34.9 bits (81), Expect = 0.057
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 179 LNYGQGVFEGLKAYRTEDGRILLFRPEQNALRMQMGADRLRMPSPTIEQ 227
L YG G F + +G+I L + + R+Q A RL +P P +
Sbjct: 17 LQYGDGCFTTA---KVRNGKIELL--DLHLERLQDAAARLGIPLPDWDA 60
>gnl|CDD|180656 PRK06680, PRK06680, D-amino acid aminotransferase; Reviewed.
Length = 286
Score = 72.3 bits (178), Expect = 4e-14
Identities = 42/120 (35%), Positives = 66/120 (55%), Gaps = 9/120 (7%)
Query: 324 AKAKGFSDVLFLDVKTAKYIEEVSTSNIFFL-KGNVISTPATDGTILPGITRKSVIEIAQ 382
AK G + +D ++ E ++SN + + K + T D ILPGITR ++I++A+
Sbjct: 163 AKEAGAQEAWMVD---DGFVTEGASSNAWIVTKDGKLVTRPADNFILPGITRHTLIDLAK 219
Query: 383 ILGYQVEERAVAVEELFDSEEVFCTGTAMVVNPVNSITYQGKRI-EYKTGPETVAQKLYE 441
LG +VEER ++E + + E F T + V PV I GK+I K GP +A++L E
Sbjct: 220 ELGLEVEERPFTLQEAYAAREAFITAASSFVFPVVQI--DGKQIGNGKPGP--IAKRLRE 275
>gnl|CDD|235696 PRK06092, PRK06092, 4-amino-4-deoxychorismate lyase; Reviewed.
Length = 268
Score = 67.6 bits (166), Expect = 1e-12
Identities = 36/125 (28%), Positives = 59/125 (47%), Gaps = 12/125 (9%)
Query: 322 AEAKAKGFSDVLFLDVKTAKYIEEVSTSNIFFLKGNVISTPATDGTILPGITRKSVIEIA 381
AE + + L LD + ++ E +N+F+ KG V+ TP D + G+ R+ ++E+
Sbjct: 152 AELEQTEADEALVLD--SEGWVIECCAANLFWRKGGVVYTPDLDQCGVAGVMRQFILELL 209
Query: 382 QILGYQVEERAVAVEELFDSEEVFCTGTAMVVNPVNSITYQGKRIEYKTGPETVAQKLYE 441
GY V E ++EEL ++EVF + M V PV +I Y +G L
Sbjct: 210 AQSGYPVVEVDASLEELLQADEVFICNSLMPVWPVRAIG----ETSYSSGT------LTR 259
Query: 442 MLVGI 446
L +
Sbjct: 260 YLQPL 264
Score = 38.3 bits (90), Expect = 0.005
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 5/45 (11%)
Query: 179 LNYGQGVFEGLKAYRTEDGRILLFRPEQNALRMQMGADRLRMPSP 223
YG G F R DG++ L ++ R+Q +RL +P
Sbjct: 19 TQYGDGCFTTA---RVRDGQVSLL--SRHLQRLQDACERLAIPLD 58
>gnl|CDD|130191 TIGR01121, D_amino_aminoT, D-amino acid aminotransferase. This
enzyme is a homodimer. The pyridoxal phosphate
attachment site is the Lys at position 146 of the seed
alignment, in the motif Cys-Asp-Ile-Lys-Ser-Leu-Asn.
Specificity is broad for various D-amino acids, and
differs among members of the family; the family is
designated equivalog, but with this caveat attached
[Energy metabolism, Amino acids and amines].
