RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 012487
(462 letters)
>3dth_A Branched-chain amino acid aminotransferase; open twisted
alpha/beta; HET: PLP OBZ; 1.85A {Mycobacterium
smegmatis} PDB: 3dtf_A* 3dtg_A* 3jz6_A* 3ht5_A*
Length = 372
Score = 448 bits (1154), Expect = e-157
Identities = 124/369 (33%), Positives = 197/369 (53%), Gaps = 15/369 (4%)
Query: 109 SPQSAMNDCELSNDHSDVVEEYANLKWDELGFCLIPVDYMYVMKCSKEKNFSHGILTRFG 168
S + +S + + + GF D+M + + ++ + + + +G
Sbjct: 4 HHNSGPLEFTVSANTNPATDAVRESILANPGFGKYYTDHMVSIDYTVDEGWHNAQVIPYG 63
Query: 169 RLEMNPSSGILNYGQGVFEGLKAYRTEDGRILLFRPEQNALRMQMGADRLRMPSPTIEQF 228
++++PS+ +L+YGQ +FEGLKAYR DG I+ FRPE NA R+Q A RL +P E F
Sbjct: 64 PIQLDPSAIVLHYGQEIFEGLKAYRWADGSIVSFRPEANAARLQSSARRLAIPELPEEVF 123
Query: 229 VDAVKHTVVANKQWVPP-PGKGSLYIRPLLMGSGPVLGATPAPDYTFLAFASPVGNYHKG 287
+++++ + +++WVPP G+ SLY+RP ++ + P LG P+ +Y +L ASP G Y KG
Sbjct: 124 IESLRQLIAVDEKWVPPAGGEESLYLRPFVIATEPGLGVRPSNEYRYLLIASPAGAYFKG 183
Query: 288 YLN---LVVEEKFYRAFPGGTGGVKAIVNYSTVFKPVAEAKAKGFSDVLFLDVKTAKYIE 344
+ + + ++ RA PGGTG K NY+ A+A G V++LD +Y+E
Sbjct: 184 GIKPVSVWLSHEYVRASPGGTGAAKFGGNYAASLLAQAQAAEMGCDQVVWLDAIERRYVE 243
Query: 345 EVSTSNIFFLKGN----VISTPATDGTILPGITRKSVIEIAQILGYQVEERAVAVEELFD 400
E+ N+FF+ G+ + TP G++LPGITR S++++A G+ VEER + V+E
Sbjct: 244 EMGGMNLFFVFGSGGSARLVTPELSGSLLPGITRDSLLQLATDAGFAVEERKIDVDEWQK 303
Query: 401 S------EEVFCTGTAMVVNPVNSITYQGKRIEYKTG-PETVAQKLYEMLVGIQTGRIED 453
EVF GTA V+ PV+ + + G P + L + L GIQ G D
Sbjct: 304 KAGAGEITEVFACGTAAVITPVSHVKHHDGEFTIADGQPGEITMALRDTLTGIQRGTFAD 363
Query: 454 KMGWTVELN 462
GW LN
Sbjct: 364 THGWMARLN 372
>2coi_A Branched chain aminotransferase 1, cytosolic; PLP-dependent enzyme;
HET: PLP GBN; 1.90A {Homo sapiens} PDB: 2cog_A* 2coj_A*
2abj_A*
Length = 386
Score = 431 bits (1111), Expect = e-150
Identities = 119/387 (30%), Positives = 183/387 (47%), Gaps = 26/387 (6%)
Query: 99 DCFKRIHTKASPQSAMNDCELSNDHSDV-VEEYANLK----WDELGFCLIPVDYMYVMKC 153
DC + + + + + D+ V LK + L F + D+M ++
Sbjct: 3 DCSNGCSAECTGEGGSKEVVGTFKAKDLIVTPATILKEKPDPNNLVFGTVFTDHMLTVEW 62
Query: 154 SKEKNFSHGILTRFGRLEMNPSSGILNYGQGVFEGLKAYRTEDGRILLFRPEQNALRMQM 213
S E + + L ++P S L+Y +FEGLKA+R D +I LF+P N RM
Sbjct: 63 SSEFGWEKPHIKPLQNLSLHPGSSALHYAVELFEGLKAFRGVDNKIRLFQPNLNMDRMYR 122
Query: 214 GADRLRMPSPTIEQFVDAVKHTVVANKQWVPPPGKGSLYIRPLLMGSGPVLGATPAPDYT 273
A R +P E+ ++ ++ V +++WVP SLYIRP +G+ P LG
Sbjct: 123 SAVRATLPVFDKEELLECIQQLVKLDQEWVPYSTSASLYIRPTFIGTEPSLGVKKPTKAL 182
Query: 274 FLAFASPVGNYHKGY----LNLVVEEKFYRAFPGGTGGVKAIVNYSTVFKPVAEAKAKGF 329
SPVG Y ++L K+ RA+ GGTG K NY + EA G
Sbjct: 183 LFVLLSPVGPYFSSGTFNPVSLWANPKYVRAWKGGTGDCKMGGNYGSSLFAQCEAVDNGC 242
Query: 330 SDVLFLDVKTAKYIEEVSTSNIFFLKGN-----VISTPATDGTILPGITRKSVIEIAQIL 384
VL+L + I EV T N+F N ++TP DG ILPG+TR+ ++++A
Sbjct: 243 QQVLWLYGED-HQITEVGTMNLFLYWINEDGEEELATPPLDGIILPGVTRRCILDLAHQW 301
Query: 385 G-YQVEERAVAVEELFDS------EEVFCTGTAMVVNPVNSITYQGKRIEYKTGPE--TV 435
G ++V ER + +++L + E+F +GTA VV PV+ I Y+G+ I T +
Sbjct: 302 GEFKVSERYLTMDDLTTALEGNRVREMFGSGTACVVCPVSDILYKGETIHIPTMENGPKL 361
Query: 436 AQKLYEMLVGIQTGRIEDKMGWTVELN 462
A ++ L IQ GR E WT+ L+
Sbjct: 362 ASRILSKLTDIQYGREER--DWTIVLS 386
>2a1h_A Branched chain aminotransferase; fold type IV; HET: PLP GBN; 1.80A
{Homo sapiens} SCOP: e.17.1.1 PDB: 1ekp_A* 1ekv_A*
1ekf_A* 1kta_A* 1kt8_A* 2hhf_B* 2hhf_A* 2hgw_A* 2hg8_A*
2hgx_A* 2hdk_A*
Length = 365
Score = 424 bits (1092), Expect = e-147
Identities = 103/345 (29%), Positives = 168/345 (48%), Gaps = 22/345 (6%)
Query: 135 WDELGFCLIPVDYMYVMKCSKEKNFSHGILTRFGRLEMNPSSGILNYGQGVFEGLKAYRT 194
+ L F D+M +++ +K + + F L ++P+S L+Y +FEG+KA++
Sbjct: 25 GEPLVFGKTFTDHMLMVEW-NDKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKG 83
Query: 195 EDGRILLFRPEQNALRMQMGADRLRMPSPTIEQFVDAVKHTVVANKQWVPPPGKGSLYIR 254
+D ++ LFRP N RM A RL +PS + ++ ++ + +K WVP SLY+R
Sbjct: 84 KDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVR 143
Query: 255 PLLMGSGPVLGATPAPDYTFLAFASPVGNYHKGY----LNLVVEEKFYRAFPGGTGGVKA 310
P+L+G+ P LG + PVG Y G ++L+ + F RA+ GG G K
Sbjct: 144 PVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKL 203
