Query 012488
Match_columns 462
No_of_seqs 234 out of 2728
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 03:10:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012488.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012488hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00093 geranylgeranyl diphos 100.0 2.3E-58 5E-63 459.4 48.1 428 34-462 23-450 (450)
2 TIGR02028 ChlP geranylgeranyl 100.0 1.9E-52 4E-57 413.8 45.3 398 51-449 1-398 (398)
3 TIGR02023 BchP-ChlP geranylger 100.0 1.1E-49 2.4E-54 394.2 44.8 387 51-449 1-388 (388)
4 COG0644 FixC Dehydrogenases (f 100.0 4.4E-37 9.6E-42 304.4 36.8 337 49-410 2-354 (396)
5 PRK08013 oxidoreductase; Provi 100.0 3.5E-36 7.6E-41 299.1 36.1 331 50-401 3-362 (400)
6 PRK06617 2-octaprenyl-6-methox 100.0 2.4E-35 5.1E-40 290.5 35.3 318 51-401 2-343 (374)
7 PRK07364 2-octaprenyl-6-methox 100.0 5E-35 1.1E-39 293.0 35.5 340 43-401 11-374 (415)
8 PRK10015 oxidoreductase; Provi 100.0 1.7E-34 3.8E-39 287.7 38.4 339 46-399 1-374 (429)
9 COG0654 UbiH 2-polyprenyl-6-me 100.0 4.5E-35 9.7E-40 289.5 32.9 332 50-405 2-359 (387)
10 PRK08773 2-octaprenyl-3-methyl 100.0 1.2E-34 2.6E-39 287.8 35.2 334 48-402 4-363 (392)
11 PRK05714 2-octaprenyl-3-methyl 100.0 5.5E-35 1.2E-39 291.5 32.9 332 49-401 1-365 (405)
12 PRK08020 ubiF 2-octaprenyl-3-m 100.0 8.1E-35 1.8E-39 289.1 33.6 335 46-401 1-361 (391)
13 PRK08850 2-octaprenyl-6-methox 100.0 2.7E-34 5.9E-39 286.3 35.9 332 50-402 4-363 (405)
14 PF01494 FAD_binding_3: FAD bi 100.0 1.2E-35 2.6E-40 291.3 25.8 319 50-385 1-352 (356)
15 PRK07333 2-octaprenyl-6-methox 100.0 4.4E-34 9.6E-39 285.1 34.4 331 50-401 1-360 (403)
16 PRK06185 hypothetical protein; 100.0 4.6E-34 9.9E-39 285.3 34.2 337 46-400 2-361 (407)
17 TIGR01989 COQ6 Ubiquinone bios 100.0 5.9E-34 1.3E-38 285.9 34.8 335 51-402 1-414 (437)
18 PRK09126 hypothetical protein; 100.0 2.3E-34 5.1E-39 286.0 31.2 331 50-401 3-360 (392)
19 PRK08244 hypothetical protein; 100.0 3.9E-34 8.5E-39 291.9 33.6 328 49-398 1-346 (493)
20 PRK08243 4-hydroxybenzoate 3-m 100.0 7.9E-34 1.7E-38 281.6 33.7 330 49-399 1-353 (392)
21 PRK07045 putative monooxygenas 100.0 6.5E-34 1.4E-38 282.2 33.0 344 46-412 1-374 (388)
22 PRK06183 mhpA 3-(3-hydroxyphen 100.0 1.3E-33 2.9E-38 290.6 35.5 335 48-401 8-363 (538)
23 TIGR02032 GG-red-SF geranylger 100.0 1.3E-33 2.8E-38 269.8 32.4 287 51-355 1-295 (295)
24 PRK07494 2-octaprenyl-6-methox 100.0 5.1E-34 1.1E-38 283.1 29.8 334 46-404 3-360 (388)
25 TIGR01988 Ubi-OHases Ubiquinon 100.0 2.6E-33 5.7E-38 278.0 33.9 329 52-401 1-356 (385)
26 PRK08849 2-octaprenyl-3-methyl 100.0 4.4E-33 9.5E-38 275.5 35.1 326 50-401 3-354 (384)
27 PRK10157 putative oxidoreducta 100.0 6.3E-33 1.4E-37 276.9 35.7 337 46-399 1-373 (428)
28 PRK06753 hypothetical protein; 100.0 2.1E-33 4.5E-38 277.3 31.9 321 51-401 1-343 (373)
29 PTZ00367 squalene epoxidase; P 100.0 7.1E-33 1.5E-37 281.8 36.0 387 43-444 26-466 (567)
30 PRK08294 phenol 2-monooxygenas 100.0 1.3E-32 2.9E-37 285.4 38.6 342 48-400 30-416 (634)
31 PRK08132 FAD-dependent oxidore 100.0 1.5E-32 3.2E-37 283.5 37.4 335 48-400 21-375 (547)
32 PRK06996 hypothetical protein; 100.0 1.2E-32 2.6E-37 273.6 35.4 334 43-401 4-365 (398)
33 PRK07190 hypothetical protein; 100.0 1.1E-32 2.4E-37 278.4 35.6 328 46-396 1-347 (487)
34 TIGR02360 pbenz_hydroxyl 4-hyd 100.0 1.1E-32 2.3E-37 272.7 32.0 329 49-400 1-354 (390)
35 PRK06184 hypothetical protein; 100.0 9.2E-33 2E-37 282.3 32.0 326 50-396 3-352 (502)
36 TIGR01984 UbiH 2-polyprenyl-6- 100.0 1.8E-32 4E-37 271.5 33.2 326 52-401 1-353 (382)
37 PRK06834 hypothetical protein; 100.0 1.3E-32 2.8E-37 278.2 32.4 321 50-397 3-338 (488)
38 PLN02985 squalene monooxygenas 100.0 9.4E-32 2E-36 272.5 38.0 351 43-411 36-421 (514)
39 PRK07608 ubiquinone biosynthes 100.0 9.9E-32 2.1E-36 266.9 35.8 332 48-401 3-359 (388)
40 PRK07538 hypothetical protein; 100.0 1.7E-32 3.7E-37 273.9 29.4 320 51-387 1-357 (413)
41 PRK06126 hypothetical protein; 100.0 7.9E-32 1.7E-36 278.4 33.2 333 45-393 2-372 (545)
42 PRK05732 2-octaprenyl-6-methox 100.0 2.6E-31 5.7E-36 264.5 34.7 331 50-401 3-362 (395)
43 PRK07588 hypothetical protein; 100.0 8.6E-32 1.9E-36 267.3 31.1 326 51-401 1-354 (391)
44 PRK06475 salicylate hydroxylas 100.0 1.8E-31 4E-36 265.4 33.2 323 51-398 3-361 (400)
45 PRK05868 hypothetical protein; 100.0 1.8E-31 4E-36 262.1 31.7 282 52-357 3-318 (372)
46 PRK08163 salicylate hydroxylas 100.0 8.5E-31 1.8E-35 260.8 33.8 325 49-398 3-358 (396)
47 PRK11445 putative oxidoreducta 100.0 5.7E-31 1.2E-35 256.9 30.4 299 51-383 2-318 (351)
48 TIGR01790 carotene-cycl lycope 100.0 4.2E-29 9.2E-34 247.9 39.4 306 52-384 1-321 (388)
49 PRK06847 hypothetical protein; 100.0 5.1E-30 1.1E-34 253.4 31.7 316 50-396 4-351 (375)
50 PRK07236 hypothetical protein; 100.0 4.7E-30 1E-34 254.2 30.6 317 50-393 6-372 (386)
51 PLN02697 lycopene epsilon cycl 100.0 1.5E-28 3.3E-33 247.4 38.8 335 49-412 107-471 (529)
52 TIGR03219 salicylate_mono sali 100.0 6.3E-30 1.4E-34 255.6 25.5 324 51-398 1-375 (414)
53 KOG2614 Kynurenine 3-monooxyge 100.0 7.8E-30 1.7E-34 238.5 20.9 291 50-360 2-327 (420)
54 PLN02463 lycopene beta cyclase 100.0 7.7E-28 1.7E-32 239.0 35.9 294 49-363 27-336 (447)
55 PLN02927 antheraxanthin epoxid 100.0 7.1E-29 1.5E-33 253.6 26.5 316 48-385 79-435 (668)
56 PF04820 Trp_halogenase: Trypt 99.9 6.7E-26 1.5E-30 226.6 26.1 312 52-394 1-383 (454)
57 PF05834 Lycopene_cycl: Lycope 99.9 7.5E-24 1.6E-28 208.1 35.9 277 52-357 1-290 (374)
58 KOG1298 Squalene monooxygenase 99.9 1.2E-24 2.6E-29 199.9 25.3 330 46-397 41-398 (509)
59 PRK08255 salicylyl-CoA 5-hydro 99.9 3.3E-25 7.1E-30 235.6 23.9 302 51-397 1-340 (765)
60 KOG2415 Electron transfer flav 99.9 3.1E-23 6.7E-28 192.3 24.6 405 48-460 74-538 (621)
61 TIGR01789 lycopene_cycl lycope 99.9 1.4E-21 3.1E-26 191.0 29.7 269 52-356 1-286 (370)
62 KOG3855 Monooxygenase involved 99.9 1.6E-22 3.4E-27 188.1 21.1 343 47-401 33-450 (481)
63 PF08491 SE: Squalene epoxidas 99.7 1.1E-14 2.3E-19 132.3 23.4 243 200-457 2-268 (276)
64 TIGR00292 thiazole biosynthesi 99.5 3.5E-13 7.6E-18 124.4 14.4 151 47-218 18-177 (254)
65 PRK04176 ribulose-1,5-biphosph 99.5 6E-13 1.3E-17 123.3 14.0 154 47-218 22-180 (257)
66 COG2081 Predicted flavoprotein 99.5 2.3E-13 5E-18 128.2 11.0 147 49-212 2-168 (408)
67 COG1635 THI4 Ribulose 1,5-bisp 99.5 1.3E-12 2.8E-17 112.6 13.7 154 48-218 28-185 (262)
68 PF01946 Thi4: Thi4 family; PD 99.4 2.7E-12 6E-17 111.5 10.8 149 48-215 15-169 (230)
69 PF01266 DAO: FAD dependent ox 99.4 4.8E-11 1E-15 116.9 19.1 67 139-219 143-212 (358)
70 PF03486 HI0933_like: HI0933-l 99.3 2E-12 4.4E-17 127.1 6.8 148 51-212 1-167 (409)
71 TIGR01377 soxA_mon sarcosine o 99.3 2.2E-09 4.9E-14 106.3 25.1 68 139-220 141-210 (380)
72 PRK12266 glpD glycerol-3-phosp 99.3 2.8E-09 6E-14 109.1 26.2 69 140-216 152-222 (508)
73 PRK13369 glycerol-3-phosphate 99.3 3E-09 6.5E-14 108.9 26.3 206 139-360 151-379 (502)
74 PRK05192 tRNA uridine 5-carbox 99.2 5.4E-11 1.2E-15 120.7 11.8 144 49-211 3-157 (618)
75 TIGR03329 Phn_aa_oxid putative 99.2 7E-10 1.5E-14 112.5 19.3 59 139-212 179-238 (460)
76 PRK11259 solA N-methyltryptoph 99.2 3E-09 6.6E-14 105.2 22.7 60 139-212 145-205 (376)
77 PRK11728 hydroxyglutarate oxid 99.2 2.3E-09 4.9E-14 106.7 19.2 68 139-220 145-214 (393)
78 PF13738 Pyr_redox_3: Pyridine 99.2 6.4E-11 1.4E-15 106.4 7.1 133 54-212 1-139 (203)
79 PRK12409 D-amino acid dehydrog 99.1 8.7E-09 1.9E-13 103.2 22.4 71 140-218 194-266 (410)
80 PF01134 GIDA: Glucose inhibit 99.1 7.7E-10 1.7E-14 106.7 13.1 139 52-209 1-150 (392)
81 KOG2820 FAD-dependent oxidored 99.1 9.7E-09 2.1E-13 94.4 19.4 154 48-211 5-212 (399)
82 PF12831 FAD_oxidored: FAD dep 99.1 2.6E-11 5.6E-16 121.4 3.0 149 52-219 1-157 (428)
83 TIGR01373 soxB sarcosine oxida 99.1 2.3E-08 5.1E-13 99.9 24.2 38 46-83 26-65 (407)
84 PRK00711 D-amino acid dehydrog 99.1 2.4E-08 5.2E-13 100.2 24.2 65 140-218 198-265 (416)
85 PLN02172 flavin-containing mon 99.1 1.3E-09 2.8E-14 109.7 13.9 150 50-212 10-174 (461)
86 PLN02464 glycerol-3-phosphate 99.1 2.4E-08 5.2E-13 104.4 23.9 76 139-219 228-305 (627)
87 COG0578 GlpA Glycerol-3-phosph 99.1 2.3E-08 5E-13 99.8 22.5 207 139-359 160-387 (532)
88 TIGR01292 TRX_reduct thioredox 99.1 1.5E-09 3.3E-14 103.7 13.5 113 51-212 1-113 (300)
89 PRK01747 mnmC bifunctional tRN 99.1 1.1E-08 2.4E-13 108.4 20.3 60 139-212 404-464 (662)
90 COG0492 TrxB Thioredoxin reduc 99.0 1.9E-09 4.2E-14 101.8 12.3 114 49-212 2-116 (305)
91 PLN02661 Putative thiazole syn 99.0 5E-09 1.1E-13 99.6 14.5 144 48-212 90-245 (357)
92 PRK11101 glpA sn-glycerol-3-ph 99.0 5.7E-08 1.2E-12 100.4 23.1 73 139-218 145-219 (546)
93 KOG1399 Flavin-containing mono 99.0 2.5E-09 5.3E-14 105.8 12.4 145 48-211 4-153 (448)
94 COG2072 TrkA Predicted flavopr 99.0 4.2E-09 9E-14 105.5 13.8 136 46-212 4-145 (443)
95 COG0579 Predicted dehydrogenas 99.0 3.4E-09 7.5E-14 103.5 12.5 72 139-221 149-222 (429)
96 TIGR00136 gidA glucose-inhibit 99.0 3.2E-09 6.9E-14 107.8 12.5 143 51-211 1-154 (617)
97 PRK06481 fumarate reductase fl 99.0 2.8E-09 6E-14 109.1 11.9 36 48-83 59-94 (506)
98 KOG2853 Possible oxidoreductas 99.0 6.6E-08 1.4E-12 89.0 18.8 81 140-222 240-332 (509)
99 PTZ00383 malate:quinone oxidor 99.0 9.4E-09 2E-13 103.9 14.1 69 139-220 207-283 (497)
100 TIGR00275 flavoprotein, HI0933 99.0 3.7E-09 8.1E-14 105.0 10.7 140 54-211 1-160 (400)
101 TIGR03143 AhpF_homolog putativ 98.9 1.1E-08 2.4E-13 105.9 14.1 113 49-212 3-115 (555)
102 PRK08274 tricarballylate dehyd 98.9 9.2E-09 2E-13 104.7 12.6 35 49-83 3-37 (466)
103 PRK05257 malate:quinone oxidor 98.9 4.3E-08 9.3E-13 99.5 17.1 75 139-220 179-256 (494)
104 PRK07804 L-aspartate oxidase; 98.9 2.1E-08 4.6E-13 103.4 14.9 164 47-214 13-213 (541)
105 PRK05249 soluble pyridine nucl 98.9 3.7E-09 8E-14 107.5 9.2 146 46-212 1-150 (461)
106 PLN00128 Succinate dehydrogena 98.9 1.2E-08 2.5E-13 106.7 13.0 36 48-83 48-83 (635)
107 PRK06116 glutathione reductase 98.9 1.6E-09 3.4E-14 109.7 6.2 139 50-212 4-144 (450)
108 COG3380 Predicted NAD/FAD-depe 98.9 1.7E-08 3.8E-13 90.1 11.9 33 52-84 3-35 (331)
109 TIGR01424 gluta_reduc_2 glutat 98.9 2.2E-09 4.7E-14 108.4 7.1 139 50-211 2-142 (446)
110 PRK14694 putative mercuric red 98.9 3.4E-09 7.3E-14 107.8 8.5 39 45-83 1-39 (468)
111 PRK15317 alkyl hydroperoxide r 98.9 1.8E-08 3.9E-13 103.6 13.9 114 48-212 209-323 (517)
112 PRK13339 malate:quinone oxidor 98.9 3.7E-08 8.1E-13 99.3 15.2 75 139-220 180-257 (497)
113 TIGR01320 mal_quin_oxido malat 98.9 1.2E-08 2.6E-13 103.5 11.6 75 139-220 174-250 (483)
114 PRK06416 dihydrolipoamide dehy 98.9 1.3E-08 2.9E-13 103.4 11.9 36 48-83 2-37 (462)
115 COG0665 DadA Glycine/D-amino a 98.9 1.3E-07 2.8E-12 93.9 18.7 37 48-84 2-38 (387)
116 PRK08401 L-aspartate oxidase; 98.9 5.9E-09 1.3E-13 105.7 9.1 151 51-215 2-179 (466)
117 PF00890 FAD_binding_2: FAD bi 98.9 1.3E-08 2.8E-13 102.2 11.3 65 141-212 139-204 (417)
118 TIGR01421 gluta_reduc_1 glutat 98.9 2.6E-09 5.7E-14 107.8 6.3 35 49-83 1-35 (450)
119 TIGR03140 AhpF alkyl hydropero 98.9 2.5E-08 5.4E-13 102.5 13.3 113 48-211 210-323 (515)
120 PRK05976 dihydrolipoamide dehy 98.9 5.4E-09 1.2E-13 106.4 8.2 145 49-212 3-155 (472)
121 PTZ00058 glutathione reductase 98.9 6.8E-09 1.5E-13 106.6 8.7 56 44-99 42-98 (561)
122 PLN02576 protoporphyrinogen ox 98.8 6.3E-06 1.4E-10 84.7 30.6 35 49-83 11-46 (496)
123 PRK06370 mercuric reductase; V 98.8 3.6E-09 7.7E-14 107.5 6.2 35 49-83 4-38 (463)
124 PF00743 FMO-like: Flavin-bind 98.8 1.5E-08 3.4E-13 103.3 10.6 142 52-212 3-151 (531)
125 PRK06452 sdhA succinate dehydr 98.8 1.4E-08 2.9E-13 105.3 10.3 159 46-213 1-200 (566)
126 PRK09078 sdhA succinate dehydr 98.8 3.1E-08 6.8E-13 103.2 12.9 38 46-83 8-45 (598)
127 TIGR01813 flavo_cyto_c flavocy 98.8 1.6E-08 3.4E-13 102.2 10.3 152 52-212 1-193 (439)
128 PRK07121 hypothetical protein; 98.8 5.5E-08 1.2E-12 99.6 14.4 36 48-83 18-53 (492)
129 PTZ00139 Succinate dehydrogena 98.8 2.9E-08 6.3E-13 103.7 12.5 158 48-212 27-230 (617)
130 PLN02546 glutathione reductase 98.8 1.1E-08 2.4E-13 105.1 9.1 141 48-212 77-229 (558)
131 TIGR00551 nadB L-aspartate oxi 98.8 2.2E-08 4.8E-13 102.2 11.2 154 50-215 2-193 (488)
132 PRK10262 thioredoxin reductase 98.8 6.3E-08 1.4E-12 93.6 13.8 116 47-212 3-118 (321)
133 PRK11883 protoporphyrinogen ox 98.8 5.7E-06 1.2E-10 83.9 28.6 32 52-83 2-35 (451)
134 PRK07233 hypothetical protein; 98.8 1.8E-06 4E-11 87.1 24.7 32 52-83 1-32 (434)
135 TIGR00562 proto_IX_ox protopor 98.8 3.4E-06 7.3E-11 85.9 26.8 33 51-83 3-39 (462)
136 PRK06467 dihydrolipoamide dehy 98.8 9.1E-09 2E-13 104.5 7.8 144 49-212 3-149 (471)
137 PLN02507 glutathione reductase 98.8 1.5E-08 3.3E-13 103.4 9.4 146 48-212 23-180 (499)
138 PRK06069 sdhA succinate dehydr 98.8 1.7E-08 3.6E-13 105.1 9.8 38 46-83 1-41 (577)
139 KOG2844 Dimethylglycine dehydr 98.8 2.4E-07 5.1E-12 92.5 16.4 69 139-220 183-253 (856)
140 PRK07057 sdhA succinate dehydr 98.8 7.4E-08 1.6E-12 100.3 13.8 38 46-83 8-45 (591)
141 PRK07573 sdhA succinate dehydr 98.8 6.1E-08 1.3E-12 101.7 13.2 35 49-83 34-68 (640)
142 PRK06854 adenylylsulfate reduc 98.8 2.4E-08 5.3E-13 104.2 10.0 152 48-212 9-196 (608)
143 TIGR01812 sdhA_frdA_Gneg succi 98.8 4.2E-08 9.1E-13 102.2 11.8 64 144-215 130-195 (566)
144 PRK09231 fumarate reductase fl 98.8 4.6E-08 1E-12 101.6 11.9 36 48-83 2-39 (582)
145 PLN02815 L-aspartate oxidase 98.8 3.4E-08 7.4E-13 102.3 10.2 43 40-83 19-61 (594)
146 PRK07251 pyridine nucleotide-d 98.8 3.2E-08 7E-13 99.8 9.7 34 50-83 3-36 (438)
147 PRK07803 sdhA succinate dehydr 98.7 4.5E-08 9.8E-13 102.5 10.7 38 46-83 4-41 (626)
148 PRK06115 dihydrolipoamide dehy 98.7 2E-08 4.4E-13 101.9 7.8 34 50-83 3-36 (466)
149 PRK06175 L-aspartate oxidase; 98.7 1.8E-08 3.9E-13 101.0 7.2 34 49-83 3-36 (433)
150 TIGR03364 HpnW_proposed FAD de 98.7 8.3E-08 1.8E-12 94.5 11.8 33 51-83 1-33 (365)
151 PRK08010 pyridine nucleotide-d 98.7 3.3E-08 7.2E-13 99.8 9.1 34 50-83 3-36 (441)
152 PRK08275 putative oxidoreducta 98.7 1.6E-07 3.4E-12 97.4 14.2 158 48-213 7-202 (554)
153 PRK08205 sdhA succinate dehydr 98.7 1.2E-07 2.6E-12 98.8 13.3 35 48-83 3-37 (583)
154 TIGR01176 fum_red_Fp fumarate 98.7 1.1E-07 2.4E-12 98.6 12.6 155 49-213 2-197 (580)
155 TIGR02053 MerA mercuric reduct 98.7 2.3E-08 4.9E-13 101.7 6.8 33 51-83 1-33 (463)
156 PRK06327 dihydrolipoamide dehy 98.7 3.8E-08 8.3E-13 100.2 7.9 33 49-81 3-35 (475)
157 PRK12416 protoporphyrinogen ox 98.7 2.3E-05 5.1E-10 79.7 28.2 32 52-83 3-40 (463)
158 TIGR01350 lipoamide_DH dihydro 98.7 3.7E-08 8E-13 100.2 7.7 33 50-82 1-33 (461)
159 PRK09077 L-aspartate oxidase; 98.7 2E-07 4.3E-12 96.2 13.0 35 48-83 6-40 (536)
160 PRK07395 L-aspartate oxidase; 98.7 2.1E-07 4.6E-12 96.0 13.1 36 47-83 6-41 (553)
161 PRK06912 acoL dihydrolipoamide 98.7 4.2E-08 9.1E-13 99.5 7.8 142 52-212 2-145 (458)
162 PRK08958 sdhA succinate dehydr 98.7 2.3E-07 4.9E-12 96.6 13.3 35 49-83 6-40 (588)
163 PRK05945 sdhA succinate dehydr 98.7 4.6E-08 1E-12 101.7 8.0 34 50-83 3-38 (575)
164 PRK05335 tRNA (uracil-5-)-meth 98.7 1.1E-07 2.5E-12 92.7 10.0 110 51-168 3-125 (436)
165 PRK07818 dihydrolipoamide dehy 98.6 6.6E-08 1.4E-12 98.3 8.1 34 50-83 4-37 (466)
166 PRK07845 flavoprotein disulfid 98.6 5.8E-08 1.3E-12 98.6 7.6 146 52-212 3-152 (466)
167 PRK06263 sdhA succinate dehydr 98.6 2.1E-07 4.6E-12 96.3 11.9 34 49-83 6-39 (543)
168 PRK07843 3-ketosteroid-delta-1 98.6 5.8E-07 1.3E-11 93.1 15.0 38 46-83 3-40 (557)
169 PRK13748 putative mercuric red 98.6 1.3E-07 2.8E-12 98.6 10.2 35 49-83 97-131 (561)
170 PLN02676 polyamine oxidase 98.6 1.3E-05 2.9E-10 81.5 24.1 37 47-83 23-60 (487)
171 COG1249 Lpd Pyruvate/2-oxoglut 98.6 6.3E-08 1.4E-12 96.3 6.8 151 48-219 2-155 (454)
172 PRK08071 L-aspartate oxidase; 98.6 3.5E-07 7.6E-12 93.7 11.8 33 50-83 3-35 (510)
173 PRK08626 fumarate reductase fl 98.6 1.4E-07 3E-12 99.2 8.9 39 46-84 1-39 (657)
174 PRK12842 putative succinate de 98.6 1.1E-06 2.3E-11 91.6 15.3 37 47-83 6-42 (574)
175 PRK06134 putative FAD-binding 98.6 1.7E-06 3.8E-11 90.1 16.5 37 47-83 9-45 (581)
176 TIGR01438 TGR thioredoxin and 98.6 8.6E-08 1.9E-12 97.5 6.6 33 50-82 2-34 (484)
177 PTZ00052 thioredoxin reductase 98.6 8.2E-08 1.8E-12 98.1 6.4 33 50-82 5-37 (499)
178 TIGR00137 gid_trmFO tRNA:m(5)U 98.6 5.9E-07 1.3E-11 88.3 12.1 108 52-167 2-122 (433)
179 COG1231 Monoamine oxidase [Ami 98.6 1.7E-05 3.8E-10 76.8 21.7 36 48-83 5-40 (450)
180 PF13454 NAD_binding_9: FAD-NA 98.6 6.1E-07 1.3E-11 76.8 10.4 135 54-209 1-155 (156)
181 PF07992 Pyr_redox_2: Pyridine 98.5 5.7E-08 1.2E-12 87.0 4.1 32 52-83 1-32 (201)
182 PRK06292 dihydrolipoamide dehy 98.5 1.1E-07 2.3E-12 96.7 6.3 35 49-83 2-36 (460)
183 KOG0042 Glycerol-3-phosphate d 98.5 1.1E-06 2.4E-11 85.9 12.7 70 143-219 224-295 (680)
184 PRK08641 sdhA succinate dehydr 98.5 3.1E-07 6.7E-12 95.7 9.6 34 50-83 3-36 (589)
185 PRK12844 3-ketosteroid-delta-1 98.5 4.1E-07 8.9E-12 94.2 10.4 35 49-83 5-39 (557)
186 PLN02487 zeta-carotene desatur 98.5 6E-05 1.3E-09 77.7 25.6 35 49-83 74-108 (569)
187 PTZ00153 lipoamide dehydrogena 98.5 3.4E-07 7.4E-12 95.6 9.4 34 49-82 115-148 (659)
188 PRK07512 L-aspartate oxidase; 98.5 2.6E-07 5.6E-12 94.8 8.4 37 46-84 5-41 (513)
189 TIGR01423 trypano_reduc trypan 98.5 2.2E-07 4.7E-12 94.4 7.5 34 49-82 2-36 (486)
190 PF13450 NAD_binding_8: NAD(P) 98.5 1.3E-07 2.8E-12 68.3 4.2 29 55-83 1-29 (68)
191 PRK14727 putative mercuric red 98.5 6.9E-07 1.5E-11 91.1 10.9 37 47-83 13-49 (479)
192 PRK12839 hypothetical protein; 98.5 2E-06 4.4E-11 89.2 14.0 36 48-83 6-41 (572)
193 PRK12845 3-ketosteroid-delta-1 98.5 1.3E-06 2.7E-11 90.4 12.2 36 47-83 13-48 (564)
194 TIGR02061 aprA adenosine phosp 98.5 1E-06 2.2E-11 91.5 11.3 32 52-83 1-36 (614)
195 PRK12779 putative bifunctional 98.5 5.5E-07 1.2E-11 98.0 9.4 35 49-83 305-339 (944)
196 PRK12834 putative FAD-binding 98.5 9.5E-07 2.1E-11 91.6 10.9 35 49-83 3-37 (549)
197 PTZ00306 NADH-dependent fumara 98.5 7.6E-07 1.6E-11 99.6 10.8 36 48-83 407-442 (1167)
198 PF00070 Pyr_redox: Pyridine n 98.5 3.8E-06 8.3E-11 62.9 11.3 79 52-185 1-80 (80)
199 KOG2852 Possible oxidoreductas 98.4 1.1E-05 2.5E-10 72.9 15.8 153 51-212 11-209 (380)
200 KOG0404 Thioredoxin reductase 98.4 2.2E-06 4.7E-11 74.6 10.6 117 50-211 8-124 (322)
201 PRK12835 3-ketosteroid-delta-1 98.4 2E-06 4.4E-11 89.4 12.6 35 49-83 10-44 (584)
202 TIGR01811 sdhA_Bsu succinate d 98.4 7.2E-07 1.6E-11 93.1 9.2 31 53-83 1-31 (603)
203 PRK12837 3-ketosteroid-delta-1 98.4 2E-06 4.3E-11 88.4 11.5 34 49-83 6-39 (513)
204 PRK12843 putative FAD-binding 98.4 1.6E-06 3.5E-11 90.2 10.8 36 48-83 14-49 (578)
205 TIGR02485 CobZ_N-term precorri 98.4 1.9E-06 4.1E-11 86.9 10.8 61 143-214 123-186 (432)
206 PRK09897 hypothetical protein; 98.4 2.4E-06 5.1E-11 87.2 11.4 33 51-83 2-36 (534)
207 PRK13800 putative oxidoreducta 98.4 3.5E-06 7.7E-11 92.1 12.8 37 48-84 11-47 (897)
208 KOG2665 Predicted FAD-dependen 98.4 9.5E-06 2.1E-10 74.3 13.3 163 47-219 45-266 (453)
209 PF06039 Mqo: Malate:quinone o 98.3 2.7E-06 5.9E-11 82.7 9.8 74 140-220 178-254 (488)
210 PRK09853 putative selenate red 98.3 2.5E-06 5.5E-11 91.9 10.6 36 48-83 537-572 (1019)
211 PRK07846 mycothione reductase; 98.3 4.8E-07 1E-11 91.5 4.8 32 50-83 1-32 (451)
212 PF13434 K_oxygenase: L-lysine 98.3 3.2E-07 6.9E-12 88.7 3.3 156 50-217 2-165 (341)
213 COG3634 AhpF Alkyl hydroperoxi 98.3 1.6E-06 3.4E-11 80.3 6.7 113 49-210 210-324 (520)
214 TIGR03315 Se_ygfK putative sel 98.3 2.7E-06 6E-11 92.0 9.3 35 49-83 536-570 (1012)
215 KOG1335 Dihydrolipoamide dehyd 98.3 2.5E-06 5.5E-11 80.0 7.5 35 49-83 38-72 (506)
216 TIGR03452 mycothione_red mycot 98.2 1.1E-06 2.5E-11 88.8 5.5 47 50-98 2-49 (452)
217 COG1233 Phytoene dehydrogenase 98.2 1E-06 2.2E-11 89.8 4.8 34 50-83 3-36 (487)
218 PRK09564 coenzyme A disulfide 98.2 7.8E-06 1.7E-10 82.8 11.0 32 52-83 2-35 (444)
219 COG0445 GidA Flavin-dependent 98.2 3.8E-06 8.3E-11 82.7 8.1 143 50-211 4-158 (621)
220 PRK09754 phenylpropionate diox 98.2 1.6E-05 3.4E-10 79.2 12.3 107 51-212 4-113 (396)
221 COG2509 Uncharacterized FAD-de 98.2 2.4E-05 5.2E-10 75.6 12.6 86 143-240 173-264 (486)
222 TIGR01372 soxA sarcosine oxida 98.2 2.9E-05 6.4E-10 85.8 14.9 35 49-83 162-196 (985)
223 PRK13512 coenzyme A disulfide 98.2 1.2E-05 2.6E-10 81.1 10.8 32 52-83 3-36 (438)
224 PRK04965 NADH:flavorubredoxin 98.2 3E-05 6.4E-10 76.7 13.4 104 51-218 142-248 (377)
225 PTZ00318 NADH dehydrogenase-li 98.1 1.1E-05 2.3E-10 81.1 10.0 117 50-212 10-126 (424)
226 KOG3923 D-aspartate oxidase [A 98.1 6.7E-05 1.4E-09 68.4 13.2 50 139-212 147-196 (342)
227 TIGR03169 Nterm_to_SelD pyridi 98.1 9.3E-06 2E-10 79.9 8.4 105 52-212 1-108 (364)
228 COG1053 SdhA Succinate dehydro 98.1 1.5E-05 3.2E-10 81.9 9.6 39 46-84 2-40 (562)
229 PRK12778 putative bifunctional 98.1 8.5E-06 1.8E-10 87.8 7.8 35 49-83 430-464 (752)
230 COG0029 NadB Aspartate oxidase 98.0 2.3E-05 4.9E-10 76.7 9.4 154 52-214 9-199 (518)
231 COG1249 Lpd Pyruvate/2-oxoglut 98.0 0.00012 2.7E-09 73.1 14.9 105 47-214 170-275 (454)
232 PRK09754 phenylpropionate diox 98.0 5E-05 1.1E-09 75.6 12.1 97 51-212 145-242 (396)
233 PRK05249 soluble pyridine nucl 98.0 4.9E-05 1.1E-09 77.4 11.9 100 50-214 175-275 (461)
234 PRK06416 dihydrolipoamide dehy 98.0 4.9E-05 1.1E-09 77.3 11.7 102 50-213 172-274 (462)
235 COG4529 Uncharacterized protei 98.0 6.6E-05 1.4E-09 73.5 11.8 34 51-84 2-38 (474)
236 PRK04965 NADH:flavorubredoxin 98.0 4.2E-05 9.2E-10 75.6 10.5 33 51-83 3-37 (377)
237 KOG0029 Amine oxidase [Seconda 98.0 8.1E-06 1.8E-10 82.5 5.2 37 47-83 12-48 (501)
238 KOG2311 NAD/FAD-utilizing prot 98.0 2.5E-05 5.5E-10 75.4 8.0 146 48-210 26-185 (679)
239 COG3349 Uncharacterized conser 98.0 8.1E-06 1.8E-10 80.5 4.8 33 51-83 1-33 (485)
240 PRK07208 hypothetical protein; 97.9 9E-06 1.9E-10 83.2 5.2 35 49-83 3-37 (479)
241 TIGR02733 desat_CrtD C-3',4' d 97.9 8.3E-06 1.8E-10 83.7 4.9 33 51-83 2-34 (492)
242 TIGR02730 carot_isom carotene 97.9 9E-06 2E-10 83.4 4.9 64 143-218 229-293 (493)
243 TIGR01350 lipoamide_DH dihydro 97.9 0.00014 3E-09 74.1 13.3 102 50-214 170-272 (461)
244 PRK06116 glutathione reductase 97.9 7.3E-05 1.6E-09 75.8 11.0 99 50-212 167-266 (450)
245 TIGR00031 UDP-GALP_mutase UDP- 97.9 1.4E-05 3E-10 78.0 5.4 33 51-83 2-34 (377)
246 PLN02852 ferredoxin-NADP+ redu 97.9 1.7E-05 3.7E-10 80.0 6.0 36 48-83 24-61 (491)
247 COG3075 GlpB Anaerobic glycero 97.9 1.4E-05 3.1E-10 73.7 4.9 35 49-83 1-35 (421)
248 TIGR02053 MerA mercuric reduct 97.9 0.00017 3.8E-09 73.3 12.9 101 51-213 167-268 (463)
249 PRK12831 putative oxidoreducta 97.8 2E-05 4.4E-10 79.8 5.6 36 48-83 138-173 (464)
250 PRK06912 acoL dihydrolipoamide 97.8 0.00036 7.8E-09 70.9 14.3 100 50-213 170-270 (458)
251 PF00732 GMC_oxred_N: GMC oxid 97.8 1.3E-05 2.9E-10 76.4 3.7 33 51-83 1-34 (296)
252 PRK06327 dihydrolipoamide dehy 97.8 0.00027 5.9E-09 72.1 13.4 103 50-213 183-286 (475)
253 PRK05329 anaerobic glycerol-3- 97.8 2.3E-05 5E-10 77.8 5.3 35 49-83 1-35 (422)
254 PLN02268 probable polyamine ox 97.8 2E-05 4.2E-10 79.7 4.9 33 51-83 1-33 (435)
255 PRK06370 mercuric reductase; V 97.8 0.00025 5.4E-09 72.2 12.9 102 50-213 171-273 (463)
256 PRK05976 dihydrolipoamide dehy 97.8 0.00029 6.3E-09 71.9 13.3 102 50-213 180-283 (472)
257 PRK02106 choline dehydrogenase 97.8 2.2E-05 4.9E-10 81.7 5.3 38 46-83 1-39 (560)
258 PRK07251 pyridine nucleotide-d 97.8 0.00022 4.7E-09 72.1 12.3 98 50-213 157-255 (438)
259 PRK13512 coenzyme A disulfide 97.8 0.00021 4.5E-09 72.2 12.1 93 51-212 149-242 (438)
260 TIGR02734 crtI_fam phytoene de 97.8 1.8E-05 3.8E-10 81.5 4.2 63 143-217 219-282 (502)
261 PLN02568 polyamine oxidase 97.8 2.6E-05 5.6E-10 80.2 5.4 37 47-83 2-43 (539)
262 TIGR01421 gluta_reduc_1 glutat 97.8 0.0003 6.5E-09 71.2 13.0 101 50-213 166-267 (450)
263 PRK06115 dihydrolipoamide dehy 97.8 0.00041 9E-09 70.6 13.9 104 50-213 174-278 (466)
264 PRK07845 flavoprotein disulfid 97.8 0.00022 4.9E-09 72.5 12.0 99 51-214 178-277 (466)
265 PRK07818 dihydrolipoamide dehy 97.8 0.00039 8.6E-09 70.8 13.5 103 50-213 172-275 (466)
266 TIGR03385 CoA_CoA_reduc CoA-di 97.8 0.0003 6.5E-09 70.9 12.5 96 51-212 138-234 (427)
267 KOG0405 Pyridine nucleotide-di 97.8 9.4E-05 2E-09 68.9 7.9 147 48-214 18-168 (478)
268 COG3486 IucD Lysine/ornithine 97.8 7.2E-05 1.6E-09 71.4 7.2 150 47-214 2-160 (436)
269 COG0562 Glf UDP-galactopyranos 97.7 3.9E-05 8.5E-10 70.7 5.2 35 50-84 1-35 (374)
270 COG1252 Ndh NADH dehydrogenase 97.7 0.0001 2.2E-09 72.0 8.3 108 50-213 3-113 (405)
271 PLN02507 glutathione reductase 97.7 0.00035 7.6E-09 71.6 12.4 99 50-213 203-302 (499)
272 PTZ00363 rab-GDP dissociation 97.7 3.3E-05 7.1E-10 77.3 4.7 35 49-83 3-37 (443)
273 TIGR02731 phytoene_desat phyto 97.7 3.4E-05 7.4E-10 78.3 4.8 32 52-83 1-32 (453)
274 TIGR02462 pyranose_ox pyranose 97.7 4.5E-05 9.6E-10 77.9 5.5 35 51-85 1-35 (544)
275 TIGR02374 nitri_red_nirB nitri 97.7 8.9E-05 1.9E-09 80.1 8.0 105 53-212 1-109 (785)
276 TIGR01316 gltA glutamate synth 97.7 4.8E-05 1E-09 76.9 5.7 36 48-83 131-166 (449)
277 PRK06567 putative bifunctional 97.7 3.8E-05 8.3E-10 82.1 5.0 35 49-83 382-416 (1028)
278 COG1148 HdrA Heterodisulfide r 97.7 3.9E-05 8.4E-10 74.4 4.6 36 49-84 123-158 (622)
279 PRK12775 putative trifunctiona 97.7 5.2E-05 1.1E-09 83.5 6.2 35 49-83 429-463 (1006)
280 PRK14989 nitrite reductase sub 97.7 0.00017 3.6E-09 78.2 9.8 107 51-213 4-115 (847)
281 TIGR01423 trypano_reduc trypan 97.7 0.00059 1.3E-08 69.6 13.3 101 50-214 187-291 (486)
282 TIGR01424 gluta_reduc_2 glutat 97.7 0.00047 1E-08 69.8 12.6 98 50-212 166-264 (446)
283 PRK12810 gltD glutamate syntha 97.7 6E-05 1.3E-09 76.8 5.6 36 48-83 141-176 (471)
284 TIGR02374 nitri_red_nirB nitri 97.6 0.0004 8.8E-09 75.0 12.0 98 51-212 141-239 (785)
285 COG1232 HemY Protoporphyrinoge 97.6 4.9E-05 1.1E-09 75.2 4.6 32 52-83 2-35 (444)
286 PRK13977 myosin-cross-reactive 97.6 8.1E-05 1.8E-09 75.6 6.1 36 48-83 20-59 (576)
287 PRK07846 mycothione reductase; 97.6 0.00037 8E-09 70.6 10.9 98 50-213 166-264 (451)
288 PTZ00058 glutathione reductase 97.6 0.0007 1.5E-08 70.0 13.1 100 50-212 237-337 (561)
289 PRK12769 putative oxidoreducta 97.6 6.3E-05 1.4E-09 79.8 5.5 35 49-83 326-360 (654)
290 KOG4716 Thioredoxin reductase 97.6 0.00044 9.5E-09 64.3 10.1 47 47-93 16-62 (503)
291 PRK06467 dihydrolipoamide dehy 97.6 0.00072 1.6E-08 68.9 12.9 102 51-214 175-277 (471)
292 PRK14989 nitrite reductase sub 97.6 0.00059 1.3E-08 74.0 12.2 100 51-212 146-246 (847)
293 PRK11749 dihydropyrimidine deh 97.6 8.5E-05 1.8E-09 75.4 5.2 36 48-83 138-173 (457)
294 KOG2404 Fumarate reductase, fl 97.6 0.00057 1.2E-08 63.1 9.8 32 52-83 11-42 (477)
295 TIGR02732 zeta_caro_desat caro 97.6 7.3E-05 1.6E-09 76.1 4.7 32 52-83 1-32 (474)
296 PRK08010 pyridine nucleotide-d 97.5 0.0011 2.3E-08 67.1 12.9 97 51-213 159-256 (441)
297 PTZ00188 adrenodoxin reductase 97.5 0.0001 2.2E-09 73.5 5.2 35 49-83 38-73 (506)
298 PRK09564 coenzyme A disulfide 97.5 0.001 2.2E-08 67.4 12.7 97 51-212 150-247 (444)
299 PRK14727 putative mercuric red 97.5 0.0011 2.3E-08 67.8 12.6 97 51-214 189-286 (479)
300 TIGR01318 gltD_gamma_fam gluta 97.5 0.00014 3E-09 74.0 5.6 35 49-83 140-174 (467)
301 COG0446 HcaD Uncharacterized N 97.5 0.0014 3E-08 65.5 12.7 99 50-211 136-237 (415)
302 PRK14694 putative mercuric red 97.5 0.0013 2.8E-08 67.0 12.3 96 51-213 179-275 (468)
303 PRK12809 putative oxidoreducta 97.5 0.00015 3.3E-09 76.6 5.6 36 48-83 308-343 (639)
304 PLN02529 lysine-specific histo 97.5 0.00014 3E-09 76.9 5.2 35 49-83 159-193 (738)
305 TIGR01438 TGR thioredoxin and 97.5 0.0017 3.6E-08 66.3 12.9 100 51-213 181-281 (484)
306 PLN02785 Protein HOTHEAD 97.5 0.00016 3.4E-09 75.2 5.5 36 47-83 52-87 (587)
307 PLN02612 phytoene desaturase 97.5 0.00018 3.8E-09 74.9 5.8 36 48-83 91-126 (567)
308 PRK12814 putative NADPH-depend 97.4 0.00015 3.2E-09 76.7 5.3 35 49-83 192-226 (652)
309 PLN02328 lysine-specific histo 97.4 0.00016 3.5E-09 76.8 5.5 35 49-83 237-271 (808)
310 PTZ00052 thioredoxin reductase 97.4 0.0013 2.8E-08 67.5 11.9 97 51-213 183-280 (499)
311 COG2303 BetA Choline dehydroge 97.4 0.00014 3E-09 75.1 4.6 37 47-83 4-40 (542)
312 TIGR03452 mycothione_red mycot 97.4 0.0019 4.2E-08 65.4 12.4 97 50-212 169-266 (452)
313 COG3573 Predicted oxidoreducta 97.4 0.00024 5.3E-09 65.8 5.2 36 49-84 4-39 (552)
314 TIGR01292 TRX_reduct thioredox 97.4 0.0025 5.3E-08 60.7 12.3 96 51-212 142-239 (300)
315 KOG2960 Protein involved in th 97.3 0.00055 1.2E-08 59.4 6.5 34 50-83 76-111 (328)
316 PLN02546 glutathione reductase 97.3 0.0023 5E-08 66.3 12.4 100 50-213 252-352 (558)
317 PRK06292 dihydrolipoamide dehy 97.3 0.0028 6.1E-08 64.5 12.9 102 50-214 169-271 (460)
318 TIGR03378 glycerol3P_GlpB glyc 97.3 0.00026 5.7E-09 69.6 4.8 33 51-83 1-33 (419)
319 COG1206 Gid NAD(FAD)-utilizing 97.3 0.0006 1.3E-08 63.2 6.8 110 51-168 4-126 (439)
320 PRK13748 putative mercuric red 97.3 0.0024 5.2E-08 66.7 12.2 96 51-213 271-367 (561)
321 PTZ00318 NADH dehydrogenase-li 97.3 0.003 6.6E-08 63.5 12.3 91 52-211 175-280 (424)
322 PRK12770 putative glutamate sy 97.3 0.00037 7.9E-09 68.3 5.5 34 50-83 18-51 (352)
323 KOG1276 Protoporphyrinogen oxi 97.3 0.00029 6.4E-09 67.6 4.5 35 49-83 10-46 (491)
324 TIGR01317 GOGAT_sm_gam glutama 97.3 0.00033 7.1E-09 71.5 5.2 35 49-83 142-176 (485)
325 TIGR01810 betA choline dehydro 97.2 0.00025 5.4E-09 73.5 4.0 32 52-83 1-33 (532)
326 COG0493 GltD NADPH-dependent g 97.2 0.00037 8E-09 69.8 5.0 34 51-84 124-157 (457)
327 PRK12771 putative glutamate sy 97.2 0.0004 8.7E-09 72.4 5.3 34 50-83 137-170 (564)
328 TIGR03140 AhpF alkyl hydropero 97.2 0.003 6.6E-08 65.1 11.6 95 51-211 353-450 (515)
329 PRK10262 thioredoxin reductase 97.2 0.004 8.7E-08 60.1 11.2 102 51-212 147-249 (321)
330 KOG1800 Ferredoxin/adrenodoxin 97.1 0.00059 1.3E-08 64.5 4.7 34 50-83 20-55 (468)
331 COG2907 Predicted NAD/FAD-bind 97.1 0.00042 9.1E-09 64.7 3.6 34 49-83 7-40 (447)
332 TIGR02352 thiamin_ThiO glycine 97.1 0.021 4.6E-07 55.2 15.9 60 139-212 133-194 (337)
333 PRK13984 putative oxidoreducta 97.1 0.00074 1.6E-08 71.1 5.5 35 49-83 282-316 (604)
334 KOG0685 Flavin-containing amin 97.0 0.00086 1.9E-08 65.4 5.3 36 48-83 19-55 (498)
335 PF13434 K_oxygenase: L-lysine 97.0 0.0012 2.5E-08 64.1 6.3 139 48-210 188-340 (341)
336 PLN03000 amine oxidase 97.0 0.00074 1.6E-08 72.1 5.2 35 49-83 183-217 (881)
337 COG1252 Ndh NADH dehydrogenase 97.0 0.0046 1E-07 60.6 9.8 57 144-216 210-268 (405)
338 PLN02976 amine oxidase 97.0 0.00083 1.8E-08 74.4 5.0 36 48-83 691-726 (1713)
339 KOG0399 Glutamate synthase [Am 96.9 0.0011 2.4E-08 70.4 5.4 42 42-83 1777-1818(2142)
340 PTZ00153 lipoamide dehydrogena 96.9 0.01 2.3E-07 62.5 12.7 110 50-213 312-429 (659)
341 TIGR01316 gltA glutamate synth 96.9 0.014 3.1E-07 59.0 12.7 33 51-83 273-305 (449)
342 PRK15317 alkyl hydroperoxide r 96.8 0.01 2.2E-07 61.3 11.6 95 51-211 352-449 (517)
343 PRK12770 putative glutamate sy 96.7 0.018 4E-07 56.3 11.9 33 51-83 173-206 (352)
344 KOG3851 Sulfide:quinone oxidor 96.6 0.01 2.2E-07 55.1 8.3 37 47-83 36-74 (446)
345 KOG4254 Phytoene desaturase [C 96.6 0.0025 5.3E-08 61.8 4.5 64 144-219 265-329 (561)
346 PRK12831 putative oxidoreducta 96.6 0.031 6.8E-07 56.8 12.8 33 51-83 282-314 (464)
347 KOG1335 Dihydrolipoamide dehyd 96.6 0.019 4.1E-07 54.7 10.1 107 47-212 208-315 (506)
348 PRK11749 dihydropyrimidine deh 96.5 0.036 7.7E-07 56.4 12.2 34 50-83 273-307 (457)
349 KOG1336 Monodehydroascorbate/f 96.4 0.025 5.4E-07 55.6 10.3 100 50-212 213-314 (478)
350 PF01593 Amino_oxidase: Flavin 96.4 0.51 1.1E-05 47.0 20.5 59 143-214 209-268 (450)
351 TIGR03169 Nterm_to_SelD pyridi 96.4 0.04 8.7E-07 54.1 12.1 50 145-211 193-243 (364)
352 KOG1238 Glucose dehydrogenase/ 96.4 0.0032 6.9E-08 64.1 4.1 36 48-83 55-91 (623)
353 PF01210 NAD_Gly3P_dh_N: NAD-d 96.2 0.0059 1.3E-07 52.1 4.4 32 52-83 1-32 (157)
354 TIGR03862 flavo_PP4765 unchara 96.2 0.035 7.5E-07 54.3 10.0 66 141-220 84-161 (376)
355 TIGR01372 soxA sarcosine oxida 96.0 0.043 9.3E-07 61.1 11.1 99 51-218 318-420 (985)
356 PF02737 3HCDH_N: 3-hydroxyacy 95.9 0.011 2.3E-07 51.8 4.6 32 52-83 1-32 (180)
357 PRK06249 2-dehydropantoate 2-r 95.9 0.012 2.5E-07 56.6 5.3 36 48-83 3-38 (313)
358 PF03721 UDPG_MGDP_dh_N: UDP-g 95.8 0.011 2.3E-07 52.0 4.1 33 51-83 1-33 (185)
359 COG0569 TrkA K+ transport syst 95.8 0.011 2.4E-07 53.6 4.4 33 51-83 1-33 (225)
360 PRK12778 putative bifunctional 95.8 0.1 2.2E-06 56.5 12.4 33 51-83 571-604 (752)
361 TIGR03143 AhpF_homolog putativ 95.8 0.091 2E-06 54.8 11.6 33 51-83 144-176 (555)
362 COG1251 NirB NAD(P)H-nitrite r 95.8 0.034 7.5E-07 57.5 7.9 104 52-219 147-253 (793)
363 PRK12810 gltD glutamate syntha 95.6 0.14 3.1E-06 52.2 11.9 32 51-82 282-314 (471)
364 PF00996 GDI: GDP dissociation 95.6 0.015 3.3E-07 57.8 4.6 36 48-83 2-37 (438)
365 PLN02612 phytoene desaturase 95.4 2.5 5.5E-05 44.2 20.5 61 144-217 309-371 (567)
366 PF02558 ApbA: Ketopantoate re 95.4 0.025 5.4E-07 47.9 4.7 31 53-83 1-31 (151)
367 PRK05675 sdhA succinate dehydr 95.3 0.074 1.6E-06 55.6 8.9 64 143-213 126-191 (570)
368 PF00743 FMO-like: Flavin-bind 95.3 0.051 1.1E-06 56.0 7.5 33 51-83 184-216 (531)
369 PRK12779 putative bifunctional 95.2 0.22 4.8E-06 55.0 12.5 33 51-83 448-480 (944)
370 PRK05708 2-dehydropantoate 2-r 95.2 0.027 5.8E-07 53.9 4.8 34 50-83 2-35 (305)
371 PRK06129 3-hydroxyacyl-CoA deh 95.2 0.023 5E-07 54.4 4.3 32 52-83 4-35 (308)
372 PRK01438 murD UDP-N-acetylmura 95.2 0.024 5.3E-07 58.0 4.7 33 51-83 17-49 (480)
373 TIGR03377 glycerol3P_GlpA glyc 95.1 1.7 3.7E-05 44.9 18.3 74 139-219 124-199 (516)
374 PRK02705 murD UDP-N-acetylmura 95.1 0.025 5.4E-07 57.6 4.6 32 52-83 2-33 (459)
375 PLN02852 ferredoxin-NADP+ redu 95.1 0.29 6.2E-06 49.9 12.1 22 51-72 167-188 (491)
376 PRK07819 3-hydroxybutyryl-CoA 95.1 0.031 6.6E-07 52.9 4.8 32 52-83 7-38 (286)
377 TIGR01318 gltD_gamma_fam gluta 94.9 0.34 7.3E-06 49.4 12.3 34 50-83 282-316 (467)
378 KOG1346 Programmed cell death 94.8 0.092 2E-06 50.7 6.9 61 145-218 395-458 (659)
379 PRK08229 2-dehydropantoate 2-r 94.7 0.041 9E-07 53.5 4.8 33 51-83 3-35 (341)
380 PRK12921 2-dehydropantoate 2-r 94.6 0.045 9.7E-07 52.3 4.6 30 52-81 2-31 (305)
381 PRK06522 2-dehydropantoate 2-r 94.6 0.045 9.8E-07 52.3 4.6 32 52-83 2-33 (304)
382 PRK14106 murD UDP-N-acetylmura 94.5 0.054 1.2E-06 54.9 5.4 34 50-83 5-38 (450)
383 PRK12814 putative NADPH-depend 94.5 0.58 1.3E-05 49.8 13.2 34 50-83 323-357 (652)
384 PRK08293 3-hydroxybutyryl-CoA 94.4 0.049 1.1E-06 51.6 4.4 32 52-83 5-36 (287)
385 KOG2495 NADH-dehydrogenase (ub 94.4 0.37 8.1E-06 47.0 10.1 55 145-212 275-330 (491)
386 PRK07066 3-hydroxybutyryl-CoA 94.4 0.051 1.1E-06 52.0 4.4 32 52-83 9-40 (321)
387 KOG1336 Monodehydroascorbate/f 94.3 0.26 5.6E-06 48.7 9.1 41 154-209 138-179 (478)
388 PRK09853 putative selenate red 94.3 0.6 1.3E-05 51.4 12.8 33 51-83 669-703 (1019)
389 PRK09260 3-hydroxybutyryl-CoA 94.3 0.051 1.1E-06 51.5 4.3 32 52-83 3-34 (288)
390 PRK06719 precorrin-2 dehydroge 94.3 0.069 1.5E-06 45.5 4.6 31 50-80 13-43 (157)
391 PF01262 AlaDh_PNT_C: Alanine 94.3 0.071 1.5E-06 46.0 4.8 34 50-83 20-53 (168)
392 PRK12769 putative oxidoreducta 94.1 0.7 1.5E-05 49.3 12.8 33 51-83 469-502 (654)
393 PRK06035 3-hydroxyacyl-CoA deh 94.1 0.06 1.3E-06 51.1 4.2 32 52-83 5-36 (291)
394 PRK07530 3-hydroxybutyryl-CoA 94.0 0.063 1.4E-06 51.0 4.2 32 52-83 6-37 (292)
395 TIGR01470 cysG_Nterm siroheme 93.9 0.087 1.9E-06 47.1 4.7 32 51-82 10-41 (205)
396 PRK05808 3-hydroxybutyryl-CoA 93.8 0.07 1.5E-06 50.4 4.2 32 52-83 5-36 (282)
397 PRK14619 NAD(P)H-dependent gly 93.8 0.097 2.1E-06 50.1 5.2 34 50-83 4-37 (308)
398 PF02254 TrkA_N: TrkA-N domain 93.8 0.083 1.8E-06 42.3 4.0 31 53-83 1-31 (116)
399 COG1004 Ugd Predicted UDP-gluc 93.8 0.074 1.6E-06 51.3 4.2 33 51-83 1-33 (414)
400 PRK14620 NAD(P)H-dependent gly 93.8 0.083 1.8E-06 51.1 4.6 32 52-83 2-33 (326)
401 PRK06130 3-hydroxybutyryl-CoA 93.7 0.095 2.1E-06 50.3 4.9 32 52-83 6-37 (311)
402 cd05292 LDH_2 A subgroup of L- 93.7 0.091 2E-06 50.3 4.7 33 52-84 2-36 (308)
403 TIGR03315 Se_ygfK putative sel 93.5 1.1 2.3E-05 49.7 12.9 34 50-83 666-701 (1012)
404 TIGR02354 thiF_fam2 thiamine b 93.5 0.12 2.6E-06 46.0 4.8 34 50-83 21-55 (200)
405 PF13241 NAD_binding_7: Putati 93.4 0.067 1.4E-06 42.0 2.8 33 50-82 7-39 (103)
406 PLN02545 3-hydroxybutyryl-CoA 93.4 0.11 2.4E-06 49.4 4.8 32 52-83 6-37 (295)
407 PF13478 XdhC_C: XdhC Rossmann 93.4 0.098 2.1E-06 43.3 3.8 32 53-84 1-32 (136)
408 PRK06718 precorrin-2 dehydroge 93.4 0.14 3E-06 45.6 5.0 33 50-82 10-42 (202)
409 TIGR00518 alaDH alanine dehydr 93.4 0.11 2.3E-06 51.1 4.7 34 50-83 167-200 (370)
410 PF00056 Ldh_1_N: lactate/mala 93.3 0.15 3.3E-06 42.6 4.9 33 51-83 1-36 (141)
411 PRK09424 pntA NAD(P) transhydr 93.3 0.095 2.1E-06 53.3 4.2 34 50-83 165-198 (509)
412 TIGR01763 MalateDH_bact malate 93.1 0.14 3E-06 48.9 5.0 33 51-83 2-35 (305)
413 KOG1346 Programmed cell death 93.1 0.2 4.2E-06 48.5 5.8 135 47-212 175-312 (659)
414 PF10727 Rossmann-like: Rossma 93.1 0.077 1.7E-06 43.2 2.7 37 47-83 7-43 (127)
415 TIGR03026 NDP-sugDHase nucleot 93.1 0.1 2.2E-06 52.2 4.2 32 52-83 2-33 (411)
416 PLN02976 amine oxidase 93.0 19 0.00041 41.7 21.3 57 320-379 1150-1207(1713)
417 TIGR03197 MnmC_Cterm tRNA U-34 93.0 0.16 3.4E-06 50.3 5.3 60 139-212 131-191 (381)
418 COG5044 MRS6 RAB proteins gera 93.0 0.15 3.3E-06 48.5 4.8 37 47-83 3-39 (434)
419 PRK00066 ldh L-lactate dehydro 92.9 0.19 4E-06 48.2 5.5 38 47-84 3-42 (315)
420 PRK14618 NAD(P)H-dependent gly 92.9 0.14 2.9E-06 49.6 4.6 33 51-83 5-37 (328)
421 KOG2304 3-hydroxyacyl-CoA dehy 92.9 0.13 2.8E-06 45.5 3.9 33 51-83 12-44 (298)
422 PLN02695 GDP-D-mannose-3',5'-e 92.8 0.19 4.1E-06 49.5 5.6 45 39-83 10-55 (370)
423 PRK00094 gpsA NAD(P)H-dependen 92.8 0.13 2.8E-06 49.6 4.3 32 52-83 3-34 (325)
424 PRK11064 wecC UDP-N-acetyl-D-m 92.8 0.14 3E-06 51.2 4.6 33 51-83 4-36 (415)
425 PRK04148 hypothetical protein; 92.7 0.13 2.7E-06 42.2 3.4 32 51-83 18-49 (134)
426 PRK12775 putative trifunctiona 92.6 1.8 3.8E-05 48.5 13.3 33 50-82 571-604 (1006)
427 PF00899 ThiF: ThiF family; I 92.6 0.17 3.6E-06 41.9 4.2 34 50-83 2-36 (135)
428 PF13738 Pyr_redox_3: Pyridine 92.6 0.13 2.9E-06 45.6 3.8 34 50-83 167-200 (203)
429 PRK07417 arogenate dehydrogena 92.6 0.13 2.8E-06 48.5 3.9 32 52-83 2-33 (279)
430 cd00401 AdoHcyase S-adenosyl-L 92.5 0.17 3.6E-06 50.2 4.6 33 51-83 203-235 (413)
431 PF01488 Shikimate_DH: Shikima 92.1 0.31 6.7E-06 40.3 5.2 34 50-83 12-46 (135)
432 PLN02657 3,8-divinyl protochlo 92.1 0.4 8.6E-06 47.6 6.9 35 49-83 59-94 (390)
433 PF03446 NAD_binding_2: NAD bi 92.0 0.25 5.4E-06 42.4 4.7 33 51-83 2-34 (163)
434 TIGR01915 npdG NADPH-dependent 92.0 0.22 4.8E-06 45.1 4.5 32 52-83 2-34 (219)
435 COG1893 ApbA Ketopantoate redu 92.0 0.18 3.9E-06 48.1 4.1 33 51-83 1-33 (307)
436 PRK15057 UDP-glucose 6-dehydro 91.9 0.18 3.9E-06 49.8 4.1 31 52-83 2-32 (388)
437 PTZ00082 L-lactate dehydrogena 91.9 0.3 6.6E-06 46.9 5.5 34 51-84 7-41 (321)
438 cd01080 NAD_bind_m-THF_DH_Cycl 91.9 0.29 6.2E-06 42.2 4.8 35 49-83 43-78 (168)
439 PRK12475 thiamine/molybdopteri 91.9 0.24 5.3E-06 47.9 4.9 34 50-83 24-58 (338)
440 TIGR02279 PaaC-3OHAcCoADH 3-hy 91.8 0.19 4.1E-06 51.5 4.2 32 52-83 7-38 (503)
441 PLN02353 probable UDP-glucose 91.7 0.22 4.7E-06 50.5 4.5 33 51-83 2-36 (473)
442 PRK10669 putative cation:proto 91.6 0.19 4.1E-06 52.5 4.1 34 50-83 417-450 (558)
443 PRK06223 malate dehydrogenase; 91.5 0.27 5.8E-06 47.1 4.8 34 51-84 3-37 (307)
444 PRK07531 bifunctional 3-hydrox 91.5 0.26 5.5E-06 50.6 4.9 32 52-83 6-37 (495)
445 TIGR03467 HpnE squalene-associ 91.4 16 0.00035 36.2 19.3 58 146-217 200-259 (419)
446 PF01593 Amino_oxidase: Flavin 91.4 0.18 3.8E-06 50.3 3.6 33 321-356 418-450 (450)
447 TIGR02356 adenyl_thiF thiazole 91.3 0.34 7.4E-06 43.2 4.9 34 50-83 21-55 (202)
448 TIGR03378 glycerol3P_GlpB glyc 91.3 0.86 1.9E-05 45.2 8.1 67 140-217 260-330 (419)
449 TIGR02732 zeta_caro_desat caro 91.2 14 0.0003 37.7 17.2 65 145-217 221-289 (474)
450 PRK07502 cyclohexadienyl dehyd 91.2 0.26 5.7E-06 47.1 4.4 33 51-83 7-41 (307)
451 TIGR02964 xanthine_xdhC xanthi 91.2 0.31 6.8E-06 44.8 4.6 35 50-84 100-134 (246)
452 PRK15116 sulfur acceptor prote 91.2 0.34 7.4E-06 45.0 4.9 34 50-83 30-64 (268)
453 PRK08268 3-hydroxy-acyl-CoA de 91.1 0.31 6.7E-06 50.0 4.9 32 52-83 9-40 (507)
454 PRK07688 thiamine/molybdopteri 91.1 0.34 7.3E-06 47.0 4.9 34 50-83 24-58 (339)
455 cd01487 E1_ThiF_like E1_ThiF_l 91.0 0.37 8E-06 41.8 4.7 32 52-83 1-33 (174)
456 PLN02572 UDP-sulfoquinovose sy 91.0 0.54 1.2E-05 47.5 6.6 32 51-82 48-80 (442)
457 COG1748 LYS9 Saccharopine dehy 90.9 0.33 7.2E-06 47.4 4.7 33 51-83 2-35 (389)
458 PRK11730 fadB multifunctional 90.8 0.28 6.1E-06 52.6 4.5 32 52-83 315-346 (715)
459 PRK09496 trkA potassium transp 90.8 0.28 6.1E-06 49.8 4.4 32 52-83 2-33 (453)
460 KOG4405 GDP dissociation inhib 90.8 0.26 5.6E-06 47.6 3.7 36 48-83 6-41 (547)
461 PRK11559 garR tartronate semia 90.7 0.34 7.3E-06 46.1 4.5 33 51-83 3-35 (296)
462 PRK04308 murD UDP-N-acetylmura 90.6 0.42 9.1E-06 48.4 5.4 33 51-83 6-38 (445)
463 PLN00016 RNA-binding protein; 90.6 0.34 7.5E-06 47.8 4.7 36 48-83 50-90 (378)
464 TIGR02730 carot_isom carotene 90.6 0.89 1.9E-05 46.7 7.8 33 51-83 1-33 (493)
465 cd05291 HicDH_like L-2-hydroxy 90.5 0.37 8E-06 46.1 4.7 33 52-84 2-36 (306)
466 TIGR00561 pntA NAD(P) transhyd 90.5 0.36 7.8E-06 49.1 4.7 34 50-83 164-197 (511)
467 TIGR02437 FadB fatty oxidation 90.4 0.32 7E-06 52.1 4.5 32 52-83 315-346 (714)
468 TIGR00936 ahcY adenosylhomocys 90.4 0.36 7.8E-06 47.7 4.5 33 51-83 196-228 (406)
469 PRK12809 putative oxidoreducta 90.3 4.1 8.8E-05 43.4 12.6 34 50-83 451-485 (639)
470 cd01483 E1_enzyme_family Super 90.2 0.5 1.1E-05 39.4 4.7 32 52-83 1-33 (143)
471 PRK08306 dipicolinate synthase 90.2 0.42 9E-06 45.4 4.7 34 50-83 152-185 (296)
472 COG3486 IucD Lysine/ornithine 90.2 3.1 6.7E-05 40.6 10.4 51 157-214 292-343 (436)
473 PRK13984 putative oxidoreducta 90.2 2.3 4.9E-05 45.0 10.7 34 320-359 568-601 (604)
474 KOG2495 NADH-dehydrogenase (ub 90.1 3.4 7.4E-05 40.5 10.6 40 44-83 49-88 (491)
475 PRK02472 murD UDP-N-acetylmura 90.1 0.45 9.7E-06 48.2 5.1 33 51-83 6-38 (447)
476 PRK03659 glutathione-regulated 90.1 0.34 7.3E-06 51.0 4.3 34 50-83 400-433 (601)
477 PRK11199 tyrA bifunctional cho 90.1 0.46 9.9E-06 46.8 5.0 34 49-82 97-131 (374)
478 PRK08644 thiamine biosynthesis 90.1 0.52 1.1E-05 42.3 4.9 34 50-83 28-62 (212)
479 cd05293 LDH_1 A subgroup of L- 90.0 0.52 1.1E-05 45.1 5.2 34 50-83 3-38 (312)
480 TIGR02355 moeB molybdopterin s 90.0 0.49 1.1E-05 43.4 4.8 34 50-83 24-58 (240)
481 PRK03369 murD UDP-N-acetylmura 89.9 0.38 8.2E-06 49.3 4.4 33 51-83 13-45 (488)
482 TIGR01505 tartro_sem_red 2-hyd 89.9 0.35 7.6E-06 45.9 4.0 32 52-83 1-32 (291)
483 cd01339 LDH-like_MDH L-lactate 89.9 0.38 8.2E-06 45.9 4.2 31 53-83 1-32 (300)
484 TIGR02441 fa_ox_alpha_mit fatt 89.9 0.34 7.3E-06 52.1 4.2 32 52-83 337-368 (737)
485 PRK05690 molybdopterin biosynt 89.7 0.54 1.2E-05 43.3 4.9 34 50-83 32-66 (245)
486 COG0287 TyrA Prephenate dehydr 89.7 0.55 1.2E-05 44.0 4.9 34 50-83 3-36 (279)
487 PRK01710 murD UDP-N-acetylmura 89.7 0.44 9.5E-06 48.5 4.6 32 52-83 16-47 (458)
488 PTZ00117 malate dehydrogenase; 89.6 0.55 1.2E-05 45.1 5.0 35 50-84 5-40 (319)
489 COG0686 Ald Alanine dehydrogen 89.6 0.32 6.9E-06 45.4 3.2 35 49-83 167-201 (371)
490 PRK12771 putative glutamate sy 89.6 5.1 0.00011 41.9 12.6 34 50-83 267-301 (564)
491 PRK12549 shikimate 5-dehydroge 89.6 0.5 1.1E-05 44.6 4.6 33 51-83 128-161 (284)
492 TIGR03736 PRTRC_ThiF PRTRC sys 89.6 0.56 1.2E-05 43.0 4.7 36 48-83 9-55 (244)
493 cd05311 NAD_bind_2_malic_enz N 89.5 0.57 1.2E-05 42.5 4.8 34 50-83 25-61 (226)
494 COG1063 Tdh Threonine dehydrog 89.4 0.46 9.9E-06 46.4 4.4 32 52-83 171-203 (350)
495 PF06100 Strep_67kDa_ant: Stre 89.4 0.6 1.3E-05 46.8 5.1 33 51-83 3-39 (500)
496 cd01075 NAD_bind_Leu_Phe_Val_D 89.3 0.67 1.4E-05 41.2 5.0 33 51-83 29-61 (200)
497 COG1250 FadB 3-hydroxyacyl-CoA 89.3 0.46 1E-05 44.9 4.1 32 52-83 5-36 (307)
498 TIGR00872 gnd_rel 6-phosphoglu 89.3 0.45 9.8E-06 45.3 4.1 32 52-83 2-33 (298)
499 PLN03000 amine oxidase 89.2 39 0.00084 37.1 18.7 39 320-361 587-625 (881)
500 cd01078 NAD_bind_H4MPT_DH NADP 89.2 0.68 1.5E-05 40.9 5.0 34 50-83 28-62 (194)
No 1
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=100.00 E-value=2.3e-58 Score=459.43 Aligned_cols=428 Identities=84% Similarity=1.346 Sum_probs=358.0
Q ss_pred cceeccccCCCCCCCCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccc
Q 012488 34 KFRVSAAKTSPKLTNRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVT 113 (462)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~ 113 (462)
.+.+.+.+++++|+.+++||+||||||||+++|+.|+++|++|+|+||+.+..+.||++++...++++++++.++.+.+.
T Consensus 23 ~~~~~~~~~~~~~~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~ 102 (450)
T PLN00093 23 GLRVLAAAASKKLSGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVT 102 (450)
T ss_pred cceeeecCCCCCcCCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhh
Confidence 34455566667788999999999999999999999999999999999987666789999999999999999888888788
Q ss_pred eEEEEcCCCceEeccCcccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcceeEEEEecCCCCCCEEEEEeccCCccCCCC
Q 012488 114 KMKMISPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVG 193 (462)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 193 (462)
.+.++++.+..++++.......+..+++|..|+++|.+++.+.|++++.++++++......++.++|++.+.. .....+
T Consensus 103 ~~~~~~p~~~~v~~~~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~~v~~i~~~~~~~~~~~v~~~~~~-~~~~~g 181 (450)
T PLN00093 103 KMKMISPSNVAVDIGKTLKPHEYIGMVRREVLDSFLRERAQSNGATLINGLFTRIDVPKDPNGPYVIHYTSYD-SGSGAG 181 (450)
T ss_pred hheEecCCceEEEecccCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEeceEEEEEeccCCCCcEEEEEEecc-ccccCC
Confidence 8888888877666654334455666799999999999999999999988877777632223345667665420 000113
Q ss_pred ceeEEEecEEEecCCCChHhhhhhcCCCCceEEEEEEEEecCCcccccccCeeEEEecCCCCCCeEEEEEeCCCceEEEE
Q 012488 194 EKRTLEVDAVIGADGANSRVAKSINAGDYDYAIAFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGT 273 (462)
Q Consensus 194 ~~~~~~adlvI~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p~~~~~~v~~ 273 (462)
+..+++||+||+|||.+|.+|+.++.....+..+++..+..+.....++++..+++++.++.|++|+|+||.++..++|.
T Consensus 182 ~~~~v~a~~VIgADG~~S~vrr~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~Y~WifP~g~~~~VG~ 261 (450)
T PLN00093 182 TPKTLEVDAVIGADGANSRVAKDIDAGDYDYAIAFQERIKIPDDKMEYYEDLAEMYVGDDVSPDFYGWVFPKCDHVAVGT 261 (450)
T ss_pred CccEEEeCEEEEcCCcchHHHHHhCCCCcceeEEEEEEEeCChhhccccCCeEEEEeCCCCCCCceEEEEECCCcEEEEE
Confidence 34689999999999999999999988766677777776666665555666778899998899999999999998888888
Q ss_pred EeccCCCcHHHHHHHHHHhhhcccCCCeEEeEEeeecCCCCCCcccCCCEEEEccCCcCcccCCcccHHHHHHHHHHHHH
Q 012488 274 GTVTHKGDIKKFQLATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAE 353 (462)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~v~liGDAAh~~~P~~G~G~~~a~~da~~la~ 353 (462)
+.......++.+.+.+.+.+...+.++++.+...+++|..+.+++..+|++|+|||||+++|++|+||++||.+|.++++
T Consensus 262 g~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~ip~~~~~~~~~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe 341 (450)
T PLN00093 262 GTVVNKPAIKKYQRATRNRAKDKIAGGKIIRVEAHPIPEHPRPRRVRGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAE 341 (450)
T ss_pred EEccCCCChHHHHHHHHHHhhhhcCCCeEEEEEEEEcccccccceeCCCcEEEeccccCCCccccccHHHHHHHHHHHHH
Confidence 76555566777777766655555656777788889999887778889999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCChhHHHHHHHHHHHhhhhHHHHHHHhHhhhccCchhHHHHHHHhccccccccChhhHhhhhhcCCCC
Q 012488 354 AIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKRVVPGNP 433 (462)
Q Consensus 354 ~l~~a~~~~~~~~~~~~L~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 433 (462)
.+.++++.++...+...|+.|++.|++.+.+.++....++++|+.+++.++.+++.+.+..++++++++++.|++++.+|
T Consensus 342 ~i~~~~~~g~~~~s~~~L~~Y~~~~~~~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~k~l~~~~~ 421 (450)
T PLN00093 342 AIVEGSENGTRMVDEADLREYLRKWDKKYWPTYKVLDILQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKRVVPGNP 421 (450)
T ss_pred HHHHHHhcCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHhhhhhHHHHhHHHHHHHHhhCCCh
Confidence 99999876643356788999999999999999999999999999988899999999999999999999999999999999
Q ss_pred hhHHHHHHHHhhhhhcccccCccccCCCC
Q 012488 434 LEDLKLAVNTIGSLVRANALRREMDKLTI 462 (462)
Q Consensus 434 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 462 (462)
+..+|.+||++++|+++++++++++.+++
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (450)
T PLN00093 422 LDDIKLLVNTIGSLVRANALRREMEKLSV 450 (450)
T ss_pred HHHHHHHHHHHHHHHhccccCccccccCC
Confidence 99999999999999999999998877653
No 2
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=100.00 E-value=1.9e-52 Score=413.77 Aligned_cols=398 Identities=74% Similarity=1.215 Sum_probs=328.2
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEeccCc
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQT 130 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (462)
+||+||||||||+++|+.|+++|++|+|+||..+..+.||++++...+++++++++++.+.+.+..++++++..+.+...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~ 80 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRT 80 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccC
Confidence 58999999999999999999999999999998766678999999999999999988888788888888888776666543
Q ss_pred ccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcceeEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCCC
Q 012488 131 LKPHEYIGMVRREVLDAYLRERAEKNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGAN 210 (462)
Q Consensus 131 ~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~ 210 (462)
.....+.++++|..|+++|.+++.+.|++++.+++.++......++.+.|++...+ ....+++..+++|++||+|||.+
T Consensus 81 ~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~~~~i~~~~~~~~~~~v~~~~~~-~~~~~g~~~~i~a~~VIgADG~~ 159 (398)
T TIGR02028 81 LKEHEYIGMLRREVLDSFLRRRAADAGATLINGLVTKLSLPADADDPYTLHYISSD-SGGPSGTRCTLEVDAVIGADGAN 159 (398)
T ss_pred CCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcceEEEEEeccCCCceEEEEEeecc-ccccCCCccEEEeCEEEECCCcc
Confidence 33445555799999999999999999999998887666532223344566553210 00012344689999999999999
Q ss_pred hHhhhhhcCCCCceEEEEEEEEecCCcccccccCeeEEEecCCCCCCeEEEEEeCCCceEEEEEeccCCCcHHHHHHHHH
Q 012488 211 SRVAKSINAGDYDYAIAFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKGDIKKFQLATR 290 (462)
Q Consensus 211 S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p~~~~~~v~~~~~~~~~~~~~~~~~~~ 290 (462)
|.+|+.++.....+...+...+..+.....++++..+++++..+.|++|+|+||.++..++|++.......++.+.+.+.
T Consensus 160 S~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~gY~WifP~~~~~~VG~g~~~~~~~~~~~~~~l~ 239 (398)
T TIGR02028 160 SRVAKEIDAGDYSYAIAFQERIRLPDEKMAYYDDLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVAAKPEIKRLQSGIR 239 (398)
T ss_pred hHHHHHhCCCCcceEEEEEEEeeCChhhcccCCCeEEEEeCCCCCCCceEEEEECCCeEEEEEEeCCCCccHHHHHHhhh
Confidence 99999998876666677766666665555555667788999888999999999999887888886555556667766665
Q ss_pred HhhhcccCCCeEEeEEeeecCCCCCCcccCCCEEEEccCCcCcccCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCChhH
Q 012488 291 NRAKDKILGGKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIIEGSENGTRMIDEGD 370 (462)
Q Consensus 291 ~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~v~liGDAAh~~~P~~G~G~~~a~~da~~la~~l~~a~~~~~~~~~~~~ 370 (462)
......+.+.++.+...+++|..+.+++..+|++++|||||+++|++|+||++||.+|.++|+.+.++++.++...+...
