RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 012487
(462 letters)
>d2a1ha1 e.17.1.1 (A:3-365) Branched-chain aminoacid
aminotransferase {Human (Homo sapiens), mitochondrial
[TaxId: 9606]}
Length = 363
Score = 223 bits (569), Expect = 1e-69
Identities = 98/343 (28%), Positives = 164/343 (47%), Gaps = 20/343 (5%)
Query: 135 WDELGFCLIPVDYMYVMKCSKEKNFSHGILTRFGRLEMNPSSGILNYGQGVFEGLKAYRT 194
+ L F D+M +++ +K + + F L ++P+S L+Y +FEG+KA++
Sbjct: 23 GEPLVFGKTFTDHMLMVEW-NDKGWGQPRIQPFQNLTLHPASSSLHYSLQLFEGMKAFKG 81
Query: 195 EDGRILLFRPEQNALRMQMGADRLRMPSPTIEQFVDAVKHTVVANKQWVPPPGKGSLYIR 254
+D ++ LFRP N RM A RL +PS + ++ ++ + +K WVP SLY+R
Sbjct: 82 KDQQVRLFRPWLNMDRMLRSAMRLCLPSFDKLELLECIRRLIEVDKDWVPDAAGTSLYVR 141
Query: 255 PLLMGSGPVLGATPAPDYTFLAFASPVGNYHKGY----LNLVVEEKFYRAFPGGTGGVKA 310
P+L+G+ P LG + PVG Y G ++L+ + F RA+ GG G K
Sbjct: 142 PVLIGNEPSLGVSQPRRALLFVILCPVGAYFPGGSVTPVSLLADPAFIRAWVGGVGNYKL 201
Query: 311 IVNYSTVFKPVAEAKAKGFSDVLFLDVKTAKYIEEVSTSNIFFLKGN----VISTPATDG 366
NY EA +G VL+L + E + + + + TP +G
Sbjct: 202 GGNYGPTVLVQQEALKRGCEQVLWLYGPDHQLTEVGTMNIFVYWTHEDGVLELVTPPLNG 261
Query: 367 TILPGITRKSVIEIAQILG-YQVEERAVAVEELFDS------EEVFCTGTAMVVNPVNSI 419
ILPG+ R+S++++AQ G ++V ER + +++L + EVF +GTA V PV+ I
Sbjct: 262 VILPGVVRQSLLDMAQTWGEFRVVERTITMKQLLRALEEGRVREVFGSGTACQVCPVHRI 321
Query: 420 TYQGKRIEYKTGPE--TVAQKLYEMLVGIQTGRIEDKMGWTVE 460
Y+ + + T + + + L IQ G W
Sbjct: 322 LYKDRNLHIPTMENGPELILRFQKELKEIQYGIRAH--EWMFP 362
>d1iyea_ e.17.1.1 (A:) Branched-chain aminoacid aminotransferase
{Escherichia coli [TaxId: 562]}
Length = 304
Score = 171 bits (433), Expect = 3e-50
Identities = 89/309 (28%), Positives = 148/309 (47%), Gaps = 21/309 (6%)
Query: 162 GILTRFGRLEMNPSSGILNYGQGVFEGLKAYRTEDGRILLFRPEQNALRMQMGADRLRMP 221
G + R+ +++ S L+YG VFEG++ Y + G ++ FR ++ R+ A R P
Sbjct: 9 GEMVRWEDAKVHVMSHALHYGTSVFEGIRCYDSHKGPVV-FRHREHMQRLHDSAKIYRFP 67
Query: 222 SPTIEQFVDAVKHTVVANKQWVPPPGKGSLYIRPLLMGSGPVLGATPAPDYTF--LAFAS 279
+ A + + S YIRPL+ +G P Y+ + A
Sbjct: 68 VSQSID------ELMEACRDVIRKNNLTSAYIRPLIFVGDVGMGVNPPAGYSTDVIIAAF 121
Query: 280 PVGNYHKGYLN----LVVEEKFYRAFPGGTGGVKAIV-NYSTVFKPVAEAKAKGFSDVLF 334
P G Y + + RA P NY + +EA+ G+ + +
Sbjct: 122 PWGAYLGAEALEQGIDAMVSSWNRAAPNTIPTAAKAGGNYLSSLLVGSEARRHGYQEGIA 181
Query: 335 LDVKTAKYIEEVSTSNIFFLKGNVISTPATDGTILPGITRKSVIEIAQILGYQVEERAVA 394
LDV YI E + N+F +K V+ TP + LPGITR ++I++A+ LG +V E+ ++
Sbjct: 182 LDVN--GYISEGAGENLFEVKDGVLFTPPFTSSALPGITRDAIIKLAKELGIEVREQVLS 239
Query: 395 VEELFDSEEVFCTGTAMVVNPVNSITYQGKRI-EYKTGPETVAQKLYEMLVGIQTGRIED 453
E L+ ++EVF +GTA + PV S+ G ++ E + GP V +++ + G+ TG ED
Sbjct: 240 RESLYLADEVFMSGTAAEITPVRSV--DGIQVGEGRCGP--VTKRIQQAFFGLFTGETED 295
Query: 454 KMGWTVELN 462
K GW ++N
Sbjct: 296 KWGWLDQVN 304
>d1daaa_ e.17.1.1 (A:) D-aminoacid aminotransferase {Bacillus sp.,
strain YM-1 [TaxId: 1409]}
Length = 277
Score = 107 bits (267), Expect = 6e-27
Identities = 59/282 (20%), Positives = 107/282 (37%), Gaps = 18/282 (6%)
Query: 161 HGILTRFGRLEMNPSSGILNYGQGVFEGLKAYRTEDGRILLFRPEQNALRMQMGADRLRM 220