Query: 311 IVNYSTVFKPVAEAKAKGFSDVLFLDVKTAKYIEEVSTSNIFFLKGNV-----ISTPATD 365
NY EA +G VL+L + EV T NIF + + TP +
Sbjct: 204 GGNYGPTVLVQQEALKRGCEQVLWLYGPD-HQLTEVGTMNIFVYWTHEDGVLELVTPPLN 262
Query: 366 GTILPGITRKSVIEIAQILG-YQVEERAVAVEELFDS------EEVFCTGTAMVVNPVNS 418
G ILPG+ R+S++++AQ G ++V ER + +++L + EVF +GTA V PV+
Sbjct: 263 GVILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHR 322
Query: 419 ITYQGKRIEYKTGPE--TVAQKLYEMLVGIQTGRIEDKMGWTVEL 461
I Y+ + + T + + + L IQ G W +
Sbjct: 323 ILYKDRNLHIPTMENGPELILRFQKELKEIQYGIRAH--EWMFPV 365
>1iye_A Branched-chain amino acid aminotransferase; hexamer, PLP; HET: PGU;
1.82A {Escherichia coli} SCOP: e.17.1.1 PDB: 1i1l_A*
1i1m_A* 1iyd_A* 1i1k_A* 1a3g_A*
Length = 309
Score = 179 bits (457), Expect = 4e-53
Identities = 93/294 (31%), Positives = 150/294 (51%), Gaps = 35/294 (11%)
Query: 179 LNYGQGVFEGLKAYRTEDGRILLFRPEQNALRMQMGADRLRMPSP-TIEQFVDAVKHTVV 237
L+YG VFEG++ Y + G ++FR ++ R+ A R P +I++ ++A + +
Sbjct: 30 LHYGTSVFEGIRCYDSHKG-PVVFRHREHMQRLHDSAKIYRFPVSQSIDELMEACRDVIR 88
Query: 238 ANKQWVPPPGKGSLYIRPLL-MGSGPVLGATPAPDYT--FLAFASPVGNY------HKGY 288
N S YIRPL+ +G +G P Y+ + A P G Y +G
Sbjct: 89 KNNL-------TSAYIRPLIFVGDVG-MGVNPPAGYSTDVIIAAFPWGAYLGAEALEQG- 139
Query: 289 LNLVVEEKFYRAFPGGT-GGVKAIVNY--STVFKPVAEAKAKGFSDVLFLDVKTAKYIEE 345
++ +V + RA P KA NY S + +EA+ G+ + + LD YI E
Sbjct: 140 IDAMVS-SWNRAAPNTIPTAAKAGGNYLSSLLVG--SEARRHGYQEGIALD--VNGYISE 194
Query: 346 VSTSNIFFLKGNVISTPATDGTILPGITRKSVIEIAQILGYQVEERAVAVEELFDSEEVF 405
+ N+F +K V+ TP + LPGITR ++I++A+ LG +V E+ ++ E L+ ++EVF
Sbjct: 195 GAGENLFEVKDGVLFTPPFTSSALPGITRDAIIKLAKELGIEVREQVLSRESLYLADEVF 254
Query: 406 CTGTAMVVNPVNSITYQGKRI-EYKTGPETVA-QKLYEMLVGIQTGRIEDKMGW 457
+GTA + PV S+ G ++ E + GP T Q+ + L TG EDK GW
Sbjct: 255 MSGTAAEITPVRSV--DGIQVGEGRCGPVTKRIQQAFFGLF---TGETEDKWGW 303
>3u0g_A Putative branched-chain amino acid aminotransfera; structural
genomics, seattle structural genomics center for
infectious disease; 1.90A {Burkholderia pseudomallei}
Length = 328
Score = 178 bits (455), Expect = 1e-52
Identities = 86/293 (29%), Positives = 131/293 (44%), Gaps = 34/293 (11%)
Query: 179 LNYGQGVFEGLKAYRTEDGRILLFRPEQNALRMQMGADRLRMPSP-TIEQFVDAVKHTVV 237
L+YG GVFEG++AY+T DG +FR +++ R+ A +M P E A + V
Sbjct: 52 LHYGMGVFEGVRAYKTADGGTAIFRLKEHTKRLLNSAKIFQMDVPFDQETLEAAQRDVVR 111
Query: 238 ANKQWVPPPGKGSLYIRPLL-MGSGPV-LGATPAPDYTFLAFASPVGNY------HKGYL 289
NK S Y+RP++ +GS + + A + +A A P G Y KG +
Sbjct: 112 ENKL-------ESCYLRPIIWIGSEKLGVSAKGNTIHVAIA-AWPWGAYLGEEGLAKG-I 162
Query: 290 NLVVEEKFYRAFPGGT-GGVKAIVNY--STVFKPVAEAKAKGFSDVLFLDVKTAKYIEEV 346
+ F R + KA Y S + EA A G+ + L LD Y+ E
Sbjct: 163 RVKTS-SFTRHHVNVSMVRAKASGWYVNSILAN--QEATADGYDEALLLD--VDGYVSEG 217
Query: 347 STSNIFFLKGNVISTPATDGTILPGITRKSVIEIAQILGYQVEERAVAVEELFDSEEVFC 406
S N F + + TP L GITR +VI +A+ G +V E+ + +E++ ++E F
Sbjct: 218 SGENFFLVNRGKLYTPDLAS-CLDGITRDTVITLAKEAGIEVIEKRITRDEVYTADEAFF 276
Query: 407 TGTAMVVNPVNSITYQGKRI-EYKTGPETVA-QKLYEMLVGIQTGRIEDKMGW 457
TGTA V P+ + + I GP T Q + +V G+ W
Sbjct: 277 TGTAAEVTPIREL--DNRTIGGGARGPITEKLQSAFFDVV---NGKSAKHADW 324
>2eiy_A ILVE, branched-chain amino acid aminotransferase; PLP-dependent
enzyme; HET: PLP; 1.35A {Thermus thermophilus} PDB:
1wrv_A* 2ej0_A* 2ej2_A* 2ej3_A*
Length = 308
Score = 177 bits (451), Expect = 3e-52
Identities = 100/294 (34%), Positives = 138/294 (46%), Gaps = 36/294 (12%)
Query: 179 LNYGQGVFEGLKAYRTEDGRILLFRPEQNALRMQMGADRLRMPSP-TIEQFVDAVKHTVV 237
L+YG VFEG++AY T G +FR +++ R A LRM P E+ +A+K V
Sbjct: 29 LHYGTSVFEGIRAYETAKG-PAIFRLKEHVKRFYNSAKVLRMEIPFAPEELEEAIKEVVR 87
Query: 238 ANKQWVPPPGKGSLYIRPLL-MGSGPVLGATPAPDY--TFLAFASPVGNY------HKGY 288
N S YIRPL MG+ LG P P+ + A G Y KG
Sbjct: 88 RNGY-------RSCYIRPLAWMGAK-ALGVNPLPNNPAEVMVAAWEWGAYLGEEAVRKG- 138
Query: 289 LNLVVEEKFYRAFPGGT-GGVKAIVNY--STVFKPVAEAKAKGFSDVLFLDVKTAKYIEE 345
L+ + R G K NY S + K EA A G + L LD + Y+ E
Sbjct: 139 ARLITS-SWARFPANVMPGKAKVGGNYVNSALAK--MEAVAAGADEALLLDEE--GYVAE 193
Query: 346 VSTSNIFFLKGNVISTPATDGTILPGITRKSVIEIAQILGYQVEERAVAVEELFDSEEVF 405
S N+FF++ VI L GITR SVI IA+ LGY+V+ ++L+ ++EVF