T Consensus 240 ~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~~~~~~~~~~~~~~ 319 (398)
T TIGR02028 240 ARAAGKVAGGRIIRVEAHPIPEHPRPRRVVGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEESRLGGAVTEEGD 319 (398)
T ss_pred hhhhhccCCCcEEEEEEEeccccccccEECCCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHHHHhcCCCcCCHHH
Confidence 54334444566777888888887777888999999999999999999999999999999999999999877653356788
Q ss_pred HHHHHHHHHHhhhhHHHHHHHhHhhhccCchhHHHHHHHhccccccccChhhHhhhhhcCCCChhHHHHHHHHhhhhhc
Q 012488 371 LRKYLEKWDKTYWPTYKVLDVLQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKRVVPGNPLEDLKLAVNTIGSLVR 449 (462)
Q Consensus 371 L~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 449 (462)
|+.|++.|++.+.+.++....+++++++++...+.+++.+++..++++.+.+++.+++++.+|+..+|.++|.++++++
T Consensus 320 l~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (398)
T TIGR02028 320 LAGYLRRWDKEYRPTYRVLDLLQRVFYRSNAGREAFVEMCADEHVQKRTFDSYLYKRVAPAEPLGDLKLLWRTIGSLVR 398 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHhcCcchhhhhHHHhhhhhhhCCChHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999888999999999999999999988999999999999999999999999864
No 3
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=100.00 E-value=1.1e-49 Score=394.23 Aligned_cols=387 Identities=58% Similarity=0.940 Sum_probs=315.0
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEeccCc
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQT 130 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (462)
|||+||||||||+++|+.|++.|++|+|+|++.+..+.||++++.+.+++|++++++....+.+..++++++..+.....
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIP 80 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccC
Confidence 69999999999999999999999999999998544568999999999999999998888888888998887754433211
Q ss_pred ccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcceeEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCCC
Q 012488 131 LKPHEYIGMVRREVLDAYLRERAEKNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGAN 210 (462)
Q Consensus 131 ~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~ 210 (462)
....+..+++|..|+++|.+++.+.|++++.++|+++.. +++.+.+++.+++ ....++..+++||+||+|||.+
T Consensus 81 -~~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~~v~~v~~---~~~~~~v~~~~~~--~~~~~~~~~i~a~~VI~AdG~~ 154 (388)
T TIGR02023 81 -SEDGYVGMVRREVFDSYLRERAQKAGAELIHGLFLKLER---DRDGVTLTYRTPK--KGAGGEKGSVEADVVIGADGAN 154 (388)
T ss_pred -CCCCceEeeeHHHHHHHHHHHHHhCCCEEEeeEEEEEEE---cCCeEEEEEEecc--ccCCCcceEEEeCEEEECCCCC
Confidence 123344579999999999999999999998777877762 3445777776521 0012334689999999999999
Q ss_pred hHhhhhhcCC-CCceEEEEEEEEecCCcccccccCeeEEEecCCCCCCeEEEEEeCCCceEEEEEeccCCCcHHHHHHHH
Q 012488 211 SRVAKSINAG-DYDYAIAFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKGDIKKFQLAT 289 (462)
Q Consensus 211 S~vr~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p~~~~~~v~~~~~~~~~~~~~~~~~~ 289 (462)
|.+|++++.. ...+..+++..+..+.....+.++...++++....|++|+|+||.++..+++.+........+++.+.+
T Consensus 155 S~v~r~lg~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~y~wv~P~~~~~~vg~~~~~~~~~~~~~~~~l 234 (388)
T TIGR02023 155 SPVAKELGLPKNLPRVIAYQERIKLPDDKMAYYEELADVYYGGEVSPDFYGWVFPKGDHIAVGTGTGTHGFDAKQLQANL 234 (388)
T ss_pred cHHHHHcCCCCCCcEEEEEEEEecCCchhcccCCCeEEEEECCCcCCCceEEEeeCCCeeEEeEEECCCCCCHHHHHHHH
Confidence 9999999875 334455666555545433445566777888877888999999999988888887655555666676666
Q ss_pred HHhhhcccCCCeEEeEEeeecCCCCCCcccCCCEEEEccCCcCcccCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCChh
Q 012488 290 RNRAKDKILGGKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIIEGSENGTRMIDEG 369 (462)
Q Consensus 290 ~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~v~liGDAAh~~~P~~G~G~~~a~~da~~la~~l~~a~~~~~~~~~~~ 369 (462)
.+.+. +...+.......+++..+.+++..+|++++|||||+++|++|+|+++||.+|..+++.|.+++..+ +..
T Consensus 235 ~~~~~--~~~~~~~~~~~~~ip~~~~~~~~~~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~~l~~~----~~~ 308 (388)
T TIGR02023 235 RRRAG--LDGGQTIRREAAPIPMKPRPRWDFGRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAEYLQNG----DAT 308 (388)
T ss_pred HHhhC--CCCceEeeeeeEeccccccccccCCCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHHHHhcC----CHH
Confidence 55432 334555566667788877778888999999999999999999999999999999999999988654 367
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHhHhhhccCchhHHHHHHHhccccccccChhhHhhhhhcCCCChhHHHHHHHHhhhhhc
Q 012488 370 DLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKRVVPGNPLEDLKLAVNTIGSLVR 449 (462)
Q Consensus 370 ~L~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 449 (462)
.|..|++.|++.+.+.+.....+..+++.++...+.++..+++..++++.+.+++.+++++.+|+..+|+++|++++|.+
T Consensus 309 ~L~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (388)
T TIGR02023 309 DLRHYERKFMKLYGTTFRVLRVLQMVYYRSDRRREVFVEMCRDKDVQRLTFDSYMYKQMAPAPWLAQLKIAAKNIGSLVR 388 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHhccccHHHhhHHHhhhhccccCChHHHHHHHHHHHHHhhC
Confidence 89999999999999999988889999988898999999999999999999999999999999999999999999999864
No 4
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=100.00 E-value=4.4e-37 Score=304.39 Aligned_cols=337 Identities=33% Similarity=0.489 Sum_probs=244.1
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC-CCCCC-cccccCccccccCCCChhh-HhcccceEEEEcCCCceE
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL-DNCKP-CGGAIPLCMVGEFDLPLDI-IDRKVTKMKMISPSNVAV 125 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~-~~~~~-~g~~i~~~~l~~~g~~~~~-~~~~~~~~~~~~~~~~~~ 125 (462)
++|||+||||||||++||+.|++.|++|+|+||++ +..+. |++.++...++++.....- +...+.+..++.+ +...
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~-~~~~ 80 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFP-GEKV 80 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEec-CCce
Confidence 57999999999999999999999999999999988 44444 4478888888887654321 5566666667666 3333
Q ss_pred eccCcccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEE
Q 012488 126 DIGQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVI 204 (462)
Q Consensus 126 ~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI 204 (462)
.+.... ...+++.|..|+++|.+++++.|++++.++ +..+.. +++.+++.+..++ .++++++||
T Consensus 81 ~~~~~~---~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~---~~~~~~~~~~~~~---------~e~~a~~vI 145 (396)
T COG0644 81 AIEVPV---GEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIR---EDDGVVVGVRAGD---------DEVRAKVVI 145 (396)
T ss_pred EEecCC---CceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEE---eCCcEEEEEEcCC---------EEEEcCEEE
Confidence 332111 335589999999999999999999999998 888873 3434555554432 799999999
Q ss_pred ecCCCChHhhhhhcCC---CCceEEEEEEEEecCCcccccccCeeEEEecCCCCCCeEEEEEeCCCc-eEEEEEeccCCC
Q 012488 205 GADGANSRVAKSINAG---DYDYAIAFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDH-VAVGTGTVTHKG 280 (462)
Q Consensus 205 ~AdG~~S~vr~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p~~~~-~~v~~~~~~~~~ 280 (462)
+|||.+|.++++++.. ...+.+...+.+..+.. ......++......+.+|.|+||.++. .++|++......
T Consensus 146 ~AdG~~s~l~~~lg~~~~~~~~~~~~~~e~~~~~~~----~~~~~~~~~~~~~~~~Gy~wifP~~~~~~~VG~g~~~~~~ 221 (396)
T COG0644 146 DADGVNSALARKLGLKDRKPEDYAIGVKEVIEVPDD----GDVEEFLYGPLDVGPGGYGWIFPLGDGHANVGIGVLLDDP 221 (396)
T ss_pred ECCCcchHHHHHhCCCCCChhheeEEeEEEEecCCC----CceEEEEecCCccCCCceEEEEECCCceEEEEEEEecCCc
Confidence 9999999999999887 33455666666665511 111222344456788999999999986 789888654432
Q ss_pred cHH---HHHHHHHHh--hhcccCCCeEEeEEeeecCCCCCC-c-ccCCCEEEEccCCcCcccCCcccHHHHHHHHHHHHH
Q 012488 281 DIK---KFQLATRNR--AKDKILGGKIIRVEAHPIPEHPRP-R-RLSGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAE 353 (462)
Q Consensus 281 ~~~---~~~~~~~~~--~~~~l~~~~~~~~~~~~i~~~~~~-~-~~~~~v~liGDAAh~~~P~~G~G~~~a~~da~~la~ 353 (462)
..+ ++.+.+.+. ..+.+.++++.+...+.+|..... . ++.+|+++|||||++++|++|+||.+||.+|.++|+
T Consensus 222 ~~~~~~~~l~~f~~~~~~~~~~~~~~~~~~~~~~ip~~g~~~~~~~~~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~ 301 (396)
T COG0644 222 SLSPFLELLERFKEHPAIRKLLLGGKILEYAAGGIPEGGPASRPLVGDGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAE 301 (396)
T ss_pred CCCchHHHHHHHHhCcccchhccCCceEEEeeeecccCCcCCCccccCCEEEEeccccCCCCcccCcHHHHHHHHHHHHH
Confidence 222 333333332 223333367888888888886433 3 678899999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCCChhHHHHHHHHHHHhhhhHHHHHHHhHhhhcc-CchhHHHHHHHh
Q 012488 354 AIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYR-SNPAREAFVEMC 410 (462)
Q Consensus 354 ~l~~a~~~~~~~~~~~~L~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 410 (462)
.|.++...+ .+.|..|.+.|++.+...........+.+.. .......+.+.+
T Consensus 302 ~i~~~~~~~-----~~~l~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (396)
T COG0644 302 AIAEALEGG-----EEALAEYERLLRKSLAREDLKSLRLLKLLLRLLDRTLPALIKLL 354 (396)
T ss_pred HHHHHHHcC-----hhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHhhhhHHHHHHHH
Confidence 999987664 5788899999998888776665555555553 333344444444
No 5
>PRK08013 oxidoreductase; Provisional
Probab=100.00 E-value=3.5e-36 Score=299.08 Aligned_cols=331 Identities=17% Similarity=0.206 Sum_probs=216.4
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCccc-------ccC---ccccccCCCChhhHhc---ccceEE
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGG-------AIP---LCMVGEFDLPLDIIDR---KVTKMK 116 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~-------~i~---~~~l~~~g~~~~~~~~---~~~~~~ 116 (462)
++||+||||||+|+++|+.|+++|++|+|+|+.+......|. +++ .+.|+++|+++.+... ....+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~ 82 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGME 82 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEE
Confidence 479999999999999999999999999999999843222222 233 3578999999887653 455666
Q ss_pred EEcCCC-ceEeccCc-ccCCCeEEeeehHHHHHHHHHHHHHC-CCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCC
Q 012488 117 MISPSN-VAVDIGQT-LKPHEYIGMVRREVLDAYLRERAEKN-GASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGV 192 (462)
Q Consensus 117 ~~~~~~-~~~~~~~~-~~~~~~~~~v~r~~l~~~L~~~~~~~-gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~ 192 (462)
+++... ..+.+... .......+.+.|..|++.|.+.+.+. |+++++++ |.+++. +++.+.+++.+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~---~~~~v~v~~~~g------- 152 (400)
T PRK08013 83 VWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAW---GENEAFLTLKDG------- 152 (400)
T ss_pred EEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEe---cCCeEEEEEcCC-------
Confidence 665532 22332211 11112235799999999999999886 79999988 888872 334578888776
Q ss_pred CceeEEEecEEEecCCCChHhhhhhcCCCC--ceE-EEEEEEEecCCcccccccCeeEEEecCCCCCCeEEEEEeCCCc-
Q 012488 193 GEKRTLEVDAVIGADGANSRVAKSINAGDY--DYA-IAFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDH- 268 (462)
Q Consensus 193 ~~~~~~~adlvI~AdG~~S~vr~~l~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p~~~~- 268 (462)
.+++||+||+|||.+|.+|++++.... .|. ..+...+..... .......++. +.++++++|..+.
T Consensus 153 ---~~i~a~lvVgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~~~~~~~----~~g~~~~~p~~~~~ 221 (400)
T PRK08013 153 ---SMLTARLVVGADGANSWLRNKADIPLTFWDYQHHALVATIRTEEP----HDAVARQVFH----GDGILAFLPLSDPH 221 (400)
T ss_pred ---CEEEeeEEEEeCCCCcHHHHHcCCCccccccCcEEEEEEEeccCC----CCCEEEEEEc----CCCCEEEEECCCCC
Confidence 689999999999999999999987521 111 111112221111 1111111221 2336667776542
Q ss_pred -eEEEEEeccC------CCcHHHHHHHHHHhhhcccCCCeEE-eEEeeecCCCCCCcccCCCEEEEccCCcCcccCCccc
Q 012488 269 -VAVGTGTVTH------KGDIKKFQLATRNRAKDKILGGKII-RVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEG 340 (462)
Q Consensus 269 -~~v~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~i~~~~~~~~~~~~v~liGDAAh~~~P~~G~G 340 (462)
..+....... ....+.|.+.+...+...+....+. ....+++.....++|..+|++|+|||||.++|+.|||
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~GQG 301 (400)
T PRK08013 222 LCSIVWSLSPEEAQRMQQAPEEEFNRALAIAFDNRLGLCELESERQVFPLTGRYARQFAAHRLALVGDAAHTIHPLAGQG 301 (400)
T ss_pred eEEEEEEcCHHHHHHHHcCCHHHHHHHHHHHHhHhhCceEecCCccEEecceeecccccCCcEEEEechhhcCCccccCc
Confidence 2222221110 1122234443333332223222221 1224555555678899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhhhhHHHHHHHhHhhhccCch
Q 012488 341 IYFAAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNP 401 (462)
Q Consensus 341 ~~~a~~da~~la~~l~~a~~~~~~~~~~~~L~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (462)
+|+||+||..|++.|......+.+......|+.|++.++..........+.+.+++....+
T Consensus 302 ~n~gi~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~l~~~~~~ 362 (400)
T PRK08013 302 VNLGFMDAAELIAELRRLHRQGKDIGQHLYLRRYERSRKHSAALMLAGMQGFRDLFAGNNP 362 (400)
T ss_pred hhhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 9999999999999998776544322233568899988777777777777778888876554
No 6
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=2.4e-35 Score=290.53 Aligned_cols=318 Identities=17% Similarity=0.211 Sum_probs=214.9
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCC-C----CCcccccCc---cccccCCCChhhHhc--ccceEEEEcC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDN-C----KPCGGAIPL---CMVGEFDLPLDIIDR--KVTKMKMISP 120 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~-~----~~~g~~i~~---~~l~~~g~~~~~~~~--~~~~~~~~~~ 120 (462)
+||+||||||+|+++|+.|++.|++|+|+|+.+.. . ..++.++++ +.|+++|+++.+... .+..+.+++.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 81 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDN 81 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEEC
Confidence 69999999999999999999999999999997521 1 123444543 478899998876543 3566777776
Q ss_pred CCc-eEeccCcccCCCeEEeeehHHHHHHHHHHHHHCC-CEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeE
Q 012488 121 SNV-AVDIGQTLKPHEYIGMVRREVLDAYLRERAEKNG-ASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRT 197 (462)
Q Consensus 121 ~~~-~~~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~g-v~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 197 (462)
.+. ...+.. .....+.+.+.|..|++.|.+.+.+.+ ++++.++ ++++.. +++.+.|++.+ .+
T Consensus 82 ~g~~~~~~~~-~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~---~~~~v~v~~~~-----------~~ 146 (374)
T PRK06617 82 KASEILDLRN-DADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVIS---HNDYSIIKFDD-----------KQ 146 (374)
T ss_pred CCceEEEecC-CCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEE---cCCeEEEEEcC-----------CE
Confidence 654 233322 122334568999999999999999886 8898887 888872 33457777743 38
Q ss_pred EEecEEEecCCCChHhhhhhcCCC--CceEEEEEEEEecCCcccccccCeeEEEecCCCCCCeEEEEEeCCCce-EEEEE
Q 012488 198 LEVDAVIGADGANSRVAKSINAGD--YDYAIAFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHV-AVGTG 274 (462)
Q Consensus 198 ~~adlvI~AdG~~S~vr~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p~~~~~-~v~~~ 274 (462)
++||+||+|||.+|.+|+.++.+. +.|..++...+.... ...+....++ .+.+.++++|..+.. ...+-
T Consensus 147 ~~adlvIgADG~~S~vR~~l~~~~~~~~y~~~~~~~v~~~~----~~~~~~~~~~----~~~g~~~~lPl~~~~~~~~vw 218 (374)
T PRK06617 147 IKCNLLIICDGANSKVRSHYFANEIEKPYQTALTFNIKHEK----PHENCAMEHF----LPLGPFALLPLKDQYASSVIW 218 (374)
T ss_pred EeeCEEEEeCCCCchhHHhcCCCcccccCCeEEEEEEeccC----CCCCEEEEEe----cCCCCEEEeECCCCCeEEEEE
Confidence 999999999999999999987663 333333333332211 1111111122 123357778876553 21111
Q ss_pred eccC-------CCcHHHHHHHHHHhhhcccCCCeE-EeEEeeecCCCCCCcccCCCEEEEccCCcCcccCCcccHHHHHH
Q 012488 275 TVTH-------KGDIKKFQLATRNRAKDKILGGKI-IRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYFAAK 346 (462)
Q Consensus 275 ~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~i~~~~~~~~~~~~v~liGDAAh~~~P~~G~G~~~a~~ 346 (462)
.... ..+.+.+.+.+...+...+..-.. .+...+++......+|+.+|++|+|||||.++|+.|||+|+||+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~grv~LiGDAAH~~~P~~GQG~n~gl~ 298 (374)
T PRK06617 219 STSSDQAALIVNLPVEEVRFLTQRNAGNSLGKITIDSEISSFPLKARIANRYFHNRIVLIADTAHTVHPLAGQGLNQGIK 298 (374)
T ss_pred eCCHHHHHHHHcCCHHHHHHHHHHhhchhcCceeeccceeEEEeeeeeccceecCCEEEEEcccccCCCCccccHHHHHH
Confidence 1110 011123333322222222211111 12445666666778899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhhhhHHHHHHHhHhhhccCch
Q 012488 347 SGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNP 401 (462)
Q Consensus 347 da~~la~~l~~a~~~~~~~~~~~~L~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (462)
||..|++.|. ....|.+|++.++.........++.+.++|.+..+
T Consensus 299 Da~~La~~L~----------~~~~L~~Ye~~R~~~~~~~~~~t~~l~~~f~~~~~ 343 (374)
T PRK06617 299 DIEILSMIVS----------NNGTLQEYQKLRQEDNFIMYKLTDELNNIFSNYSK 343 (374)
T ss_pred HHHHHHHHHc----------CcchHHHHHHHHhHHHHHHHHHHHHHHHHHcCCch
Confidence 9999998882 12578899999999988899999999999887665
No 7
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=5e-35 Score=293.03 Aligned_cols=340 Identities=19% Similarity=0.229 Sum_probs=214.6
Q ss_pred CCCCCCCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCC-CCccc--ccC---ccccccCCCChhhHhc--ccce
Q 012488 43 SPKLTNRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNC-KPCGG--AIP---LCMVGEFDLPLDIIDR--KVTK 114 (462)
Q Consensus 43 ~~~~~~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~-~~~g~--~i~---~~~l~~~g~~~~~~~~--~~~~ 114 (462)
.|...+.++||+||||||+|+++|+.|+++|++|+||||++... ..+|. .++ .+.|+++|+++++... ....
T Consensus 11 ~~~~~~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~ 90 (415)
T PRK07364 11 LPSTRSLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQ 90 (415)
T ss_pred CCCCCccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccE
Confidence 33334557899999999999999999999999999999998432 22343 343 3578899998887654 2344
Q ss_pred EEEEcCCCc-eEeccCc-ccCCCeEEeeehHHHHHHHHHHHHHC-CCEEEcce-eEEEEecCCCCCCEEEEEeccCCccC
Q 012488 115 MKMISPSNV-AVDIGQT-LKPHEYIGMVRREVLDAYLRERAEKN-GASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKG 190 (462)
Q Consensus 115 ~~~~~~~~~-~~~~~~~-~~~~~~~~~v~r~~l~~~L~~~~~~~-gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~ 190 (462)
+.+.+..+. ...+... .......+.+.+..|.+.|.+.+.+. |+++++++ +++++. +++.+.|++.++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~---~~~~~~v~~~~~----- 162 (415)
T PRK07364 91 IRLSDADYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEY---QQDAATVTLEIE----- 162 (415)
T ss_pred EEEEeCCCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEe---cCCeeEEEEccC-----
Confidence 455543332 2222211 11122223444557888898888776 69999887 888872 334577777653
Q ss_pred CCCceeEEEecEEEecCCCChHhhhhhcCCC--CceE-EEEEEEEecCCcccccccCee-EEEecCCCCCCeEEEEEeCC
Q 012488 191 GVGEKRTLEVDAVIGADGANSRVAKSINAGD--YDYA-IAFQERVKIPDEKMVYYENLA-EMYVGDDVSPDFYGWVFPKC 266 (462)
Q Consensus 191 ~~~~~~~~~adlvI~AdG~~S~vr~~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~w~~p~~ 266 (462)
++..+++||+||+|||.+|.+|+.++... +.+. ..+...+..+.. ..... ..+. +.+++|++|..
T Consensus 163 --~~~~~i~adlvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-----~~g~~~~~p~~ 231 (415)
T PRK07364 163 --GKQQTLQSKLVVAADGARSPIRQAAGIKTKGWKYWQSCVTATVKHEAP----HNDIAYERFW-----PSGPFAILPLP 231 (415)
T ss_pred --CcceEEeeeEEEEeCCCCchhHHHhCCCceeecCCCEEEEEEEEccCC----CCCEEEEEec-----CCCCeEEeECC
Confidence 23357999999999999999999997652 2111 112222221111 01111 1121 23457788876
Q ss_pred Cce-EEEEEeccC------CCcHHHHHHHHHHhhhcccCCCeEE-eEEeeecCCCCCCcccCCCEEEEccCCcCcccCCc
Q 012488 267 DHV-AVGTGTVTH------KGDIKKFQLATRNRAKDKILGGKII-RVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSG 338 (462)
Q Consensus 267 ~~~-~v~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~i~~~~~~~~~~~~v~liGDAAh~~~P~~G 338 (462)
+.. .+....... ....+++.+.+.+.+...+..-... ....+++.....++|..+|++|+|||||.++|+.|
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~G 311 (415)
T PRK07364 232 GNRCQIVWTAPHAQAKALLALPEAEFLAELQQRYGDQLGKLELLGDRFLFPVQLMQSDRYVQHRLALVGDAAHCCHPVGG 311 (415)
T ss_pred CCCEEEEEECCHHHHHHHHCCCHHHHHHHHHHHhhhhhcCceecCCCceecchhhhhhhhcCCcEEEEecccccCCCccc
Confidence 543 232211100 1122344444444333332211111 22244555455678889999999999999999999
Q ss_pred ccHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhhhhHHHHHHHhHhhhccCch
Q 012488 339 EGIYFAAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNP 401 (462)
Q Consensus 339 ~G~~~a~~da~~la~~l~~a~~~~~~~~~~~~L~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (462)
||+|+||+||..|++.|......+.+..+...|++|++.++............+.+++.....
T Consensus 312 qG~n~al~DA~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~ 374 (415)
T PRK07364 312 QGLNLGIRDAAALAQVLQTAHQRGEDIGSLAVLKRYERWRKRENWLILGFTDLLDRLFSNQWW 374 (415)
T ss_pred ccHhHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 999999999999999998876544322345788899887777766677777777777766543
No 8
>PRK10015 oxidoreductase; Provisional
Probab=100.00 E-value=1.7e-34 Score=287.73 Aligned_cols=339 Identities=23% Similarity=0.362 Sum_probs=232.9
Q ss_pred CCCCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC-CCCC-CcccccCccccccC--CCC-hhhHhcccc--eEEEE
Q 012488 46 LTNRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL-DNCK-PCGGAIPLCMVGEF--DLP-LDIIDRKVT--KMKMI 118 (462)
Q Consensus 46 ~~~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~-~~~~-~~g~~i~~~~l~~~--g~~-~~~~~~~~~--~~~~~ 118 (462)
|+..++||+||||||||+++|+.|+++|++|+|+||.+ +..+ .||+.+....++.+ ++. +..++..+. .+.+.
T Consensus 1 m~~~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~ 80 (429)
T PRK10015 1 MSDDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFL 80 (429)
T ss_pred CCccccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEE
Confidence 44557999999999999999999999999999999987 3333 46766655555443 111 111122222 23333
Q ss_pred cCCCc-eEeccCcc--cCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCc
Q 012488 119 SPSNV-AVDIGQTL--KPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGE 194 (462)
Q Consensus 119 ~~~~~-~~~~~~~~--~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 194 (462)
..++. .+++.... .+....+.+.|..|+++|.+++++.|++++.++ |.++.. +++.+.....++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~---~~~~v~~v~~~~--------- 148 (429)
T PRK10015 81 TEESAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVR---EGNKVTGVQAGD--------- 148 (429)
T ss_pred eCCCceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEE---eCCEEEEEEeCC---------
Confidence 32221 22322111 011123478999999999999999999999886 888762 223343222232
Q ss_pred eeEEEecEEEecCCCChHhhhhhcCC----CCceEEEEEEEEecCCccccc------ccCeeEEEecCCCC-CCeEEEEE
Q 012488 195 KRTLEVDAVIGADGANSRVAKSINAG----DYDYAIAFQERVKIPDEKMVY------YENLAEMYVGDDVS-PDFYGWVF 263 (462)
Q Consensus 195 ~~~~~adlvI~AdG~~S~vr~~l~~~----~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~-~~~~~w~~ 263 (462)
.+++|++||+|||.+|.+++.++.. ...+..++...+..+...+.. ..+...++++.... --+++|++
T Consensus 149 -~~i~A~~VI~AdG~~s~v~~~lg~~~~~~~~~~~~gvk~~~~~~~~~i~~~~~~~~~~g~~w~~~g~~~~g~~g~G~~~ 227 (429)
T PRK10015 149 -DILEANVVILADGVNSMLGRSLGMVPASDPHHYAVGVKEVIGLTPEQINDRFNITGEEGAAWLFAGSPSDGLMGGGFLY 227 (429)
T ss_pred -eEEECCEEEEccCcchhhhcccCCCcCCCcCeEEEEEEEEEeCCHHHhhHhhcCCCCCCeEEEecCccCCCCCCceEEE
Confidence 5899999999999999999988764 233455565555554332211 11233333332211 11368999
Q ss_pred eCCCceEEEEEecc-----CCCcHHHHHHHHHHh--hhcccCCCeEEeEEeeecCCC---CCCcccCCCEEEEccCCcCc
Q 012488 264 PKCDHVAVGTGTVT-----HKGDIKKFQLATRNR--AKDKILGGKIIRVEAHPIPEH---PRPRRLSGRVALVGDAAGYV 333 (462)
Q Consensus 264 p~~~~~~v~~~~~~-----~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~i~~~---~~~~~~~~~v~liGDAAh~~ 333 (462)
|..+..++|+++.. ....+.++.+.+... +.+.+.+++..+...+.+|.. ..++.+.+|++++||||+++
T Consensus 228 ~~~d~v~vGv~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~e~~~~~ip~gg~~~~~~~~~~g~llvGDAAg~v 307 (429)
T PRK10015 228 TNKDSISLGLVCGLGDIAHAQKSVPQMLEDFKQHPAIRPLISGGKLLEYSAHMVPEGGLAMVPQLVNDGVMIVGDAAGFC 307 (429)
T ss_pred EcCCcEEEEEEEehhhhccCCCCHHHHHHHHhhChHHHHHhcCCEEEEEeeEEcccCCcccCCccccCCeEEEecccccc
Confidence 99999998885421 234556666666542 456677788888888888875 45677899999999999999
Q ss_pred cc--CCcccHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhh-hhHHHHHHHhHhhhccC
Q 012488 334 TK--CSGEGIYFAAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTY-WPTYKVLDVLQKVFYRS 399 (462)
Q Consensus 334 ~P--~~G~G~~~a~~da~~la~~l~~a~~~~~~~~~~~~L~~y~~~~~~~~-~~~~~~~~~~~~~~~~~ 399 (462)
+| ++|+||++||.+|.++|+++.++++.++ .+...|..|.+.|++.+ .+.++..+.+..+++++
T Consensus 308 ~p~~~~g~Gi~~A~~SG~~AAe~i~~a~~~~d--~s~~~l~~Y~~~~~~~~~~~~l~~~~~~~~~~~~~ 374 (429)
T PRK10015 308 LNLGFTVRGMDLAIASAQAAATTVIAAKERAD--FSASSLAQYKRELEQSCVMRDMQHFRKIPALMENP 374 (429)
T ss_pred cccCccccchhHHHHHHHHHHHHHHHHHhcCC--CccccHHHHHHHHHHCHHHHHHHHHhChHhhhcCc
Confidence 95 6999999999999999999999998776 67889999999999884 45578888888888775
No 9
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=100.00 E-value=4.5e-35 Score=289.55 Aligned_cols=332 Identities=23% Similarity=0.207 Sum_probs=219.9
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC-CC-CCCcccccC---ccccccCCCChhhHhccc--ceEEEEcCCC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL-DN-CKPCGGAIP---LCMVGEFDLPLDIIDRKV--TKMKMISPSN 122 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~-~~-~~~~g~~i~---~~~l~~~g~~~~~~~~~~--~~~~~~~~~~ 122 (462)
.+||+||||||+||++|+.|+++|++|+|||+.+ .. ....+..++ .+.|+++|+.+.+..... .........+
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~ 81 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG 81 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence 5799999999999999999999999999999983 22 122344443 457899998666655433 2223333333
Q ss_pred c-eEecc-CcccCCCeEEeeehHHHHHHHHHHHHHCC-CEEEcce-eEEEEecCCCCCCEEEEEe-ccCCccCCCCceeE
Q 012488 123 V-AVDIG-QTLKPHEYIGMVRREVLDAYLRERAEKNG-ASVINGL-FMKMDLPRNFEQPYVLYYT-EYDGTKGGVGEKRT 197 (462)
Q Consensus 123 ~-~~~~~-~~~~~~~~~~~v~r~~l~~~L~~~~~~~g-v~i~~~~-v~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~ 197 (462)
. .+.+. .......+..++.+..|.+.|.+.+.+.+ ++++.++ |+.++. +++.+.+++. +| .+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~---~~~~v~v~l~~dG----------~~ 148 (387)
T COG0654 82 RRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQ---DGDGVTVTLSFDG----------ET 148 (387)
T ss_pred ceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEE---cCCceEEEEcCCC----------cE
Confidence 2 23332 22222555678999999999999999887 9999988 998883 3345678877 66 69
Q ss_pred EEecEEEecCCCChHhhhhhcCC---CCceEEEE-EEEEecCCcccccccCeeEEEecCCCCCCeEEEEEeCCC-ceEEE
Q 012488 198 LEVDAVIGADGANSRVAKSINAG---DYDYAIAF-QERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCD-HVAVG 272 (462)
Q Consensus 198 ~~adlvI~AdG~~S~vr~~l~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p~~~-~~~v~ 272 (462)
++||+||+|||.+|.+|+.++.. ...|...+ ...+... ...++....++.+. +.+-++|..+ ...+.
T Consensus 149 ~~a~llVgADG~~S~vR~~~~~~~~~~~~y~~~~l~~~~~~~----~~~~~~~~~~~~~~----~~~~~~p~~~~~~~~~ 220 (387)
T COG0654 149 LDADLLVGADGANSAVRRAAGIAEFSGRDYGQTALVANVEPE----EPHEGRAGERFTHA----GPFALLPLPDNRSSVV 220 (387)
T ss_pred EecCEEEECCCCchHHHHhcCCCCccCCCCCceEEEEEeecC----CCCCCeEEEEecCC----CceEEEecCCCceeEE
Confidence 99999999999999999999933 21232221 1122221 11222233333322 2344455552 22221
Q ss_pred EEec------cCCCcHHHHHHHHHHhhhcc--cCCC-eEEeEEeeecCCCCCCcccCCCEEEEccCCcCcccCCcccHHH
Q 012488 273 TGTV------THKGDIKKFQLATRNRAKDK--ILGG-KIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYF 343 (462)
Q Consensus 273 ~~~~------~~~~~~~~~~~~~~~~~~~~--l~~~-~~~~~~~~~i~~~~~~~~~~~~v~liGDAAh~~~P~~G~G~~~ 343 (462)
.... ......+.+.+.+...+... +... ...+...+++......+|..+|++|+|||||.++|+.|||+|+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~pl~~~~a~~~~~~Rv~LiGDAAH~~~P~~gQG~nl 300 (387)
T COG0654 221 WSLPPGPAEDLQGLSDEEFLRELQRRLGERDPLGRVTLVSSRSAFPLSLRVAERYRRGRVVLIGDAAHAMHPLAGQGANL 300 (387)
T ss_pred EECChhhHHHHhcCCHHHHHHHHHHhcCcccccceEEEccccccccccchhhhheecCcEEEEeeccccCCCccccchhh
Confidence 1111 11122234444444444433 2111 1122335566666777888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhhhhHHHHHHHhHhhhccCchhHHH
Q 012488 344 AAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNPAREA 405 (462)
Q Consensus 344 a~~da~~la~~l~~a~~~~~~~~~~~~L~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (462)
||+|+..|++.|.++...+. +...|..|++.++..........+.+.+.+....+....
T Consensus 301 gl~Da~~La~~L~~~~~~~~---~~~~L~~Y~~~R~~~~~~~~~~s~~~~~~~~~~~~~~~~ 359 (387)
T COG0654 301 ALEDAAALAEALAAAPRPGA---DAAALAAYEARRRPRAEAIQKLSRALGRLFSADGPFARF 359 (387)
T ss_pred hhhhHHHHHHHHHHHhhcCc---cHHHHHHHHHhhhhHHHHHHHHHHHHhhhhccCCcHHHH
Confidence 99999999999999876543 268888999888888888888888888888776654443
No 10
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=100.00 E-value=1.2e-34 Score=287.81 Aligned_cols=334 Identities=16% Similarity=0.155 Sum_probs=217.4
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCC-CCccc-----ccC---ccccccCCCChhhHhc---ccceE
Q 012488 48 NRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNC-KPCGG-----AIP---LCMVGEFDLPLDIIDR---KVTKM 115 (462)
Q Consensus 48 ~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~-~~~g~-----~i~---~~~l~~~g~~~~~~~~---~~~~~ 115 (462)
-+++||+||||||+|+++|+.|+++|++|+|+||.+... ..++. .++ .+.|+++|+++.+... .+..+
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~ 83 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRM 83 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEE
Confidence 456899999999999999999999999999999987321 12221 233 3467899998877543 34455
Q ss_pred EEEcCCC-ceEeccC-cccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCC
Q 012488 116 KMISPSN-VAVDIGQ-TLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGV 192 (462)
Q Consensus 116 ~~~~~~~-~~~~~~~-~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~ 192 (462)
.+++..+ ....+.. ........+.++|..|.+.|.+.+++.|++++.++ |++++. +++.+.+++.+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~---~~~~v~v~~~~g------- 153 (392)
T PRK08773 84 RVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQ---DADRVRLRLDDG------- 153 (392)
T ss_pred EEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEe---cCCeEEEEECCC-------
Confidence 5555432 2233321 11223344578999999999999999999999887 888872 344577777665
Q ss_pred CceeEEEecEEEecCCCChHhhhhhcCCCCc--eE-EEEEEEEecCCcccccccCeeEEEecCCCCCCeEEEEEeCCCce
Q 012488 193 GEKRTLEVDAVIGADGANSRVAKSINAGDYD--YA-IAFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHV 269 (462)
Q Consensus 193 ~~~~~~~adlvI~AdG~~S~vr~~l~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p~~~~~ 269 (462)
.++++|+||+|||.+|.+|+.++..... |. .+....+..... ........+ .+.+...++|..+..
T Consensus 154 ---~~~~a~~vV~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~~----~~~~~~~~~----~~~g~~~~lP~~~~~ 222 (392)
T PRK08773 154 ---RRLEAALAIAADGAASTLRELAGLPVSRHDYAQRGVVAFVDTEHP----HQATAWQRF----LPTGPLALLPFADGR 222 (392)
T ss_pred ---CEEEeCEEEEecCCCchHHHhhcCCceEEEeccEEEEEEEEccCC----CCCEEEEEe----CCCCcEEEEECCCCc
Confidence 6899999999999999999998765321 11 111111111110 011111111 122344555654332
Q ss_pred -EEEEEeccC------CCcHHHHHHHHHHhhhcccCCCeEE-eEEeeecCCCCCCcccCCCEEEEccCCcCcccCCcccH
Q 012488 270 -AVGTGTVTH------KGDIKKFQLATRNRAKDKILGGKII-RVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGI 341 (462)
Q Consensus 270 -~v~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~i~~~~~~~~~~~~v~liGDAAh~~~P~~G~G~ 341 (462)
.+....... ....+.+.+.+.+.+.+.+..-+.. ....+++......+|..+|++|+|||||.++|+.|||+
T Consensus 223 ~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~ 302 (392)
T PRK08773 223 SSIVWTLPDAEAERVLALDEAAFSRELTQAFAARLGEVRVASPRTAFPLRRQLVQQYVSGRVLTLGDAAHVVHPLAGQGV 302 (392)
T ss_pred eEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhhcCeEecCCccEeechhhhhhhhcCCcEEEEechhhcCCCchhchh
Confidence 222211100 0112233344444333333211111 12245565556778999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhhhhHHHHHHHhHhhhccCchh
Q 012488 342 YFAAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNPA 402 (462)
Q Consensus 342 ~~a~~da~~la~~l~~a~~~~~~~~~~~~L~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (462)
|+||+||..|++.|.++...+.+..+...|.+|++.++.........++.+.++|.+..+.
T Consensus 303 n~al~Da~~La~~L~~~~~~~~~~~~~~~l~~y~~~R~~~~~~~~~~~~~l~~~f~~~~~~ 363 (392)
T PRK08773 303 NLGLRDVAALQQLVRQAHARRADWAAPHRLQRWARTRRSDNTVAAYGFDAINRVFSNDEMH 363 (392)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH
Confidence 9999999999999998876554445678899999988888776777777888888876653
No 11
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=5.5e-35 Score=291.51 Aligned_cols=332 Identities=18% Similarity=0.199 Sum_probs=219.4
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCC---------CCCcccccC---ccccccCCCChhhHhc---ccc
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDN---------CKPCGGAIP---LCMVGEFDLPLDIIDR---KVT 113 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~---------~~~~g~~i~---~~~l~~~g~~~~~~~~---~~~ 113 (462)
|++||+||||||+|+++|+.|+++|++|+|+|+.+.. ...++..++ .+.|+++|+++.+... .+.
T Consensus 1 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~ 80 (405)
T PRK05714 1 MRADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYS 80 (405)
T ss_pred CCccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCccce
Confidence 4579999999999999999999999999999998621 123444554 3578899998887542 345
Q ss_pred eEEEEcCCCc-eEeccCc-ccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccC
Q 012488 114 KMKMISPSNV-AVDIGQT-LKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKG 190 (462)
Q Consensus 114 ~~~~~~~~~~-~~~~~~~-~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~ 190 (462)
.+.+++..+. .+.+... .....+.+.+.+..+.+.|.+.+++.|++++.++ +.+++. .++.+.|++.+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~---~~~~v~v~~~~g----- 152 (405)
T PRK05714 81 EMQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRR---SGDDWLLTLADG----- 152 (405)
T ss_pred eEEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEE---cCCeEEEEECCC-----
Confidence 6667666553 2333211 1112224578889999999999998899999887 888872 344577887776
Q ss_pred CCCceeEEEecEEEecCCCChHhhhhhcCCCC--ceEEE-EEEEEecCCcccccccCeeEEEecCCCCCCeEEEEEeCCC
Q 012488 191 GVGEKRTLEVDAVIGADGANSRVAKSINAGDY--DYAIA-FQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCD 267 (462)
Q Consensus 191 ~~~~~~~~~adlvI~AdG~~S~vr~~l~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p~~~ 267 (462)
.+++||+||+|||.+|.+|+.++.... .|... ....+..+. ........++. +.+.++.+|..+
T Consensus 153 -----~~~~a~~vVgAdG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~----~~g~~~~~P~~~ 219 (405)
T PRK05714 153 -----RQLRAPLVVAADGANSAVRRLAGCATREWDYLHHAIVTSVRCSE----PHRATAWQRFT----DDGPLAFLPLER 219 (405)
T ss_pred -----CEEEeCEEEEecCCCchhHHhcCCCcccccCCceEEEEEEEcCC----CCCCEEEEEcC----CCCCeEEeeCCC
Confidence 689999999999999999999977521 21111 001111111 11111111122 234566677642
Q ss_pred ---ceEEEEEeccCC--------CcHHHHHHHHHHhhhcccCCC-eEEeEEeeecCCCCCCcccCCCEEEEccCCcCccc
Q 012488 268 ---HVAVGTGTVTHK--------GDIKKFQLATRNRAKDKILGG-KIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTK 335 (462)
Q Consensus 268 ---~~~v~~~~~~~~--------~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~i~~~~~~~~~~~~v~liGDAAh~~~P 335 (462)
.....+...... ...+.+.+.+.+.+...+..- .......+++.....++|..+|++|+|||||.++|
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~rv~LlGDAAH~~~P 299 (405)
T PRK05714 220 DGDEHWCSIVWSTTPEEAERLMALDDDAFCAALERAFEGRLGEVLSADPRLCVPLRQRHAKRYVEPGLALIGDAAHTIHP 299 (405)
T ss_pred CCCCCeEEEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHHhCCceecCCccEEecceeehhhhccCCEEEEEeccccCCC
Confidence 111211111111 112233333333332222111 11122345555566788999999999999999999
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhhhhHHHHHHHhHhhhccCch
Q 012488 336 CSGEGIYFAAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNP 401 (462)
Q Consensus 336 ~~G~G~~~a~~da~~la~~l~~a~~~~~~~~~~~~L~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (462)
+.|||+|+||+||..|++.|..+...+++......|..|++.++..........+.+.+++.+...
T Consensus 300 ~~GQG~n~al~DA~~La~~L~~~~~~g~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~~ 365 (405)
T PRK05714 300 LAGQGVNLGFLDAAVLAEVLLHAAERGERLADVRVLSRFERRRMPHNLALMAAMEGFERLFQADPL 365 (405)
T ss_pred cccccccHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCch
Confidence 999999999999999999998776544322346789999999999988899999999998887654
No 12
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=100.00 E-value=8.1e-35 Score=289.12 Aligned_cols=335 Identities=19% Similarity=0.214 Sum_probs=216.3
Q ss_pred CCCCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcc-------cccC---ccccccCCCChhhHhc---cc
Q 012488 46 LTNRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCG-------GAIP---LCMVGEFDLPLDIIDR---KV 112 (462)
Q Consensus 46 ~~~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g-------~~i~---~~~l~~~g~~~~~~~~---~~ 112 (462)
|...++||+||||||+|+++|+.|+++|++|+|+|+.+......+ ..++ .+.|+.+|+++.+... .+
T Consensus 1 ~~~~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~ 80 (391)
T PRK08020 1 MTNQPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPY 80 (391)
T ss_pred CCcccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCccc
Confidence 456779999999999999999999999999999999863211111 1233 3467889998877542 23
Q ss_pred ceEEEEcCCCceEeccC-cccCCCeEEeeehHHHHHHHHHHHHHC-CCEEEcce-eEEEEecCCCCCCEEEEEeccCCcc
Q 012488 113 TKMKMISPSNVAVDIGQ-TLKPHEYIGMVRREVLDAYLRERAEKN-GASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTK 189 (462)
Q Consensus 113 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~r~~l~~~L~~~~~~~-gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~ 189 (462)
..+..+......+.+.. ........+.++|..|++.|.+.+++. |++++.++ ++++.. +++.+.|++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~---~~~~~~v~~~~g---- 153 (391)
T PRK08020 81 RRLETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQR---DDDGWELTLADG---- 153 (391)
T ss_pred ceEEEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEE---cCCeEEEEECCC----
Confidence 33443332222222211 111122345789999999999998887 89999887 888862 334577777665
Q ss_pred CCCCceeEEEecEEEecCCCChHhhhhhcCCC--CceE-EEEEEEEecCCcccccccCeeEEEecCCCCCCeEEEEEeCC
Q 012488 190 GGVGEKRTLEVDAVIGADGANSRVAKSINAGD--YDYA-IAFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKC 266 (462)
Q Consensus 190 ~~~~~~~~~~adlvI~AdG~~S~vr~~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p~~ 266 (462)
.+++||+||+|||.+|.+|+.++.+. +.|. ..+...+..+.. ..+....++. +.+...++|..
T Consensus 154 ------~~~~a~~vI~AdG~~S~vR~~~~~~~~~~~y~~~~~~~~~~~~~~----~~~~~~~~~~----~~g~~~~~p~~ 219 (391)
T PRK08020 154 ------EEIQAKLVIGADGANSQVRQMAGIGVHGWQYRQSCMLISVKCENP----PGDSTWQQFT----PSGPRAFLPLF 219 (391)
T ss_pred ------CEEEeCEEEEeCCCCchhHHHcCCCccccCCCceEEEEEEEecCC----CCCEEEEEEc----CCCCEEEeECC
Confidence 68999999999999999999997652 2221 111122222111 0111111111 11223445654
Q ss_pred Cc-eEEEEEecc------CCCcHHHHHHHHHHhhhcccCCCeEEeEEeeecCCCCCCcccCCCEEEEccCCcCcccCCcc
Q 012488 267 DH-VAVGTGTVT------HKGDIKKFQLATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGE 339 (462)
Q Consensus 267 ~~-~~v~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~v~liGDAAh~~~P~~G~ 339 (462)
+. ..+...... .....+++.+.+.+.+.+.+..-.......+++.....++|..+|++|+|||||.++|+.||
T Consensus 220 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~rv~LvGDAAH~~~P~~Gq 299 (391)
T PRK08020 220 DNWASLVWYDSPARIRQLQAMSMAQLQQEIAAHFPARLGAVTPVAAGAFPLTRRHALQYVQPGLALVGDAAHTINPLAGQ 299 (391)
T ss_pred CCcEEEEEECCHHHHHHHHCCCHHHHHHHHHHHhhhhccceEeccccEeecceeehhhhccCcEEEEechhhccCCcccc
Confidence 33 222221110 01123444444444444333222222334556655667788999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhhhhHHHHHHHhHhhhccCch
Q 012488 340 GIYFAAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNP 401 (462)
Q Consensus 340 G~~~a~~da~~la~~l~~a~~~~~~~~~~~~L~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (462)
|+|+||+||..|++.|.+....+.+......|..|++.++.........++.+.++|.+..+
T Consensus 300 G~n~al~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~ 361 (391)
T PRK08020 300 GVNLGYRDVDALLDVLVNARSYGEAWASEAVLKRYQRRRMADNLLMQSGMDLFYAGFSNNLP 361 (391)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 99999999999999998876555443456889899988888777777788888888887654
No 13
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=100.00 E-value=2.7e-34 Score=286.27 Aligned_cols=332 Identities=20% Similarity=0.237 Sum_probs=219.0
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC-CCC-----CCcccccC---ccccccCCCChhhHhc---ccceEEE
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL-DNC-----KPCGGAIP---LCMVGEFDLPLDIIDR---KVTKMKM 117 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~-~~~-----~~~g~~i~---~~~l~~~g~~~~~~~~---~~~~~~~ 117 (462)
.+||+||||||+|+++|+.|+++|++|+|+|+.. ... ...+.+++ .+.|+++|+++.+... .+..+.+
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~ 83 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV 83 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence 4799999999999999999999999999999973 111 12344554 3578999999888643 4556667
Q ss_pred EcCCCc-eEeccCc-ccCCCeEEeeehHHHHHHHHHHHHHC-CCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCC
Q 012488 118 ISPSNV-AVDIGQT-LKPHEYIGMVRREVLDAYLRERAEKN-GASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVG 193 (462)
Q Consensus 118 ~~~~~~-~~~~~~~-~~~~~~~~~v~r~~l~~~L~~~~~~~-gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 193 (462)
++.... .+.+... .....+.+.+.+..+.+.|.+.+.+. |++++.+. |++++. +++.+.|++.+|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~---~~~~~~v~~~~g-------- 152 (405)
T PRK08850 84 WEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAV---GESEAWLTLDNG-------- 152 (405)
T ss_pred EeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEe---eCCeEEEEECCC--------
Confidence 655421 2222211 11122345788899999999998775 69999887 888872 334577888776
Q ss_pred ceeEEEecEEEecCCCChHhhhhhcCCCC--ce-EEEEEEEEecCCcccccccCeeEEEecCCCCCCeEEEEEeCCCc--
Q 012488 194 EKRTLEVDAVIGADGANSRVAKSINAGDY--DY-AIAFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDH-- 268 (462)
Q Consensus 194 ~~~~~~adlvI~AdG~~S~vr~~l~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p~~~~-- 268 (462)
.+++||+||+|||.+|.+|++++.... .| ...+...+..+. ........+++ +.+.+.++|..+.
T Consensus 153 --~~~~a~lvIgADG~~S~vR~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~~~~~~~----~~g~~~~lp~~~~~~ 222 (405)
T PRK08850 153 --QALTAKLVVGADGANSWLRRQMDIPLTHWDYGHSALVANVRTVD----PHNSVARQIFT----PQGPLAFLPMSEPNM 222 (405)
T ss_pred --CEEEeCEEEEeCCCCChhHHHcCCCeeEEeeccEEEEEEEEccC----CCCCEEEEEEc----CCCceEEEECCCCCe
Confidence 689999999999999999999987622 12 122222222211 11122223332 2334555676532
Q ss_pred eEEEEEeccC------CCcHHHHHHHHHHhhhcccCCCeEE-eEEeeecCCCCCCcccCCCEEEEccCCcCcccCCcccH
Q 012488 269 VAVGTGTVTH------KGDIKKFQLATRNRAKDKILGGKII-RVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGI 341 (462)
Q Consensus 269 ~~v~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~i~~~~~~~~~~~~v~liGDAAh~~~P~~G~G~ 341 (462)
.++....... ....+++.+.+.+.+...+...++. ....+++.....++|..+|++|+|||||.++|+.|||+
T Consensus 223 ~~~~w~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~pl~~~~~~~~~~~rv~LiGDAAH~~~P~~GQG~ 302 (405)
T PRK08850 223 SSIVWSTEPLRAEALLAMSDEQFNKALTAEFDNRLGLCEVVGERQAFPLKMRYARDFVRERVALVGDAAHTIHPLAGQGV 302 (405)
T ss_pred EEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhhCcEEEcccccEEecceeeccccccCcEEEEEhhhhcCCccccccH
Confidence 2322221110 1112334444443332222111111 12345555556678899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhhhhHHHHHHHhHhhhccCchh
Q 012488 342 YFAAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNPA 402 (462)
Q Consensus 342 ~~a~~da~~la~~l~~a~~~~~~~~~~~~L~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (462)
|+||+||..|++.|......+.+......|..|++.++..........+.+.+++....+.
T Consensus 303 n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~l~~~~~~~~~~ 363 (405)
T PRK08850 303 NLGLLDAASLAQEILALWQQGRDIGLKRNLRGYERWRKAEAAKMIAAMQGFRDLFSGSNPA 363 (405)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHCCCchH
Confidence 9999999999999988765443323467888999888888888888888888888876543
No 14
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=100.00 E-value=1.2e-35 Score=291.29 Aligned_cols=319 Identities=24% Similarity=0.316 Sum_probs=199.0
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC-CCCCCcccccC---ccccccCCCChhhHhccc----ceEEEEcC-
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL-DNCKPCGGAIP---LCMVGEFDLPLDIIDRKV----TKMKMISP- 120 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~-~~~~~~g~~i~---~~~l~~~g~~~~~~~~~~----~~~~~~~~- 120 (462)
++||+||||||+||++|+.|+++|++|+||||++ .....+|..+. .+.|+++|+.+.+..... ....+...
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~ 80 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGI 80 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEET
T ss_pred CceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeeccc
Confidence 4799999999999999999999999999999998 33344565554 456888898887776541 22233332
Q ss_pred CCc---------eEeccCcccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccC
Q 012488 121 SNV---------AVDIGQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKG 190 (462)
Q Consensus 121 ~~~---------~~~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~ 190 (462)
.+. ...+. ..........+.|..|++.|.+.+++.|+++++++ +++++. + .+.+.+.+.++
T Consensus 81 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~--d-~~~~~~~~~~~----- 151 (356)
T PF01494_consen 81 SDSRIWVENPQIREDME-IDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQ--D-DDGVTVVVRDG----- 151 (356)
T ss_dssp TTSEEEEEEEEEEEECH-STSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEE--E-TTEEEEEEEET-----
T ss_pred CCccceeeecccceeee-ccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccc--c-ccccccccccc-----
Confidence 011 01111 11233445578999999999999999999999998 888773 3 33466666554
Q ss_pred CCCceeEEEecEEEecCCCChHhhhhhcCCCCce--EEEEEE-EEecCCcccc-cccCeeEEEecCCCCCCeEEEEEeCC
Q 012488 191 GVGEKRTLEVDAVIGADGANSRVAKSINAGDYDY--AIAFQE-RVKIPDEKMV-YYENLAEMYVGDDVSPDFYGWVFPKC 266 (462)
Q Consensus 191 ~~~~~~~~~adlvI~AdG~~S~vr~~l~~~~~~~--~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~w~~p~~ 266 (462)
.+++..+++||+||+|||.+|.+|++++...... ...+.. .+.... ... +..+ ..++.. .+...+|++|..
T Consensus 152 ~~g~~~~i~adlvVgADG~~S~vR~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~--~~~~~~~~~p~~ 226 (356)
T PF01494_consen 152 EDGEEETIEADLVVGADGAHSKVRKQLGIDRPGPDTVYRWGWFGIVFDS-DLSDPWED--HCFIYS--PPSGGFAIIPLE 226 (356)
T ss_dssp CTCEEEEEEESEEEE-SGTT-HHHHHTTGGEEEEEEEEEEEEEEEEEEC-HSHTTTSC--EEEEEE--ETTEEEEEEEET
T ss_pred cCCceeEEEEeeeecccCcccchhhhccccccCcccccccccccccccc-cccccccc--cccccc--ccccceeEeecc
Confidence 2355568999999999999999999998662111 111111 111111 111 1111 222222 233455788876
Q ss_pred C-c-eEE--EEEeccC--CCcH----HHHHHHHHHhhhcccCCCeEEeEEeeecCCCCCCcccCCCEEEEccCCcCcccC
Q 012488 267 D-H-VAV--GTGTVTH--KGDI----KKFQLATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKC 336 (462)
Q Consensus 267 ~-~-~~v--~~~~~~~--~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~v~liGDAAh~~~P~ 336 (462)
+ . ..+ ....... .... +.+.+.+.+.+........+.+...++++.....+|..+||+|||||||.++|+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grv~LiGDAAh~~~P~ 306 (356)
T PF01494_consen 227 NGDRSRFVWFLPFDESKEERPEEFSPEELFANLPEIFGPDLLETEIDEISAWPIPQRVADRWVKGRVLLIGDAAHAMDPF 306 (356)
T ss_dssp TTTEEEEEEEEETTTTTCCSTHCHHHHHHHHHHHHHHHTCHHHHEEEEEEEEEEEEEEESSSEETTEEE-GGGTEEE-CC
T ss_pred CCccceEEEeeeccccccccccccccccccccccccccccccccccccccccccccccccccccceeEEeccceeeeccc
Confidence 6 2 211 1211111 1112 233333333333222223555666677666667788899999999999999999
Q ss_pred CcccHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhhhhH
Q 012488 337 SGEGIYFAAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPT 385 (462)
Q Consensus 337 ~G~G~~~a~~da~~la~~l~~a~~~~~~~~~~~~L~~y~~~~~~~~~~~ 385 (462)
.|||+|+||+||..|++.|....+. + ..++.|+.|++.++......
T Consensus 307 ~GqG~n~Ai~da~~La~~L~~~~~g-~--~~~~~l~~Y~~~r~~~~~~~ 352 (356)
T PF01494_consen 307 SGQGINMAIEDAAALAELLAAALKG-E--ASEEALKAYEQERRPRARKA 352 (356)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHTT-S--SHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCcccccHHHHHHHHHHHhcC-C--cHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987653 2 34566767766666554443
No 15
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=100.00 E-value=4.4e-34 Score=285.14 Aligned_cols=331 Identities=20% Similarity=0.202 Sum_probs=215.9
Q ss_pred CccEEEECCchHHHHHHHHHHHCC--CcEEEEcCCCCCC---CCcccccCc---cccccCCCChhhHhc--ccceEEEEc
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNG--VETFLIERKLDNC---KPCGGAIPL---CMVGEFDLPLDIIDR--KVTKMKMIS 119 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g--~~v~v~E~~~~~~---~~~g~~i~~---~~l~~~g~~~~~~~~--~~~~~~~~~ 119 (462)
.+||+||||||+||++|+.|+++| ++|+|+||.+... ..++.++++ +.|+++|+.+.+... ....+.+++
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~ 80 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITD 80 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEe
Confidence 379999999999999999999995 9999999987321 235556654 578899998877543 244555554
Q ss_pred CCCc------eEeccC-cccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCC
Q 012488 120 PSNV------AVDIGQ-TLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGG 191 (462)
Q Consensus 120 ~~~~------~~~~~~-~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~ 191 (462)
..+. ...+.. ......+.+.++|..|.+.|.+.+.+.|+++++++ |++++. +++.+.+++.++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~---~~~~v~v~~~~g------ 151 (403)
T PRK07333 81 SRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFET---RDEGVTVTLSDG------ 151 (403)
T ss_pred CCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEE---cCCEEEEEECCC------
Confidence 3321 112211 11223345578999999999999999999999887 888872 344577777666
Q ss_pred CCceeEEEecEEEecCCCChHhhhhhcCCCC--ce-EEEEEEEEecCCcccccccCeeEEEecCCCCCCeEEEEEeCCCc
Q 012488 192 VGEKRTLEVDAVIGADGANSRVAKSINAGDY--DY-AIAFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDH 268 (462)
Q Consensus 192 ~~~~~~~~adlvI~AdG~~S~vr~~l~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p~~~~ 268 (462)
.+++||+||+|||.+|.+|+.++.... .+ ...+...+..... ..+....++ .+.+++|++|..+.
T Consensus 152 ----~~~~ad~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~----~~~g~~~~~Pl~~~ 219 (403)
T PRK07333 152 ----SVLEARLLVAADGARSKLRELAGIKTVGWDYGQSGIVCTVEHERP----HGGRAEEHF----LPAGPFAILPLKGN 219 (403)
T ss_pred ----CEEEeCEEEEcCCCChHHHHHcCCCcccccCCCEEEEEEEEcCCC----CCCEEEEEe----CCCCceEEeECCCC
Confidence 689999999999999999999887532 11 1111111211111 112222222 24557888898755
Q ss_pred e-EEEEEeccC------CCcHHHHHHHHHHhhhcccCCCeEE-eEEeeecCCCCCCcccCCCEEEEccCCcCcccCCccc
Q 012488 269 V-AVGTGTVTH------KGDIKKFQLATRNRAKDKILGGKII-RVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEG 340 (462)
Q Consensus 269 ~-~v~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~i~~~~~~~~~~~~v~liGDAAh~~~P~~G~G 340 (462)
. .+....... ....+.+.+.+.+.+...+...... ....+++.....++|..+|++|+|||||.++|+.|||
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grv~LvGDAAH~~~P~~GqG 299 (403)
T PRK07333 220 RSSLVWTERTADAERLVALDDLVFEAELEQRFGHRLGELKVLGKRRAFPLGLTLARSFVAPRFALVGDAAHGIHPIAGQG 299 (403)
T ss_pred CeEEEEECCHHHHHHHHCCCHHHHHHHHHHHhhhhcCceEeccCccEeechhhhhhhccCCCEEEEechhhcCCCccccc
Confidence 3 332221100 0111222333333332222111111 1123455445667889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhhhhHHHHHHHhHhhhccCch
Q 012488 341 IYFAAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNP 401 (462)
Q Consensus 341 ~~~a~~da~~la~~l~~a~~~~~~~~~~~~L~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (462)
+|+||+||..|++.|....+.+.+......|..|++.++..........+.+.+++....+
T Consensus 300 ~n~ai~Da~~La~~L~~~~~~~~~~~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~~ 360 (403)
T PRK07333 300 LNLGLKDVAALAEVVVEAARLGLDIGSLDVLERYQRWRRFDTVRMGVTTDVLNRLFSNDST 360 (403)
T ss_pred hhhhHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCch
Confidence 9999999999999999887544322467888899987766666666667777777766553
No 16
>PRK06185 hypothetical protein; Provisional
Probab=100.00 E-value=4.6e-34 Score=285.26 Aligned_cols=337 Identities=18% Similarity=0.192 Sum_probs=223.0
Q ss_pred CCCCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCC-CCCcccccC---ccccccCCCChhhHhc---ccceEEEE
Q 012488 46 LTNRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDN-CKPCGGAIP---LCMVGEFDLPLDIIDR---KVTKMKMI 118 (462)
Q Consensus 46 ~~~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~-~~~~g~~i~---~~~l~~~g~~~~~~~~---~~~~~~~~ 118 (462)
|..+++||+||||||+|+++|+.|+++|++|+|+|+++.. ...++..++ .+.|+++|+++.+... .+..+.++
T Consensus 2 ~~~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~ 81 (407)
T PRK06185 2 AEVETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFE 81 (407)
T ss_pred CccccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEE
Confidence 4567899999999999999999999999999999998632 223455664 4478899998877552 24455555
Q ss_pred cCCCce--EeccCcccCCCeEEeeehHHHHHHHHHHHHHC-CCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCc
Q 012488 119 SPSNVA--VDIGQTLKPHEYIGMVRREVLDAYLRERAEKN-GASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGE 194 (462)
Q Consensus 119 ~~~~~~--~~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~-gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 194 (462)
...+.. .++........+.+.+.+..+.+.|.+.+.+. |++++.++ ++++.. +++....|.+... +.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~--~~~~v~~v~~~~~-------~g 152 (407)
T PRK06185 82 IGGRTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIE--EGGRVTGVRARTP-------DG 152 (407)
T ss_pred ECCeEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEE--eCCEEEEEEEEcC-------CC
Confidence 433221 12222112234456789999999999988775 79999887 888873 2222222444321 11
Q ss_pred eeEEEecEEEecCCCChHhhhhhcCCC--CceEEEEEEEEecCCcccccccCeeEEEecCCCCCCeEEEEEeCCCceEEE
Q 012488 195 KRTLEVDAVIGADGANSRVAKSINAGD--YDYAIAFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHVAVG 272 (462)
Q Consensus 195 ~~~~~adlvI~AdG~~S~vr~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p~~~~~~v~ 272 (462)
+.+++||+||+|||.+|.+|+.++... +.+...+ ..+..+... ..+.....+ ..++++++++|..+...++
T Consensus 153 ~~~i~a~~vI~AdG~~S~vr~~~gi~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~----~~~~g~~~llP~~~~~~i~ 225 (407)
T PRK06185 153 PGEIRADLVVGADGRHSRVRALAGLEVREFGAPMDV-LWFRLPREP--DDPESLMGR----FGPGQGLIMIDRGDYWQCG 225 (407)
T ss_pred cEEEEeCEEEECCCCchHHHHHcCCCccccCCCcee-EEEecCCCC--CCCcccceE----ecCCcEEEEEcCCCeEEEE
Confidence 247999999999999999999998752 2221111 111222211 011111111 2345577788876544444
Q ss_pred EEeccCC------CcHHHHHHHHHHhh---hcccCC-CeEEeEEeeecCCCCCCcccCCCEEEEccCCcCcccCCcccHH
Q 012488 273 TGTVTHK------GDIKKFQLATRNRA---KDKILG-GKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIY 342 (462)
Q Consensus 273 ~~~~~~~------~~~~~~~~~~~~~~---~~~l~~-~~~~~~~~~~i~~~~~~~~~~~~v~liGDAAh~~~P~~G~G~~ 342 (462)
....... ...+.+.+.+.+.+ .+.+.. ........+++......+|..+|++|+|||||.++|+.|||+|
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~n 305 (407)
T PRK06185 226 YVIPKGGYAALRAAGLEAFRERVAELAPELADRVAELKSWDDVKLLDVRVDRLRRWHRPGLLCIGDAAHAMSPVGGVGIN 305 (407)
T ss_pred EEecCCCchhhhhhhHHHHHHHHHHhCccHHHHHhhcCCccccEEEEEeccccccccCCCeEEEeccccccCcccccchh
Confidence 4332111 12234444443321 112211 1223345566766677888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhhhhHHHHHHHhHhhhccCc
Q 012488 343 FAAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSN 400 (462)
Q Consensus 343 ~a~~da~~la~~l~~a~~~~~~~~~~~~L~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (462)
+||+|+..|++.|.+++..++ .+...|..|++.++.+.......++.+.++|.++.
T Consensus 306 lgl~Da~~La~~l~~~~~~~~--~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~ 361 (407)
T PRK06185 306 LAIQDAVAAANILAEPLRRGR--VSDRDLAAVQRRREFPTRVTQALQRRIQRRLLAPA 361 (407)
T ss_pred HHHHHHHHHHHHHHHHhccCC--ccHHHHHHHHHHhhhHHHHHHHHHHHHHHhhcccc
Confidence 999999999999998876653 34588999999998888888888899998887754
No 17
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=100.00 E-value=5.9e-34 Score=285.93 Aligned_cols=335 Identities=19% Similarity=0.227 Sum_probs=219.7
Q ss_pred ccEEEECCchHHHHHHHHHHH----CCCcEEEEcCCC-CCCC------------CcccccC---ccccccCCCChhhHhc
Q 012488 51 LRVAVIGGGPAGGAAAETLAK----NGVETFLIERKL-DNCK------------PCGGAIP---LCMVGEFDLPLDIIDR 110 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~----~g~~v~v~E~~~-~~~~------------~~g~~i~---~~~l~~~g~~~~~~~~ 110 (462)
|||+||||||+|+++|+.|++ +|++|+|||+++ +... ..+.+++ .+.|+.+|+++.+...
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~ 80 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD 80 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence 699999999999999999999 899999999964 2111 1233343 4578899999888653
Q ss_pred ---ccceEEEEcCCCc-eEeccCcccCCCeEEeeehHHHHHHHHHHHHHCC---CEEEcce-eEEEEec----CCCCCCE
Q 012488 111 ---KVTKMKMISPSNV-AVDIGQTLKPHEYIGMVRREVLDAYLRERAEKNG---ASVINGL-FMKMDLP----RNFEQPY 178 (462)
Q Consensus 111 ---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~g---v~i~~~~-v~~~~~~----~~~~~~~ 178 (462)
.+..+.+++..+. .+.+........+.+++++..+.+.|.+.+++.+ +++++++ |.+++.. ..+++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v 160 (437)
T TIGR01989 81 RIQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWV 160 (437)
T ss_pred cCCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCce
Confidence 3445566554432 2333322122334557899999999999998875 8999888 9888742 1123467
Q ss_pred EEEEeccCCccCCCCceeEEEecEEEecCCCChHhhhhhcCCC--CceEE-EEEEEEecCCcccccccCeeEEEecCCCC
Q 012488 179 VLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSRVAKSINAGD--YDYAI-AFQERVKIPDEKMVYYENLAEMYVGDDVS 255 (462)
Q Consensus 179 ~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S~vr~~l~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (462)
.|++.+| .+++||+||+|||.+|.+|+.++... +.|.. .+...+..... ..++....++.
T Consensus 161 ~v~~~~g----------~~i~a~llVgADG~~S~vR~~~gi~~~g~~y~q~~~v~~v~~~~~---~~~~~~~~~f~---- 223 (437)
T TIGR01989 161 HITLSDG----------QVLYTKLLIGADGSNSNVRKAANIDTTGWNYNQHAVVATLKLEEA---TENDVAWQRFL---- 223 (437)
T ss_pred EEEEcCC----------CEEEeeEEEEecCCCChhHHHcCCCccceeeccEEEEEEEEcccC---CCCCeEEEEEC----
Confidence 8888776 78999999999999999999998763 22221 11112222111 11111111221
Q ss_pred CCeEEEEEeCCCce-EEEEEeccC------CCcHHHHHHHHHHhh------------------------hccc-------
Q 012488 256 PDFYGWVFPKCDHV-AVGTGTVTH------KGDIKKFQLATRNRA------------------------KDKI------- 297 (462)
Q Consensus 256 ~~~~~w~~p~~~~~-~v~~~~~~~------~~~~~~~~~~~~~~~------------------------~~~l------- 297 (462)
+.+.+.++|..+.. .+....... ....+++.+.+...+ ...+
T Consensus 224 ~~g~~~~lPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~~~~~ 303 (437)
T TIGR01989 224 PTGPIALLPLPDNNSTLVWSTSPEEALRLLSLPPEDFVDALNAAFDLGYSDHPYSYLLDYAMEKLNEDIGFRTEGSKSCF 303 (437)
T ss_pred CCCCEEEeECCCCCEEEEEeCCHHHHHHHHcCCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccc
Confidence 34456667766542 222221100 011233333332222 0000
Q ss_pred --CC--CeEE--eEEeeecCCCCCCcccCCCEEEEccCCcCcccCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCChhHH
Q 012488 298 --LG--GKII--RVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIIEGSENGTRMIDEGDL 371 (462)
Q Consensus 298 --~~--~~~~--~~~~~~i~~~~~~~~~~~~v~liGDAAh~~~P~~G~G~~~a~~da~~la~~l~~a~~~~~~~~~~~~L 371 (462)
+. ..+. ....+++.....++|..+|++|+|||||.++|+.|||+|+||+||..|++.|....+.+.+..+...|
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~La~~L~~~~~~~~~~~~~~~L 383 (437)
T TIGR01989 304 QVPPRVIGVVDKSRAAFPLGLGHADEYVTKRVALVGDAAHRVHPLAGQGVNLGFGDVASLVKALAEAVSVGADIGSISSL 383 (437)
T ss_pred ccCchhheeecccceeEEecccchhhccCCCEEEEchhhcCCCCChhhhHHHHHHHHHHHHHHHHHHHhcCCChhHHHHH
Confidence 00 0001 11355666666778899999999999999999999999999999999999999887665433345789
Q ss_pred HHHHHHHHHhhhhHHHHHHHhHhhhccCchh
Q 012488 372 RKYLEKWDKTYWPTYKVLDVLQKVFYRSNPA 402 (462)
Q Consensus 372 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (462)
..|++.++......+..++.+.++|.+..+.
T Consensus 384 ~~Y~~~R~~~~~~v~~~t~~l~~l~~~~~~~ 414 (437)
T TIGR01989 384 KPYERERYAKNVVLLGLVDKLHKLYATDFPP 414 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCccH
Confidence 9999999888888888888899888876653
No 18
>PRK09126 hypothetical protein; Provisional
Probab=100.00 E-value=2.3e-34 Score=286.00 Aligned_cols=331 Identities=18% Similarity=0.214 Sum_probs=216.9
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCC----CCCccccc--C---ccccccCCCChhhHhcc---cceEEE
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDN----CKPCGGAI--P---LCMVGEFDLPLDIIDRK---VTKMKM 117 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~----~~~~g~~i--~---~~~l~~~g~~~~~~~~~---~~~~~~ 117 (462)
++||+||||||+|+++|+.|+++|++|+|+||.+.. ...+|..+ + .+.|+++|+.+.+.... ...+.+
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~ 82 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKV 82 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEE
Confidence 589999999999999999999999999999998742 12345443 2 45788899877765432 334455
Q ss_pred EcCCCc-eEeccCc-ccCCCeEEeeehHHHHHHHHHHHHH-CCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCC
Q 012488 118 ISPSNV-AVDIGQT-LKPHEYIGMVRREVLDAYLRERAEK-NGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVG 193 (462)
Q Consensus 118 ~~~~~~-~~~~~~~-~~~~~~~~~v~r~~l~~~L~~~~~~-~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 193 (462)
++.... .+.+... .....+.+.+.|..+.+.|.+.+.+ .|+++++++ |++++. +++.+.|++.+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~---~~~~~~v~~~~g-------- 151 (392)
T PRK09126 83 LNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRT---DDDGAQVTLANG-------- 151 (392)
T ss_pred EcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEE---cCCeEEEEEcCC--------
Confidence 543321 2333211 1122344568899999999888765 589999998 888873 334577877776
Q ss_pred ceeEEEecEEEecCCCChHhhhhhcCCCC--ceE-EEEEEEEecCCcccccccCeeEEEecCCCCCCeEEEEEeCCCce-
Q 012488 194 EKRTLEVDAVIGADGANSRVAKSINAGDY--DYA-IAFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHV- 269 (462)
Q Consensus 194 ~~~~~~adlvI~AdG~~S~vr~~l~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p~~~~~- 269 (462)
.+++||+||+|||.+|.+|+.++.... .+. ..+...+.... ........+++ ++.++|++|..+..
T Consensus 152 --~~~~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~----~~~~~~~~P~~~~~~ 221 (392)
T PRK09126 152 --RRLTARLLVAADSRFSATRRQLGIGADMHDFGRTMLVCRMRHEL----PHHHTAWEWFG----YGQTLALLPLNGHLS 221 (392)
T ss_pred --CEEEeCEEEEeCCCCchhhHhcCCCccccccCCeEEEEEEeccC----CCCCEEEEEec----CCCCeEEeECCCCCE
Confidence 689999999999999999999976521 111 11111121111 01122223333 23467888876553
Q ss_pred EEEEEeccC------CCcHHHHHHHHHHhhhcccCCCe-EEeEEeeecCCCCCCcccCCCEEEEccCCcCcccCCcccHH
Q 012488 270 AVGTGTVTH------KGDIKKFQLATRNRAKDKILGGK-IIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIY 342 (462)
Q Consensus 270 ~v~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~i~~~~~~~~~~~~v~liGDAAh~~~P~~G~G~~ 342 (462)
++......+ ....+++.+.+.+.+...+.... ......+++.....++|..+|++|+|||||.++|++|||+|
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~ 301 (392)
T PRK09126 222 SLVLTLPPDQIEALLALDPEAFAAEVTARFKGRLGAMRLVSSRHAYPLVAVYAHRFVAKRFALIGDAAVGMHPVTAHGFN 301 (392)
T ss_pred EEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhccCeEEcCCCcEeechHHHHHHHhhcceEEEehhhhcCCCcccchhh
Confidence 333322111 01122333333333333222111 11223344444455678899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhhhhHHHHHHHhHhhhccCch
Q 012488 343 FAAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNP 401 (462)
Q Consensus 343 ~a~~da~~la~~l~~a~~~~~~~~~~~~L~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (462)
+||+||..|++.|..+++.+.+..+++.|..|++.++......+...+.+.+++.....
T Consensus 302 ~ai~da~~la~~L~~~~~~~~~~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~ 360 (392)
T PRK09126 302 LGLKGQDILARLILAAARRGQDIGAASLLERYERKHRLATRPLYHATNAIAALYTDDRP 360 (392)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCch
Confidence 99999999999999887544322357889999999998888888888888887776543
No 19
>PRK08244 hypothetical protein; Provisional
Probab=100.00 E-value=3.9e-34 Score=291.93 Aligned_cols=328 Identities=19% Similarity=0.166 Sum_probs=215.9
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCC-CCcccccC---ccccccCCCChhhHhcc--cceEEEEcCCC
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNC-KPCGGAIP---LCMVGEFDLPLDIIDRK--VTKMKMISPSN 122 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~-~~~g~~i~---~~~l~~~g~~~~~~~~~--~~~~~~~~~~~ 122 (462)
+++||+||||||+||++|+.|+++|++|+||||.+... ...+.+++ .+.|+++|+.+.+.... .....+....+
T Consensus 1 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 80 (493)
T PRK08244 1 MKYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDT 80 (493)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccc
Confidence 35899999999999999999999999999999997432 22333443 45788999988876643 33334433221
Q ss_pred ceEeccCcccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEec
Q 012488 123 VAVDIGQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVD 201 (462)
Q Consensus 123 ~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ad 201 (462)
..++........+...+.|..+++.|.+.+++.|++++.++ +++++. +++.+.+++.+.+ + ..++++|
T Consensus 81 -~~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~---~~~~v~v~~~~~~------g-~~~i~a~ 149 (493)
T PRK08244 81 -RLDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQ---DGDGVEVVVRGPD------G-LRTLTSS 149 (493)
T ss_pred -cCCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEE---cCCeEEEEEEeCC------c-cEEEEeC
Confidence 12222111223445578999999999999999999999987 888872 3445777776421 2 2579999
Q ss_pred EEEecCCCChHhhhhhcCCC--CceE-EEEEEEEecCCcccccccCeeEEEecCCCCCCeEEEEEeCCCce-EEEEEecc
Q 012488 202 AVIGADGANSRVAKSINAGD--YDYA-IAFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHV-AVGTGTVT 277 (462)
Q Consensus 202 lvI~AdG~~S~vr~~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p~~~~~-~v~~~~~~ 277 (462)
+||+|||.+|.+|++++... ..+. ..+...+...... +.....++ .+.+++|++|..+.. .+......
T Consensus 150 ~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~~----~~~~~~~~----~~~g~~~~~P~~~~~~~~~~~~~~ 221 (493)
T PRK08244 150 YVVGADGAGSIVRKQAGIAFPGTDATFTAMLGDVVLKDPP----PSSVLSLC----TREGGVMIVPLSGGIYRVLIIDPE 221 (493)
T ss_pred EEEECCCCChHHHHhcCCCccCCCcceEEEEEEEEecCCC----CcceeEEE----eCCceEEEEECCCCeEEEEEEcCC
Confidence 99999999999999997652 1111 1111122221110 11111222 245578888987653 23222111
Q ss_pred -------CCCcHHHHHHHHHHhhhcccCCCeEEeEEeeecCCCCCCcccCCCEEEEccCCcCcccCCcccHHHHHHHHHH
Q 012488 278 -------HKGDIKKFQLATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYFAAKSGRM 350 (462)
Q Consensus 278 -------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~v~liGDAAh~~~P~~G~G~~~a~~da~~ 350 (462)
.....+++.+.+.+.+...+..........+++.....++|..+||+|+|||||.++|+.|||+|+||+||..