Length = 276
Score = 64.0 bits (156), Expect = 2e-11
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 343 IEEVSTSNIFFLKGNVISTPATDGTILPGITRKSVIEIAQILGYQVEERAVAVEELFDSE 402
+ E S+SN++ +K V+ T + IL GITR ++ A+ G V+E EEL +++
Sbjct: 174 VTEGSSSNVYGIKDGVLYTHPANNLILNGITRMVILACAEENGIPVKEEPFTKEELLNAD 233
Query: 403 EVFCTGTAMVVNPVNSITYQGKRI-EYKTGPET 434
EVF + T + PV I G++I + K GP T
Sbjct: 234 EVFVSSTTAEITPVIEI--DGQQIGDGKPGPWT 264
>gnl|CDD|215454 PLN02845, PLN02845, Branched-chain-amino-acid aminotransferase-like
protein.
Length = 336
Score = 49.6 bits (119), Expect = 2e-06
Identities = 45/177 (25%), Positives = 82/177 (46%), Gaps = 33/177 (18%)
Query: 291 LVVEEKFYRAFPGGTGGVKAI----------------VNYSTVFKPVAEAKAKGFSDVLF 334
+V+E+ + GVK + VNY EA+ +G ++
Sbjct: 153 VVIEDTYA---QDRPEGVKVVTSSVPIKPPQFATVKSVNYLPNALSQMEAEERGAFAGIW 209
Query: 335 LDVKTAKYIEEVSTSNIFFL-KGNVISTPATDGTILPGITRKSVIEIAQILGYQ-----V 388
LD + ++ E N+ FL + P D IL G T + V+E+A L V
Sbjct: 210 LDEE--GFVAEGPNMNVAFLTNDGELVLPPFD-KILSGCTARRVLELAPRLVSPGDLRGV 266
Query: 389 EERAVAVEELFDSEEVFCTGTAMVVNPVNSITYQGKRI-EYKTGPETVAQKLYEMLV 444
++R ++VEE ++E+ G+ + V P+ +++ G+ I + K GP T+A L+++L+
Sbjct: 267 KQRKISVEEAKAADEMMLIGSGVPVLPI--VSWDGQPIGDGKVGPITLA--LHDLLL 319
>gnl|CDD|171470 PRK12400, PRK12400, D-amino acid aminotransferase; Reviewed.
Length = 290
Score = 48.5 bits (115), Expect = 3e-06
Identities = 30/97 (30%), Positives = 53/97 (54%), Gaps = 3/97 (3%)
Query: 323 EAKAKGFSDVLFLDVKTAKYIEEVSTSNIFFLKGNVISTPATDGTILPGITRKSVIEIAQ 382
+A+ KG + LF+ T + E S SN F +K + T + IL GI R+ V+ +A+
Sbjct: 164 KAERKGCKEALFVRNGT---VTEGSHSNFFLIKNGTLYTHPANHLILNGIIRQYVLSLAK 220
Query: 383 ILGYQVEERAVAVEELFDSEEVFCTGTAMVVNPVNSI 419
L V+E +V +++ ++E F TGT + + P+ +
Sbjct: 221 TLRIPVQEELFSVRDVYQADECFFTGTTIEILPMTHL 257
>gnl|CDD|236438 PRK09266, PRK09266, hypothetical protein; Provisional.
Length = 266
Score = 44.6 bits (106), Expect = 5e-05
Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 4/96 (4%)
Query: 324 AKAKGFSDVLFLDVKTAKYIEEVSTSNIFFLKGNVISTPATDGTILPGITRKSVIEIAQI 383
A+ GF D LF+D + E +T N+ F G + P LPG+T + +
Sbjct: 148 AQRAGFDDALFVDPD--GRVSEGATWNLGFWDGGAVVWP--QAPALPGVTMALLQRGLER 203
Query: 384 LGYQVEERAVAVEELFDSEEVFCTGTAMVVNPVNSI 419
LG R V + +L F V++I
Sbjct: 204 LGIPQRTRPVTLADLGRFAGAFACNAWRGQRAVSAI 239
>gnl|CDD|169002 PRK07546, PRK07546, hypothetical protein; Provisional.