Sbjct: 194 GSGENLFFVRDGVIYALEHSV-NLEGITRDSVIRIAKDLGYEVQVVRATRDQLYMADEVF 252
Query: 406 CTGTAMVVNPVNSITYQGKRI-EYKTGPETVA-QKLYEMLVGIQTGRIEDKMGW 457
TGTA V PV+ I + I + GP + +++Y V TGR + GW
Sbjct: 253 MTGTAAEVTPVSMI--DWRPIGKGTAGPVALRLREVYLEAV---TGRRPEYEGW 301
>3lul_A 4-amino-4-deoxychorismate lyase; structural genomi center for
structural genomics, JCSG, protein structure INI PSI-2,
pyridoxal phosphate; HET: MSE LLP; 1.78A {Legionella
pneumophila}
Length = 272
Score = 166 bits (423), Expect = 1e-48
Identities = 50/246 (20%), Positives = 102/246 (41%), Gaps = 25/246 (10%)
Query: 179 LNYGQGVFEGLKAYRTEDGRILLFRPEQNALRMQMGADRLRMPSP-TIEQFVDAVKHTVV 237
+ G+G+FE ++ + + R+ A +L +P + + + + + +
Sbjct: 23 IFLGEGLFETIRVN---SSKP--SFAYMHWERLGNSARQLGIPFEISFDDWFEHLIQKIQ 77
Query: 238 ANKQWVPPPGKGSLYIRPLL-MGSGPVLGATPAPDYTFLAFAS-PVGNYHKGYLNLVVEE 295
+ I+ +L G G + L F + + L+
Sbjct: 78 KDNL-------YHGGIKAILSGGPAS-RGLAERGQVSQLIFQTFNYSIQKHP-VRLISI- 127
Query: 296 KFYRAFPGGTGGVKAIVNY--STVFKPVAEAKAKGFSDVLFLDVKTAKYIEEVSTSNIFF 353
+ R +K+ VNY + + + +A A G D LF + T ++ E + +N+F
Sbjct: 128 NWLRDKANPLYQLKS-VNYLEAIIAQ--RQAIAVGADDALFFN--TENHVTETTCANLFL 182
Query: 354 LKGNVISTPATDGTILPGITRKSVIEIAQILGYQVEERAVAVEELFDSEEVFCTGTAMVV 413
++ N++ TP + ILPGITR +I Q V+E ++ + + D++ VF T + +
Sbjct: 183 IENNILYTPRVEDGILPGITRARLISHCQQHKMSVQEISLTKKRIEDADAVFLTNSLQGI 242
Query: 414 NPVNSI 419
V S+
Sbjct: 243 RRVLSL 248
>3csw_A BCAT, putative branched-chain-amino-acid aminotransfera; TM0831,
putative branched-chain amino acid aminotransferase;
HET: PLP CIT; 2.15A {Thermotoga maritima MSB8}
Length = 285
Score = 164 bits (418), Expect = 1e-47
Identities = 71/285 (24%), Positives = 116/285 (40%), Gaps = 43/285 (15%)
Query: 179 LNYGQGVFEGLKAYRTEDGRILLFRPEQNALRMQMGADRLRMPSP-TIEQFVDAVKHTVV 237
+ V+E L+ Y F ++ R++ AD +P + ++F +K
Sbjct: 36 KSLQGAVYETLRTY---SRAP--FAAYKHYTRLKRSADFFNLPLSLSFDEFTKVLKAGAD 90
Query: 238 ANKQWVPPPGKGSLYIRPLL-MGSGPVLGATPAPDYTFLAFASPVGNYHKGYLNLVVEEK 296
KQ + I+ L SG VL F+ + + G + + +
Sbjct: 91 EFKQ--------EVRIKVYLFPDSGEVL---------FVFSPLNIPDLETG-VEVKIS-N 131
Query: 297 FYRAFPGGT-GGVKAIVNY--STVFKPVAEAKAKGFSDVLFLDVKTAKYIEEVSTSNIFF 353
R T +K + A + DV+ L + E S SN+F
Sbjct: 132 VRRIPDLSTPPALKIT-GRTDIVL----ARREIVDCYDVILLG--LNGQVCEGSFSNVFL 184
Query: 354 LKGNVISTPATDGTILPGITRKSVIEIAQILGYQVEERAVAVEELFDSEEVFCTGTAMVV 413
+K + TP+ D IL GITR++VI++A+ L VEER V V ELF+++E+F T T+ V
Sbjct: 185 VKEGKLITPSLDSGILDGITRENVIKLAKSLEIPVEERVVWVWELFEADEMFLTHTSAGV 244
Query: 414 NPVNSITYQGKRI-EYKTGPETVA-QKLYEMLVGIQTGRIEDKMG 456
PV + E + GP T + +E V E+ +G
Sbjct: 245 VPVRRL--NEHSFFEEEPGPVTATLMENFEPFV---LNLEENWVG 284
>3sno_A Hypothetical aminotransferase; D-aminoacid aminotransferase-like
PLP-dependent enzymes, STR genomics; HET: MSE; 1.60A
{Corynebacterium glutamicum}
Length = 315
Score = 164 bits (416), Expect = 4e-47
Identities = 56/289 (19%), Positives = 103/289 (35%), Gaps = 38/289 (13%)
Query: 179 LNYGQGVFEGLKAYRTEDGRILLFRPEQNALRMQMGADRLRMPSPTIEQFVDAVKHTVVA 238
L G G+FE L DG ++ R + A L +P P +E + A + +
Sbjct: 43 LTRGDGIFETLLIR---DGHA--CNVRRHGERFKASAALLGLPEPILEDWEKATQMGI-- 95
Query: 239 NKQWVPPPGKGSLYIRPLLM-GSGPVLGATPAPDYTFLAFASPVGNYHKGYLNLVVEEKF 297
+ W P G L G G + + G + +
Sbjct: 96 -ESWYSHPNAGEASCTWTLSRGRSS-TGLASGWLTITPVSSDKLAQREHGVSVMTSSRGY 153
Query: 298 --YRAFPGGTGGVKAIVNYSTVFKP------------------VAEAKAKGFSDVLFLDV 337
PG + ++ + AK+ GF DV+F D
Sbjct: 154 SIDTGLPGIGKATRGELSKVERTPAPWLTVGAKTLAYAANMAALRYAKSNGFDDVIFTD- 212
Query: 338 KTAKYIEEVSTSNIFFLKGNVISTPATDGTILPGITRKSVIEIAQILGYQVEERAVAVEE 397
+ E +TS + KG+ I TP+ G ILPG T+ ++ A G++ +E+ +++++
Sbjct: 213 --GDRVLEGATSTVVSFKGDKIRTPSPGGDILPGTTQAALFAHATEKGWRCKEKDLSIDD 270
Query: 398 LFDSEEVFCTGTAMVVNPVNSITYQGKRIEYKTGPET-VAQKLYEMLVG 445
LF ++ V+ + V + G ++ + + L +G
Sbjct: 271 LFGADSVWLVSSVRGPVRVTRL--DGHKL--RKPDNEKEIKALITKALG 315
>1i2k_A 4-amino-4-deoxychorismate lyase; pyridoxal phosphate, PABC; HET:
PLP; 1.79A {Escherichia coli} SCOP: e.17.1.1 PDB:
1et0_A* 1i2l_A*
Length = 269
Score = 149 bits (378), Expect = 5e-42
Identities = 49/271 (18%), Positives = 93/271 (34%), Gaps = 31/271 (11%)