T Consensus 222 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~ 301 (493)
T PRK08244 222 RPQVPKDEPVTLEELKTSLIRICGTDFGLNDPVWMSRFGNATRQAERYRSGRIFLAGDAAHIHFPAGGQGLNVGLQDAMN 301 (493)
T ss_pred cccccCCCCCCHHHHHHHHHHhhCCCCCcCCeeEEEecccceeeHhhhccCcEEEeecceeccCCccccccccchhhHHH
Confidence 1123455655555544333322233344445555556678889999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCChhHHHHHHHHHHHhhhhHHHHHHHhHhhhcc
Q 012488 351 CAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYR 398 (462)
Q Consensus 351 la~~l~~a~~~~~~~~~~~~L~~y~~~~~~~~~~~~~~~~~~~~~~~~ 398 (462)
|++.|...++.. ..+..|..|++.++......+.......+++..
T Consensus 302 La~~La~~l~g~---~~~~lL~~Ye~eR~~~~~~~~~~~~~~~~~~~~ 346 (493)
T PRK08244 302 LGWKLAAAIKGW---APDWLLDSYHAERHPVGTALLRNTEVQTKLFDF 346 (493)
T ss_pred HHHHHHHHHcCC---CCchhhhhhHHHHHHHHHHHHHHhHHHHHHhcC
Confidence 999999887432 456778888887777766666665556665543
No 20
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=100.00 E-value=7.9e-34 Score=281.59 Aligned_cols=330 Identities=18% Similarity=0.188 Sum_probs=206.6
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCC---CCCcccccCc---cccccCCCChhhHhcc--cceEEEEcC
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDN---CKPCGGAIPL---CMVGEFDLPLDIIDRK--VTKMKMISP 120 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~---~~~~g~~i~~---~~l~~~g~~~~~~~~~--~~~~~~~~~ 120 (462)
|++||+||||||+||++|+.|+++|++|+|+||.+.. ...+++.+.+ +.|+++|+.+.+.... ...+.++..
T Consensus 1 ~~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~ 80 (392)
T PRK08243 1 MRTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFD 80 (392)
T ss_pred CcceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEEC
Confidence 3579999999999999999999999999999999842 2234444543 4789999988886542 344555442
Q ss_pred CCceE--eccCcccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeE
Q 012488 121 SNVAV--DIGQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRT 197 (462)
Q Consensus 121 ~~~~~--~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 197 (462)
+... ++... ........+.|..+.+.|.+.+.+.|+++++++ +++++ +.+++.+.|++... |+..+
T Consensus 81 -g~~~~~~~~~~-~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~--~~~~~~~~V~~~~~-------G~~~~ 149 (392)
T PRK08243 81 -GRRHRIDLTEL-TGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALH--DFDSDRPYVTYEKD-------GEEHR 149 (392)
T ss_pred -CEEEEeccccc-cCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEE--ecCCCceEEEEEcC-------CeEEE
Confidence 3222 22111 112233456788888889888888899999888 88876 22344566776422 34468
Q ss_pred EEecEEEecCCCChHhhhhhcCCC-CceEEE--EEEEEecCCcccccccCeeEEEecCCCCCCeEEEEEeCCCc-eEEEE
Q 012488 198 LEVDAVIGADGANSRVAKSINAGD-YDYAIA--FQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDH-VAVGT 273 (462)
Q Consensus 198 ~~adlvI~AdG~~S~vr~~l~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p~~~~-~~v~~ 273 (462)
++||+||+|||.+|.+|++++... ..+... +.....+.... ...+. .++.. .+.++.|++|.++. ..+.+
T Consensus 150 i~ad~vVgADG~~S~vR~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~ 223 (392)
T PRK08243 150 LDCDFIAGCDGFHGVSRASIPAGALRTFERVYPFGWLGILAEAP--PVSDE-LIYAN---HERGFALCSMRSPTRSRYYL 223 (392)
T ss_pred EEeCEEEECCCCCCchhhhcCcchhhceecccCceEEEEeCCCC--CCCCc-eEEee---CCCceEEEecCCCCcEEEEE
Confidence 999999999999999999997642 111111 11111111100 00111 11211 23445666554332 22221
Q ss_pred EeccC--C--CcHHHHHHHHHHhhhc----ccCCCeEEeEEeeecCCCCCCcccCCCEEEEccCCcCcccCCcccHHHHH
Q 012488 274 GTVTH--K--GDIKKFQLATRNRAKD----KILGGKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYFAA 345 (462)
Q Consensus 274 ~~~~~--~--~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~i~~~~~~~~~~~~v~liGDAAh~~~P~~G~G~~~a~ 345 (462)
..... . ...+.+.+.+.+.+.. .+..........+++......+|..||++|+|||||.++|++|||+|+||
T Consensus 224 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grvvLvGDAAH~~~P~~GqG~n~ai 303 (392)
T PRK08243 224 QCPLDDKVEDWSDERFWDELRRRLPPEDAERLVTGPSIEKSIAPLRSFVAEPMQYGRLFLAGDAAHIVPPTGAKGLNLAA 303 (392)
T ss_pred EecCCCCcccCChhHHHHHHHHhcCcccccccccCccccccceeeeeceeccceeCCEEEEecccccCCCCcCcchhHHH
Confidence 11110 0 1122233333333322 11112222233344555556678889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhhhhHHHHHHHhHhhhccC
Q 012488 346 KSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRS 399 (462)
Q Consensus 346 ~da~~la~~l~~a~~~~~~~~~~~~L~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (462)
+||..|++.|.+..+.+ .+..|..|++.++.......+....+.++++..
T Consensus 304 ~Da~~La~~L~~~~~~~----~~~~L~~Ye~~r~~r~~~~~~~~~~~~~~~~~~ 353 (392)
T PRK08243 304 SDVRYLARALVEFYREG----DTALLDAYSATALRRVWKAERFSWWMTSMLHRF 353 (392)
T ss_pred HHHHHHHHHHHHHhccC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 99999999998876432 367888888888877777777777777776653
No 21
>PRK07045 putative monooxygenase; Reviewed
Probab=100.00 E-value=6.5e-34 Score=282.20 Aligned_cols=344 Identities=15% Similarity=0.187 Sum_probs=211.5
Q ss_pred CCCCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCC-cccccC---ccccccCCCChhhHhcc---cceEEEE
Q 012488 46 LTNRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKP-CGGAIP---LCMVGEFDLPLDIIDRK---VTKMKMI 118 (462)
Q Consensus 46 ~~~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~-~g~~i~---~~~l~~~g~~~~~~~~~---~~~~~~~ 118 (462)
|.+.++||+||||||+|+++|+.|+++|++|+|+||.+..... .+..++ .++|+++|+.+.+.... ...+.++
T Consensus 1 ~~~~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~ 80 (388)
T PRK07045 1 MKNNPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLY 80 (388)
T ss_pred CCCceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEe
Confidence 3456689999999999999999999999999999999843222 223344 35788999988776542 2233333
Q ss_pred cCCCceEe-ccC-cccCCCeEEeeehHHHHHHHHHHHHH-CCCEEEcce-eEEEEecCCCCC-CEEEEEeccCCccCCCC
Q 012488 119 SPSNVAVD-IGQ-TLKPHEYIGMVRREVLDAYLRERAEK-NGASVINGL-FMKMDLPRNFEQ-PYVLYYTEYDGTKGGVG 193 (462)
Q Consensus 119 ~~~~~~~~-~~~-~~~~~~~~~~v~r~~l~~~L~~~~~~-~gv~i~~~~-v~~~~~~~~~~~-~~~v~~~~~~~~~~~~~ 193 (462)
. ++.... +.. ......+...+.|..|.+.|.+.+.+ .|+++++++ +++++. .+++ .+.|++.+|
T Consensus 81 ~-~g~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~--~~~~~~~~v~~~~g-------- 149 (388)
T PRK07045 81 H-DKELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIER--DADGTVTSVTLSDG-------- 149 (388)
T ss_pred c-CCcEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEE--CCCCcEEEEEeCCC--------
Confidence 2 333221 111 11122334467899999999999865 579999998 988873 3333 245777665
Q ss_pred ceeEEEecEEEecCCCChHhhhhh-cCC--CCce--EEEEEEEEecCCcccccccCeeEEEecCCCCCCeEEEEEeCCCc
Q 012488 194 EKRTLEVDAVIGADGANSRVAKSI-NAG--DYDY--AIAFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDH 268 (462)
Q Consensus 194 ~~~~~~adlvI~AdG~~S~vr~~l-~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p~~~~ 268 (462)
.++++|+||+|||.+|.+|+++ +.. ...+ ...+ ..+...... ++....+++. +.++.|++|..+.
T Consensus 150 --~~~~~~~vIgADG~~S~vR~~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~---~~~~~~~~p~~~~ 219 (388)
T PRK07045 150 --ERVAPTVLVGADGARSMIRDDVLRMPAERVPYATPMAF-GTIALTDSV----RECNRLYVDS---NQGLAYFYPIGDQ 219 (388)
T ss_pred --CEEECCEEEECCCCChHHHHHhhCCCcccCCCCcceeE-EEEeccCCc----cccceEEEcC---CCceEEEEEcCCC
Confidence 6899999999999999999975 332 1222 1112 112221111 1122233332 3457788887654
Q ss_pred e-EEEEEeccCC-------CcHHHHHHHHHHhhhccc----CC-CeEEeEEeeecCCCCCCcccCCCEEEEccCCcCccc
Q 012488 269 V-AVGTGTVTHK-------GDIKKFQLATRNRAKDKI----LG-GKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTK 335 (462)
Q Consensus 269 ~-~v~~~~~~~~-------~~~~~~~~~~~~~~~~~l----~~-~~~~~~~~~~i~~~~~~~~~~~~v~liGDAAh~~~P 335 (462)
. .+........ ...+.+.+.+.+.+.+.+ .. .....+...++.....++|..+|++|+|||||.++|
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P 299 (388)
T PRK07045 220 ATRLVVSFPADEMQGYLADTTRTKLLARLNEFVGDESADAMAAIGAGTAFPLIPLGRMNLDRYHKRNVVLLGDAAHSIHP 299 (388)
T ss_pred cEEEEEEeccccchhccCCCCHHHHHHHHhhhcCccchHHHhccCcccccceeecCccccccccCCCEEEEEccccccCC
Confidence 3 3333221110 112233333333221111 00 011112223444445678889999999999999999
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhhhhHHHHHHHhHhhhccCchhHHHHHHHhcc
Q 012488 336 CSGEGIYFAAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNPAREAFVEMCAD 412 (462)
Q Consensus 336 ~~G~G~~~a~~da~~la~~l~~a~~~~~~~~~~~~L~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (462)
++|||+|+||+||..|++.|..+..... .....|..|++.++..........+.+.+.+.+..+..+.|-..++.
T Consensus 300 ~~GqG~n~ai~Da~~La~~L~~~~~~~~--~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (388)
T PRK07045 300 ITGQGMNLAIEDAGELGACLDLHLSGQI--ALADALERFERIRRPVNEAVISYGHALATTYHDRAALVANFRSQLQT 374 (388)
T ss_pred CccccHHHHHHHHHHHHHHHHhhcCCch--hHHHHHHHHHHHhhhHHHHHHhhhHHHhhhcccchhHHHHHHhhhhc
Confidence 9999999999999999999987643321 22456666666666655555566666666666666666666655543
No 22
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=100.00 E-value=1.3e-33 Score=290.56 Aligned_cols=335 Identities=17% Similarity=0.175 Sum_probs=217.5
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCC-CCCcccccC---ccccccCCCChhhHhcc--cceEEEEcCC
Q 012488 48 NRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDN-CKPCGGAIP---LCMVGEFDLPLDIIDRK--VTKMKMISPS 121 (462)
Q Consensus 48 ~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~-~~~~g~~i~---~~~l~~~g~~~~~~~~~--~~~~~~~~~~ 121 (462)
.+++||+||||||+||++|+.|+++|++|+||||.+.. ....+.+++ .+.|+++|+.+++.... ...+.+++.+
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~ 87 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAK 87 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCC
Confidence 45689999999999999999999999999999999732 233444554 44678889988876543 4456676666
Q ss_pred CceE-eccC-cccC--CCeEEeeehHHHHHHHHHHHHHC-CCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCce
Q 012488 122 NVAV-DIGQ-TLKP--HEYIGMVRREVLDAYLRERAEKN-GASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEK 195 (462)
Q Consensus 122 ~~~~-~~~~-~~~~--~~~~~~v~r~~l~~~L~~~~~~~-gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 195 (462)
+... .+.. .... ......+.|..+++.|.+.+.+. |+++++++ |++++. +++.+++++++. +|+.
T Consensus 88 g~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~---~~~~v~v~~~~~------~G~~ 158 (538)
T PRK06183 88 GRCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQ---DDDGVTVTLTDA------DGQR 158 (538)
T ss_pred CCEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEE---cCCeEEEEEEcC------CCCE
Confidence 5432 2221 1111 12224678999999999998875 89999998 999883 344588887652 1445
Q ss_pred eEEEecEEEecCCCChHhhhhhcCCC--CceEEEEEE-EEecCCcccccccCeeEEEecCCCCCCeEEEEEeCCCceE-E
Q 012488 196 RTLEVDAVIGADGANSRVAKSINAGD--YDYAIAFQE-RVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHVA-V 271 (462)
Q Consensus 196 ~~~~adlvI~AdG~~S~vr~~l~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p~~~~~~-v 271 (462)
.+++||+||+|||.+|.+|++++... ..+...|.. .+...... ........+++ +...+.++|..+... +
T Consensus 159 ~~i~ad~vVgADG~~S~vR~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~----~~~~~~~~p~~~~~~r~ 232 (538)
T PRK06183 159 ETVRARYVVGCDGANSFVRRTLGVPFEDLTFPERWLVVDVLIANDP--LGGPHTYQYCD----PARPYTSVRLPHGRRRW 232 (538)
T ss_pred EEEEEEEEEecCCCchhHHHHcCCeeeCCCccceEEEEEEecccCc--cCCCceEEEEC----CCCCEEEEEcCCCeEEE
Confidence 78999999999999999999997652 222222211 11111111 11111222322 222344445433321 1
Q ss_pred EEEec--cCC---CcHHHHHHHHHHhhhcccCCCeEEeEEeeecCCCCCCcccCCCEEEEccCCcCcccCCcccHHHHHH
Q 012488 272 GTGTV--THK---GDIKKFQLATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYFAAK 346 (462)
Q Consensus 272 ~~~~~--~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~v~liGDAAh~~~P~~G~G~~~a~~ 346 (462)
..... ... ...+.+.+.+.... ......++.+...+.+......+|..|||+|+|||||.++|+.|||+|+||+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GQG~n~gi~ 311 (538)
T PRK06183 233 EFMLLPGETEEQLASPENVWRLLAPWG-PTPDDAELIRHAVYTFHARVADRWRSGRVLLAGDAAHLMPPFAGQGMNSGIR 311 (538)
T ss_pred EEEeCCCCChhhcCCHHHHHHHHHhhC-CCCcceEEEEEEeeeEccEEhhhhccCCEEEEechhhcCCCccccchhhhHH
Confidence 11111 111 11223333332221 1111123444445555555667889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhhhhHHHHHHHhHhhhccCch
Q 012488 347 SGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNP 401 (462)
Q Consensus 347 da~~la~~l~~a~~~~~~~~~~~~L~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (462)
||..|++.|...++.. ..+..|..|+++++......+.....+.+++....+
T Consensus 312 DA~~La~kLa~~~~g~---~~~~~L~~Ye~eR~p~~~~~~~~s~~~~~~~~~~~~ 363 (538)
T PRK06183 312 DAANLAWKLAAVLRGR---AGDALLDTYEQERRPHARAMIDLAVRLGRVICPTDR 363 (538)
T ss_pred HHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCH
Confidence 9999999998665432 356789999999988888888888888888776554
No 23
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=100.00 E-value=1.3e-33 Score=269.77 Aligned_cols=287 Identities=36% Similarity=0.612 Sum_probs=198.5
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC-CCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEeccC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKL-DNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQ 129 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~-~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (462)
+||+||||||+|+++|+.|++.|++|+|+||++ .....|+..+++..++.++..............++...+.......
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPI 80 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEecc
Confidence 699999999999999999999999999999997 3334578888777776666544322222344455555554333221
Q ss_pred cccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCC
Q 012488 130 TLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADG 208 (462)
Q Consensus 130 ~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG 208 (462)
+......++|..+.+.|.+.+++.|+++++++ ++++.. +++.+.+.+.++ ..++++|+||+|||
T Consensus 81 ---~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~---~~~~~~~~~~~~---------~~~~~a~~vv~a~G 145 (295)
T TIGR02032 81 ---ETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEI---HDDRVVVIVRGG---------EGTVTAKIVIGADG 145 (295)
T ss_pred ---CCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEE---eCCEEEEEEcCc---------cEEEEeCEEEECCC
Confidence 13345579999999999999999999999887 888763 233455655443 16899999999999
Q ss_pred CChHhhhhhcCCC--CceEEEEEEEEecCCcccccccCeeEEEecCCCCCCeEEEEEeCCCc-eEEEEEecc--CCCcHH
Q 012488 209 ANSRVAKSINAGD--YDYAIAFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDH-VAVGTGTVT--HKGDIK 283 (462)
Q Consensus 209 ~~S~vr~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p~~~~-~~v~~~~~~--~~~~~~ 283 (462)
.+|.+++.++... ......+...+..+. ....++...++.+....+.+|.|.+|..+. ..++..... .....+
T Consensus 146 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~v~~~~~~~~~~~~~~ 223 (295)
T TIGR02032 146 SRSIVAKKLGLRKEPRELGVAARAEVEMPD--EEVDEDFVEVYIDRGISPGGYGWVFPKGDGTANVGVGSRSAEEGEDLK 223 (295)
T ss_pred cchHHHHhcCCCCCCcceeeEEEEEEecCC--cccCcceEEEEcCCCcCCCceEEEEeCCCCeEEEeeeeccCCCCCCHH
Confidence 9999999887653 223333333333332 122334445666655556789999998766 556655432 233344
Q ss_pred HHHHHHHHhhhcccCCCeEEeEEeeecCCC-CCCcccCCCEEEEccCCcCcccCCcccHHHHHHHHHHHHHHH
Q 012488 284 KFQLATRNRAKDKILGGKIIRVEAHPIPEH-PRPRRLSGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAI 355 (462)
Q Consensus 284 ~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~-~~~~~~~~~v~liGDAAh~~~P~~G~G~~~a~~da~~la~~l 355 (462)
+..+.+..... .+...++.+...++++.. ...++..+|++++|||||+++|++|||+++||+||..+|+.|
T Consensus 224 ~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~liGDAA~~~~P~~g~G~~~a~~~a~~aa~~~ 295 (295)
T TIGR02032 224 KYLKDFLARRP-ELKDAETVEVIGAPIPIGRPDDKTVRGNVLLVGDAAGHVKPLTGEGIYYAMRSGDVAAEVI 295 (295)
T ss_pred HHHHHHHHhCc-ccccCcEEeeeceeeccCCCCCccccCCEEEEecccCCCCCccCCcHHHHHHHHHHHHhhC
Confidence 44444433322 244455566566666664 556778899999999999999999999999999999999864
No 24
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=100.00 E-value=5.1e-34 Score=283.14 Aligned_cols=334 Identities=17% Similarity=0.168 Sum_probs=220.1
Q ss_pred CCCCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccC---ccccccCCCChhhHhc--ccceEEEEcC
Q 012488 46 LTNRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIP---LCMVGEFDLPLDIIDR--KVTKMKMISP 120 (462)
Q Consensus 46 ~~~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~---~~~l~~~g~~~~~~~~--~~~~~~~~~~ 120 (462)
|....+||+||||||+||++|+.|+++|++|+|||+.+......+.++. .+.|+++|+++.+... .+..+.+++.
T Consensus 3 ~~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 82 (388)
T PRK07494 3 MEKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDA 82 (388)
T ss_pred CCCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeC
Confidence 4445689999999999999999999999999999998743233334443 4578889998877654 3556677765
Q ss_pred CCceE-----eccC-cccCCCeEEeeehHHHHHHHHHHHHHCC-CEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCC
Q 012488 121 SNVAV-----DIGQ-TLKPHEYIGMVRREVLDAYLRERAEKNG-ASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGV 192 (462)
Q Consensus 121 ~~~~~-----~~~~-~~~~~~~~~~v~r~~l~~~L~~~~~~~g-v~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~ 192 (462)
.+... .+.. ......+.+.+.+..+.+.|.+.+.+.+ +. ++++ |.+++. +++.+.|++.++
T Consensus 83 ~g~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~---~~~~~~v~~~~g------- 151 (388)
T PRK07494 83 TGRLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRP---REDEVTVTLADG------- 151 (388)
T ss_pred CCCCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEE---cCCeEEEEECCC-------
Confidence 54321 1111 1122334457999999999999998875 55 5565 888872 344577877665
Q ss_pred CceeEEEecEEEecCCCChHhhhhhcCCC--CceE-EEEEEEEecCCcccccccCeeEEEecCCCCCCeEEEEEeCCCc-
Q 012488 193 GEKRTLEVDAVIGADGANSRVAKSINAGD--YDYA-IAFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDH- 268 (462)
Q Consensus 193 ~~~~~~~adlvI~AdG~~S~vr~~l~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p~~~~- 268 (462)
.+++||+||+|||.+|.+|+.++... ..+. ..+...+..+.. .......++. +.++++++|..+.
T Consensus 152 ---~~~~a~~vI~AdG~~S~vr~~~g~~~~~~~~~~~~~~~~v~~~~~----~~~~~~~~~~----~~g~~~~~Pl~~~~ 220 (388)
T PRK07494 152 ---TTLSARLVVGADGRNSPVREAAGIGVRTWSYPQKALVLNFTHSRP----HQNVSTEFHT----EGGPFTQVPLPGRR 220 (388)
T ss_pred ---CEEEEeEEEEecCCCchhHHhcCCCceecCCCCEEEEEEEeccCC----CCCEEEEEeC----CCCcEEEEECCCCc
Confidence 68999999999999999999987652 1111 122222221110 1111111211 2345666676433
Q ss_pred eEEEEEecc------CCCcHHHHHHHHHHhhhcccCCCeEE-eEEeeecCCCCCCcccCCCEEEEccCCcCcccCCcccH
Q 012488 269 VAVGTGTVT------HKGDIKKFQLATRNRAKDKILGGKII-RVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGI 341 (462)
Q Consensus 269 ~~v~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~i~~~~~~~~~~~~v~liGDAAh~~~P~~G~G~ 341 (462)
.++...... ...+.+++.+.+.+.+.+.+...... ....+++......+|..+|++|+|||||.++|+.|||+
T Consensus 221 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~rv~LiGDAAH~~~P~~GqG~ 300 (388)
T PRK07494 221 SSLVWVVRPAEAERLLALSDAALSAAIEERMQSMLGKLTLEPGRQAWPLSGQVAHRFAAGRTALVGEAAHVFPPIGAQGL 300 (388)
T ss_pred EEEEEECCHHHHHHHHcCCHHHHHHHHHHHHhhhcCCeEEccCCcEeechHHHHHhhccCceEEEEhhhhcCCchhhccc
Confidence 222221111 01123455555555444444322211 23345665555567889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhhhhHHHHHHHhHhhhccCchhHH
Q 012488 342 YFAAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNPARE 404 (462)
Q Consensus 342 ~~a~~da~~la~~l~~a~~~~~~~~~~~~L~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (462)
|+||+||..|++.|.... ........|..|++.++.........++.+.+++.+..+...
T Consensus 301 n~~l~Da~~La~~L~~~~---~~~~~~~~L~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (388)
T PRK07494 301 NLGLRDVATLVEIVEDRP---EDPGSAAVLAAYDRARRPDILSRTASVDLLNRSLLSDFLPVQ 360 (388)
T ss_pred chhHHHHHHHHHHHHhcC---CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHH
Confidence 999999999999997632 112356789999999988888888888999999988765443
No 25
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=100.00 E-value=2.6e-33 Score=277.98 Aligned_cols=329 Identities=19% Similarity=0.217 Sum_probs=218.4
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCC-CCC-----cccccCc---cccccCCCChhhHh-c--ccceEEEEc
Q 012488 52 RVAVIGGGPAGGAAAETLAKNGVETFLIERKLDN-CKP-----CGGAIPL---CMVGEFDLPLDIID-R--KVTKMKMIS 119 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~-~~~-----~g~~i~~---~~l~~~g~~~~~~~-~--~~~~~~~~~ 119 (462)
||+||||||+||++|+.|+++|++|+||||.+.. ... .+..+++ +.|+++|+.+++.. . ....+.+++
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~ 80 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD 80 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence 7999999999999999999999999999999843 222 2334443 56788898877754 2 344555665
Q ss_pred CCCc-eEeccCc-ccCCCeEEeeehHHHHHHHHHHHHHCC-CEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCce
Q 012488 120 PSNV-AVDIGQT-LKPHEYIGMVRREVLDAYLRERAEKNG-ASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEK 195 (462)
Q Consensus 120 ~~~~-~~~~~~~-~~~~~~~~~v~r~~l~~~L~~~~~~~g-v~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 195 (462)
..+. .+.+... .....+.+.++|..|.+.|.+.+.+.| ++++.++ |+++.. .++.+.+.+.+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~---~~~~~~v~~~~g---------- 147 (385)
T TIGR01988 81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPR---HSDHVELTLDDG---------- 147 (385)
T ss_pred CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEe---cCCeeEEEECCC----------
Confidence 5432 2233211 111223457999999999999999988 9999987 988873 344577777776
Q ss_pred eEEEecEEEecCCCChHhhhhhcCCC--Cce-EEEEEEEEecCCcccccccCeeEEEecCCCCCCeEEEEEeCCCce-EE
Q 012488 196 RTLEVDAVIGADGANSRVAKSINAGD--YDY-AIAFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHV-AV 271 (462)
Q Consensus 196 ~~~~adlvI~AdG~~S~vr~~l~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p~~~~~-~v 271 (462)
.++++|+||+|||.+|.+|++++... ..+ ...+...+..+.. .+.....++. +.+++|++|..+.. .+
T Consensus 148 ~~~~~~~vi~adG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~----~~g~~~~~p~~~~~~~~ 219 (385)
T TIGR01988 148 QQLRARLLVGADGANSKVRQLAGIPTTGWDYGQSAVVANVKHERP----HQGTAWERFT----PTGPLALLPLPDNRSSL 219 (385)
T ss_pred CEEEeeEEEEeCCCCCHHHHHcCCCccccccCCeEEEEEEEecCC----CCCEEEEEec----CCCCEEEeECCCCCeEE
Confidence 67999999999999999999997542 112 1122222221111 1111112222 34467888877653 34
Q ss_pred EEEeccC------CCcHHHHHHHHHHhhhcccCCCe-EEeEEeeecCCCCCCcccCCCEEEEccCCcCcccCCcccHHHH
Q 012488 272 GTGTVTH------KGDIKKFQLATRNRAKDKILGGK-IIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYFA 344 (462)
Q Consensus 272 ~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~i~~~~~~~~~~~~v~liGDAAh~~~P~~G~G~~~a 344 (462)
....... ....+++.+.+.+.+...+.... ......+++.....++|..+|++|+|||||.++|++|||+++|
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~LiGDAah~~~P~~G~G~~~A 299 (385)
T TIGR01988 220 VWTLPPEEAERLLALSDEEFLAELQRAFGSRLGAITLVGERHAFPLSLTHAKRYVAPRLALIGDAAHTIHPLAGQGLNLG 299 (385)
T ss_pred EEECCHHHHHHHHcCCHHHHHHHHHHHHhhhcCceEeccCcceeechhhhhhheecCceEEEecccccCCccccchhhhh
Confidence 3332110 01223444444443333322111 1123344554455667889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhhhhHHHHHHHhHhhhccCch
Q 012488 345 AKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNP 401 (462)
Q Consensus 345 ~~da~~la~~l~~a~~~~~~~~~~~~L~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (462)
|+||..|++.|...+..+.+......|..|++.++..........+.+.+++....+
T Consensus 300 i~da~~La~~L~~~~~~~~~~~~~~~l~~y~~~r~~~~~~~~~~~~~~~~~~~~~~~ 356 (385)
T TIGR01988 300 LRDVAALAEVLEDARRRGEDIGSPRVLQRYERRRRFDNAAMLGATDGLNRLFSNDFP 356 (385)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 999999999998876544322347889999998888888888888888887776543
No 26
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=100.00 E-value=4.4e-33 Score=275.51 Aligned_cols=326 Identities=17% Similarity=0.229 Sum_probs=207.1
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCC-CCc---c---cccC---ccccccCCCChhhHhc---ccceEE
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNC-KPC---G---GAIP---LCMVGEFDLPLDIIDR---KVTKMK 116 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~-~~~---g---~~i~---~~~l~~~g~~~~~~~~---~~~~~~ 116 (462)
.+||+||||||+|+++|+.|+++|++|+|||+.+... ... + .+++ .++|+++|+++.+... .+..+.
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~ 82 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLE 82 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEE
Confidence 3799999999999999999999999999999875211 111 1 1343 4578999998887542 334444
Q ss_pred EEcCCCceEeccC-cccCCCeEEeeehHHHHHHHHHHHHHC-CCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCC
Q 012488 117 MISPSNVAVDIGQ-TLKPHEYIGMVRREVLDAYLRERAEKN-GASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVG 193 (462)
Q Consensus 117 ~~~~~~~~~~~~~-~~~~~~~~~~v~r~~l~~~L~~~~~~~-gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 193 (462)
.+........+.. ......+.+++.+..|...|.+.+.+. |++++.++ +++++. +++.+.|++.+|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~---~~~~~~v~~~~g-------- 151 (384)
T PRK08849 83 TWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEF---SAEGNRVTLESG-------- 151 (384)
T ss_pred EEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEE---cCCeEEEEECCC--------
Confidence 4443222222221 111222335677778999998887765 69999888 998873 344578888877
Q ss_pred ceeEEEecEEEecCCCChHhhhhhcCC--CCceEE-EEEEEEecCCcccccccCeeEEEecCCCCCCeEEEEEeCCCce-
Q 012488 194 EKRTLEVDAVIGADGANSRVAKSINAG--DYDYAI-AFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHV- 269 (462)
Q Consensus 194 ~~~~~~adlvI~AdG~~S~vr~~l~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p~~~~~- 269 (462)
.+++||+||+|||.+|.+|++++.. .+.|.. .....+..... ..+....++. +.+....+|..+..
T Consensus 152 --~~~~~~lvIgADG~~S~vR~~~gi~~~~~~~~~~~~v~~~~~~~~----~~~~~~~~~~----~~g~~~~~pl~~~~~ 221 (384)
T PRK08849 152 --AEIEAKWVIGADGANSQVRQLAGIGITAWDYRQHCMLINVETEQP----QQDITWQQFT----PSGPRSFLPLCGNQG 221 (384)
T ss_pred --CEEEeeEEEEecCCCchhHHhcCCCceeccCCCeEEEEEEEcCCC----CCCEEEEEeC----CCCCEEEeEcCCCce
Confidence 7999999999999999999998765 222211 11111111110 1111111111 11112223443221
Q ss_pred EEEEEecc------CCCcHHHHHHHHHHhhhcccCCCeEEeEEeeecCCCCCCcccCCCEEEEccCCcCcccCCcccHHH
Q 012488 270 AVGTGTVT------HKGDIKKFQLATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYF 343 (462)
Q Consensus 270 ~v~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~v~liGDAAh~~~P~~G~G~~~ 343 (462)
.+-..... .....+.+.+.+.+.+...+..-.+.....+++.....++|..+|++|+|||||.++|+.|||+|+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~grv~LlGDAAH~~~P~~GQG~n~ 301 (384)
T PRK08849 222 SLVWYDSPKRIKQLSAMNPEQLRSEILRHFPAELGEIKVLQHGSFPLTRRHAQQYVKNNCVLLGDAAHTINPLAGQGVNL 301 (384)
T ss_pred EEEEECCHHHHHHHHcCCHHHHHHHHHHHhhhhhCcEEeccceEeeccccccchhccCCEEEEEcccccCCCCccchHhH
Confidence 11111100 011233444444444444443334445556666666778899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhhhhHHHHHHHhHhhhccCch
Q 012488 344 AAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNP 401 (462)
Q Consensus 344 a~~da~~la~~l~~a~~~~~~~~~~~~L~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (462)
||+||..|++.|... +. ..+..|..|++.++.........++.+.++|.....
T Consensus 302 al~Da~~L~~~l~~~---~~--~~~~~L~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~~ 354 (384)
T PRK08849 302 GFKDVDVLLAETEKQ---GV--LNDASFARYERRRRPDNLLMQTGMDLFYKTFSNSLT 354 (384)
T ss_pred HHHHHHHHHHHHHhc---CC--CcHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCch
Confidence 999999999888531 22 356788888888888777777777888888877543
No 27
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=100.00 E-value=6.3e-33 Score=276.90 Aligned_cols=337 Identities=22% Similarity=0.332 Sum_probs=224.6
Q ss_pred CCCCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC-CCCC-CcccccCccccccCCCChhhHh-----ccc--ceEE
Q 012488 46 LTNRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL-DNCK-PCGGAIPLCMVGEFDLPLDIID-----RKV--TKMK 116 (462)
Q Consensus 46 ~~~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~-~~~~-~~g~~i~~~~l~~~g~~~~~~~-----~~~--~~~~ 116 (462)
|+...+||+||||||||+++|+.|+++|++|+|+||.+ +..+ .||+.+....++++. .++.. ..+ ..+.
T Consensus 1 m~~~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~--~~~~~~~~~~~~~~~~~~~ 78 (428)
T PRK10157 1 MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHII--PGFADSAPVERLITHEKLA 78 (428)
T ss_pred CCcccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHh--hhhhhcCcccceeeeeeEE
Confidence 44557999999999999999999999999999999987 3333 356666555554431 11111 101 1223
Q ss_pred EEcCCCc-eEeccC--cccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCC
Q 012488 117 MISPSNV-AVDIGQ--TLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGV 192 (462)
Q Consensus 117 ~~~~~~~-~~~~~~--~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~ 192 (462)
+....+. .+++.. ...+....+.+.|..|+++|.+.+++.|++++.++ |.++.. +++.+.+...++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~---~~g~v~~v~~~g------- 148 (428)
T PRK10157 79 FMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQ---RDGKVVGVEADG------- 148 (428)
T ss_pred EEcCCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEE---eCCEEEEEEcCC-------
Confidence 3333332 112211 11122234478999999999999999999999987 888863 233343333343
Q ss_pred CceeEEEecEEEecCCCChHhhhhhcCCC----CceEEEEEEEEecCCcccc------cccCeeEEEecCCCC-CCeEEE
Q 012488 193 GEKRTLEVDAVIGADGANSRVAKSINAGD----YDYAIAFQERVKIPDEKMV------YYENLAEMYVGDDVS-PDFYGW 261 (462)
Q Consensus 193 ~~~~~~~adlvI~AdG~~S~vr~~l~~~~----~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~-~~~~~w 261 (462)
.+++|++||+|||.+|.+++.++... ....+.+...+..+..... ..++...++.+.... .-+.+|
T Consensus 149 ---~~i~A~~VI~A~G~~s~l~~~lgl~~~~~~~~~av~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~g~~ggG~ 225 (428)
T PRK10157 149 ---DVIEAKTVILADGVNSILAEKLGMAKRVKPTDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPTDGLMGGGF 225 (428)
T ss_pred ---cEEECCEEEEEeCCCHHHHHHcCCCCCCCCcEEEEEEEEEEEcCHHHHHHhhccCCCCCeEEEEEECCCCCCcCcee
Confidence 57999999999999999999987652 1223444444444322111 012333445443211 112468
Q ss_pred EEeCCCceEEEEEecc-----CCCcHHHHHHHHHHh--hhcccCCCeEEeEEeeecCCC---CCCcccCCCEEEEccCCc
Q 012488 262 VFPKCDHVAVGTGTVT-----HKGDIKKFQLATRNR--AKDKILGGKIIRVEAHPIPEH---PRPRRLSGRVALVGDAAG 331 (462)
Q Consensus 262 ~~p~~~~~~v~~~~~~-----~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~i~~~---~~~~~~~~~v~liGDAAh 331 (462)
+++..+..++|+.... ......++.+.+... +...+..++..+...+.+|.. ..++.+.++++++||||+
T Consensus 226 ~~~~~~~~svG~~~~~~~~~~~~~~~~~~l~~~~~~p~v~~~~~~~~~~~~~~~~ip~~g~~~~~~~~~~g~llvGDAAg 305 (428)
T PRK10157 226 LYTNENTLSLGLVCGLHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAG 305 (428)
T ss_pred EEEcCCeEEEEEEEehHHhcccCCCHHHHHHHHHhCchHHHHhCCCeEHHHHhhHhhcCCcccCCceecCCeEEEecccc
Confidence 8888888888875421 223445555555432 334455556666666666653 345677899999999999
Q ss_pred Cccc--CCcccHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhhhhHHHHHHHhHhhhccC
Q 012488 332 YVTK--CSGEGIYFAAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRS 399 (462)
Q Consensus 332 ~~~P--~~G~G~~~a~~da~~la~~l~~a~~~~~~~~~~~~L~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (462)
+++| ++|+|+++||.++..+|+++.++++.++ .+...|..|.+.+++.+.+.++..+.+..++++.
T Consensus 306 ~v~p~g~~g~Gi~~A~~SG~lAAeai~~a~~~~~--~s~~~l~~Y~~~l~~~~~~~l~~~~~~~~~~~~~ 373 (428)
T PRK10157 306 MCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDD--FSKQKLAEYRQHLESGPLRDMRMYQKLPAFLDNP 373 (428)
T ss_pred cccccCceeeeHHHHHHHHHHHHHHHHHHHhcCC--cchhhHHHHHHHHHHhHHHHHHHHhccHHHhcCc
Confidence 9998 5999999999999999999999998776 6788999999999998777777777777766653
No 28
>PRK06753 hypothetical protein; Provisional
Probab=100.00 E-value=2.1e-33 Score=277.34 Aligned_cols=321 Identities=20% Similarity=0.192 Sum_probs=205.5
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCC-CCcccccCc---cccccCCCChhhHhc--ccceEEEEcCCCce
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNC-KPCGGAIPL---CMVGEFDLPLDIIDR--KVTKMKMISPSNVA 124 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~-~~~g~~i~~---~~l~~~g~~~~~~~~--~~~~~~~~~~~~~~ 124 (462)
+||+||||||+||++|+.|+++|++|+|+||++... ..+|..+++ +.|+.+|+.+.+... ....+.++++++..
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~~ 80 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGTL 80 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCCE
Confidence 489999999999999999999999999999998432 223334443 467788887766543 45566777776654
Q ss_pred EeccCcccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEE
Q 012488 125 VDIGQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAV 203 (462)
Q Consensus 125 ~~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlv 203 (462)
+..- ..........++|..|.+.|.+.+.. .++++++ |++++ .+++.+.|++.+| .++++|+|
T Consensus 81 ~~~~-~~~~~~~~~~i~R~~l~~~L~~~~~~--~~i~~~~~v~~i~---~~~~~v~v~~~~g----------~~~~~~~v 144 (373)
T PRK06753 81 LNKV-KLKSNTLNVTLHRQTLIDIIKSYVKE--DAIFTGKEVTKIE---NETDKVTIHFADG----------ESEAFDLC 144 (373)
T ss_pred Eeec-ccccCCccccccHHHHHHHHHHhCCC--ceEEECCEEEEEE---ecCCcEEEEECCC----------CEEecCEE
Confidence 3211 11122234478999999999988753 5788887 99887 2345688888776 68899999
Q ss_pred EecCCCChHhhhhhcCCCC---ceEEEEEEEEecCCcccccccCeeEEEecCCCCCCeEEEEEeCCCce-EEEEEeccC-
Q 012488 204 IGADGANSRVAKSINAGDY---DYAIAFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHV-AVGTGTVTH- 278 (462)
Q Consensus 204 I~AdG~~S~vr~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p~~~~~-~v~~~~~~~- 278 (462)
|+|||.+|.+|++++.... .....+...+ +........... .+++ +.+++|++|..+.. ........+
T Consensus 145 igadG~~S~vR~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~~~-~~~~----~~g~~~~~p~~~~~~~~~~~~~~~~ 217 (373)
T PRK06753 145 IGADGIHSKVRQSVNADSKVRYQGYTCFRGLI--DDIDLKLPDCAK-EYWG----TKGRFGIVPLLNNQAYWFITINAKE 217 (373)
T ss_pred EECCCcchHHHHHhCCCCCceEcceEEEEEEe--ccccccCccceE-EEEc----CCCEEEEEEcCCCeEEEEEEecccc
Confidence 9999999999999976521 1123333322 211111111222 2222 23467778876542 222111111
Q ss_pred -C-----CcHHHHHHHHHH---hhhcccCCCeEEeEEeeec-CCCCCCcccCCCEEEEccCCcCcccCCcccHHHHHHHH
Q 012488 279 -K-----GDIKKFQLATRN---RAKDKILGGKIIRVEAHPI-PEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYFAAKSG 348 (462)
Q Consensus 279 -~-----~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~i-~~~~~~~~~~~~v~liGDAAh~~~P~~G~G~~~a~~da 348 (462)
. ...+++.+.+.. .+.+.+...........++ ...+.++|..+|++|+|||||.++|+.|||+|+||+||
T Consensus 218 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LiGDAAh~~~P~~GqG~n~ai~Da 297 (373)
T PRK06753 218 RDPKYSSFGKPHLQAYFNHYPNEVREILDKQSETGILHHDIYDLKPLKSFVYGRIVLLGDAAHATTPNMGQGAGQAMEDA 297 (373)
T ss_pred CCcccccccHHHHHHHHhcCChHHHHHHHhCCcccceeeccccccccccccCCCEEEEecccccCCCCcCccHHHHHHHH
Confidence 0 011222222211 1222221111001111111 12345678899999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhhhhHHHHHHHhHhhhccCch
Q 012488 349 RMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNP 401 (462)
Q Consensus 349 ~~la~~l~~a~~~~~~~~~~~~L~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (462)
..|++.|.. . ..++.|..|++.++......++....+.+++....+
T Consensus 298 ~~L~~~L~~----~---~~~~al~~Y~~~r~~~~~~~~~~s~~~~~~~~~~~~ 343 (373)
T PRK06753 298 IVLANCLNA----Y---DFEKALQRYDKIRVKHTAKVIKRSRKIGKIAQIESK 343 (373)
T ss_pred HHHHHHhhh----c---cHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHhcCCc
Confidence 999999943 1 236788888888888888888888888887766554
No 29
>PTZ00367 squalene epoxidase; Provisional
Probab=100.00 E-value=7.1e-33 Score=281.76 Aligned_cols=387 Identities=14% Similarity=0.084 Sum_probs=224.6
Q ss_pred CCCCCCCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC--CCCCCcccccCc---cccccCCCChhhHhc--ccceE
Q 012488 43 SPKLTNRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL--DNCKPCGGAIPL---CMVGEFDLPLDIIDR--KVTKM 115 (462)
Q Consensus 43 ~~~~~~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~--~~~~~~g~~i~~---~~l~~~g~~~~~~~~--~~~~~ 115 (462)
+|..+..++||+||||||+|+++|+.|+++|++|+|+||.+ ...+..|..+++ +.|+++|+++.+... .+.++
T Consensus 26 ~~~~~~~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~~~~~~r~~G~~L~p~g~~~L~~LGL~d~l~~i~~~~~~~ 105 (567)
T PTZ00367 26 KPARTNYDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPDRIVGELLQPGGVNALKELGMEECAEGIGMPCFGY 105 (567)
T ss_pred CccccccCccEEEECCCHHHHHHHHHHHhcCCEEEEEccccccccchhhhhhcCHHHHHHHHHCCChhhHhhcCcceeee
Confidence 34445567999999999999999999999999999999986 223446666654 578899998766432 34566
Q ss_pred EEEcCCCceEeccCcccCCCeEEeeehHHHHHHHHHHH---HHCCCEEEcceeEEEEecCCCCC----CEEEEEeccCC-
Q 012488 116 KMISPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRERA---EKNGASVINGLFMKMDLPRNFEQ----PYVLYYTEYDG- 187 (462)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~~---~~~gv~i~~~~v~~~~~~~~~~~----~~~v~~~~~~~- 187 (462)
.+++.++....... ........+++..|.+.|++.+ ...+++++.++++++.. ++.. ...|++..++.
T Consensus 106 ~v~~~~G~~~~i~~--~~~~~g~~~~rg~~~~~Lr~~a~~~~~~~V~v~~~~v~~l~~--~~~~~~~~v~gV~~~~~~~~ 181 (567)
T PTZ00367 106 VVFDHKGKQVKLPY--GAGASGVSFHFGDFVQNLRSHVFHNCQDNVTMLEGTVNSLLE--EGPGFSERAYGVEYTEAEKY 181 (567)
T ss_pred EEEECCCCEEEecC--CCCCceeEeEHHHHHHHHHHHHHhhcCCCcEEEEeEEEEecc--ccCccCCeeEEEEEecCCcc
Confidence 66666554432211 1111223467888998898887 34578998777777752 2111 22343332210
Q ss_pred --------------ccCCCCceeEEEecEEEecCCCChHhhhhhcCC--CCceEEEEEEEEecCCcccccccCeeEEEec
Q 012488 188 --------------TKGGVGEKRTLEVDAVIGADGANSRVAKSINAG--DYDYAIAFQERVKIPDEKMVYYENLAEMYVG 251 (462)
Q Consensus 188 --------------~~~~~~~~~~~~adlvI~AdG~~S~vr~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (462)
.....+++.+++||+||+|||.+|.+|++++.. .+.+...|..... ..... ..++....+++
T Consensus 182 ~~~~~~f~~~~~~~~~~~~~~g~~~~AdLvVgADG~~S~vR~~l~~~~~~~~~~s~~~g~~~-~~~~l-p~~~~~~v~~g 259 (567)
T PTZ00367 182 DVPENPFREDPPSANPSATTVRKVATAPLVVMCDGGMSKFKSRYQHYTPASENHSHFVGLVL-KNVRL-PKEQHGTVFLG 259 (567)
T ss_pred cccccccccccccccccccccceEEEeCEEEECCCcchHHHHHccCCCCCcCcceEEEEEEE-ecccC-CCCCeeEEEEc
Confidence 000111246899999999999999999999754 2333333322211 11111 11333445544
Q ss_pred CCCCCCeEEEEEeCCCce-EEEEEeccC-CCc---HHHHH-HH--------HHHhhhcccCCCeEEeEEeeecCCCCCCc
Q 012488 252 DDVSPDFYGWVFPKCDHV-AVGTGTVTH-KGD---IKKFQ-LA--------TRNRAKDKILGGKIIRVEAHPIPEHPRPR 317 (462)
Q Consensus 252 ~~~~~~~~~w~~p~~~~~-~v~~~~~~~-~~~---~~~~~-~~--------~~~~~~~~l~~~~~~~~~~~~i~~~~~~~ 317 (462)
+.+.+|++|..++. .+.+..... .+. .+.+. +. +++.+...+... ......+....+..+
T Consensus 260 ----~~gpi~~yPl~~~~~r~lv~~~~~~~p~~~~~~~~l~~~~~p~l~~~l~~~f~~~l~~~--~~l~~~p~~~~p~~~ 333 (567)
T PTZ00367 260 ----KTGPILSYRLDDNELRVLVDYNKPTLPSLEEQSEWLIEDVAPHLPENMRESFIRASKDT--KRIRSMPNARYPPAF 333 (567)
T ss_pred ----CCceEEEEEcCCCeEEEEEEecCCcCCChHHHHHHHHHhhcccCcHHHHHHHHHhhccc--CCeEEeeHhhCCCcc
Confidence 34678899987653 333322211 111 12221 11 111111111111 123334444445556
Q ss_pred ccCCCEEEEccCCcCcccCCcccHHHHHHHHHHHHHHHHHHhh-cCCCCCC----hhHHH----HHHHHHHHhhhhHHHH
Q 012488 318 RLSGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIIEGSE-NGTRMID----EGDLR----KYLEKWDKTYWPTYKV 388 (462)
Q Consensus 318 ~~~~~v~liGDAAh~~~P~~G~G~~~a~~da~~la~~l~~a~~-~~~~~~~----~~~L~----~y~~~~~~~~~~~~~~ 388 (462)
+..+|++|||||||+++|++|||+|+||+||..|++.|..... .+.+..+ ...|+ .|+..++.........
T Consensus 334 ~~~~gvvLIGDAAH~mhP~~GQGmn~AleDA~~La~~L~~~~~~~~~d~~d~~~v~~aL~~~~~~Y~~~Rk~~a~~i~~l 413 (567)
T PTZ00367 334 PSIKGYVGIGDHANQRHPLTGGGMTCCFSDCIRLAKSLTGIKSLRSIDQNEMAEIEDAIQAAILSYARNRKTHASTINIL 413 (567)
T ss_pred CCCCCEEEEEcccCCCCCcccccHHHHHHHHHHHHHHHHhhhcccCCCchhHHHHHHHHHHhHHHHHHHhhhhHHHHHHH
Confidence 6788999999999999999999999999999999999976432 1111111 23344 4554444444445555
Q ss_pred HHHhHhhhccCchhHHHHHHHhccccccccChhhHhhhhhcCCCChhHHHHHHHHh
Q 012488 389 LDVLQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKRVVPGNPLEDLKLAVNTI 444 (462)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 444 (462)
.+.+.++|.. ..+++..++++...-.-.....+.+ .. +..+|+.....+|..+
T Consensus 414 s~aL~~lf~~-~~lr~~~~~y~~~gg~~~~~p~~ll-~g-~~~~p~~l~~h~~~v~ 466 (567)
T PTZ00367 414 SWALYSVFSS-PALRDACLDYFSLGGECVTGPMSLL-SG-LDPSPGGLLFHYFSVA 466 (567)
T ss_pred HHHHHHHhCh-HHHHHHHHHHHhcCCccccccHHHH-cC-CCCCcHHHHHHHHHHH
Confidence 5666777766 5688888888865311111111222 22 2445666555555443
No 30
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=100.00 E-value=1.3e-32 Score=285.44 Aligned_cols=342 Identities=15% Similarity=0.160 Sum_probs=218.6
Q ss_pred CCCccEEEECCchHHHHHHHHHHHC-CCcEEEEcCCCCC-CCCcccccC---ccccccCCCChhhHhcc--cceEEEEcC
Q 012488 48 NRNLRVAVIGGGPAGGAAAETLAKN-GVETFLIERKLDN-CKPCGGAIP---LCMVGEFDLPLDIIDRK--VTKMKMISP 120 (462)
Q Consensus 48 ~~~~dVvIVGgG~aGl~~A~~L~~~-g~~v~v~E~~~~~-~~~~g~~i~---~~~l~~~g~~~~~~~~~--~~~~~~~~~ 120 (462)
+.++||+||||||+||++|+.|+++ |++|+|||+.+.. ....+.+++ .++|+++|+.+.+.... +..+.++.+
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~ 109 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKP 109 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcC
Confidence 3478999999999999999999995 9999999999732 222334554 45788999998887653 334556654
Q ss_pred CCc---eEe-------ccCcccCCCeEEeeehHHHHHHHHHHHHHCCC--EEEcce-eEEEEecCCCCCCEEEEEeccCC
Q 012488 121 SNV---AVD-------IGQTLKPHEYIGMVRREVLDAYLRERAEKNGA--SVINGL-FMKMDLPRNFEQPYVLYYTEYDG 187 (462)
Q Consensus 121 ~~~---~~~-------~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv--~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~ 187 (462)
.+. .+. ........++ ..++|..++++|.+.+.+.|. ++.+++ +++++...+.+..++|++.+.+
T Consensus 110 ~~~~~~~i~r~~~~~~~~~~~~~~~~-~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~- 187 (634)
T PRK08294 110 DPADPSTIVRTGRVQDTEDGLSEFPH-VIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTD- 187 (634)
T ss_pred CCccccceeccccccccCCCCCCCcc-EeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECC-
Confidence 321 110 0001112222 468999999999999988774 677887 9988743222345888887531
Q ss_pred ccCCCCceeEEEecEEEecCCCChHhhhhhcCCCC--ceEEEEEE-EEecCCcccccccCeeEEEecCCCCCCeEEEEEe
Q 012488 188 TKGGVGEKRTLEVDAVIGADGANSRVAKSINAGDY--DYAIAFQE-RVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFP 264 (462)
Q Consensus 188 ~~~~~~~~~~~~adlvI~AdG~~S~vr~~l~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p 264 (462)
...+|+..+++||+||+|||.+|.||+++++... .+...|.. .+..... +++.......+ ..+.+.+.++|
T Consensus 188 -~~~~g~~~tv~A~~lVGaDGa~S~VR~~lgi~~~G~~~~~~~~v~dv~~~~~----~p~~~~~~~~~-~~~~g~~~~~P 261 (634)
T PRK08294 188 -GEHEGEEETVRAKYVVGCDGARSRVRKAIGRELRGDSANHAWGVMDVLAVTD----FPDIRLKCAIQ-SASEGSILLIP 261 (634)
T ss_pred -CCCCCceEEEEeCEEEECCCCchHHHHhcCCCccCCcccceEEEEEEEEccC----CCCcceEEEEe-cCCCceEEEEE
Confidence 0012445789999999999999999999987521 11111110 1111110 12211110000 12234555567
Q ss_pred CCCce--EEEEEe--cc-------CCCcHHHHHHHHHHhhhcc-cCCCeEEeEEeeecCCCCCCcc----------cCCC
Q 012488 265 KCDHV--AVGTGT--VT-------HKGDIKKFQLATRNRAKDK-ILGGKIIRVEAHPIPEHPRPRR----------LSGR 322 (462)
Q Consensus 265 ~~~~~--~v~~~~--~~-------~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~i~~~~~~~~----------~~~~ 322 (462)
..+.. .+.... .. .....+++.+.+.+.+.+. +.-..+.++..+.+..+...++ ..+|
T Consensus 262 ~~~g~~~r~~~~~~~~~~~~~~~~~~~t~e~l~~~~~~~~~p~~~~~~~v~w~s~y~i~~r~a~~f~~~~~~~~~~r~gR 341 (634)
T PRK08294 262 REGGYLVRLYVDLGEVPPDERVAVRNTTVEEVIAKAQRILHPYTLDVKEVAWWSVYEVGQRLTDRFDDVPAEEAGTRLPR 341 (634)
T ss_pred CCCCeEEEEEEecCcCCCccccccccCCHHHHHHHHHHhcCCCCCceeEEeEEecccccceehhhcccccccccccccCC
Confidence 65442 221110 00 1123455666555544332 2113344555555555444444 3589
Q ss_pred EEEEccCCcCcccCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhhhhHHHHHHHhHhhhccCc
Q 012488 323 VALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSN 400 (462)
Q Consensus 323 v~liGDAAh~~~P~~G~G~~~a~~da~~la~~l~~a~~~~~~~~~~~~L~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (462)
|+|+|||||.++|..|||+|++|+||..|++.|...++.. .....|..|+.+++......+.....+.++|...+
T Consensus 342 VfLaGDAAH~hsP~~GQGmN~giqDA~nLawkLa~vl~g~---a~~~lL~tYe~ERrp~a~~li~~~~~~~~l~~~~~ 416 (634)
T PRK08294 342 VFIAGDACHTHSAKAGQGMNVSMQDGFNLGWKLAAVLSGR---SPPELLHTYSAERQAIAQELIDFDREWSTMMAAPP 416 (634)
T ss_pred EEEEecCccCCCCccccchhhHHHHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999999999877543 46788999999888888888888888888887643
No 31
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=100.00 E-value=1.5e-32 Score=283.54 Aligned_cols=335 Identities=16% Similarity=0.108 Sum_probs=213.0
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCC-CCcccccC---ccccccCCCChhhHhcccc--eEEEEcCC
Q 012488 48 NRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNC-KPCGGAIP---LCMVGEFDLPLDIIDRKVT--KMKMISPS 121 (462)
Q Consensus 48 ~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~-~~~g~~i~---~~~l~~~g~~~~~~~~~~~--~~~~~~~~ 121 (462)
++++||+||||||+||++|+.|+++|++|+||||.+... ...+.+++ .+.|+++|+.+.+...... ...++..+
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~ 100 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRD 100 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCC
Confidence 467899999999999999999999999999999997332 22333443 4567889998887665322 22223222
Q ss_pred CceEeccCc--c-cCCCeEEeeehHHHHHHHHHHHHHC-CCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCcee
Q 012488 122 NVAVDIGQT--L-KPHEYIGMVRREVLDAYLRERAEKN-GASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKR 196 (462)
Q Consensus 122 ~~~~~~~~~--~-~~~~~~~~v~r~~l~~~L~~~~~~~-gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 196 (462)
+....+... . ........+.|..++++|.+.+.+. |+++++++ +++++. +++.+.+++.+. +...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~---~~~~v~v~~~~~-------~g~~ 170 (547)
T PRK08132 101 EEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQ---HDDGVTLTVETP-------DGPY 170 (547)
T ss_pred CeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEE---cCCEEEEEEECC-------CCcE
Confidence 222222110 0 1112233578899999999999886 69999888 888873 334566666543 1124
Q ss_pred EEEecEEEecCCCChHhhhhhcCCCCceE--EEE-EEEEecCCcccccccCeeEEEecCCCCCCeEEEEEeCCCceE-EE
Q 012488 197 TLEVDAVIGADGANSRVAKSINAGDYDYA--IAF-QERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHVA-VG 272 (462)
Q Consensus 197 ~~~adlvI~AdG~~S~vr~~l~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p~~~~~~-v~ 272 (462)
+++||+||+|||.+|.+|+.++....... ..+ ...+..... .+.....+++....++.+.+++|..+..+ +.
T Consensus 171 ~i~ad~vVgADG~~S~vR~~lg~~~~g~~~~~~~~~~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (547)
T PRK08132 171 TLEADWVIACDGARSPLREMLGLEFEGRTFEDRFLIADVKMKAD----FPTERWFWFDPPFHPGQSVLLHRQPDNVWRID 246 (547)
T ss_pred EEEeCEEEECCCCCcHHHHHcCCCCCCccccceEEEEEEEecCC----CCCeeeEEEeccCCCCcEEEEEeCCCCeEEEE
Confidence 79999999999999999999987522211 111 111111111 12222344444344555677666554432 22
Q ss_pred EEeccC-----CCcHHHHHHHHHHhhhcccCCCeEEeEEeeecCCCCCCcccCCCEEEEccCCcCcccCCcccHHHHHHH
Q 012488 273 TGTVTH-----KGDIKKFQLATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYFAAKS 347 (462)
Q Consensus 273 ~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~v~liGDAAh~~~P~~G~G~~~a~~d 347 (462)
...... ....+.+.+.+.+.+... ...++.....+.+......+|..|||+|+|||||.++|+.|||+|+||+|
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~~gRV~L~GDAAH~~~P~~GqG~n~gi~D 325 (547)
T PRK08132 247 FQLGWDADPEAEKKPENVIPRVRALLGED-VPFELEWVSVYTFQCRRMDRFRHGRVLFAGDAAHQVSPFGARGANSGIQD 325 (547)
T ss_pred EecCCCCCchhhcCHHHHHHHHHHHcCCC-CCeeEEEEEeeeeeeeeecccccccEEEEecccccCCCcccccccchHHH
Confidence 211111 112234444444433221 11234444455566667788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhhhhHHHHHHHhHhhhccCc
Q 012488 348 GRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSN 400 (462)
Q Consensus 348 a~~la~~l~~a~~~~~~~~~~~~L~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (462)
|..|++.|...++.. ..+..|..|+++++.......+....+.+++....
T Consensus 326 A~~LawkLa~vl~g~---~~~~lL~~Ye~eR~p~~~~~~~~s~~~~~~~~~~~ 375 (547)
T PRK08132 326 ADNLAWKLALVLRGR---APDSLLDSYASEREFAADENIRNSTRSTDFITPKS 375 (547)
T ss_pred HHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCC
Confidence 999999998876543 45778888888887776666665555655555433
No 32
>PRK06996 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-32 Score=273.60 Aligned_cols=334 Identities=16% Similarity=0.143 Sum_probs=212.3
Q ss_pred CCCCCCCCccEEEECCchHHHHHHHHHHHCC----CcEEEEcCCCCCC---CCcccccC---ccccccCCCChhhHhccc
Q 012488 43 SPKLTNRNLRVAVIGGGPAGGAAAETLAKNG----VETFLIERKLDNC---KPCGGAIP---LCMVGEFDLPLDIIDRKV 112 (462)
Q Consensus 43 ~~~~~~~~~dVvIVGgG~aGl~~A~~L~~~g----~~v~v~E~~~~~~---~~~g~~i~---~~~l~~~g~~~~~~~~~~ 112 (462)
..+|.++.+||+||||||+|+++|+.|+++| ++|+|+|+.+... ..++..++ .+.|+++|+++.. ...+
T Consensus 4 ~~~~~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~-~~~~ 82 (398)
T PRK06996 4 AASMAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPAD-ATPI 82 (398)
T ss_pred hhhccCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhc-CCcc
Confidence 3447888999999999999999999999987 4799999986221 12344453 3468889987762 2334
Q ss_pred ceEEEEcCCCc-eEecc-CcccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCcc
Q 012488 113 TKMKMISPSNV-AVDIG-QTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTK 189 (462)
Q Consensus 113 ~~~~~~~~~~~-~~~~~-~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~ 189 (462)
..+.+...... ...+. .........+.++|..|++.|.+.+++.|++++.++ +.+++ ..++.+++++.+++
T Consensus 83 ~~~~~~~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~---~~~~~v~v~~~~~~--- 156 (398)
T PRK06996 83 EHIHVSQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPA---QDADGVTLALGTPQ--- 156 (398)
T ss_pred cEEEEecCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeee---ecCCeEEEEECCCC---
Confidence 45555432211 12221 111112234589999999999999999999999887 88876 23445788776541
Q ss_pred CCCCceeEEEecEEEecCCC-ChHhhhhhcCCC--Cce-EEEEEEEEecCCcccccccCeeEEEecCCCCCCeEEEEEeC
Q 012488 190 GGVGEKRTLEVDAVIGADGA-NSRVAKSINAGD--YDY-AIAFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPK 265 (462)
Q Consensus 190 ~~~~~~~~~~adlvI~AdG~-~S~vr~~l~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p~ 265 (462)
+ +.+++||+||+|||. +|.+|+.++... ..| ...+...+..... .++.....+. +.+++-.+|.
T Consensus 157 ---g-~~~i~a~lvIgADG~~~s~~r~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~~~~~~~----~~G~~~~lp~ 224 (398)
T PRK06996 157 ---G-ARTLRARIAVQAEGGLFHDQKADAGDSARRRDYGQTAIVGTVTVSAP----RPGWAWERFT----HEGPLALLPL 224 (398)
T ss_pred ---c-ceEEeeeEEEECCCCCchHHHHHcCCCceeeecCCeEEEEEEEccCC----CCCEEEEEec----CCCCeEEeEC
Confidence 2 257999999999997 577888877652 111 1122222222111 1111111111 2233444455
Q ss_pred CCc----eEEEEEecc------CCCcHHHHHHHHHHhhhcccCCCe-EEeEEeeecCCCCCCcccCCCEEEEccCCcCcc
Q 012488 266 CDH----VAVGTGTVT------HKGDIKKFQLATRNRAKDKILGGK-IIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVT 334 (462)
Q Consensus 266 ~~~----~~v~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~i~~~~~~~~~~~~v~liGDAAh~~~ 334 (462)
.+. ..+...... .....+.+.+.+.+.+...+..-. ..+...+++......+|..+||+|+|||||.++
T Consensus 225 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~grv~LiGDAAH~~~ 304 (398)
T PRK06996 225 GGPRQADYALVWCCAPDEAARRAALPDDAFLAELGAAFGTRMGRFTRIAGRHAFPLGLNAARTLVNGRIAAVGNAAQTLH 304 (398)
T ss_pred CCCCCCcEEEEEECCHHHHHHHHcCCHHHHHHHHHHHhccccCceEEecceEEEeeecccccceecCCEEEEEhhhccCC
Confidence 432 222111110 011223444444444444332111 112234666666677899999999999999999
Q ss_pred cCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhhhhHHHHHHHhHhhhccCch
Q 012488 335 KCSGEGIYFAAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNP 401 (462)
Q Consensus 335 P~~G~G~~~a~~da~~la~~l~~a~~~~~~~~~~~~L~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (462)
|+.|||+|+||+||..|++.|.. .+ .....|..|++.++..........+.+.+++....+
T Consensus 305 P~~GQG~n~ai~Da~~La~~L~~---~~---~~~~~L~~Y~~~R~~~~~~~~~~s~~l~~~~~~~~~ 365 (398)
T PRK06996 305 PVAGQGLNLGLRDAHTLADALSD---HG---ATPLALATFAARRALDRRVTIGATDLLPRLFTVDSR 365 (398)
T ss_pred cccchhHHHHHHHHHHHHHHHHh---cC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 99999999999999999999964 12 245679899988888887788888888888877654
No 33
>PRK07190 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-32 Score=278.37 Aligned_cols=328 Identities=15% Similarity=0.133 Sum_probs=214.6
Q ss_pred CCCCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCC-CCcccccC---ccccccCCCChhhHhcc--cceEEEEc
Q 012488 46 LTNRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNC-KPCGGAIP---LCMVGEFDLPLDIIDRK--VTKMKMIS 119 (462)
Q Consensus 46 ~~~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~-~~~g~~i~---~~~l~~~g~~~~~~~~~--~~~~~~~~ 119 (462)
|++..+||+||||||+||++|+.|+++|++|+|+||.+... ...+.++. .++|+.+|+.+.+.... .....++.
T Consensus 1 m~~~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~ 80 (487)
T PRK07190 1 MSTQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWA 80 (487)
T ss_pred CCCccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEec
Confidence 45667899999999999999999999999999999998332 22222343 34678888887775532 22223333
Q ss_pred CCCceEec----cCcc--cCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCC
Q 012488 120 PSNVAVDI----GQTL--KPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGV 192 (462)
Q Consensus 120 ~~~~~~~~----~~~~--~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~ 192 (462)
. +..+.. .... ....+...+.+..+++.|.+.+++.|++++.++ |+++.. + ++.+.+.+.++
T Consensus 81 ~-g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~--~-~~~v~v~~~~g------- 149 (487)
T PRK07190 81 N-GKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIEL--N-QAGCLTTLSNG------- 149 (487)
T ss_pred C-CceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEE--c-CCeeEEEECCC-------
Confidence 2 221110 0011 112234568899999999999999999999998 999873 3 33466666554
Q ss_pred CceeEEEecEEEecCCCChHhhhhhcCCCC--ceEEEEE-EEEecCCcccccccCeeEEEecCCCCCCeEEEEEeCCCce
Q 012488 193 GEKRTLEVDAVIGADGANSRVAKSINAGDY--DYAIAFQ-ERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHV 269 (462)
Q Consensus 193 ~~~~~~~adlvI~AdG~~S~vr~~l~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p~~~~~ 269 (462)
.+++|++||+|||.+|.+|+++++... .+...|. ..+.+..+ ....+... .+.. +.+.++++|..+..
T Consensus 150 ---~~v~a~~vVgADG~~S~vR~~lgi~f~g~~~~~~~~~~d~~~~~~-~~~~~~~~-~~~~----~~g~~~~~p~~~~~ 220 (487)
T PRK07190 150 ---ERIQSRYVIGADGSRSFVRNHFNVPFEIIRPQIIWAVIDGVIDTD-FPKVPEII-VFQA----ETSDVAWIPREGEI 220 (487)
T ss_pred ---cEEEeCEEEECCCCCHHHHHHcCCCccccccceeEEEEEEEEccC-CCCCcceE-EEEc----CCCCEEEEECCCCE
Confidence 589999999999999999999987622 1111111 11122111 00001111 1211 22344456665443
Q ss_pred E-EEEEeccCCCcHHHHHHHHHHhhh-cccCCCeEEeEEeeecCCCCCCccc-CCCEEEEccCCcCcccCCcccHHHHHH
Q 012488 270 A-VGTGTVTHKGDIKKFQLATRNRAK-DKILGGKIIRVEAHPIPEHPRPRRL-SGRVALVGDAAGYVTKCSGEGIYFAAK 346 (462)
Q Consensus 270 ~-v~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~i~~~~~~~~~-~~~v~liGDAAh~~~P~~G~G~~~a~~ 346 (462)
. +-..........+++.+.+...+. ..+.-..+.+...+++..+...+|. .|||+|+|||||.++|..|||+|++|+
T Consensus 221 ~r~~~~~~~~~~t~~~~~~~l~~~~~~~~~~~~~~~w~s~~~~~~r~a~~~r~~gRV~LaGDAAH~h~P~gGQGmN~giq 300 (487)
T PRK07190 221 DRFYVRMDTKDFTLEQAIAKINHAMQPHRLGFKEIVWFSQFSVKESVAEHFFIQDRIFLAGDACHIHSVNGGQGLNTGLA 300 (487)
T ss_pred EEEEEEcCCCCCCHHHHHHHHHHhcCCCCCceEEEEEEEEeeeCcEehhhcCcCCcEEEEecccccCCCccccchhhhHH
Confidence 2 111111122334555555555332 2233345556677888888888886 799999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhhhhHHHHHHHhHhhh
Q 012488 347 SGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVF 396 (462)
Q Consensus 347 da~~la~~l~~a~~~~~~~~~~~~L~~y~~~~~~~~~~~~~~~~~~~~~~ 396 (462)
||..|++.|...++.. ..+..|..|+.+++......+...+.+.+++
T Consensus 301 DA~nL~wkLa~v~~g~---a~~~lLdtY~~eR~p~a~~vl~~t~~~~~~~ 347 (487)
T PRK07190 301 DAFNLIWKLNMVIHHG---ASPELLQSYEAERKPVAQGVIETSGELVRST 347 (487)
T ss_pred HHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999998776543 4578888888888887777777776665544
No 34
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=100.00 E-value=1.1e-32 Score=272.72 Aligned_cols=329 Identities=16% Similarity=0.212 Sum_probs=197.1
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCC---CCCcccccC---ccccccCCCChhhHhcc--cceEEEEcC
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDN---CKPCGGAIP---LCMVGEFDLPLDIIDRK--VTKMKMISP 120 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~---~~~~g~~i~---~~~l~~~g~~~~~~~~~--~~~~~~~~~ 120 (462)
|++||+||||||+|+++|+.|+++|++|+||||.+.. ...+++.++ .++|+++|+.+++.... ...+.+...
T Consensus 1 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 80 (390)
T TIGR02360 1 MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFD 80 (390)
T ss_pred CCceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeC
Confidence 4579999999999999999999999999999999842 122344454 35789999988886543 334444432
Q ss_pred CCc-eEeccCcccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEe-ccCCccCCCCceeE
Q 012488 121 SNV-AVDIGQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYT-EYDGTKGGVGEKRT 197 (462)
Q Consensus 121 ~~~-~~~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~ 197 (462)
... .+++.... .........+..+...|.+.+.+.|+.++++. ++.+. +.+++.+.|++. +| +..+
T Consensus 81 ~~~~~~~~~~~~-~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~--~~~~~~~~V~~~~~g--------~~~~ 149 (390)
T TIGR02360 81 GQRFRIDLKALT-GGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLH--DLAGDRPYVTFERDG--------ERHR 149 (390)
T ss_pred CEEEEEeccccC-CCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEE--ecCCCccEEEEEECC--------eEEE
Confidence 211 12222111 11112234567888999999888898888876 66664 223345667775 54 2347
Q ss_pred EEecEEEecCCCChHhhhhhcCCCCc-eE----EEEEEEEecCCcccccccCeeEEEecCCCCCCeEEEEEeC-CCceEE
Q 012488 198 LEVDAVIGADGANSRVAKSINAGDYD-YA----IAFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPK-CDHVAV 271 (462)
Q Consensus 198 ~~adlvI~AdG~~S~vr~~l~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p~-~~~~~v 271 (462)
+++|+||+|||.+|.+|++++..... +. ..|...+ +..... .. ..++.+.. .++.+.... .+....
T Consensus 150 i~adlvIGADG~~S~VR~~l~~~~~~~~~~~~~~~~~~l~--~~~~~~--~~-~~~~~~~~---~~~~~~~~~~~~~~~~ 221 (390)
T TIGR02360 150 LDCDFIAGCDGFHGVSRASIPAEVLKEFERVYPFGWLGIL--SETPPV--SH-ELIYSNHE---RGFALCSMRSATRSRY 221 (390)
T ss_pred EEeCEEEECCCCchhhHHhcCcccceeeeccCCcceEEEe--cCCCCC--CC-ceEEEeCC---CceEEEeccCCCcceE
Confidence 99999999999999999998654211 11 1222111 111100 01 11222211 112222111 111100
Q ss_pred EEEeccCC--C--cHHHHHHHHHHhhhc----ccCCCeEEeEEeeecCCCCCCcccCCCEEEEccCCcCcccCCcccHHH
Q 012488 272 GTGTVTHK--G--DIKKFQLATRNRAKD----KILGGKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYF 343 (462)
Q Consensus 272 ~~~~~~~~--~--~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~i~~~~~~~~~~~~v~liGDAAh~~~P~~G~G~~~ 343 (462)
-....... . ..+.+.+.+.+.+.+ .+...+.......++......+|..||++|+|||||.++|+.|||+|+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~grvvLvGDAAH~~~P~~GQG~n~ 301 (390)
T TIGR02360 222 YVQVPLTDKVEDWSDDRFWAELKRRLPSEAAERLVTGPSIEKSIAPLRSFVCEPMQYGRLFLAGDAAHIVPPTGAKGLNL 301 (390)
T ss_pred EEEcCCCCChhhCChhHHHHHHHHhcCchhhhhhccCCccceeeeeHHhhccccCccCCEEEEEccccCCCCCcCCchhH
Confidence 00000000 0 112233333332221 111111111223344445566788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhhhhHHHHHHHhHhhhccCc
Q 012488 344 AAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSN 400 (462)
Q Consensus 344 a~~da~~la~~l~~a~~~~~~~~~~~~L~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (462)
||+||..|++.|...... .....|..|++.+........+..+.+.+++++.+
T Consensus 302 aieDA~~La~~L~~~~~~----~~~~al~~Y~~~R~~r~~~~~~~s~~~~~~~~~~~ 354 (390)
T TIGR02360 302 AASDVHYLYEALLEHYQE----GSSAGIEGYSARALARVWKAERFSWWMTSLLHRFP 354 (390)
T ss_pred HHHHHHHHHHHHHHHhcc----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999765322 24578888888888777777777778888877655
No 35
>PRK06184 hypothetical protein; Provisional
Probab=100.00 E-value=9.2e-33 Score=282.31 Aligned_cols=326 Identities=18% Similarity=0.147 Sum_probs=205.7
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCC-CCCcccccC---ccccccCCCChhhHhcc--cceEEEEcCCCc
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDN-CKPCGGAIP---LCMVGEFDLPLDIIDRK--VTKMKMISPSNV 123 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~-~~~~g~~i~---~~~l~~~g~~~~~~~~~--~~~~~~~~~~~~ 123 (462)
++||+||||||+||++|+.|+++|++|+||||.+.. ...++.+++ .+.|+++|+.+++.... .....++...+.
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~ 82 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGS 82 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCce
Confidence 479999999999999999999999999999998733 344666665 45788999988877643 333444443332
Q ss_pred eE--eccC-----cccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCce
Q 012488 124 AV--DIGQ-----TLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEK 195 (462)
Q Consensus 124 ~~--~~~~-----~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 195 (462)
.. .+.. ...+.....++.|..+++.|.+.+.+.|+++++++ +++++. +++.+++++.+. ++.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~---~~~~v~v~~~~~-------~~~ 152 (502)
T PRK06184 83 VAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQ---DADGVTARVAGP-------AGE 152 (502)
T ss_pred EEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEE---cCCcEEEEEEeC-------CCe
Confidence 21 1110 01112233478899999999999999999999997 988872 334577776432 123
Q ss_pred eEEEecEEEecCCCChHhhhhhcCCCC--ceE--EEEEEEEecCCcccccccCeeEEEecCCCCCCeEEEEEeCCCc--e
Q 012488 196 RTLEVDAVIGADGANSRVAKSINAGDY--DYA--IAFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDH--V 269 (462)
Q Consensus 196 ~~~~adlvI~AdG~~S~vr~~l~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p~~~~--~ 269 (462)
.+++||+||+|||.+|.+|++++.... .+. ..+...+.... ..+.....+.... .+.+.++|..+. .
T Consensus 153 ~~i~a~~vVgADG~~S~vR~~lgi~~~g~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~---~~~~~~~p~~~~~~~ 225 (502)
T PRK06184 153 ETVRARYLVGADGGRSFVRKALGIGFPGETLGIDRMLVADVSLTG----LDRDAWHQWPDGD---MGMIALCPLPGTDLF 225 (502)
T ss_pred EEEEeCEEEECCCCchHHHHhCCCCcccCcCCCceEEEEEEEeec----CCCcceEEccCCC---CcEEEEEEccCCCeE
Confidence 689999999999999999999986521 111 11111111111 1111122222211 123344454322 2
Q ss_pred EEEEEecc---CCCcHHHHHHHHHHhhhcc-cCCCeEEeEEeeecCCCCCCcccCCCEEEEccCCcCcccCCcccHHHHH
Q 012488 270 AVGTGTVT---HKGDIKKFQLATRNRAKDK-ILGGKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYFAA 345 (462)
Q Consensus 270 ~v~~~~~~---~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~i~~~~~~~~~~~~v~liGDAAh~~~P~~G~G~~~a~ 345 (462)
.+...... .....+.+.+.+....... +.-..+.+...+.+.....++|..|||+|+|||||.++|+.|||+|+||
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~gRv~L~GDAAH~~~P~~GqG~n~gi 305 (502)
T PRK06184 226 QIQAPLPPGGEPDLSADGLTALLAERTGRTDIRLHSVTWASAFRMNARLADRYRVGRVFLAGDAAHVHPPAGGQGLNTSV 305 (502)
T ss_pred EEEEEcCCCccCCCCHHHHHHHHHHhcCCCCcceeeeeeeeccccceeEhhhhcCCcEEEeccccccCCCcccccccchH
Confidence 22221111 1122344555444433211 1101122233344444456778899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhhhhHHHHHHHhHhhh
Q 012488 346 KSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVF 396 (462)
Q Consensus 346 ~da~~la~~l~~a~~~~~~~~~~~~L~~y~~~~~~~~~~~~~~~~~~~~~~ 396 (462)
+||..|++.|...++. ..+..|..|++.++......+.....+.+.+
T Consensus 306 ~DA~~LawkLa~vl~g----~~~~lL~~Ye~eR~p~~~~~~~~s~~~~~~~ 352 (502)
T PRK06184 306 QDAYNLGWKLAAVLAG----APEALLDTYEEERRPVAAAVLGLSTELLDAI 352 (502)
T ss_pred HHHHHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999877654 2456788888888877766666555555444
No 36
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=100.00 E-value=1.8e-32 Score=271.53 Aligned_cols=326 Identities=17% Similarity=0.167 Sum_probs=209.4
Q ss_pred cEEEECCchHHHHHHHHHHHCC-CcEEEEcCCCCC-CCC----cccccC---ccccccCCCChhhHhc--ccceEEEEcC
Q 012488 52 RVAVIGGGPAGGAAAETLAKNG-VETFLIERKLDN-CKP----CGGAIP---LCMVGEFDLPLDIIDR--KVTKMKMISP 120 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g-~~v~v~E~~~~~-~~~----~g~~i~---~~~l~~~g~~~~~~~~--~~~~~~~~~~ 120 (462)
||+||||||+|+++|+.|+++| ++|+|+||.+.. ... ++..++ .+.|+++|+.+.+... ....+.+...
