BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012488
(462 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OZ2|A Chain A, Crystal Structure Of A Geranylgeranyl Bacteriochlorophyll
Reductase- Like (Ta0516) From Thermoplasma Acidophilum
At 1.60 A Resolution
Length = 397
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 90/350 (25%), Positives = 135/350 (38%), Gaps = 70/350 (20%)
Query: 70 AKNGVETFLIERKLDNCKP--CGGAIPLCMVGEFDLPLD--IIDRKVTKMKMISPSNVAV 125
AK G++T IE++ + P CG + ++ E D+ D I +V ++ PS
Sbjct: 24 AKYGLKTLXIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIANEVKGARIYGPSEKRP 83
Query: 126 DIGQTLKPHEYIGMV-RREVLDAYLRERAEKNGASVINGLFMKMDLPRNFEQPYVLYYTE 184
I Q+ K +G V R+ D +L A K GA V + + L +
Sbjct: 84 IILQSEKAGNEVGYVLERDKFDKHLAALAAKAGADV-------------WVKSPALGVIK 130
Query: 185 YDGTKGGVGEKRTLEV-----DAVIGADGANSRVA-----KSINAGDYDYAIAFQERVKI 234
+G G + E+ VI ADG S KS+ D A Q R
Sbjct: 131 ENGKVAGAKIRHNNEIVDVRAKXVIAADGFESEFGRWAGLKSVILARNDIISALQYRXIN 190
Query: 235 PDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHVA-VGTGTVTHKGDIKKFQLATRNRA 293
D Y + Y+G ++P Y WVFPK + A VG G+ + NR
Sbjct: 191 VDVDPDY----TDFYLGS-IAPAGYIWVFPKGEGXANVGIGSSIN---------WIHNRF 236
Query: 294 KDKILGGKIIRVEAHP-IPEHPRPRRLSGRVA--------------LVGDAAGYVTKCSG 338
+ K + I E HP + + + ++G V+ LVGDAA + +G
Sbjct: 237 ELKNYLDRFI--ENHPGLKKGQDIQLVTGGVSVSKVKXPITXPGLXLVGDAARLIDPITG 294
Query: 339 EGIYFAAKSGRMCAEAIIEGSENG----------TRMIDEGDLRKYLEKW 378
GI A SG A+ E E+ ++I E RK+L W
Sbjct: 295 GGIANAIVSGXYAAQVTKEAIESNDYSPQXXQKYEKLIKERFERKHLRNW 344
>pdb|3ATQ|A Chain A, Geranylgeranyl Reductase (Ggr) From Sulfolobus
Acidocaldarius
pdb|3ATR|A Chain A, Geranylgeranyl Reductase (Ggr) From Sulfolobus
Acidocaldarius Co- Crystallized With Its Ligand
Length = 453
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 67/318 (21%), Positives = 126/318 (39%), Gaps = 43/318 (13%)
Query: 69 LAKNGVETFLIERKLDN---CKPCGGAIPLCMVGEFDLPL---DIIDRKVTKMKMISPSN 122
L++ G++ L++ K N KPCG A+ + +P + ++ K+ +K+ SP
Sbjct: 25 LSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYSPDM 84
Query: 123 VAVDIGQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGLFMKMDLPRNFEQPYVLYY 182
V T+ + + + + + + A+ G + + + + FE YV
Sbjct: 85 QTV---WTVNGEGF--ELNAPLYNQRVLKEAQDRGVEIWD---LTTAMKPIFEDGYV--- 133
Query: 183 TEYDGTKGGV------GEKRTLEVDAVIGADGANSRVAKSI--------NAGDYDYAIAF 228
KG V E+ T+ V+ A G + + + D D +A+
Sbjct: 134 ------KGAVLFNRRTNEELTVYSKVVVEATGYSRSFRSKLPPELPITEDLDDKDADVAY 187
Query: 229 QERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKC-DHVAVGTGTVTHKG--DIKKF 285
+E V + E + ++ L +++ + SP Y W FPK + V VG G G I ++
Sbjct: 188 RE-VLLTKEDIEDHDYL-RIFIDQETSPGGYWWYFPKGKNKVNVGLGIQGGMGYPSIHEY 245
Query: 286 QLATRNRAKDKILGGKIIRVEAHPIP-EHPRPRRLSGRVALVGDAAGYVTKCSGEGIYFA 344
++ + K++ +P P + ++GD+ V G G A
Sbjct: 246 YKKYLDKYAPDVDKSKLLVKGGALVPTRRPLYTMAWNGIIVIGDSGFTVNPVHGGGKGSA 305
Query: 345 AKSGRMCAEAIIEGSENG 362
SG A+AI+ E G
Sbjct: 306 MISGYCAAKAILSAFETG 323
>pdb|3FOT|A Chain A, Structural And Functional Characterization Of Tri3
Trichothecene 15-O- Acetyltransferase From Fusarium
Sporotrichioides
pdb|3FP0|A Chain A, Structural And Functional Characterization Of Tri3
Trichothecene 15-O-Acetyltransferase From Fusarium
Sporotrichioides
Length = 519
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 180 LYYTEYDGTKGGVGEKRTLEVDAVIGADGANSRVAKSINAGDYDYAIAFQERVKIPDEKM 239
LY + G+ G ++R + +A++G + N R YD IA R P +
Sbjct: 16 LYRWKSTGSSGRQVQRRCVGAEAIVGLEEKNRRAL-------YDLYIATSLRNIAPASTL 68
Query: 240 VYYENLAEMY 249
+ +NL EM+
Sbjct: 69 LTLQNLKEMF 78
>pdb|3RP8|A Chain A, Crystal Structure Of Klebsiella Pneumoniae R204q Hpxo
Complexed With Fad
Length = 407
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 304 RVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEG 340
R+E H I P R + GRVAL+GDA T G+G
Sbjct: 286 RIEIHDI--EPFSRLVRGRVALLGDAGHSTTPDIGQG 320
>pdb|3RP6|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed
With Fad
pdb|3RP7|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed
With Fad And Uric Acid
Length = 407
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 304 RVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEG 340
R+E H I P R + GRVAL+GDA T G+G
Sbjct: 286 RIEIHDI--EPFSRLVRGRVALLGDAGHSTTPDIGQG 320
>pdb|3E1T|A Chain A, Structure And Action Of The Myxobacterial Chondrochloren
Halogenase Cndh, A New Variant Of Fad-Dependent
Halogenases
Length = 512
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 26/108 (24%)
Query: 323 VALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAI---IEGSENGTR---------MIDEGD 370
+ALVGDAA +V G++ A S + A AI + G + R + G+
Sbjct: 298 MALVGDAACFVDPVFSSGVHLATYSALLVARAINTCLAGEMSEQRCFEEFERRYRREYGN 357
Query: 371 LRKYL-------EKWDKTYWPTYKVLDVLQKVFYRSNPAREAFVEMCA 411
++L + D +W K+++ ++ A EAFV + A
Sbjct: 358 FYQFLVAFYDMNQDTDSYFWSARKIINTEER-------ANEAFVRLIA 398
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,760,492
Number of Sequences: 62578
Number of extensions: 609300
Number of successful extensions: 1516
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1510
Number of HSP's gapped (non-prelim): 22
length of query: 462
length of database: 14,973,337
effective HSP length: 102
effective length of query: 360
effective length of database: 8,590,381
effective search space: 3092537160
effective search space used: 3092537160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)