Query: 179 LNYGQGVFEGLKAYRTEDGRILLFRPEQNALRMQMGADRLRMPSPTIEQFVDAVKHTVVA 238
+G G F + DG++ L + R+Q RL + Q +K
Sbjct: 19 TQFGDGCFTTARVI---DGKVSLL--SAHIQRLQDACQRLMISCDFWPQLEQEMKTLAAE 73
Query: 239 NKQWVPPPGKGSLYIRPLL-MGSGPV-LGATPAPDYTFLAFASPVGNYHKGYLNLVVE-- 294
+ ++ ++ GSG + T + + ++ N +
Sbjct: 74 QQNG---------VLKVVISRGSGGRGYSTLNSGPATRILSVTAYPAHYDRLRNEGITLA 124
Query: 295 -EKFYRAFPGGTGGVKAIVNY--STVFKPVAEAKAKGFSDVLFLDVKTAKYIEEVSTSNI 351
G+K + N + + + + + L LD + ++ E +N+
Sbjct: 125 LSPVRLGRNPHLAGIKHL-NRLEQVLIR--SHLEQTNADEALVLD--SEGWVTECCAANL 179
Query: 352 FFLKGNVISTPATDGTILPGITRKSVIEIAQILGYQVEERAVAVEELFDSEEVFCTGTAM 411
F+ KGNV+ TP D + GI R+ I + YQ+ E ++EE ++E+ M
Sbjct: 180 FWRKGNVVYTPRLDQAGVNGIMRQFCIRLLAQSSYQLVEVQASLEESLQADEMVICNALM 239
Query: 412 VVNPVNSITYQGKRIEYKTGPET-VAQKLYE 441
V PV + + L E
Sbjct: 240 PVMPVCAC--GDVSF--SSATLYEYLAPLCE 266
>2zgi_A Putative 4-amino-4-deoxychorismate lyase; TTHA0621, PLP cofactor,
pyridoxal enzyme, structural NPPSFA; HET: PLP PGE; 1.93A
{Thermus thermophilus}
Length = 246
Score = 148 bits (376), Expect = 5e-42
Identities = 55/245 (22%), Positives = 96/245 (39%), Gaps = 38/245 (15%)
Query: 179 LNYGQGVFEGLKAYRTEDGRILLFRPEQNALRMQMGADRLRMPSPTIEQFVDAVKHTVVA 238
L +G VF L+A GR E++ R++ A L + P E F++ ++ + A
Sbjct: 18 LYHGASVFTTLRAE---GGRP--LWLEEHLARLRRHALALGLSYPGDEAFLEDLEALLRA 72
Query: 239 NKQWVPPPGKGSLYIRPLL-MGSGP-VLGATPAPDYTFLAFASPVGNYHKGYLNLVVEEK 296
+ + +R +G G + A P P+ Y +G + + +
Sbjct: 73 FPK--------APCLRLRFTVGEGVRLSEARPYAPL-------PLSLYREG-VRVRLTG- 115
Query: 297 FYRAFPGGTGGVKAIVNY--STVFKPVAEAKAKGFSDVLFLDVKTAKYIEEVSTSNIFFL 354
YR P K NY + EA+ +G + L LD ++ + S ++
Sbjct: 116 -YRVHPD-LARYKT-GNYLPYRLAL--EEARKEGAFEGLLLD--AFGHVVDGSRTSPLLF 168
Query: 355 KGNVISTPATDGTILPGITRKSVIEIAQILGYQVEERAVAVEELFDSEEVFCTGTAMVVN 414
+ + +G L GITR+ V E A+ LG +VE E L + G+ + +
Sbjct: 169 REGTLYLL--EG-GLEGITREKVAEAARGLGLRVERGLFRPEGLRG--HLLLAGSGVGLL 223
Query: 415 PVNSI 419
PV
Sbjct: 224 PVRPP 228
>2xpf_A 4-amino-4-deoxychorismate lyase; para-aminobenzoic acid, folate
biosynthesis; HET: PLP PG4; 1.75A {Pseudomonas
aeruginosa} PDB: 2y4r_A* 2xpf_B*
Length = 292
Score = 147 bits (373), Expect = 5e-41
Identities = 53/274 (19%), Positives = 95/274 (34%), Gaps = 37/274 (13%)
Query: 179 LNYGQGVFEGLKAYRTEDGRILLFRPEQNALRMQMGADRLRMPSPTIEQFVDAVKHTVVA 238
L YG G+FE L G E++ R++ G RL +P +
Sbjct: 41 LAYGDGLFETLAVR---AGTP--RLLERHLARLEEGCRRLAIP-LDTAALRQELLAFC-- 92
Query: 239 NKQWVPPPGKGSLYIRPLLM-GSGPV-LGATPAPDYTFLAFASPVGNY-----HKGYLNL 291
G + ++ G G + SP Y +G + L
Sbjct: 93 -------AALGDGVAKLIVTRGEGLRGYAPPAEASPRRILSGSPRPAYPERHWQQG-VRL 144
Query: 292 VVEEKFYRAFPGGTGGVKAIVNY--STVFKPVAEAKAKGFSDVLFLDVKTAKYIEEVSTS 349
A G+K +N + + AE G ++ L LD + + E S
Sbjct: 145 FACR-TRLAEQPLLAGLKH-LNRLEQVLAR--AEWSDAGHAEGLMLD--VHERVVEGVFS 198
Query: 350 NIFFLKGNVISTPATDGTILPGITRKSVIEIAQILGYQVEERAVAVEELFDSEEVFCTGT 409
N+ + + P + G+ R ++E A+ +G + R V++ EL ++EVF +
Sbjct: 199 NLLLVLDGTLVAPDLRRCGVAGVMRAELLERAEGIGVPLAIRDVSMAELATADEVFLCNS 258
Query: 410 AMVVNPVNSITYQGKRIEYKTGPETVAQKLYEML 443
+ PV ++ + +KL + L
Sbjct: 259 QFGIWPVRAL--DEHVW----PVGELTRKLQDQL 286
>3daa_A D-amino acid aminotransferase; pyridoxal phosphate, transaminase;
HET: PDD; 1.90A {Bacillus SP} SCOP: e.17.1.1 PDB:
4daa_A* 3lqs_A* 1daa_A* 2daa_A* 5daa_A* 1g2w_A* 1a0g_A*
2dab_A*
Length = 277
Score = 136 bits (344), Expect = 5e-37
Identities = 63/282 (22%), Positives = 106/282 (37%), Gaps = 54/282 (19%)
Query: 179 LNYGQGVFEGLKAYRTEDGRILLFRPEQNALRMQMGADRLRMPSP-TIEQFVDAVKHTVV 237
+G GV+E +K Y +G + F ++ R+ A+++R+ P T ++F + V
Sbjct: 24 YQFGDGVYEVVKVY---NGEM--FTVNEHIDRLYASAEKIRITIPYTKDKFHQLLHELVE 78
Query: 238 ANKQWVPPPGKGSLYIRPLL-MGSGPVLGATPAPDYTFLAFASPVGNYHKGYLNLVVEEK 296
N+ + +I + G+ P + ++
Sbjct: 79 KNEL-------NTGHIYFQVTRGTSP-RAHQFPENTVKPVII-------------GYTKE 117
Query: 297 FYRAFPGGTGGVKAI--------------VNY--STVFKPVAEAKAKGFSDVLFLDVKTA 340
R GVKA +N + + K EA KG + +
Sbjct: 118 NPRPLENLEKGVKATFVEDIRWLRCDIKSLNLLGAVLAK--QEAHEKGCYEAILHR---N 172
Query: 341 KYIEEVSTSNIFFLKGNVISTPATDGTILPGITRKSVIEIAQILGYQVEERAVAVEELFD 400
+ E S+SN+F +K ++ T + IL GITR VI A + V+E E