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 80 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ 80 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence 7999999999999999999999 999999998732 221 233444 3578899998776543 2334444432
Q ss_pred CC-ceEeccC-cccCCCeEEeeehHHHHHHHHHHHHHC-CCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCcee
Q 012488 121 SN-VAVDIGQ-TLKPHEYIGMVRREVLDAYLRERAEKN-GASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKR 196 (462)
Q Consensus 121 ~~-~~~~~~~-~~~~~~~~~~v~r~~l~~~L~~~~~~~-gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 196 (462)
.. ....+.. ........+.++|..|.+.|.+.+.+. |+++++++ |+++.. .++.+.+++.++ .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~---~~~~~~v~~~~g----------~ 147 (382)
T TIGR01984 81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIR---NQDYVRVTLDNG----------Q 147 (382)
T ss_pred CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEE---cCCeEEEEECCC----------C
Confidence 21 1122211 111112235789999999999999884 99999877 988872 234577877665 5
Q ss_pred EEEecEEEecCCCChHhhhhhcCCC--Cce-EEEEEEEEecCCcccccccCeeEEEecCCCCCCeEEEEEeCCCc--eEE
Q 012488 197 TLEVDAVIGADGANSRVAKSINAGD--YDY-AIAFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDH--VAV 271 (462)
Q Consensus 197 ~~~adlvI~AdG~~S~vr~~l~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p~~~~--~~v 271 (462)
+++||+||+|||.+|.+|+.++... ..+ ...+...+...... ......++. +.++++++|..+. ..+
T Consensus 148 ~~~ad~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~----~~g~~~~~p~~~~~~~~~ 219 (382)
T TIGR01984 148 QLRAKLLIAADGANSKVRELLSIPTEEHDYNQTALIANIRHEQPH----QGCAFERFT----PHGPLALLPLKDNYRSSL 219 (382)
T ss_pred EEEeeEEEEecCCChHHHHHcCCCCcccccCCEEEEEEEEecCCC----CCEEEEeeC----CCCCeEECcCCCCCCEEE
Confidence 8999999999999999999997652 111 12222222221111 111111111 2234566776554 222
Q ss_pred EEEeccC------CCcHHHHHHHHHHhhhcccCCCe-EEeEEeeecCCCCCCcccCCCEEEEccCCcCcccCCcccHHHH
Q 012488 272 GTGTVTH------KGDIKKFQLATRNRAKDKILGGK-IIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYFA 344 (462)
Q Consensus 272 ~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~i~~~~~~~~~~~~v~liGDAAh~~~P~~G~G~~~a 344 (462)
....... ....+++.+.+.+.+...+.... ......+++.....++|..+|++|+|||||.++|+.|||+|+|
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~LvGDAAh~~~P~~GqG~~~a 299 (382)
T TIGR01984 220 VWCLPSKQADTIANLPDAEFLAELQQAFGWRLGKITQVGERKTYPLKLRIAETHVHPRVVLIGNAAQTLHPIAGQGFNLG 299 (382)
T ss_pred EEECCHHHHHHHHcCCHHHHHHHHHHHHhhhccCeEEcCCccEeecchhhhhheecCCEEEEeecccccCCccccchhhh
Confidence 2211100 11222333333333332221111 1123345555556677889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhhhhHHHHHHHhHhhhccCch
Q 012488 345 AKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNP 401 (462)
Q Consensus 345 ~~da~~la~~l~~a~~~~~~~~~~~~L~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (462)
|+||..|++.|..... + ...+..|..|++.++.......+....+.+++....+
T Consensus 300 l~Da~~La~~L~~~~~-~--~~~~~~l~~Y~~~r~~~~~~~~~~~~~~~~~~~~~~~ 353 (382)
T TIGR01984 300 LRDVETLAEVLIDARI-D--LGTYALLQEYLRRRQFDQFITIGLTDGLNRLFSNHIP 353 (382)
T ss_pred HHHHHHHHHHHHHhcc-C--ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 9999999999987641 1 1346889999999988888888888888888876553
No 37
>PRK06834 hypothetical protein; Provisional
Probab=100.00 E-value=1.3e-32 Score=278.24 Aligned_cols=321 Identities=16% Similarity=0.135 Sum_probs=209.0
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCC--CCcccccCc---cccccCCCChhhHhcccceEEEEcCCCce
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNC--KPCGGAIPL---CMVGEFDLPLDIIDRKVTKMKMISPSNVA 124 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~--~~~g~~i~~---~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 124 (462)
++||+||||||+|+++|+.|+++|++|+|+||.+... ...+.+++. +.|+++|+.+.+...... ..........
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~-~~~~~~~~~~ 81 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQV-AQVTGFAATR 81 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCc-cccceeeeEe
Confidence 4799999999999999999999999999999987321 233445653 467888998887653211 1100000111
Q ss_pred EeccCcccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEE
Q 012488 125 VDIGQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAV 203 (462)
Q Consensus 125 ~~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlv 203 (462)
++.........+...+.+..+++.|.+.+++.|+++++++ +++++. +++.+.+++.++ .+++||+|
T Consensus 82 ~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~---~~~~v~v~~~~g----------~~i~a~~v 148 (488)
T PRK06834 82 LDISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQ---DDTGVDVELSDG----------RTLRAQYL 148 (488)
T ss_pred cccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEE---cCCeEEEEECCC----------CEEEeCEE
Confidence 1211111122344578899999999999999999999998 988873 344577777554 58999999
Q ss_pred EecCCCChHhhhhhcCCC--CceEEE-EEEEEecCCcccccccCeeEEEecCCCCCCeEEEEEeCC-C-ceEEEEEec--
Q 012488 204 IGADGANSRVAKSINAGD--YDYAIA-FQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKC-D-HVAVGTGTV-- 276 (462)
Q Consensus 204 I~AdG~~S~vr~~l~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p~~-~-~~~v~~~~~-- 276 (462)
|+|||.+|.+|+++++.. +.+... +...+.+.... .. ..+. .+.++..+.|.. + ...+.....
T Consensus 149 VgADG~~S~vR~~lgi~~~g~~~~~~~~~~dv~~~~~~-----~~-~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~ 218 (488)
T PRK06834 149 VGCDGGRSLVRKAAGIDFPGWDPTTSYLIAEVEMTEEP-----EW-GVHR----DALGIHAFGRLEDEGPVRVMVTEKQV 218 (488)
T ss_pred EEecCCCCCcHhhcCCCCCCCCcceEEEEEEEEecCCC-----Cc-ceee----CCCceEEEeccCCCCeEEEEEecCCC
Confidence 999999999999998652 222111 11122222110 00 0110 112223333322 1 122221111
Q ss_pred --cCCCcHHHHHHHHHHhhhcccCCCeEEeEEeeecCCCCCCcccCCCEEEEccCCcCcccCCcccHHHHHHHHHHHHHH
Q 012488 277 --THKGDIKKFQLATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEA 354 (462)
Q Consensus 277 --~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~v~liGDAAh~~~P~~G~G~~~a~~da~~la~~ 354 (462)
......+++.+.+...+...+......+...++.......+|..|||+|+|||||.++|+.|||+|+||+||..|++.
T Consensus 219 ~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~r~a~~~~~gRV~LaGDAAH~~~P~gGQG~N~gi~DA~nLawk 298 (488)
T PRK06834 219 GATGEPTLDDLREALIAVYGTDYGIHSPTWISRFTDMARQAASYRDGRVLLAGDAAHVHSPVGGQGLNTGVQDAVNLGWK 298 (488)
T ss_pred CCCCCCCHHHHHHHHHHhhCCCCccccceeEEeccccceecccccCCcEEEEeeccccCCccccccccccHHHHHHHHHH
Confidence 112234556665655544333333444555666666778889999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCChhHHHHHHHHHHHhhhhHHHHHHHhHhhhc
Q 012488 355 IIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFY 397 (462)
Q Consensus 355 l~~a~~~~~~~~~~~~L~~y~~~~~~~~~~~~~~~~~~~~~~~ 397 (462)
|...+... ..+..|..|+++++......+........++.
T Consensus 299 La~vl~g~---~~~~lLd~Ye~eRrp~~~~~~~~t~~~~~~~~ 338 (488)
T PRK06834 299 LAQVVKGT---SPESLLDTYHAERHPVAARVLRNTMAQVALLR 338 (488)
T ss_pred HHHHHcCC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 98877543 45788888888888877777766666555554
No 38
>PLN02985 squalene monooxygenase
Probab=100.00 E-value=9.4e-32 Score=272.52 Aligned_cols=351 Identities=13% Similarity=0.139 Sum_probs=202.6
Q ss_pred CCCCCCCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCC-CCCCcccccCc---cccccCCCChhhHhc---ccceE
Q 012488 43 SPKLTNRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLD-NCKPCGGAIPL---CMVGEFDLPLDIIDR---KVTKM 115 (462)
Q Consensus 43 ~~~~~~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~-~~~~~g~~i~~---~~l~~~g~~~~~~~~---~~~~~ 115 (462)
++.+....+||+||||||+|+++|+.|+++|++|+|+||... ..+.+|..+++ +.|+++|+.+.+... ...++
T Consensus 36 ~~~~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~ 115 (514)
T PLN02985 36 AEERKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGM 115 (514)
T ss_pred cccCcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccE
Confidence 344566778999999999999999999999999999999862 33446666654 468889988766432 34555
Q ss_pred EEEcCCCce--EeccCccc---CCCeEEeeehHHHHHHHHHHHHHC-CCEEEcceeEEEEecCCCCCCEEEEEeccCCcc
Q 012488 116 KMISPSNVA--VDIGQTLK---PHEYIGMVRREVLDAYLRERAEKN-GASVINGLFMKMDLPRNFEQPYVLYYTEYDGTK 189 (462)
Q Consensus 116 ~~~~~~~~~--~~~~~~~~---~~~~~~~v~r~~l~~~L~~~~~~~-gv~i~~~~v~~~~~~~~~~~~~~v~~~~~~~~~ 189 (462)
.++. ++.. ..++.... .......++|..|.+.|++.+.+. +++++.++++++.. +++....|++.+.
T Consensus 116 ~v~~-~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~gtvv~li~--~~~~v~gV~~~~~---- 188 (514)
T PLN02985 116 AVYK-DGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEGTVKSLIE--EKGVIKGVTYKNS---- 188 (514)
T ss_pred EEEE-CCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEeeeEEEEEE--cCCEEEEEEEEcC----
Confidence 5554 3332 23321111 112234788999999999999876 59998888777652 2222234555432
Q ss_pred CCCCceeEEEecEEEecCCCChHhhhhhcCCCC---ceEEEEEEEEecCCcccccccCeeEEEecCCCCCCeEEEEEeCC
Q 012488 190 GGVGEKRTLEVDAVIGADGANSRVAKSINAGDY---DYAIAFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKC 266 (462)
Q Consensus 190 ~~~~~~~~~~adlvI~AdG~~S~vr~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p~~ 266 (462)
.|+..+++||+||+|||.+|.+|++++.... .+...+. ..... ...++..+++++. ...+.++|..
T Consensus 189 --dG~~~~~~AdLVVgADG~~S~vR~~l~~~~~~~~s~~~~~~----~~~~~-~~~~~~~~~~~~~----~~~~l~ypi~ 257 (514)
T PLN02985 189 --AGEETTALAPLTVVCDGCYSNLRRSLNDNNAEVLSYQVGYI----SKNCR-LEEPEKLHLIMSK----PSFTMLYQIS 257 (514)
T ss_pred --CCCEEEEECCEEEECCCCchHHHHHhccCCCcceeEeEEEE----Ecccc-CCCCCcceEEcCC----CceEEEEEeC
Confidence 1444578899999999999999999976532 2222221 11111 1123333445442 2345555544
Q ss_pred Cc-eEEEEEeccC-CC-----cHHHHHHH-H----HHhhhcccCC--CeEEeEEeeecCCCCCCcccCCCEEEEccCCcC
Q 012488 267 DH-VAVGTGTVTH-KG-----DIKKFQLA-T----RNRAKDKILG--GKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGY 332 (462)
Q Consensus 267 ~~-~~v~~~~~~~-~~-----~~~~~~~~-~----~~~~~~~l~~--~~~~~~~~~~i~~~~~~~~~~~~v~liGDAAh~ 332 (462)
+. ..+......+ .+ .+..+.+. . .+.+.+.+.. .+...+...+....+...+..+|++|+|||||+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~p~~l~~~f~~~~~~~~~~~~~p~~~l~~~~~~~~~vvLiGDAaH~ 337 (514)
T PLN02985 258 STDVRCVFEVLPDNIPSIANGEMSTFVKNTIAPQVPPKLRKIFLKGIDEGAHIKVVPTKRMSATLSDKKGVIVLGDAFNM 337 (514)
T ss_pred CCeEEEEEEEeCCCCCCcChhhHHHHHHhccccccCHHHHHHHHhhcccccceeecCcccccccccCCCCEEEEeccccc
Confidence 33 2222221111 11 12222111 0 1111111110 011123333333333345566899999999999
Q ss_pred cccCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhhhhHHHHHHHhHhhhcc-Cch----hHHHHH
Q 012488 333 VTKCSGEGIYFAAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYR-SNP----AREAFV 407 (462)
Q Consensus 333 ~~P~~G~G~~~a~~da~~la~~l~~a~~~~~~~~~~~~L~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~ 407 (462)
++|++|||+|+|++||..|++.|...-...+.......|..|+..++............+.++|.. +++ +++..+
T Consensus 338 ~~P~~GQGmn~AleDA~vLa~lL~~~~~~~~~~~~~~aL~~y~~~Rk~r~~~i~~la~al~~~f~a~~~~~~~~l~~~~f 417 (514)
T PLN02985 338 RHPAIASGMMVLLSDILILRRLLQPLSNLGNANKVSEVIKSFYDIRKPMSATVNTLGNAFSQVLVASTDEAKEAMRQGCY 417 (514)
T ss_pred CCCCccccHhHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999999999999999997632111100112344444444444444444445556666643 333 455555
Q ss_pred HHhc
Q 012488 408 EMCA 411 (462)
Q Consensus 408 ~~~~ 411 (462)
+++.
T Consensus 418 ~y~~ 421 (514)
T PLN02985 418 DYLC 421 (514)
T ss_pred HHHH
Confidence 5554
No 39
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=100.00 E-value=9.9e-32 Score=266.85 Aligned_cols=332 Identities=17% Similarity=0.180 Sum_probs=211.4
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCC-Ccc-----cccC---ccccccCCCChhhHhc---ccceE
Q 012488 48 NRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCK-PCG-----GAIP---LCMVGEFDLPLDIIDR---KVTKM 115 (462)
Q Consensus 48 ~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~-~~g-----~~i~---~~~l~~~g~~~~~~~~---~~~~~ 115 (462)
++.+||+||||||+|+++|+.|++.|++|+|+||++.... .++ ..++ .+.|+.+|+.+.+... ....+
T Consensus 3 ~~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 82 (388)
T PRK07608 3 HMKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDM 82 (388)
T ss_pred CccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEE
Confidence 4578999999999999999999999999999999974321 122 1222 3467888888776432 23444
Q ss_pred EEEcCCCceEeccCccc-CCCeEEeeehHHHHHHHHHHHHHCC-CEEEcceeEEEEecCCCCCCEEEEEeccCCccCCCC
Q 012488 116 KMISPSNVAVDIGQTLK-PHEYIGMVRREVLDAYLRERAEKNG-ASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVG 193 (462)
Q Consensus 116 ~~~~~~~~~~~~~~~~~-~~~~~~~v~r~~l~~~L~~~~~~~g-v~i~~~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 193 (462)
.+.......+.+..... .....+.+++..+++.|.+.+++.| ++++..+++++.. +++.+.|++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~~~~v~~i~~---~~~~~~v~~~~g-------- 151 (388)
T PRK07608 83 RVFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWFPARAQGLEV---DPDAATLTLADG-------- 151 (388)
T ss_pred EEEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEEcceeEEEEe---cCCeEEEEECCC--------
Confidence 55543333333321111 1122346899999999999999988 9988333888762 334577777665
Q ss_pred ceeEEEecEEEecCCCChHhhhhhcCCCC--ce-EEEEEEEEecCCcccccccCeeEEEecCCCCCCeEEEEEeCCCce-
Q 012488 194 EKRTLEVDAVIGADGANSRVAKSINAGDY--DY-AIAFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHV- 269 (462)
Q Consensus 194 ~~~~~~adlvI~AdG~~S~vr~~l~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p~~~~~- 269 (462)
.+++||+||+|||.+|.+|+.++.... .+ ..++...+..+.. ..+....++ .+++++|++|..+..
T Consensus 152 --~~~~a~~vI~adG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~----~~~~~~~~~p~~~~~~ 221 (388)
T PRK07608 152 --QVLRADLVVGADGAHSWVRSQAGIKAERRPYRQTGVVANFKAERP----HRGTAYQWF----RDDGILALLPLPDGHV 221 (388)
T ss_pred --CEEEeeEEEEeCCCCchHHHhcCCCccccccCCEEEEEEEEecCC----CCCEEEEEe----cCCCCEEEeECCCCCe
Confidence 689999999999999999999976521 11 1112111221111 112222333 244577888876653
Q ss_pred EEEEEeccC------CCcHHHHHHHHHHhhhcccCCCeEE-eEEeeecCCCCCCcccCCCEEEEccCCcCcccCCcccHH
Q 012488 270 AVGTGTVTH------KGDIKKFQLATRNRAKDKILGGKII-RVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIY 342 (462)
Q Consensus 270 ~v~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~i~~~~~~~~~~~~v~liGDAAh~~~P~~G~G~~ 342 (462)
.+....... ....+++.+.+...+.+.+..-... ....+++.....+.|..+|++++|||||.++|++|||+|
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rv~liGDAAh~~~P~~GqG~n 301 (388)
T PRK07608 222 SMVWSARTAHADELLALSPEALAARVERASGGRLGRLECVTPAAGFPLRLQRVDRLVAPRVALVGDAAHLIHPLAGQGMN 301 (388)
T ss_pred EEEEECCHHHHHHHHCCCHHHHHHHHHHHHHHhcCCceecCCcceeecchhhhhhhhcCceEEEeccccccCCccccccc
Confidence 222221100 0112334444433332222111111 122345544556788899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhhhhHHHHHHHhHhhhccCch
Q 012488 343 FAAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNP 401 (462)
Q Consensus 343 ~a~~da~~la~~l~~a~~~~~~~~~~~~L~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (462)
+||+||..|++.|......++ ......|..|++.++.......+..+.+.+++.....
T Consensus 302 ~ai~da~~La~~L~~~~~~~~-~~~~~~l~~Ye~~R~~~~~~~~~~~~~~~~~~~~~~~ 359 (388)
T PRK07608 302 LGLRDVAALADVLAGREPFRD-LGDLRLLRRYERARREDILALQVATDGLQRLFALPGP 359 (388)
T ss_pred hhHHHHHHHHHHHHHhhccCC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 999999999999977532221 1245778888888887777777777777777776554
No 40
>PRK07538 hypothetical protein; Provisional
Probab=100.00 E-value=1.7e-32 Score=273.91 Aligned_cols=320 Identities=20% Similarity=0.245 Sum_probs=190.7
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCccccc--C---ccccccCCCChhhHhccc--ceEEEEcCCCc
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAI--P---LCMVGEFDLPLDIIDRKV--TKMKMISPSNV 123 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i--~---~~~l~~~g~~~~~~~~~~--~~~~~~~~~~~ 123 (462)
+||+||||||+||++|+.|+++|++|+||||.+.. ...|.++ + .+.|+++|+.+.+..... ..+.++++.+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~-~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~ 79 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL-RPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQ 79 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc-cccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCC
Confidence 48999999999999999999999999999998743 2445555 3 345679999888765433 55666766655
Q ss_pred eEeccC---cccCCCeEEeeehHHHHHHHHHHHHH-CC-CEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeE
Q 012488 124 AVDIGQ---TLKPHEYIGMVRREVLDAYLRERAEK-NG-ASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRT 197 (462)
Q Consensus 124 ~~~~~~---~~~~~~~~~~v~r~~l~~~L~~~~~~-~g-v~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 197 (462)
.+.... ..........++|..|++.|.+.+.+ .| .++++++ |++++. .+ +.+++.+.++ ..++..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~--~~-~~~~~~~~~~-----~~g~~~~ 151 (413)
T PRK07538 80 RIWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQ--DA-DVTVVFLGDR-----AGGDLVS 151 (413)
T ss_pred EEeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEe--cC-CceEEEEecc-----CCCccce
Confidence 332110 00011112368999999999999866 47 4688888 988873 33 3466777664 1244578
Q ss_pred EEecEEEecCCCChHhhhhhcCCC----CceEEEEEEEEecCCcc----cccc---cCeeEEEecCCC-CC---CeEEEE
Q 012488 198 LEVDAVIGADGANSRVAKSINAGD----YDYAIAFQERVKIPDEK----MVYY---ENLAEMYVGDDV-SP---DFYGWV 262 (462)
Q Consensus 198 ~~adlvI~AdG~~S~vr~~l~~~~----~~~~~~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~-~~---~~~~w~ 262 (462)
++||+||+|||.+|.+|++++... +.....|......+... .... .....+|..... .+ ..+.|+
T Consensus 152 ~~adlvIgADG~~S~vR~~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~g~~~~~w~ 231 (413)
T PRK07538 152 VRGDVLIGADGIHSAVRAQLYPDEGPPRWNGVMMWRGVTEAPPFLTGRSMVMAGHLDGKLVVYPISEPVDADGRQLINWV 231 (413)
T ss_pred EEeeEEEECCCCCHHHhhhhcCCCCCCcccceEEEEEeecCccccCCCcEEEEcCCCCEEEEEECCCCcccCCceEEEEE
Confidence 999999999999999999997542 22233343322221100 0000 000111111000 00 234555
Q ss_pred EeCCCce--EEEEEeccCCCcHHHHHHHHHHh------hhcccCCCeEEeEEeeecCC-CCCCcccCCCEEEEccCCcCc
Q 012488 263 FPKCDHV--AVGTGTVTHKGDIKKFQLATRNR------AKDKILGGKIIRVEAHPIPE-HPRPRRLSGRVALVGDAAGYV 333 (462)
Q Consensus 263 ~p~~~~~--~v~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~i~~-~~~~~~~~~~v~liGDAAh~~ 333 (462)
++..... .............+++.+.+... +.+.+... .....+++.. .+.++|..+|++|+|||||.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~~~~p~~~~~~~~~w~~grv~LvGDAAH~~ 309 (413)
T PRK07538 232 AEVRVDDAGAPRREDWNRPGDLEDFLPHFADWRFDWLDVPALIRAA--EAIYEYPMVDRDPLPRWTRGRVTLLGDAAHPM 309 (413)
T ss_pred EEEcCCccCCCcccccCCccCHHHHHHHhcCCCCCcccHHHHHhcC--cceeeccccccCCCCcccCCcEEEEeeccCcC
Confidence 4432110 00000111122234444333221 11222111 1122234433 356789999999999999999
Q ss_pred ccCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhhhhHHH
Q 012488 334 TKCSGEGIYFAAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYK 387 (462)
Q Consensus 334 ~P~~G~G~~~a~~da~~la~~l~~a~~~~~~~~~~~~L~~y~~~~~~~~~~~~~ 387 (462)
+|++|||+|+||+||..|++.|.+. + .....|..|++.++........
T Consensus 310 ~P~~GqG~~~Ai~Da~~La~~L~~~---~---~~~~aL~~Ye~~R~~~~~~~~~ 357 (413)
T PRK07538 310 YPVGSNGASQAILDARALADALAAH---G---DPEAALAAYEAERRPATAQIVL 357 (413)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhc---C---CHHHHHHHHHHHhhHHHHHHHH
Confidence 9999999999999999999999762 1 1345566666655555444433
No 41
>PRK06126 hypothetical protein; Provisional
Probab=100.00 E-value=7.9e-32 Score=278.37 Aligned_cols=333 Identities=17% Similarity=0.130 Sum_probs=202.6
Q ss_pred CCCCCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCC-CCCCcccccC---ccccccCCCChhhHhcccc-----eE
Q 012488 45 KLTNRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLD-NCKPCGGAIP---LCMVGEFDLPLDIIDRKVT-----KM 115 (462)
Q Consensus 45 ~~~~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~-~~~~~g~~i~---~~~l~~~g~~~~~~~~~~~-----~~ 115 (462)
+|.++++||+||||||+||++|+.|+++|++|+||||.+. .....+.+++ .+.|+++|+.+++.+.... ..
T Consensus 2 ~~~~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~ 81 (545)
T PRK06126 2 MENTSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDI 81 (545)
T ss_pred CCCCccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCc
Confidence 3566789999999999999999999999999999999873 2233444554 3567888998877654321 11
Q ss_pred -EEEcCCCceE---eccCcc-------------cCCCeEEeeehHHHHHHHHHHHHHC-CCEEEcce-eEEEEecCCCCC
Q 012488 116 -KMISPSNVAV---DIGQTL-------------KPHEYIGMVRREVLDAYLRERAEKN-GASVINGL-FMKMDLPRNFEQ 176 (462)
Q Consensus 116 -~~~~~~~~~~---~~~~~~-------------~~~~~~~~v~r~~l~~~L~~~~~~~-gv~i~~~~-v~~~~~~~~~~~ 176 (462)
.+....+..+ ...... ........+.|..|++.|.+.+++. |+++++++ |++++. +++
T Consensus 82 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~---~~~ 158 (545)
T PRK06126 82 AYFTRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQ---DAD 158 (545)
T ss_pred eEEecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEE---CCC
Confidence 1112223211 111000 0111234688899999999999875 79999998 999873 334
Q ss_pred CEEEEEeccCCccCCCCceeEEEecEEEecCCCChHhhhhhcCCCC--ce-EEEEEEEEecCCc--ccccccCeeEEEec
Q 012488 177 PYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSRVAKSINAGDY--DY-AIAFQERVKIPDE--KMVYYENLAEMYVG 251 (462)
Q Consensus 177 ~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S~vr~~l~~~~~--~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 251 (462)
.+++++.+. .+++..++++|+||+|||.+|.+|++++.... .+ ...+...+..++. .....+....++++
T Consensus 159 ~v~v~~~~~-----~~g~~~~i~ad~vVgADG~~S~VR~~lgi~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 233 (545)
T PRK06126 159 GVTATVEDL-----DGGESLTIRADYLVGCDGARSAVRRSLGISYEGTSGLQRDLSIYIRAPGLAALVGHDPAWMYWLFN 233 (545)
T ss_pred eEEEEEEEC-----CCCcEEEEEEEEEEecCCcchHHHHhcCCccccCCCcceEEEEEEEcCchHHHhcCCCceEEEEEC
Confidence 466776552 12445689999999999999999999986521 11 1111111222111 11111112222222
Q ss_pred CCCCCCeEEEEEeCC-CceEEEEEeccC----CCcHHHHHHHHHHhhhcccCCCeEEeEEeeecCCCCCCcccCCCEEEE
Q 012488 252 DDVSPDFYGWVFPKC-DHVAVGTGTVTH----KGDIKKFQLATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLSGRVALV 326 (462)
Q Consensus 252 ~~~~~~~~~w~~p~~-~~~~v~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~v~li 326 (462)
. +.++.++|.. +..+........ ....+++.+.+.+.+...+ ..++.....+.......++|..|||+|+
T Consensus 234 p----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~w~~~~~~a~~~~~gRv~L~ 308 (545)
T PRK06126 234 P----DRRGVLVAIDGRDEWLFHQLRGGEDEFTIDDVDARAFVRRGVGEDI-DYEVLSVVPWTGRRLVADSYRRGRVFLA 308 (545)
T ss_pred C----CccEEEEEECCCCeEEEEEecCCCCCCCCCHHHHHHHHHHhcCCCC-CeEEEeecccchhheehhhhccCCEEEe
Confidence 2 2233333322 222211111111 1122344444444333211 1233334444455556778889999999
Q ss_pred ccCCcCcccCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhhhhHHHHHHHhH
Q 012488 327 GDAAGYVTKCSGEGIYFAAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQ 393 (462)
Q Consensus 327 GDAAh~~~P~~G~G~~~a~~da~~la~~l~~a~~~~~~~~~~~~L~~y~~~~~~~~~~~~~~~~~~~ 393 (462)
|||||.++|+.|||+|+||+||..|++.|...++.. ..+..|..|++.++..............
T Consensus 309 GDAAH~~~P~~GqG~N~gieDa~~La~~La~~~~~~---~~~~lL~~Y~~eR~p~~~~~~~~s~~~~ 372 (545)
T PRK06126 309 GDAAHLFTPTGGYGMNTGIGDAVNLAWKLAAVLNGW---AGPALLDSYEAERRPIAARNTDYARRNA 372 (545)
T ss_pred chhhccCCCCcCcccchhHHHHHHHHHHHHHHHcCC---CcHHHHhhhHHHhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998765432 3467788888777776655555444433
No 42
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=100.00 E-value=2.6e-31 Score=264.47 Aligned_cols=331 Identities=17% Similarity=0.159 Sum_probs=208.0
Q ss_pred CccEEEECCchHHHHHHHHHHHC---CCcEEEEcCCCCCC------CCcccccC---ccccccCCCChhhHhcc--cceE
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKN---GVETFLIERKLDNC------KPCGGAIP---LCMVGEFDLPLDIIDRK--VTKM 115 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~---g~~v~v~E~~~~~~------~~~g~~i~---~~~l~~~g~~~~~~~~~--~~~~ 115 (462)
++||+||||||+|+++|+.|+++ |++|+||||..+.. ..++..++ .+.|+++|+++.+.... ...+
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~ 82 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITHI 82 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccEE
Confidence 57999999999999999999998 99999999964221 12344444 35788899988775543 2333
Q ss_pred EEEcCCCc-eEecc-CcccCCCeEEeeehHHHHHHHHHHHHHC-CCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCC
Q 012488 116 KMISPSNV-AVDIG-QTLKPHEYIGMVRREVLDAYLRERAEKN-GASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGG 191 (462)
Q Consensus 116 ~~~~~~~~-~~~~~-~~~~~~~~~~~v~r~~l~~~L~~~~~~~-gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~ 191 (462)
.+...... ...+. .........+.+.|..|.+.|.+.+.+. |+++++++ |+++.. .++.+.|++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~---~~~~~~v~~~~g------ 153 (395)
T PRK05732 83 HVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVER---TQGSVRVTLDDG------ 153 (395)
T ss_pred EEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEE---cCCeEEEEECCC------
Confidence 33322111 11111 0111112234688999999999988774 79999877 888862 344577777665
Q ss_pred CCceeEEEecEEEecCCCChHhhhhhcCCCCc--e-EEEEEEEEecCCcccccccCeeEEEecCCCCCCeEEEEEeCCCc
Q 012488 192 VGEKRTLEVDAVIGADGANSRVAKSINAGDYD--Y-AIAFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDH 268 (462)
Q Consensus 192 ~~~~~~~~adlvI~AdG~~S~vr~~l~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p~~~~ 268 (462)
..+++|+||+|||.+|.+|+.++..... + ...+...+...... .......+ .+.++.+++|..++
T Consensus 154 ----~~~~a~~vI~AdG~~S~vr~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~----~~~g~~~~~p~~~g 221 (395)
T PRK05732 154 ----ETLTGRLLVAADGSHSALREALGIDWQQHPYEQVAVIANVTTSEAH----QGRAFERF----TEHGPLALLPMSDG 221 (395)
T ss_pred ----CEEEeCEEEEecCCChhhHHhhCCCccceecCCEEEEEEEEecCCC----CCEEEEee----cCCCCEEEeECCCC
Confidence 6799999999999999999998765211 1 11222222211110 01110111 12334666776654
Q ss_pred eE-EEEEeccC------CCcHHHHHHHHHHhhhcccCCC-eEEeEEeeecCCCCCCcccCCCEEEEccCCcCcccCCccc
Q 012488 269 VA-VGTGTVTH------KGDIKKFQLATRNRAKDKILGG-KIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEG 340 (462)
Q Consensus 269 ~~-v~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~i~~~~~~~~~~~~v~liGDAAh~~~P~~G~G 340 (462)
.. +......+ ....+.+.+.+.+.+...+... ...+...+++.....++|..+|++|+|||||.++|++|||
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~grv~LvGDAAh~~~P~~GqG 301 (395)
T PRK05732 222 RCSLVWCHPLEDAEEVLSWSDAQFLAELQQAFGWRLGRITHAGKRSAYPLALVTAAQQISHRLALVGNAAQTLHPIAGQG 301 (395)
T ss_pred CeEEEEECCHHHHHHHHcCCHHHHHHHHHHHHHhhhcceeecCCcceecccccchhhhccCcEEEEeecccccCCccccc
Confidence 32 22211100 0112233333333222111110 1112334555555567788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhhhhHHHHHHHhHhhhccCch
Q 012488 341 IYFAAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNP 401 (462)
Q Consensus 341 ~~~a~~da~~la~~l~~a~~~~~~~~~~~~L~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (462)
+|+||+||..|++.|...+..+.+......|..|++.++......+...+.+.+++.....
T Consensus 302 ~~~al~Da~~La~~L~~~~~~~~~~~~~~~l~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~ 362 (395)
T PRK05732 302 FNLGLRDVMSLAETLTQALARGEDIGDYAVLQRYQQRRQQDREATIGFTDGLVRLFANRWA 362 (395)
T ss_pred cchHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 9999999999999998876543322235789999998888888888888888888877654
No 43
>PRK07588 hypothetical protein; Provisional
Probab=100.00 E-value=8.6e-32 Score=267.29 Aligned_cols=326 Identities=17% Similarity=0.133 Sum_probs=198.6
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCccccc--C---ccccccCCCChhhHhcc--cceEEEEcCCCc
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAI--P---LCMVGEFDLPLDIIDRK--VTKMKMISPSNV 123 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i--~---~~~l~~~g~~~~~~~~~--~~~~~~~~~~~~ 123 (462)
+||+||||||+||++|+.|+++|++|+|+||.+.. +..|.++ + .+.|+++|+.+.+.... +..+.+++..+.
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~-~~~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~ 79 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPEL-RTGGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGR 79 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCc-cCCCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCC
Confidence 48999999999999999999999999999998743 2333322 2 35788999988876543 456667766665
Q ss_pred eEe-cc--Cccc-CCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEE
Q 012488 124 AVD-IG--QTLK-PHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTL 198 (462)
Q Consensus 124 ~~~-~~--~~~~-~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 198 (462)
... +. .... .......+.|..|.+.|.+.+. .|+++++++ |++++. +++.+.|++.+| .++
T Consensus 80 ~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~~-~~v~i~~~~~v~~i~~---~~~~v~v~~~~g----------~~~ 145 (391)
T PRK07588 80 RKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAID-GQVETIFDDSIATIDE---HRDGVRVTFERG----------TPR 145 (391)
T ss_pred EEEEecHHHccccCCCceEEEEHHHHHHHHHHhhh-cCeEEEeCCEEeEEEE---CCCeEEEEECCC----------CEE
Confidence 321 21 1111 1112347899999999988664 479999998 988873 344588888877 678
Q ss_pred EecEEEecCCCChHhhhhhcCCCC--ceEEEE-EEEEecCCcccccccCeeEEEecCCCCCCeEEEEEeCCCceE-EEEE
Q 012488 199 EVDAVIGADGANSRVAKSINAGDY--DYAIAF-QERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHVA-VGTG 274 (462)
Q Consensus 199 ~adlvI~AdG~~S~vr~~l~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p~~~~~~-v~~~ 274 (462)
++|+||+|||.+|.+|+.+..... .....+ .......... ........++.+ ++.++..+|..+... +...
T Consensus 146 ~~d~vIgADG~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~----~g~~~~~~p~~~~~~~~~~~ 220 (391)
T PRK07588 146 DFDLVIGADGLHSHVRRLVFGPERDFEHYLGCKVAACVVDGYR-PRDERTYVLYNE----VGRQVARVALRGDRTLFLFI 220 (391)
T ss_pred EeCEEEECCCCCccchhhccCCccceEEEcCcEEEEEEcCCCC-CCCCceEEEEeC----CCCEEEEEecCCCCeEEEEE
Confidence 999999999999999998643321 111111 1111111110 001111122221 233455556543321 1111
Q ss_pred eccC----CCcHHHHHHHHHHhhhc-------ccCC-CeEEeEEeeecCCCCCCcccCCCEEEEccCCcCcccCCcccHH
Q 012488 275 TVTH----KGDIKKFQLATRNRAKD-------KILG-GKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIY 342 (462)
Q Consensus 275 ~~~~----~~~~~~~~~~~~~~~~~-------~l~~-~~~~~~~~~~i~~~~~~~~~~~~v~liGDAAh~~~P~~G~G~~ 342 (462)
...+ ....+...+.+.+.+.. .+.. .........++.....++|..+|++|+|||||.++|+.|||+|
T Consensus 221 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~grv~LiGDAAH~~~P~~GqG~n 300 (391)
T PRK07588 221 FRAEHDNPPLTPAEEKQLLRDQFGDVGWETPDILAALDDVEDLYFDVVSQIRMDRWSRGRVALVGDAAACPSLLGGEGSG 300 (391)
T ss_pred EEcCCccccCCHHHHHHHHHHHhccCCccHHHHHHhhhcccchheeeeeeeccCccccCCEEEEEccccCCCCccCCcHH
Confidence 1100 01112223323222211 1100 0000111112222355678899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhhhhHHHHHHHhHhhhccCch
Q 012488 343 FAAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYRSNP 401 (462)
Q Consensus 343 ~a~~da~~la~~l~~a~~~~~~~~~~~~L~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (462)
+||+||..|++.|.... . ..+..|..|++.++..........+.+.+++....+
T Consensus 301 ~aieDa~~La~~L~~~~--~---~~~~al~~Y~~~R~~~~~~~~~~~~~~~~~~~~~~~ 354 (391)
T PRK07588 301 LAITEAYVLAGELARAG--G---DHRRAFDAYEKRLRPFIAGKQAAAAKFLSVFAPKTR 354 (391)
T ss_pred HHHHHHHHHHHHHHhcc--C---CHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCH
Confidence 99999999999996521 1 235677777777777777777777777776665553
No 44
>PRK06475 salicylate hydroxylase; Provisional
Probab=100.00 E-value=1.8e-31 Score=265.38 Aligned_cols=323 Identities=16% Similarity=0.151 Sum_probs=192.3
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCccccc--C---ccccccCCCChhhHhcccc--eEEEEcCCCc
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAI--P---LCMVGEFDLPLDIIDRKVT--KMKMISPSNV 123 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i--~---~~~l~~~g~~~~~~~~~~~--~~~~~~~~~~ 123 (462)
-+|+||||||+||++|+.|+++|++|+|+||.+.. ...|.++ + .+.|+++|+.+++...... .+.+.+....
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~-~~~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~ 81 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL-SEVGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKA 81 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc-CcCCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCc
Confidence 58999999999999999999999999999998743 2334443 3 3468889998887654332 2222221111
Q ss_pred -eE-e--ccCcc-c-CCCeEEeeehHHHHHHHHHHHHHC-CCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCce
Q 012488 124 -AV-D--IGQTL-K-PHEYIGMVRREVLDAYLRERAEKN-GASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEK 195 (462)
Q Consensus 124 -~~-~--~~~~~-~-~~~~~~~v~r~~l~~~L~~~~~~~-gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 195 (462)
.. . ..... . .......++|..|.+.|.+.+.+. |+++++++ |+++. .+++.+.+++.++ +.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~---~~~~~v~v~~~~~-------~~~ 151 (400)
T PRK06475 82 RPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQR---QTGNSITATIIRT-------NSV 151 (400)
T ss_pred ceEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEe---cCCCceEEEEEeC-------CCC
Confidence 11 1 10000 0 011123689999999999998774 79999888 88887 2344577777543 222
Q ss_pred eEEEecEEEecCCCChHhhhhhcCCCCc--eEEEEEEEEecCCccccc-----ccCeeEEEecCCCCCCeEEEEEeCCCc
Q 012488 196 RTLEVDAVIGADGANSRVAKSINAGDYD--YAIAFQERVKIPDEKMVY-----YENLAEMYVGDDVSPDFYGWVFPKCDH 268 (462)
Q Consensus 196 ~~~~adlvI~AdG~~S~vr~~l~~~~~~--~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~w~~p~~~~ 268 (462)
.++++|+||+|||.+|.+|++++..... ....|...+........+ ..+....|++ +++.+..+|..+.
T Consensus 152 ~~~~adlvIgADG~~S~vR~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~~~~p~~~~ 227 (400)
T PRK06475 152 ETVSAAYLIACDGVWSMLRAKAGFSKARFSGHIAWRTTLAADALPASFLSAMPEHKAVSAWLG----NKAHFIAYPVKGG 227 (400)
T ss_pred cEEecCEEEECCCccHhHHhhcCCCCCCcCCceEEEEEeehhhcchhhhhhcccCCceEEEEc----CCCEEEEEEccCC
Confidence 5789999999999999999998654333 334444433222111000 0111223333 2334555665543
Q ss_pred eEEEEEe----------ccCCCcHHHHHHHHHH---hhhcccCCCeEEeEEeeecCCCCCCcc-cCCCEEEEccCCcCcc
Q 012488 269 VAVGTGT----------VTHKGDIKKFQLATRN---RAKDKILGGKIIRVEAHPIPEHPRPRR-LSGRVALVGDAAGYVT 334 (462)
Q Consensus 269 ~~v~~~~----------~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~i~~~~~~~~-~~~~v~liGDAAh~~~ 334 (462)
..+.... .......+.+.+.+.. .+.+.+... .....+++......++ ..+|++|||||||.++
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~--~~~~~~~l~~~~~~~~~~~grvvLiGDAAH~~~ 305 (400)
T PRK06475 228 KFFNFVAITGGENPGEVWSKTGDKAHLKSIYADWNKPVLQILAAI--DEWTYWPLFEMADAQFVGPDRTIFLGDASHAVT 305 (400)
T ss_pred cEEEEEEEEcCCCCcccCCCCCCHHHHHHHhcCCChHHHHHHhcC--CceeECcCcccCCCcceecCCEEEEecccccCC
Confidence 2111110 0011112233332221 122222211 1233445444333444 5689999999999999
Q ss_pred cCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhhhhHHHHHHHhHhhhcc
Q 012488 335 KCSGEGIYFAAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYR 398 (462)
Q Consensus 335 P~~G~G~~~a~~da~~la~~l~~a~~~~~~~~~~~~L~~y~~~~~~~~~~~~~~~~~~~~~~~~ 398 (462)
|+.|||+|+||+||..|+++|.. . .-...|..|++.++..........+ +.+.+..
T Consensus 306 P~~GqG~n~aieDa~~La~~L~~----~---~~~~aL~~Ye~~R~~r~~~~~~~s~-~~~~~~~ 361 (400)
T PRK06475 306 PFAAQGAAMAIEDAAALAEALDS----D---DQSAGLKRFDSVRKERIAAVAKRGQ-LNRFAYH 361 (400)
T ss_pred chhhhhHHHHHHHHHHHHHHHhc----C---CHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhC
Confidence 99999999999999999999942 1 1236677777777666666555554 3444433
No 45
>PRK05868 hypothetical protein; Validated
Probab=100.00 E-value=1.8e-31 Score=262.07 Aligned_cols=282 Identities=18% Similarity=0.169 Sum_probs=174.2
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccC-----ccccccCCCChhhHhc--ccceEEEEcCCCce
Q 012488 52 RVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIP-----LCMVGEFDLPLDIIDR--KVTKMKMISPSNVA 124 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~-----~~~l~~~g~~~~~~~~--~~~~~~~~~~~~~~ 124 (462)
||+||||||+||++|+.|+++|++|+||||.+.. ...|.++. .+.|+++|+.+.+... .+..+.++++++..
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~-~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~ 81 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL-RPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE 81 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC-CCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence 8999999999999999999999999999999743 34455442 4578999998777443 35566677766654
Q ss_pred EeccCccc--C---CCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEE
Q 012488 125 VDIGQTLK--P---HEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTL 198 (462)
Q Consensus 125 ~~~~~~~~--~---~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 198 (462)
+....... . ......+.|..|.+.|.+.+ ..|+++++++ |++++. +++.++|++.+| .++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~~~-~~~v~i~~~~~v~~i~~---~~~~v~v~~~dg----------~~~ 147 (372)
T PRK05868 82 LFRDTESTPTGGPVNSPDIELLRDDLVELLYGAT-QPSVEYLFDDSISTLQD---DGDSVRVTFERA----------AAR 147 (372)
T ss_pred EeecccccccCCCCCCceEEEEHHHHHHHHHHhc-cCCcEEEeCCEEEEEEe---cCCeEEEEECCC----------CeE
Confidence 32211000 0 01122577888888876543 4589999988 888872 345688999887 689
Q ss_pred EecEEEecCCCChHhhhhhcCCCCc---eEEEEEEEEecCCcccccccCeeEEEecCCCCCCeEEEEEeCCC--ceEEEE
Q 012488 199 EVDAVIGADGANSRVAKSINAGDYD---YAIAFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCD--HVAVGT 273 (462)
Q Consensus 199 ~adlvI~AdG~~S~vr~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p~~~--~~~v~~ 273 (462)
++|+||+|||.+|.+|+++...... ....+...+.++... . ......++++.+ .+..++|..+ ......
T Consensus 148 ~adlvIgADG~~S~vR~~~~~~~~~~~~~~g~~~~~~~~~~~~-~-~~~~~~~~~g~~----~~~~~~~~~~~~~~~~~~ 221 (372)
T PRK05868 148 EFDLVIGADGLHSNVRRLVFGPEEQFVKRLGTHAAIFTVPNFL-E-LDYWQTWHYGDS----TMAGVYSARNNTEARAAL 221 (372)
T ss_pred EeCEEEECCCCCchHHHHhcCCcccceeecceEEEEEEcCCCC-C-CCcceEEEecCC----cEEEEEecCCCCceEEEE
Confidence 9999999999999999998653211 111222222333211 1 111222233322 2334444432 222222
Q ss_pred EeccCC-----Cc----HHHHHHHHHH------hhhcccCCCeEEeEEeee-cCCCCCCcccCCCEEEEccCCcCcccCC
Q 012488 274 GTVTHK-----GD----IKKFQLATRN------RAKDKILGGKIIRVEAHP-IPEHPRPRRLSGRVALVGDAAGYVTKCS 337 (462)
Q Consensus 274 ~~~~~~-----~~----~~~~~~~~~~------~~~~~l~~~~~~~~~~~~-i~~~~~~~~~~~~v~liGDAAh~~~P~~ 337 (462)
...... .. .+.+.+.+.+ .+.+.+..... . .++ +...+.++|+.||++|+|||||++.|+.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~l~~~f~~~~w~~~~l~~~~~~~~~--~-~~~~~~~~~~~~w~~grv~LvGDAAH~~~P~~ 298 (372)
T PRK05868 222 AFMDTELRIDYRDTEAQFAELQRRMAEDGWVRAQLLHYMRSAPD--F-YFDEMSQILMDRWSRGRVALVGDAGYCCSPLS 298 (372)
T ss_pred EEecCCcccccCChHHHHHHHHHHHhhCCCchHHHHhhcccCCc--e-eeccceEEecCCCCCCCeeeeecccccCCCcc
Confidence 111110 11 1222222221 01111111110 1 111 2223567889999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHH
Q 012488 338 GEGIYFAAKSGRMCAEAIIE 357 (462)
Q Consensus 338 G~G~~~a~~da~~la~~l~~ 357 (462)
|||+|+||+||..|++.|..
T Consensus 299 GqGa~~AleDa~~La~~L~~ 318 (372)
T PRK05868 299 GQGTSVALLGAYILAGELKA 318 (372)
T ss_pred CccHHHHHHHHHHHHHHHHh
Confidence 99999999999999999955
No 46
>PRK08163 salicylate hydroxylase; Provisional
Probab=100.00 E-value=8.5e-31 Score=260.83 Aligned_cols=325 Identities=16% Similarity=0.186 Sum_probs=199.8
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCccccc--C---ccccccCCCChhhHhcc--cceEEEEcC-
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAI--P---LCMVGEFDLPLDIIDRK--VTKMKMISP- 120 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i--~---~~~l~~~g~~~~~~~~~--~~~~~~~~~- 120 (462)
++.||+||||||+||++|+.|++.|++|+||||.+... ..|.++ + .+.|+++|+.+.+.... ...+.+++.
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~-~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~ 81 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIG-EIGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAV 81 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccc-cccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCC
Confidence 45799999999999999999999999999999997432 334444 3 34688889887765432 344555543
Q ss_pred CCceE---eccCcc--cCCCeEEeeehHHHHHHHHHHHHHCC-CEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCC
Q 012488 121 SNVAV---DIGQTL--KPHEYIGMVRREVLDAYLRERAEKNG-ASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVG 193 (462)
Q Consensus 121 ~~~~~---~~~~~~--~~~~~~~~v~r~~l~~~L~~~~~~~g-v~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 193 (462)
.+..+ ..+... ........++|..|.+.|.+.+.+.+ +++++++ ++++.. +++.+.+++.+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~---~~~~v~v~~~~g-------- 150 (396)
T PRK08163 82 DAEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQ---DGDGVTVFDQQG-------- 150 (396)
T ss_pred CCCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEec---CCCceEEEEcCC--------
Confidence 23221 111100 01111346899999999999998875 8999887 888872 344577877776
Q ss_pred ceeEEEecEEEecCCCChHhhhhhcCCC--CceEEEEEEEEecCCcccccccCeeEEEecCCCCCCeEEEEEeCCCce--
Q 012488 194 EKRTLEVDAVIGADGANSRVAKSINAGD--YDYAIAFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHV-- 269 (462)
Q Consensus 194 ~~~~~~adlvI~AdG~~S~vr~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p~~~~~-- 269 (462)
.+++||+||+|||.+|.+|+.+.... +.....|...+...........+....+.+ ++.++|.+|..+..
T Consensus 151 --~~~~ad~vV~AdG~~S~~r~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~~~~p~~~g~~~ 224 (396)
T PRK08163 151 --NRWTGDALIGCDGVKSVVRQSLVGDAPRVTGHVVYRAVIDVDDMPEDLRINAPVLWAG----PHCHLVHYPLRGGEQY 224 (396)
T ss_pred --CEEecCEEEECCCcChHHHhhccCCCCCccccEEEEEEEeHHHCcchhccCccEEEEc----CCceEEEEEecCCeEE
Confidence 68999999999999999999884332 222233433332211100000011122322 34467777765442
Q ss_pred EEEEEeccC--------CCcHHHHHHHHHHh---hhcccCCCeEEeEEeeec-CCCCCCcccCCCEEEEccCCcCcccCC
Q 012488 270 AVGTGTVTH--------KGDIKKFQLATRNR---AKDKILGGKIIRVEAHPI-PEHPRPRRLSGRVALVGDAAGYVTKCS 337 (462)
Q Consensus 270 ~v~~~~~~~--------~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~i-~~~~~~~~~~~~v~liGDAAh~~~P~~ 337 (462)
++......+ ....+++.+.+... +.+.+.... .+..+.+ ...+.++|..+|++|+|||||.++|+.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~grv~LiGDAAH~~~P~~ 302 (396)
T PRK08163 225 NLVVTFHSREQEEWGVKDGSKEEVLSYFEGIHPRPRQMLDKPT--SWKRWATADREPVAKWSTGRVTLLGDAAHPMTQYM 302 (396)
T ss_pred EEEEEECCCCCcccccCCCCHHHHHHHHcCCChHHHHHHhcCC--ceeEccccCCCcccccccCcEEEEecccccCCcch
Confidence 222111111 11223333333221 112221111 1111222 123556788899999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhhhhHHHHHHHhHhhhcc
Q 012488 338 GEGIYFAAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYR 398 (462)
Q Consensus 338 G~G~~~a~~da~~la~~l~~a~~~~~~~~~~~~L~~y~~~~~~~~~~~~~~~~~~~~~~~~ 398 (462)
|||+|+||+||..|++.|... .. .....|..|++.++..........+.+.+++..
T Consensus 303 GqG~n~ai~Da~~La~~L~~~---~~--~~~~al~~y~~~R~~r~~~~~~~s~~~~~~~~~ 358 (396)
T PRK08163 303 AQGACMALEDAVTLGKALEGC---DG--DAEAAFALYESVRIPRTARVVLSAREMGRIYHA 358 (396)
T ss_pred hccHHHHHHHHHHHHHHHHhc---cc--cHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhCC
Confidence 999999999999999998642 11 124567777776666666666666666665554
No 47
>PRK11445 putative oxidoreductase; Provisional
Probab=100.00 E-value=5.7e-31 Score=256.86 Aligned_cols=299 Identities=23% Similarity=0.309 Sum_probs=182.1
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCC-----CCCCcccccCcc---ccccCCCChh--hHhcccceEEEEcC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKLD-----NCKPCGGAIPLC---MVGEFDLPLD--IIDRKVTKMKMISP 120 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~-----~~~~~g~~i~~~---~l~~~g~~~~--~~~~~~~~~~~~~~ 120 (462)
+||+||||||||+++|+.|++. ++|+|+||++. ..+.||+.+++. .|+++|+... ..... .....
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~-~~~~~--- 76 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANP-QIFAV--- 76 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeecc-cccee---
Confidence 7999999999999999999999 99999999872 234689888765 4566676421 11100 00000
Q ss_pred CCceEeccCcc--cCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeE
Q 012488 121 SNVAVDIGQTL--KPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRT 197 (462)
Q Consensus 121 ~~~~~~~~~~~--~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 197 (462)
..+++.... ........++|..|+++|.+. .+.|+++++++ +++++. .++.+.|++.+. +...+
T Consensus 77 --~~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~-~~~gv~v~~~~~v~~i~~---~~~~~~v~~~~~-------g~~~~ 143 (351)
T PRK11445 77 --KTIDLANSLTRNYQRSYINIDRHKFDLWLKSL-IPASVEVYHNSLCRKIWR---EDDGYHVIFRAD-------GWEQH 143 (351)
T ss_pred --eEecccccchhhcCCCcccccHHHHHHHHHHH-HhcCCEEEcCCEEEEEEE---cCCEEEEEEecC-------CcEEE
Confidence 111111111 011112358999999999985 46789999887 888872 334577776332 23347
Q ss_pred EEecEEEecCCCChHhhhhhcCCC-CceEEEEEEEEecCCcccccccCeeEEEecCCCCCCeEEEEEeCCCceEEEEEec
Q 012488 198 LEVDAVIGADGANSRVAKSINAGD-YDYAIAFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTV 276 (462)
Q Consensus 198 ~~adlvI~AdG~~S~vr~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p~~~~~~v~~~~~ 276 (462)
++||+||+|||.+|.+|++++... .....++...+.... .. + ....+++.... .+|.|.+|.++...++...
T Consensus 144 i~a~~vV~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~-~~---~-~~~~~f~~~~~-~~~~W~~p~~~~~~~g~~~- 216 (351)
T PRK11445 144 ITARYLVGADGANSMVRRHLYPDHQIRKYVAIQQWFAEKH-PV---P-FYSCIFDNEIT-DCYSWSISKDGYFIFGGAY- 216 (351)
T ss_pred EEeCEEEECCCCCcHHhHHhcCCCchhhEEEEEEEecCCC-CC---C-CcceEEeccCC-CceEEEeCCCCcEEecccc-
Confidence 999999999999999999987642 122223322222211 11 1 11233444443 5799999998766554222
Q ss_pred cCCCcHHHHHHHHHHhhhc-ccCCCeEEeEEe-eecCCCCCCc--ccCCCEEEEccCCcCcccCCcccHHHHHHHHHHHH
Q 012488 277 THKGDIKKFQLATRNRAKD-KILGGKIIRVEA-HPIPEHPRPR--RLSGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCA 352 (462)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~-~~i~~~~~~~--~~~~~v~liGDAAh~~~P~~G~G~~~a~~da~~la 352 (462)
......+..+.+.+.+.. .+..+++..... ..+....... ...+|+++||||||.++|++|+|+++||+|+..|+
T Consensus 217 -~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvlVGDAAg~i~P~tG~Gi~~al~sa~~la 295 (351)
T PRK11445 217 -PMKDGRERFETLKEKLSAFGFQFGKPVKTEACTVLRPSRWQDFVCGKDNAFLIGEAAGFISPSSLEGISYALDSARILS 295 (351)
T ss_pred -cccchHHHHHHHHHHHHhcccccccccccccccccCcccccccccCCCCEEEEEcccCccCCccCccHHHHHHhHHHHH
Confidence 111222222222222211 111122222221 1111111122 33589999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCCChhHHHHHHHHHHHhhh
Q 012488 353 EAIIEGSENGTRMIDEGDLRKYLEKWDKTYW 383 (462)
Q Consensus 353 ~~l~~a~~~~~~~~~~~~L~~y~~~~~~~~~ 383 (462)
+.|.+. .+..++.|++.|+..+.
T Consensus 296 ~~l~~~--------~~~~~~~y~~~~~~~~~ 318 (351)
T PRK11445 296 EVLNKQ--------PEKLNTAYWRKTRKLRL 318 (351)
T ss_pred HHHHhc--------ccchHHHHHHHHHHHHH
Confidence 999753 24668888888887753
No 48
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=100.00 E-value=4.2e-29 Score=247.88 Aligned_cols=306 Identities=18% Similarity=0.149 Sum_probs=192.2
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceE-EEEcCCCceEeccCc
Q 012488 52 RVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKM-KMISPSNVAVDIGQT 130 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 130 (462)
||+||||||||+++|+.|++.|++|+|+|+++.....+.++++...++++++ +.+....+... .+..+.. ....
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~--- 75 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGL-ADCVEHVWPDVYEYRFPKQ-PRKL--- 75 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhch-hhHHhhcCCCceEEecCCc-chhc---
Confidence 7999999999999999999999999999998744344445555545555654 33333444432 2222211 1111
Q ss_pred ccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcceeEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCCC
Q 012488 131 LKPHEYIGMVRREVLDAYLRERAEKNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGAN 210 (462)
Q Consensus 131 ~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~ 210 (462)
... ...+++..|.+.|.+.+.+.|++++.+++.++.. ..++.+.|++.++ .+++|++||+|||.+
T Consensus 76 --~~~-~~~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~--~~~~~~~v~~~~g----------~~~~a~~VI~A~G~~ 140 (388)
T TIGR01790 76 --GTA-YGSVDSTRLHEELLQKCPEGGVLWLERKAIHAEA--DGVALSTVYCAGG----------QRIQARLVIDARGFG 140 (388)
T ss_pred --CCc-eeEEcHHHHHHHHHHHHHhcCcEEEccEEEEEEe--cCCceeEEEeCCC----------CEEEeCEEEECCCCc
Confidence 122 2258999999999999999999998777877762 3244566776665 689999999999999
Q ss_pred hHhhhhhcCCCCceEEEEEEEEecCCcccccccCeeEEEecCCCC--------CC--eEEEEEeCCCce-EEEEEeccC-
Q 012488 211 SRVAKSINAGDYDYAIAFQERVKIPDEKMVYYENLAEMYVGDDVS--------PD--FYGWVFPKCDHV-AVGTGTVTH- 278 (462)
Q Consensus 211 S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~--~~~w~~p~~~~~-~v~~~~~~~- 278 (462)
|.+++............+...+..+..... ++. .++++.... .. +|+|++|.++.. .++......
T Consensus 141 s~~~~~~~~~~~~~q~~~G~~~~~~~~~~~--~~~-~~~~d~~~~~~~~~~~~~~~~~f~~~lP~~~~~~~v~~~~~~~~ 217 (388)
T TIGR01790 141 PLVQYVRFPLNVGFQVAYGVEARLSRPPHG--PSS-MVIMDARVDQLAAPELKGYRPTFLYAMPLGSTRVFIEETSLADR 217 (388)
T ss_pred hhcccccCCCCceEEEEEEEEEEEcCCCCC--CCc-eEEEeccccccccccccCCCCceEEEeecCCCeEEEEeccccCC
Confidence 976543322211111122222232221111 111 112211111 12 289999987653 344332221
Q ss_pred -CCcHHHHHHHHHHhhhcc-cCCCeEEeEEeeecCCCCCCcccCCCEEEEccCCcCcccCCcccHHHHHHHHHHHHHHHH
Q 012488 279 -KGDIKKFQLATRNRAKDK-ILGGKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAII 356 (462)
Q Consensus 279 -~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~i~~~~~~~~~~~~v~liGDAAh~~~P~~G~G~~~a~~da~~la~~l~ 356 (462)
....+.+.+.+.+.+... +...++.+.....+|.........+|+++||||||.++|++|+|++.|++++..+++.|.
T Consensus 218 ~~~~~~~~~~~l~~~~~~~g~~~~~i~~~~~~~iP~~~~~~~~~~rv~liGdAAg~~~P~tG~Gi~~al~~a~~la~~l~ 297 (388)
T TIGR01790 218 PALPRDRLRQRILARLNAQGWQIKTIEEEEWGALPVGLPGPFLPQRVAAFGAAAGMVHPTTGYSVARALSDAPGLAAAIA 297 (388)
T ss_pred CCCCHHHHHHHHHHHHHHcCCeeeEEEeeeeEEEecccCCCccCCCeeeeechhcCcCCcccccHHHHHHHHHHHHHHHH
Confidence 223455666665544321 222344444445555533323467899999999999999999999999999999999999
Q ss_pred HHhhcCCCCCChhHHHHHHHHHHHhhhh
Q 012488 357 EGSENGTRMIDEGDLRKYLEKWDKTYWP 384 (462)
Q Consensus 357 ~a~~~~~~~~~~~~L~~y~~~~~~~~~~ 384 (462)
+++..+ ++..+..|.+.|+.....
T Consensus 298 ~~~~~~----~~~~~~~~~~~~~~~~~~ 321 (388)
T TIGR01790 298 QALCQS----SELATAAWDGLWPTERRR 321 (388)
T ss_pred HHhccC----HHHHHHHHHHhchHHHHH
Confidence 887553 356777787766665554
No 49
>PRK06847 hypothetical protein; Provisional
Probab=99.98 E-value=5.1e-30 Score=253.38 Aligned_cols=316 Identities=20% Similarity=0.236 Sum_probs=191.5
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccC-----ccccccCCCChhhHhc--ccceEEEEcCCC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIP-----LCMVGEFDLPLDIIDR--KVTKMKMISPSN 122 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~-----~~~l~~~g~~~~~~~~--~~~~~~~~~~~~ 122 (462)
..||+||||||+||++|+.|++.|++|+|+|+.+.. ...|.++. .+.|+++|+.+.+... ....+.++++.+
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~-~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g 82 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEW-RVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDG 82 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC-ccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCC
Confidence 569999999999999999999999999999998743 23454442 3467888887777654 244556666665
Q ss_pred ceEe-ccCc--c-cCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeE
Q 012488 123 VAVD-IGQT--L-KPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRT 197 (462)
Q Consensus 123 ~~~~-~~~~--~-~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 197 (462)
..+. +... . ........+.|..|.+.|.+.+++.|+++++++ |.+++. .++.+.+.+.+| .+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~---~~~~~~v~~~~g----------~~ 149 (375)
T PRK06847 83 TLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQ---DDDGVTVTFSDG----------TT 149 (375)
T ss_pred CEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEE---cCCEEEEEEcCC----------CE
Confidence 4331 1100 0 001112367899999999999999999999987 888873 334577777776 68
Q ss_pred EEecEEEecCCCChHhhhhhcCC--C--CceEEEEEEEEecCCcccccccCeeEEEecCCCCCCeEEEEEeCCCceEEEE
Q 012488 198 LEVDAVIGADGANSRVAKSINAG--D--YDYAIAFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGT 273 (462)
Q Consensus 198 ~~adlvI~AdG~~S~vr~~l~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p~~~~~~v~~ 273 (462)
+++|+||+|||.+|.+|+++... . +.....+...+..+.. . .. ..++.+. ++.+..+|..+......
T Consensus 150 ~~ad~vI~AdG~~s~~r~~l~~~~~~~~~~g~~~~~~~~~~~~~---~-~~-~~~~~~~----~~~~~~~p~~~~~~~~~ 220 (375)
T PRK06847 150 GRYDLVVGADGLYSKVRSLVFPDEPEPEYTGQGVWRAVLPRPAE---V-DR-SLMYLGP----TTKAGVVPLSEDLMYLF 220 (375)
T ss_pred EEcCEEEECcCCCcchhhHhcCCCCCceeccceEEEEEecCCCC---c-cc-eEEEeCC----CcEEEEEcCCCCeEEEE
Confidence 99999999999999999988432 1 2222233322222111 0 11 1233332 22344445543321111
Q ss_pred EeccCC----CcHHHHHHHHHHhhh-----------cccCCCeEEeEEeeecCCC-CCCcccCCCEEEEccCCcCcccCC
Q 012488 274 GTVTHK----GDIKKFQLATRNRAK-----------DKILGGKIIRVEAHPIPEH-PRPRRLSGRVALVGDAAGYVTKCS 337 (462)
Q Consensus 274 ~~~~~~----~~~~~~~~~~~~~~~-----------~~l~~~~~~~~~~~~i~~~-~~~~~~~~~v~liGDAAh~~~P~~ 337 (462)
...... ...+.+.+.+.+.+. +.+... ......++... ...+|..+|++|+|||||.++|+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~grv~LiGDAaH~~~P~~ 298 (375)
T PRK06847 221 VTEPRPDNPRIEPDTLAALLRELLAPFGGPVLQELREQITDD--AQVVYRPLETLLVPAPWHRGRVVLIGDAAHATTPHL 298 (375)
T ss_pred EeccCcccccCChHHHHHHHHHHHhhcCchHHHHHHHhcCCc--cceeeccHhhccCCCCccCCeEEEEechhccCCCCc
Confidence 111000 011122222222111 111111 11122233322 234688999999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhhhhHHHHHHHhHhhh
Q 012488 338 GEGIYFAAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVF 396 (462)
Q Consensus 338 G~G~~~a~~da~~la~~l~~a~~~~~~~~~~~~L~~y~~~~~~~~~~~~~~~~~~~~~~ 396 (462)
|||+|+||+||..|++.|.+. . ..+..|..|++.+...........+.+.+.+
T Consensus 299 GqG~n~aieDA~~La~~L~~~----~--~~~~al~~Y~~~R~~r~~~~~~~s~~~~~~~ 351 (375)
T PRK06847 299 AQGAGMAIEDAIVLAEELARH----D--SLEAALQAYYARRWERCRMVVEASARIGRIE 351 (375)
T ss_pred cccHHHHHHHHHHHHHHHhhC----C--cHHHHHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 999999999999999999641 1 2345666666666555555555544444443
No 50
>PRK07236 hypothetical protein; Provisional
Probab=99.98 E-value=4.7e-30 Score=254.19 Aligned_cols=317 Identities=19% Similarity=0.142 Sum_probs=176.9
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCccccc--C---ccccccCCCChhhH-hcccceEEEEcCCCc
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAI--P---LCMVGEFDLPLDII-DRKVTKMKMISPSNV 123 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i--~---~~~l~~~g~~~~~~-~~~~~~~~~~~~~~~ 123 (462)
.++|+||||||+||++|+.|+++|++|+||||.+.....+|.++ . .+.|+++|+.+... ........+++.++.
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g~ 85 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDGR 85 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCCC
Confidence 47999999999999999999999999999999874434555554 3 34677888765431 112223444554544
Q ss_pred eEeccCcccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecE
Q 012488 124 AVDIGQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDA 202 (462)
Q Consensus 124 ~~~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adl 202 (462)
.+... . ... ..+.+..+.+.|.+.+ .++++++++ |++++. +++.++|++.+| .+++||+
T Consensus 86 ~~~~~---~-~~~-~~~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~---~~~~v~v~~~~g----------~~~~ad~ 145 (386)
T PRK07236 86 VVQRR---P-MPQ-TQTSWNVLYRALRAAF--PAERYHLGETLVGFEQ---DGDRVTARFADG----------RRETADL 145 (386)
T ss_pred Eeecc---C-CCc-cccCHHHHHHHHHHhC--CCcEEEcCCEEEEEEe---cCCeEEEEECCC----------CEEEeCE
Confidence 32110 0 010 1245677777777544 246788888 999973 344588888887 6899999
Q ss_pred EEecCCCChHhhhhhcCC-C--CceEEEEEEEEe---cCCcccccccCeeEEEecCC-------CC-----------CCe
Q 012488 203 VIGADGANSRVAKSINAG-D--YDYAIAFQERVK---IPDEKMVYYENLAEMYVGDD-------VS-----------PDF 258 (462)
Q Consensus 203 vI~AdG~~S~vr~~l~~~-~--~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-------~~-----------~~~ 258 (462)
||+|||.+|.+|+++... . +.....|...+. .+............++.+.. .. ...
T Consensus 146 vIgADG~~S~vR~~l~~~~~~~~~g~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (386)
T PRK07236 146 LVGADGGRSTVRAQLLPDVRPTYAGYVAWRGLVDEAALPPEARAALRDRFTFQLGPGSHILGYPVPGEDGSTEPGKRRYN 225 (386)
T ss_pred EEECCCCCchHHHHhCCCCCCCcCCeEEEEEecchHHcCchhhhhcccceEEEEcCCceEEEEECCCCCCCcCCCCcEEE
Confidence 999999999999998543 2 222333433221 11110000001111111111 00 001
Q ss_pred EEEEEeCCCceEEE--EEe-----c----c----CCCcHHHHHHHHH----HhhhcccCCCeEEeEEeeecCCCCCCccc
Q 012488 259 YGWVFPKCDHVAVG--TGT-----V----T----HKGDIKKFQLATR----NRAKDKILGGKIIRVEAHPIPEHPRPRRL 319 (462)
Q Consensus 259 ~~w~~p~~~~~~v~--~~~-----~----~----~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~i~~~~~~~~~ 319 (462)
|.|..+........ ... . . .....+++.+... +.+.+.+.... ....+++.....++|.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 303 (386)
T PRK07236 226 WVWYRNAPAGEELDELLTDRDGTRRPFSVPPGALRDDVLAELRDDAAELLAPVFAELVEATA--QPFVQAIFDLEVPRMA 303 (386)
T ss_pred EEEEecCCCccchhhhcccCCCccccCCCCccccCHHHHHHHHHHHHHhcCHHHHHHHhhCc--CchhhhhhcccCcccc
Confidence 33333322100000 000 0 0 0001122222111 11222221111 0111223333456788
Q ss_pred CCCEEEEccCCcCcccCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhhhhHHHHHHHhH
Q 012488 320 SGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQ 393 (462)
Q Consensus 320 ~~~v~liGDAAh~~~P~~G~G~~~a~~da~~la~~l~~a~~~~~~~~~~~~L~~y~~~~~~~~~~~~~~~~~~~ 393 (462)
.+|++|+|||||.++|+.|||+|+||+||..|++.|.... + .....|..|++.++..........+.+.
T Consensus 304 ~grv~LiGDAAH~~~P~~GqG~n~aieDA~~La~~L~~~~---~--~~~~al~~Ye~~R~~r~~~~~~~s~~~~ 372 (386)
T PRK07236 304 FGRVALLGDAAFVARPHTAAGVAKAAADAVALAEALAAAA---G--DIDAALAAWEAERLAVGAAIVARGRRLG 372 (386)
T ss_pred cCcEEEEecccccCCCcchhhHHHHHHHHHHHHHHHHhcc---c--chHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999996531 1 1245566666655555554444444333
No 51
>PLN02697 lycopene epsilon cyclase
Probab=99.97 E-value=1.5e-28 Score=247.42 Aligned_cols=335 Identities=17% Similarity=0.154 Sum_probs=221.9
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEecc
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIG 128 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (462)
..+||+||||||||+++|+.|++.|++|+|+|+..+. .+.++++...++.+++.+ .+...+....++.+++.....+
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~--~~n~GvW~~~l~~lgl~~-~i~~~w~~~~v~~~~~~~~~~~ 183 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPF--TNNYGVWEDEFKDLGLED-CIEHVWRDTIVYLDDDKPIMIG 183 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccC--CCccccchhHHHhcCcHH-HHHhhcCCcEEEecCCceeecc
Confidence 3589999999999999999999999999999986533 344567766778888744 3444555555555554433221
Q ss_pred CcccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcceeEEEEecCCCCCCEE-EEEeccCCccCCCCceeEEEecEEEecC
Q 012488 129 QTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGLFMKMDLPRNFEQPYV-LYYTEYDGTKGGVGEKRTLEVDAVIGAD 207 (462)
Q Consensus 129 ~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~v~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~adlvI~Ad 207 (462)
..| ..++|..|.+.|.+++.+.|++++..+|+++.. . ++.+. +.+.++ .+++|++||+||
T Consensus 184 -----~~Y-g~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~--~-~~~~~vv~~~dG----------~~i~A~lVI~Ad 244 (529)
T PLN02697 184 -----RAY-GRVSRTLLHEELLRRCVESGVSYLSSKVDRITE--A-SDGLRLVACEDG----------RVIPCRLATVAS 244 (529)
T ss_pred -----Ccc-cEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEE--c-CCcEEEEEEcCC----------cEEECCEEEECC
Confidence 222 258999999999999999999997666888872 2 23333 345555 689999999999
Q ss_pred CCChHhhhhhcC----CCCceEEEEEEEEecCCcccccccCeeEEEecCC------------CCCCeEEEEEeCCCce-E
Q 012488 208 GANSRVAKSINA----GDYDYAIAFQERVKIPDEKMVYYENLAEMYVGDD------------VSPDFYGWVFPKCDHV-A 270 (462)
Q Consensus 208 G~~S~vr~~l~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~w~~p~~~~~-~ 270 (462)
|.+|. +.+.. ....+...+...+.+.... +.++. .++++.. -.| .|.|++|.++.. .
T Consensus 245 G~~S~--rl~~~~~~~~~~~~Q~a~Gi~ve~~~~~--~d~~~-~vlMD~r~~~~~~~~~~~~~~p-~FlYvlP~~~~~~~ 318 (529)
T PLN02697 245 GAASG--RLLQYEVGGPRVCVQTAYGVEVEVENNP--YDPSL-MVFMDYRDYFKEKVSHLEAEYP-TFLYAMPMSSTRVF 318 (529)
T ss_pred CcChh--hhhccccCCCCcccEEEEEEEEEecCCC--CCcch-heeeccccccccccccccCCCc-eEEEEeecCCCeEE
Confidence 99993 22221 1122223333333332211 11221 1222211 012 489999998765 4
Q ss_pred EEEEeccCC--CcHHHHHHHHHHhhhcc-cCCCeEEeEEeeecCCC-CCCcccCCCEEEEccCCcCcccCCcccHHHHHH
Q 012488 271 VGTGTVTHK--GDIKKFQLATRNRAKDK-ILGGKIIRVEAHPIPEH-PRPRRLSGRVALVGDAAGYVTKCSGEGIYFAAK 346 (462)
Q Consensus 271 v~~~~~~~~--~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~i~~~-~~~~~~~~~v~liGDAAh~~~P~~G~G~~~a~~ 346 (462)
+...+.... .+.+.+.+.+..++... +...++.+.....+|.. +.+.. .++++++||||+.++|.+|.|+..++.
T Consensus 319 VE~T~l~~~~~l~~~~l~~~L~~~l~~~Gi~~~~i~~~E~g~iPm~g~~~~~-~~~vl~vG~AAG~vhPsTGy~v~~~l~ 397 (529)
T PLN02697 319 FEETCLASKDAMPFDLLKKRLMSRLETMGIRILKTYEEEWSYIPVGGSLPNT-EQKNLAFGAAASMVHPATGYSVVRSLS 397 (529)
T ss_pred EEEeeeccCCCCCHHHHHHHHHHHHHhCCCCcceEEEEEeeeecCCCCCccc-CCCeeEeehhhcCCCCchhhhHHHHHH
Confidence 422222222 24466666666655432 33356677777777774 33333 688999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCC-------CCCChhHHHHHHHHHHHhhhhHHHHHHHhHhhhcc-CchhHHHHHHHhcc
Q 012488 347 SGRMCAEAIIEGSENGT-------RMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYR-SNPAREAFVEMCAD 412 (462)
Q Consensus 347 da~~la~~l~~a~~~~~-------~~~~~~~L~~y~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 412 (462)
+|..+|+.|.++++.++ ...+...++.|++.|..++++..........++.. ++...+.|++.+-+
T Consensus 398 ~A~~~A~~ia~~l~~~~~~~~~~~~~~~~~~l~~~~~lw~~e~~r~~~~~~~g~~~l~~l~~~~~~~ff~~ff~ 471 (529)
T PLN02697 398 EAPKYASVIARILKNVSSGGKLGTSNSSNISMQAWNTLWPQERKRQRAFFLFGLALILQLDTEGIRTFFVTFFR 471 (529)
T ss_pred hHHHHHHHHHHHhhCCccccccccccchHHHHHHHHHhChHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHC
Confidence 99999999999998664 12467788899999999888877766555555544 44456666665543
No 52
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=99.97 E-value=6.3e-30 Score=255.64 Aligned_cols=324 Identities=18% Similarity=0.159 Sum_probs=184.6
Q ss_pred ccEEEECCchHHHHHHHHHHHCC-CcEEEEcCCCCCCCCcccccC-----ccccccCCCChhhHhccc------ceEEEE
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNG-VETFLIERKLDNCKPCGGAIP-----LCMVGEFDLPLDIIDRKV------TKMKMI 118 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g-~~v~v~E~~~~~~~~~g~~i~-----~~~l~~~g~~~~~~~~~~------~~~~~~ 118 (462)
++|+||||||+||++|+.|+++| ++|+||||.+.. ..+|.++. .+.|+++|+.+.+..... ....+.
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~-~~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~ 79 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAF-GEVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFE 79 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcC-CCCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEE
Confidence 37999999999999999999998 699999998743 35676663 346788888766643221 111111
Q ss_pred cCCCceE-eccCcccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCcee
Q 012488 119 SPSNVAV-DIGQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKR 196 (462)
Q Consensus 119 ~~~~~~~-~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 196 (462)
..++... ..+....+......++|..|.+.|.+.+.. ..+++++ |++++. .++.+.|++.++ .