Length = 209
Score = 32.6 bits (75), Expect = 0.27
Identities = 17/86 (19%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 322 AEAKAKGFSDVLFLDVKTAKYIEEVSTSNIFF-LKGNVISTPATDGTILPGITRKSVIEI 380
AE +V+ L+ + + E + +N+F G +++TP +LPG+ R +++
Sbjct: 118 AELPPAEADEVILLNERGE--VCEGTITNVFLDRGGGMLTTPPLSCGLLPGVLRAELLD- 174
Query: 381 AQILGYQVEERAVAVEELFDSEEVFC 406
+ E + V++L + ++
Sbjct: 175 ----AGRAREAVLTVDDLKSARAIWV 196
>gnl|CDD|180373 PRK06059, PRK06059, lipid-transfer protein; Provisional.
Length = 399
Score = 30.9 bits (70), Expect = 1.4
Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 18/96 (18%)
Query: 96 PASDCFKRIHTKASPQSAMNDCELSNDHSDVVEEYAN-----LKWDE-LGFCLIPVDYMY 149
PA + R+ +A + + + + E Y L W E LG C
Sbjct: 268 PAPE---RVFKDQILDAAYAEAGIGPEDLSLAEVYDLSTALELDWYEHLGLC-------- 316
Query: 150 VMKCSKEKNFSHGILTRFGRLEMNPSSGILNYGQGV 185
K E G T GR+ +NPS G+ +G+ +
Sbjct: 317 -PKGEAEALLRSGATTLGGRIPVNPSGGLACFGEAI 351
>gnl|CDD|132449 TIGR03408, urea_trans_UrtC, urea ABC transporter, permease protein
UrtC. Members of this protein family are ABC
transporter permease proteins associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 313
Score = 28.8 bits (65), Expect = 6.3
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 176 SGILNYGQGVFEGLKAY 192
+GIL+ GQGVF GL Y
Sbjct: 32 TGILSLGQGVFFGLGGY 48
>gnl|CDD|227399 COG5067, DBF4, Protein kinase essential for the initiation of DNA
replication [DNA replication, recombination, and repair
/ Cell division and chromosome partitioning].
Length = 468
Score = 28.8 bits (64), Expect = 7.1
Identities = 24/123 (19%), Positives = 37/123 (30%), Gaps = 15/123 (12%)
Query: 45 HINGEYAKVDWCELGNKEVSPSSEIVNHGLSSLSLCKSFALSPSPQRQTMLPASDCFKRI 104
H NGE A V ++ ++ S K +L P +QT I
Sbjct: 18 HNNGEEASTT----AQGHVFSKDNNCDNNNTTTSFPKKRSLERLPLQQTQHLHEKKRASI 73
Query: 105 HTKA----SPQSAMNDCEL-SNDHSDVVEEYANLK------WDELGFCLIPVDYMYVMKC 153
P+ E SN + ++EYA+ + C P Y
Sbjct: 74 KRSMKNALVPKKPYILIEDESNKYQKFLKEYASSEKPKLHLDSRTYCCAFPAFKFYKDNK 133
Query: 154 SKE 156
S +
Sbjct: 134 SGK 136
>gnl|CDD|226595 COG4110, COG4110, Uncharacterized protein involved in stress
response [General function prediction only].
Length = 200
Score = 28.3 bits (63), Expect = 7.6
Identities = 11/52 (21%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 185 VFEGLKAYRTEDGRILLFRPEQNALRMQM--GADRLRMPS-PTIEQFVDAVK 233
++EG+ ++ DG + + P+Q + Q+ G +R M + + +K
Sbjct: 120 IYEGVPSWDKTDGVVTIKVPDQPPIETQLTEGENRRTMCAIARLVNENGNIK 171
>gnl|CDD|187638 cd08933, RDH_SDR_c, retinal dehydrogenase-like, classical (c) SDR.