Sbjct: 173 NTVTEGSSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALK 232
Query: 401 SEEVFCTGTAMVVNPVNSITYQGKRI-EYKTGPETVAQKLYE 441
+E+F T T + PV I GK I + K G +KL +
Sbjct: 233 MDELFVTSTTSEITPVIEI--DGKLIRDGKVGE--WTRKLQK 270
>3qqm_A MLR3007 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-biology,
transferase; HET: LLP; 2.30A {Mesorhizobium loti}
Length = 221
Score = 106 bits (267), Expect = 8e-27
Identities = 38/242 (15%), Positives = 77/242 (31%), Gaps = 33/242 (13%)
Query: 179 LNYGQGVFEGLKAYRTEDGRILLFRPEQNALRMQMGADRLRMPSPTIEQFVDAVKHTVVA 238
+ E + R + G L A R+ A L ++ + + +
Sbjct: 12 DTADFELIETM---RWQPGTSFLRFDRHLA-RLYGSAAELGFA-CDPQRIAEVLSDALDG 66
Query: 239 NKQWVPPPGKGSLYIRPLLMGSGPVLGATPAPDYTFLAFASPVGNYHKGYLNLVVEEKFY 298
+ ++ R L + A+ P Y LA L +
Sbjct: 67 AR--------TAMRTR-LALARNGDATASAQP-YEPLAADKVW--------ILRLARTR- 107
Query: 299 RAFPGGTGGVKAIVNYSTVFKPVAEAKAKGFSDVLFLDVKTAKYIEEVSTSNIFFLKGN- 357
K +E +VL + I E + +N+F G+
Sbjct: 108 LDSQNTLLRHKTS-RRQLYTHARSEYLVTQADEVLLAN--ERGEICEGTITNVFADFGDG 164
Query: 358 VISTPATDGTILPGITRKSVIEIAQILGYQVEERAVAVEELFDSEEVFCTGTAMVVNPVN 417
V++TP D +LPG+ R +++ + EE + ++L ++ +F + + P
Sbjct: 165 VLATPRLDCGLLPGVLRAELLDEG-----RAEEAIYSYDDLKSAKALFVGNSLRGLIPAK 219
Query: 418 SI 419
+
Sbjct: 220 LV 221
>3ceb_A D-aminoacid aminotransferase-like PLP-dependent E; joint center for
structural genomics, protein structure initiative,
PSI-2, lyase; HET: LLP; 2.40A {Haemophilus somnus}
Length = 194
Score = 79.0 bits (195), Expect = 3e-17
Identities = 28/235 (11%), Positives = 63/235 (26%), Gaps = 49/235 (20%)
Query: 181 YGQGVFEGLKAYRTEDGRILLFRPEQNALRMQMGADRLRMPSPTIEQFVDAVKHTVVANK 240
+ +FE + E G+ + R + + + ++A
Sbjct: 3 WQFPLFETI---LIEQGQAKNI--SYHQQRYEKSLLKFYPKMKLQPFDL----AKIIAKH 53
Query: 241 QWVPPPGKGSLYIRPLLMGSGPVLGATPAPDYTFLAF----ASPVGNYHKGYLNLVVEEK 296
+ +G + R VL P + F + K + +
Sbjct: 54 TALFTHREGLIRCRIDYNHHDYVLQCFPYQQKVYRTFKPVFCDHIDYSLK-FSD----RT 108
Query: 297 FYRAFPGGTGGVKAIVNYSTVFKPVAEAKAKGFSDVLFLDVKTAKYIEEVSTSNIFFLKG 356
+ + +++ + + + S N+ F +
Sbjct: 109 LLNN---------------------LLKQKEECDEIMII---RQGKVTDCSIGNLIFRQN 144
Query: 357 NVISTPATDGTILPGITRKSVIEIAQILGYQVEERAVAVEELFDSEEVFCTGTAM 411
N TP +L G R ++E ++ R + E+L EE+
Sbjct: 145 NQWITPDKP--LLEGTQRAKLLEQ-----KKIIAREIFFEDLAQYEEIRLINAMN 192
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.5 bits (141), Expect = 3e-09
Identities = 73/418 (17%), Positives = 125/418 (29%), Gaps = 138/418 (33%)
Query: 75 SSLSLCKSF------ALSPSPQRQT--MLPAS-DCFKR-------IHTKASPQSAMNDCE 118
+ L F + PS Q +L F+ IH A+ ND
Sbjct: 56 TPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTT 115
Query: 119 LSNDHSDVVEEYANLKWDELGFCLIPVDYMY---VMKCSKEKNFSHGILTRFGRLEMNPS 175
L ++++ Y + P D + + E N ++ FG
Sbjct: 116 LVKTK-ELIKNYITAR----IMAKRPFDKKSNSALFRAVGEGNAQ--LVAIFG------- 161
Query: 176 SGILNYGQGV----FEGLKA-YRTEDGRILLFRPEQNALRMQMGADRLRMPSPTIEQFVD 230
GQG FE L+ Y+T + L ++ A+ L S I +D
Sbjct: 162 ------GQGNTDDYFEELRDLYQT-------YHVLVGDL-IKFSAETL---SELIRTTLD 204
Query: 231 AVKH--TVVANKQWV----PPPGKGSLYIRPLLMGSGPVLGATPAPDYTFLAFASPVGNY 284
A K + +W+ P K L P+ S P++G Y + A +G +
Sbjct: 205 AEKVFTQGLNILEWLENPSNTPDKDYLLSIPI---SCPLIGVIQLAHY--VVTAKLLG-F 258
Query: 285 HKGYLNLVVEEKFYRAFPGGTGGVKAIVNYSTVFKPVAEAKAKGFSDVLFLDVKTAKYIE 344
G + G TG + +V A A A+ S F K I
Sbjct: 259 TPG--------ELRSYLKGATGHSQGLV--------TAVAIAETDSWESFFVS-VRKAIT 301
Query: 345 EVSTSNIFFLKG--------------NVISTPATDGTILP-------GITRKSVIE-IAQ 382
+ F G +++ + +P +T++ V + + +
Sbjct: 302 ------VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNK 355
Query: 383 ILGYQVEERAVAVEELFDSEEVFCTGTAMVVNPVNSITYQGKRIEYKTGPETVAQKLY 440
+ + V + S + +VV +GP Q LY
Sbjct: 356 TNSHLPAGKQVEI-----S--LVNGAKNLVV----------------SGP---PQSLY 387
Score = 41.6 bits (97), Expect = 7e-04
Identities = 35/209 (16%), Positives = 67/209 (32%), Gaps = 89/209 (42%)
Query: 303 GGTGGVKAIVNYST-VFKPVAEAKAKGFSDVLF--LDVKTAKYI----EEV--STSNIFF 353
GG G + NYS +F+ + + K K ++ +F ++ + Y + + +T
Sbjct: 1677 GGEKGKRIRENYSAMIFETIVDGKLK--TEKIFKEINEHSTSYTFRSEKGLLSATQF--- 1731
Query: 354 LKGNVIST-PATDGTILPGITRKSVIEIAQI-------------------LG-YQ----- 387