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~--~~v~~~~~v~~i~~---~~~~~~v~~~~g----------~ 144 (414)
T TIGR03219 80 WRNGSDASYLGATIAPGVGQSSVHRADFLDALLKHLPE--GIASFGKRATQIEE---QAEEVQVLFTDG----------T 144 (414)
T ss_pred EEecCccceeeeeccccCCcccCCHHHHHHHHHHhCCC--ceEEcCCEEEEEEe---cCCcEEEEEcCC----------C
Confidence 1111100 011000111111257899999999887643 4577777 888872 344588888877 6
Q ss_pred EEEecEEEecCCCChHhhhhhcCC--------CCceEEEEEEEEecCCcccc-----cc---cCeeEEEecCCCCCCeEE
Q 012488 197 TLEVDAVIGADGANSRVAKSINAG--------DYDYAIAFQERVKIPDEKMV-----YY---ENLAEMYVGDDVSPDFYG 260 (462)
Q Consensus 197 ~~~adlvI~AdG~~S~vr~~l~~~--------~~~~~~~~~~~~~~~~~~~~-----~~---~~~~~~~~~~~~~~~~~~ 260 (462)
++++|+||+|||.+|.+|+.+... .+.....|+..+........ .. .+...++.+ +++++
T Consensus 145 ~~~ad~vVgADG~~S~vR~~l~~~~~~~~~~p~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 220 (414)
T TIGR03219 145 EYRCDLLIGADGIKSALRDYVLQGQGQAPVRPRFSGTCAYRGLVDSLQLREAYRAAGLDEHLVDVPQMYLG----LDGHI 220 (414)
T ss_pred EEEeeEEEECCCccHHHHHHhcCccCCCCCCccccCcEEEEEEeeHHHHhhhhccccccccccccceEEEc----CCCeE
Confidence 899999999999999999988521 22223444433321110000 00 011123333 23345
Q ss_pred EEEeCCCceEE--EEEecc---------------CCCcHHHHHHHHHH---hhhcccCCCeEEeEEeeecCC-CCCCccc
Q 012488 261 WVFPKCDHVAV--GTGTVT---------------HKGDIKKFQLATRN---RAKDKILGGKIIRVEAHPIPE-HPRPRRL 319 (462)
Q Consensus 261 w~~p~~~~~~v--~~~~~~---------------~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~i~~-~~~~~~~ 319 (462)
+.+|..+...+ ...... .....+++.+.+.. .+.+.+...+ ....+.+.. .+.++|+
T Consensus 221 ~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~w~ 298 (414)
T TIGR03219 221 LTFPVRQGRLINVVAFISDRSQPKPTWPSDTPWVREATQREMLDAFAGWGDAARALLECIP--APTLWALHDLAELPGYV 298 (414)
T ss_pred EEEECCCCcEEEEEEEEcCcccccCCCCCCCcccCccCHHHHHHHhcCCCHHHHHHHHhCC--CCCceeeeeccccccee
Confidence 55665443211 111000 01112233332211 1111111110 011122222 2456788
Q ss_pred CCCEEEEccCCcCcccCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhhhhHHHHHHHhHhhhcc
Q 012488 320 SGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFYR 398 (462)
Q Consensus 320 ~~~v~liGDAAh~~~P~~G~G~~~a~~da~~la~~l~~a~~~~~~~~~~~~L~~y~~~~~~~~~~~~~~~~~~~~~~~~ 398 (462)
.+|++|+|||||.+.|+.|||+|+||+||..|++.|......+. .-+..|..|++.++.......+....+.+++..
T Consensus 299 ~grv~LiGDAAH~m~P~~GqGa~~AieDA~~La~~L~~~~~~~~--~~~~al~~Ye~~R~~r~~~~~~~s~~~~~~~~~ 375 (414)
T TIGR03219 299 HGRVALIGDAAHAMLPHQGAGAGQGLEDAYFLARLLGDTELEAG--DLPALLEAYDDVRRPRACRVQRTSREAGELYEL 375 (414)
T ss_pred eCcEEEEEcccCCCCCCcCcchHhHHHHHHHHHHHHHhhccCcc--hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999976432221 124455555555555555555555555544443
No 53
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=99.97 E-value=7.8e-30 Score=238.47 Aligned_cols=291 Identities=22% Similarity=0.243 Sum_probs=159.4
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccC-----ccccccCCCChhhHhcccc--eE-EEEcCC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIP-----LCMVGEFDLPLDIIDRKVT--KM-KMISPS 121 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~-----~~~l~~~g~~~~~~~~~~~--~~-~~~~~~ 121 (462)
+.+|+|||||++||++|+.|.|.|++|+|+|+.... +..|..+. .++|+.+++.+.+....++ +. -....+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~-R~~g~si~L~~ng~~aLkai~~~e~i~~~gip~~~~v~~~~~s 80 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP-RGEGTSINLALNGWRALKAIGLKEQIREQGIPLGGRVLIHGDS 80 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc-ccCCcceeehhhHHHHHHHcccHHHHHHhcCcccceeeeecCC
Confidence 358999999999999999999999999999996532 33355553 3467888877777665443 11 223334
Q ss_pred CceEeccCcccCCCeEEeeehHHHHHHHHHHHHHCC-CEEEcce-----eEEEEecCCCCCCEEEEEeccCCccCCCCce
Q 012488 122 NVAVDIGQTLKPHEYIGMVRREVLDAYLRERAEKNG-ASVINGL-----FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEK 195 (462)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~g-v~i~~~~-----v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 195 (462)
|....--....+..+...+.|+.+.+.+...+...+ +++.... ...++ ......++++.+|
T Consensus 81 g~~~~~~~~~~~~~~i~r~~~r~ll~~lL~~a~~~~~ikf~~~~~~~~~~~~~~---~~~~~~~v~l~~g---------- 147 (420)
T KOG2614|consen 81 GKEVSRILYGEPDEYILRINRRNLLQELLAEALPTGTIKFHSNLSCTSKDVEIE---TLGKKLVVHLSDG---------- 147 (420)
T ss_pred CCeeEecccCCchHHHHHHHHHHHHHHHHHhhcCCCeeecccccccccccceee---ecccccceecCCC----------
Confidence 442211111122333233444444444444444443 3333211 22222 1222345566665
Q ss_pred eEEEecEEEecCCCChHhhhhhcCC--CCceEEEEEEEEecCCcccccccCeeEEEecCCCCCCeEEEEEeCCCceEEEE
Q 012488 196 RTLEVDAVIGADGANSRVAKSINAG--DYDYAIAFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGT 273 (462)
Q Consensus 196 ~~~~adlvI~AdG~~S~vr~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p~~~~~~v~~ 273 (462)
.++++|++|+|||++|.||++++.. .+.+..+|.....++.... + ....+.. .....+.|..|......+..
T Consensus 148 ~~~~~dlligCDGa~S~Vr~~l~~~~p~~~~~~ayrg~~~~~~~~~-~---~~~vf~~--~~~~~~~~~~~~~~~~~y~~ 221 (420)
T KOG2614|consen 148 TTVKGDLLIGCDGAYSKVRKWLGFKEPRYDGSQAYRGLGFIPNGIP-F---GKKVFAI--YGNGLHSWPRPGFHLIAYWF 221 (420)
T ss_pred cEEEeeEEEEcCchHHHHHHHhcccCCcceeEEEEeeeeeccCCCC-c---ccceecc--cCCeEEEcccCCceEEEEEe
Confidence 8999999999999999999999876 4555666665443332211 1 0111111 11122333332222211110
Q ss_pred E-------eccCCCcHH-------HHHHHHHHhhhcccCCCeEEeEEeeecCCCC-----CCcccCCCEEEEccCCcCcc
Q 012488 274 G-------TVTHKGDIK-------KFQLATRNRAKDKILGGKIIRVEAHPIPEHP-----RPRRLSGRVALVGDAAGYVT 334 (462)
Q Consensus 274 ~-------~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~-----~~~~~~~~v~liGDAAh~~~ 334 (462)
- ......+.+ +..+.+.+.+.+.+.-.........++..++ ..+...++++|+|||||.|.
T Consensus 222 ~~k~~t~t~~~~~~e~~~l~~~~~~v~~~~~en~~d~i~~~~~e~i~~t~l~~r~p~~~i~~~~s~~~vvL~GDAaHaM~ 301 (420)
T KOG2614|consen 222 LDKSLTSTDFAPFDEPEKLKKTSLEVVDFFPENFPDIIELTGEESIVRTPLADRPPWPLISVKCSPGNVVLLGDAAHAMT 301 (420)
T ss_pred ecCCcccccccCcCCHHHHhhhHHHHHHHhHHhHHHHHHhcChHHhhhchhhhcCCcCeeeeccCCCeEEEecccccccC
Confidence 0 011111111 1122222222222211111111111122211 12234458999999999999
Q ss_pred cCCcccHHHHHHHHHHHHHHHHHHhh
Q 012488 335 KCSGEGIYFAAKSGRMCAEAIIEGSE 360 (462)
Q Consensus 335 P~~G~G~~~a~~da~~la~~l~~a~~ 360 (462)
|+.|||+|.||+|+..|+++|.++.+
T Consensus 302 Pf~GQG~n~a~ED~~VLa~~L~~~~~ 327 (420)
T KOG2614|consen 302 PFLGQGGNCAFEDCVVLAECLDEAIN 327 (420)
T ss_pred CcccccccchHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999875
No 54
>PLN02463 lycopene beta cyclase
Probab=99.97 E-value=7.7e-28 Score=239.04 Aligned_cols=294 Identities=17% Similarity=0.175 Sum_probs=193.4
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEecc
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIG 128 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (462)
..+||+||||||||+++|+.|+++|++|+|+|+.+....++..+++...++.+++.+.+.. .+....++..++....
T Consensus 27 ~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~-~w~~~~v~~~~~~~~~-- 103 (447)
T PLN02463 27 RVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDT-TWPGAVVYIDDGKKKD-- 103 (447)
T ss_pred cCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHh-hCCCcEEEEeCCCCcc--
Confidence 3589999999999999999999999999999998743345556666666777887554433 3333333322221111
Q ss_pred CcccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcceeEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCC
Q 012488 129 QTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADG 208 (462)
Q Consensus 129 ~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG 208 (462)
....| ..++|..|.+.|.+++.+.|++++..+|.+++. .++.+.|++.+| .+++||+||+|||
T Consensus 104 ---~~~~y-~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~---~~~~~~V~~~dG----------~~i~A~lVI~AdG 166 (447)
T PLN02463 104 ---LDRPY-GRVNRKKLKSKMLERCIANGVQFHQAKVKKVVH---EESKSLVVCDDG----------VKIQASLVLDATG 166 (447)
T ss_pred ---ccCcc-eeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEE---cCCeEEEEECCC----------CEEEcCEEEECcC
Confidence 11222 358999999999999999999998767888873 344577888776 7899999999999
Q ss_pred CChHhhhhhcCCCCceEEEEEEEEecCCcccccc----cCeeEEE--------ecCCCCCCeEEEEEeCCCc-eEEEEEe
Q 012488 209 ANSRVAKSINAGDYDYAIAFQERVKIPDEKMVYY----ENLAEMY--------VGDDVSPDFYGWVFPKCDH-VAVGTGT 275 (462)
Q Consensus 209 ~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~--------~~~~~~~~~~~w~~p~~~~-~~v~~~~ 275 (462)
.+|.+++.-......+...+...+++........ -++.... ......| .|.|.+|.++. ..++.+.
T Consensus 167 ~~s~l~~~~~~~~~g~Q~a~Gi~~ev~~~p~d~~~~vlMD~r~~~~~~~~~~~~~~~~~p-~FlY~~P~~~~~~~vEeT~ 245 (447)
T PLN02463 167 FSRCLVQYDKPFNPGYQVAYGILAEVDSHPFDLDKMLFMDWRDSHLGNNPELRARNSKLP-TFLYAMPFSSNRIFLEETS 245 (447)
T ss_pred CCcCccCCCCCCCccceeeeeEEeecCCCCcccccchhhhcChhhccccchhhhccCCCC-ceEEEEecCCCeEEEEeee
Confidence 9998765322111222223322233222211110 0000000 0111113 38999999876 4555554
Q ss_pred ccCC--CcHHHHHHHHHHhhhc-ccCCCeEEeEEeeecCCCCCCcccCCCEEEEccCCcCcccCCcccHHHHHHHHHHHH
Q 012488 276 VTHK--GDIKKFQLATRNRAKD-KILGGKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCA 352 (462)
Q Consensus 276 ~~~~--~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~i~~~~~~~~~~~~v~liGDAAh~~~P~~G~G~~~a~~da~~la 352 (462)
.... ...+.+.+.+.+++.. .+...++.+.....+|.....+...+|++++||||+.++|.+|.|+..++..+..+|
T Consensus 246 l~s~~~~~~~~lk~~L~~~l~~~Gi~~~~i~~~E~~~IPmg~~~~~~~~~~~~~G~aag~v~p~tG~~i~~~~~~~~~~a 325 (447)
T PLN02463 246 LVARPGLPMDDIQERMVARLRHLGIKVKSVEEDEKCVIPMGGPLPVIPQRVLGIGGTAGMVHPSTGYMVARTLAAAPIVA 325 (447)
T ss_pred eecCCCCCHHHHHHHHHHHHHHCCCCcceeeeeeeeEeeCCCCCCCCCCCEEEecchhcCcCCCccccHHHHHHHHHHHH
Confidence 3322 2445666666665442 123345666666667775443345679999999999999999999999999999999
Q ss_pred HHHHHHhhcCC
Q 012488 353 EAIIEGSENGT 363 (462)
Q Consensus 353 ~~l~~a~~~~~ 363 (462)
+++.++++.+.
T Consensus 326 ~~~~~~~~~~~ 336 (447)
T PLN02463 326 DAIVEYLGSSR 336 (447)
T ss_pred HHHHHHHhcCC
Confidence 99999998664
No 55
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=99.97 E-value=7.1e-29 Score=253.56 Aligned_cols=316 Identities=17% Similarity=0.186 Sum_probs=173.7
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcc---ccc--C---ccccccCCCC--hhhHhcccc---e
Q 012488 48 NRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCG---GAI--P---LCMVGEFDLP--LDIIDRKVT---K 114 (462)
Q Consensus 48 ~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g---~~i--~---~~~l~~~g~~--~~~~~~~~~---~ 114 (462)
.++++|+||||||+||++|+.|+++|++|+||||++...+..| .++ + .++|+++|+. +++...... .
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~ 158 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDR 158 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCcccce
Confidence 3458999999999999999999999999999999863222222 223 2 3467888753 344332211 1
Q ss_pred E-EEEc-CCCce-EeccC--cc--cCCCeEEeeehHHHHHHHHHHHHHCCC-EEEcce-eEEEEecCCCCCCEEEEEecc
Q 012488 115 M-KMIS-PSNVA-VDIGQ--TL--KPHEYIGMVRREVLDAYLRERAEKNGA-SVINGL-FMKMDLPRNFEQPYVLYYTEY 185 (462)
Q Consensus 115 ~-~~~~-~~~~~-~~~~~--~~--~~~~~~~~v~r~~l~~~L~~~~~~~gv-~i~~~~-v~~~~~~~~~~~~~~v~~~~~ 185 (462)
+ .+.+ ..+.. ..+.. .. ...++...++|..|++.|.+.+ +. .+++++ |++++. .++.+++++.+|
T Consensus 159 i~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~al---g~~~i~~g~~V~~I~~---~~d~VtV~~~dG 232 (668)
T PLN02927 159 INGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILARAV---GEDVIRNESNVVDFED---SGDKVTVVLENG 232 (668)
T ss_pred eeeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHhhC---CCCEEEcCCEEEEEEE---eCCEEEEEECCC
Confidence 1 1122 12221 12111 00 1123345789999999997654 33 356676 888872 345688888776
Q ss_pred CCccCCCCceeEEEecEEEecCCCChHhhhhhcCC---CCceEEEEEEEEecCCcccccccCeeEEEecCCCCCCeEEEE
Q 012488 186 DGTKGGVGEKRTLEVDAVIGADGANSRVAKSINAG---DYDYAIAFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWV 262 (462)
Q Consensus 186 ~~~~~~~~~~~~~~adlvI~AdG~~S~vr~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~ 262 (462)
.++++|+||+|||.+|.+|+.+... .+.....|...+........ ......+.+.. .++..
T Consensus 233 ----------~ti~aDlVVGADG~~S~vR~~l~g~~~~~~sG~~~~rgi~~~~p~~~~--~~~~~~~~G~~----~~~v~ 296 (668)
T PLN02927 233 ----------QRYEGDLLVGADGIWSKVRNNLFGRSEATYSGYTCYTGIADFIPADIE--SVGYRVFLGHK----QYFVS 296 (668)
T ss_pred ----------CEEEcCEEEECCCCCcHHHHHhcCCCCCcccceEEEEEEcCCCccccc--ccceEEEEcCC----eEEEE
Confidence 6889999999999999999998543 23333444333332211110 00011222221 11111
Q ss_pred EeCCCc-eE-EEEEec-----cCC-CcHHHHHHHHHH---hhhcccCCCeEEeEEeeecCC-CCCCcccCCCEEEEccCC
Q 012488 263 FPKCDH-VA-VGTGTV-----THK-GDIKKFQLATRN---RAKDKILGGKIIRVEAHPIPE-HPRPRRLSGRVALVGDAA 330 (462)
Q Consensus 263 ~p~~~~-~~-v~~~~~-----~~~-~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~i~~-~~~~~~~~~~v~liGDAA 330 (462)
.|..+. .. +..... ... ...+++.+.+.. .+.+.+..........+.+.. .+..+|..+|++|+||||
T Consensus 297 ~~v~~g~~~~~~f~~~p~~~~~~~~~~~e~L~~~f~~w~~~v~elI~~t~~~~i~~~~iyd~~p~~~W~~grVvLiGDAA 376 (668)
T PLN02927 297 SDVGGGKMQWYAFHEEPAGGADAPNGMKKRLFEIFDGWCDNVLDLLHATEEDAILRRDIYDRSPGFTWGKGRVTLLGDSI 376 (668)
T ss_pred EcCCCCeEEEEEEEECCccccccchhHHHHHHHHhccCCHHHHHHHHhCccccceeeeEEeccCCCccccCcEEEEcCcc
Confidence 222111 10 000000 001 112222222221 122222111100111122222 234578899999999999
Q ss_pred cCcccCCcccHHHHHHHHHHHHHHHHHHhhcC----CCCCChhHHHHHHHHHHHhhhhH
Q 012488 331 GYVTKCSGEGIYFAAKSGRMCAEAIIEGSENG----TRMIDEGDLRKYLEKWDKTYWPT 385 (462)
Q Consensus 331 h~~~P~~G~G~~~a~~da~~la~~l~~a~~~~----~~~~~~~~L~~y~~~~~~~~~~~ 385 (462)
|.++|+.|||.|+||+||..|++.|..+.... ........|..|++.++......
T Consensus 377 H~~~P~~GqG~n~AieDa~~La~~L~~~~~~~~~~~~~~~~~~aL~~Ye~~R~~rv~~i 435 (668)
T PLN02927 377 HAMQPNMGQGGCMAIEDSFQLALELDEAWKQSVETNTPVDVVSSLKRYEESRRLRVAII 435 (668)
T ss_pred CCCCCccccchHHHHHHHHHHHHHHHHhhccccccCCcccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998875321 11112345555555554444333
No 56
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=99.95 E-value=6.7e-26 Score=226.63 Aligned_cols=312 Identities=21% Similarity=0.268 Sum_probs=179.5
Q ss_pred cEEEECCchHHHHHHHHHHHCC---CcEEEEcCCCCCCCCcccccCc---cccccCCCChh--hHhccc---ceEEEEcC
Q 012488 52 RVAVIGGGPAGGAAAETLAKNG---VETFLIERKLDNCKPCGGAIPL---CMVGEFDLPLD--IIDRKV---TKMKMISP 120 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g---~~v~v~E~~~~~~~~~g~~i~~---~~l~~~g~~~~--~~~~~~---~~~~~~~~ 120 (462)
||+|||||+||.++|..|++.+ ++|+|||+........|++..+ ..++.+|+.+. +.+... .++++.+.
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~~~~vGe~~~p~~~~~~~~lgi~e~~~~~~~~~~~k~g~~f~~w 80 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIPRIGVGESTLPSLRPFLRRLGIDEADFMRACDATFKLGIRFVNW 80 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS---SSEEE--THHHHCHHHHT--HHHHCHHCT-EEESEEEEESS
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCCCccccchHHHHHHHHHcCCChHHHHHHhCCeEeccEEeeec
Confidence 7999999999999999999998 9999999998555677877654 35677888776 222211 12333221
Q ss_pred C--Cce--EeccC-----------------------------------------------cccCCCeEEeeehHHHHHHH
Q 012488 121 S--NVA--VDIGQ-----------------------------------------------TLKPHEYIGMVRREVLDAYL 149 (462)
Q Consensus 121 ~--~~~--~~~~~-----------------------------------------------~~~~~~~~~~v~r~~l~~~L 149 (462)
. +.. ..++. ......+.++++|..|+++|
T Consensus 81 ~~~~~~~~~~f~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ayhlDR~~fd~~L 160 (454)
T PF04820_consen 81 GERGESYFHPFGSYGPPIDGVDFHHYWLRLRAAGFDGPFSDFSLSAALAKQGRFAPPPEDFLSPFNYAYHLDRAKFDQFL 160 (454)
T ss_dssp SSCCSEEEEESS---TEETTEEHHHHHHHHHHTTCCSHHHHHHHCHHHHHHTTBTSB-TTSTBTSS-EEEEEHHHHHHHH
T ss_pred CCCCCceEeeccccCCCCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHccCCCCCcccccCCCCeeEEEeHHHHHHHH
Confidence 1 100 01100 01124567799999999999
Q ss_pred HHHHHHCCCEEEcceeEEEEecCCCCCC-EEEEEeccCCccCCCCceeEEEecEEEecCCCChHhhhhh-cCC--CCc--
Q 012488 150 RERAEKNGASVINGLFMKMDLPRNFEQP-YVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSRVAKSI-NAG--DYD-- 223 (462)
Q Consensus 150 ~~~~~~~gv~i~~~~v~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S~vr~~l-~~~--~~~-- 223 (462)
++.|.+.||+++.++|+++.. ++++. ..|.+.+| .+++||++|+|+|.+|.+.++. ... .+.
T Consensus 161 ~~~A~~~Gv~~~~g~V~~v~~--~~~g~i~~v~~~~g----------~~i~ad~~IDASG~~s~L~~~~L~~~~~~~~~~ 228 (454)
T PF04820_consen 161 RRHAEERGVEVIEGTVVDVEL--DEDGRITAVRLDDG----------RTIEADFFIDASGRRSLLARKALKVGFRDWSDW 228 (454)
T ss_dssp HHHHHHTT-EEEET-EEEEEE---TTSEEEEEEETTS----------EEEEESEEEE-SGGG-CCCCCCT-EEEEEETTT
T ss_pred HHHHhcCCCEEEeCEEEEEEE--cCCCCEEEEEECCC----------CEEEEeEEEECCCccchhhHhhhcCCCcccccc
Confidence 999999999999999888874 33333 34666666 7999999999999999987774 211 111
Q ss_pred --eEEEEEEEEecCCcccccccCeeEEEecCCCCCCeEEEEEeCCCceEEEEEeccCCCcHHHHHHHHHHhhhcccCC-C
Q 012488 224 --YAIAFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKGDIKKFQLATRNRAKDKILG-G 300 (462)
Q Consensus 224 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~ 300 (462)
...++...+...+ .. ....... ..+.||.|.+|..++...|..........++-.+.+.+.+...... .
T Consensus 229 L~~d~av~~~~~~~~---~~-~~~T~~~----a~~~GW~W~IPL~~~~~~G~V~s~~~~s~~~A~~~l~~~l~~~~~~~~ 300 (454)
T PF04820_consen 229 LPNDRAVAVQVPNED---PP-EPYTRST----AFEAGWIWYIPLQNRRGSGYVYSSDFISDDEAEAELLAYLGGSPEAEP 300 (454)
T ss_dssp CEEEEEEEEEEE-SS---CT-TSSEEEE----EESSEEEEEEEESSEEEEEEEEETTTSHHHHHHHHHHHHHTCHCTTSC
T ss_pred ccccEEEEEecCcCC---CC-CCceeEE----ecCCceEEEccCCCcceEEEEeccccCCHHHHHHHHHHhcchhhhcch
Confidence 1112211222111 11 1111111 2357899999999887666554333332233333333333322211 1
Q ss_pred eEEeEEeeecCCCCCCcccCCCEEEEccCCcCcccCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHH
Q 012488 301 KIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDK 380 (462)
Q Consensus 301 ~~~~~~~~~i~~~~~~~~~~~~v~liGDAAh~~~P~~G~G~~~a~~da~~la~~l~~a~~~~~~~~~~~~L~~y~~~~~~ 380 (462)
..+.... ....+...+|+++|||||++++|+.+.|+.+++..+..+++.|. ..+ .++..+.+|++.++.
T Consensus 301 ~~i~~~~-----g~~~~~~~~n~vavGdAAgFiDPL~StGI~la~~aa~~l~~~l~----~~~--~~~~~~~~Yn~~~~~ 369 (454)
T PF04820_consen 301 RHIRFRS-----GRRKQFWGKNCVAVGDAAGFIDPLESTGIHLALSAAEALAEALP----DDD--FSPAALDRYNRRMRR 369 (454)
T ss_dssp EEEE-S------EEESSSEETTEEE-CCCTEE--GGGSHHHHHHHHHHHHHHHTHH----CTT--CCHHHHHHHHHHHHH
T ss_pred hhhcccc-----cchhhcccCCEEEEcchhhccCccccccHHHHHHHHHHHHHhcc----cCC--CCHHHHHHHHHHHHH
Confidence 2222222 22455667899999999999999999999999996666555553 333 456777788877777
Q ss_pred hhhhHHHHHHHhHh
Q 012488 381 TYWPTYKVLDVLQK 394 (462)
Q Consensus 381 ~~~~~~~~~~~~~~ 394 (462)
.+......+...+.
T Consensus 370 ~~~~~~~fi~~hY~ 383 (454)
T PF04820_consen 370 EYERIRDFISLHYQ 383 (454)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 76655544444333
No 57
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.94 E-value=7.5e-24 Score=208.07 Aligned_cols=277 Identities=19% Similarity=0.263 Sum_probs=190.8
Q ss_pred cEEEECCchHHHHHHHHH--HHCCCcEEEEcCCCCC--CCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEec
Q 012488 52 RVAVIGGGPAGGAAAETL--AKNGVETFLIERKLDN--CKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDI 127 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L--~~~g~~v~v~E~~~~~--~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (462)
||+||||||||+++|+.| ++.|.+|+|+|+++.. ...+.|+.+. ..++..++++...+....+..+.......
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~---~~~~~~~~~v~~~w~~~~v~~~~~~~~~~ 77 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWE---KDLGPLDSLVSHRWSGWRVYFPDGSRILI 77 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCccccccc---ccccchHHHHheecCceEEEeCCCceEEc
Confidence 899999999999999999 7789999999998744 4455555543 33333567777778888777766554322
Q ss_pred cCcccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcceeEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecC
Q 012488 128 GQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGAD 207 (462)
Q Consensus 128 ~~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~Ad 207 (462)
...| .++++..|++.|.+++...|+.++...|.+++. .++.+.|.+.+| .+++|++||+|+
T Consensus 78 -----~~~Y-~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~---~~~~~~v~~~~g----------~~i~a~~VvDa~ 138 (374)
T PF05834_consen 78 -----DYPY-CMIDRADFYEFLLERAAAGGVIRLNARVTSIEE---TGDGVLVVLADG----------RTIRARVVVDAR 138 (374)
T ss_pred -----ccce-EEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEe---cCceEEEEECCC----------CEEEeeEEEECC
Confidence 1233 379999999999999996666666666999882 333577788887 799999999999
Q ss_pred CCChHhhhhhcCCCCceEEEEEEEEecCCcccccccCee---EEEecCCCCCCeEEEEEeCCCce-EEEEEeccCCC--c
Q 012488 208 GANSRVAKSINAGDYDYAIAFQERVKIPDEKMVYYENLA---EMYVGDDVSPDFYGWVFPKCDHV-AVGTGTVTHKG--D 281 (462)
Q Consensus 208 G~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~w~~p~~~~~-~v~~~~~~~~~--~ 281 (462)
|..+...+..+ ++...++.. ...... +.++.. .+...+...+..|.|++|..++. .+..+...... +
T Consensus 139 g~~~~~~~~~~---~Q~f~G~~v--~~~~~~--f~~~~~~lMD~r~~~~~~~~~F~Y~lP~~~~~alvE~T~fs~~~~~~ 211 (374)
T PF05834_consen 139 GPSSPKARPLG---LQHFYGWEV--ETDEPV--FDPDTATLMDFRVPQSADGPSFLYVLPFSEDRALVEETSFSPRPALP 211 (374)
T ss_pred Ccccccccccc---cceeEEEEE--eccCCC--CCCCceEEEEecccCCCCCceEEEEEEcCCCeEEEEEEEEcCCCCCC
Confidence 97776322222 233333332 222221 222222 22222221344699999998664 45555554443 5
Q ss_pred HHHHHHHHHHhhhc-ccCCCeEEeEEeeecCC--CCCCcccCCCEEEEccCCcCcccCCcccHHHHHHHHHHHHHHHHH
Q 012488 282 IKKFQLATRNRAKD-KILGGKIIRVEAHPIPE--HPRPRRLSGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIIE 357 (462)
Q Consensus 282 ~~~~~~~~~~~~~~-~l~~~~~~~~~~~~i~~--~~~~~~~~~~v~liGDAAh~~~P~~G~G~~~a~~da~~la~~l~~ 357 (462)
.+.+.+.+.+++.. .+...++.+.....||. ....+...++++.+|+|++.++|.+|.++..+.+.+..+|+.|.+
T Consensus 212 ~~~~~~~l~~~l~~~g~~~~~i~~~E~G~IPm~~~~~~~~~~~~v~~iG~agG~v~PsTGYs~~~~~~~a~~ia~~l~~ 290 (374)
T PF05834_consen 212 EEELKARLRRYLERLGIDDYEILEEERGVIPMTTGGFPPRFGQRVIRIGTAGGMVKPSTGYSFARIQRQADAIADALAK 290 (374)
T ss_pred HHHHHHHHHHHHHHcCCCceeEEEeecceeecccCCCccccCCCeeeEEccccCCCCcccHHHHHHHHHHHHHHHHHhh
Confidence 66777777777654 33446777777777777 455555677899999999999999998888888888877777765
No 58
>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]
Probab=99.94 E-value=1.2e-24 Score=199.94 Aligned_cols=330 Identities=18% Similarity=0.180 Sum_probs=210.4
Q ss_pred CCCCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC-CCCCCcccccCcc---ccccCCCCh---hhHhcccceEEEE
Q 012488 46 LTNRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL-DNCKPCGGAIPLC---MVGEFDLPL---DIIDRKVTKMKMI 118 (462)
Q Consensus 46 ~~~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~-~~~~~~g~~i~~~---~l~~~g~~~---~~~~~~~~~~~~~ 118 (462)
+.....||+|||||.+|+++|+.|+|.|.+|+|+||+- ++++..|+.+++. .|.++|+.+ .+..+...++.++
T Consensus 41 ~~~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~if 120 (509)
T KOG1298|consen 41 RNDGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAIF 120 (509)
T ss_pred ccCCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEEE
Confidence 44556899999999999999999999999999999997 6778889888754 678888754 3445567777776
Q ss_pred cCCCceEeccCcccC--C-CeEEeeehHHHHHHHHHHHHHC-CCEEEcceeEEEEecCCCCCCEEEEEeccCCccCCCCc
Q 012488 119 SPSNVAVDIGQTLKP--H-EYIGMVRREVLDAYLRERAEKN-GASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVGE 194 (462)
Q Consensus 119 ~~~~~~~~~~~~~~~--~-~~~~~v~r~~l~~~L~~~~~~~-gv~i~~~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 194 (462)
. +|+..+.+-+.+. . ......+..+|.+-|++.+... +|++..|+|.++. ++++....|++++. .++
T Consensus 121 k-~gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeGtV~sLl--ee~gvvkGV~yk~k------~ge 191 (509)
T KOG1298|consen 121 K-DGKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEGTVKSLL--EEEGVVKGVTYKNK------EGE 191 (509)
T ss_pred e-CCceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeeeeHHHHH--hccCeEEeEEEecC------CCc
Confidence 5 5555544322211 1 1111334456888888877654 6999999988876 23332233566553 466
Q ss_pred eeEEEecEEEecCCCChHhhhhhcCCCCc-eEEEEEEEEecCCcccccccCeeEEEecCCCCCCeEEEEEeCCC-ceEEE
Q 012488 195 KRTLEVDAVIGADGANSRVAKSINAGDYD-YAIAFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCD-HVAVG 272 (462)
Q Consensus 195 ~~~~~adlvI~AdG~~S~vr~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p~~~-~~~v~ 272 (462)
+.+..|.+.|.|||..|.+|+.+-.+... ....|.+.+.. +...+.|+..++.++.. + ...++|... .+.+.
T Consensus 192 e~~~~ApLTvVCDGcfSnlRrsL~~~~v~~V~S~fVG~vl~--N~~l~~p~hghvIL~~p-s---pil~Y~ISStEvRcl 265 (509)
T KOG1298|consen 192 EVEAFAPLTVVCDGCFSNLRRSLCDPKVEEVPSYFVGLVLK--NCRLPAPNHGHVILSKP-S---PILVYQISSTEVRCL 265 (509)
T ss_pred eEEEecceEEEecchhHHHHHHhcCCcccccchheeeeeec--CCCCCCCCcceEEecCC-C---cEEEEEecchheEEE
Confidence 78999999999999999999999654322 11122111111 11123455566666643 2 233344322 22222
Q ss_pred EEeccCC-CcHH--HHHHHHHHh------------hhcccCCCeEEeEEeeecCCCCCCcccCCCEEEEccCCcCcccCC
Q 012488 273 TGTVTHK-GDIK--KFQLATRNR------------AKDKILGGKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCS 337 (462)
Q Consensus 273 ~~~~~~~-~~~~--~~~~~~~~~------------~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~v~liGDAAh~~~P~~ 337 (462)
.....++ +.+. ++...+.+. +.+.+.++. ++..|....+.......+++++|||..+-+|++
T Consensus 266 ~~v~g~~~Psi~~gem~~~mk~~v~PqiP~~lR~~F~~av~~g~---irsmpn~~mpa~~~~~~G~illGDAfNMRHPlt 342 (509)
T KOG1298|consen 266 VDVPGQKLPSIANGEMATYMKESVAPQIPEKLRESFLEAVDEGN---IRSMPNSSMPATLNDKKGVILLGDAFNMRHPLT 342 (509)
T ss_pred EecCcccCCcccchhHHHHHHHhhCcCCCHHHHHHHHHHhhccc---hhcCccccCCCCcCCCCceEEEcccccccCCcc
Confidence 2211111 1111 122222222 222222222 344444444444555678999999999999999
Q ss_pred cccHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhhhhHHHHHHHhHhhhc
Q 012488 338 GEGIYFAAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFY 397 (462)
Q Consensus 338 G~G~~~a~~da~~la~~l~~a~~~~~~~~~~~~L~~y~~~~~~~~~~~~~~~~~~~~~~~ 397 (462)
|.||..|+.|..+|-+.|.... +..+.+.+.+|.+.|...+++....++.+...+|
T Consensus 343 ggGMtV~l~Di~lLr~ll~pl~----dL~d~ekv~~~i~sFy~~RKp~s~tINtLa~Aly 398 (509)
T KOG1298|consen 343 GGGMTVALSDIVLLRRLLKPLP----DLSDAEKVSDYIKSFYWIRKPYSATINTLANALY 398 (509)
T ss_pred CCceEeehhHHHHHHHHhcccc----ccccHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Confidence 9999999999999988885532 2246788889999999999998777776554444
No 59
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=99.94 E-value=3.3e-25 Score=235.58 Aligned_cols=302 Identities=17% Similarity=0.129 Sum_probs=168.5
Q ss_pred ccEEEECCchHHHHHHHHHHHC--CCcEEEEcCCCCCCCCcccc--cCccccccCCCChhhHhc-------ccceEEEEc
Q 012488 51 LRVAVIGGGPAGGAAAETLAKN--GVETFLIERKLDNCKPCGGA--IPLCMVGEFDLPLDIIDR-------KVTKMKMIS 119 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~--g~~v~v~E~~~~~~~~~g~~--i~~~~l~~~g~~~~~~~~-------~~~~~~~~~ 119 (462)
++|+|||||||||++|+.|+++ |++|+|+||++.. ...|.+ ++...++.|...+..... .+....+..
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~-~~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPY-DTFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHF 79 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCC-cccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEE
Confidence 4799999999999999999998 8999999998743 234443 455555555433321111 122233332
Q ss_pred CCCceEeccCcccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEE
Q 012488 120 PSNVAVDIGQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTL 198 (462)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 198 (462)
.+..... ....+ ..+.|..|.+.|.+++.+.|+++++++ ++++. + ...
T Consensus 80 -~g~~~~~----~g~~~-~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~--------------~-----------~~~ 128 (765)
T PRK08255 80 -KGRRIRS----GGHGF-AGIGRKRLLNILQARCEELGVKLVFETEVPDDQ--------------A-----------LAA 128 (765)
T ss_pred -CCEEEEE----CCeeE-ecCCHHHHHHHHHHHHHHcCCEEEeCCccCchh--------------h-----------hhc
Confidence 2221111 11222 358899999999999999999999876 54332 0 235
Q ss_pred EecEEEecCCCChHhhhhhcCC-CCc---eEEEEEEEEecCCcccccccCeeEEEecCCCCCCeEEE--EEeCCCc--eE
Q 012488 199 EVDAVIGADGANSRVAKSINAG-DYD---YAIAFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGW--VFPKCDH--VA 270 (462)
Q Consensus 199 ~adlvI~AdG~~S~vr~~l~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w--~~p~~~~--~~ 270 (462)
++|+||+|||.+|.+|+++... ... ....+. +....... ......+.. .+.++.| .+|..+. .+
T Consensus 129 ~~D~VVgADG~~S~vR~~~~~~~~~~~~~~~~~~~--w~g~~~~~---~~~~~~~~~---~~~g~~~~~~y~~~~~~~~~ 200 (765)
T PRK08255 129 DADLVIASDGLNSRIRTRYADTFQPDIDTRRCRFV--WLGTHKVF---DAFTFAFEE---TEHGWFQAHAYRFDDDTSTF 200 (765)
T ss_pred CCCEEEEcCCCCHHHHHHHHhhcCCceecCCCceE--EecCCCcc---cceeEEEEe---cCCceEEEEEeeeCCCCcEE
Confidence 7899999999999999986421 010 000011 11111000 000000000 0111211 2332222 11
Q ss_pred EEEEec-------cCCCcHHHHHHHHHHhhhcccCCCeEEeE-------EeeecCCCCCCcccCCC----EEEEccCCcC
Q 012488 271 VGTGTV-------THKGDIKKFQLATRNRAKDKILGGKIIRV-------EAHPIPEHPRPRRLSGR----VALVGDAAGY 332 (462)
Q Consensus 271 v~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~i~~~~~~~~~~~~----v~liGDAAh~ 332 (462)
+..... .+....++..+.+.+.+....+...++.. ..........++|+.+| ++|+|||||.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~~li~~~~~~~~~~w~~~~~~~~~~w~~gr~~~~v~liGDAAH~ 280 (765)
T PRK08255 201 IVETPEEVWRAAGLDEMSQEESIAFCEKLFADYLDGHPLMSNASHLRGSAWINFPRVVCERWVHWNRRVPVVLMGDAAHT 280 (765)
T ss_pred EEEcCHHHHHhcCCccCCHHHHHHHHHHHhHHhcCCCcccccccccccceeeecceeccCCCccCCCcccEEEEEcCccc
Confidence 111110 01112223333333333333221111110 11222323456888888 9999999999
Q ss_pred cccCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhhhhHHHHHHHhHhhhc
Q 012488 333 VTKCSGEGIYFAAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVLQKVFY 397 (462)
Q Consensus 333 ~~P~~G~G~~~a~~da~~la~~l~~a~~~~~~~~~~~~L~~y~~~~~~~~~~~~~~~~~~~~~~~ 397 (462)
++|+.|||+|+||+||..|++.|.... . ..+..|..|++.++.+........+...+++.
T Consensus 281 ~~P~~GqG~~~aieDa~~La~~L~~~~---~--~~~~al~~ye~~R~~r~~~~~~~s~~~~~~~~ 340 (765)
T PRK08255 281 AHFSIGSGTKLALEDAIELARCLHEHP---G--DLPAALAAYEEERRVEVLRIQNAARNSTEWFE 340 (765)
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHcc---c--cHHHHHHHHHHHHHHHHHHHHHHHHHhCceee
Confidence 999999999999999999999997631 1 23566777777766666666655554444443
No 60
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=99.92 E-value=3.1e-23 Score=192.29 Aligned_cols=405 Identities=20% Similarity=0.235 Sum_probs=262.3
Q ss_pred CCCccEEEECCchHHHHHHHHHHHC------CCcEEEEcCCC--CCCCCcccccCccccccCCCChhh----H--hcccc
Q 012488 48 NRNLRVAVIGGGPAGGAAAETLAKN------GVETFLIERKL--DNCKPCGGAIPLCMVGEFDLPLDI----I--DRKVT 113 (462)
Q Consensus 48 ~~~~dVvIVGgG~aGl~~A~~L~~~------g~~v~v~E~~~--~~~~~~g~~i~~~~l~~~g~~~~~----~--~~~~~ 113 (462)
...+||+|||||||||++|+.|++. .++|+|+||.. .....+|+.+.+..|++|-....- + ...-+
T Consensus 74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGaviep~aldEL~P~wke~~apl~t~vT~d 153 (621)
T KOG2415|consen 74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNTPVTSD 153 (621)
T ss_pred hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecceeeccchhhhhCcchhhcCCccccccccc
Confidence 3468999999999999999999764 57999999998 344557777777777776321111 0 11223
Q ss_pred eEEEEcCCCceEeccC--cccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCE-EEEEeccCCcc
Q 012488 114 KMKMISPSNVAVDIGQ--TLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPY-VLYYTEYDGTK 189 (462)
Q Consensus 114 ~~~~~~~~~~~~~~~~--~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~-~v~~~~~~~~~ 189 (462)
.+.+...++. +..+. +..... .++++-..+..+|-+.|++.|++|+.+. +..+.. ++++.| .|.+.|-+ .
T Consensus 154 ~~~fLt~~~~-i~vPv~~pm~NhG-NYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly--~edgsVkGiaT~D~G--I 227 (621)
T KOG2415|consen 154 KFKFLTGKGR-ISVPVPSPMDNHG-NYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLY--DEDGSVKGIATNDVG--I 227 (621)
T ss_pred ceeeeccCce-eecCCCcccccCC-cEEEEHHHHHHHHHHHHHhhCceeccccchhheeE--cCCCcEeeEeecccc--c
Confidence 4556655543 33322 222222 5589999999999999999999999998 776764 333333 34444321 1
Q ss_pred CCCC-------ceeEEEecEEEecCCCChHhhhhhcC--------CCCceEEEEEEEEecCCcccccccCeeEEEecCCC
Q 012488 190 GGVG-------EKRTLEVDAVIGADGANSRVAKSINA--------GDYDYAIAFQERVKIPDEKMVYYENLAEMYVGDDV 254 (462)
Q Consensus 190 ~~~~-------~~~~~~adlvI~AdG~~S~vr~~l~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (462)
...| .+.++.|+..|-|.|.+..+.+++-. +...|.+...+.|.++++. +.++...+.+|.+.
T Consensus 228 ~k~G~pKd~FerGme~hak~TifAEGc~G~Lskqi~kkf~Lr~n~e~qtYglGlKEvWei~~~~--~~pG~v~HT~GwPl 305 (621)
T KOG2415|consen 228 SKDGAPKDTFERGMEFHAKVTIFAEGCHGSLSKQIIKKFDLRENCEPQTYGLGLKEVWEIDPEN--HNPGEVAHTLGWPL 305 (621)
T ss_pred cCCCCccccccccceecceeEEEeccccchhHHHHHHHhCcccCCCcceeccccceeEecChhh--cCCcceeeeccCcc
Confidence 1122 24689999999999999999887632 1355778888888888765 34667777777665
Q ss_pred CCCeEE--EEEeCCCc-eEEEE--EeccCCC---cHHHHHHHHHH-hhhcccCCCeEEeEEeeecCCC---CCCcccCCC
Q 012488 255 SPDFYG--WVFPKCDH-VAVGT--GTVTHKG---DIKKFQLATRN-RAKDKILGGKIIRVEAHPIPEH---PRPRRLSGR 322 (462)
Q Consensus 255 ~~~~~~--w~~p~~~~-~~v~~--~~~~~~~---~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~i~~~---~~~~~~~~~ 322 (462)
.+.-|+ +.+..++. +.+|+ +.....+ +.++|++.-.. .+.+.+++++.+...+..+... ..+....++
T Consensus 306 ~~~tYGGsFlYh~~d~~VavGlVVgLdY~NP~lsP~~EFQk~K~hP~i~~vleGgk~i~YgARaLNEGGfQsiPkl~FPG 385 (621)
T KOG2415|consen 306 DNDTYGGSFLYHFNDPLVAVGLVVGLDYKNPYLSPYKEFQKMKHHPSISKVLEGGKRIAYGARALNEGGFQSIPKLVFPG 385 (621)
T ss_pred cCCccCceeEEEcCCCeEEEEEEEEecCCCCCCCHHHHHHHhhcCcchhhhhcCcceeeehhhhhccCCcccCcccccCC
Confidence 544332 23333443 44543 2233333 34555554332 3677888899988888877763 455677788
Q ss_pred EEEEccCCcCcccCCcccHHHHHHHHHHHHHHHHHHhhcCCCC-CChhHHHHHHHHHHH-hhhhHHHHHHHhHhhhccCc
Q 012488 323 VALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIIEGSENGTRM-IDEGDLRKYLEKWDK-TYWPTYKVLDVLQKVFYRSN 400 (462)
Q Consensus 323 v~liGDAAh~~~P~~G~G~~~a~~da~~la~~l~~a~~~~~~~-~~~~~L~~y~~~~~~-~~~~~~~~~~~~~~~~~~~~ 400 (462)
-+|||=+|++++----.|..+||+++..+|+.+-+++...... .....+..|++..+. ..++.+...++++..|....
T Consensus 386 G~liGcSaGFlNVpKIKGTHtAMKSGmlAAesif~ai~~~~~~k~~~~~~~~Ye~nlkds~V~KeLysvRNirPsf~~~l 465 (621)
T KOG2415|consen 386 GALIGCSAGFLNVPKIKGTHTAMKSGMLAAESIFEAIKGLPQSKMAGLDPTTYEENLKDSYVWKELYSVRNIRPSFHGKL 465 (621)
T ss_pred ceEeecccccccccccccchhhhhcchhHHHHHHHHHhcCccccccccChhhHHHhhhhhHHHHHHHHhhccCccccccc
Confidence 9999999999999999999999999999999999998765310 111234577766554 35566777777666565432
Q ss_pred h-----hHHHHHHHhcc---ccccccC-hhhHhhhhhc----CCCChhHHHHHHHHhhhhhcccccCccccCC
Q 012488 401 P-----AREAFVEMCAD---EYVQKMT-FDSYLYKRVV----PGNPLEDLKLAVNTIGSLVRANALRREMDKL 460 (462)
Q Consensus 401 ~-----~~~~~~~~~~~---~~~~~~~-~~~~l~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 460 (462)
. ....++.++.. +|.-... .+....+-.- -.-|+-+-++-|++++|+.++++.|.+|||-
T Consensus 466 G~ygGmiySgi~~~~lkG~~PwTLkh~~~D~e~l~pa~k~~pI~YPKPDg~lSFDlltSvs~sgTnH~~dqP~ 538 (621)
T KOG2415|consen 466 GLYGGMIYSGIFSYVLKGKVPWTLKHGKNDHEALKPASKYKPIVYPKPDGVLSFDLLTSVSRSGTNHDEDQPA 538 (621)
T ss_pred ccccchhhhhhHHHhhcCccceeeccCCCchhhccchhhCCCcccCCCCceEEEeecchhhccCCCCCCCCCc
Confidence 2 22333333322 2221111 1111111111 1234556678999999999999999999984
No 61
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=99.91 E-value=1.4e-21 Score=191.04 Aligned_cols=269 Identities=16% Similarity=0.126 Sum_probs=161.3
Q ss_pred cEEEECCchHHHHHHHHHHHC--CCcEEEEcCCCCCCCCcccccCccccccCC--CChhhHhcccceEEEEcCCCceEec
Q 012488 52 RVAVIGGGPAGGAAAETLAKN--GVETFLIERKLDNCKPCGGAIPLCMVGEFD--LPLDIIDRKVTKMKMISPSNVAVDI 127 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~--g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (462)
||+|||||+||+++|+.|++. |++|+|+|+.+.......+++...-+.... ..++++...+....+..+.... .+
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~-~l 79 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRR-KL 79 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhh-hc
Confidence 899999999999999999987 999999999863222222223221111111 1234445555555555432211 11
Q ss_pred cCcccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEec
Q 012488 128 GQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGA 206 (462)
Q Consensus 128 ~~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~A 206 (462)
. ..| ..+++..|.+.|.+.+.. + ++.+. |..+. . +.++ +.+| .+++|++||+|
T Consensus 80 ----~-~~Y-~~I~r~~f~~~l~~~l~~-~--i~~~~~V~~v~----~-~~v~--l~dg----------~~~~A~~VI~A 133 (370)
T TIGR01789 80 ----K-TAY-RSMTSTRFHEGLLQAFPE-G--VILGRKAVGLD----A-DGVD--LAPG----------TRINARSVIDC 133 (370)
T ss_pred ----C-CCc-eEEEHHHHHHHHHHhhcc-c--EEecCEEEEEe----C-CEEE--ECCC----------CEEEeeEEEEC
Confidence 1 233 378899999999876644 3 55454 77764 2 2243 4666 79999999999
Q ss_pred CCCChHhhhhhcCCCCceEEEEEEEEecCCcccccccCeeEE---EecCCCCCCeEEEEEeCCCceE-EEEEeccC--CC
Q 012488 207 DGANSRVAKSINAGDYDYAIAFQERVKIPDEKMVYYENLAEM---YVGDDVSPDFYGWVFPKCDHVA-VGTGTVTH--KG 280 (462)
Q Consensus 207 dG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~w~~p~~~~~~-v~~~~~~~--~~ 280 (462)
+|.+|.-.... .++...++..+...+ +.++...+ .+.. .....|+|++|..+... +......+ ..
T Consensus 134 ~G~~s~~~~~~---~~Q~f~G~~~r~~~p-----~~~~~~~lMD~~~~q-~~g~~F~Y~lP~~~~~~lvE~T~~s~~~~l 204 (370)
T TIGR01789 134 RGFKPSAHLKG---GFQVFLGREMRLQEP-----HGLENPIIMDATVDQ-LAGYRFVYVLPLGSHDLLIEDTYYADDPLL 204 (370)
T ss_pred CCCCCCccccc---eeeEEEEEEEEEcCC-----CCCCccEEEeeeccC-CCCceEEEECcCCCCeEEEEEEeccCCCCC
Confidence 99997522221 233333443333322 22222211 1211 11224788889887654 43333322 23
Q ss_pred cHHHHHHHHHHhhhc-ccCCCeEEeEEeeecCCCC---CC-c-ccCCCEEEEccCCcCcccCCcccHHHHHHHHHHHHHH
Q 012488 281 DIKKFQLATRNRAKD-KILGGKIIRVEAHPIPEHP---RP-R-RLSGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEA 354 (462)
Q Consensus 281 ~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~i~~~~---~~-~-~~~~~v~liGDAAh~~~P~~G~G~~~a~~da~~la~~ 354 (462)
+.+.+.+.+.+++.. .+...+++......+|... .. . ...++++++|||||.++|.+|+|++.+++++..|++.
T Consensus 205 ~~~~l~~~l~~~~~~~g~~~~~i~~~e~g~iPm~~~~~~~~~~~~~~~v~~iG~AAg~~~P~tGyg~~~a~~~a~~la~~ 284 (370)
T TIGR01789 205 DRNALSQRIDQYARANGWQNGTPVRHEQGVLPVLLGGDFSAYQDEVRIVAIAGLRAGLTHPTTGYSLPVAVENADALAAQ 284 (370)
T ss_pred CHHHHHHHHHHHHHHhCCCceEEEEeeeeEEeeecCCCcccccccCCceeeeecccccccccccccHHHHHHHHHHHHhc
Confidence 456666667666543 2333556555555555411 11 1 2256699999999999999999999999999999887
Q ss_pred HH
Q 012488 355 II 356 (462)
Q Consensus 355 l~ 356 (462)
+.
T Consensus 285 ~~ 286 (370)
T TIGR01789 285 PD 286 (370)
T ss_pred cC
Confidence 73
No 62
>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]
Probab=99.90 E-value=1.6e-22 Score=188.09 Aligned_cols=343 Identities=19% Similarity=0.261 Sum_probs=202.2
Q ss_pred CCCCccEEEECCchHHHHHHHHHHHC----CCcEEEEcCCCC--C-CCCcccc-------cC---ccccccCCCChhhHh
Q 012488 47 TNRNLRVAVIGGGPAGGAAAETLAKN----GVETFLIERKLD--N-CKPCGGA-------IP---LCMVGEFDLPLDIID 109 (462)
Q Consensus 47 ~~~~~dVvIVGgG~aGl~~A~~L~~~----g~~v~v~E~~~~--~-~~~~g~~-------i~---~~~l~~~g~~~~~~~ 109 (462)
.+..+||+||||||+|+++|..|... .++|.++|-... . ....++. ++ ...++.+|.++.+..
T Consensus 33 ~~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~~~~~f~Nrvss~s~~s~~~fk~~~awd~i~~ 112 (481)
T KOG3855|consen 33 DTAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFKPSETFSNRVSSISPASISLFKSIGAWDHIFH 112 (481)
T ss_pred CcccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccccCccccceeecCCcchHHHHHhcCHHHHhhh
Confidence 34479999999999999999999854 579999998841 1 0011111 11 234667788776655
Q ss_pred cccc---eEEEEcCCC-ceEeccCcccCCCeEEeeehHHHHHHHHH--HHHH-CCCEEEcce-eEEEEec----CCCC-C
Q 012488 110 RKVT---KMKMISPSN-VAVDIGQTLKPHEYIGMVRREVLDAYLRE--RAEK-NGASVINGL-FMKMDLP----RNFE-Q 176 (462)
Q Consensus 110 ~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~v~r~~l~~~L~~--~~~~-~gv~i~~~~-v~~~~~~----~~~~-~ 176 (462)
.++. ++.+++... ..+.+++.....+...++....+...|.. ...+ ..+++.+.. +.++..+ ..+. .
T Consensus 113 ~R~~~~~~~~v~Ds~s~a~I~~~~d~~~~d~a~iien~nIq~sL~~s~~~s~~~nv~vi~~~k~~~~~~~~~l~~~~n~~ 192 (481)
T KOG3855|consen 113 DRYQKFSRMLVWDSCSAALILFDHDNVGIDMAFIIENDNIQCSLYNSQLDSESDNVTVINMAKVIDCTIPEYLIKNDNGM 192 (481)
T ss_pred hccccccceeeecccchhhhhhccccccccceeeeehhHHHHHHHHHHHhhhcCceeeecccceeeeccccccCCCCCcc
Confidence 4433 344444322 23444433223334456666666665652 2223 358998877 7887753 2222 2
Q ss_pred CEEEEEeccCCccCCCCceeEEEecEEEecCCCChHhhhhhcCC--CCceEE-EEEEEEecCCc----cccc--ccC---
Q 012488 177 PYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSRVAKSINAG--DYDYAI-AFQERVKIPDE----KMVY--YEN--- 244 (462)
Q Consensus 177 ~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S~vr~~l~~~--~~~~~~-~~~~~~~~~~~----~~~~--~~~--- 244 (462)
...+++.|| ..+.+|++|+|||.||.+|+...++ .+.|.. +......+..+ ...+ +..
T Consensus 193 ~~~i~l~dg----------~~~~~~LLigAdg~Ns~vR~~snid~~~~ny~~havVAtl~l~~~~~~~~~AwQRFlP~Gp 262 (481)
T KOG3855|consen 193 WFHITLTDG----------INFATDLLIGADGFNSVVRKASNIDVASWNYDQHAVVATLKLEEEAILNGVAWQRFLPTGP 262 (481)
T ss_pred eEEEEeccC----------ceeeeceeeccccccchhhhhcCCCcccccccceeeeEEEEecccccccchhHHhcCCCCc
Confidence 455777777 7999999999999999999999876 333311 11111122211 1111 111
Q ss_pred eeEEEecCCCCCCeEEEEEeC-----------CCce---EEEEEeccCCC-----------cHHHHHHHHHHhhhcc---
Q 012488 245 LAEMYVGDDVSPDFYGWVFPK-----------CDHV---AVGTGTVTHKG-----------DIKKFQLATRNRAKDK--- 296 (462)
Q Consensus 245 ~~~~~~~~~~~~~~~~w~~p~-----------~~~~---~v~~~~~~~~~-----------~~~~~~~~~~~~~~~~--- 296 (462)
+....... ......|.... +.-+ +-.+....... ...+..+.+.....+.
T Consensus 263 iAllpl~d--~~s~LvWSts~~~a~~L~~lp~e~fv~~lNsaf~~q~~~~~~~~~~~~al~~~~~~~~sl~~~~k~~~~~ 340 (481)
T KOG3855|consen 263 IALLPLSD--TLSSLVWSTSPENASILKSLPEERFVDLLNSAFSSQNPRAAYSDDADFALNGRAQLSESLLNTSKRLANQ 340 (481)
T ss_pred eeeccccc--ccccceeecCHHHHHHHhcCCchhHHHHHHHHHhccCCCchhhhchhhhhcchhhccHHHHhccCccccc
Confidence 11111111 11235564321 1000 00000000000 0000011111111100
Q ss_pred cCCCeEEeE-----EeeecCCCCCCcccCCCEEEEccCCcCcccCCcccHHHHHHHHHHHHHHHHHHhhcCCCCCChhHH
Q 012488 297 ILGGKIIRV-----EAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIIEGSENGTRMIDEGDL 371 (462)
Q Consensus 297 l~~~~~~~~-----~~~~i~~~~~~~~~~~~v~liGDAAh~~~P~~G~G~~~a~~da~~la~~l~~a~~~~~~~~~~~~L 371 (462)
-....+.+. ..+|+-......+..+|+.++|||||.++|+.|||.|+++.|...|.+.|.++...+.+..+...|
T Consensus 341 q~pp~V~~v~dksRa~FPLgf~ha~~yV~~~~Al~GDAAHr~hPlAgqGvNlg~~dV~~L~~sL~~ai~~g~DlgS~~~L 420 (481)
T KOG3855|consen 341 QYPPSVFEVGDKSRAQFPLGFGHADEYVTDRVALIGDAAHRVHPLAGQGVNLGFSDVKILVDSLSEAIVSGLDLGSVEHL 420 (481)
T ss_pred ccCCeEEEecccceeecccccccHHHhcCCchhhhcchhhccccCcccccCCChhhHHHHHHHHHHHHHhcccccchhhh
Confidence 001112221 245666667778889999999999999999999999999999999999999999999888899999
Q ss_pred HHHHHHHHHhhhhHHHHHHHhHhhhccCch
Q 012488 372 RKYLEKWDKTYWPTYKVLDVLQKVFYRSNP 401 (462)
Q Consensus 372 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (462)
+.|+......-.+.+-..+++.+++....+
T Consensus 421 ~~y~~~~~~~N~~ll~~vdkl~klY~t~~p 450 (481)
T KOG3855|consen 421 EPYERERLQHNYVLLGAVDKLHKLYATSAP 450 (481)
T ss_pred hHHHHHHhhhcchHHHHHHHHHHHHhccCC
Confidence 999988877777777778888887776543
No 63
>PF08491 SE: Squalene epoxidase; InterPro: IPR013698 This domain is found in squalene epoxidase (SE) and related proteins which are found in taxonomically diverse groups of eukaryotes and also in bacteria. SE was first cloned from Saccharomyces cerevisiae (Baker's yeast) where it was named ERG1. It contains a putative FAD binding site and is a key enzyme in the sterol biosynthetic pathway []. Putative transmembrane regions are found to the protein's C terminus. ; GO: 0004506 squalene monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=99.69 E-value=1.1e-14 Score=132.26 Aligned_cols=243 Identities=17% Similarity=0.137 Sum_probs=149.0
Q ss_pred ecEEEecCCCChHhhhhhcCCCCceEEEEEEEEecCCcccccccCeeEEEecCCCCCCeEEEEEeCCCc-eEEEEEeccC
Q 012488 200 VDAVIGADGANSRVAKSINAGDYDYAIAFQERVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDH-VAVGTGTVTH 278 (462)
Q Consensus 200 adlvI~AdG~~S~vr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p~~~~-~~v~~~~~~~ 278 (462)
|+++|+|||..|++|+.+....+.....|.+- .+.+.. ...++..++++++. +.+++++.+.. +.+-+....+
T Consensus 2 A~LtivaDG~~S~fRk~l~~~~~~v~S~fvGl-~l~~~~-lp~~~~ghvil~~~----~pil~YqI~~~etR~Lvdvp~~ 75 (276)
T PF08491_consen 2 APLTIVADGCFSKFRKELSDNKPQVRSYFVGL-ILKDAP-LPKPNHGHVILGKP----GPILLYQISSNETRVLVDVPGP 75 (276)
T ss_pred CCEEEEecCCchHHHHhhcCCCCceeeeEEEE-EEcCCC-CCCCCceEEEEcCC----CcEEEEEcCCCceEEEEEeCCC
Confidence 68999999999999999986555554444332 333322 23467788887763 24666665443 3333322222
Q ss_pred C------CcHHHHHH-H--------HHHhhhcccCCCeEEeEEeeecCCCCCCcccCCCEEEEccCCcCcccCCcccHHH
Q 012488 279 K------GDIKKFQL-A--------TRNRAKDKILGGKIIRVEAHPIPEHPRPRRLSGRVALVGDAAGYVTKCSGEGIYF 343 (462)
Q Consensus 279 ~------~~~~~~~~-~--------~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~v~liGDAAh~~~P~~G~G~~~ 343 (462)
+ .+++++.. . +++.+.+.++++ +++..|....+......++++++|||+++.+|++|+||+.
T Consensus 76 k~P~~~~g~l~~yl~~~v~P~LP~~lr~~f~~al~~~---rirsMPn~~lp~~~~~~~G~vllGDA~nmrHPLTGgGMTV 152 (276)
T PF08491_consen 76 KLPSVSNGELKEYLREVVAPQLPEELRPSFEKALEDG---RIRSMPNSFLPASPNWKPGVVLLGDAANMRHPLTGGGMTV 152 (276)
T ss_pred ccCCccchHHHHHHHHHHHhhchHHHHHHHHHHhccC---CcceecccccCCCCCCCCCEEEEehhhcCcCCccccchhh
Confidence 1 12232222 1 222222223333 3455565555555556689999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCChhHHHHHHHHHHHhhhhHHHHHHHh----HhhhccCch----hHHHHHHHhccccc
Q 012488 344 AAKSGRMCAEAIIEGSENGTRMIDEGDLRKYLEKWDKTYWPTYKVLDVL----QKVFYRSNP----AREAFVEMCADEYV 415 (462)
Q Consensus 344 a~~da~~la~~l~~a~~~~~~~~~~~~L~~y~~~~~~~~~~~~~~~~~~----~~~~~~~~~----~~~~~~~~~~~~~~ 415 (462)
|+.|+..|++.|...- +..+...+.+..+.|...+++....++.+ +.+|..+++ +++..+++++....
T Consensus 153 Al~Dv~lL~~lL~~~~----dl~d~~~v~~~l~~f~~~Rk~~~s~iNiLA~aLY~lF~a~~~~l~~Lr~gcf~Yf~~GG~ 228 (276)
T PF08491_consen 153 ALNDVVLLRDLLSPIP----DLSDTKAVLEALKKFHWKRKPLSSVINILAQALYSLFAADDDYLKALRQGCFKYFQLGGE 228 (276)
T ss_pred HHHHHHHHHHHHhhhc----CcccHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCC
Confidence 9999999999998761 22345667777788888888776666654 455555543 56677776654321
Q ss_pred cccChhhHhhhhhcCCCChhHHHHHHHHhhhhhcccccCccc
Q 012488 416 QKMTFDSYLYKRVVPGNPLEDLKLAVNTIGSLVRANALRREM 457 (462)
Q Consensus 416 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 457 (462)
........+ . .+..+|......+|..+-+-+..+..+++-
T Consensus 229 ~~~gpv~LL-s-gl~p~P~~L~~Hff~Va~~~i~~~~~~~p~ 268 (276)
T PF08491_consen 229 CVSGPVALL-S-GLNPRPLVLFYHFFAVAFYAIYLNLKPRPW 268 (276)
T ss_pred CCcchHHHh-c-cCCCCcHHHHHHHHHHHHHHHHHHcccCCc
Confidence 111111222 2 335568777787777776666666665553
No 64
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.50 E-value=3.5e-13 Score=124.40 Aligned_cols=151 Identities=20% Similarity=0.210 Sum_probs=93.3
Q ss_pred CCCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCcc--ccccCCCC---hhhHhcccceEEEEcCC
Q 012488 47 TNRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLC--MVGEFDLP---LDIIDRKVTKMKMISPS 121 (462)
Q Consensus 47 ~~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~--~l~~~g~~---~~~~~~~~~~~~~~~~~ 121 (462)
...++||+||||||+||++|+.|+++|++|+|+||+... |++++.. .+..+.+. .++... -
T Consensus 18 ~~~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~----Ggg~~~gg~~~~~~~~~~~~~~~l~~----------~ 83 (254)
T TIGR00292 18 DYAESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAF----GGGSWGGGMLFSKIVVEKPAHEILDE----------F 83 (254)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC----CccccCCCcceecccccchHHHHHHH----------C
Confidence 345789999999999999999999999999999999732 2222110 01111111 111110 0
Q ss_pred CceEeccCcccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCC--CCEEEEEeccCCc-cCCCCceeE
Q 012488 122 NVAVDIGQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFE--QPYVLYYTEYDGT-KGGVGEKRT 197 (462)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~--~~~~v~~~~~~~~-~~~~~~~~~ 197 (462)
+..+.. .... ....++..+.+.|.+++.+.|+++++++ |.++.. .++ ....|.+...... .....+..+
T Consensus 84 gi~~~~----~~~g-~~~~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~--~~~~~~V~GVv~~~~~v~~~g~~~d~~~ 156 (254)
T TIGR00292 84 GIRYED----EGDG-YVVADSAEFISTLASKALQAGAKIFNGTSVEDLIT--RDDTVGVAGVVINWSAIELAGLHVDPLT 156 (254)
T ss_pred CCCeee----ccCc-eEEeeHHHHHHHHHHHHHHcCCEEECCcEEEEEEE--eCCCCceEEEEeCCccccccCCCCCCEE
Confidence 000000 1111 2246788999999999999999999988 888874 222 1122333221000 000113578
Q ss_pred EEecEEEecCCCChHhhhhhc
Q 012488 198 LEVDAVIGADGANSRVAKSIN 218 (462)
Q Consensus 198 ~~adlvI~AdG~~S~vr~~l~ 218 (462)
++|++||+|||..|.+.+.+.
T Consensus 157 i~Ak~VVdATG~~a~v~~~l~ 177 (254)
T TIGR00292 157 QRSRVVVDATGHDAEIVAVCA 177 (254)
T ss_pred EEcCEEEEeecCCchHHHHHH
Confidence 999999999999998887764
No 65
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.48 E-value=6e-13 Score=123.29 Aligned_cols=154 Identities=22% Similarity=0.255 Sum_probs=94.3
Q ss_pred CCCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCcc--ccccCCCChhhHhcccceEEEEcCCCce
Q 012488 47 TNRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLC--MVGEFDLPLDIIDRKVTKMKMISPSNVA 124 (462)
Q Consensus 47 ~~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~--~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 124 (462)
...++||+||||||||+++|+.|++.|++|+|+||.... |++++.. .+..+.+.+.... .+..+ +..
T Consensus 22 ~~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~----Ggg~~~gg~~~~~~~v~~~~~~-~l~~~------gv~ 90 (257)
T PRK04176 22 DYLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSF----GGGMWGGGMLFNKIVVQEEADE-ILDEF------GIR 90 (257)
T ss_pred HhccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCC----CCccccCccccccccchHHHHH-HHHHC------CCC
Confidence 456789999999999999999999999999999998732 2222110 1111111111100 00000 000
Q ss_pred EeccCcccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCE-EEEEeccCC-ccCCCCceeEEEec
Q 012488 125 VDIGQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPY-VLYYTEYDG-TKGGVGEKRTLEVD 201 (462)
Q Consensus 125 ~~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~-~v~~~~~~~-~~~~~~~~~~~~ad 201 (462)
+.. .... .+.+++..+...|.+.+.+.|+++++++ |.++.. ++++.+ .+.+.+... ......+..+++|+
T Consensus 91 ~~~---~~~g--~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~--~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak 163 (257)
T PRK04176 91 YKE---VEDG--LYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVIL--REDPRVAGVVINWTPVEMAGLHVDPLTIEAK 163 (257)
T ss_pred cee---ecCc--ceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeE--eCCCcEEEEEEccccccccCCCCCcEEEEcC
Confidence 000 0011 2357888999999999999999999987 888863 223222 222221100 00011244789999
Q ss_pred EEEecCCCChHhhhhhc
Q 012488 202 AVIGADGANSRVAKSIN 218 (462)
Q Consensus 202 lvI~AdG~~S~vr~~l~ 218 (462)
+||+|+|.+|.+.+.+.
T Consensus 164 ~VI~ATG~~a~v~~~l~ 180 (257)
T PRK04176 164 AVVDATGHDAEVVSVLA 180 (257)
T ss_pred EEEEEeCCCcHHHHHHH
Confidence 99999999999988875
No 66
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.48 E-value=2.3e-13 Score=128.20 Aligned_cols=147 Identities=21% Similarity=0.294 Sum_probs=91.4
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCC---CcccccCccccccCCCChhhHhccc----------ceE
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCK---PCGGAIPLCMVGEFDLPLDIIDRKV----------TKM 115 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~---~~g~~i~~~~l~~~g~~~~~~~~~~----------~~~ 115 (462)
+.+||+||||||||+++|+.++++|.+|+|||+.+...+ ..|++- +.+.....+++++.+.- ..+
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGr--CN~Tn~~~~~~~ls~~p~~~~fl~sal~~f 79 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGR--CNFTNSEAPDEFLSRNPGNGHFLKSALARF 79 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCC--ccccccccHHHHHHhCCCcchHHHHHHHhC
Confidence 468999999999999999999999999999999984322 122211 11111111222222111 000
Q ss_pred ------EEEcCCCceEeccCcccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCc
Q 012488 116 ------KMISPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGT 188 (462)
Q Consensus 116 ------~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~ 188 (462)
.+....|.....+. ...-|-..-....+.+.|..++++.||+++.++ |.+++. ++....+.+.+|
T Consensus 80 t~~d~i~~~e~~Gi~~~e~~--~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~---~~~~f~l~t~~g--- 151 (408)
T COG2081 80 TPEDFIDWVEGLGIALKEED--LGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEK---DDSGFRLDTSSG--- 151 (408)
T ss_pred CHHHHHHHHHhcCCeeEEcc--CceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEe---cCceEEEEcCCC---
Confidence 01111111111100 000000013456788899999999999999988 999983 335688888776
Q ss_pred cCCCCceeEEEecEEEecCCCChH
Q 012488 189 KGGVGEKRTLEVDAVIGADGANSR 212 (462)
Q Consensus 189 ~~~~~~~~~~~adlvI~AdG~~S~ 212 (462)
.+++||-+|.|+|..|.
T Consensus 152 -------~~i~~d~lilAtGG~S~ 168 (408)
T COG2081 152 -------ETVKCDSLILATGGKSW 168 (408)
T ss_pred -------CEEEccEEEEecCCcCC
Confidence 69999999999998775
No 67
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=99.46 E-value=1.3e-12 Score=112.56 Aligned_cols=154 Identities=21% Similarity=0.223 Sum_probs=94.9
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceE-e
Q 012488 48 NRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAV-D 126 (462)
Q Consensus 48 ~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~-~ 126 (462)
..+.||+||||||+||++|+.|+++|.+|+||||+-. .|++++..-+ . ++.+.+..+....+ +
T Consensus 28 ~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls----~GGG~w~GGm---l---------f~~iVv~~~a~~iL~e 91 (262)
T COG1635 28 YLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLS----FGGGIWGGGM---L---------FNKIVVREEADEILDE 91 (262)
T ss_pred hhhccEEEECcCcchHHHHHHHHhCCceEEEEEeecc----cCCccccccc---c---------cceeeecchHHHHHHH
Confidence 3467999999999999999999999999999999862 3555542100 0 00111111110000 0
Q ss_pred ccC-cccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccC-CCCceeEEEecEE
Q 012488 127 IGQ-TLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKG-GVGEKRTLEVDAV 203 (462)
Q Consensus 127 ~~~-~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~adlv 203 (462)
++- ......+.+..+...+..-|..++-+.|++|+++. |.++....+. ....|.+.-.-++.. ..=++..+++++|
T Consensus 92 ~gI~ye~~e~g~~v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~-rVaGvVvNWt~V~~~~lhvDPl~i~a~~V 170 (262)
T COG1635 92 FGIRYEEEEDGYYVADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDDP-RVAGVVVNWTPVQMAGLHVDPLTIRAKAV 170 (262)
T ss_pred hCCcceecCCceEEecHHHHHHHHHHHHHhcCceeeecceEEEEEEecCC-ceEEEEEecchhhhcccccCcceeeEEEE
Confidence 000 00122234567888888999999999999999998 9998753221 211122221100000 1113578999999
Q ss_pred EecCCCChHhhhhhc
Q 012488 204 IGADGANSRVAKSIN 218 (462)
Q Consensus 204 I~AdG~~S~vr~~l~ 218 (462)
|+|+|--..+-+.+.
T Consensus 171 vDaTGHda~v~~~~~ 185 (262)
T COG1635 171 VDATGHDAEVVSFLA 185 (262)
T ss_pred EeCCCCchHHHHHHH
Confidence 999998887776664
No 68
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=99.39 E-value=2.7e-12 Score=111.45 Aligned_cols=149 Identities=26% Similarity=0.314 Sum_probs=82.3
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCC-CCCccccc-Ccc-ccccCCCChhhHhcccceEEEEcCCCce
Q 012488 48 NRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDN-CKPCGGAI-PLC-MVGEFDLPLDIIDRKVTKMKMISPSNVA 124 (462)
Q Consensus 48 ~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~-~~~~g~~i-~~~-~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 124 (462)
..++||+||||||+||++|+.|++.|++|+|+|++... ...++++. -.+ .+++- ...++.. + +
T Consensus 15 ~~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~--a~~iL~e-l---------g-- 80 (230)
T PF01946_consen 15 YLEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEE--ADEILDE-L---------G-- 80 (230)
T ss_dssp HTEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETT--THHHHHH-H---------T--
T ss_pred hccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhh--HHHHHHh-C---------C--
Confidence 45789999999999999999999999999999998732 12222221 111 11110 0111111 0 0
Q ss_pred EeccCcccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCC--CEEEEEeccCCccCCCCceeEEEec
Q 012488 125 VDIGQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQ--PYVLYYTEYDGTKGGVGEKRTLEVD 201 (462)
Q Consensus 125 ~~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~ad 201 (462)
+.+. ....+.+..+...+...|...+-+.|++|++.. |.++....+ .. ++++....-. .....=++.+++|+
T Consensus 81 i~y~---~~~~g~~v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~-~rV~GvViNWt~V~-~~glHvDPl~i~ak 155 (230)
T PF01946_consen 81 IPYE---EYGDGYYVADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVRED-DRVAGVVINWTPVE-MAGLHVDPLTIRAK 155 (230)
T ss_dssp ---E---E-SSEEEES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECS-CEEEEEEEEEHHHH-TT--T-B-EEEEES
T ss_pred ceeE---EeCCeEEEEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcC-CeEEEEEEEehHHh-HhhcCCCcceEEEe
Confidence 0110 112345567888899999999888999999998 998875321 11 1222221110 00001245799999
Q ss_pred EEEecCCCChHhhh
Q 012488 202 AVIGADGANSRVAK 215 (462)
Q Consensus 202 lvI~AdG~~S~vr~ 215 (462)
+||+|+|--+.+.+
T Consensus 156 ~ViDaTGHda~v~~ 169 (230)
T PF01946_consen 156 VVIDATGHDAEVVR 169 (230)
T ss_dssp EEEE---SSSSSTS
T ss_pred EEEeCCCCchHHHH
Confidence 99999998775543
No 69
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.36 E-value=4.8e-11 Score=116.89 Aligned_cols=67 Identities=18% Similarity=0.188 Sum_probs=51.4
Q ss_pred eeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEE-EEEeccCCccCCCCceeEEEecEEEecCCCChHh-hh
Q 012488 139 MVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYV-LYYTEYDGTKGGVGEKRTLEVDAVIGADGANSRV-AK 215 (462)
Q Consensus 139 ~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S~v-r~ 215 (462)
.++-..+.+.|.+.+++.|++++.++ |+++.. +++.++ |.+.+| . +++|.||.|+|.++.. .+
T Consensus 143 ~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~---~~~~v~gv~~~~g----------~-i~ad~vV~a~G~~s~~l~~ 208 (358)
T PF01266_consen 143 VIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDV---DGGRVTGVRTSDG----------E-IRADRVVLAAGAWSPQLLP 208 (358)
T ss_dssp EEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEE---ETTEEEEEEETTE----------E-EEECEEEE--GGGHHHHHH
T ss_pred cccccchhhhhHHHHHHhhhhccccccccchhh---ccccccccccccc----------c-cccceeEecccccceeeee
Confidence 57888999999999999999999996 999983 344466 887776 5 9999999999998863 45
Q ss_pred hhcC
Q 012488 216 SINA 219 (462)
Q Consensus 216 ~l~~ 219 (462)
.++.
T Consensus 209 ~~~~ 212 (358)
T PF01266_consen 209 LLGL 212 (358)
T ss_dssp TTTT
T ss_pred cccc
Confidence 5544
No 70
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.32 E-value=2e-12 Score=127.13 Aligned_cols=148 Identities=20% Similarity=0.230 Sum_probs=75.6
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCC---Ccccc---cC------ccccccCCCChhhHhcccceE---
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCK---PCGGA---IP------LCMVGEFDLPLDIIDRKVTKM--- 115 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~---~~g~~---i~------~~~l~~~g~~~~~~~~~~~~~--- 115 (462)
|||+||||||||++||+.|++.|.+|+|+||++...+ ..|.+ ++ .+....++-...++...+..+
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~ 80 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPE 80 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HH
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHH
Confidence 7999999999999999999999999999999984321 11211 11 111222111111111111100
Q ss_pred ---EEEcCCCceEeccCcccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCC
Q 012488 116 ---KMISPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGG 191 (462)
Q Consensus 116 ---~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~ 191 (462)
.++...|...... .+...|...-+...+.+.|.+.+++.|+++++++ |.++.. .+++.+.|.+.++
T Consensus 81 d~~~ff~~~Gv~~~~~--~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~--~~~~~f~v~~~~~------ 150 (409)
T PF03486_consen 81 DLIAFFEELGVPTKIE--EDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEK--KEDGVFGVKTKNG------ 150 (409)
T ss_dssp HHHHHHHHTT--EEE---STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEE--ETTEEEEEEETTT------
T ss_pred HHHHHHHhcCCeEEEc--CCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeee--cCCceeEeeccCc------
Confidence 1111111111110 0011111112456788999999999999999998 999973 3344477777444
Q ss_pred CCceeEEEecEEEecCCCChH
Q 012488 192 VGEKRTLEVDAVIGADGANSR 212 (462)
Q Consensus 192 ~~~~~~~~adlvI~AdG~~S~ 212 (462)
.++.||.||.|+|..|.