+ + + ++++ +G GV+E +K Y +G + F ++ R+ A+++R+
Sbjct: 6 NDQIVKDEEVKIDKEDRGYQFGDGVYEVVKVY---NGEM--FTVNEHIDRLYASAEKIRI 60
Query: 221 PSPTIEQFVDAVKHTVVANKQWVPPPGKGSLYIRPLLMGSGPVLGATPAPDYTFLAFASP 280
P + + H +V + G +Y + S + +
Sbjct: 61 TIPYTKDKFHQLLHELVEKNELNT----GHIYFQVTRGTSPRAHQFPENTVKPVIIGYTK 116
Query: 281 VGNYHKGYLNLVVEEKFYRAFPGGTGGVKAIVNYSTVFKPVAEAKAKGFSDVLFLDVKTA 340
L V+ F +K++ N EA KG + +
Sbjct: 117 ENPRPLENLEKGVKATFVEDIRWLRCDIKSL-NLLGAVLAKQEAHEKGCYEAILHRNN-- 173
Query: 341 KYIEEVSTSNIFFLKGNVISTPATDGTILPGITRKSVIEIAQILGYQVEERAVAVEELFD 400
+ E S+SN+F +K ++ T + IL GITR VI A + V+E E
Sbjct: 174 -TVTEGSSSNVFGIKDGILYTHPANNMILKGITRDVVIACANEINMPVKEIPFTTHEALK 232
Query: 401 SEEVFCTGTAMVVNPVNSITYQGKRI-EYKTGPETVAQKLYE 441
+E+F T T + PV I GK I + K G +KL +
Sbjct: 233 MDELFVTSTTSEITPVIEI--DGKLIRDGKVGE--WTRKLQK 270
>d1i2ka_ e.17.1.1 (A:) Aminodeoxychorismate lyase {Escherichia coli
[TaxId: 562]}
Length = 269
Score = 89.3 bits (220), Expect = 9e-21
Identities = 47/266 (17%), Positives = 85/266 (31%), Gaps = 21/266 (7%)
Query: 179 LNYGQGVFEGLKAYRTEDGRILLFRPEQNALRMQMGADRLRMPSPTIEQFVDAVKHTVVA 238
+G G F + DG++ + R+Q RL + Q
Sbjct: 19 TQFGDGCFTTARVI---DGKV--SLLSAHIQRLQDACQRLMISCDFWPQLEQE------- 66
Query: 239 NKQWVPPPGKGSLYIRPLLMGSGPVLGATPAPDYTFLAFASPVGNYHKGYLNLVVEEK-- 296
K G L + G + T + + ++ N +
Sbjct: 67 MKTLAAEQQNGVLKVVISRGSGGRGYSTLNSGPATRILSVTAYPAHYDRLRNEGITLALS 126
Query: 297 FYRAFPGGTGGVKAIVNYSTVFKPVAEAKAKGFSDVLFLDVKTAKYIEEVSTSNIFFLKG 356
R +N + + + L LD + ++ E +N+F+ KG
Sbjct: 127 PVRLGRNPHLAGIKHLNRLEQVLIRSHLEQTNADEALVLD--SEGWVTECCAANLFWRKG 184
Query: 357 NVISTPATDGTILPGITRKSVIEIAQILGYQVEERAVAVEELFDSEEVFCTGTAMVVNPV 416
NV+ TP D + GI R+ I + YQ+ E ++EE ++E+ M V PV
Sbjct: 185 NVVYTPRLDQAGVNGIMRQFCIRLLAQSSYQLVEVQASLEESLQADEMVICNALMPVMPV 244
Query: 417 NSITYQGKRIEYKTGPET-VAQKLYE 441
+ + + + L E
Sbjct: 245 CAC----GDVSFSSATLYEYLAPLCE 266
>d2j8cl1 f.26.1.1 (L:1-281) L (light) subunit {Rhodobacter
sphaeroides [TaxId: 1063]}
Length = 281
Score = 30.1 bits (68), Expect = 0.47
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 4/36 (11%)
Query: 253 IRPLLMGS---GPVLGATPAPDYTFLAFASPVGNYH 285
RP++MG+ G D+ GN+H
Sbjct: 134 FRPVMMGAWGYAFPYGIWTHLDW-VSNTGYTYGNFH 168
>d2i5nm1 f.26.1.1 (M:1-323) M (medium) subunit {Rhodopseudomonas
viridis [TaxId: 1079]}
Length = 323
Score = 28.5 bits (64), Expect = 1.5
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 4/36 (11%)
Query: 253 IRPLLMGS---GPVLGATPAPDYTFLAFASPVGNYH 285
I P L+GS G G P D+ AF+ GN++
Sbjct: 161 IHPTLVGSWSEGVPFGIWPHIDWL-TAFSIRYGNFY 195
>d1eysm_ f.26.1.1 (M:) M (medium) subunit {Thermochromatium tepidum
[TaxId: 1050]}
Length = 318
Score = 28.5 bits (64), Expect = 1.5
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Query: 253 IRPLLMGS---GPVLGATPAPDYTFLAFASPVGNYH 285
IRP++MGS G P D+T AF+ GN +
Sbjct: 162 IRPVMMGSWAKAVPFGIFPHLDWT-AAFSIRYGNLY 196
>d1of5b_ d.17.4.2 (B:) mRNA transport regulator MTR2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 165