T PA + ++E A LG Y
Sbjct: 1732 -------TQPA----LT-------LMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASL 1773
Query: 388 ------------VEERAVAVEELFDSEEVFCTGTAMV-VNPVNSITYQGKRIEYKTGPET 434
V R + ++ +E+ + M+ +NP R+ + +
Sbjct: 1774 ADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINP--------GRVA-ASFSQE 1824
Query: 435 VAQKLYEMLVGIQTGRIEDKMGWTVEL-N 462
Q + E R+ + GW VE+ N
Sbjct: 1825 ALQYVVE--------RVGKRTGWLVEIVN 1845
Score = 38.1 bits (88), Expect = 0.006
Identities = 57/300 (19%), Positives = 91/300 (30%), Gaps = 130/300 (43%)
Query: 14 PSRVGSLLSKIRHQARDT-----RAVQAYEPNVDRYHI---NGEYAKVDWCELGNKEVS- 64
PS +LS I + ++ ++ P + I NG V VS
Sbjct: 335 PS---PMLS-ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV---------VSG 381
Query: 65 -PSSEIVNHGLSSLSLCKSFALSPSPQRQTMLPASD-------CFKRI----HTKASP-- 110
P S +GL+ L+L K+ A PS Q+ +P S+ F + H S
Sbjct: 382 PPQSL---YGLN-LTLRKAKA--PSGLDQSRIPFSERKLKFSNRFLPVASPFH---SHLL 432
Query: 111 QSAMNDCELSNDHSDVVEEYANLKWD--ELGFCLIPVDYMYVMKCSKEKNFSHGILTRFG 168
A + D+V+ N+ ++ ++ IPV
Sbjct: 433 VPASDLIN-----KDLVKN--NVSFNAKDIQ---IPV----------------------- 459
Query: 169 RLEMNPSSGILNYGQGVFEGLKAYRTEDGRILLFRPEQNALRMQMGADRLRMP------- 221
Y T DG L R ++ ++ +R+P
Sbjct: 460 -----------------------YDTFDGSDL--RVLSGSISERIVDCIIRLPVKWETTT 494
Query: 222 --SPT-IEQF----VDAVKHTVVANKQWVPPPGKGSLYIRPLLMGSGPVLGATPAPDYTF 274
T I F + NK G G +R ++ G+ L P DY F
Sbjct: 495 QFKATHILDFGPGGASGLGVLTHRNKD-----GTG---VRVIVAGT---LDINPDDDYGF 543
Score = 33.1 bits (75), Expect = 0.22
Identities = 47/288 (16%), Positives = 80/288 (27%), Gaps = 100/288 (34%)
Query: 128 EEYANLK-----WDE--------LGFCLIPVDYMYVMKCSKEKNF------SHGILTRFG 168
+ Y K W+ GF ++ + V+ I +
Sbjct: 1634 DLYKTSKAAQDVWNRADNHFKDTYGFSILDI----VINNPVNLTIHFGGEKGKRIRENYS 1689
Query: 169 RLEMNPSSGILNYGQGVFEGLKAYRTEDGRILLFRPEQNALR-----------MQMGADR 217
+ + +F+ + E FR E+ L M+ A
Sbjct: 1690 AMIFETIVDGKLKTEKIFKEI----NEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFE 1745
Query: 218 -LR----MPSPTI-------E-----------QFVDAVKHTVVANKQWVPPPGKGSLYIR 254
L+ +P+ E V+ VV + R
Sbjct: 1746 DLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVE--VV--------------FYR 1789
Query: 255 PLLMGSGPVLGATPAPDYTFLAFASPVGNYHKGY----LNLVVEEKFYRAFPGGTGGVKA 310
+ M +Y +A +P G + L VVE TG +
Sbjct: 1790 GMTMQVAVPRDELGRSNYGMIA-INP-GRVAASFSQEALQYVVER-----VGKRTGWLVE 1842
Query: 311 IVNY----STVFKPVA--EAKA-KGFSDVL-FLDVKTAKYIE-EVSTS 349
IVNY VA + +A ++VL F+ ++ IE + S S
Sbjct: 1843 IVNYNVENQQY---VAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLS 1887
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 49.1 bits (116), Expect = 2e-06
Identities = 40/218 (18%), Positives = 72/218 (33%), Gaps = 67/218 (30%)
Query: 55 WCELGNKEVSPSSEIVNHGLSSLSLCKSFALSPSPQRQTM-LPASDCFKRIHTKASPQSA 113
W ++ +V +VN L SL + P+ T+ +P + + K + A
Sbjct: 396 WFDVIKSDVM---VVVNK-LHKYSLVEK-----QPKESTISIP--SIYLELKVKLENEYA 444
Query: 114 MNDCELSNDHSDVVEEYANLK-WDELGFCLIPVD-YMY------VMKCSKEKNFS--HGI 163
+ H +V+ Y K +D +D Y Y + + + +
Sbjct: 445 L--------HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496
Query: 164 LTRFGRLE---------MNPSSGILNYGQGVFEGLKAYR-------TEDGRIL------L 201
F LE N S ILN + LK Y+ + R++ L
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILN----TLQQLKFYKPYICDNDPKYERLVNAILDFL 552
Query: 202 FRPEQNALR------MQMGADRLRMPSPTIEQFVDAVK 233
+ E+N + +++ L I F +A K
Sbjct: 553 PKIEENLICSKYTDLLRIA---LMAEDEAI--FEEAHK 585
Score = 41.0 bits (95), Expect = 9e-04
Identities = 68/484 (14%), Positives = 138/484 (28%), Gaps = 146/484 (30%)
Query: 21 LSKIRHQARDTRAV--QAYEPNVDRYHINGEYAKVDWCELGNKEVSPSSEIVNHGLSSLS 78
+ ++Q +D +V A+ N D + + L +E+ I+
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI----LSKEEID---HIIM------- 56
Query: 79 LCKSFALSPSPQRQTMLPASDCFKRIHTKASPQSAMNDCELSNDHSDVVEEYANLKWDEL 138
S T+ + Q + + L ++ ++
Sbjct: 57 -------SKDAVSGTLR-LFWTLLSKQEEMV-QKFVEEV-LRINYKFLMSPIKTE----- 101
Query: 139 GFCLIP--VDYMYVMKCSKEKN----FSHGILTRF--------GRLEMNPSSGILNYGQG 184
P + MY+ + + N F+ ++R LE+ P+ +L G
Sbjct: 102 --QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159