T Consensus 151 ----~~~~a~~vILAtGG~S~ 167 (409)
T PF03486_consen 151 ----GEYEADAVILATGGKSY 167 (409)
T ss_dssp ----EEEEESEEEE----SSS
T ss_pred ----ccccCCEEEEecCCCCc
Confidence 79999999999998773
No 71
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.26 E-value=2.2e-09 Score=106.29 Aligned_cols=68 Identities=21% Similarity=0.248 Sum_probs=51.4
Q ss_pred eeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCCC-hHhhhh
Q 012488 139 MVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGAN-SRVAKS 216 (462)
Q Consensus 139 ~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~-S~vr~~ 216 (462)
.++...+.+.|.+.+++.|++++.++ |.++.. +++.+.|.+.+ .++.+|.||.|+|.+ +.+++.
T Consensus 141 ~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~---~~~~~~v~~~~-----------~~i~a~~vV~aaG~~~~~l~~~ 206 (380)
T TIGR01377 141 VLYAEKALRALQELAEAHGATVRDGTKVVEIEP---TELLVTVKTTK-----------GSYQANKLVVTAGAWTSKLLSP 206 (380)
T ss_pred EEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEe---cCCeEEEEeCC-----------CEEEeCEEEEecCcchHHHhhh
Confidence 56777888899999999999999887 988872 23446565433 368999999999986 567777
Q ss_pred hcCC
Q 012488 217 INAG 220 (462)
Q Consensus 217 l~~~ 220 (462)
++..
T Consensus 207 ~g~~ 210 (380)
T TIGR01377 207 LGIE 210 (380)
T ss_pred cccC
Confidence 7644
No 72
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.26 E-value=2.8e-09 Score=109.11 Aligned_cols=69 Identities=14% Similarity=0.191 Sum_probs=49.8
Q ss_pred eehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCCChH-hhhh
Q 012488 140 VRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSR-VAKS 216 (462)
Q Consensus 140 v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S~-vr~~ 216 (462)
++...|...+...+.+.|+++++.+ |+++.. +++.+.|++.+. .+++..+++|+.||.|+|.++. +.+.
T Consensus 152 vd~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~---~~~~~~v~~~~~-----~~g~~~~i~a~~VVnAaG~wa~~l~~~ 222 (508)
T PRK12266 152 VDDARLVVLNARDAAERGAEILTRTRVVSARR---ENGLWHVTLEDT-----ATGKRYTVRARALVNAAGPWVKQFLDD 222 (508)
T ss_pred cCHHHHHHHHHHHHHHcCCEEEcCcEEEEEEE---eCCEEEEEEEEc-----CCCCEEEEEcCEEEECCCccHHHHHhh
Confidence 4556676777888999999999887 988873 234466666552 1244468999999999999984 4443
No 73
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.26 E-value=3e-09 Score=108.93 Aligned_cols=206 Identities=14% Similarity=0.110 Sum_probs=107.9
Q ss_pred eeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCCChH-hhhh
Q 012488 139 MVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSR-VAKS 216 (462)
Q Consensus 139 ~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S~-vr~~ 216 (462)
.++...|...+...+++.|++++..+ |+++.. +++.+.|.+.++ .+++.+++|+.||.|+|.++. +.+.
T Consensus 151 ~vd~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~---~~~~~~v~~~~~------~g~~~~i~a~~VVnAaG~wa~~l~~~ 221 (502)
T PRK13369 151 WVDDARLVVLNALDAAERGATILTRTRCVSARR---EGGLWRVETRDA------DGETRTVRARALVNAAGPWVTDVIHR 221 (502)
T ss_pred eecHHHHHHHHHHHHHHCCCEEecCcEEEEEEE---cCCEEEEEEEeC------CCCEEEEEecEEEECCCccHHHHHhh
Confidence 35667788888899999999999887 888873 234466766664 155568999999999999985 5553
Q ss_pred h-cCCCCceEEEEEE-EEecCCcccccccCeeEEEecCCCCCCeEEEEEeCCCc-eEEEEEecc------C----CCcHH
Q 012488 217 I-NAGDYDYAIAFQE-RVKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDH-VAVGTGTVT------H----KGDIK 283 (462)
Q Consensus 217 l-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p~~~~-~~v~~~~~~------~----~~~~~ 283 (462)
+ +..........+. .+.++.. +.......+.. ..+.++|++|..+. .-+|..... + ...++
T Consensus 222 ~~g~~~~~~v~p~kG~~lv~~~~---~~~~~~~~~~~---~dgr~~~i~P~~~~~~liGtTd~~~~~~~~~~~~~~~~i~ 295 (502)
T PRK13369 222 VAGSNSSRNVRLVKGSHIVVPKF---WDGAQAYLFQN---PDKRVIFANPYEGDFTLIGTTDIAYEGDPEDVAADEEEID 295 (502)
T ss_pred ccCCCCCcceEEeeEEEEEeCCc---cCCCceEEEeC---CCCeEEEEEEecCCEEEEEecCccccCCCCCCCCCHHHHH
Confidence 3 4321111111111 1122211 11111112221 23456889998654 334543221 1 11233
Q ss_pred HHHHHHHHhhhcccCCCeEEeEEe--eecCCCCCC---cccCCCEEEEcc---CCcCcccCCcccHHHHHHHHHHHHHHH
Q 012488 284 KFQLATRNRAKDKILGGKIIRVEA--HPIPEHPRP---RRLSGRVALVGD---AAGYVTKCSGEGIYFAAKSGRMCAEAI 355 (462)
Q Consensus 284 ~~~~~~~~~~~~~l~~~~~~~~~~--~~i~~~~~~---~~~~~~v~liGD---AAh~~~P~~G~G~~~a~~da~~la~~l 355 (462)
.+.+.....+...+....+..... .|+...... ....+.++..-+ ..+.++ ..|.++++.-..|....+.+
T Consensus 296 ~ll~~~~~~~~~~l~~~~i~~~waGlRPl~~d~~~~~~~~sR~~~i~~~~~~g~~gli~-i~Ggk~Tt~r~~Ae~v~d~~ 374 (502)
T PRK13369 296 YLLDAANRYFKEKLRREDVVHSFSGVRPLFDDGAGNPSAVTRDYVFDLDAETGGAPLLS-VFGGKITTFRKLAEHALERL 374 (502)
T ss_pred HHHHHHHHhhCCCCCHhHEEEEeeceEEcCCCCCCCcccCCcceEEeeccccCCCCeEE-EeCChHhhHHHHHHHHHHHH
Confidence 444444444432444445443332 343321101 111222333221 123333 35668888888888888888
Q ss_pred HHHhh
Q 012488 356 IEGSE 360 (462)
Q Consensus 356 ~~a~~ 360 (462)
.+.+.
T Consensus 375 ~~~l~ 379 (502)
T PRK13369 375 KPFFP 379 (502)
T ss_pred HHhcC
Confidence 77643
No 74
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=99.23 E-value=5.4e-11 Score=120.74 Aligned_cols=144 Identities=22% Similarity=0.273 Sum_probs=87.4
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCC-C-CCCccc---ccCc-cccc---cCC-CChhhHhcccceEEEE
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLD-N-CKPCGG---AIPL-CMVG---EFD-LPLDIIDRKVTKMKMI 118 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~-~-~~~~g~---~i~~-~~l~---~~g-~~~~~~~~~~~~~~~~ 118 (462)
.+|||+|||||+||+.+|+.+++.|.+|+|+|++.. . ...|.. ++.. .+++ .+| +...+.......+.+.
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~l 82 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRML 82 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeec
Confidence 469999999999999999999999999999999841 1 112221 1111 1122 222 1112222111112222
Q ss_pred cCCCceEeccCcccCCCeEEeeehHHHHHHHHHHHHHC-CCEEEcceeEEEEecCCCCCCEEEEEeccCCccCCCCceeE
Q 012488 119 SPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRERAEKN-GASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRT 197 (462)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~-gv~i~~~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 197 (462)
+.... ... ......+++..+...|.+.+.+. |++++.+.|.++.. +++....|.+.+| ..
T Consensus 83 n~skG-----pAV--~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~~V~~Li~--e~grV~GV~t~dG----------~~ 143 (618)
T PRK05192 83 NTSKG-----PAV--RALRAQADRKLYRAAMREILENQPNLDLFQGEVEDLIV--ENGRVVGVVTQDG----------LE 143 (618)
T ss_pred ccCCC-----Cce--eCcHHhcCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEe--cCCEEEEEEECCC----------CE
Confidence 21100 000 00011478888999999888876 79998777887763 2232233666665 78
Q ss_pred EEecEEEecCCCCh
Q 012488 198 LEVDAVIGADGANS 211 (462)
Q Consensus 198 ~~adlvI~AdG~~S 211 (462)
+.|+.||+|+|.++
T Consensus 144 I~Ak~VIlATGTFL 157 (618)
T PRK05192 144 FRAKAVVLTTGTFL 157 (618)
T ss_pred EECCEEEEeeCcch
Confidence 99999999999765
No 75
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.22 E-value=7e-10 Score=112.45 Aligned_cols=59 Identities=22% Similarity=0.154 Sum_probs=46.4
Q ss_pred eeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCCChH
Q 012488 139 MVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSR 212 (462)
Q Consensus 139 ~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S~ 212 (462)
.++-..+...|.+.+++.|++|+.++ |.+++. ++.+.|.+.+| +++||.||.|+|.++.
T Consensus 179 ~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~----~~~~~v~t~~g-----------~v~A~~VV~Atga~s~ 238 (460)
T TIGR03329 179 SVQPGLLVRGLRRVALELGVEIHENTPMTGLEE----GQPAVVRTPDG-----------QVTADKVVLALNAWMA 238 (460)
T ss_pred EECHHHHHHHHHHHHHHcCCEEECCCeEEEEee----CCceEEEeCCc-----------EEECCEEEEccccccc
Confidence 56777888999999999999999987 888862 23455655443 6899999999998864
No 76
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.21 E-value=3e-09 Score=105.18 Aligned_cols=60 Identities=15% Similarity=0.131 Sum_probs=44.9
Q ss_pred eeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCCChH
Q 012488 139 MVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSR 212 (462)
Q Consensus 139 ~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S~ 212 (462)
.++...+...+.+.+.+.|++++.++ |+++.. +++.+.|.+.+ .++++|.||.|+|.++.
T Consensus 145 ~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~---~~~~~~v~~~~-----------g~~~a~~vV~A~G~~~~ 205 (376)
T PRK11259 145 FLRPELAIKAHLRLAREAGAELLFNEPVTAIEA---DGDGVTVTTAD-----------GTYEAKKLVVSAGAWVK 205 (376)
T ss_pred EEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEe---eCCeEEEEeCC-----------CEEEeeEEEEecCcchh
Confidence 45666677777788888999999876 988873 23346665543 26899999999999864
No 77
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.16 E-value=2.3e-09 Score=106.65 Aligned_cols=68 Identities=21% Similarity=0.241 Sum_probs=52.4
Q ss_pred eeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCCCh-Hhhhh
Q 012488 139 MVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANS-RVAKS 216 (462)
Q Consensus 139 ~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S-~vr~~ 216 (462)
.++...+.+.|.+.+++.|++++.++ |.++.. .++.+.|.+.+ .+++||.||.|+|.+| .+.+.
T Consensus 145 ~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~---~~~~~~V~~~~-----------g~i~ad~vV~A~G~~s~~l~~~ 210 (393)
T PRK11728 145 IVDYRAVAEAMAELIQARGGEIRLGAEVTALDE---HANGVVVRTTQ-----------GEYEARTLINCAGLMSDRLAKM 210 (393)
T ss_pred EECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEe---cCCeEEEEECC-----------CEEEeCEEEECCCcchHHHHHH
Confidence 56778899999999999999999886 888872 23345565533 3699999999999998 46676
Q ss_pred hcCC
Q 012488 217 INAG 220 (462)
Q Consensus 217 l~~~ 220 (462)
++.+
T Consensus 211 ~g~~ 214 (393)
T PRK11728 211 AGLE 214 (393)
T ss_pred hCCC
Confidence 6654
No 78
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.15 E-value=6.4e-11 Score=106.45 Aligned_cols=133 Identities=24% Similarity=0.325 Sum_probs=75.7
Q ss_pred EEECCchHHHHHHHHHHHCCCc-EEEEcCCCCCCCCcccccCccccccCCC-ChhhHhcccceEEEEcCCCceEeccCc-
Q 012488 54 AVIGGGPAGGAAAETLAKNGVE-TFLIERKLDNCKPCGGAIPLCMVGEFDL-PLDIIDRKVTKMKMISPSNVAVDIGQT- 130 (462)
Q Consensus 54 vIVGgG~aGl~~A~~L~~~g~~-v~v~E~~~~~~~~~g~~i~~~~l~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~- 130 (462)
+||||||+||++|..|.+.|++ |+|+|+++.. |+... ..-....+ ......... . +. .-........
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~----Gg~w~-~~~~~~~~~~~~~~~~~~-~--~~--~~~~~~~~~~~ 70 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRP----GGVWR-RYYSYTRLHSPSFFSSDF-G--LP--DFESFSFDDSP 70 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSS----TTHHH-CH-TTTT-BSSSCCTGGS-S------CCCHSCHHHHH
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCC----CCeeE-EeCCCCccccCccccccc-c--CC--cccccccccCC
Confidence 6999999999999999999999 9999998632 22211 00000000 000000000 0 00 0000000000
Q ss_pred --ccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecC
Q 012488 131 --LKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGAD 207 (462)
Q Consensus 131 --~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~Ad 207 (462)
..... ...+..+.++|.+.+++.++++++++ |+++.. + ++.+.|+++++ .+++|+.||.|+
T Consensus 71 ~~~~~~~---~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~--~-~~~w~v~~~~~----------~~~~a~~VVlAt 134 (203)
T PF13738_consen 71 EWRWPHD---FPSGEEVLDYLQEYAERFGLEIRFNTRVESVRR--D-GDGWTVTTRDG----------RTIRADRVVLAT 134 (203)
T ss_dssp HHHHSBS---SEBHHHHHHHHHHHHHHTTGGEETS--EEEEEE--E-TTTEEEEETTS-----------EEEEEEEEE--
T ss_pred CCCCCcc---cCCHHHHHHHHHHHHhhcCcccccCCEEEEEEE--e-ccEEEEEEEec----------ceeeeeeEEEee
Confidence 00111 36788899999999999999999888 999984 3 44599999876 789999999999
Q ss_pred CCChH
Q 012488 208 GANSR 212 (462)
Q Consensus 208 G~~S~ 212 (462)
|..|.
T Consensus 135 G~~~~ 139 (203)
T PF13738_consen 135 GHYSH 139 (203)
T ss_dssp -SSCS
T ss_pred eccCC
Confidence 98665
No 79
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.14 E-value=8.7e-09 Score=103.15 Aligned_cols=71 Identities=21% Similarity=0.171 Sum_probs=48.8
Q ss_pred eehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCCChH-hhhhh
Q 012488 140 VRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSR-VAKSI 217 (462)
Q Consensus 140 v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S~-vr~~l 217 (462)
++-..+...|.+.+++.|++++.++ |+++.. .++.+.+.+.+++ ..+..+++||.||.|+|.++. +.+.+
T Consensus 194 ~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~---~~~~~~v~~~~~~-----~~~~~~i~a~~vV~a~G~~s~~l~~~~ 265 (410)
T PRK12409 194 GDIHKFTTGLAAACARLGVQFRYGQEVTSIKT---DGGGVVLTVQPSA-----EHPSRTLEFDGVVVCAGVGSRALAAML 265 (410)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEE---eCCEEEEEEEcCC-----CCccceEecCEEEECCCcChHHHHHHh
Confidence 3445677788899999999999886 988872 2334555554431 001247899999999999975 54444
Q ss_pred c
Q 012488 218 N 218 (462)
Q Consensus 218 ~ 218 (462)
+
T Consensus 266 ~ 266 (410)
T PRK12409 266 G 266 (410)
T ss_pred C
Confidence 4
No 80
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=99.12 E-value=7.7e-10 Score=106.71 Aligned_cols=139 Identities=24% Similarity=0.314 Sum_probs=82.6
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEc-CCCCC-CCCcccccC-------ccccccCC-CChhhHhcccceEEEEcCC
Q 012488 52 RVAVIGGGPAGGAAAETLAKNGVETFLIE-RKLDN-CKPCGGAIP-------LCMVGEFD-LPLDIIDRKVTKMKMISPS 121 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g~~v~v~E-~~~~~-~~~~g~~i~-------~~~l~~~g-~~~~~~~~~~~~~~~~~~~ 121 (462)
||+|||||.||+.||+++++.|.+|+|+. +.+.. ...|...+. .+.++.+| .-..........+++.+.+
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s 80 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS 80 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence 89999999999999999999999999993 33221 123443331 11233333 1111111111122222211
Q ss_pred CceEeccCcccCCCeEEeeehHHHHHHHHHHHHHC-CCEEEcceeEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEe
Q 012488 122 NVAVDIGQTLKPHEYIGMVRREVLDAYLRERAEKN-GASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEV 200 (462)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~-gv~i~~~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~a 200 (462)
+ | ...+.....++|..+.+.+.+.++.. +++|+.+.|+++.. +.+....|.+.+| ..+.+
T Consensus 81 --k---G--pav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~--e~~~v~GV~~~~g----------~~~~a 141 (392)
T PF01134_consen 81 --K---G--PAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIV--ENGKVKGVVTKDG----------EEIEA 141 (392)
T ss_dssp --S------GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEE--CTTEEEEEEETTS----------EEEEE
T ss_pred --C---C--CCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEe--cCCeEEEEEeCCC----------CEEec
Confidence 0 0 11122234799999999999999884 68998888999974 2233344666666 89999
Q ss_pred cEEEecCCC
Q 012488 201 DAVIGADGA 209 (462)
Q Consensus 201 dlvI~AdG~ 209 (462)
|.||.|+|.
T Consensus 142 ~~vVlaTGt 150 (392)
T PF01134_consen 142 DAVVLATGT 150 (392)
T ss_dssp CEEEE-TTT
T ss_pred CEEEEeccc
Confidence 999999998
No 81
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=99.12 E-value=9.7e-09 Score=94.44 Aligned_cols=154 Identities=18% Similarity=0.154 Sum_probs=94.2
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC-CCCCCcccccCcc----------------ccccC---------
Q 012488 48 NRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL-DNCKPCGGAIPLC----------------MVGEF--------- 101 (462)
Q Consensus 48 ~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~-~~~~~~g~~i~~~----------------~l~~~--------- 101 (462)
.+..||+|||||+=||++|+.|+|+|.+++++|+.+ +..+....+.+.- .++.+
T Consensus 5 ~~~~~viiVGAGVfG~stAyeLaK~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~~g~ 84 (399)
T KOG2820|consen 5 VKSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEESGV 84 (399)
T ss_pred ccceeEEEEcccccchHHHHHHHhcCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhhhce
Confidence 356799999999999999999999999999999998 3222222233210 00000
Q ss_pred -----------CCCh-----hhHhccc-ceE--EE--------EcCCCceEeccCcccCCCeEEeeehHHHHHHHHHHHH
Q 012488 102 -----------DLPL-----DIIDRKV-TKM--KM--------ISPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRERAE 154 (462)
Q Consensus 102 -----------g~~~-----~~~~~~~-~~~--~~--------~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~~~ 154 (462)
+..+ .+..+.- .++ ++ .-|.+..++.+..---....++++...-.+.|+..++
T Consensus 85 ~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~~~~~ 164 (399)
T KOG2820|consen 85 KLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQDKAR 164 (399)
T ss_pred eecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHHHHHH
Confidence 0000 0000000 000 00 0011101110000000122336788888899999999
Q ss_pred HCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCCCh
Q 012488 155 KNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANS 211 (462)
Q Consensus 155 ~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S 211 (462)
+.|+.++.++ |..+....+++..+.|.+++| ..+.|+-+|.+.|++=
T Consensus 165 ~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~g----------s~Y~akkiI~t~GaWi 212 (399)
T KOG2820|consen 165 ELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDG----------SIYHAKKIIFTVGAWI 212 (399)
T ss_pred HcCeEEecCcceeeEeeccCCCceeEEEeccC----------CeeecceEEEEecHHH
Confidence 9999999998 777775555666777888887 6799999999999854
No 82
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=99.11 E-value=2.6e-11 Score=121.42 Aligned_cols=149 Identities=21% Similarity=0.201 Sum_probs=32.1
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCC-CCccccc-Cccccc-----cCCCChhhHhcccceEEEEcCCCce
Q 012488 52 RVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNC-KPCGGAI-PLCMVG-----EFDLPLDIIDRKVTKMKMISPSNVA 124 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~-~~~g~~i-~~~~l~-----~~g~~~~~~~~~~~~~~~~~~~~~~ 124 (462)
|||||||||+|++||+.++|.|.+|+|+|+.+... ..+.+++ ...... .-|+..++... ... .... .
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~-~~~---~~~~--~ 74 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNR-LRA---RGGY--P 74 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHS-T------------
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHH-Hhh---hccc--c
Confidence 89999999999999999999999999999987321 1111111 111000 00122222221 111 1000 0
Q ss_pred EeccCcccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEE
Q 012488 125 VDIGQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAV 203 (462)
Q Consensus 125 ~~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlv 203 (462)
... . .........++..+..+|.+.+.+.|++++.++ |.++.. +.+....|.+.+. +...+++|+++
T Consensus 75 ~~~--~-~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~--~~~~i~~V~~~~~-------~g~~~i~A~~~ 142 (428)
T PF12831_consen 75 QED--R-YGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIR--DGGRITGVIVETK-------SGRKEIRAKVF 142 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccc--c-cccccccccccccccccccccccccccccccccccccccc--ccccccccccccc-------ccccccccccc
Confidence 000 0 000000245666677788888888899999998 888873 2223333444432 12489999999
Q ss_pred EecCCCChHhhhhhcC
Q 012488 204 IGADGANSRVAKSINA 219 (462)
Q Consensus 204 I~AdG~~S~vr~~l~~ 219 (462)
|+|+|- ..+....|.
T Consensus 143 IDaTG~-g~l~~~aG~ 157 (428)
T PF12831_consen 143 IDATGD-GDLAALAGA 157 (428)
T ss_dssp ----------------
T ss_pred cccccc-ccccccccc
Confidence 999994 556555553
No 83
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.11 E-value=2.3e-08 Score=99.95 Aligned_cols=38 Identities=32% Similarity=0.479 Sum_probs=34.2
Q ss_pred CCCCCccEEEECCchHHHHHHHHHHHC-CC-cEEEEcCCC
Q 012488 46 LTNRNLRVAVIGGGPAGGAAAETLAKN-GV-ETFLIERKL 83 (462)
Q Consensus 46 ~~~~~~dVvIVGgG~aGl~~A~~L~~~-g~-~v~v~E~~~ 83 (462)
|.+..+||+|||||++|+++|+.|+++ |. +|+|+||..
T Consensus 26 ~~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~ 65 (407)
T TIGR01373 26 EPKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW 65 (407)
T ss_pred CCCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence 456678999999999999999999995 95 999999986
No 84
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.11 E-value=2.4e-08 Score=100.22 Aligned_cols=65 Identities=15% Similarity=0.070 Sum_probs=46.0
Q ss_pred eehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCE-EEEEeccCCccCCCCceeEEEecEEEecCCCChH-hhhh
Q 012488 140 VRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPY-VLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSR-VAKS 216 (462)
Q Consensus 140 v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S~-vr~~ 216 (462)
++-..+...|.+.+++.|++|+.++ |++++. . ++.+ .|.+.+ .+++||.||.|+|.++. +.+.
T Consensus 198 ~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~--~-~~~~~~v~t~~-----------~~~~a~~VV~a~G~~~~~l~~~ 263 (416)
T PRK00711 198 GDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLV--E-GGRITGVQTGG-----------GVITADAYVVALGSYSTALLKP 263 (416)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEe--c-CCEEEEEEeCC-----------cEEeCCEEEECCCcchHHHHHH
Confidence 3445777888888999999999876 888872 2 2333 344332 47899999999999885 3344
Q ss_pred hc
Q 012488 217 IN 218 (462)
Q Consensus 217 l~ 218 (462)
++
T Consensus 264 ~g 265 (416)
T PRK00711 264 LG 265 (416)
T ss_pred hC
Confidence 43
No 85
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=99.09 E-value=1.3e-09 Score=109.69 Aligned_cols=150 Identities=19% Similarity=0.224 Sum_probs=87.5
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCccccc--Cccc-cccCCCChhh--H-hcccceEEEEcCCCc
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAI--PLCM-VGEFDLPLDI--I-DRKVTKMKMISPSNV 123 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i--~~~~-l~~~g~~~~~--~-~~~~~~~~~~~~~~~ 123 (462)
..+|+||||||+||++|..|++.|++|+|||+++.. |+.. .... -+.+++.... . ...+..++...|...
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~v----GG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~ 85 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQV----GGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPREC 85 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCC----cceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhh
Confidence 468999999999999999999999999999998732 3221 1110 0111111100 0 000111111111100
Q ss_pred -eE-eccCccc---C-CCeEEeeehHHHHHHHHHHHHHCCCE--EEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCc
Q 012488 124 -AV-DIGQTLK---P-HEYIGMVRREVLDAYLRERAEKNGAS--VINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGE 194 (462)
Q Consensus 124 -~~-~~~~~~~---~-~~~~~~v~r~~l~~~L~~~~~~~gv~--i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 194 (462)
.+ +++.... . ........+..+.++|.+.+++.|+. |++++ |+++.. .++.+.|++.+++ +.
T Consensus 86 m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~---~~~~w~V~~~~~~------~~ 156 (461)
T PLN02172 86 MGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEP---VDGKWRVQSKNSG------GF 156 (461)
T ss_pred ccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEee---cCCeEEEEEEcCC------Cc
Confidence 00 1100000 0 00011356778999999999999976 77777 998873 3456888876541 22
Q ss_pred eeEEEecEEEecCCCChH
Q 012488 195 KRTLEVDAVIGADGANSR 212 (462)
Q Consensus 195 ~~~~~adlvI~AdG~~S~ 212 (462)
..+..+|.||.|+|..+.
T Consensus 157 ~~~~~~d~VIvAtG~~~~ 174 (461)
T PLN02172 157 SKDEIFDAVVVCNGHYTE 174 (461)
T ss_pred eEEEEcCEEEEeccCCCC
Confidence 346789999999997654
No 86
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.09 E-value=2.4e-08 Score=104.39 Aligned_cols=76 Identities=17% Similarity=0.117 Sum_probs=53.1
Q ss_pred eeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCCChH-hhhh
Q 012488 139 MVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSR-VAKS 216 (462)
Q Consensus 139 ~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S~-vr~~ 216 (462)
.++-..+...|.+.+++.|++++..+ |.++......+..+.|.+.|. .+++..++++|.||.|+|.+|. +++.
T Consensus 228 ~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~-----~tg~~~~i~a~~VVnAaGaws~~l~~~ 302 (627)
T PLN02464 228 QMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDN-----LTGKEFDVYAKVVVNAAGPFCDEVRKM 302 (627)
T ss_pred EEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEEC-----CCCcEEEEEeCEEEECCCHhHHHHHHh
Confidence 46777888899999999999999886 888873110122233455432 1233457999999999999985 6776
Q ss_pred hcC
Q 012488 217 INA 219 (462)
Q Consensus 217 l~~ 219 (462)
++.
T Consensus 303 ~g~ 305 (627)
T PLN02464 303 ADG 305 (627)
T ss_pred ccC
Confidence 653
No 87
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.09 E-value=2.3e-08 Score=99.78 Aligned_cols=207 Identities=14% Similarity=0.115 Sum_probs=112.5
Q ss_pred eeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCCChH-hhhh
Q 012488 139 MVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSR-VAKS 216 (462)
Q Consensus 139 ~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S~-vr~~ 216 (462)
.++-..|.-.....+.+.|.+++..+ |+++.. +++.+.|.+.|. .+|+..+++|+.||-|+|.++- +++.
T Consensus 160 ~vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~r---e~~v~gV~~~D~-----~tg~~~~ira~~VVNAaGpW~d~i~~~ 231 (532)
T COG0578 160 VVDDARLVAANARDAAEHGAEILTYTRVESLRR---EGGVWGVEVEDR-----ETGETYEIRARAVVNAAGPWVDEILEM 231 (532)
T ss_pred eechHHHHHHHHHHHHhcccchhhcceeeeeee---cCCEEEEEEEec-----CCCcEEEEEcCEEEECCCccHHHHHHh
Confidence 35556777788888999999999776 888873 333566777775 4678899999999999999995 6666
Q ss_pred hcCCCCce--EEEEEEE-EecCCcccccccCeeEEEecCCCCCCeEEEEEeCCCceEEEEEeccCC----------CcHH
Q 012488 217 INAGDYDY--AIAFQER-VKIPDEKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHK----------GDIK 283 (462)
Q Consensus 217 l~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p~~~~~~v~~~~~~~~----------~~~~ 283 (462)
.+.....+ ....+.. +.++. +++....+++... .++-..+.+|-.+..-+|.....-. ++++
T Consensus 232 ~~~~~~~~~~vr~skGsHlVv~~----~~~~~~a~~~~~~-~d~r~~f~iP~~~~~liGTTD~~~~~~~~~~~~~~eEid 306 (532)
T COG0578 232 AGLEQSPHIGVRPSKGSHLVVDK----KFPINQAVINRCR-KDGRIVFAIPYEGKTLIGTTDTDYDGDPEDPRITEEEID 306 (532)
T ss_pred hcccCCCCccceeccceEEEecc----cCCCCceEEeecC-CCCceEEEecCCCCEEeeccccccCCCcccCCCCHHHHH
Confidence 65432211 1111111 11121 1122222232221 1455788889877766665432111 1233
Q ss_pred HHHHHHHHhhhcccCCCeEEeEEe--eecCCCCC--CcccCCCEEEEccC--CcCcccCCcccHHHHHHHHHHHHHHHHH
Q 012488 284 KFQLATRNRAKDKILGGKIIRVEA--HPIPEHPR--PRRLSGRVALVGDA--AGYVTKCSGEGIYFAAKSGRMCAEAIIE 357 (462)
Q Consensus 284 ~~~~~~~~~~~~~l~~~~~~~~~~--~~i~~~~~--~~~~~~~v~liGDA--Ah~~~P~~G~G~~~a~~da~~la~~l~~ 357 (462)
.+.+.....+...+...++....+ .|+...-. ++-..-..++.-++ ++.++-..|. +.+-=..|....+.+.+
T Consensus 307 yll~~~~~~~~~~l~~~dI~~syaGVRPL~~~~~~~~~~isR~~~l~~~~~~~glltv~GGK-lTTyR~maE~a~d~v~~ 385 (532)
T COG0578 307 YLLDAVNRYLAPPLTREDILSTYAGVRPLVDDGDDDTSAISRDHVLFDHAELAGLLTVAGGK-LTTYRKMAEDALDAVCE 385 (532)
T ss_pred HHHHHHHhhhhccCChhheeeeeeeeeeccCCCCCchhhccCceEEEecCCCCCeEEEecch-hHHhHHHHHHHHHHHHH
Confidence 344444445556665566654443 34443111 12222335555555 5555544443 33333344444555554
Q ss_pred Hh
Q 012488 358 GS 359 (462)
Q Consensus 358 a~ 359 (462)
.+
T Consensus 386 ~l 387 (532)
T COG0578 386 KL 387 (532)
T ss_pred hc
Confidence 43
No 88
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.08 E-value=1.5e-09 Score=103.75 Aligned_cols=113 Identities=29% Similarity=0.384 Sum_probs=77.8
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEeccCc
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQT 130 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (462)
+||+||||||||+++|..|++.|++|+|||+++. |+.+... . . +. .++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~-----gg~~~~~--------~--------~--~~-------~~~-- 48 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEP-----GGQLTTT--------T--------E--VE-------NYP-- 48 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccCC-----Ccceeec--------c--------c--cc-------ccC--
Confidence 6999999999999999999999999999998752 2211100 0 0 00 000
Q ss_pred ccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcceeEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCCC
Q 012488 131 LKPHEYIGMVRREVLDAYLRERAEKNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGAN 210 (462)
Q Consensus 131 ~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~ 210 (462)
... ..+....+...+.+.+++.|++++...|++++. .+..+.+.+.++ .++++|.||.|+|..
T Consensus 49 --~~~--~~~~~~~~~~~l~~~~~~~gv~~~~~~v~~v~~---~~~~~~v~~~~~----------~~~~~d~liiAtG~~ 111 (300)
T TIGR01292 49 --GFP--EGISGPELMEKMKEQAVKFGAEIIYEEVIKVDL---SDRPFKVKTGDG----------KEYTAKAVIIATGAS 111 (300)
T ss_pred --CCC--CCCChHHHHHHHHHHHHHcCCeEEEEEEEEEEe---cCCeeEEEeCCC----------CEEEeCEEEECCCCC
Confidence 000 012234566788888889999998855888873 334466766555 689999999999986
Q ss_pred hH
Q 012488 211 SR 212 (462)
Q Consensus 211 S~ 212 (462)
..
T Consensus 112 ~~ 113 (300)
T TIGR01292 112 AR 113 (300)
T ss_pred cc
Confidence 53
No 89
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.06 E-value=1.1e-08 Score=108.41 Aligned_cols=60 Identities=13% Similarity=0.106 Sum_probs=47.2
Q ss_pred eeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCCChH
Q 012488 139 MVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSR 212 (462)
Q Consensus 139 ~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S~ 212 (462)
.++...+.+.|.+.+++ |++++.++ |.++.. .++.+.|.+.++ ..+++|.||.|+|.++.
T Consensus 404 ~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~---~~~~~~v~t~~g----------~~~~ad~VV~A~G~~s~ 464 (662)
T PRK01747 404 WLCPAELCRALLALAGQ-QLTIHFGHEVARLER---EDDGWQLDFAGG----------TLASAPVVVLANGHDAA 464 (662)
T ss_pred eeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEE---eCCEEEEEECCC----------cEEECCEEEECCCCCcc
Confidence 46777889999999988 99999887 888873 234566765554 56789999999999885
No 90
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=1.9e-09 Score=101.77 Aligned_cols=114 Identities=29% Similarity=0.398 Sum_probs=78.6
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCc-EEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEec
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKNGVE-TFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDI 127 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~g~~-v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (462)
+.+||+|||||||||++|+.++|+|++ ++|+|+.... +.+.. . . .+.+..+
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~g-----g~~~~-----------~-----~--~venypg----- 53 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPG-----GQLTK-----------T-----T--DVENYPG----- 53 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcC-----Ccccc-----------c-----e--eecCCCC-----
Confidence 468999999999999999999999999 7777765421 00000 0 0 0000000
Q ss_pred cCcccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcceeEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecC
Q 012488 128 GQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGAD 207 (462)
Q Consensus 128 ~~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~Ad 207 (462)
+..-+.-..|.+-+.+++...|+++....|..++. .++.+.|.+.++ . ++|+.||.|+
T Consensus 54 --------~~~~~~g~~L~~~~~~~a~~~~~~~~~~~v~~v~~---~~~~F~v~t~~~----------~-~~ak~vIiAt 111 (305)
T COG0492 54 --------FPGGILGPELMEQMKEQAEKFGVEIVEDEVEKVEL---EGGPFKVKTDKG----------T-YEAKAVIIAT 111 (305)
T ss_pred --------CccCCchHHHHHHHHHHHhhcCeEEEEEEEEEEee---cCceEEEEECCC----------e-EEEeEEEECc
Confidence 01123445677888888889999999876887772 222677877765 4 9999999999
Q ss_pred CCChH
Q 012488 208 GANSR 212 (462)
Q Consensus 208 G~~S~ 212 (462)
|....
T Consensus 112 G~~~~ 116 (305)
T COG0492 112 GAGAR 116 (305)
T ss_pred CCccc
Confidence 98775
No 91
>PLN02661 Putative thiazole synthesis
Probab=99.03 E-value=5e-09 Score=99.55 Aligned_cols=144 Identities=15% Similarity=0.195 Sum_probs=77.8
Q ss_pred CCCccEEEECCchHHHHHHHHHHHC-CCcEEEEcCCCCCCCCcccccC--ccccccCCC---ChhhHhcccceEEEEcCC
Q 012488 48 NRNLRVAVIGGGPAGGAAAETLAKN-GVETFLIERKLDNCKPCGGAIP--LCMVGEFDL---PLDIIDRKVTKMKMISPS 121 (462)
Q Consensus 48 ~~~~dVvIVGgG~aGl~~A~~L~~~-g~~v~v~E~~~~~~~~~g~~i~--~~~l~~~g~---~~~~~~~~~~~~~~~~~~ 121 (462)
..++||+|||||++|+++|+.|++. |++|+|+||.... |++.+ ...+..+-+ ...++.. +
T Consensus 90 ~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~----GGG~~~gg~l~~~~vv~~~a~e~LeE----l------ 155 (357)
T PLN02661 90 YADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSP----GGGAWLGGQLFSAMVVRKPAHLFLDE----L------ 155 (357)
T ss_pred cccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccc----ccceeeCcccccccccccHHHHHHHH----c------
Confidence 4568999999999999999999986 8999999997632 11111 001111100 0111110 0
Q ss_pred CceEeccCcccCCCeEEeeehHHHHHHHHHHHHH-CCCEEEcce-eEEEEecCCCCCCEEEEEeccCC-ccCCC---Cce
Q 012488 122 NVAVDIGQTLKPHEYIGMVRREVLDAYLRERAEK-NGASVINGL-FMKMDLPRNFEQPYVLYYTEYDG-TKGGV---GEK 195 (462)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~-~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~-~~~~~---~~~ 195 (462)
+. .+... ..+....+...+...|.+.+.+ .|++++.++ +.++.. +++....+.+..... ..... .+.
T Consensus 156 GV--~fd~~---dgy~vv~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~--~~grVaGVVvnw~~v~~~~~~~s~~dp 228 (357)
T PLN02661 156 GV--PYDEQ---ENYVVIKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIV--KGDRVGGVVTNWALVAQNHDTQSCMDP 228 (357)
T ss_pred CC--CcccC---CCeeEecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEe--cCCEEEEEEeecchhhhccCCCCccce
Confidence 11 11000 1122122334555667766654 689999998 888873 222222222211000 00001 133
Q ss_pred eEEEecEEEecCCCChH
Q 012488 196 RTLEVDAVIGADGANSR 212 (462)
Q Consensus 196 ~~~~adlvI~AdG~~S~ 212 (462)
..++|+.||.|+|..+.
T Consensus 229 ~~I~AkaVVlATGh~g~ 245 (357)
T PLN02661 229 NVMEAKVVVSSCGHDGP 245 (357)
T ss_pred eEEECCEEEEcCCCCCc
Confidence 57999999999996554
No 92
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.02 E-value=5.7e-08 Score=100.37 Aligned_cols=73 Identities=16% Similarity=0.113 Sum_probs=51.5
Q ss_pred eeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCCChH-hhhh
Q 012488 139 MVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSR-VAKS 216 (462)
Q Consensus 139 ~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S~-vr~~ 216 (462)
.++-..|...+...+++.|+++++.+ |+++.. +.+..+.|.+.+. .+++..+++|+.||.|+|.++. +.+.
T Consensus 145 ~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~--~~~~v~gv~v~d~-----~~g~~~~i~A~~VVnAaG~wa~~l~~~ 217 (546)
T PRK11101 145 TVDPFRLTAANMLDAKEHGAQILTYHEVTGLIR--EGDTVCGVRVRDH-----LTGETQEIHAPVVVNAAGIWGQHIAEY 217 (546)
T ss_pred EECHHHHHHHHHHHHHhCCCEEEeccEEEEEEE--cCCeEEEEEEEEc-----CCCcEEEEECCEEEECCChhHHHHHHh
Confidence 46667788888888999999999887 998873 2222223555442 1244468999999999999985 5555
Q ss_pred hc
Q 012488 217 IN 218 (462)
Q Consensus 217 l~ 218 (462)
.+
T Consensus 218 ~g 219 (546)
T PRK11101 218 AD 219 (546)
T ss_pred cC
Confidence 54
No 93
>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.02 E-value=2.5e-09 Score=105.79 Aligned_cols=145 Identities=21% Similarity=0.229 Sum_probs=90.2
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCce--E
Q 012488 48 NRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVA--V 125 (462)
Q Consensus 48 ~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~--~ 125 (462)
.+..+|+|||||||||++|..|.+.|++|+|+||.+.. |+..... ..-+ .....-.+.++...+.... .
T Consensus 4 ~~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~i----GGlW~y~--~~~~---~~~ss~Y~~l~tn~pKe~~~~~ 74 (448)
T KOG1399|consen 4 MMSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDI----GGLWKYT--ENVE---VVHSSVYKSLRTNLPKEMMGYS 74 (448)
T ss_pred CCCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCc----cceEeec--Cccc---ccccchhhhhhccCChhhhcCC
Confidence 34669999999999999999999999999999998732 2221100 0000 0000001111111111110 0
Q ss_pred eccCcccCCCeEEeeehHHHHHHHHHHHHHCCC--EEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecE
Q 012488 126 DIGQTLKPHEYIGMVRREVLDAYLRERAEKNGA--SVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDA 202 (462)
Q Consensus 126 ~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv--~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adl 202 (462)
+++ ........+.++..+.++|...|++.+. .|.+++ |..++. ..++.+.|.+.+.. +...+.-+|.
T Consensus 75 dfp--f~~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~--~~~gkW~V~~~~~~------~~~~~~ifd~ 144 (448)
T KOG1399|consen 75 DFP--FPERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDS--IDKGKWRVTTKDNG------TQIEEEIFDA 144 (448)
T ss_pred CCC--CcccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEee--ccCCceeEEEecCC------cceeEEEeeE
Confidence 111 1111112246778999999999999984 566777 877873 22268999988752 2246888999
Q ss_pred EEecCCCCh
Q 012488 203 VIGADGANS 211 (462)
Q Consensus 203 vI~AdG~~S 211 (462)
||.|+|-+.
T Consensus 145 VvVctGh~~ 153 (448)
T KOG1399|consen 145 VVVCTGHYV 153 (448)
T ss_pred EEEcccCcC
Confidence 999999883
No 94
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.01 E-value=4.2e-09 Score=105.54 Aligned_cols=136 Identities=21% Similarity=0.276 Sum_probs=84.3
Q ss_pred CCCCCccEEEECCchHHHHHHHHHHHCCCc-EEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCce
Q 012488 46 LTNRNLRVAVIGGGPAGGAAAETLAKNGVE-TFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVA 124 (462)
Q Consensus 46 ~~~~~~dVvIVGgG~aGl~~A~~L~~~g~~-v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 124 (462)
+..+.+||+|||||++|+++|+.|.+.|++ ++||||+... |+.-.. ..++.++..++....
T Consensus 4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~----Gg~W~~--------------~ry~~l~~~~p~~~~ 65 (443)
T COG2072 4 GVATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDV----GGTWRY--------------NRYPGLRLDSPKWLL 65 (443)
T ss_pred CcCCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCc----CCcchh--------------ccCCceEECCchhee
Confidence 456678999999999999999999999999 9999999732 222110 122223332222110
Q ss_pred EeccC-ccc-CCCeEEeeehHHHHHHHHHHHHHCCC--EEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEE
Q 012488 125 VDIGQ-TLK-PHEYIGMVRREVLDAYLRERAEKNGA--SVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLE 199 (462)
Q Consensus 125 ~~~~~-~~~-~~~~~~~v~r~~l~~~L~~~~~~~gv--~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 199 (462)
.+.. +.. ... .-....+.+++.+.++.++. .+.+.+ |..+... .+...+.|++.++. ..+ ++
T Consensus 66 -~~~~~p~~~~~~---~~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~-~~~~~w~V~~~~~~-------~~~-~~ 132 (443)
T COG2072 66 -GFPFLPFRWDEA---FAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWD-EDTKRWTVTTSDGG-------TGE-LT 132 (443)
T ss_pred -ccCCCccCCccc---CCCcccHHHHHHHHHHHcCceeEEEcccceEEEEec-CCCCeEEEEEcCCC-------eee-Ee
Confidence 1100 000 011 12233366777778888774 444555 5555542 34447999988872 222 78
Q ss_pred ecEEEecCCCChH
Q 012488 200 VDAVIGADGANSR 212 (462)
Q Consensus 200 adlvI~AdG~~S~ 212 (462)
+|.||.|+|..+.
T Consensus 133 a~~vV~ATG~~~~ 145 (443)
T COG2072 133 ADFVVVATGHLSE 145 (443)
T ss_pred cCEEEEeecCCCC
Confidence 9999999999774
No 95
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.01 E-value=3.4e-09 Score=103.46 Aligned_cols=72 Identities=24% Similarity=0.265 Sum_probs=55.7
Q ss_pred eeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCCChH-hhhh
Q 012488 139 MVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSR-VAKS 216 (462)
Q Consensus 139 ~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S~-vr~~ 216 (462)
.++-..+...|.+.+++.|+++.+++ |++++. ..++...+.+.+| ++. ++|++||.|.|..|. +.+.
T Consensus 149 iV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~--~~dg~~~~~~~~g--------~~~-~~ak~Vin~AGl~Ad~la~~ 217 (429)
T COG0579 149 IVDPGELTRALAEEAQANGVELRLNTEVTGIEK--QSDGVFVLNTSNG--------EET-LEAKFVINAAGLYADPLAQM 217 (429)
T ss_pred eEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEE--eCCceEEEEecCC--------cEE-EEeeEEEECCchhHHHHHHH
Confidence 57778888999999999999999998 999983 3333455666554 222 999999999999885 7777
Q ss_pred hcCCC
Q 012488 217 INAGD 221 (462)
Q Consensus 217 l~~~~ 221 (462)
.+.+.
T Consensus 218 ~g~~~ 222 (429)
T COG0579 218 AGIPE 222 (429)
T ss_pred hCCCc
Confidence 77653
No 96
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=99.00 E-value=3.2e-09 Score=107.83 Aligned_cols=143 Identities=23% Similarity=0.298 Sum_probs=89.0
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCC--CCCcc---cccCcc-ccccCC----CChhhHhcccceEEEEcC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDN--CKPCG---GAIPLC-MVGEFD----LPLDIIDRKVTKMKMISP 120 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~--~~~~g---~~i~~~-~l~~~g----~~~~~~~~~~~~~~~~~~ 120 (462)
+||+|||||+||+.+|..+++.|.+|+|+|++... ...|. +++... +.+++. ....+.......++..++
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~ 80 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNS 80 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheeccc
Confidence 69999999999999999999999999999997521 11121 111111 223332 122222222222233322
Q ss_pred CCceEeccCcccCCCeEEeeehHHHHHHHHHHHHHC-CCEEEcceeEEEEecCCCCCCEEEEEeccCCccCCCCceeEEE
Q 012488 121 SNVAVDIGQTLKPHEYIGMVRREVLDAYLRERAEKN-GASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLE 199 (462)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~-gv~i~~~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 199 (462)
+.. .... .. ...+++..+...+.+.+++. |++++.+.|+++... +++....|.+.+| ..+.
T Consensus 81 skg-----pAV~-~~-RaQVDr~~y~~~L~e~Le~~pgV~Ile~~Vv~li~e-~~g~V~GV~t~~G----------~~I~ 142 (617)
T TIGR00136 81 SKG-----PAVR-AT-RAQIDKVLYRKAMRNALENQPNLSLFQGEVEDLILE-DNDEIKGVVTQDG----------LKFR 142 (617)
T ss_pred CCC-----Cccc-cc-HHhCCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEe-cCCcEEEEEECCC----------CEEE
Confidence 111 0000 00 12578889999999999887 689988887777531 1233345666665 6899
Q ss_pred ecEEEecCCCCh
Q 012488 200 VDAVIGADGANS 211 (462)
Q Consensus 200 adlvI~AdG~~S 211 (462)
|+.||+|+|.+.
T Consensus 143 Ad~VILATGtfL 154 (617)
T TIGR00136 143 AKAVIITTGTFL 154 (617)
T ss_pred CCEEEEccCccc
Confidence 999999999995
No 97
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.99 E-value=2.8e-09 Score=109.14 Aligned_cols=36 Identities=22% Similarity=0.438 Sum_probs=33.9
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 48 NRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 48 ~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
..++||||||+|++|+++|+.+++.|.+|+|+||.+
T Consensus 59 ~~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~ 94 (506)
T PRK06481 59 KDKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMP 94 (506)
T ss_pred cccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCC
Confidence 347899999999999999999999999999999987
No 98
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=98.98 E-value=6.6e-08 Score=88.98 Aligned_cols=81 Identities=16% Similarity=0.138 Sum_probs=52.5
Q ss_pred eehHHHHHHHHHHHHHCCCEEEcceeEEEEecCCCCCCEEEEEeccC-----------CccCCCCceeEEEecEEEecCC
Q 012488 140 VRREVLDAYLRERAEKNGASVINGLFMKMDLPRNFEQPYVLYYTEYD-----------GTKGGVGEKRTLEVDAVIGADG 208 (462)
Q Consensus 140 v~r~~l~~~L~~~~~~~gv~i~~~~v~~~~~~~~~~~~~~v~~~~~~-----------~~~~~~~~~~~~~adlvI~AdG 208 (462)
.+...|..-+++.+...|+.+..|.|++.++.... .+.+..+++. ......+....++++++|.|.|
T Consensus 240 fdpw~LLs~~rrk~~~lGv~f~~GeV~~Fef~sqr--~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~al~V~aAG 317 (509)
T KOG2853|consen 240 FDPWALLSGIRRKAITLGVQFVKGEVVGFEFESQR--AVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKFALCVNAAG 317 (509)
T ss_pred cCHHHHHHHHHHHhhhhcceEecceEEEEEEeccc--ceeeecccchhhhhhcccceeEEecCchhcCceeEEEEEeccC
Confidence 44556777788888899999999999988863211 1222222220 0000112347899999999999
Q ss_pred CChH-hhhhhcCCCC
Q 012488 209 ANSR-VAKSINAGDY 222 (462)
Q Consensus 209 ~~S~-vr~~l~~~~~ 222 (462)
++|- +++..+++..
T Consensus 318 a~s~QvArlAgIG~g 332 (509)
T KOG2853|consen 318 AWSGQVARLAGIGKG 332 (509)
T ss_pred ccHHHHHHHhccCCC
Confidence 9995 7787776633
No 99
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.96 E-value=9.4e-09 Score=103.93 Aligned_cols=69 Identities=14% Similarity=0.166 Sum_probs=52.6
Q ss_pred eeehHHHHHHHHHHHHH----CC--CEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCCCh
Q 012488 139 MVRREVLDAYLRERAEK----NG--ASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANS 211 (462)
Q Consensus 139 ~v~r~~l~~~L~~~~~~----~g--v~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S 211 (462)
.++-..+...|.+.+++ .| ++++.++ |.++.. ..++.+.|++.+| +++||.||.|.|.+|
T Consensus 207 ~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~--~~~~~~~V~T~~G-----------~i~A~~VVvaAG~~S 273 (497)
T PTZ00383 207 TVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIER--SNDSLYKIHTNRG-----------EIRARFVVVSACGYS 273 (497)
T ss_pred EECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEe--cCCCeEEEEECCC-----------EEEeCEEEECcChhH
Confidence 46777888889999988 77 7788887 999873 3244566765543 699999999999999
Q ss_pred H-hhhhhcCC
Q 012488 212 R-VAKSINAG 220 (462)
Q Consensus 212 ~-vr~~l~~~ 220 (462)
. +.+.++..
T Consensus 274 ~~La~~~Gi~ 283 (497)
T PTZ00383 274 LLFAQKMGYG 283 (497)
T ss_pred HHHHHHhCCC
Confidence 5 77777653
No 100
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.95 E-value=3.7e-09 Score=104.96 Aligned_cols=140 Identities=19% Similarity=0.218 Sum_probs=80.1
Q ss_pred EEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCC---Cccccc---C-----ccccccCCCChhhHhcccce------EE
Q 012488 54 AVIGGGPAGGAAAETLAKNGVETFLIERKLDNCK---PCGGAI---P-----LCMVGEFDLPLDIIDRKVTK------MK 116 (462)
Q Consensus 54 vIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~---~~g~~i---~-----~~~l~~~g~~~~~~~~~~~~------~~ 116 (462)
+|||||++|+++|+.|++.|.+|+|+||++.... ..|.+. . ....+.++-........+.. +.
T Consensus 1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~ 80 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID 80 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence 6999999999999999999999999999873211 122111 0 00001111111111100000 00
Q ss_pred EEcCCCceEeccCcccCCCeEE--eeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCC
Q 012488 117 MISPSNVAVDIGQTLKPHEYIG--MVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVG 193 (462)
Q Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~--~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 193 (462)
++...+..+... .....+ .-....+.+.|.+.+++.|++++.++ |.++.. .++.+.+.+ ++
T Consensus 81 ~~~~~Gv~~~~~----~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~---~~~~~~v~~-~~-------- 144 (400)
T TIGR00275 81 FFESLGLELKVE----EDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKK---DDNGFGVET-SG-------- 144 (400)
T ss_pred HHHHcCCeeEEe----cCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEe---cCCeEEEEE-CC--------
Confidence 111111111110 011111 11346788889999999999999887 888862 233455555 33
Q ss_pred ceeEEEecEEEecCCCCh
Q 012488 194 EKRTLEVDAVIGADGANS 211 (462)
Q Consensus 194 ~~~~~~adlvI~AdG~~S 211 (462)
.++.+|.||.|+|..|
T Consensus 145 --~~i~ad~VIlAtG~~s 160 (400)
T TIGR00275 145 --GEYEADKVILATGGLS 160 (400)
T ss_pred --cEEEcCEEEECCCCcc
Confidence 5789999999999987
No 101
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.94 E-value=1.1e-08 Score=105.86 Aligned_cols=113 Identities=22% Similarity=0.310 Sum_probs=75.7
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEecc
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIG 128 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (462)
+.+||+||||||||+++|..|+++|++|+|||++. .|+.+... . .+....+
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~~-----~GG~~~~~--------~----------~i~~~pg------ 53 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKDD-----FGGQITIT--------S----------EVVNYPG------ 53 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCC-----CCceEEec--------c----------ccccCCC------
Confidence 35899999999999999999999999999999864 12211100 0 0000000
Q ss_pred CcccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcceeEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCC
Q 012488 129 QTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADG 208 (462)
Q Consensus 129 ~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG 208 (462)
.. .+....+.+.+.+.+++.|++++.+.|..+.. ++..+.|...+ ..+.++.||.|+|
T Consensus 54 -----~~---~~~~~~l~~~l~~~~~~~gv~~~~~~V~~i~~---~~~~~~V~~~~-----------g~~~a~~lVlATG 111 (555)
T TIGR03143 54 -----IL---NTTGPELMQEMRQQAQDFGVKFLQAEVLDVDF---DGDIKTIKTAR-----------GDYKTLAVLIATG 111 (555)
T ss_pred -----Cc---CCCHHHHHHHHHHHHHHcCCEEeccEEEEEEe---cCCEEEEEecC-----------CEEEEeEEEECCC
Confidence 00 12334567778888888999998766877762 22334555433 3578999999999
Q ss_pred CChH
Q 012488 209 ANSR 212 (462)
Q Consensus 209 ~~S~ 212 (462)
.++.
T Consensus 112 a~p~ 115 (555)
T TIGR03143 112 ASPR 115 (555)
T ss_pred CccC
Confidence 8764
No 102
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.92 E-value=9.2e-09 Score=104.67 Aligned_cols=35 Identities=34% Similarity=0.423 Sum_probs=33.2
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
.++||||||+|++|+++|+.++++|.+|+|+||.+
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~ 37 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAP 37 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 46899999999999999999999999999999986
No 103
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.92 E-value=4.3e-08 Score=99.51 Aligned_cols=75 Identities=19% Similarity=0.180 Sum_probs=54.0
Q ss_pred eeehHHHHHHHHHHHHHCC-CEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCCChH-hhh
Q 012488 139 MVRREVLDAYLRERAEKNG-ASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSR-VAK 215 (462)
Q Consensus 139 ~v~r~~l~~~L~~~~~~~g-v~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S~-vr~ 215 (462)
.++-..+.+.|.+.+++.| ++++.++ |.+++. .+++.+.+.+.+. .+++..+++|++||.|.|.+|. +++
T Consensus 179 ~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~--~~dg~~~v~~~~~-----~~G~~~~i~A~~VVvaAGg~s~~L~~ 251 (494)
T PRK05257 179 DVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKR--NDDGSWTVTVKDL-----KTGEKRTVRAKFVFIGAGGGALPLLQ 251 (494)
T ss_pred EECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEE--CCCCCEEEEEEEc-----CCCceEEEEcCEEEECCCcchHHHHH
Confidence 5777789999999999887 8999888 998873 3333466665431 1122236999999988888774 777
Q ss_pred hhcCC
Q 012488 216 SINAG 220 (462)
Q Consensus 216 ~l~~~ 220 (462)
.++..
T Consensus 252 ~~Gi~ 256 (494)
T PRK05257 252 KSGIP 256 (494)
T ss_pred HcCCC
Confidence 77765
No 104
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.91 E-value=2.1e-08 Score=103.40 Aligned_cols=164 Identities=13% Similarity=0.068 Sum_probs=87.0
Q ss_pred CCCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCC---CCCcccccCc-------------cccccC-CC-ChhhH
Q 012488 47 TNRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDN---CKPCGGAIPL-------------CMVGEF-DL-PLDII 108 (462)
Q Consensus 47 ~~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~---~~~~g~~i~~-------------~~l~~~-g~-~~~~~ 108 (462)
-..++||+|||+|+|||++|+.+++.|.+|+|+||.... ....++++.. .+++.- ++ .++++
T Consensus 13 ~~~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v 92 (541)
T PRK07804 13 WRDAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAV 92 (541)
T ss_pred cccccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHH
Confidence 356789999999999999999999999999999998732 1111222210 011100 11 11111
Q ss_pred h----ccc--------ceEEEEc-CCCceEeccCcccCCCeEEee----ehHHHHHHHHHHHHHCCCEEEcce-eEEEEe
Q 012488 109 D----RKV--------TKMKMIS-PSNVAVDIGQTLKPHEYIGMV----RREVLDAYLRERAEKNGASVINGL-FMKMDL 170 (462)
Q Consensus 109 ~----~~~--------~~~~~~~-~~~~~~~~~~~~~~~~~~~~v----~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~ 170 (462)
. ... .++.+.. .++.................. .-..+.+.|.+.+++.|++++.++ +.++..
T Consensus 93 ~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i~~~~~v~~Li~ 172 (541)
T PRK07804 93 RSLVAEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDIREHALALDLLT 172 (541)
T ss_pred HHHHHHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEEEECeEeeeeEE
Confidence 1 000 1122211 111110000000000011111 234677888899999999999888 888873
Q ss_pred cCCCCCC-EEEEEeccCCccCCCCceeEEEecEEEecCCCChHhh
Q 012488 171 PRNFEQP-YVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSRVA 214 (462)
Q Consensus 171 ~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S~vr 214 (462)
++++. +.+.+.+-. ....+....+.|+.||.|+|..+.++
T Consensus 173 --~~~g~v~Gv~~~~~~--~~~~~g~~~i~Ak~VIlATGG~~~~~ 213 (541)
T PRK07804 173 --DGTGAVAGVTLHVLG--EGSPDGVGAVHAPAVVLATGGLGQLY 213 (541)
T ss_pred --cCCCeEEEEEEEecc--CCCCCcEEEEEcCeEEECCCCCCCCC
Confidence 22222 223332100 00012235789999999999998653
No 105
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.91 E-value=3.7e-09 Score=107.46 Aligned_cols=146 Identities=25% Similarity=0.280 Sum_probs=78.0
Q ss_pred CCCCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCc--ccccCccccccCCCChhhHhcccceE-EEEcCC-
Q 012488 46 LTNRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPC--GGAIPLCMVGEFDLPLDIIDRKVTKM-KMISPS- 121 (462)
Q Consensus 46 ~~~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~--g~~i~~~~l~~~g~~~~~~~~~~~~~-~~~~~~- 121 (462)
|...++||+||||||+|+.+|+.|+++|.+|+|+|+++...-.| .++++...|... ...+.. .... .+....
T Consensus 1 ~~~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~--~~~~~~--~~~~~~~~~~~~ 76 (461)
T PRK05249 1 MHMYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREA--VLRLIG--FNQNPLYSSYRV 76 (461)
T ss_pred CCCccccEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccccCCCCHHHHHHH--HHHHHH--HhhhhhhcccCC
Confidence 44557999999999999999999999999999999964221111 123333222110 000000 0000 000000
Q ss_pred CceEeccCcccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcceeEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEec
Q 012488 122 NVAVDIGQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVD 201 (462)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ad 201 (462)
...+++......... + ...+.+.+.+.+++.|++++.+++..+. ...+.|...+| +..++++|
T Consensus 77 ~~~~~~~~l~~~~~~--~--~~~~~~~~~~~~~~~~v~~~~g~~~~~~-----~~~~~v~~~~g--------~~~~~~~d 139 (461)
T PRK05249 77 KLRITFADLLARADH--V--INKQVEVRRGQYERNRVDLIQGRARFVD-----PHTVEVECPDG--------EVETLTAD 139 (461)
T ss_pred cCccCHHHHHHHHHH--H--HHHHHHHHHHHHHHCCCEEEEEEEEEec-----CCEEEEEeCCC--------ceEEEEcC
Confidence 000111000000000 0 0123345666677889999988765443 23455654443 22479999
Q ss_pred EEEecCCCChH
Q 012488 202 AVIGADGANSR 212 (462)
Q Consensus 202 lvI~AdG~~S~ 212 (462)
.||.|+|....
T Consensus 140 ~lviATGs~p~ 150 (461)
T PRK05249 140 KIVIATGSRPY 150 (461)
T ss_pred EEEEcCCCCCC
Confidence 99999997654
No 106
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.91 E-value=1.2e-08 Score=106.72 Aligned_cols=36 Identities=31% Similarity=0.437 Sum_probs=33.7
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 48 NRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 48 ~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
..++||+|||+|.|||++|+.+++.|.+|+|+||..
T Consensus 48 ~~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~~ 83 (635)
T PLN00128 48 DHTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKLF 83 (635)
T ss_pred eeecCEEEECccHHHHHHHHHHHhcCCcEEEEEcCC
Confidence 356899999999999999999999999999999986
No 107
>PRK06116 glutathione reductase; Validated
Probab=98.91 E-value=1.6e-09 Score=109.72 Aligned_cols=139 Identities=20% Similarity=0.234 Sum_probs=73.8
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC-CCCCCcccccCccccccCC-CChhhHhcccceEEEEcCCCceEec
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL-DNCKPCGGAIPLCMVGEFD-LPLDIIDRKVTKMKMISPSNVAVDI 127 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~-~~~~~~g~~i~~~~l~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (462)
+|||+||||||||+++|+.|+++|++|+|+|+.. ......-++++.+.|.... +...+ ......+.+ ......+++
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~~~GG~c~n~gciP~k~l~~~~~~~~~~-~~~~~~~g~-~~~~~~~~~ 81 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVALIEAKRLGGTCVNVGCVPKKLMWYGAQIAEAF-HDYAPGYGF-DVTENKFDW 81 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccchhhhhhccCcchHHHHHHHHHHHHHH-HhHHHhcCC-CCCCCCcCH
Confidence 6899999999999999999999999999999864 1101112234433221110 00000 000000000 000001111
Q ss_pred cCcccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcceeEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecC
Q 012488 128 GQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGAD 207 (462)
Q Consensus 128 ~~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~Ad 207 (462)
......... . ...+.+.+.+.+.+.|++++.+++..+. . ..|.+ ++ .++++|.||.|+
T Consensus 82 ~~~~~~~~~--~--~~~~~~~~~~~l~~~gv~~~~g~~~~v~-----~--~~v~~-~g----------~~~~~d~lViAT 139 (450)
T PRK06116 82 AKLIANRDA--Y--IDRLHGSYRNGLENNGVDLIEGFARFVD-----A--HTVEV-NG----------ERYTADHILIAT 139 (450)
T ss_pred HHHHHHHHH--H--HHHHHHHHHHHHHhCCCEEEEEEEEEcc-----C--CEEEE-CC----------EEEEeCEEEEec
Confidence 100000000 0 1123344555566789999988765443 1 23444 44 679999999999
Q ss_pred CCChH
Q 012488 208 GANSR 212 (462)
Q Consensus 208 G~~S~ 212 (462)
|....
T Consensus 140 Gs~p~ 144 (450)
T PRK06116 140 GGRPS 144 (450)
T ss_pred CCCCC
Confidence 97653
No 108
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.90 E-value=1.7e-08 Score=90.10 Aligned_cols=33 Identities=36% Similarity=0.491 Sum_probs=31.6
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEcCCCC
Q 012488 52 RVAVIGGGPAGGAAAETLAKNGVETFLIERKLD 84 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 84 (462)
+|+|||+||+|+++|..|+..|++|+||||...
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~G 35 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRG 35 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCC
Confidence 699999999999999999999999999999874
No 109
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.90 E-value=2.2e-09 Score=108.43 Aligned_cols=139 Identities=14% Similarity=0.162 Sum_probs=76.1
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC-CCCCCcccccCccccccC-CCChhhHhcccceEEEEcCCCceEec
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL-DNCKPCGGAIPLCMVGEF-DLPLDIIDRKVTKMKMISPSNVAVDI 127 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~-~~~~~~g~~i~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (462)
+|||+||||||||+++|+.++++|++|+|+|++. ...-...++++.+.|-.- .+...+ . ....+.+. ..+..+++
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~-~-~~~~~g~~-~~~~~~~~ 78 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEEPRVGGTCVIRGCVPKKLMVYGSTFGGEF-E-DAAGYGWT-VGKARFDW 78 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCccCceeecCCcCchHHHHHHHHHHHHH-h-hhHhcCcC-CCCCCcCH
Confidence 5899999999999999999999999999999864 111111234444332110 000000 0 00111000 01111121
Q ss_pred cCcccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcceeEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecC
Q 012488 128 GQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGAD 207 (462)
Q Consensus 128 ~~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~Ad 207 (462)
........ -....+.+.+.+.+++.|++++.+.+..+. . ..+.+. .++ .++++|.||.|+
T Consensus 79 ~~~~~~~~----~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~----~-~~v~v~-~~g----------~~~~~d~lIiAT 138 (446)
T TIGR01424 79 KKLLQKKD----DEIARLSGLYKRLLANAGVELLEGRARLVG----P-NTVEVL-QDG----------TTYTAKKILIAV 138 (446)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHhCCcEEEEEEEEEec----C-CEEEEe-cCC----------eEEEcCEEEEec
Confidence 11000000 001234455666777889999988765554 1 123332 233 579999999999
Q ss_pred CCCh
Q 012488 208 GANS 211 (462)
Q Consensus 208 G~~S 211 (462)
|...
T Consensus 139 Gs~p 142 (446)
T TIGR01424 139 GGRP 142 (446)
T ss_pred CCcC
Confidence 9765
No 110
>PRK14694 putative mercuric reductase; Provisional
Probab=98.90 E-value=3.4e-09 Score=107.77 Aligned_cols=39 Identities=38% Similarity=0.522 Sum_probs=36.1
Q ss_pred CCCCCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 45 KLTNRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 45 ~~~~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
+|+..++||+||||||||+++|..|++.|.+|+|||++.
T Consensus 1 ~~~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~~ 39 (468)
T PRK14694 1 MMSDNNLHIAVIGSGGSAMAAALKATERGARVTLIERGT 39 (468)
T ss_pred CCCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEccc
Confidence 466788999999999999999999999999999999875
No 111
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.90 E-value=1.8e-08 Score=103.62 Aligned_cols=114 Identities=25% Similarity=0.316 Sum_probs=80.2
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEec
Q 012488 48 NRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDI 127 (462)
Q Consensus 48 ~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (462)
...+||+||||||||+++|+.|++.|++|+|+|+.. |+.+. ...++ .+ +
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~~------GG~~~----~~~~~--------------~~-------~ 257 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAERF------GGQVL----DTMGI--------------EN-------F 257 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC------CCeee----ccCcc--------------cc-------c
Confidence 346899999999999999999999999999997532 22110 00000 00 0
Q ss_pred cCcccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEec
Q 012488 128 GQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGA 206 (462)
Q Consensus 128 ~~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~A 206 (462)
. ... ......+.+.|.+.+++.|++++.++ |.++.. .++.+.|.+.++ .++++|.||.|
T Consensus 258 ~----~~~---~~~~~~l~~~l~~~~~~~gv~i~~~~~V~~I~~---~~~~~~V~~~~g----------~~i~a~~vViA 317 (517)
T PRK15317 258 I----SVP---ETEGPKLAAALEEHVKEYDVDIMNLQRASKLEP---AAGLIEVELANG----------AVLKAKTVILA 317 (517)
T ss_pred C----CCC---CCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEe---cCCeEEEEECCC----------CEEEcCEEEEC
Confidence 0 000 12345688889999999999999876 888873 234567776665 67999999999
Q ss_pred CCCChH
Q 012488 207 DGANSR 212 (462)
Q Consensus 207 dG~~S~ 212 (462)
+|.++.
T Consensus 318 tG~~~r 323 (517)
T PRK15317 318 TGARWR 323 (517)
T ss_pred CCCCcC
Confidence 998763
No 112
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.89 E-value=3.7e-08 Score=99.28 Aligned_cols=75 Identities=17% Similarity=0.137 Sum_probs=53.3
Q ss_pred eeehHHHHHHHHHHHHH-CCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCCChH-hhh
Q 012488 139 MVRREVLDAYLRERAEK-NGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSR-VAK 215 (462)
Q Consensus 139 ~v~r~~l~~~L~~~~~~-~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S~-vr~ 215 (462)
.++...+.+.|.+.+.+ .|+++++++ |.++.. .+++.+++++.+. ..++..+++||+||.|.|.+|. +.+
T Consensus 180 ~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~--~~d~~w~v~v~~t-----~~g~~~~i~Ad~VV~AAGawS~~La~ 252 (497)
T PRK13339 180 DVNFGALTRKLAKHLESHPNAQVKYNHEVVDLER--LSDGGWEVTVKDR-----NTGEKREQVADYVFIGAGGGAIPLLQ 252 (497)
T ss_pred ecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEE--CCCCCEEEEEEec-----CCCceEEEEcCEEEECCCcchHHHHH
Confidence 57777888888888865 489999888 888873 3245577764321 0122236899999999999985 777
Q ss_pred hhcCC
Q 012488 216 SINAG 220 (462)
Q Consensus 216 ~l~~~ 220 (462)
.+|..
T Consensus 253 ~~Gi~ 257 (497)
T PRK13339 253 KSGIP 257 (497)
T ss_pred HcCCC
Confidence 77765
No 113
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.88 E-value=1.2e-08 Score=103.45 Aligned_cols=75 Identities=17% Similarity=0.164 Sum_probs=55.5
Q ss_pred eeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCCChH-hhhh
Q 012488 139 MVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSR-VAKS 216 (462)
Q Consensus 139 ~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S~-vr~~ 216 (462)
.++...+...|.+.+++.|+++++++ |.+++. .+++.+.+++.+. .+++..+++||.||.|.|.+|. +++.
T Consensus 174 ~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~--~~~~~v~v~~~~~-----~~g~~~~i~A~~VV~AAG~~s~~La~~ 246 (483)
T TIGR01320 174 DVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKR--QSDGSWTVTVKNT-----RTGGKRTLNTRFVFVGAGGGALPLLQK 246 (483)
T ss_pred EECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEE--cCCCeEEEEEeec-----cCCceEEEECCEEEECCCcchHHHHHH
Confidence 57888899999999999999999987 998872 2334466654331 1133357999999999988774 7888
Q ss_pred hcCC
Q 012488 217 INAG 220 (462)
Q Consensus 217 l~~~ 220 (462)
++..
T Consensus 247 ~Gi~ 250 (483)
T TIGR01320 247 SGIP 250 (483)
T ss_pred cCCC
Confidence 7765
No 114
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.88 E-value=1.3e-08 Score=103.36 Aligned_cols=36 Identities=33% Similarity=0.481 Sum_probs=33.5
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 48 NRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 48 ~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
..+|||+||||||||+++|..|+++|++|+|+|++.
T Consensus 2 ~~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~ 37 (462)
T PRK06416 2 AFEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK 37 (462)
T ss_pred CccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 356899999999999999999999999999999875
No 115
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.88 E-value=1.3e-07 Score=93.90 Aligned_cols=37 Identities=32% Similarity=0.473 Sum_probs=34.4
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCC
Q 012488 48 NRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLD 84 (462)
Q Consensus 48 ~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 84 (462)
.+++||+|||||++|+++|+.|+++|.+|+|+|++..
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~G~~V~vie~~~~ 38 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAGEA 38 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHcCCEEEEEecCcc
Confidence 4578999999999999999999999999999999883
No 116
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.87 E-value=5.9e-09 Score=105.67 Aligned_cols=151 Identities=18% Similarity=0.260 Sum_probs=81.7
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCC--CcccccCc-----c--------ccccC-CC-ChhhHh----
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCK--PCGGAIPL-----C--------MVGEF-DL-PLDIID---- 109 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~--~~g~~i~~-----~--------~l~~~-g~-~~~~~~---- 109 (462)
+||+|||||+||+++|+.+++.|.+|+|+||...... ...+++.. . .++.- ++ ..+++.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~~ 81 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVIS 81 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 6999999999999999999999999999999862211 11122210 0 00000 01 111111
Q ss_pred cccceEEEEcCCCceEeccCcccCCCe--EEe---eehHHHHHHHHHHHHHCCCEEEcceeEEEEecCCCCCCEE-EEEe
Q 012488 110 RKVTKMKMISPSNVAVDIGQTLKPHEY--IGM---VRREVLDAYLRERAEKNGASVINGLFMKMDLPRNFEQPYV-LYYT 183 (462)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---v~r~~l~~~L~~~~~~~gv~i~~~~v~~~~~~~~~~~~~~-v~~~ 183 (462)
+....+.++...|..++.........+ ... .....+.+.|.+.+++.|++++.+.++++.. +++.+. +..
T Consensus 82 ~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~v~~l~~---~~g~v~Gv~~- 157 (466)
T PRK08401 82 KSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRGFAEELAI---KNGKAYGVFL- 157 (466)
T ss_pred HHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEeEeEEEEe---eCCEEEEEEE-
Confidence 000000010001111100000000001 001 1224678889999999999998767777652 233332 332
Q ss_pred ccCCccCCCCceeEEEecEEEecCCCChHhhh
Q 012488 184 EYDGTKGGVGEKRTLEVDAVIGADGANSRVAK 215 (462)
Q Consensus 184 ~~~~~~~~~~~~~~~~adlvI~AdG~~S~vr~ 215 (462)
++ ..+.++.||.|+|..|....
T Consensus 158 ~g----------~~i~a~~VVLATGG~~~~~~ 179 (466)
T PRK08401 158 DG----------ELLKFDATVIATGGFSGLFK 179 (466)
T ss_pred CC----------EEEEeCeEEECCCcCcCCCC
Confidence 33 57899999999999997643
No 117
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.87 E-value=1.3e-08 Score=102.19 Aligned_cols=65 Identities=18% Similarity=0.075 Sum_probs=45.2
Q ss_pred ehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCCChH
Q 012488 141 RREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSR 212 (462)
Q Consensus 141 ~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S~ 212 (462)
....+...|.+.+++.|++|+.++ ++++.. +++..+.|.+.+. ..++...++|+-||.|+|..+.
T Consensus 139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~--e~g~V~Gv~~~~~-----~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVDIRFNTRVTDLIT--EDGRVTGVVAENP-----ADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEESEEEEEEEE--ETTEEEEEEEEET-----TTCEEEEEEESEEEE----BGG
T ss_pred cHHHHHHHHHHHHhhcCeeeeccceeeeEEE--eCCceeEEEEEEC-----CCCeEEEEeeeEEEeccCcccc
Confidence 446788899999999999999998 999884 3333334555521 2366678999999999999995
No 118
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.87 E-value=2.6e-09 Score=107.82 Aligned_cols=35 Identities=37% Similarity=0.600 Sum_probs=32.8
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
++|||+||||||+|+.+|+.|++.|.+|+|+||..
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~ 35 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAKK 35 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEecccc
Confidence 36899999999999999999999999999999864
No 119
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.86 E-value=2.5e-08 Score=102.47 Aligned_cols=113 Identities=26% Similarity=0.366 Sum_probs=77.8
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEec
Q 012488 48 NRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDI 127 (462)
Q Consensus 48 ~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (462)
...+||+||||||||+++|+.|++.|++|+|+|... |+.+. ...++ .. + .
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~~~------GG~~~----~~~~~---------~~--~---------~ 259 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAERI------GGQVK----DTVGI---------EN--L---------I 259 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC------CCccc----cCcCc---------cc--c---------c
Confidence 446899999999999999999999999999997431 22110 00000 00 0 0
Q ss_pred cCcccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEec
Q 012488 128 GQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGA 206 (462)
Q Consensus 128 ~~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~A 206 (462)
+ .. ......+.+.+.+.+++.|++++.+. |.++.. +++.+.+++.++ ..+.+|.||.|
T Consensus 260 ~-----~~---~~~~~~l~~~l~~~l~~~gv~i~~~~~V~~I~~---~~~~~~v~~~~g----------~~i~~d~lIlA 318 (515)
T TIGR03140 260 S-----VP---YTTGSQLAANLEEHIKQYPIDLMENQRAKKIET---EDGLIVVTLESG----------EVLKAKSVIVA 318 (515)
T ss_pred c-----cC---CCCHHHHHHHHHHHHHHhCCeEEcCCEEEEEEe---cCCeEEEEECCC----------CEEEeCEEEEC
Confidence 0 00 02234577778888888899999876 888862 233466766665 57999999999
Q ss_pred CCCCh
Q 012488 207 DGANS 211 (462)
Q Consensus 207 dG~~S 211 (462)
+|.+.