These classical SDRs includes members identified as
retinol dehydrogenases, which convert retinol to
retinal, a property that overlaps with 17betaHSD
activity. 17beta-dehydrogenases are a group of isozymes
that catalyze activation and inactivation of estrogen
and androgens, and include members of the short-chain
dehydrogenases/reductase family. SDRs are a functionally
diverse family of oxidoreductases that have a single
domain with a structurally conserved Rossmann fold
(alpha/beta folding pattern with a central beta-sheet),
an NAD(P)(H)-binding region, and a structurally diverse
C-terminal region. Classical SDRs are typically about
250 residues long, while extended SDRs are approximately
350 residues. Sequence identity between different SDR
enzymes are typically in the 15-30% range, but the
enzymes share the Rossmann fold NAD-binding motif and
characteristic NAD-binding and catalytic sequence
patterns. These enzymes catalyze a wide range of
activities including the metabolism of steroids,
cofactors, carbohydrates, lipids, aromatic compounds,
and amino acids, and act in redox sensing. Classical
SDRs have an TGXXX[AG]XG cofactor binding motif and a
YXXXK active site motif, with the Tyr residue of the
active site motif serving as a critical catalytic
residue (Tyr-151, human 15-hydroxyprostaglandin
dehydrogenase (15-PGDH) numbering). In addition to the
Tyr and Lys, there is often an upstream Ser (Ser-138,
15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH
numbering) contributing to the active site; while
substrate binding is in the C-terminal region, which
determines specificity. The standard reaction mechanism
is a 4-pro-S hydride transfer and proton relay involving
the conserved Tyr and Lys, a water molecule stabilized
by Asn, and nicotinamide. Extended SDRs have additional
elements in the C-terminal region, and typically have a
TGXXGXXG cofactor binding motif. Complex (multidomain)
SDRs such as ketoreductase domains of fatty acid
synthase have a GGXGXXG NAD(P)-binding motif and an
altered active site motif (YXXXN). Fungal type ketoacyl
reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.
Some atypical SDRs have lost catalytic activity and/or
have an unusual NAD(P)-binding motif and missing or
unusual active site residues. Reactions catalyzed within
the SDR family include isomerization, decarboxylation,
epimerization, C=N bond reduction, dehydratase activity,
dehalogenation, Enoyl-CoA reduction, and
carbonyl-alcohol oxidoreduction.
Length = 261
Score = 28.3 bits (63), Expect = 7.8
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 13/85 (15%)
Query: 335 LDVKTAKY---IEEVSTSNIF--FLKGNVISTPATDGTILPGITRKSVIEIAQILGYQVE 389
L V ++Y + +S NI+ + TP T TI G E+AQ+LG
Sbjct: 173 LAVDESRYGVRVNCISPGNIWTPLWEELAAQTPDTLATIKEG-------ELAQLLGRMGT 225
Query: 390 ERAVAVEELF-DSEEVFCTGTAMVV 413
E + LF +E FCTG +++
Sbjct: 226 EAESGLAALFLAAEATFCTGIDLLL 250
>gnl|CDD|240390 PTZ00376, PTZ00376, aspartate aminotransferase; Provisional.
Length = 404
Score = 28.4 bits (64), Expect = 8.2
Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 188 GLKAYRTEDGRILLFRPEQNALRM--QMGADRLRMPSPTIEQFVDAV 232
G+ AYR E+G+ + + A ++ + D+ +P ++ F++A
Sbjct: 35 GIGAYRDENGKPYVLESVRKAEKIIAEKNLDKEYLPIEGLQSFIEAA 81
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.399
Gapped
Lambda K H
0.267 0.0806 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,749,469
Number of extensions: 2338699
Number of successful extensions: 1828
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1780
Number of HSP's successfully gapped: 49
Length of query: 462
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 362
Effective length of database: 6,502,202
Effective search space: 2353797124
Effective search space used: 2353797124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.1 bits)