Query: 185 -------VFEGLKAYRTE---DGRIL------LFRPE-----QNALRMQMGADRLRMP-- 221
+ +Y+ + D +I PE L Q+ +
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 222 SPTIEQFVDAVKHTVVANKQWVPPPGKGSLYIRPLLMGSGPVLGATPAPDYTFLAFASPV 281
S I+ + +++ +R LL
Sbjct: 220 SSNIKLRIHSIQA-----------------ELRRLLKSK--------------------- 241
Query: 282 GNYHKGYLNL--VVEEKFYRAFPGG------T--GGVKAIVNYSTVFKPVAEAKAKGFSD 331
Y L L V K + AF T V ++ +T + + +
Sbjct: 242 -PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 332 -------VLFLDVKTAKYIEEVSTSNIFFLKGNVISTPATDGTILPGITRKSVIE-IAQI 383
+ +LD + EV T+N L ++I+ DG + + + I
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRL--SIIAESIRDGLATWDNWKHVNCDKLTTI 358
Query: 384 LGYQVEERAVAVEELFDSEEVFCTGTAMVVNPVNS-ITYQ------GKRIEYKTGPETVA 436
+ E ++ V E + ++F + V P ++ I I+ V
Sbjct: 359 I-----ESSLNVLEPAEYRKMF---DRLSVFPPSAHIPTILLSLIWFDVIKSD--VMVVV 408
Query: 437 QKLY 440
KL+
Sbjct: 409 NKLH 412
Score = 35.6 bits (81), Expect = 0.041
Identities = 65/424 (15%), Positives = 127/424 (29%), Gaps = 116/424 (27%)
Query: 8 LGKCSKPSRVGSLLSKIRHQARDTRAVQAYEPNVDRYHINGEYAK--------------- 52
L C+ P V +L K+ +Q ++ + + I+ A+
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 53 -VD--W-----------CEL--------------GNKEVSPSSEIVNHGLS---SLSLCK 81
+ C++ S + + L+ SL
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 82 SFALSPSPQRQTMLPASDCFKRIHTKASPQSAMNDC-ELSNDHSDVVEEYANLKWDELGF 140
+ L PQ LP +P+ ++ E D + + ++ D+L
Sbjct: 309 KY-LDCRPQ---DLPREVL------TTNPR-RLSIIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 141 -------CLIPVDY--MYVMKCS---KEKNFSHGILTRF-GRLEMNPSSGILNYGQGVFE 187
L P +Y M+ + S + +L+ + + ++N
Sbjct: 358 IIESSLNVLEPAEYRKMF-DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN------- 409
Query: 188 GLKAYRTEDGRILLFR-PEQNALRMQMGADRLRMPSPTIEQ----FVDAVK-HTVVANKQ 241
L Y L+ + P+++ + + L++ VD +
Sbjct: 410 KLHKYS------LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD 463
Query: 242 WVPPPGKGSLY------IRPLLMGSGPVLGATPAPDYTFLA----FASPVGNYHKGYLNL 291
+PP Y ++ + L D+ FL S N LN
Sbjct: 464 LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT 523
Query: 292 VVEEKFYRAF-----PGGTGGVKAIVNYSTVFKPVAEA---KAKGFSDVL--FLDVKTAK 341
+ + KFY+ + P V AI++ F P E +K ++D+L L +
Sbjct: 524 LQQLKFYKPYICDNDPKYERLVNAILD----FLPKIEENLICSK-YTDLLRIALMAEDEA 578
Query: 342 YIEE 345
EE
Sbjct: 579 IFEE 582
Score = 32.5 bits (73), Expect = 0.39
Identities = 37/297 (12%), Positives = 83/297 (27%), Gaps = 105/297 (35%)
Query: 232 VKHTVVANKQWVPPPGKGSLYIRPLLMGSGP-----VLGATPAPDYTFLAFA------SP 280
+ H +++ G+L + L+ + +Y FL P
Sbjct: 51 IDHIIMS-----KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105
Query: 281 VGNYHKGYLNLVVEEKFYRAFPGGTGGVKAIVNYS-TVFKPVAEAKA------------- 326
+ Y+ ++ Y + Y+ + +P + +
Sbjct: 106 SMMT-RMYIEQR--DRLYN-------DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155
Query: 327 ---KGF--SDVLFLDVKTAKYIEEVSTSNIFFLK-GNVISTPATDGTILPGITRKSVIEI 380
G + + LDV + ++ IF+L N S ++V+E+
Sbjct: 156 DGVLGSGKT-WVALDVCLSYKVQCKMDFKIFWLNLKNCNSP-------------ETVLEM 201
Query: 381 AQILGYQV------------------EERAVAVEELF----------------DSE--EV 404
Q L YQ+ + L +++
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261
Query: 405 F---C-----TGTAMVVNPVNSITYQGKRIEYKTGPETVAQKLYEMLVGIQTGRIED 453
F C T V + +++ T +++ + T + +L+ R +D
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK-SLLLKYLDCRPQD 317
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase
homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP:
c.66.1.26
Length = 343
Score = 29.4 bits (66), Expect = 2.7
Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 12/70 (17%)
Query: 325 KAKGFSD---VLFLDVKTAKYIEEVSTSNIFFLKGNVISTPATDGTILPGITRKSVIEIA 381
+ +D FL + + + + L NV TR +I+
Sbjct: 86 RQGDMTDSRTNSFLHI--LDILPRLQKLPKYILLENVKG-------FEVSSTRDLLIQTI 136
Query: 382 QILGYQVEER 391
+ G+Q +E
Sbjct: 137 ENCGFQYQEF 146
>1of5_B MTR2, YKL186C, mRNA transport regulator MTR2; nuclear protein,
repeat, leucine- rich repeat, nuclear transport; 2.8A
{Saccharomyces cerevisiae} SCOP: d.17.4.2
Length = 184
Score = 28.2 bits (62), Expect = 4.9