T Consensus 319 tGa~~ 323 (515)
T TIGR03140 319 TGARW 323 (515)
T ss_pred CCCCc
Confidence 99864
No 120
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.86 E-value=5.4e-09 Score=106.45 Aligned_cols=145 Identities=18% Similarity=0.207 Sum_probs=77.8
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC-CCCCCcccccCccccccC-CCChhhHhcccceEEEEcCCCceEe
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL-DNCKPCGGAIPLCMVGEF-DLPLDIIDRKVTKMKMISPSNVAVD 126 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~-~~~~~~g~~i~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 126 (462)
..|||+||||||||+++|+.|+++|.+|+|+|+.. ...-..-++++.+.|-.. .....+.. ...+.+.. ....++
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~--~~~~g~~~-~~~~~~ 79 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKGKLGGTCLHKGCIPSKALLHSAEVFQTAKK--ASPFGISV-SGPALD 79 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCcceEcCCcCchHHHHHHHHHHHHHHH--HHhcCccC-CCCccC
Confidence 46899999999999999999999999999999864 111111234443322110 00000000 00000000 000111
Q ss_pred ccCcccCCCeEEeeehHH----HHHHHHHHHHHCCCEEEcceeEEEEec--CCCCCCEEEEEeccCCccCCCCceeEEEe
Q 012488 127 IGQTLKPHEYIGMVRREV----LDAYLRERAEKNGASVINGLFMKMDLP--RNFEQPYVLYYTEYDGTKGGVGEKRTLEV 200 (462)
Q Consensus 127 ~~~~~~~~~~~~~v~r~~----l~~~L~~~~~~~gv~i~~~~v~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~~a 200 (462)
+... +-++.. +.+...+.+++.|++++.+++..+... ..+++.+.|...+| +..++++
T Consensus 80 ~~~~--------~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g--------~~~~~~~ 143 (472)
T PRK05976 80 FAKV--------QERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETG--------ENEMIIP 143 (472)
T ss_pred HHHH--------HHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCC--------ceEEEEc
Confidence 1100 001111 223334455677999999987666521 01122455655443 2357999
Q ss_pred cEEEecCCCChH
Q 012488 201 DAVIGADGANSR 212 (462)
Q Consensus 201 dlvI~AdG~~S~ 212 (462)
|.||.|+|....
T Consensus 144 d~lViATGs~p~ 155 (472)
T PRK05976 144 ENLLIATGSRPV 155 (472)
T ss_pred CEEEEeCCCCCC
Confidence 999999998663
No 121
>PTZ00058 glutathione reductase; Provisional
Probab=98.85 E-value=6.8e-09 Score=106.63 Aligned_cols=56 Identities=29% Similarity=0.346 Sum_probs=42.1
Q ss_pred CCCCCCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC-CCCCCcccccCccccc
Q 012488 44 PKLTNRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL-DNCKPCGGAIPLCMVG 99 (462)
Q Consensus 44 ~~~~~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~-~~~~~~g~~i~~~~l~ 99 (462)
+.+..++|||+||||||+|.++|+.+++.|.+|+|+|++. ......-++++.+.|.
T Consensus 42 ~~~~~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~~~GGtCln~GCiPsK~l~ 98 (561)
T PTZ00058 42 KKKPRMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKDYLGGTCVNVGCVPKKIMF 98 (561)
T ss_pred ccCCCccccEEEECcCHHHHHHHHHHHHcCCeEEEEecccccccccccCCCCCchhh
Confidence 3445578999999999999999999999999999999975 2211222356655443
No 122
>PLN02576 protoporphyrinogen oxidase
Probab=98.85 E-value=6.3e-06 Score=84.68 Aligned_cols=35 Identities=40% Similarity=0.515 Sum_probs=32.7
Q ss_pred CCccEEEECCchHHHHHHHHHHHC-CCcEEEEcCCC
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKN-GVETFLIERKL 83 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~-g~~v~v~E~~~ 83 (462)
.++||+|||||++||++|+.|+++ |++|+|+|+++
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~ 46 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARD 46 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCC
Confidence 346899999999999999999999 99999999987
No 123
>PRK06370 mercuric reductase; Validated
Probab=98.84 E-value=3.6e-09 Score=107.51 Aligned_cols=35 Identities=40% Similarity=0.513 Sum_probs=32.8
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
.+|||+||||||+|+++|+.|++.|.+|+|+|+..
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~~ 38 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAGLGMKVALIERGL 38 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEEEecCc
Confidence 35999999999999999999999999999999875
No 124
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.84 E-value=1.5e-08 Score=103.32 Aligned_cols=142 Identities=25% Similarity=0.275 Sum_probs=83.2
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCc-eE-eccC
Q 012488 52 RVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNV-AV-DIGQ 129 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~-~~-~~~~ 129 (462)
+|+|||||++||++|..|.+.|+++++|||.+.. |+......-..-|. ...++.+....+... .+ +++.
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~i----GG~W~~~~~~~~g~-----~~~y~sl~~n~sk~~~~fsdfp~ 73 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDI----GGLWRYTENPEDGR-----SSVYDSLHTNTSKEMMAFSDFPF 73 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSS----SGGGCHSTTCCCSE-----GGGSTT-B-SS-GGGSCCTTS-H
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCeEEecCCCC----CccCeeCCcCCCCc-----cccccceEEeeCchHhcCCCcCC
Confidence 7999999999999999999999999999998732 32221000000000 000111111111000 00 1111
Q ss_pred cccCCCeEEeeehHHHHHHHHHHHHHCCC--EEEcce-eEEEEecCC--CCCCEEEEEeccCCccCCCCceeEEEecEEE
Q 012488 130 TLKPHEYIGMVRREVLDAYLRERAEKNGA--SVINGL-FMKMDLPRN--FEQPYVLYYTEYDGTKGGVGEKRTLEVDAVI 204 (462)
Q Consensus 130 ~~~~~~~~~~v~r~~l~~~L~~~~~~~gv--~i~~~~-v~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI 204 (462)
+.+... ..++.++.++|.+.|++.+. .|.+++ |++++...+ ..+.+.|++.++ +...+..+|.||
T Consensus 74 p~~~p~---f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~-------g~~~~~~fD~Vv 143 (531)
T PF00743_consen 74 PEDYPD---FPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTEND-------GKEETEEFDAVV 143 (531)
T ss_dssp CCCCSS---SEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTT-------TEEEEEEECEEE
T ss_pred CCCCCC---CCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecC-------CeEEEEEeCeEE
Confidence 111112 47889999999999999885 678888 999874322 124688876543 455667799999
Q ss_pred ecCCCChH
Q 012488 205 GADGANSR 212 (462)
Q Consensus 205 ~AdG~~S~ 212 (462)
.|+|.++.
T Consensus 144 vatG~~~~ 151 (531)
T PF00743_consen 144 VATGHFSK 151 (531)
T ss_dssp EEE-SSSC
T ss_pred EcCCCcCC
Confidence 99999885
No 125
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.83 E-value=1.4e-08 Score=105.33 Aligned_cols=159 Identities=17% Similarity=0.159 Sum_probs=86.1
Q ss_pred CCCCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCC---CCCcccccCcc-----------------ccc--cCCC
Q 012488 46 LTNRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDN---CKPCGGAIPLC-----------------MVG--EFDL 103 (462)
Q Consensus 46 ~~~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~---~~~~g~~i~~~-----------------~l~--~~g~ 103 (462)
|..+++||+|||+|.|||++|+.+++.|.+|+|+||.+.. ....++++... .+. ..-.
T Consensus 1 ~~~~~~DVvVVG~G~AGl~AAl~Aae~G~~V~lveK~~~~~g~s~~a~Ggi~~~~~~~~~~~Ds~e~~~~d~~~~g~~~~ 80 (566)
T PRK06452 1 MEKIEYDAVVIGGGLAGLMSAHEIASAGFKVAVISKVFPTRSHSAAAEGGIAAYIPGNSDPNDNPDYMTYDTVKGGDYLV 80 (566)
T ss_pred CCcccCcEEEECccHHHHHHHHHHHHCCCcEEEEEccCCCCCcchhhccchhhhccccCCCcccHHHHHHHHHHhhccCC
Confidence 3456789999999999999999999999999999998621 11122222100 000 0001
Q ss_pred ChhhHh----ccc--------ceEEEEc-CCCceEeccCcccC--CCeEEee---ehHHHHHHHHHHHHHCCCEEEcce-
Q 012488 104 PLDIID----RKV--------TKMKMIS-PSNVAVDIGQTLKP--HEYIGMV---RREVLDAYLRERAEKNGASVINGL- 164 (462)
Q Consensus 104 ~~~~~~----~~~--------~~~~~~~-~~~~~~~~~~~~~~--~~~~~~v---~r~~l~~~L~~~~~~~gv~i~~~~- 164 (462)
.++++. ... .++.|.. +++. +... .... ....... .-..+...|.+.+.+.|+++++++
T Consensus 81 d~~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~-~~~~-~~gg~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~ 158 (566)
T PRK06452 81 DQDAAELLSNKSGEIVMLLERWGALFNRQPDGR-VAVR-YFGGQTYPRTRFVGDKTGMALLHTLFERTSGLNVDFYNEWF 158 (566)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCccccCCCCc-Eecc-CCcCccCCeeEecCCCCHHHHHHHHHHHHHhCCCEEEeCcE
Confidence 111110 000 0111111 1111 0000 0000 0010011 123466778888888899999888
Q ss_pred eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCCChHh
Q 012488 165 FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSRV 213 (462)
Q Consensus 165 v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S~v 213 (462)
++++.. +++..+.|...+. .+++...+.|+-||.|+|..+.+
T Consensus 159 ~~~Li~--~~g~v~Gv~~~~~-----~~g~~~~i~AkaVVLATGG~~~l 200 (566)
T PRK06452 159 SLDLVT--DNKKVVGIVAMQM-----KTLTPFFFKTKAVVLATGGMGML 200 (566)
T ss_pred EEEEEE--ECCEEEEEEEEEC-----CCCeEEEEEeCeEEECCCccccc
Confidence 888873 2222222434332 12445689999999999998854
No 126
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.83 E-value=3.1e-08 Score=103.25 Aligned_cols=38 Identities=29% Similarity=0.457 Sum_probs=34.8
Q ss_pred CCCCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 46 LTNRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 46 ~~~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
+...++||+|||||+|||++|+.+++.|.+|+|+||..
T Consensus 8 ~~~~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~~ 45 (598)
T PRK09078 8 IIDHKYDVVVVGAGGAGLRATLGMAEAGLKTACITKVF 45 (598)
T ss_pred ccccccCEEEECccHHHHHHHHHHHHcCCcEEEEEccC
Confidence 44567899999999999999999999999999999986
No 127
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.83 E-value=1.6e-08 Score=102.19 Aligned_cols=152 Identities=16% Similarity=0.132 Sum_probs=83.6
Q ss_pred cEEEECCchHHHHHHHHHHHCC-CcEEEEcCCCCC---CCCcccccC---ccccccCCCC-------------------h
Q 012488 52 RVAVIGGGPAGGAAAETLAKNG-VETFLIERKLDN---CKPCGGAIP---LCMVGEFDLP-------------------L 105 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g-~~v~v~E~~~~~---~~~~g~~i~---~~~l~~~g~~-------------------~ 105 (462)
||||||||+||+++|+.++++| .+|+|+||.+.. ...+++.+. ....+..++. .
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 80 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVLLEKMPVIGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKDTLKGGRGINDP 80 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEEEecCCCCCCcccccCceeecCCCHHHHhcCCCCCHHHHHHHHHHhcCCCCCH
Confidence 8999999999999999999999 999999998732 112233331 0011111111 1
Q ss_pred hhHhc----ccceEEEEcCCCceEec------cCcccCCCe---EEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEec
Q 012488 106 DIIDR----KVTKMKMISPSNVAVDI------GQTLKPHEY---IGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLP 171 (462)
Q Consensus 106 ~~~~~----~~~~~~~~~~~~~~~~~------~~~~~~~~~---~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~ 171 (462)
+++.. ....+.++. .+..+.. +....+... .....-..+.+.|.+.+++.|++++.++ |+++..
T Consensus 81 ~l~~~~~~~~~~~i~wl~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~- 158 (439)
T TIGR01813 81 ELVRILAEESADAVDWLQ-DGVGARLDDLIQLGGHSVPRAHRPTGGAGSGAEIVQKLYKKAKKEGIDTRLNSKVEDLIQ- 158 (439)
T ss_pred HHHHHHHhccHHHHHHHH-hCCCeeeccccccCCcCCCccccCCCCCCCHHHHHHHHHHHHHHcCCEEEeCCEeeEeEE-
Confidence 11100 000000111 0110100 000000000 0012234678889999999999999988 988873
Q ss_pred CCCCCCE-EEEEeccCCccCCCCceeEEEecEEEecCCCChH
Q 012488 172 RNFEQPY-VLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSR 212 (462)
Q Consensus 172 ~~~~~~~-~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S~ 212 (462)
++++.+ .|.+.+. .+....+.++.||.|+|..+.
T Consensus 159 -~~~g~v~Gv~~~~~------~g~~~~~~a~~VVlAtGg~~~ 193 (439)
T TIGR01813 159 -DDQGTVVGVVVKGK------GKGIYIKAAKAVVLATGGFGS 193 (439)
T ss_pred -CCCCcEEEEEEEeC------CCeEEEEecceEEEecCCCCC
Confidence 333323 3444332 133346889999999998886
No 128
>PRK07121 hypothetical protein; Validated
Probab=98.83 E-value=5.5e-08 Score=99.58 Aligned_cols=36 Identities=33% Similarity=0.487 Sum_probs=33.9
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 48 NRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 48 ~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
..++||||||+|.||+++|+.+++.|.+|+|+||.+
T Consensus 18 ~~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~ 53 (492)
T PRK07121 18 DDEADVVVVGFGAAGACAAIEAAAAGARVLVLERAA 53 (492)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 357899999999999999999999999999999987
No 129
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.83 E-value=2.9e-08 Score=103.69 Aligned_cols=158 Identities=16% Similarity=0.126 Sum_probs=86.3
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCC---CCcccccCcc---------------cccc-CCC-Chhh
Q 012488 48 NRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNC---KPCGGAIPLC---------------MVGE-FDL-PLDI 107 (462)
Q Consensus 48 ~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~---~~~g~~i~~~---------------~l~~-~g~-~~~~ 107 (462)
..++||+|||||.|||++|+.+++.|.+|+|+||..... ...++++... .++. -++ .+++
T Consensus 27 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~~~~~g~t~~a~Ggi~a~~~~~~~Ds~e~~~~D~~~~g~~~~d~~l 106 (617)
T PTZ00139 27 DHTYDAVVVGAGGAGLRAALGLVELGYKTACISKLFPTRSHTVAAQGGINAALGNMTEDDWRWHAYDTVKGSDWLGDQDA 106 (617)
T ss_pred ccccCEEEECccHHHHHHHHHHHHcCCcEEEEeccCCCCCCchhhcCCeeEEecCCCCCCHHHHHHHHHHHhCCCCCHHH
Confidence 457899999999999999999999999999999987321 1122222110 0000 011 1111
Q ss_pred Hh----ccc--------ceEEEEc-CCCceEe--ccCc-cc---CCCeEEee-----ehHHHHHHHHHHHHHCCCEEEcc
Q 012488 108 ID----RKV--------TKMKMIS-PSNVAVD--IGQT-LK---PHEYIGMV-----RREVLDAYLRERAEKNGASVING 163 (462)
Q Consensus 108 ~~----~~~--------~~~~~~~-~~~~~~~--~~~~-~~---~~~~~~~v-----~r~~l~~~L~~~~~~~gv~i~~~ 163 (462)
+. ... .++.|.. .++.... ++.. .. .......+ .-..+...|.+.+++.|++++.+
T Consensus 107 v~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~~~ 186 (617)
T PTZ00139 107 IQYMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRCAAAADRTGHAMLHTLYGQSLKYDCNFFIE 186 (617)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEeCCCCcEeecccCcccccccCCCccceeeecCCCcHHHHHHHHHHHHHhCCCEEEec
Confidence 11 000 1122211 1111100 0000 00 00000011 12467788889899999999999
Q ss_pred e-eEEEEecCCCCCCE-EEEEeccCCccCCCCceeEEEecEEEecCCCChH
Q 012488 164 L-FMKMDLPRNFEQPY-VLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSR 212 (462)
Q Consensus 164 ~-v~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S~ 212 (462)
+ +.++.. ++++.+ .|...+. .+++...+.|+.||.|+|..+.
T Consensus 187 ~~~~~Li~--~~~g~v~Gv~~~~~-----~~g~~~~i~AkaVVLATGG~~~ 230 (617)
T PTZ00139 187 YFALDLIM--DEDGECRGVIAMSM-----EDGSIHRFRAHYTVIATGGYGR 230 (617)
T ss_pred eEEEEEEE--CCCCEEEEEEEEEC-----CCCeEEEEECCcEEEeCCCCcc
Confidence 8 888773 223322 2332221 1355578999999999998875
No 130
>PLN02546 glutathione reductase
Probab=98.82 E-value=1.1e-08 Score=105.12 Aligned_cols=141 Identities=13% Similarity=0.138 Sum_probs=76.6
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC------CCCCCcc-----cccCccccccC-CCChhhHhcccceE
Q 012488 48 NRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL------DNCKPCG-----GAIPLCMVGEF-DLPLDIIDRKVTKM 115 (462)
Q Consensus 48 ~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~------~~~~~~g-----~~i~~~~l~~~-g~~~~~~~~~~~~~ 115 (462)
..+|||+||||||+|..+|..++++|.+|+|+|+.- .....-| +|++.+.|..- .+...+.. ...+
T Consensus 77 ~~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~--~~~~ 154 (558)
T PLN02546 77 HYDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEE--SRGF 154 (558)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHh--hhhc
Confidence 346999999999999999999999999999999621 1111112 23443333211 00011100 0111
Q ss_pred EEEcCCCceEeccCcccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcceeEEEEecCCCCCCEEEEEeccCCccCCCCce
Q 012488 116 KMISPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVGEK 195 (462)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 195 (462)
.+.......++|........ -....+...+.+.+++.|++++.+.+..+. . . .|.+ +|
T Consensus 155 g~~~~~~~~~d~~~~~~~k~----~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd----~-~--~V~v-~G---------- 212 (558)
T PLN02546 155 GWKYETEPKHDWNTLIANKN----AELQRLTGIYKNILKNAGVTLIEGRGKIVD----P-H--TVDV-DG---------- 212 (558)
T ss_pred CcccCCCCCCCHHHHHHHHH----HHHHHHHHHHHHHHHhCCcEEEEeEEEEcc----C-C--EEEE-CC----------
Confidence 11000001122211100000 001234556667777889999998765554 1 1 2333 44
Q ss_pred eEEEecEEEecCCCChH
Q 012488 196 RTLEVDAVIGADGANSR 212 (462)
Q Consensus 196 ~~~~adlvI~AdG~~S~ 212 (462)
.++.+|.||.|+|....
T Consensus 213 ~~~~~D~LVIATGs~p~ 229 (558)
T PLN02546 213 KLYTARNILIAVGGRPF 229 (558)
T ss_pred EEEECCEEEEeCCCCCC
Confidence 67999999999997664
No 131
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.82 E-value=2.2e-08 Score=102.20 Aligned_cols=154 Identities=17% Similarity=0.163 Sum_probs=84.1
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCC---CCcccccCc--------c-----cccc-CCC-ChhhHh--
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNC---KPCGGAIPL--------C-----MVGE-FDL-PLDIID-- 109 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~---~~~g~~i~~--------~-----~l~~-~g~-~~~~~~-- 109 (462)
++||+|||+|+|||++|+.+++.|. |+|+||.+... ...++++.. + +++. -++ .++++.
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~G~-V~lleK~~~~~g~s~~a~Ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~ 80 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQGR-VIVLSKAPVTEGNSFYAQGGIAAVLAETDSIDSHVEDTLAAGAGICDREAVEFV 80 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhCCC-EEEEEccCCCCCcchhcCcCeeeeecCCCCHHHHHHHHHHhcCCcCCHHHHHHH
Confidence 4699999999999999999999997 99999996211 111122210 0 0100 011 111111
Q ss_pred --ccc--------ceEEEEc-CCCceEeccCc-ccCCCeEEee---ehHHHHHHHHHHHHH-CCCEEEcce-eEEEEecC
Q 012488 110 --RKV--------TKMKMIS-PSNVAVDIGQT-LKPHEYIGMV---RREVLDAYLRERAEK-NGASVINGL-FMKMDLPR 172 (462)
Q Consensus 110 --~~~--------~~~~~~~-~~~~~~~~~~~-~~~~~~~~~v---~r~~l~~~L~~~~~~-~gv~i~~~~-v~~~~~~~ 172 (462)
... .++.|.. ..+. +..... -......... .-..+.+.|.+.+++ .|++++.++ ++++..
T Consensus 81 ~~~~~~~i~~L~~~Gv~f~~~~~g~-~~~~~~gg~~~~r~~~~~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~-- 157 (488)
T TIGR00551 81 VSDARSAVQWLVDQGVLFDRHEQGS-YALTREGGHSYRRILHAADATGREVITTLVKKALNHPNIRIIEGENALDLLI-- 157 (488)
T ss_pred HHhHHHHHHHHHHcCCcceeCCCCC-ccccCCCCcCCCeEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECeEeeeeec--
Confidence 000 0111211 0110 000000 0001111111 234678888888887 689999998 888872
Q ss_pred CCCCCEE-EEEeccCCccCCCCceeEEEecEEEecCCCChHhhh
Q 012488 173 NFEQPYV-LYYTEYDGTKGGVGEKRTLEVDAVIGADGANSRVAK 215 (462)
Q Consensus 173 ~~~~~~~-v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S~vr~ 215 (462)
+ ++.+. +.+.+. +....+.++.||.|+|..|.+..
T Consensus 158 ~-~g~v~Gv~~~~~-------~~~~~i~A~~VVlAtGG~~~~~~ 193 (488)
T TIGR00551 158 E-TGRVVGVWVWNR-------ETVETCHADAVVLATGGAGKLYQ 193 (488)
T ss_pred c-CCEEEEEEEEEC-------CcEEEEEcCEEEECCCcccCCCC
Confidence 2 33333 444432 22357899999999999997543
No 132
>PRK10262 thioredoxin reductase; Provisional
Probab=98.82 E-value=6.3e-08 Score=93.58 Aligned_cols=116 Identities=28% Similarity=0.384 Sum_probs=75.4
Q ss_pred CCCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEe
Q 012488 47 TNRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVD 126 (462)
Q Consensus 47 ~~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 126 (462)
++.++||+||||||||+.+|..|+++|++|+++|+... |+.+... . .+. .
T Consensus 3 ~~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~~~-----gg~~~~~----------------~--~~~-------~ 52 (321)
T PRK10262 3 TTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEK-----GGQLTTT----------------T--EVE-------N 52 (321)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEeecC-----CCceecC----------------c--eEC-------C
Confidence 34578999999999999999999999999999996431 2211100 0 000 0
Q ss_pred ccCcccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcceeEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEec
Q 012488 127 IGQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGA 206 (462)
Q Consensus 127 ~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~A 206 (462)
++. ... .++...+.+.+.+.+...+.++..+.|..++. .++.+.++..+ ..+.+|.||.|
T Consensus 53 ~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~---~~~~~~v~~~~-----------~~~~~d~vilA 112 (321)
T PRK10262 53 WPG--DPN----DLTGPLLMERMHEHATKFETEIIFDHINKVDL---QNRPFRLTGDS-----------GEYTCDALIIA 112 (321)
T ss_pred CCC--CCC----CCCHHHHHHHHHHHHHHCCCEEEeeEEEEEEe---cCCeEEEEecC-----------CEEEECEEEEC
Confidence 000 000 12334566777888888888888777767762 23345554322 36899999999
Q ss_pred CCCChH
Q 012488 207 DGANSR 212 (462)
Q Consensus 207 dG~~S~ 212 (462)
+|.+..
T Consensus 113 tG~~~~ 118 (321)
T PRK10262 113 TGASAR 118 (321)
T ss_pred CCCCCC
Confidence 998753
No 133
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.81 E-value=5.7e-06 Score=83.94 Aligned_cols=32 Identities=44% Similarity=0.608 Sum_probs=30.5
Q ss_pred cEEEECCchHHHHHHHHHHHCC--CcEEEEcCCC
Q 012488 52 RVAVIGGGPAGGAAAETLAKNG--VETFLIERKL 83 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g--~~v~v~E~~~ 83 (462)
+|+|||||+|||++|+.|+++| ++|+|+|+++
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~ 35 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASD 35 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCC
Confidence 7999999999999999999988 8999999987
No 134
>PRK07233 hypothetical protein; Provisional
Probab=98.81 E-value=1.8e-06 Score=87.06 Aligned_cols=32 Identities=47% Similarity=0.612 Sum_probs=31.1
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 52 RVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
+|+|||||++||++|+.|+++|++|+|+|+++
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~ 32 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADD 32 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCC
Confidence 59999999999999999999999999999998
No 135
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.81 E-value=3.4e-06 Score=85.91 Aligned_cols=33 Identities=42% Similarity=0.471 Sum_probs=31.6
Q ss_pred ccEEEECCchHHHHHHHHHHHC----CCcEEEEcCCC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKN----GVETFLIERKL 83 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~----g~~v~v~E~~~ 83 (462)
.||+|||||++||++|+.|+++ |++|+|+|+++
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~ 39 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASD 39 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCC
Confidence 5899999999999999999999 99999999987
No 136
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.81 E-value=9.1e-09 Score=104.53 Aligned_cols=144 Identities=25% Similarity=0.278 Sum_probs=75.4
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCc--ccccCccccccC-CCChhhHhcccceEEEEcCCCceE
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPC--GGAIPLCMVGEF-DLPLDIIDRKVTKMKMISPSNVAV 125 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~--g~~i~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~ 125 (462)
.+|||+||||||+|+.+|..|++.|.+|+|+|+++...-.| -++++.+.|-.. .+...+. ....+.+. .....+
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~--~~~~~g~~-~~~~~~ 79 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAK--ALAEHGIV-FGEPKI 79 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHh--hhhhcCcc-cCCCCc
Confidence 35899999999999999999999999999999874221111 224443322111 0000000 00000000 011111
Q ss_pred eccCcccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcceeEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEe
Q 012488 126 DIGQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIG 205 (462)
Q Consensus 126 ~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~ 205 (462)
++......... .+ ..+...+...++..|++++.+++..+. ...+.|...+ ++..++++|.||.
T Consensus 80 ~~~~~~~~~~~--~~--~~~~~~~~~~~~~~gV~~~~g~a~~~~-----~~~v~v~~~~--------g~~~~~~~d~lVi 142 (471)
T PRK06467 80 DIDKMRARKEK--VV--KQLTGGLAGMAKGRKVTVVNGLGKFTG-----GNTLEVTGED--------GKTTVIEFDNAII 142 (471)
T ss_pred CHHHHHHHHHH--HH--HHHHHHHHHHHHhCCCEEEEEEEEEcc-----CCEEEEecCC--------CceEEEEcCEEEE
Confidence 11100000000 00 112233445566779999988754332 2335554333 2235799999999
Q ss_pred cCCCChH
Q 012488 206 ADGANSR 212 (462)
Q Consensus 206 AdG~~S~ 212 (462)
|+|....
T Consensus 143 ATGs~p~ 149 (471)
T PRK06467 143 AAGSRPI 149 (471)
T ss_pred eCCCCCC
Confidence 9997653
No 137
>PLN02507 glutathione reductase
Probab=98.81 E-value=1.5e-08 Score=103.41 Aligned_cols=146 Identities=14% Similarity=0.111 Sum_probs=77.5
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC------CCCCCccc-----ccCcccccc-CCCChhhHhcccceE
Q 012488 48 NRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL------DNCKPCGG-----AIPLCMVGE-FDLPLDIIDRKVTKM 115 (462)
Q Consensus 48 ~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~------~~~~~~g~-----~i~~~~l~~-~g~~~~~~~~~~~~~ 115 (462)
..+|||+||||||+|+.+|..+++.|.+|+|+|+.. .....-|. +++.+.|-. ..+...+.. ...+
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~--~~~~ 100 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFED--AKNY 100 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHH--HHhc
Confidence 446999999999999999999999999999999731 00011111 333222211 000000000 0111
Q ss_pred EEEcCCCceEeccCcccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcceeEEEEecCCCCCCEEEEEeccCCccCCCCce
Q 012488 116 KMISPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVGEK 195 (462)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 195 (462)
.+.......+++........ -....+...+.+.+...|++++.+.+..+. ...+.|+..+| +.
T Consensus 101 G~~~~~~~~id~~~~~~~~~----~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd-----~~~v~V~~~~g--------~~ 163 (499)
T PLN02507 101 GWEINEKVDFNWKKLLQKKT----DEILRLNGIYKRLLANAGVKLYEGEGKIVG-----PNEVEVTQLDG--------TK 163 (499)
T ss_pred CcccCCCCccCHHHHHHHHH----HHHHHHHHHHHHHHHhCCcEEEEEEEEEec-----CCEEEEEeCCC--------cE
Confidence 00000000111111000000 001123444555666789999998766554 22466665553 23
Q ss_pred eEEEecEEEecCCCChH
Q 012488 196 RTLEVDAVIGADGANSR 212 (462)
Q Consensus 196 ~~~~adlvI~AdG~~S~ 212 (462)
.++++|.||.|+|....
T Consensus 164 ~~~~~d~LIIATGs~p~ 180 (499)
T PLN02507 164 LRYTAKHILIATGSRAQ 180 (499)
T ss_pred EEEEcCEEEEecCCCCC
Confidence 46899999999997653
No 138
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.80 E-value=1.7e-08 Score=105.12 Aligned_cols=38 Identities=21% Similarity=0.321 Sum_probs=35.2
Q ss_pred CCCCCccEEEECCchHHHHHHHHHHHCC---CcEEEEcCCC
Q 012488 46 LTNRNLRVAVIGGGPAGGAAAETLAKNG---VETFLIERKL 83 (462)
Q Consensus 46 ~~~~~~dVvIVGgG~aGl~~A~~L~~~g---~~v~v~E~~~ 83 (462)
|...++||+|||||+|||++|+.+++.| .+|+|+||..
T Consensus 1 ~~~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~ 41 (577)
T PRK06069 1 MEVLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQ 41 (577)
T ss_pred CCceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEccc
Confidence 4567789999999999999999999998 8999999987
No 139
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=98.78 E-value=2.4e-07 Score=92.49 Aligned_cols=69 Identities=19% Similarity=0.151 Sum_probs=53.0
Q ss_pred eeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCCChH-hhhh
Q 012488 139 MVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSR-VAKS 216 (462)
Q Consensus 139 ~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S~-vr~~ 216 (462)
.++...+.+.|...|++.|+.|++.. |+++... .++...|.+..| .+++..+|.|+|.+.. |-+.
T Consensus 183 ~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~--~~~~~gVeT~~G-----------~iet~~~VNaaGvWAr~Vg~m 249 (856)
T KOG2844|consen 183 VMDPAGLCQALARAASALGALVIENCPVTGLHVE--TDKFGGVETPHG-----------SIETECVVNAAGVWAREVGAM 249 (856)
T ss_pred ccCHHHHHHHHHHHHHhcCcEEEecCCcceEEee--cCCccceeccCc-----------ceecceEEechhHHHHHhhhh
Confidence 57778899999999999999999988 9998853 333345666654 7999999999999885 3333
Q ss_pred hcCC
Q 012488 217 INAG 220 (462)
Q Consensus 217 l~~~ 220 (462)
.+.+
T Consensus 250 ~gvk 253 (856)
T KOG2844|consen 250 AGVK 253 (856)
T ss_pred cCCc
Confidence 3444
No 140
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.78 E-value=7.4e-08 Score=100.31 Aligned_cols=38 Identities=26% Similarity=0.532 Sum_probs=35.0
Q ss_pred CCCCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 46 LTNRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 46 ~~~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
|...++||+|||+|.|||++|+.+++.|.+|+|+||..
T Consensus 8 ~~~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~~ 45 (591)
T PRK07057 8 LPRRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVF 45 (591)
T ss_pred cccccCCEEEECccHHHHHHHHHHHHCCCcEEEEeccC
Confidence 45567899999999999999999999999999999975
No 141
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.78 E-value=6.1e-08 Score=101.65 Aligned_cols=35 Identities=34% Similarity=0.432 Sum_probs=32.8
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
+++||+|||||.|||++|+.+++.|.+|+|+||..
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~ 68 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCYQD 68 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEecCC
Confidence 46899999999999999999999999999999865
No 142
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.78 E-value=2.4e-08 Score=104.16 Aligned_cols=152 Identities=17% Similarity=0.165 Sum_probs=82.3
Q ss_pred CCCccEEEECCchHHHHHHHHHHHC--CCcEEEEcCCCCCCCCc--cc--ccCcc---------c----cccC-CC-Chh
Q 012488 48 NRNLRVAVIGGGPAGGAAAETLAKN--GVETFLIERKLDNCKPC--GG--AIPLC---------M----VGEF-DL-PLD 106 (462)
Q Consensus 48 ~~~~dVvIVGgG~aGl~~A~~L~~~--g~~v~v~E~~~~~~~~~--g~--~i~~~---------~----l~~~-g~-~~~ 106 (462)
..++||+|||||+|||++|+.+++. |.+|+|+||........ ++ ++... . ++.. ++ .++
T Consensus 9 ~~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~~s~~~a~G~~~~~~~~~~~ds~e~~~~d~~~~~~~~~d~~ 88 (608)
T PRK06854 9 EVDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIKRSGAVAQGLSAINAYIGEGETPEDYVRYVRKDLMGIVRED 88 (608)
T ss_pred eeEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcCCCcccccCccccccccccCCCHHHHHHHHHHhccCCCCHH
Confidence 3468999999999999999999998 99999999987321111 11 11100 0 0000 01 111
Q ss_pred hHh----cc--------cceEEEEc-CCCceEeccCcccCCCeEEeeehHHHHHHHHHHHHHCC-CEEEcce-eEEEEec
Q 012488 107 IID----RK--------VTKMKMIS-PSNVAVDIGQTLKPHEYIGMVRREVLDAYLRERAEKNG-ASVINGL-FMKMDLP 171 (462)
Q Consensus 107 ~~~----~~--------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~g-v~i~~~~-v~~~~~~ 171 (462)
++. .. -.++.+.. ..+... .............+...|.+.+++.| ++++.++ |.++..
T Consensus 89 lv~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~------~~g~~~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~- 161 (608)
T PRK06854 89 LVYDIARHVDSVVHLFEEWGLPIWKDENGKYV------RRGRWQIMINGESYKPIVAEAAKKALGDNVLNRVFITDLLV- 161 (608)
T ss_pred HHHHHHHhHHHHHHHHHHcCCeeeecCCCCcc------ccCCccCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEE-
Confidence 110 00 01112211 111100 00000001234567788888888876 9999888 888763
Q ss_pred CCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCCChH
Q 012488 172 RNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSR 212 (462)
Q Consensus 172 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S~ 212 (462)
+++..+.|...+. .+++...+.|+.||.|+|..+.
T Consensus 162 -~~g~v~Gv~~~~~-----~~g~~~~i~AkaVILATGG~~~ 196 (608)
T PRK06854 162 -DDNRIAGAVGFSV-----RENKFYVFKAKAVIVATGGAAG 196 (608)
T ss_pred -eCCEEEEEEEEEc-----cCCcEEEEECCEEEECCCchhh
Confidence 2222112222111 1234458999999999998874
No 143
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.78 E-value=4.2e-08 Score=102.16 Aligned_cols=64 Identities=23% Similarity=0.206 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCE-EEEEeccCCccCCCCceeEEEecEEEecCCCChHhhh
Q 012488 144 VLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPY-VLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSRVAK 215 (462)
Q Consensus 144 ~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S~vr~ 215 (462)
.+...|.+.+++.|+++++++ ++++.. + ++.+ .|...+. ..++...+.|+.||.|+|..+.+..
T Consensus 130 ~i~~~L~~~~~~~gv~i~~~~~v~~L~~--~-~g~v~Gv~~~~~-----~~g~~~~i~Ak~VVlAtGG~~~~~~ 195 (566)
T TIGR01812 130 ALLHTLYEQCLKLGVSFFNEYFALDLIH--D-DGRVRGVVAYDL-----KTGEIVFFRAKAVVLATGGYGRIYK 195 (566)
T ss_pred HHHHHHHHHHHHcCCEEEeccEEEEEEE--e-CCEEEEEEEEEC-----CCCcEEEEECCeEEECCCcccCCCC
Confidence 566778888888899999988 888873 2 2322 2333221 1234467999999999999986543
No 144
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.77 E-value=4.6e-08 Score=101.65 Aligned_cols=36 Identities=31% Similarity=0.357 Sum_probs=32.6
Q ss_pred CCCccEEEECCchHHHHHHHHHHHC--CCcEEEEcCCC
Q 012488 48 NRNLRVAVIGGGPAGGAAAETLAKN--GVETFLIERKL 83 (462)
Q Consensus 48 ~~~~dVvIVGgG~aGl~~A~~L~~~--g~~v~v~E~~~ 83 (462)
+.++||+|||||.|||++|+.+++. |.+|+|+||..
T Consensus 2 t~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~ 39 (582)
T PRK09231 2 TFQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVY 39 (582)
T ss_pred ceeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccC
Confidence 4568999999999999999999987 58999999986
No 145
>PLN02815 L-aspartate oxidase
Probab=98.76 E-value=3.4e-08 Score=102.29 Aligned_cols=43 Identities=26% Similarity=0.282 Sum_probs=36.0
Q ss_pred ccCCCCCCCCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 40 AKTSPKLTNRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 40 ~~~~~~~~~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
++..-.-...++||+|||+|.|||++|+.+++.| +|+|+||.+
T Consensus 19 ~~~~~~~~~~~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~ 61 (594)
T PLN02815 19 ASRLDDESTKYFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDE 61 (594)
T ss_pred ccccccCcccccCEEEECccHHHHHHHHHHhhCC-CEEEEECCC
Confidence 3333333455789999999999999999999999 999999987
No 146
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.75 E-value=3.2e-08 Score=99.85 Aligned_cols=34 Identities=35% Similarity=0.441 Sum_probs=32.6
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
+|||+||||||||+++|..|++.|.+|+|+|+++
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~ 36 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEESK 36 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecCC
Confidence 6899999999999999999999999999999975
No 147
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.74 E-value=4.5e-08 Score=102.52 Aligned_cols=38 Identities=29% Similarity=0.414 Sum_probs=35.0
Q ss_pred CCCCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 46 LTNRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 46 ~~~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
|..+++||+|||+|.||+++|+.+++.|.+|+|+||..
T Consensus 4 ~~~~~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~ 41 (626)
T PRK07803 4 VERHSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSL 41 (626)
T ss_pred ccceeecEEEECcCHHHHHHHHHHHHCCCCEEEEeccC
Confidence 44567899999999999999999999999999999986
No 148
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.74 E-value=2e-08 Score=101.89 Aligned_cols=34 Identities=32% Similarity=0.522 Sum_probs=31.9
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
+|||+||||||||+.+|+.++++|.+|+|+|++.
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~ 36 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRS 36 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 4899999999999999999999999999999753
No 149
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.73 E-value=1.8e-08 Score=101.03 Aligned_cols=34 Identities=21% Similarity=0.325 Sum_probs=31.5
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
+++||||||+|.|||++|+.++ .|.+|+|+||.+
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~ 36 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGK 36 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-cCCCEEEEecCC
Confidence 5689999999999999999985 799999999987
No 150
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.73 E-value=8.3e-08 Score=94.54 Aligned_cols=33 Identities=30% Similarity=0.441 Sum_probs=31.7
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
+||+|||||++|+++|+.|+++|.+|+|+|+..
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~vle~~~ 33 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTVIERSS 33 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 599999999999999999999999999999986
No 151
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.73 E-value=3.3e-08 Score=99.81 Aligned_cols=34 Identities=41% Similarity=0.480 Sum_probs=32.5
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
+|||+||||||||+.+|+.|+++|++|+|+|+.+
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~ 36 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSN 36 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCC
Confidence 5899999999999999999999999999999975
No 152
>PRK08275 putative oxidoreductase; Provisional
Probab=98.73 E-value=1.6e-07 Score=97.45 Aligned_cols=158 Identities=16% Similarity=0.152 Sum_probs=84.0
Q ss_pred CCCccEEEECCchHHHHHHHHHHHC--CCcEEEEcCCCCC-C-CCc-c-cccCc---------c-ccc----c-CC-CCh
Q 012488 48 NRNLRVAVIGGGPAGGAAAETLAKN--GVETFLIERKLDN-C-KPC-G-GAIPL---------C-MVG----E-FD-LPL 105 (462)
Q Consensus 48 ~~~~dVvIVGgG~aGl~~A~~L~~~--g~~v~v~E~~~~~-~-~~~-g-~~i~~---------~-~l~----~-~g-~~~ 105 (462)
.+++||+|||||.||++||+.+++. |.+|+|+||.+.. . ..+ + +++.. + .++ . -+ .+.
T Consensus 7 ~~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~~~g~~~~~~~g~~~~~~~~~d~~~~~~~d~~~~~~~~~d~ 86 (554)
T PRK08275 7 EVETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVKRSGAISMGMDGLNNAVIPGHATPEQYTKEITIANDGIVDQ 86 (554)
T ss_pred eEecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCchhhhhhhHhhhhccCCCCHHHHHHHHHHhcCCCccH
Confidence 3568999999999999999999987 7899999998731 1 100 0 11110 0 000 0 01 111
Q ss_pred hhHhc----c--------cceEEEEc-CCCceEeccCcccCCCeE-EeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEe
Q 012488 106 DIIDR----K--------VTKMKMIS-PSNVAVDIGQTLKPHEYI-GMVRREVLDAYLRERAEKNGASVINGL-FMKMDL 170 (462)
Q Consensus 106 ~~~~~----~--------~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~ 170 (462)
+++.. . -.++.+.. ..+. +..........+. ..-....+.+.|.+.+++.|+++++++ +.++..
T Consensus 87 ~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~-~~~~~~~~~~~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~ 165 (554)
T PRK08275 87 KAVYAYAEHSFETIQQLDRWGVKFEKDETGD-YAVKKVHHMGSYVLPMPEGHDIKKVLYRQLKRARVLITNRIMATRLLT 165 (554)
T ss_pred HHHHHHHHhhHHHHHHHHHCCCeeEeCCCCC-EeeecccccCcccccCCChHHHHHHHHHHHHHCCCEEEcceEEEEEEE
Confidence 11110 0 01112211 1111 1000000000000 001234577889998999999999998 888873
Q ss_pred cCCCCCCE-EEEEeccCCccCCCCceeEEEecEEEecCCCChHh
Q 012488 171 PRNFEQPY-VLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSRV 213 (462)
Q Consensus 171 ~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S~v 213 (462)
++++.+ .+...+. .++....+.++.||.|+|..+.+
T Consensus 166 --~~~g~v~Gv~~~~~-----~~g~~~~i~Ak~VIlATGG~~~~ 202 (554)
T PRK08275 166 --DADGRVAGALGFDC-----RTGEFLVIRAKAVILCCGAAGRL 202 (554)
T ss_pred --cCCCeEEEEEEEec-----CCCcEEEEECCEEEECCCCcccc
Confidence 212322 2322221 12444678999999999998754
No 153
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.73 E-value=1.2e-07 Score=98.82 Aligned_cols=35 Identities=23% Similarity=0.333 Sum_probs=32.1
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 48 NRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 48 ~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
..++||+|||||+|||++|+.+++. .+|+|+||..
T Consensus 3 ~~~~DVlVIG~G~AGl~AAl~aa~~-~~VilleK~~ 37 (583)
T PRK08205 3 QHRYDVVIVGAGGAGMRAAIEAGPR-ARTAVLTKLY 37 (583)
T ss_pred ceeccEEEECccHHHHHHHHHHHhC-CCEEEEeCCC
Confidence 3578999999999999999999986 9999999986
No 154
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.72 E-value=1.1e-07 Score=98.64 Aligned_cols=155 Identities=21% Similarity=0.145 Sum_probs=82.8
Q ss_pred CCccEEEECCchHHHHHHHHHHHC--CCcEEEEcCCCCCCC---CcccccC--------cc-----cccc-CCC-ChhhH
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKN--GVETFLIERKLDNCK---PCGGAIP--------LC-----MVGE-FDL-PLDII 108 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~--g~~v~v~E~~~~~~~---~~g~~i~--------~~-----~l~~-~g~-~~~~~ 108 (462)
.++||+|||||+|||++|+.+++. |.+|+|+||...... ..++++. ++ .++. -++ ..+++
T Consensus 2 ~~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s~~a~Gg~~~~~~~~ds~e~~~~dt~~~g~~~~d~~lv 81 (580)
T TIGR01176 2 AQHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDDSLDEHFHDTVSGGDWLCEQDVV 81 (580)
T ss_pred cceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCchhcCCchhhhcCCCCCHHHHHHHHHHhcCCcCcHHHH
Confidence 357999999999999999999987 689999999873211 1222221 00 0100 011 11111
Q ss_pred ----hccc--------ceEEEEc-CCCceE--eccCcccCCCeEEee---ehHHHHHHHHHHHHHC-CCEEEcce-eEEE
Q 012488 109 ----DRKV--------TKMKMIS-PSNVAV--DIGQTLKPHEYIGMV---RREVLDAYLRERAEKN-GASVINGL-FMKM 168 (462)
Q Consensus 109 ----~~~~--------~~~~~~~-~~~~~~--~~~~~~~~~~~~~~v---~r~~l~~~L~~~~~~~-gv~i~~~~-v~~~ 168 (462)
+... .++.|.. .++... ..+.. ........ .-..+...|.+.+.+. +++++.++ +.++
T Consensus 82 ~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~--~~~R~~~~~~~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~L 159 (580)
T TIGR01176 82 EYFVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGGM--KKERTWFAADKTGFHMLHTLFQTSLTYPQIMRYDEWFVTDL 159 (580)
T ss_pred HHHHHHhHHHHHHHHHcCCccEecCCCceeeeccCCc--cCCeeeecCCCCHHHHHHHHHHHHHhcCCCEEEeCeEEEEE
Confidence 1110 0111211 112110 00100 00001011 2245777888877764 79999887 8888
Q ss_pred EecCCCCCCEE-EEEeccCCccCCCCceeEEEecEEEecCCCChHh
Q 012488 169 DLPRNFEQPYV-LYYTEYDGTKGGVGEKRTLEVDAVIGADGANSRV 213 (462)
Q Consensus 169 ~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S~v 213 (462)
.. + ++.+. +...+. .++....+.|+.||.|||..+.+
T Consensus 160 i~--~-~g~v~Gv~~~~~-----~~g~~~~i~AkaVILATGG~~~~ 197 (580)
T TIGR01176 160 LV--D-DGRVCGLVAIEM-----AEGRLVTILADAVVLATGGAGRV 197 (580)
T ss_pred Ee--e-CCEEEEEEEEEc-----CCCcEEEEecCEEEEcCCCCccc
Confidence 73 2 23222 222211 12445689999999999999865
No 155
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.70 E-value=2.3e-08 Score=101.71 Aligned_cols=33 Identities=33% Similarity=0.402 Sum_probs=31.6
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
|||+||||||+|+++|+.|+++|.+|+|+|+++
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~ 33 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP 33 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 699999999999999999999999999999875
No 156
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.69 E-value=3.8e-08 Score=100.21 Aligned_cols=33 Identities=39% Similarity=0.555 Sum_probs=31.7
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEcC
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKNGVETFLIER 81 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~ 81 (462)
.+|||+||||||||+++|+.+++.|.+|+|+|+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~ 35 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEA 35 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 368999999999999999999999999999998
No 157
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.68 E-value=2.3e-05 Score=79.75 Aligned_cols=32 Identities=34% Similarity=0.463 Sum_probs=29.7
Q ss_pred cEEEECCchHHHHHHHHHHHC------CCcEEEEcCCC
Q 012488 52 RVAVIGGGPAGGAAAETLAKN------GVETFLIERKL 83 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~------g~~v~v~E~~~ 83 (462)
+|+|||||++||++|+.|++. |++|+|+|+++
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~ 40 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEE 40 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCC
Confidence 699999999999999999986 48999999987
No 158
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.68 E-value=3.7e-08 Score=100.20 Aligned_cols=33 Identities=42% Similarity=0.651 Sum_probs=31.4
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERK 82 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~ 82 (462)
+|||+||||||||+++|..|+++|.+|+|+|+.
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~G~~v~lie~~ 33 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQLGLKVALVEKE 33 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhCCCeEEEEecC
Confidence 389999999999999999999999999999994
No 159
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.68 E-value=2e-07 Score=96.20 Aligned_cols=35 Identities=26% Similarity=0.349 Sum_probs=32.3
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 48 NRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 48 ~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
..++||+|||+|+|||++|+.+++. .+|+|+||..
T Consensus 6 ~~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~ 40 (536)
T PRK09077 6 EHQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGP 40 (536)
T ss_pred cccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccC
Confidence 4568999999999999999999987 8999999987
No 160
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.68 E-value=2.1e-07 Score=96.01 Aligned_cols=36 Identities=31% Similarity=0.345 Sum_probs=32.6
Q ss_pred CCCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 47 TNRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 47 ~~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
.+.++||+|||+|.||+++|+.++ .|.+|+|+||.+
T Consensus 6 ~~~e~DVlVVG~G~AGl~AAi~A~-~G~~V~lieK~~ 41 (553)
T PRK07395 6 LPSQFDVLVVGSGAAGLYAALCLP-SHLRVGLITKDT 41 (553)
T ss_pred ccccCCEEEECccHHHHHHHHHhh-cCCCEEEEEccC
Confidence 456789999999999999999996 599999999987
No 161
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=98.68 E-value=4.2e-08 Score=99.49 Aligned_cols=142 Identities=23% Similarity=0.265 Sum_probs=73.2
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEcCCC-CCCCCcccccCccccccC-CCChhhHhcccceEEEEcCCCceEeccC
Q 012488 52 RVAVIGGGPAGGAAAETLAKNGVETFLIERKL-DNCKPCGGAIPLCMVGEF-DLPLDIIDRKVTKMKMISPSNVAVDIGQ 129 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~-~~~~~~g~~i~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (462)
+|+||||||+|+++|..+++.|.+|+|+||++ ...-...++++.+.|.+. ...+.......-++.... ....+++..
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~-~~~~~~~~~ 80 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPN-GSISIDWKQ 80 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccC-CCCccCHHH
Confidence 79999999999999999999999999999976 111112234554333111 110111000000111000 000111110
Q ss_pred cccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcceeEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCC
Q 012488 130 TLKPHEYIGMVRREVLDAYLRERAEKNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGA 209 (462)
Q Consensus 130 ~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~ 209 (462)
....... ++ ..+.+.....++..|++++.+++..+. ...+.|+..++ ..++++|.||.|+|.
T Consensus 81 ~~~~~~~--~~--~~~~~~~~~~~~~~~v~~~~g~a~~~~-----~~~v~v~~~~~---------~~~~~~d~lviATGs 142 (458)
T PRK06912 81 MQARKSQ--IV--TQLVQGIQYLMKKNKIKVIQGKASFET-----DHRVRVEYGDK---------EEVVDAEQFIIAAGS 142 (458)
T ss_pred HHHHHHH--HH--HHHHHHHHHHHhhCCcEEEEEEEEEcc-----CCEEEEeeCCC---------cEEEECCEEEEeCCC
Confidence 0000000 00 011222333455668999988754443 23355554332 157999999999998
Q ss_pred ChH
Q 012488 210 NSR 212 (462)
Q Consensus 210 ~S~ 212 (462)
...
T Consensus 143 ~p~ 145 (458)
T PRK06912 143 EPT 145 (458)
T ss_pred CCC
Confidence 753
No 162
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.67 E-value=2.3e-07 Score=96.57 Aligned_cols=35 Identities=31% Similarity=0.503 Sum_probs=33.2
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
.++||+|||+|.|||++|+.+++.|.+|+|+||..
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~~ 40 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKVF 40 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEEEEccC
Confidence 46899999999999999999999999999999986
No 163
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.67 E-value=4.6e-08 Score=101.72 Aligned_cols=34 Identities=24% Similarity=0.439 Sum_probs=31.5
Q ss_pred CccEEEECCchHHHHHHHHHHHC--CCcEEEEcCCC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKN--GVETFLIERKL 83 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~--g~~v~v~E~~~ 83 (462)
++||+|||||+|||++|+.+++. |.+|+|+||..
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~ 38 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTH 38 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccC
Confidence 57999999999999999999987 48999999986
No 164
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.66 E-value=1.1e-07 Score=92.74 Aligned_cols=110 Identities=25% Similarity=0.277 Sum_probs=65.4
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCC-----------Cccccc-CccccccCCCChhhHhcccceEEEE
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCK-----------PCGGAI-PLCMVGEFDLPLDIIDRKVTKMKMI 118 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~-----------~~g~~i-~~~~l~~~g~~~~~~~~~~~~~~~~ 118 (462)
.||+|||||++|+.+|+.|+++|++|+|+|+++.... .|.-.+ +...+...|++..-+.. +....+.
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s~a~~~~~~~ervca~Slgs~~ll~a~Gll~~em~~-lgsl~~~ 81 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKTPAHHTDGFAELVCSNSFRSDSLTNAVGLLKEEMRR-LGSLIME 81 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCcccccCccccccccchhhhhhhHHhcCCchHHHHHH-hcchhee
Confidence 5999999999999999999999999999998763211 111111 11234455655422111 1111111
Q ss_pred cCCCceEeccCcccCCCeEEeeehHHHHHHHHHHHHHC-CCEEEcceeEEE
Q 012488 119 SPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRERAEKN-GASVINGLFMKM 168 (462)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~-gv~i~~~~v~~~ 168 (462)
..+.. . ..... ...++|..|.+.|.+.+++. +++++.+.|.++
T Consensus 82 aad~~--~----vPA~g-aLvvdR~~~~~~L~~~L~~~pnI~l~~~eV~~l 125 (436)
T PRK05335 82 AADAH--R----VPAGG-ALAVDREGFSEYVTEALENHPLITVIREEVTEI 125 (436)
T ss_pred ccccc--C----CCCcc-ceecCHHHHHHHHHHHHHcCCCcEEEccchhcc
Confidence 11111 0 11111 23689999999999998875 588875445544
No 165
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.64 E-value=6.6e-08 Score=98.30 Aligned_cols=34 Identities=38% Similarity=0.598 Sum_probs=32.3
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
++||+||||||||+++|+.|+++|.+|+|+|++.
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~~ 37 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKKY 37 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 5899999999999999999999999999999864
No 166
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.64 E-value=5.8e-08 Score=98.57 Aligned_cols=146 Identities=23% Similarity=0.280 Sum_probs=76.8
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEcCCC-CCCCCcccccCccccc-cCCCChhhHhcccceEEEEc--CCCceEec
Q 012488 52 RVAVIGGGPAGGAAAETLAKNGVETFLIERKL-DNCKPCGGAIPLCMVG-EFDLPLDIIDRKVTKMKMIS--PSNVAVDI 127 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~-~~~~~~g~~i~~~~l~-~~g~~~~~~~~~~~~~~~~~--~~~~~~~~ 127 (462)
||+||||||+|+.+|..++++|.+|+|+|+++ ...-..-++++.+.+- ...+...+.. ...+.+.. +....+++
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~~~gG~c~~~gciPsK~l~~~a~~~~~~~~--~~~~g~~~~~~~~~~~~~ 80 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQLGADVTVIERDGLGGAAVLTDCVPSKTLIATAEVRTELRR--AAELGIRFIDDGEARVDL 80 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEEccCCCCcccccCCcchHHHHHHHHHHHHHHH--HHhCCcccccCcccccCH
Confidence 89999999999999999999999999999875 1111112234433221 1000011100 11111100 00111111
Q ss_pred cCcccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcceeEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecC
Q 012488 128 GQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGAD 207 (462)
Q Consensus 128 ~~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~Ad 207 (462)
........ -+ ...+.+.+.+.++..|++++.+++..+.. ..+...+.|...+| +..++.+|.||.|+
T Consensus 81 ~~~~~~~~---~~-~~~~~~~~~~~l~~~gV~~~~g~~~~~~~-~~~~~~v~V~~~~g--------~~~~~~~d~lViAT 147 (466)
T PRK07845 81 PAVNARVK---AL-AAAQSADIRARLEREGVRVIAGRGRLIDP-GLGPHRVKVTTADG--------GEETLDADVVLIAT 147 (466)
T ss_pred HHHHHHHH---HH-HHHHHHHHHHHHHHCCCEEEEEEEEEeec-ccCCCEEEEEeCCC--------ceEEEecCEEEEcC
Confidence 10000000 00 01123455666777899999998655331 01233455655443 22479999999999
Q ss_pred CCChH
Q 012488 208 GANSR 212 (462)
Q Consensus 208 G~~S~ 212 (462)
|....
T Consensus 148 Gs~p~ 152 (466)
T PRK07845 148 GASPR 152 (466)
T ss_pred CCCCC
Confidence 98764
No 167
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.64 E-value=2.1e-07 Score=96.26 Aligned_cols=34 Identities=29% Similarity=0.433 Sum_probs=31.9
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
.++||+|||+|.|||++|+.+ +.|.+|+|+||.+
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~G~~VilleK~~ 39 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ERGKNVVIVSKGL 39 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hcCCCEEEEEccC
Confidence 468999999999999999999 8999999999975
No 168
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.64 E-value=5.8e-07 Score=93.15 Aligned_cols=38 Identities=37% Similarity=0.536 Sum_probs=35.4
Q ss_pred CCCCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 46 LTNRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 46 ~~~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
|...++||+|||+|++|+++|+.+++.|.+|+||||.+
T Consensus 3 ~~~~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~ 40 (557)
T PRK07843 3 MTVQEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAP 40 (557)
T ss_pred CCCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 55668999999999999999999999999999999986
No 169
>PRK13748 putative mercuric reductase; Provisional
Probab=98.63 E-value=1.3e-07 Score=98.65 Aligned_cols=35 Identities=49% Similarity=0.545 Sum_probs=33.1
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
.++||+||||||+|+++|+.|++.|.+|+|+|++.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~~ 131 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERGT 131 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCc
Confidence 46999999999999999999999999999999874
No 170
>PLN02676 polyamine oxidase
Probab=98.62 E-value=1.3e-05 Score=81.55 Aligned_cols=37 Identities=27% Similarity=0.508 Sum_probs=33.5
Q ss_pred CCCCccEEEECCchHHHHHHHHHHHCCC-cEEEEcCCC
Q 012488 47 TNRNLRVAVIGGGPAGGAAAETLAKNGV-ETFLIERKL 83 (462)
Q Consensus 47 ~~~~~dVvIVGgG~aGl~~A~~L~~~g~-~v~v~E~~~ 83 (462)
.+..+||+|||||++||++|+.|+++|+ +|+|+|++.
T Consensus 23 ~~~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~ 60 (487)
T PLN02676 23 AKPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATD 60 (487)
T ss_pred ccCCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCC
Confidence 3446799999999999999999999998 699999987
No 171
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.61 E-value=6.3e-08 Score=96.31 Aligned_cols=151 Identities=22% Similarity=0.234 Sum_probs=81.2
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC--CCCCCcccccCccccccC-CCChhhHhcccceEEEEcCCCce
Q 012488 48 NRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL--DNCKPCGGAIPLCMVGEF-DLPLDIIDRKVTKMKMISPSNVA 124 (462)
Q Consensus 48 ~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~--~~~~~~g~~i~~~~l~~~-g~~~~~~~~~~~~~~~~~~~~~~ 124 (462)
.++||++||||||+|..+|+.+++.|.+|.++|+.. ...-..-+|++.+.|-.- .+...+..... .+.+. .....
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~-~~Gi~-~~~~~ 79 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAK-EYGIS-AEVPK 79 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhccc-cccee-cCCCC
Confidence 357999999999999999999999999999999994 211112235554433211 01111110000 01111 01112
Q ss_pred EeccCcccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcceeEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEE
Q 012488 125 VDIGQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVI 204 (462)
Q Consensus 125 ~~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI 204 (462)
+++......... + -..+...+....+..|++++.|+..-+ +...+.|.-. +..+++++.+|
T Consensus 80 id~~~~~~~k~~--v--~~~~~~~~~~l~~~~~V~vi~G~a~f~-----~~~~v~V~~~----------~~~~~~a~~ii 140 (454)
T COG1249 80 IDFEKLLARKDK--V--VRLLTGGVEGLLKKNGVDVIRGEARFV-----DPHTVEVTGE----------DKETITADNII 140 (454)
T ss_pred cCHHHHHHHHHH--H--HHHHhhhHHHHHhhCCCEEEEEEEEEC-----CCCEEEEcCC----------CceEEEeCEEE
Confidence 222211110000 0 012333444555667999999873321 1223444322 22799999999
Q ss_pred ecCCCChHhhhhhcC
Q 012488 205 GADGANSRVAKSINA 219 (462)
Q Consensus 205 ~AdG~~S~vr~~l~~ 219 (462)
.|+|.+...-...+.
T Consensus 141 IATGS~p~~~~~~~~ 155 (454)
T COG1249 141 IATGSRPRIPPGPGI 155 (454)
T ss_pred EcCCCCCcCCCCCCC
Confidence 999988765544443
No 172
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.59 E-value=3.5e-07 Score=93.71 Aligned_cols=33 Identities=27% Similarity=0.397 Sum_probs=31.0
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
++||+|||+|.|||++|+.+++ |.+|+|+||.+
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~~ 35 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKKT 35 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEEEeccC
Confidence 5799999999999999999976 99999999987
No 173
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.59 E-value=1.4e-07 Score=99.23 Aligned_cols=39 Identities=26% Similarity=0.281 Sum_probs=35.9
Q ss_pred CCCCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCC
Q 012488 46 LTNRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLD 84 (462)
Q Consensus 46 ~~~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 84 (462)
|...++||+|||||.|||++|+.+++.|.+|+|+||.+.
T Consensus 1 ~~~~~~DVlVIG~G~AGl~AAi~Aae~G~~VivleK~~~ 39 (657)
T PRK08626 1 MKIIYTDALVIGAGLAGLRVAIAAAQRGLDTIVLSLVPA 39 (657)
T ss_pred CCceeccEEEECccHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 556789999999999999999999999999999999873
No 174
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.58 E-value=1.1e-06 Score=91.63 Aligned_cols=37 Identities=32% Similarity=0.444 Sum_probs=34.7
Q ss_pred CCCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 47 TNRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 47 ~~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
...++||+|||+|++|+++|+.++++|.+|+|+||..
T Consensus 6 ~~~~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~ 42 (574)
T PRK12842 6 NELTCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEP 42 (574)
T ss_pred cCCCCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 4567899999999999999999999999999999987
No 175
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.57 E-value=1.7e-06 Score=90.11 Aligned_cols=37 Identities=35% Similarity=0.476 Sum_probs=34.3
Q ss_pred CCCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 47 TNRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 47 ~~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
...++||+|||+|++|+++|+.++++|.+|+||||.+
T Consensus 9 ~~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~~ 45 (581)
T PRK06134 9 PDLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKDP 45 (581)
T ss_pred CCCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 3457899999999999999999999999999999976
No 176
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=98.57 E-value=8.6e-08 Score=97.54 Aligned_cols=33 Identities=36% Similarity=0.565 Sum_probs=31.5
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERK 82 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~ 82 (462)
+|||+||||||+|+.+|+.+++.|.+|+|+|+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 589999999999999999999999999999985
No 177
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.57 E-value=8.2e-08 Score=98.12 Aligned_cols=33 Identities=36% Similarity=0.495 Sum_probs=31.5
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERK 82 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~ 82 (462)
.|||+||||||||+.+|+.|+++|.+|+|+|+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~ 37 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYV 37 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEEEecc
Confidence 589999999999999999999999999999974
No 178
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.57 E-value=5.9e-07 Score=88.34 Aligned_cols=108 Identities=23% Similarity=0.308 Sum_probs=62.3
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCC-----------Cccccc-CccccccCCCChhhHhcccceEEEEc
Q 012488 52 RVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCK-----------PCGGAI-PLCMVGEFDLPLDIIDRKVTKMKMIS 119 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~-----------~~g~~i-~~~~l~~~g~~~~~~~~~~~~~~~~~ 119 (462)
||+|||||++|+.+|+.|+++|++|+|||+++.... .|...+ +...++..|++..-+.. .....+..
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~p~~~~~~~~elvcs~Slgg~~l~~a~Gil~~ei~~-lg~l~~~~ 80 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLTPAHHTEDLAELVCSNSLGAKALDRAAGLLKTEMRQ-LSSLIITA 80 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccCchhhhhhhhhhcccccccchhHHhccCcHHHHHhh-cCeeeeeh
Confidence 799999999999999999999999999998763211 111111 11223344443322111 11122221
Q ss_pred CCCceEeccCcccCCCeEEeeehHHHHHHHHHHHHHC-CCEEEcceeEE
Q 012488 120 PSNVAVDIGQTLKPHEYIGMVRREVLDAYLRERAEKN-GASVINGLFMK 167 (462)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~-gv~i~~~~v~~ 167 (462)
.+...+ .. .....++|..+.+.+.+.++.. +++++.+.|.+
T Consensus 81 ad~~~I------pa-gg~~~vDR~lF~~~L~~qLe~~pnItviq~eV~d 122 (433)
T TIGR00137 81 ADRHAV------PA-GGALAVDRGIFSRSLTEQVASHPNVTLIREEVTE 122 (433)
T ss_pred hhhhCC------CC-CceEEehHHHHHHHHHHHHHhCCCcEEEeeeeEE
Confidence 111111 11 1133679999999999988765 35655444443
No 179
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.57 E-value=1.7e-05 Score=76.83 Aligned_cols=36 Identities=31% Similarity=0.437 Sum_probs=33.6
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 48 NRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 48 ~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
....||||||+|.+||++|..|.|.|++|+|+|-++
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~ 40 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILEARD 40 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccC
Confidence 446799999999999999999999999999999887
No 180
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.55 E-value=6.1e-07 Score=76.78 Aligned_cols=135 Identities=23% Similarity=0.333 Sum_probs=75.9
Q ss_pred EEECCchHHHHHHHHHHHC-----CCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCC--ceEe
Q 012488 54 AVIGGGPAGGAAAETLAKN-----GVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSN--VAVD 126 (462)
Q Consensus 54 vIVGgG~aGl~~A~~L~~~-----g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~--~~~~ 126 (462)
+||||||+|++++..|.++ ..+++|||+.+. .+|....... .+..+.......+.+..... ...+
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~---G~G~~~~~~~-----~~~~llN~~a~~~s~~~~~~~~~f~~ 72 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF---GAGGAYRPDQ-----PPSHLLNTPADQMSLFPDDPGDDFVD 72 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc---cccccCCCCC-----ChHHhhcccccccccccccCCCCHHH
Confidence 5999999999999999887 579999999542 2232222110 01111111222222221111 0001
Q ss_pred ccCcc-----cCCCeEEeeehHHHHHHHHHHHHH------CCCEEE--cceeEEEEecCCCCCCEEEEEeccCCccCCCC
Q 012488 127 IGQTL-----KPHEYIGMVRREVLDAYLRERAEK------NGASVI--NGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVG 193 (462)
Q Consensus 127 ~~~~~-----~~~~~~~~v~r~~l~~~L~~~~~~------~gv~i~--~~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 193 (462)
|-... ........+.|..+-++|.+..++ .|++|. ...|+++.. .++...|.+.+|
T Consensus 73 Wl~~~~~~~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~---~~~~~~v~~~~g-------- 141 (156)
T PF13454_consen 73 WLRANGADEAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRR---DDDGYRVVTADG-------- 141 (156)
T ss_pred HHHhcCcccccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEE---cCCcEEEEECCC--------
Confidence 10000 011112257788777777766544 254544 445888873 334577878777
Q ss_pred ceeEEEecEEEecCCC
Q 012488 194 EKRTLEVDAVIGADGA 209 (462)
Q Consensus 194 ~~~~~~adlvI~AdG~ 209 (462)
..+.+|.||.|+|.
T Consensus 142 --~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 142 --QSIRADAVVLATGH 155 (156)
T ss_pred --CEEEeCEEEECCCC
Confidence 78999999999994
No 181
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.55 E-value=5.7e-08 Score=87.00 Aligned_cols=32 Identities=47% Similarity=0.774 Sum_probs=30.5
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 52 RVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
||+||||||||+.+|..|++.|++|+|+|+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 79999999999999999999999999998765
No 182
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.54 E-value=1.1e-07 Score=96.72 Aligned_cols=35 Identities=46% Similarity=0.557 Sum_probs=32.4
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
++|||+||||||+|+++|..|++.|.+|+|+|++.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~ 36 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEKGP 36 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc
Confidence 35899999999999999999999999999999843
No 183
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=98.53 E-value=1.1e-06 Score=85.85 Aligned_cols=70 Identities=16% Similarity=0.235 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCC-EEEEEeccCCccCCCCceeEEEecEEEecCCCChHhhhhhcC
Q 012488 143 EVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQP-YVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSRVAKSINA 219 (462)
Q Consensus 143 ~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S~vr~~l~~ 219 (462)
..+.-.+.-.|.+.|+.+.+-. |.++. .++++. +.+.+.|- .+|++.+++|+.||-|+|..|---+++..
T Consensus 224 aRmnl~vAlTA~r~GA~v~Nh~ev~~Ll--kd~~~kv~Ga~~rD~-----iTG~e~~I~Ak~VVNATGpfsDsIr~Mdd 295 (680)
T KOG0042|consen 224 ARMNLAVALTAARNGATVLNHVEVVSLL--KDKDGKVIGARARDH-----ITGKEYEIRAKVVVNATGPFSDSIRKMDD 295 (680)
T ss_pred HHHHHHHHHHHHhcchhhhhHHHHHHHh--hCCCCceeeeEEEEe-----ecCcEEEEEEEEEEeCCCCccHHHHhhcc
Confidence 3555566667788898887654 76665 333432 34566554 68999999999999999999964444543
No 184
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.53 E-value=3.1e-07 Score=95.69 Aligned_cols=34 Identities=35% Similarity=0.364 Sum_probs=32.2
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
++||+|||+|+|||++|+.+++.|.+|+|+||.+
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~ 36 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVP 36 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccC
Confidence 3599999999999999999999999999999987
No 185
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.53 E-value=4.1e-07 Score=94.18 Aligned_cols=35 Identities=31% Similarity=0.531 Sum_probs=33.3
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
.++||+|||+|.+|+++|+.+++.|.+|+|+|+.+
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~ 39 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQD 39 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 47899999999999999999999999999999986
No 186
>PLN02487 zeta-carotene desaturase
Probab=98.52 E-value=6e-05 Score=77.73 Aligned_cols=35 Identities=37% Similarity=0.497 Sum_probs=32.8
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
+..+|+|||||++||++|+.|+++|++|+|+|+.+
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~ 108 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRP 108 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCC
Confidence 34699999999999999999999999999999987
No 187
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.52 E-value=3.4e-07 Score=95.59 Aligned_cols=34 Identities=26% Similarity=0.447 Sum_probs=32.2
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEcCC
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKNGVETFLIERK 82 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~ 82 (462)
.+|||+|||+||+|..+|+.+++.|.+|+|||++
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~ 148 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAMERGLKVIIFTGD 148 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 4689999999999999999999999999999975
No 188
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.52 E-value=2.6e-07 Score=94.78 Aligned_cols=37 Identities=30% Similarity=0.247 Sum_probs=32.2
Q ss_pred CCCCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCC
Q 012488 46 LTNRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLD 84 (462)
Q Consensus 46 ~~~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 84 (462)
|-+.++||+|||+|.|||++|+.++ |.+|+|+||.+.
T Consensus 5 ~~~~~~DVlVIG~G~AGl~AAl~Aa--~~~V~lleK~~~ 41 (513)
T PRK07512 5 LRILTGRPVIVGGGLAGLMAALKLA--PRPVVVLSPAPL 41 (513)
T ss_pred ccCCcCCEEEECchHHHHHHHHHhC--cCCEEEEECCCC
Confidence 3455789999999999999999997 569999999873
No 189
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.51 E-value=2.2e-07 Score=94.44 Aligned_cols=34 Identities=24% Similarity=0.305 Sum_probs=31.8
Q ss_pred CCccEEEECCchHHHHHHHHHHHC-CCcEEEEcCC
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKN-GVETFLIERK 82 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~-g~~v~v~E~~ 82 (462)
.+|||+||||||+|..+|+.+++. |.+|+|+|++
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 468999999999999999999996 9999999984
No 190
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.51 E-value=1.3e-07 Score=68.27 Aligned_cols=29 Identities=41% Similarity=0.495 Sum_probs=27.3
Q ss_pred EECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 55 VIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 55 IVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
|||||++||++|+.|++.|++|+|+|+++
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCc
Confidence 89999999999999999999999999987
No 191
>PRK14727 putative mercuric reductase; Provisional
Probab=98.50 E-value=6.9e-07 Score=91.11 Aligned_cols=37 Identities=38% Similarity=0.434 Sum_probs=34.2
Q ss_pred CCCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 47 TNRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 47 ~~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
..+++||+||||||+|+.+|..|+++|.+|+|+|++.
T Consensus 13 ~~~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~ 49 (479)
T PRK14727 13 SKLQLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGAD 49 (479)
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence 4567999999999999999999999999999999874
No 192
>PRK12839 hypothetical protein; Provisional
Probab=98.48 E-value=2e-06 Score=89.18 Aligned_cols=36 Identities=28% Similarity=0.470 Sum_probs=33.7
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 48 NRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 48 ~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
+.++||+|||+|++|+++|+.+++.|.+|+|+||..
T Consensus 6 ~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~ 41 (572)
T PRK12839 6 THTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKAS 41 (572)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 347899999999999999999999999999999986
No 193
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.47 E-value=1.3e-06 Score=90.43 Aligned_cols=36 Identities=25% Similarity=0.466 Sum_probs=33.3
Q ss_pred CCCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 47 TNRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 47 ~~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
...++||||||+| +|+++|+.+++.|.+|+|+||.+
T Consensus 13 ~d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek~~ 48 (564)
T PRK12845 13 RDTTVDLLVVGSG-TGMAAALAAHELGLSVLIVEKSS 48 (564)
T ss_pred CCceeCEEEECCc-HHHHHHHHHHHCCCcEEEEecCC
Confidence 3458999999999 89999999999999999999986
No 194
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.46 E-value=1e-06 Score=91.51 Aligned_cols=32 Identities=31% Similarity=0.545 Sum_probs=30.4
Q ss_pred cEEEECCchHHHHHHHHHH----HCCCcEEEEcCCC
Q 012488 52 RVAVIGGGPAGGAAAETLA----KNGVETFLIERKL 83 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~----~~g~~v~v~E~~~ 83 (462)
||+|||||.|||+||+.++ +.|.+|+|+||..
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~ 36 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKAN 36 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccC
Confidence 8999999999999999998 6799999999987
No 195
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.46 E-value=5.5e-07 Score=97.99 Aligned_cols=35 Identities=31% Similarity=0.378 Sum_probs=32.8
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
...+|+|||||||||++|..|++.|++|+|||+.+
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~ 339 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFH 339 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCC
Confidence 45699999999999999999999999999999875
No 196
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.46 E-value=9.5e-07 Score=91.58 Aligned_cols=35 Identities=34% Similarity=0.496 Sum_probs=33.6
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
+++||+|||+|.|||++|+.+++.|.+|+|+||.+
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~ 37 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN 37 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 57899999999999999999999999999999987
No 197
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.45 E-value=7.6e-07 Score=99.62 Aligned_cols=36 Identities=39% Similarity=0.556 Sum_probs=33.8
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 48 NRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 48 ~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
+.++||||||+|.||+++|+.+++.|.+|+|+||.+
T Consensus 407 t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~ 442 (1167)
T PTZ00306 407 SLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKEA 442 (1167)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccC
Confidence 456899999999999999999999999999999986
No 198
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.45 E-value=3.8e-06 Score=62.95 Aligned_cols=79 Identities=29% Similarity=0.296 Sum_probs=60.3
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEeccCcc
Q 012488 52 RVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQTL 131 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (462)
+|+|||||+.|+-+|..|++.|.+|+|+++.+.... . +
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~------------~--~---------------------------- 38 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLP------------G--F---------------------------- 38 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSST------------T--S----------------------------
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhh------------h--c----------------------------
Confidence 489999999999999999999999999999873200 0 0
Q ss_pred cCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEecc
Q 012488 132 KPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEY 185 (462)
Q Consensus 132 ~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~ 185 (462)
-..+.+.+.+..++.|+++++++ +..++ .++++ +.|+++||
T Consensus 39 ----------~~~~~~~~~~~l~~~gV~v~~~~~v~~i~--~~~~~-~~V~~~~g 80 (80)
T PF00070_consen 39 ----------DPDAAKILEEYLRKRGVEVHTNTKVKEIE--KDGDG-VEVTLEDG 80 (80)
T ss_dssp ----------SHHHHHHHHHHHHHTTEEEEESEEEEEEE--EETTS-EEEEEETS
T ss_pred ----------CHHHHHHHHHHHHHCCCEEEeCCEEEEEE--EeCCE-EEEEEecC
Confidence 01245666777788899999998 99888 33444 66888775
No 199
>KOG2852 consensus Possible oxidoreductase [General function prediction only]
Probab=98.44 E-value=1.1e-05 Score=72.92 Aligned_cols=153 Identities=14% Similarity=0.181 Sum_probs=85.2
Q ss_pred ccEEEECCchHHHHHHHHHHHCC------CcEEEEcCCCCCCCCcc--ccc-C----c---cccccC------CCChhhH
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNG------VETFLIERKLDNCKPCG--GAI-P----L---CMVGEF------DLPLDII 108 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g------~~v~v~E~~~~~~~~~g--~~i-~----~---~~l~~~------g~~~~~~ 108 (462)
.+|+|||||+.|..+|+.|++++ ++++|||+..-..-..| +++ . + .-|..+ ++.+++.
T Consensus 11 k~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGkasgfLa~wc~~s~~~~La~lsfkLh~~Lsdeyd 90 (380)
T KOG2852|consen 11 KKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKASGFLAKWCQPSIIQPLATLSFKLHEELSDEYD 90 (380)
T ss_pred eEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeecccccccccccchhhHhhhCCcccchhhHHHHHHHHHHHHhhc
Confidence 58999999999999999999987 89999999872211111 111 1 1 111111 1222221
Q ss_pred hcc---cceEEEEc-------CCCce----Eecc--------CcccCCCeEEeeehHHHHHHHHHHHHHCC-CEEEccee
Q 012488 109 DRK---VTKMKMIS-------PSNVA----VDIG--------QTLKPHEYIGMVRREVLDAYLRERAEKNG-ASVINGLF 165 (462)
Q Consensus 109 ~~~---~~~~~~~~-------~~~~~----~~~~--------~~~~~~~~~~~v~r~~l~~~L~~~~~~~g-v~i~~~~v 165 (462)
... ++...-++ .+... .+|- ..+....-...++...|.+.+.+.+++.| |++..|+|
T Consensus 91 GvnnwgYRaltTws~ka~~en~~p~k~pegldWi~~e~v~~~ssiG~t~ttaqvhP~lFc~~i~sea~k~~~V~lv~Gkv 170 (380)
T KOG2852|consen 91 GVNNWGYRALTTWSCKADWENTNPAKVPEGLDWIQRERVQKCSSIGSTNTTAQVHPYLFCHFILSEAEKRGGVKLVFGKV 170 (380)
T ss_pred CcccccceeeeEEEEEeecccCCcccCCcchhhhhhHHhhhheeccCCCccceeCHHHHHHHHHHHHHhhcCeEEEEeee
Confidence 111 11111000 00000 0110 00111122236788899999999988876 99999998
Q ss_pred EEEEecCCCCCCE-EEEEeccCCccCCCCceeEEEecEEEecCCCChH
Q 012488 166 MKMDLPRNFEQPY-VLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSR 212 (462)
Q Consensus 166 ~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S~ 212 (462)
..+. ++..++ .+.... ..+.......+.+|.+.|.++.