Score = 27.9 bits (62), Expect = 1.6
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 282 GNYHKGYLNLVVEEKFYRAFPGGTGGVKAIVNYSTVFKP 320
G Y L L++++ R F GV + NY+ V+KP
Sbjct: 129 GPYFGISLQLIIDD---RIFRNDFNGVISGFNYNMVYKP 164
>d2ox6a1 a.35.1.6 (A:5-166) Hypothetical protein SO3848 {Shewanella
oneidensis [TaxId: 70863]}
Length = 162
Score = 28.1 bits (62), Expect = 1.6
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 370 PGITRKSVIEIAQILGYQVEERAVAVEELFDSEEVFCTGTAMVVNPVNSITYQ 422
P + +K +++I I+ QV +E LF E A VV P +I Q
Sbjct: 44 PELAQKKLLDIDDIIEMQVLNTTDGIEALFKKEPK--RHLAFVVYPTQAIYTQ 94
>d2i5nl1 f.26.1.1 (L:1-273) L (light) subunit {Rhodopseudomonas
viridis [TaxId: 1079]}
Length = 273
Score = 28.5 bits (64), Expect = 1.6
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 4/36 (11%)
Query: 253 IRPLLMGS---GPVLGATPAPDYTFLAFASPVGNYH 285
RPLL+GS G D+ F N+H
Sbjct: 134 FRPLLLGSWGHAFPYGILSHLDWV-NNFGYQYLNWH 168
>d2j8cm1 f.26.1.1 (M:1-303) M (medium) subunit {Rhodobacter
sphaeroides [TaxId: 1063]}
Length = 303
Score = 27.7 bits (62), Expect = 3.2
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Query: 253 IRPLLMGS---GPVLGATPAPDYTFLAFASPVGNYH 285
IRP+LMGS G D+T F+ GN
Sbjct: 163 IRPILMGSWSEAVPYGIFSHLDWT-NNFSLVHGNLF 197
>d1xo3a_ d.15.3.3 (A:) C9orf74 homolog {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 101
Score = 26.4 bits (58), Expect = 3.3
Identities = 12/61 (19%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Query: 12 SKPSRVGSLLSKIRHQARDTRAVQAYEPNVDRYHINGEYAKVDWCELGNKE--VSPSSEI 69
+P + +LL I+ R + + R I DW LG + + I
Sbjct: 33 EEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWELLGELDYQLQDQDSI 92
Query: 70 V 70
+
Sbjct: 93 L 93
>d1eysl_ f.26.1.1 (L:) L (light) subunit {Thermochromatium tepidum
[TaxId: 1050]}
Length = 280
Score = 27.0 bits (60), Expect = 4.9
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 4/36 (11%)
Query: 253 IRPLLMGS---GPVLGATPAPDYTFLAFASPVGNYH 285
+RPLLMG+ G G D+ ++H
Sbjct: 142 VRPLLMGAWGHGFPYGILSHLDWV-SNVGYQFLHFH 176
>d1ni9a_ e.7.1.2 (A:) Glycerol metabolism protein GlpX {Escherichia
coli [TaxId: 562]}
Length = 328
Score = 26.4 bits (58), Expect = 7.9
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 14/56 (25%)
Query: 322 AEAKAKG--FSDVLFLDVKTAKYIEEVSTSNIFFLKGNVISTPATDGTILPGITRK 375
A KA G VL L + + N+ F +T T G +L GI+RK
Sbjct: 256 ARCKAMGIEAGKVLRLG-------DMARSDNVIF-----SATGITKGDLLEGISRK 299
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.399
Gapped
Lambda K H
0.267 0.0543 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,724,848
Number of extensions: 81924
Number of successful extensions: 207
Number of sequences better than 10.0: 1
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 14
Length of query: 462
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 374
Effective length of database: 1,199,356
Effective search space: 448559144
Effective search space used: 448559144
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.4 bits)