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 282 GNYHKGYLNLVVEEKFYRAFPGGTGGVKAIVNYSTVFKP 320
G Y L L+++++ +R GV + NY+ V+KP
Sbjct: 142 GPYFGISLQLIIDDRIFR---NDFNGVISGFNYNMVYKP 177
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics,
structural genomics consortium, SGC; HET: MTA; 1.82A
{Homo sapiens}
Length = 233
Score = 28.1 bits (62), Expect = 4.9
Identities = 15/78 (19%), Positives = 24/78 (30%), Gaps = 5/78 (6%)
Query: 319 KPVAEAKAKGFSDVLFLDVKTAKYIEEVSTSNIFFLKGN-----VISTPATDGTILPGIT 373
P DV+F DV V+ + FL+ I D T
Sbjct: 137 HPHKYRMLIAMVDVIFADVAQPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTASAEAV 196
Query: 374 RKSVIEIAQILGYQVEER 391
S ++ Q + +E+
Sbjct: 197 FASEVKKMQQENMKPQEQ 214
>3r7k_A Probable acyl COA dehydrogenase; ssgcid, structural genomics,
seattle structural genomics CEN infectious disease,
oxidoreductase; HET: FDA; 2.50A {Mycobacterium
abscessus}
Length = 403
Score = 28.3 bits (64), Expect = 5.4
Identities = 10/21 (47%), Positives = 11/21 (52%), Gaps = 4/21 (19%)
Query: 445 GIQTGRIEDKMGW----TVEL 461
G + R DKMGW T EL
Sbjct: 216 GFEVSRRLDKMGWRCSDTAEL 236
>1egd_A Medium chain acyl-COA dehydrogenase; flavoprotein, electron
transfer; HET: FAD; 2.40A {Homo sapiens} SCOP: a.29.3.1
e.6.1.1 PDB: 1egc_A* 1ege_A* 1t9g_A* 2a1t_A* 1udy_A*
3mdd_A* 3mde_A*
Length = 396
Score = 28.2 bits (64), Expect = 6.5
Identities = 9/21 (42%), Positives = 10/21 (47%), Gaps = 4/21 (19%)
Query: 445 GIQTGRIEDKMGW----TVEL 461
GIQ GR E MG T +
Sbjct: 205 GIQIGRKELNMGQRCSDTRGI 225
>1q42_A MTR2, mRNA transport regulator MTR2; NTF2-fold, nuclear export,
translation; 1.75A {Candida albicans} SCOP: d.17.4.2
PDB: 1q40_A
Length = 201
Score = 27.5 bits (60), Expect = 7.1
Identities = 11/63 (17%), Positives = 22/63 (34%), Gaps = 5/63 (7%)
Query: 258 MGSGPVLGATPAPDYTFLAFASPVGNYHKGYLNLVVEEKFYRAFPGGTGGVKAIVNYSTV 317
+G L + G++ +NLVV+E + G + ++Y
Sbjct: 137 LGESADLFQENNSIVSKTNQRPIWGSWFGVDVNLVVDENVMQD-----GEIINSMDYRFT 191
Query: 318 FKP 320
+ P
Sbjct: 192 YVP 194
>3l3s_A Enoyl-COA hydratase/isomerase family protein; crotonase
superfamily, dimer of trimers, PSI-2, NYSGXRC,
structural genomics; 2.32A {Ruegeria pomeroyi}
Length = 263
Score = 27.7 bits (62), Expect = 8.2
Identities = 7/30 (23%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 186 FEGLKAYRTEDG--RILLFRPEQNALRMQM 213
+GL +G + L R + L M
Sbjct: 5 QDGLLGEVLSEGVLTLTLGRAPAHPLSRAM 34
>1rx0_A Acyl-COA dehydrogenase family member 8, mitochondrial;
flavoprotein, coenzyme A, oxidoreductase; HET: FAD 2MC;
1.77A {Homo sapiens} SCOP: a.29.3.1 e.6.1.1
Length = 393
Score = 27.9 bits (63), Expect = 8.7
Identities = 7/21 (33%), Positives = 11/21 (52%), Gaps = 4/21 (19%)
Query: 445 GIQTGRIEDKMGW----TVEL 461
G+ G+ E K+GW T +
Sbjct: 204 GLSFGKKEKKVGWNSQPTRAV 224
>1r2j_A Protein FKBI; polyketide synthase, polyketide, acyl-COA
dehydrogenase, , aldehyde dehydrogenase, oxidoreductase;
HET: FAD; 2.10A {Streptomyces hygroscopicus} SCOP:
a.29.3.1 e.6.1.1
Length = 366
Score = 27.5 bits (62), Expect = 9.4
Identities = 4/21 (19%), Positives = 8/21 (38%), Gaps = 4/21 (19%)
Query: 445 GIQTGRIEDKMGW----TVEL 461
G++ R+ G +L
Sbjct: 174 GVRVERVPKPSGCRAAGHADL 194
>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic
groups, and carriers, transferase; HET: PT1; 1.90A
{Coxiella burnetii}
Length = 314
Score = 27.6 bits (62), Expect = 9.6
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 2/27 (7%)
Query: 368 ILPGITRKSVIEIAQILGYQVEERAVA 394
+L G +RKS+ I +L E R
Sbjct: 231 VLSGWSRKSM--IGDVLNQPPENRLFG 255
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.399
Gapped
Lambda K H
0.267 0.0769 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,157,150
Number of extensions: 440875
Number of successful extensions: 882
Number of sequences better than 10.0: 1
Number of HSP's gapped: 829
Number of HSP's successfully gapped: 46
Length of query: 462
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 365
Effective length of database: 3,993,456
Effective search space: 1457611440
Effective search space used: 1457611440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.4 bits)