T Consensus 171 ~ev~---dEk~r~n~v~~ae------~~~ti~~~d~~~ivvsaGPWTs 209 (380)
T KOG2852|consen 171 KEVS---DEKHRINSVPKAE------AEDTIIKADVHKIVVSAGPWTS 209 (380)
T ss_pred EEee---cccccccccchhh------hcCceEEeeeeEEEEecCCCch
Confidence 8886 222221 111111 1122367788999999999886
No 200
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=2.2e-06 Score=74.55 Aligned_cols=117 Identities=29% Similarity=0.425 Sum_probs=81.3
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEeccC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQ 129 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (462)
.-+|+|||.|||+-++|++++|+.++.++||---.....-|+.+.. . .+..
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtT------------------------T----T~ve- 58 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTT------------------------T----TDVE- 58 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeee------------------------e----eccc-
Confidence 3489999999999999999999999999999654221222222110 0 0000
Q ss_pred cccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcceeEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCC
Q 012488 130 TLKPHEYIGMVRREVLDAYLRERAEKNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGA 209 (462)
Q Consensus 130 ~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~ 209 (462)
+...|---+.-.+|-+.+++++.+.|.+|+..+|.++.. ....+++..+. ..+.||-||.|+|+
T Consensus 59 --NfPGFPdgi~G~~l~d~mrkqs~r~Gt~i~tEtVskv~~---sskpF~l~td~-----------~~v~~~avI~atGA 122 (322)
T KOG0404|consen 59 --NFPGFPDGITGPELMDKMRKQSERFGTEIITETVSKVDL---SSKPFKLWTDA-----------RPVTADAVILATGA 122 (322)
T ss_pred --cCCCCCcccccHHHHHHHHHHHHhhcceeeeeehhhccc---cCCCeEEEecC-----------CceeeeeEEEeccc
Confidence 011111124556788999999999999999999888874 34457776533 68999999999996
Q ss_pred Ch
Q 012488 210 NS 211 (462)
Q Consensus 210 ~S 211 (462)
..
T Consensus 123 sA 124 (322)
T KOG0404|consen 123 SA 124 (322)
T ss_pred ce
Confidence 44
No 201
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.43 E-value=2e-06 Score=89.45 Aligned_cols=35 Identities=37% Similarity=0.603 Sum_probs=33.4
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
.++||||||+|++|+++|+.++++|.+|+|+||.+
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~ 44 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSA 44 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 46899999999999999999999999999999987
No 202
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.43 E-value=7.2e-07 Score=93.08 Aligned_cols=31 Identities=42% Similarity=0.470 Sum_probs=29.9
Q ss_pred EEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 53 VAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 53 VvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
|+|||+|+|||++|+.+++.|.+|+|+||.+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~ 31 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVD 31 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecC
Confidence 7999999999999999999999999999987
No 203
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.40 E-value=2e-06 Score=88.42 Aligned_cols=34 Identities=35% Similarity=0.466 Sum_probs=32.4
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
.++||||||+| +|+++|+.+++.|.+|+|+||.+
T Consensus 6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~ 39 (513)
T PRK12837 6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATD 39 (513)
T ss_pred CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCC
Confidence 47899999999 99999999999999999999987
No 204
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.39 E-value=1.6e-06 Score=90.24 Aligned_cols=36 Identities=39% Similarity=0.535 Sum_probs=33.6
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 48 NRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 48 ~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
..++||+|||+|++|+++|+.++++|.+|+|+||..
T Consensus 14 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek~~ 49 (578)
T PRK12843 14 DAEFDVIVIGAGAAGMSAALFAAIAGLKVLLVERTE 49 (578)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 447899999999999999999999999999999976
No 205
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.39 E-value=1.9e-06 Score=86.85 Aligned_cols=61 Identities=16% Similarity=0.132 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHCCCEEEcce-eEEEEecCCC-CCCEE-EEEeccCCccCCCCceeEEEecEEEecCCCChHhh
Q 012488 143 EVLDAYLRERAEKNGASVINGL-FMKMDLPRNF-EQPYV-LYYTEYDGTKGGVGEKRTLEVDAVIGADGANSRVA 214 (462)
Q Consensus 143 ~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~-~~~~~-v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S~vr 214 (462)
..+.+.|.+.+++.|++|+.++ |+++.. ++ ++.++ |...++ ...+.++.||.|+|..+.-+
T Consensus 123 ~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~--~~~~g~v~gv~~~~~---------~~~i~ak~VIlAtGG~~~n~ 186 (432)
T TIGR02485 123 KALTNALYSSAERLGVEIRYGIAVDRIPP--EAFDGAHDGPLTTVG---------THRITTQALVLAAGGLGANR 186 (432)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEe--cCCCCeEEEEEEcCC---------cEEEEcCEEEEcCCCcccCH
Confidence 4577888999999999999988 888873 22 23222 222222 15889999999999877544
No 206
>PRK09897 hypothetical protein; Provisional
Probab=98.38 E-value=2.4e-06 Score=87.17 Aligned_cols=33 Identities=21% Similarity=0.376 Sum_probs=29.5
Q ss_pred ccEEEECCchHHHHHHHHHHHCC--CcEEEEcCCC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNG--VETFLIERKL 83 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g--~~v~v~E~~~ 83 (462)
.+|+||||||+|+++|..|.+.+ ++|+|||++.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~ 36 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQAD 36 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCC
Confidence 38999999999999999998764 6899999976
No 207
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.36 E-value=3.5e-06 Score=92.15 Aligned_cols=37 Identities=41% Similarity=0.548 Sum_probs=34.2
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCC
Q 012488 48 NRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLD 84 (462)
Q Consensus 48 ~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 84 (462)
..++||+|||||.|||++|+.+++.|.+|+|+||...
T Consensus 11 ~~~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 11 RLDCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred eeecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 3568999999999999999999999999999999873
No 208
>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]
Probab=98.36 E-value=9.5e-06 Score=74.31 Aligned_cols=163 Identities=18% Similarity=0.285 Sum_probs=94.0
Q ss_pred CCCCccEEEECCchHHHHHHHHHHHC--CCcEEEEcCCCCCCCCccc--------cc--Ccccc----------------
Q 012488 47 TNRNLRVAVIGGGPAGGAAAETLAKN--GVETFLIERKLDNCKPCGG--------AI--PLCMV---------------- 98 (462)
Q Consensus 47 ~~~~~dVvIVGgG~aGl~~A~~L~~~--g~~v~v~E~~~~~~~~~g~--------~i--~~~~l---------------- 98 (462)
+..++|+||||||++||+.|.+|.-+ +.+|.|+|+.........+ +| .+..|
T Consensus 45 s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghNSgViHaGIYY~P~SLKAklCV~G~~LlY~yc 124 (453)
T KOG2665|consen 45 SKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHNSGVIHAGIYYKPGSLKAKLCVEGRELLYEYC 124 (453)
T ss_pred ccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccccceeeeeeeeCCcccchhhhhccHHHHHHHh
Confidence 35679999999999999999999866 8999999998843322111 11 11111
Q ss_pred ccCCCC-------------------hhh----HhcccceEEEEcCCCc-eEec---c--CcccCCCeEEeeehHHHHHHH
Q 012488 99 GEFDLP-------------------LDI----IDRKVTKMKMISPSNV-AVDI---G--QTLKPHEYIGMVRREVLDAYL 149 (462)
Q Consensus 99 ~~~g~~-------------------~~~----~~~~~~~~~~~~~~~~-~~~~---~--~~~~~~~~~~~v~r~~l~~~L 149 (462)
++.+++ +.+ .++.+.+++++..... +.+. + ....+ ..++++...+...+
T Consensus 125 ~e~~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~ei~~~EP~crgvkAl~sP--htGIvD~~~v~ls~ 202 (453)
T KOG2665|consen 125 DEKKIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPYCRGVKALLSP--HTGIVDWGSVTLSF 202 (453)
T ss_pred hhcCCChhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeeccchhhhcChhhhhhhhhcCC--CcceeehHHHHHHH
Confidence 111111 111 1223444444432211 0000 0 01112 23367777777778
Q ss_pred HHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCCChH-hhhhhcC
Q 012488 150 RERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSR-VAKSINA 219 (462)
Q Consensus 150 ~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S~-vr~~l~~ 219 (462)
.+..+..|-+++.+. +..+....+..-..-+.+.+ +...+++++.+|.|.|..|. +...-+.
T Consensus 203 ~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~n--------gk~ee~r~~~~vtc~gl~sdr~aa~sgc 266 (453)
T KOG2665|consen 203 GEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLN--------GKGEEKRTKNVVTCAGLQSDRCAALSGC 266 (453)
T ss_pred HHHHHHhcccccccceeccchhccCCCCCCceEEec--------CccceeEEeEEEEeccccHhHHHHHhCC
Confidence 888888888888877 77776322211122233333 23489999999999999886 4444443
No 209
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.33 E-value=2.7e-06 Score=82.69 Aligned_cols=74 Identities=19% Similarity=0.198 Sum_probs=58.5
Q ss_pred eehHHHHHHHHHHHHHC-CCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCCChH-hhhh
Q 012488 140 VRREVLDAYLRERAEKN-GASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSR-VAKS 216 (462)
Q Consensus 140 v~r~~l~~~L~~~~~~~-gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S~-vr~~ 216 (462)
|+-..|.+.|.+.+++. |+++++++ |+++. +..++.+.|.+.+- .+++..++++++|+...|..|. +.+.
T Consensus 178 VnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~--r~~dg~W~v~~~~~-----~~~~~~~v~a~FVfvGAGG~aL~LLqk 250 (488)
T PF06039_consen 178 VNFGALTRQLVEYLQKQKGFELHLNHEVTDIK--RNGDGRWEVKVKDL-----KTGEKREVRAKFVFVGAGGGALPLLQK 250 (488)
T ss_pred ccHHHHHHHHHHHHHhCCCcEEEecCEeCeeE--ECCCCCEEEEEEec-----CCCCeEEEECCEEEECCchHhHHHHHH
Confidence 55567777788888777 89999998 99998 45666799988764 4567789999999999999995 6677
Q ss_pred hcCC
Q 012488 217 INAG 220 (462)
Q Consensus 217 l~~~ 220 (462)
.+++
T Consensus 251 sgi~ 254 (488)
T PF06039_consen 251 SGIP 254 (488)
T ss_pred cCCh
Confidence 7754
No 210
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.33 E-value=2.5e-06 Score=91.87 Aligned_cols=36 Identities=47% Similarity=0.581 Sum_probs=33.0
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 48 NRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 48 ~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
....+|+||||||||+++|..|++.|++|+|||+.+
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~ 572 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREE 572 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEeccc
Confidence 345689999999999999999999999999999876
No 211
>PRK07846 mycothione reductase; Reviewed
Probab=98.32 E-value=4.8e-07 Score=91.45 Aligned_cols=32 Identities=16% Similarity=0.272 Sum_probs=28.1
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
+|||+||||||+|..+|.. ..|.+|+|+|++.
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~~ 32 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKGT 32 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCCC
Confidence 4899999999999988865 4699999999875
No 212
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.32 E-value=3.2e-07 Score=88.73 Aligned_cols=156 Identities=16% Similarity=0.207 Sum_probs=81.4
Q ss_pred CccEEEECCchHHHHHHHHHHHCC-CcEEEEcCCCCCCCCccccc-----CccccccCCCChhhHhcccceEEEEcCCCc
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNG-VETFLIERKLDNCKPCGGAI-----PLCMVGEFDLPLDIIDRKVTKMKMISPSNV 123 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g-~~v~v~E~~~~~~~~~g~~i-----~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 123 (462)
.+|+++||.||++|++|+.|...+ .+++.+||++...-..|-.+ +...|+.|--..+ ....+.-..+....+.
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~-P~s~~sflnYL~~~~r 80 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRD-PTSPFSFLNYLHEHGR 80 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT--TTSTTSHHHHHHHTT-
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcC-CCCcccHHHHHHHcCC
Confidence 479999999999999999999876 99999999885443333333 2333333311000 0000000001111111
Q ss_pred eEeccCcccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCC-CCEEEEEeccCCccCCCCceeEEEec
Q 012488 124 AVDIGQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFE-QPYVLYYTEYDGTKGGVGEKRTLEVD 201 (462)
Q Consensus 124 ~~~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~ad 201 (462)
...+ .....+ .+.|.+|.++|.-.+++.+-.+.++. |++|......+ ..+.|.+.+. +|...++.|+
T Consensus 81 l~~f---~~~~~~--~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~------~g~~~~~~ar 149 (341)
T PF13434_consen 81 LYEF---YNRGYF--FPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDS------DGDGETYRAR 149 (341)
T ss_dssp HHHH---HHH--S--S-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEET------TS-EEEEEES
T ss_pred hhhh---hhcCCC--CCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeec------CCCeeEEEeC
Confidence 1111 001111 47899999999999888886577777 99998532221 2477777543 3566899999
Q ss_pred EEEecCCCChHhhhhh
Q 012488 202 AVIGADGANSRVAKSI 217 (462)
Q Consensus 202 lvI~AdG~~S~vr~~l 217 (462)
-||.|.|....+-+.+
T Consensus 150 ~vVla~G~~P~iP~~~ 165 (341)
T PF13434_consen 150 NVVLATGGQPRIPEWF 165 (341)
T ss_dssp EEEE----EE---GGG
T ss_pred eEEECcCCCCCCCcch
Confidence 9999999554444333
No 213
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=1.6e-06 Score=80.32 Aligned_cols=113 Identities=28% Similarity=0.307 Sum_probs=80.6
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEE-cCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEec
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKNGVETFLI-ERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDI 127 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~-E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (462)
..|||+||||||||.++|++.+|+|++.-|+ ||-. + +.|+.+++ +. +++ .
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~aerfG-------G----QvldT~~I-EN----------fIs-------v 260 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAERFG-------G----QVLDTMGI-EN----------FIS-------V 260 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhhhhhhC-------C----eeccccch-hh----------eec-------c
Confidence 3699999999999999999999999988555 4321 1 12233322 10 111 0
Q ss_pred cCcccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEec
Q 012488 128 GQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGA 206 (462)
Q Consensus 128 ~~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~A 206 (462)
. ...-.+|-..|.++.+++.+++.... .++++....+++.+.|++.+| -..+++-||.+
T Consensus 261 ~----------~teGpkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nG----------avLkaktvIls 320 (520)
T COG3634 261 P----------ETEGPKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANG----------AVLKARTVILA 320 (520)
T ss_pred c----------cccchHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCC----------ceeccceEEEe
Confidence 0 12234577888889999999988765 777775445566788999998 79999999999
Q ss_pred CCCC
Q 012488 207 DGAN 210 (462)
Q Consensus 207 dG~~ 210 (462)
+|++
T Consensus 321 tGAr 324 (520)
T COG3634 321 TGAR 324 (520)
T ss_pred cCcc
Confidence 9964
No 214
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.27 E-value=2.7e-06 Score=92.00 Aligned_cols=35 Identities=43% Similarity=0.560 Sum_probs=32.8
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
...+|+||||||||+++|+.|++.|++|+|||+.+
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~ 570 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKE 570 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence 45799999999999999999999999999999876
No 215
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=98.26 E-value=2.5e-06 Score=80.03 Aligned_cols=35 Identities=40% Similarity=0.587 Sum_probs=33.6
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
.++||+|||+||+|-.+|+..++.|++.+.+|++.
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~ 72 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRG 72 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccC
Confidence 58999999999999999999999999999999976
No 216
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.25 E-value=1.1e-06 Score=88.77 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=33.4
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC-CCCCCcccccCcccc
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL-DNCKPCGGAIPLCMV 98 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~-~~~~~~g~~i~~~~l 98 (462)
+|||+|||+||+|..+|. +..|.+|+|+|++. ...-..-+|+|.+.|
T Consensus 2 ~yD~vvIG~G~~g~~aa~--~~~g~~V~lie~~~~GGtC~n~GCiPsK~l 49 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDP--RFADKRIAIVEKGTFGGTCLNVGCIPTKMF 49 (452)
T ss_pred CcCEEEECCCHHHHHHHH--HHCCCeEEEEeCCCCCCeeeccCccchHHH
Confidence 589999999999988864 45799999999875 221222345555443
No 217
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.23 E-value=1e-06 Score=89.85 Aligned_cols=34 Identities=38% Similarity=0.506 Sum_probs=32.8
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
.+||||||||++||++|..|+|+|++|+|+||+.
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~ 36 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKND 36 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCCEEEEEEecC
Confidence 5799999999999999999999999999999887
No 218
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.22 E-value=7.8e-06 Score=82.76 Aligned_cols=32 Identities=28% Similarity=0.424 Sum_probs=29.5
Q ss_pred cEEEECCchHHHHHHHHHHHCC--CcEEEEcCCC
Q 012488 52 RVAVIGGGPAGGAAAETLAKNG--VETFLIERKL 83 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g--~~v~v~E~~~ 83 (462)
+|+|||||+||+++|..|++.+ .+|+|||+++
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~ 35 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTD 35 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCC
Confidence 7999999999999999999875 5899999986
No 219
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.22 E-value=3.8e-06 Score=82.69 Aligned_cols=143 Identities=21% Similarity=0.285 Sum_probs=87.9
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCC-----CCCCcccccCcc----ccccCC-CChhhHhcccceEEEEc
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLD-----NCKPCGGAIPLC----MVGEFD-LPLDIIDRKVTKMKMIS 119 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~-----~~~~~g~~i~~~----~l~~~g-~~~~~~~~~~~~~~~~~ 119 (462)
.|||+|||||-||+-||++.+|.|.+++++-.+.. .+.+.-+++... .++.|| +-........-.+++.+
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN 83 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLN 83 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhcc
Confidence 48999999999999999999999999999977762 122222333322 223332 22222222222222222
Q ss_pred CCCceEeccCcccCCCeEEeeehHHHHHHHHHHHHHC-CCEEEcceeEEEEecCCCCC-CEEEEEeccCCccCCCCceeE
Q 012488 120 PSNVAVDIGQTLKPHEYIGMVRREVLDAYLRERAEKN-GASVINGLFMKMDLPRNFEQ-PYVLYYTEYDGTKGGVGEKRT 197 (462)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~-gv~i~~~~v~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~ 197 (462)
.+. |.... ..-.-+++..+...+.+.++.. +.+++.+.|+++.. .++. .+.|.+.+| ..
T Consensus 84 ~sK-----GPAVr--a~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~--e~~~~v~GV~t~~G----------~~ 144 (621)
T COG0445 84 SSK-----GPAVR--APRAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIV--EEGQRVVGVVTADG----------PE 144 (621)
T ss_pred CCC-----cchhc--chhhhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhh--cCCCeEEEEEeCCC----------Ce
Confidence 111 10000 0011366777888888877665 68999998888873 2222 355667777 89
Q ss_pred EEecEEEecCCCCh
Q 012488 198 LEVDAVIGADGANS 211 (462)
Q Consensus 198 ~~adlvI~AdG~~S 211 (462)
+.|+.||.++|..=
T Consensus 145 ~~a~aVVlTTGTFL 158 (621)
T COG0445 145 FHAKAVVLTTGTFL 158 (621)
T ss_pred eecCEEEEeecccc
Confidence 99999999999653
No 220
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.19 E-value=1.6e-05 Score=79.19 Aligned_cols=107 Identities=19% Similarity=0.221 Sum_probs=66.4
Q ss_pred ccEEEECCchHHHHHHHHHHHCCC--cEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEecc
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGV--ETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIG 128 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~--~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (462)
.+|+|||||+||+.+|..|++.|. +|+|+++.+.... .+..+...+... ...
T Consensus 4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y-----------~r~~l~~~~~~~----------~~~----- 57 (396)
T PRK09754 4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPY-----------ERPPLSKSMLLE----------DSP----- 57 (396)
T ss_pred CcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCC-----------CCCCCCHHHHCC----------CCc-----
Confidence 379999999999999999999886 7999998762210 011111111110 000
Q ss_pred CcccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecC
Q 012488 129 QTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGAD 207 (462)
Q Consensus 129 ~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~Ad 207 (462)
... . ... . +...+.|++++.++ |..+.. + . ..|.+.+| .++.+|.||.|+
T Consensus 58 ---~~~-~--~~~----~----~~~~~~~i~~~~g~~V~~id~---~-~-~~v~~~~g----------~~~~yd~LViAT 108 (396)
T PRK09754 58 ---QLQ-Q--VLP----A----NWWQENNVHLHSGVTIKTLGR---D-T-RELVLTNG----------ESWHWDQLFIAT 108 (396)
T ss_pred ---ccc-c--cCC----H----HHHHHCCCEEEcCCEEEEEEC---C-C-CEEEECCC----------CEEEcCEEEEcc
Confidence 000 0 000 0 11235689999886 888872 2 2 34555665 689999999999
Q ss_pred CCChH
Q 012488 208 GANSR 212 (462)
Q Consensus 208 G~~S~ 212 (462)
|....
T Consensus 109 Gs~~~ 113 (396)
T PRK09754 109 GAAAR 113 (396)
T ss_pred CCCCC
Confidence 98763
No 221
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.19 E-value=2.4e-05 Score=75.60 Aligned_cols=86 Identities=19% Similarity=0.183 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCCChH-----hhhh
Q 012488 143 EVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSR-----VAKS 216 (462)
Q Consensus 143 ~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S~-----vr~~ 216 (462)
....+-+.+..++.|+++++.+ |.+++. .++....|...+| .++.+|.||.|-|..+. +.++
T Consensus 173 ~~vvkni~~~l~~~G~ei~f~t~VeDi~~--~~~~~~~v~~~~g----------~~i~~~~vvlA~Grsg~dw~~~l~~K 240 (486)
T COG2509 173 PKVVKNIREYLESLGGEIRFNTEVEDIEI--EDNEVLGVKLTKG----------EEIEADYVVLAPGRSGRDWFEMLHKK 240 (486)
T ss_pred HHHHHHHHHHHHhcCcEEEeeeEEEEEEe--cCCceEEEEccCC----------cEEecCEEEEccCcchHHHHHHHHHh
Confidence 4566778888999999999998 999984 2333456677776 89999999999998764 2344
Q ss_pred hcCCCCceEEEEEEEEecCCcccc
Q 012488 217 INAGDYDYAIAFQERVKIPDEKMV 240 (462)
Q Consensus 217 l~~~~~~~~~~~~~~~~~~~~~~~ 240 (462)
+|..-.........+++.|...+.
T Consensus 241 ~Gv~~~~~p~dIGVRvE~p~~vmd 264 (486)
T COG2509 241 LGVKMRAKPFDIGVRVEHPQSVMD 264 (486)
T ss_pred cCcccccCCeeEEEEEecchHhhC
Confidence 444322222333445555554443
No 222
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.17 E-value=2.9e-05 Score=85.80 Aligned_cols=35 Identities=37% Similarity=0.567 Sum_probs=32.9
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
..+||+||||||||+++|+.|++.|++|+|+|+.+
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~ 196 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVILVDEQP 196 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 35799999999999999999999999999999986
No 223
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.16 E-value=1.2e-05 Score=81.11 Aligned_cols=32 Identities=16% Similarity=0.402 Sum_probs=29.9
Q ss_pred cEEEECCchHHHHHHHHHHHC--CCcEEEEcCCC
Q 012488 52 RVAVIGGGPAGGAAAETLAKN--GVETFLIERKL 83 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~--g~~v~v~E~~~ 83 (462)
+|+|||||+||+.+|..|++. +.+|+|+|+.+
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~ 36 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDR 36 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCC
Confidence 799999999999999999886 68999999986
No 224
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.16 E-value=3e-05 Score=76.72 Aligned_cols=104 Identities=23% Similarity=0.333 Sum_probs=76.1
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEeccCc
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQT 130 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (462)
-+|+|||||+.|+-+|..|++.|.+|+++|+.+... .. . .
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l------------~~------~-------------------~--- 181 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLL------------AS------L-------------------M--- 181 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCccc------------ch------h-------------------C---
Confidence 479999999999999999999999999999865210 00 0 0
Q ss_pred ccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCC
Q 012488 131 LKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGA 209 (462)
Q Consensus 131 ~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~ 209 (462)
...+...+.+.+++.|++++.++ +.++.. +++.+.+.+.++ .++.+|+||.|+|.
T Consensus 182 -----------~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~---~~~~~~v~~~~g----------~~i~~D~vI~a~G~ 237 (377)
T PRK04965 182 -----------PPEVSSRLQHRLTEMGVHLLLKSQLQGLEK---TDSGIRATLDSG----------RSIEVDAVIAAAGL 237 (377)
T ss_pred -----------CHHHHHHHHHHHHhCCCEEEECCeEEEEEc---cCCEEEEEEcCC----------cEEECCEEEECcCC
Confidence 01234556667778899999877 888872 233466777776 78999999999998
Q ss_pred ChH--hhhhhc
Q 012488 210 NSR--VAKSIN 218 (462)
Q Consensus 210 ~S~--vr~~l~ 218 (462)
.+. +.+..+
T Consensus 238 ~p~~~l~~~~g 248 (377)
T PRK04965 238 RPNTALARRAG 248 (377)
T ss_pred CcchHHHHHCC
Confidence 653 444444
No 225
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.15 E-value=1.1e-05 Score=81.13 Aligned_cols=117 Identities=15% Similarity=0.111 Sum_probs=69.0
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEeccC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQ 129 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (462)
+.+|||||||.||+.+|..|.+.+++|+|||+++.... .+ . + ..+ . .+.
T Consensus 10 ~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~~------~~-~-----l-~~~----~--------~g~------ 58 (424)
T PTZ00318 10 KPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHMLF------TP-L-----L-PQT----T--------TGT------ 58 (424)
T ss_pred CCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcch------hh-h-----H-HHh----c--------ccC------
Confidence 45899999999999999999877899999998762100 00 0 0 000 0 000
Q ss_pred cccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcceeEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCC
Q 012488 130 TLKPHEYIGMVRREVLDAYLRERAEKNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGA 209 (462)
Q Consensus 130 ~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~ 209 (462)
.....+..-+.+.++..|++++.++|++++. ++..+.+...+.+ ....+++.++.+|.||.|+|.
T Consensus 59 ----------~~~~~~~~~~~~~~~~~~~~~i~~~V~~Id~---~~~~v~~~~~~~~--~~~~~~g~~i~yD~LViAtGs 123 (424)
T PTZ00318 59 ----------LEFRSICEPVRPALAKLPNRYLRAVVYDVDF---EEKRVKCGVVSKS--NNANVNTFSVPYDKLVVAHGA 123 (424)
T ss_pred ----------CChHHhHHHHHHHhccCCeEEEEEEEEEEEc---CCCEEEEeccccc--ccccCCceEecCCEEEECCCc
Confidence 0001122224444556688888888999873 2333444221110 001122368999999999998
Q ss_pred ChH
Q 012488 210 NSR 212 (462)
Q Consensus 210 ~S~ 212 (462)
...
T Consensus 124 ~~~ 126 (424)
T PTZ00318 124 RPN 126 (424)
T ss_pred ccC
Confidence 753
No 226
>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]
Probab=98.11 E-value=6.7e-05 Score=68.44 Aligned_cols=50 Identities=16% Similarity=0.295 Sum_probs=38.9
Q ss_pred eeehHHHHHHHHHHHHHCCCEEEcceeEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCCChH
Q 012488 139 MVRREVLDAYLRERAEKNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSR 212 (462)
Q Consensus 139 ~v~r~~l~~~L~~~~~~~gv~i~~~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S~ 212 (462)
...-..+..+|.+++.+.|+++...+|.+++. + -.-.+|+||-|+|-.+.
T Consensus 147 ~sE~~~ylpyl~k~l~e~Gvef~~r~v~~l~E-------~-----------------~~~~~DVivNCtGL~a~ 196 (342)
T KOG3923|consen 147 LSEGPKYLPYLKKRLTENGVEFVQRRVESLEE-------V-----------------ARPEYDVIVNCTGLGAG 196 (342)
T ss_pred eccchhhhHHHHHHHHhcCcEEEEeeeccHHH-------h-----------------ccCCCcEEEECCccccc
Confidence 45667899999999999999998877776651 0 11457999999998774
No 227
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.10 E-value=9.3e-06 Score=79.94 Aligned_cols=105 Identities=21% Similarity=0.244 Sum_probs=66.8
Q ss_pred cEEEECCchHHHHHHHHHHHC---CCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEecc
Q 012488 52 RVAVIGGGPAGGAAAETLAKN---GVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIG 128 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~---g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (462)
+|||||||+||+.+|..|+++ +.+|+|+|+++..... . . ++ .+. .+.
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~-~-~----------~~-~~~------------~g~----- 50 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYS-G-M----------LP-GMI------------AGH----- 50 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCccc-c-h----------hh-HHH------------hee-----
Confidence 489999999999999999644 6899999987631100 0 0 00 000 000
Q ss_pred CcccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcceeEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCC
Q 012488 129 QTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADG 208 (462)
Q Consensus 129 ~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG 208 (462)
.....+...+.+.+++.|++++.+.|++++. ++ ..|.+.+| .++++|.||.|+|
T Consensus 51 -----------~~~~~~~~~~~~~~~~~gv~~~~~~v~~id~---~~--~~V~~~~g----------~~~~yD~LviAtG 104 (364)
T TIGR03169 51 -----------YSLDEIRIDLRRLARQAGARFVIAEATGIDP---DR--RKVLLANR----------PPLSYDVLSLDVG 104 (364)
T ss_pred -----------CCHHHhcccHHHHHHhcCCEEEEEEEEEEec---cc--CEEEECCC----------CcccccEEEEccC
Confidence 0001111223344556799999888888872 22 25666666 6799999999999
Q ss_pred CChH
Q 012488 209 ANSR 212 (462)
Q Consensus 209 ~~S~ 212 (462)
....
T Consensus 105 ~~~~ 108 (364)
T TIGR03169 105 STTP 108 (364)
T ss_pred CCCC
Confidence 7664
No 228
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.08 E-value=1.5e-05 Score=81.87 Aligned_cols=39 Identities=36% Similarity=0.484 Sum_probs=35.9
Q ss_pred CCCCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCC
Q 012488 46 LTNRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLD 84 (462)
Q Consensus 46 ~~~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 84 (462)
|...++||+|||||.|||.+|+.++..|.+|+|+||...
T Consensus 2 ~~~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~ 40 (562)
T COG1053 2 MTIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPP 40 (562)
T ss_pred cccccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEcccc
Confidence 456679999999999999999999999999999999983
No 229
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.06 E-value=8.5e-06 Score=87.76 Aligned_cols=35 Identities=43% Similarity=0.557 Sum_probs=32.5
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
...+|+||||||||+++|..|++.|++|+|||+.+
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~ 464 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALH 464 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 45699999999999999999999999999999864
No 230
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.04 E-value=2.3e-05 Score=76.67 Aligned_cols=154 Identities=16% Similarity=0.136 Sum_probs=82.0
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCC---cccccC----c------cccccC----CCCh-hhH----h
Q 012488 52 RVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKP---CGGAIP----L------CMVGEF----DLPL-DII----D 109 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~---~g~~i~----~------~~l~~~----g~~~-~~~----~ 109 (462)
||+|||+|+|||++|+.|++. ++|+|+-|.+-.... -.++|. . +..+.| |+.+ +.+ .
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~ 87 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS 87 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 899999999999999999988 999999998732111 112231 1 000111 1111 111 0
Q ss_pred ccc--------ceEEEEcCCCceEeccCcc-cCCCeEEee---ehHHHHHHHHHHHHH-CCCEEEcce-eEEEEecCCCC
Q 012488 110 RKV--------TKMKMISPSNVAVDIGQTL-KPHEYIGMV---RREVLDAYLRERAEK-NGASVINGL-FMKMDLPRNFE 175 (462)
Q Consensus 110 ~~~--------~~~~~~~~~~~~~~~~~~~-~~~~~~~~v---~r~~l~~~L~~~~~~-~gv~i~~~~-v~~~~~~~~~~ 175 (462)
... .++.|-......+.++..- .....+.++ .-..+...|.+.+++ .+++++.+. +.++.. +++
T Consensus 88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~--~~~ 165 (518)
T COG0029 88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLII--EDG 165 (518)
T ss_pred hHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhh--cCC
Confidence 000 1111211110111111000 001111111 124677778888876 579999997 777762 233
Q ss_pred CCE-EEEEeccCCccCCCCceeEEEecEEEecCCCChHhh
Q 012488 176 QPY-VLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSRVA 214 (462)
Q Consensus 176 ~~~-~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S~vr 214 (462)
..+ .+.+.+. .++..++.++.||.|+|.-+.+=
T Consensus 166 ~~~~Gv~~~~~------~~~~~~~~a~~vVLATGG~g~ly 199 (518)
T COG0029 166 IGVAGVLVLNR------NGELGTFRAKAVVLATGGLGGLY 199 (518)
T ss_pred ceEeEEEEecC------CCeEEEEecCeEEEecCCCcccc
Confidence 123 4444432 12357899999999999988653
No 231
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.04 E-value=0.00012 Score=73.05 Aligned_cols=105 Identities=19% Similarity=0.228 Sum_probs=78.1
Q ss_pred CCCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEe
Q 012488 47 TNRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVD 126 (462)
Q Consensus 47 ~~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 126 (462)
...+-.++|||||+.|+=+|..+++.|.+|+|+|+.+... .. .+
T Consensus 170 ~~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iL------------p~--~D---------------------- 213 (454)
T COG1249 170 LELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRIL------------PG--ED---------------------- 213 (454)
T ss_pred ccCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC------------Cc--CC----------------------
Confidence 3456689999999999999999999999999999987320 00 00
Q ss_pred ccCcccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEe
Q 012488 127 IGQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIG 205 (462)
Q Consensus 127 ~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~ 205 (462)
.++.+.+.+..++.|++++.++ +..++ ..++ .+.++++++. ..++++|.|+.
T Consensus 214 ----------------~ei~~~~~~~l~~~gv~i~~~~~v~~~~--~~~~-~v~v~~~~g~--------~~~~~ad~vLv 266 (454)
T COG1249 214 ----------------PEISKELTKQLEKGGVKILLNTKVTAVE--KKDD-GVLVTLEDGE--------GGTIEADAVLV 266 (454)
T ss_pred ----------------HHHHHHHHHHHHhCCeEEEccceEEEEE--ecCC-eEEEEEecCC--------CCEEEeeEEEE
Confidence 1245666667777789999888 77776 2233 3888888762 12889999999
Q ss_pred cCCCChHhh
Q 012488 206 ADGANSRVA 214 (462)
Q Consensus 206 AdG~~S~vr 214 (462)
|.|+...+-
T Consensus 267 AiGR~Pn~~ 275 (454)
T COG1249 267 AIGRKPNTD 275 (454)
T ss_pred ccCCccCCC
Confidence 999877644
No 232
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=98.03 E-value=5e-05 Score=75.63 Aligned_cols=97 Identities=20% Similarity=0.249 Sum_probs=73.0
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEeccCc
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQT 130 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (462)
-+|+|||||+.|+-+|..|++.|.+|+|+|+.+... .. .
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l------------~~------~----------------------- 183 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVM------------GR------N----------------------- 183 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcch------------hh------h-----------------------
Confidence 479999999999999999999999999999875210 00 0
Q ss_pred ccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCC
Q 012488 131 LKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGA 209 (462)
Q Consensus 131 ~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~ 209 (462)
....+.+.+.+.+++.|++++.+. +.++. . ++.+.+.+.+| .++.+|+||.|.|.
T Consensus 184 ----------~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~---~-~~~~~v~l~~g----------~~i~aD~Vv~a~G~ 239 (396)
T PRK09754 184 ----------APPPVQRYLLQRHQQAGVRILLNNAIEHVV---D-GEKVELTLQSG----------ETLQADVVIYGIGI 239 (396)
T ss_pred ----------cCHHHHHHHHHHHHHCCCEEEeCCeeEEEE---c-CCEEEEEECCC----------CEEECCEEEECCCC
Confidence 001244566777778899999887 88876 1 33456667666 68999999999998
Q ss_pred ChH
Q 012488 210 NSR 212 (462)
Q Consensus 210 ~S~ 212 (462)
...
T Consensus 240 ~pn 242 (396)
T PRK09754 240 SAN 242 (396)
T ss_pred Chh
Confidence 664
No 233
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.01 E-value=4.9e-05 Score=77.36 Aligned_cols=100 Identities=16% Similarity=0.201 Sum_probs=74.1
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEeccC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQ 129 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (462)
.-+|+|||||+.|+-+|..|++.|.+|+|+|+.+... .. ++
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l------------~~--~d------------------------- 215 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLL------------SF--LD------------------------- 215 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC------------Cc--CC-------------------------
Confidence 4589999999999999999999999999999875210 00 00
Q ss_pred cccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCC
Q 012488 130 TLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADG 208 (462)
Q Consensus 130 ~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG 208 (462)
..+.+.|.+.+++.|++++.++ |..+.. .++.+.+++.++ .++++|.||.|.|
T Consensus 216 -------------~~~~~~l~~~l~~~gI~v~~~~~v~~i~~---~~~~~~v~~~~g----------~~i~~D~vi~a~G 269 (461)
T PRK05249 216 -------------DEISDALSYHLRDSGVTIRHNEEVEKVEG---GDDGVIVHLKSG----------KKIKADCLLYANG 269 (461)
T ss_pred -------------HHHHHHHHHHHHHcCCEEEECCEEEEEEE---eCCeEEEEECCC----------CEEEeCEEEEeec
Confidence 1134456666778899999887 888862 233466666555 5799999999999
Q ss_pred CChHhh
Q 012488 209 ANSRVA 214 (462)
Q Consensus 209 ~~S~vr 214 (462)
..+...
T Consensus 270 ~~p~~~ 275 (461)
T PRK05249 270 RTGNTD 275 (461)
T ss_pred CCcccc
Confidence 887643
No 234
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.00 E-value=4.9e-05 Score=77.34 Aligned_cols=102 Identities=23% Similarity=0.251 Sum_probs=74.3
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEeccC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQ 129 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (462)
.-+|+|||||+.|+-+|..|++.|.+|+++|+.+... .. ..
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l------------~~--~~------------------------- 212 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRIL------------PG--ED------------------------- 212 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcC------------Cc--CC-------------------------
Confidence 3489999999999999999999999999999875210 00 00
Q ss_pred cccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCC
Q 012488 130 TLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADG 208 (462)
Q Consensus 130 ~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG 208 (462)
..+.+.+.+.+++.|++++.+. |.+++. +++.+.+.+.++ ++..++.+|.||.|.|
T Consensus 213 -------------~~~~~~l~~~l~~~gV~i~~~~~V~~i~~---~~~~v~v~~~~g-------g~~~~i~~D~vi~a~G 269 (462)
T PRK06416 213 -------------KEISKLAERALKKRGIKIKTGAKAKKVEQ---TDDGVTVTLEDG-------GKEETLEADYVLVAVG 269 (462)
T ss_pred -------------HHHHHHHHHHHHHcCCEEEeCCEEEEEEE---eCCEEEEEEEeC-------CeeEEEEeCEEEEeeC
Confidence 1233555666778899999887 888872 233466666553 3346799999999999
Q ss_pred CChHh
Q 012488 209 ANSRV 213 (462)
Q Consensus 209 ~~S~v 213 (462)
..+..
T Consensus 270 ~~p~~ 274 (462)
T PRK06416 270 RRPNT 274 (462)
T ss_pred CccCC
Confidence 87653
No 235
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.00 E-value=6.6e-05 Score=73.54 Aligned_cols=34 Identities=32% Similarity=0.422 Sum_probs=29.3
Q ss_pred ccEEEECCchHHHHHHHHHHHC---CCcEEEEcCCCC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKN---GVETFLIERKLD 84 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~---g~~v~v~E~~~~ 84 (462)
++|+|||||++|+.+|.+|.+. .-.+.|||+.+.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~ 38 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPN 38 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccc
Confidence 6899999999999999999986 123999999874
No 236
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.98 E-value=4.2e-05 Score=75.63 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=29.5
Q ss_pred ccEEEECCchHHHHHHHHHHHC--CCcEEEEcCCC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKN--GVETFLIERKL 83 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~--g~~v~v~E~~~ 83 (462)
.+|+|||||+||+.+|..|++. ..+++|+++++
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~ 37 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADS 37 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCC
Confidence 4899999999999999999875 56899999876
No 237
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.97 E-value=8.1e-06 Score=82.54 Aligned_cols=37 Identities=32% Similarity=0.508 Sum_probs=34.1
Q ss_pred CCCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 47 TNRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 47 ~~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
..+..+|||||||+|||+||..|...|++|+|+|.+.
T Consensus 12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARd 48 (501)
T KOG0029|consen 12 AGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARD 48 (501)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccC
Confidence 3456799999999999999999999999999999987
No 238
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.96 E-value=2.5e-05 Score=75.42 Aligned_cols=146 Identities=21% Similarity=0.288 Sum_probs=88.4
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCC-----CCCCcccccCcc-ccccCCCChhhHhccc----ceEEE
Q 012488 48 NRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLD-----NCKPCGGAIPLC-MVGEFDLPLDIIDRKV----TKMKM 117 (462)
Q Consensus 48 ~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~-----~~~~~g~~i~~~-~l~~~g~~~~~~~~~~----~~~~~ 117 (462)
...|||||||||=||+-+|.+.+|.|-+.+++-.+-. .+.+.-+++... .+++.+..+.+...-. ..+++
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALdGl~~rvcD~s~vq~k~ 105 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALDGLCSRVCDQSGVQYKV 105 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccceeeeeehhhcchHhhhhhhhhhhHHH
Confidence 4578999999999999999999999999999987652 122333444432 2333332222222111 11112
Q ss_pred EcCCCceEeccCcccCCCeEEeeehHHHHHHHHHHHHHC-CCEEEcceeEEEEecCCCCCCE---EEEEeccCCccCCCC
Q 012488 118 ISPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRERAEKN-GASVINGLFMKMDLPRNFEQPY---VLYYTEYDGTKGGVG 193 (462)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~-gv~i~~~~v~~~~~~~~~~~~~---~v~~~~~~~~~~~~~ 193 (462)
.+.....--+ . .-..++|..+.+.+.+..... +.+|+.+.|.++.....++++. .|.+.+|
T Consensus 106 LNrs~GPAVw----g---~RAQiDR~lYkk~MQkei~st~nL~ire~~V~dliv~~~~~~~~~~~gV~l~dg-------- 170 (679)
T KOG2311|consen 106 LNRSKGPAVW----G---LRAQIDRKLYKKNMQKEISSTPNLEIREGAVADLIVEDPDDGHCVVSGVVLVDG-------- 170 (679)
T ss_pred hhccCCCccc----C---hHHhhhHHHHHHHHHHHhccCCcchhhhhhhhheeeccCCCCceEEEEEEEecC--------
Confidence 1111100001 1 111477888888887776554 5788888888877644443332 3456676
Q ss_pred ceeEEEecEEEecCCCC
Q 012488 194 EKRTLEVDAVIGADGAN 210 (462)
Q Consensus 194 ~~~~~~adlvI~AdG~~ 210 (462)
..+.++-||..+|..
T Consensus 171 --t~v~a~~VilTTGTF 185 (679)
T KOG2311|consen 171 --TVVYAESVILTTGTF 185 (679)
T ss_pred --cEeccceEEEeeccc
Confidence 899999999999853
No 239
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.96 E-value=8.1e-06 Score=80.54 Aligned_cols=33 Identities=45% Similarity=0.542 Sum_probs=31.8
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
++|+|+|||+|||++|..|+.+|++|+|+|+++
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~ 33 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYEARD 33 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEeccC
Confidence 379999999999999999999999999999998
No 240
>PRK07208 hypothetical protein; Provisional
Probab=97.95 E-value=9e-06 Score=83.19 Aligned_cols=35 Identities=37% Similarity=0.504 Sum_probs=32.7
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
++.||+|||||++||++|+.|+++|++|+|+|+.+
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~ 37 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADP 37 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 34689999999999999999999999999999987
No 241
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.95 E-value=8.3e-06 Score=83.70 Aligned_cols=33 Identities=45% Similarity=0.547 Sum_probs=31.9
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
.||+|||||++||++|..|+++|++|+|+|++.
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~ 34 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHA 34 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 589999999999999999999999999999997
No 242
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.93 E-value=9e-06 Score=83.37 Aligned_cols=64 Identities=11% Similarity=0.093 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCCChHhhhhhc
Q 012488 143 EVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSRVAKSIN 218 (462)
Q Consensus 143 ~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S~vr~~l~ 218 (462)
..+.+.|.+.+++.|++|+.++ |+++.. +++....|.+.+| .++++|.||.|.|.+..+.+.++
T Consensus 229 ~~l~~~L~~~~~~~G~~i~~~~~V~~I~~--~~~~~~gv~~~~g----------~~~~ad~vV~a~~~~~~~~~Ll~ 293 (493)
T TIGR02730 229 GQIAESLVKGLEKHGGQIRYRARVTKIIL--ENGKAVGVKLADG----------EKIYAKRIVSNATRWDTFGKLLK 293 (493)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeEEEe--cCCcEEEEEeCCC----------CEEEcCEEEECCChHHHHHHhCC
Confidence 4677788899999999999998 998874 2333445666665 68999999999999888877664
No 243
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.92 E-value=0.00014 Score=74.06 Aligned_cols=102 Identities=19% Similarity=0.176 Sum_probs=73.8
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEeccC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQ 129 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (462)
..+|+|||||++|+-+|..|++.|.+|+|+|+.+... .. +
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l------------~~--~-------------------------- 209 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRIL------------PG--E-------------------------- 209 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCC------------CC--C--------------------------
Confidence 3589999999999999999999999999999875210 00 0
Q ss_pred cccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCC
Q 012488 130 TLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADG 208 (462)
Q Consensus 130 ~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG 208 (462)
...+.+.+.+.+++.|++++.++ |.+++. +++.+.+...++ +..++.+|.||.|.|
T Consensus 210 ------------~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~---~~~~v~v~~~~g--------~~~~i~~D~vi~a~G 266 (461)
T TIGR01350 210 ------------DAEVSKVVAKALKKKGVKILTNTKVTAVEK---NDDQVVYENKGG--------ETETLTGEKVLVAVG 266 (461)
T ss_pred ------------CHHHHHHHHHHHHHcCCEEEeCCEEEEEEE---eCCEEEEEEeCC--------cEEEEEeCEEEEecC
Confidence 01233455667778899999887 888863 233455554443 235799999999999
Q ss_pred CChHhh
Q 012488 209 ANSRVA 214 (462)
Q Consensus 209 ~~S~vr 214 (462)
..+...
T Consensus 267 ~~p~~~ 272 (461)
T TIGR01350 267 RKPNTE 272 (461)
T ss_pred CcccCC
Confidence 887644
No 244
>PRK06116 glutathione reductase; Validated
Probab=97.91 E-value=7.3e-05 Score=75.80 Aligned_cols=99 Identities=27% Similarity=0.238 Sum_probs=73.2
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEeccC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQ 129 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (462)
.-+|+|||||+.|+-+|..|++.|.+|+++++.+... .. ..
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l------------~~--~~------------------------- 207 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPL------------RG--FD------------------------- 207 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCc------------cc--cC-------------------------
Confidence 3589999999999999999999999999999875210 00 00
Q ss_pred cccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCC
Q 012488 130 TLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADG 208 (462)
Q Consensus 130 ~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG 208 (462)
..+.+.+.+.+++.|++++.++ |.+++. ++++.+.+.+.+| .++.+|.||.|.|
T Consensus 208 -------------~~~~~~l~~~L~~~GV~i~~~~~V~~i~~--~~~g~~~v~~~~g----------~~i~~D~Vv~a~G 262 (450)
T PRK06116 208 -------------PDIRETLVEEMEKKGIRLHTNAVPKAVEK--NADGSLTLTLEDG----------ETLTVDCLIWAIG 262 (450)
T ss_pred -------------HHHHHHHHHHHHHCCcEEECCCEEEEEEE--cCCceEEEEEcCC----------cEEEeCEEEEeeC
Confidence 0133555666778899999887 888872 2233366666665 6799999999999
Q ss_pred CChH
Q 012488 209 ANSR 212 (462)
Q Consensus 209 ~~S~ 212 (462)
....
T Consensus 263 ~~p~ 266 (450)
T PRK06116 263 REPN 266 (450)
T ss_pred CCcC
Confidence 7654
No 245
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.90 E-value=1.4e-05 Score=78.00 Aligned_cols=33 Identities=21% Similarity=0.396 Sum_probs=31.6
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
+||+|||||++|+++|..|++.|.+|+|+|+++
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~ 34 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRN 34 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 699999999999999999999999999999976
No 246
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.90 E-value=1.7e-05 Score=80.01 Aligned_cols=36 Identities=42% Similarity=0.607 Sum_probs=32.8
Q ss_pred CCCccEEEECCchHHHHHHHHHHH--CCCcEEEEcCCC
Q 012488 48 NRNLRVAVIGGGPAGGAAAETLAK--NGVETFLIERKL 83 (462)
Q Consensus 48 ~~~~dVvIVGgG~aGl~~A~~L~~--~g~~v~v~E~~~ 83 (462)
....+|+||||||||+.+|..|++ .|++|+|||+.+
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p 61 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLP 61 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCC
Confidence 445689999999999999999987 799999999987
No 247
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.90 E-value=1.4e-05 Score=73.65 Aligned_cols=35 Identities=34% Similarity=0.520 Sum_probs=33.5
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
|++||+|||||+||+++|+.|+++|.++.|+-++.
T Consensus 1 M~fDv~IIGGGLAGltc~l~l~~~Gk~c~iv~~gQ 35 (421)
T COG3075 1 MNFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRGQ 35 (421)
T ss_pred CcccEEEEcCcHHHHHHHHHHHhcCCcEEEEeCCh
Confidence 68999999999999999999999999999999886
No 248
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.87 E-value=0.00017 Score=73.34 Aligned_cols=101 Identities=21% Similarity=0.287 Sum_probs=72.1
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEeccCc
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQT 130 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (462)
-+|+|||||+.|+-+|..|++.|.+|+|+|+.+... .. .
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l------------~~--~--------------------------- 205 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLL------------PR--E--------------------------- 205 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCC------------Cc--c---------------------------
Confidence 589999999999999999999999999999875210 00 0
Q ss_pred ccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCC
Q 012488 131 LKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGA 209 (462)
Q Consensus 131 ~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~ 209 (462)
-..+...+.+.+++.|++++.++ |..+.. +++.+.+.+.+. +...++.+|.||.|.|.
T Consensus 206 -----------d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~---~~~~~~v~~~~~-------~~~~~i~~D~ViiA~G~ 264 (463)
T TIGR02053 206 -----------EPEISAAVEEALAEEGIEVVTSAQVKAVSV---RGGGKIITVEKP-------GGQGEVEADELLVATGR 264 (463)
T ss_pred -----------CHHHHHHHHHHHHHcCCEEEcCcEEEEEEE---cCCEEEEEEEeC-------CCceEEEeCEEEEeECC
Confidence 01133455566677899999887 888872 223355555431 22368999999999998
Q ss_pred ChHh
Q 012488 210 NSRV 213 (462)
Q Consensus 210 ~S~v 213 (462)
.+..
T Consensus 265 ~p~~ 268 (463)
T TIGR02053 265 RPNT 268 (463)
T ss_pred CcCC
Confidence 7653
No 249
>PRK12831 putative oxidoreductase; Provisional
Probab=97.84 E-value=2e-05 Score=79.83 Aligned_cols=36 Identities=42% Similarity=0.578 Sum_probs=33.3
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 48 NRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 48 ~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
.+..||+||||||||+++|..|++.|++|+|||+.+
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~ 173 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALH 173 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence 456799999999999999999999999999999875
No 250
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.83 E-value=0.00036 Score=70.89 Aligned_cols=100 Identities=21% Similarity=0.382 Sum_probs=70.9
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEeccC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQ 129 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (462)
+-+|+|||||++|+-+|..|++.|.+|+|+|+.+.. ++ . .
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~l-----------------l~----------------~-----~-- 209 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQL-----------------LP----------------G-----E-- 209 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc-----------------Cc----------------c-----c--
Confidence 358999999999999999999999999999987521 00 0 0
Q ss_pred cccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCC
Q 012488 130 TLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADG 208 (462)
Q Consensus 130 ~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG 208 (462)
-..+.+.+.+.+++.|++++.++ +..++. ++..+.+ .++ ++..++.+|+||.|+|
T Consensus 210 ------------d~e~~~~l~~~L~~~GI~i~~~~~V~~i~~---~~~~v~~--~~~-------g~~~~i~~D~vivA~G 265 (458)
T PRK06912 210 ------------DEDIAHILREKLENDGVKIFTGAALKGLNS---YKKQALF--EYE-------GSIQEVNAEFVLVSVG 265 (458)
T ss_pred ------------cHHHHHHHHHHHHHCCCEEEECCEEEEEEE---cCCEEEE--EEC-------CceEEEEeCEEEEecC
Confidence 01234556666778899999887 888862 2222333 222 2235799999999999
Q ss_pred CChHh
Q 012488 209 ANSRV 213 (462)
Q Consensus 209 ~~S~v 213 (462)
..+.+
T Consensus 266 ~~p~~ 270 (458)
T PRK06912 266 RKPRV 270 (458)
T ss_pred CccCC
Confidence 88765
No 251
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.82 E-value=1.3e-05 Score=76.38 Aligned_cols=33 Identities=21% Similarity=0.469 Sum_probs=29.6
Q ss_pred ccEEEECCchHHHHHHHHHHHCC-CcEEEEcCCC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNG-VETFLIERKL 83 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g-~~v~v~E~~~ 83 (462)
||+||||+|++|+.+|..|++.| .+|+|+|+++
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~ 34 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGP 34 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSB
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccc
Confidence 79999999999999999999997 7999999998
No 252
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.82 E-value=0.00027 Score=72.08 Aligned_cols=103 Identities=23% Similarity=0.244 Sum_probs=74.7
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEeccC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQ 129 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (462)
.-+|+|||||+.|+-+|..|++.|.+|+|+|+.+... .. .
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l------------~~--~-------------------------- 222 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFL------------AA--A-------------------------- 222 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccC------------Cc--C--------------------------
Confidence 3589999999999999999999999999999875210 00 0
Q ss_pred cccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCC
Q 012488 130 TLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADG 208 (462)
Q Consensus 130 ~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG 208 (462)
+ ..+.+.+.+.+++.|++++.++ |..++. .++.+.+.+.++ +++..++.+|.||.|.|
T Consensus 223 -----------d-~~~~~~~~~~l~~~gi~i~~~~~v~~i~~---~~~~v~v~~~~~------~g~~~~i~~D~vl~a~G 281 (475)
T PRK06327 223 -----------D-EQVAKEAAKAFTKQGLDIHLGVKIGEIKT---GGKGVSVAYTDA------DGEAQTLEVDKLIVSIG 281 (475)
T ss_pred -----------C-HHHHHHHHHHHHHcCcEEEeCcEEEEEEE---cCCEEEEEEEeC------CCceeEEEcCEEEEccC
Confidence 0 1234455566667899999887 888872 233466666553 14446799999999999
Q ss_pred CChHh
Q 012488 209 ANSRV 213 (462)
Q Consensus 209 ~~S~v 213 (462)
..+..
T Consensus 282 ~~p~~ 286 (475)
T PRK06327 282 RVPNT 286 (475)
T ss_pred CccCC
Confidence 87764
No 253
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.82 E-value=2.3e-05 Score=77.76 Aligned_cols=35 Identities=37% Similarity=0.457 Sum_probs=33.2
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
|++||+|||+|++|+++|+.|+++|.+|+|+|++.
T Consensus 1 ~~~DviIIG~G~aGl~aA~~la~~g~~v~vi~~~~ 35 (422)
T PRK05329 1 MKFDVLVIGGGLAGLTAALAAAEAGKRVALVAKGQ 35 (422)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEECCC
Confidence 56899999999999999999999999999999875
No 254
>PLN02268 probable polyamine oxidase
Probab=97.81 E-value=2e-05 Score=79.65 Aligned_cols=33 Identities=42% Similarity=0.498 Sum_probs=31.4
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
.+|+|||||++||++|+.|.+.|++|+|+|+++
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~ 33 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRD 33 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 379999999999999999999999999999987
No 255
>PRK06370 mercuric reductase; Validated
Probab=97.81 E-value=0.00025 Score=72.17 Aligned_cols=102 Identities=22% Similarity=0.219 Sum_probs=72.2
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEeccC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQ 129 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (462)
.-+|+|||||+.|+-+|..|++.|.+|+|+|+.+... +. .
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l---------------------------------~~-----~-- 210 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLL---------------------------------PR-----E-- 210 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCC---------------------------------cc-----c--
Confidence 3589999999999999999999999999999875210 00 0
Q ss_pred cccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCC
Q 012488 130 TLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADG 208 (462)
Q Consensus 130 ~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG 208 (462)
-..+.+.+.+.+++.|++++.++ |.++.. +++.+.+.+... +...++.+|.||.|.|
T Consensus 211 ------------~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~---~~~~~~v~~~~~-------~~~~~i~~D~Vi~A~G 268 (463)
T PRK06370 211 ------------DEDVAAAVREILEREGIDVRLNAECIRVER---DGDGIAVGLDCN-------GGAPEITGSHILVAVG 268 (463)
T ss_pred ------------CHHHHHHHHHHHHhCCCEEEeCCEEEEEEE---cCCEEEEEEEeC-------CCceEEEeCEEEECcC
Confidence 01133455666778899999887 888872 223344544321 1226799999999999
Q ss_pred CChHh
Q 012488 209 ANSRV 213 (462)
Q Consensus 209 ~~S~v 213 (462)
.....
T Consensus 269 ~~pn~ 273 (463)
T PRK06370 269 RVPNT 273 (463)
T ss_pred CCcCC
Confidence 87654
No 256
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=97.81 E-value=0.00029 Score=71.89 Aligned_cols=102 Identities=26% Similarity=0.356 Sum_probs=71.7
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEeccC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQ 129 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (462)
.-+|+|||||++|+-+|..|++.|.+|+|+|+.+.. + +. .
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~i-----------------l----------------~~-----~-- 219 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRI-----------------L----------------PT-----E-- 219 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcc-----------------C----------------Cc-----C--
Confidence 358999999999999999999999999999987521 0 00 0
Q ss_pred cccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEE-EEeccCCccCCCCceeEEEecEEEecC
Q 012488 130 TLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVL-YYTEYDGTKGGVGEKRTLEVDAVIGAD 207 (462)
Q Consensus 130 ~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~adlvI~Ad 207 (462)
-..+.+.+.+.+++.|++++.++ |..+.. ..++.+.+ ...+ ++..++.+|.||.|.
T Consensus 220 ------------~~~~~~~l~~~l~~~gI~i~~~~~v~~i~~--~~~~~~~~~~~~~--------g~~~~i~~D~vi~a~ 277 (472)
T PRK05976 220 ------------DAELSKEVARLLKKLGVRVVTGAKVLGLTL--KKDGGVLIVAEHN--------GEEKTLEADKVLVSV 277 (472)
T ss_pred ------------CHHHHHHHHHHHHhcCCEEEeCcEEEEEEE--ecCCCEEEEEEeC--------CceEEEEeCEEEEee
Confidence 01234455566677899999887 888762 11223333 3333 333579999999999
Q ss_pred CCChHh
Q 012488 208 GANSRV 213 (462)
Q Consensus 208 G~~S~v 213 (462)
|.....
T Consensus 278 G~~p~~ 283 (472)
T PRK05976 278 GRRPNT 283 (472)
T ss_pred CCccCC
Confidence 987654
No 257
>PRK02106 choline dehydrogenase; Validated
Probab=97.81 E-value=2.2e-05 Score=81.71 Aligned_cols=38 Identities=29% Similarity=0.426 Sum_probs=34.8
Q ss_pred CCCCCccEEEECCchHHHHHHHHHHH-CCCcEEEEcCCC
Q 012488 46 LTNRNLRVAVIGGGPAGGAAAETLAK-NGVETFLIERKL 83 (462)
Q Consensus 46 ~~~~~~dVvIVGgG~aGl~~A~~L~~-~g~~v~v~E~~~ 83 (462)
|...++|+||||||++|+.+|..|++ .|++|+|+|+++
T Consensus 1 ~~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~ 39 (560)
T PRK02106 1 MTTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGG 39 (560)
T ss_pred CCCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCC
Confidence 34567999999999999999999999 799999999996
No 258
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.80 E-value=0.00022 Score=72.11 Aligned_cols=98 Identities=19% Similarity=0.222 Sum_probs=70.9
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEeccC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQ 129 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (462)
+-+|+|||||++|+-+|..|++.|.+|+|+|+.+... .. .
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l------------~~--~-------------------------- 196 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTIL------------PR--E-------------------------- 196 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccC------------CC--C--------------------------
Confidence 3489999999999999999999999999999875210 00 0
Q ss_pred cccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCC
Q 012488 130 TLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADG 208 (462)
Q Consensus 130 ~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG 208 (462)
...+.+.+.+.+++.|++++.++ |.++.. +++.+.+. .++ .++.+|.||.|.|
T Consensus 197 ------------~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~---~~~~v~v~-~~g----------~~i~~D~viva~G 250 (438)
T PRK07251 197 ------------EPSVAALAKQYMEEDGITFLLNAHTTEVKN---DGDQVLVV-TED----------ETYRFDALLYATG 250 (438)
T ss_pred ------------CHHHHHHHHHHHHHcCCEEEcCCEEEEEEe---cCCEEEEE-ECC----------eEEEcCEEEEeeC
Confidence 01133455566778899999887 888872 23334443 233 5799999999999
Q ss_pred CChHh
Q 012488 209 ANSRV 213 (462)
Q Consensus 209 ~~S~v 213 (462)
.....
T Consensus 251 ~~p~~ 255 (438)
T PRK07251 251 RKPNT 255 (438)
T ss_pred CCCCc
Confidence 87763
No 259
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.80 E-value=0.00021 Score=72.15 Aligned_cols=93 Identities=14% Similarity=0.151 Sum_probs=69.5
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEeccCc
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQT 130 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (462)
-+|+|||||+.|+-+|..|++.|.+|+|+|+.+... .. +
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~------------~~--~--------------------------- 187 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKIN------------KL--M--------------------------- 187 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccc------------hh--c---------------------------
Confidence 479999999999999999999999999999875210 00 0
Q ss_pred ccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCC
Q 012488 131 LKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGA 209 (462)
Q Consensus 131 ~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~ 209 (462)
+ ..+.+.+.+.+++.|++++.+. |.+++ . ..+++.++ .++.+|.||.|.|.
T Consensus 188 -d----------~~~~~~l~~~l~~~gI~i~~~~~v~~i~---~----~~v~~~~g----------~~~~~D~vl~a~G~ 239 (438)
T PRK13512 188 -D----------ADMNQPILDELDKREIPYRLNEEIDAIN---G----NEVTFKSG----------KVEHYDMIIEGVGT 239 (438)
T ss_pred -C----------HHHHHHHHHHHHhcCCEEEECCeEEEEe---C----CEEEECCC----------CEEEeCEEEECcCC
Confidence 0 1234556666778899999877 88876 1 23555555 57899999999998
Q ss_pred ChH
Q 012488 210 NSR 212 (462)
Q Consensus 210 ~S~ 212 (462)
...
T Consensus 240 ~pn 242 (438)
T PRK13512 240 HPN 242 (438)
T ss_pred CcC
Confidence 764
No 260
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.79 E-value=1.8e-05 Score=81.54 Aligned_cols=63 Identities=14% Similarity=0.177 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCCChHhhhhh
Q 012488 143 EVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSRVAKSI 217 (462)
Q Consensus 143 ~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S~vr~~l 217 (462)
..+.+.|.+.+++.|++|+.++ |.++.. +++..+.|.+.+| .++++|.||.|.+....+.+.+
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~--~~~~~~~V~~~~g----------~~~~ad~VI~a~~~~~~~~~l~ 282 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIET--EGGRATAVHLADG----------ERLDADAVVSNADLHHTYRRLL 282 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEe--eCCEEEEEEECCC----------CEEECCEEEECCcHHHHHHHhc
Confidence 4567788888889999999997 998873 2222355666665 6789999999999877666554
No 261
>PLN02568 polyamine oxidase
Probab=97.79 E-value=2.6e-05 Score=80.23 Aligned_cols=37 Identities=30% Similarity=0.398 Sum_probs=33.4
Q ss_pred CCCCccEEEECCchHHHHHHHHHHHCC-----CcEEEEcCCC
Q 012488 47 TNRNLRVAVIGGGPAGGAAAETLAKNG-----VETFLIERKL 83 (462)
Q Consensus 47 ~~~~~dVvIVGgG~aGl~~A~~L~~~g-----~~v~v~E~~~ 83 (462)
..+..||+|||||++||++|..|++.| ++|+|+|++.
T Consensus 2 ~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~ 43 (539)
T PLN02568 2 VAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGD 43 (539)
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCC
Confidence 344579999999999999999999887 9999999987
No 262
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=97.79 E-value=0.0003 Score=71.23 Aligned_cols=101 Identities=24% Similarity=0.260 Sum_probs=72.6
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEeccC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQ 129 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (462)
+-+|+|||||..|+-+|..|++.|.+|+|+|+.+... .. ++
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il------------~~--~d------------------------- 206 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL------------RS--FD------------------------- 206 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC------------cc--cC-------------------------
Confidence 3589999999999999999999999999999875210 00 00
Q ss_pred cccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCC
Q 012488 130 TLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADG 208 (462)
Q Consensus 130 ~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG 208 (462)
..+.+.+.+.+++.|++++.+. +.++.. +.++.+.+.+.++. .++.+|.||.|.|
T Consensus 207 -------------~~~~~~~~~~l~~~gI~i~~~~~v~~i~~--~~~~~~~v~~~~g~---------~~i~~D~vi~a~G 262 (450)
T TIGR01421 207 -------------SMISETITEEYEKEGINVHKLSKPVKVEK--TVEGKLVIHFEDGK---------SIDDVDELIWAIG 262 (450)
T ss_pred -------------HHHHHHHHHHHHHcCCEEEcCCEEEEEEE--eCCceEEEEECCCc---------EEEEcCEEEEeeC
Confidence 1133455666677899999887 888872 22233556665431 4799999999999
Q ss_pred CChHh
Q 012488 209 ANSRV 213 (462)
Q Consensus 209 ~~S~v 213 (462)
.....
T Consensus 263 ~~pn~ 267 (450)
T TIGR01421 263 RKPNT 267 (450)
T ss_pred CCcCc
Confidence 87653
No 263
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.78 E-value=0.00041 Score=70.57 Aligned_cols=104 Identities=19% Similarity=0.147 Sum_probs=73.3
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEeccC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQ 129 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (462)
.-+|+|||||+.|+-+|..|++.|.+|+|+|+.+.. + +. +
T Consensus 174 ~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~i-----------------l----------------~~-----~-- 213 (466)
T PRK06115 174 PKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRI-----------------C----------------PG-----T-- 213 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCC-----------------C----------------CC-----C--
Confidence 458999999999999999999999999999986521 0 00 0
Q ss_pred cccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCC
Q 012488 130 TLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADG 208 (462)
Q Consensus 130 ~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG 208 (462)
+ ..+.+.+.+.+++.|++++.++ |.+++. +++.+.+.+.+. ..+++.++.+|.||.|.|
T Consensus 214 --d----------~~~~~~l~~~l~~~gV~i~~~~~V~~i~~---~~~~v~v~~~~~-----~~g~~~~i~~D~vi~a~G 273 (466)
T PRK06115 214 --D----------TETAKTLQKALTKQGMKFKLGSKVTGATA---GADGVSLTLEPA-----AGGAAETLQADYVLVAIG 273 (466)
T ss_pred --C----------HHHHHHHHHHHHhcCCEEEECcEEEEEEE---cCCeEEEEEEEc-----CCCceeEEEeCEEEEccC
Confidence 0 1133556666777899999887 888872 223455555421 013346799999999999
Q ss_pred CChHh
Q 012488 209 ANSRV 213 (462)
Q Consensus 209 ~~S~v 213 (462)
..+..
T Consensus 274 ~~pn~ 278 (466)
T PRK06115 274 RRPYT 278 (466)
T ss_pred Ccccc
Confidence 87653
No 264
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.78 E-value=0.00022 Score=72.50 Aligned_cols=99 Identities=20% Similarity=0.190 Sum_probs=73.0
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEeccCc
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQT 130 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (462)
-+|+|||||..|+-+|..|++.|.+|+++|+.+... .. ..
T Consensus 178 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l------------~~--~d-------------------------- 217 (466)
T PRK07845 178 EHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVL------------PG--ED-------------------------- 217 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCC------------CC--CC--------------------------
Confidence 479999999999999999999999999999865210 00 00
Q ss_pred ccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCC
Q 012488 131 LKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGA 209 (462)
Q Consensus 131 ~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~ 209 (462)
..+...+.+..++.|++++.+. +.+++. .++.+.+.+.+| .++.+|.||.|.|.
T Consensus 218 ------------~~~~~~l~~~L~~~gV~i~~~~~v~~v~~---~~~~~~v~~~~g----------~~l~~D~vl~a~G~ 272 (466)
T PRK07845 218 ------------ADAAEVLEEVFARRGMTVLKRSRAESVER---TGDGVVVTLTDG----------RTVEGSHALMAVGS 272 (466)
T ss_pred ------------HHHHHHHHHHHHHCCcEEEcCCEEEEEEE---eCCEEEEEECCC----------cEEEecEEEEeecC
Confidence 0133455666678899999887 888862 233466666555 68999999999998
Q ss_pred ChHhh
Q 012488 210 NSRVA 214 (462)
Q Consensus 210 ~S~vr 214 (462)
.....
T Consensus 273 ~pn~~ 277 (466)
T PRK07845 273 VPNTA 277 (466)
T ss_pred CcCCC
Confidence 77643
No 265
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.77 E-value=0.00039 Score=70.78 Aligned_cols=103 Identities=20% Similarity=0.239 Sum_probs=72.4
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEeccC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQ 129 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (462)
+-+|+|||||+.|+-+|..|++.|.+|+|+|+.+... .. .
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l------------~~--~-------------------------- 211 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL------------PN--E-------------------------- 211 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC------------Cc--c--------------------------
Confidence 3489999999999999999999999999999764210 00 0
Q ss_pred cccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCC
Q 012488 130 TLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADG 208 (462)
Q Consensus 130 ~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG 208 (462)
-..+.+.+.+.+++.|++++.++ |.++.. +++.+.+.+... +++..++.+|.||.|.|
T Consensus 212 ------------d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~---~~~~~~v~~~~~------~g~~~~i~~D~vi~a~G 270 (466)
T PRK07818 212 ------------DAEVSKEIAKQYKKLGVKILTGTKVESIDD---NGSKVTVTVSKK------DGKAQELEADKVLQAIG 270 (466)
T ss_pred ------------CHHHHHHHHHHHHHCCCEEEECCEEEEEEE---eCCeEEEEEEec------CCCeEEEEeCEEEECcC
Confidence 01133445666778899999887 888862 233455555411 13335799999999999
Q ss_pred CChHh
Q 012488 209 ANSRV 213 (462)
Q Consensus 209 ~~S~v 213 (462)
.....
T Consensus 271 ~~pn~ 275 (466)
T PRK07818 271 FAPRV 275 (466)
T ss_pred cccCC
Confidence 87764
No 266
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=97.76 E-value=0.0003 Score=70.86 Aligned_cols=96 Identities=24% Similarity=0.250 Sum_probs=70.3
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEeccCc
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQT 130 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (462)
-+|+|||||++|+-+|..|++.|.+|+++++.+... . +.
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~-----------------~---------------~~--------- 176 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERIL-----------------N---------------KL--------- 176 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCcccC-----------------c---------------cc---------
Confidence 489999999999999999999999999999865210 0 00
Q ss_pred ccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCC
Q 012488 131 LKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGA 209 (462)
Q Consensus 131 ~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~ 209 (462)
.+ ..+.+.+.+.+++.|++++.+. +.++.. ++.+ +.+.+| .++.+|.||.|.|.
T Consensus 177 ---------~~-~~~~~~~~~~l~~~gV~v~~~~~v~~i~~----~~~~-v~~~~g----------~~i~~D~vi~a~G~ 231 (427)
T TIGR03385 177 ---------FD-EEMNQIVEEELKKHEINLRLNEEVDSIEG----EERV-KVFTSG----------GVYQADMVILATGI 231 (427)
T ss_pred ---------cC-HHHHHHHHHHHHHcCCEEEeCCEEEEEec----CCCE-EEEcCC----------CEEEeCEEEECCCc
Confidence 00 1244556667778899999877 888862 2223 445555 67999999999998
Q ss_pred ChH
Q 012488 210 NSR 212 (462)
Q Consensus 210 ~S~ 212 (462)
...
T Consensus 232 ~p~ 234 (427)
T TIGR03385 232 KPN 234 (427)
T ss_pred cCC
Confidence 754
No 267
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.76 E-value=9.4e-05 Score=68.86 Aligned_cols=147 Identities=16% Similarity=0.144 Sum_probs=82.6
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCC--CCCcccccCccccccCC-CChhhHhcccceEEEEcCCCce
Q 012488 48 NRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDN--CKPCGGAIPLCMVGEFD-LPLDIIDRKVTKMKMISPSNVA 124 (462)
Q Consensus 48 ~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~--~~~~g~~i~~~~l~~~g-~~~~~~~~~~~~~~~~~~~~~~ 124 (462)
...||.+|||||-.|++.|...+.+|.+|.|+|..-.. .-..-++++...+=... ..+.+... ..+.|.......
T Consensus 18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da--~~yG~~~~~~~~ 95 (478)
T KOG0405|consen 18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDA--KDYGFPINEEGS 95 (478)
T ss_pred ccccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhh--hhcCCccccccC
Confidence 34799999999999999999999999999999986311 11112344544331111 11111111 111111000011
Q ss_pred EeccCccc-CCCeEEeeehHHHHHHHHHHHHHCCCEEEcceeEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEE
Q 012488 125 VDIGQTLK-PHEYIGMVRREVLDAYLRERAEKNGASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAV 203 (462)
Q Consensus 125 ~~~~~~~~-~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlv 203 (462)
++|..... ... .+. +|..+..+.+...+++++.|+..-+ +.+.+.|...|+ ....++++.+
T Consensus 96 fdW~~ik~krda---yi~--RLngIY~~~L~k~~V~~i~G~a~f~-----~~~~v~V~~~d~--------~~~~Ytak~i 157 (478)
T KOG0405|consen 96 FDWKVIKQKRDA---YIL--RLNGIYKRNLAKAAVKLIEGRARFV-----SPGEVEVEVNDG--------TKIVYTAKHI 157 (478)
T ss_pred CcHHHHHhhhhH---HHH--HHHHHHHhhccccceeEEeeeEEEc-----CCCceEEEecCC--------eeEEEecceE
Confidence 12211000 011 122 3555566666677899998873322 234577777775 2356899999
Q ss_pred EecCCCChHhh
Q 012488 204 IGADGANSRVA 214 (462)
Q Consensus 204 I~AdG~~S~vr 214 (462)
+.|+|.+...-
T Consensus 158 LIAtGg~p~~P 168 (478)
T KOG0405|consen 158 LIATGGRPIIP 168 (478)
T ss_pred EEEeCCccCCC
Confidence 99999887654
No 268
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.75 E-value=7.2e-05 Score=71.38 Aligned_cols=150 Identities=14% Similarity=0.133 Sum_probs=91.5
Q ss_pred CCCCccEEEECCchHHHHHHHHHHHCC-CcEEEEcCCCCCCCCcccccCccccccCCCChhhHh--cccceEEEEc---C
Q 012488 47 TNRNLRVAVIGGGPAGGAAAETLAKNG-VETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIID--RKVTKMKMIS---P 120 (462)
Q Consensus 47 ~~~~~dVvIVGgG~aGl~~A~~L~~~g-~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~--~~~~~~~~~~---~ 120 (462)
....+|++.||-||.-|.+|+.|...+ .+++.+||++...-.-|-.++...|+---+ .+++. +....+.|.+ .
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGmllegstlQv~Fl-kDLVTl~~PTs~ySFLNYL~~ 80 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGMLLEGSTLQVPFL-KDLVTLVDPTSPYSFLNYLHE 80 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCcccCCccccccch-hhhccccCCCCchHHHHHHHH
Confidence 456789999999999999999999875 789999999976555554454333332111 11110 0111111111 1
Q ss_pred CCceEeccCcccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEE--EEEeccCCccCCCCceeE
Q 012488 121 SNVAVDIGQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYV--LYYTEYDGTKGGVGEKRT 197 (462)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~ 197 (462)
.++-+.+ .....+ .+.|.++.+++.-.+.+. -.++++. |++|.. -+.+.... +...++ ..
T Consensus 81 h~RLy~F---l~~e~f--~i~R~Ey~dY~~Waa~~l-~~~rfg~~V~~i~~-~~~d~~~~~~~~t~~~----------~~ 143 (436)
T COG3486 81 HGRLYEF---LNYETF--HIPRREYNDYCQWAASQL-PSLRFGEEVTDISS-LDGDAVVRLFVVTANG----------TV 143 (436)
T ss_pred cchHhhh---hhhhcc--cccHHHHHHHHHHHHhhC-CccccCCeeccccc-cCCcceeEEEEEcCCC----------cE
Confidence 1111111 111112 688999999999999887 6788888 887632 12222233 222222 59
Q ss_pred EEecEEEecCCCChHhh
Q 012488 198 LEVDAVIGADGANSRVA 214 (462)
Q Consensus 198 ~~adlvI~AdG~~S~vr 214 (462)
++|+-||...|....+-
T Consensus 144 y~ar~lVlg~G~~P~IP 160 (436)
T COG3486 144 YRARNLVLGVGTQPYIP 160 (436)
T ss_pred EEeeeEEEccCCCcCCC
Confidence 99999999999877653
No 269
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.75 E-value=3.9e-05 Score=70.73 Aligned_cols=35 Identities=23% Similarity=0.454 Sum_probs=32.9
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLD 84 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 84 (462)
.+|++|||+|++|+.+|..|++.|.+|+|+||++.
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~H 35 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNH 35 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEecccc
Confidence 37999999999999999999999999999999984
No 270
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=97.74 E-value=0.0001 Score=71.99 Aligned_cols=108 Identities=20% Similarity=0.298 Sum_probs=67.7
Q ss_pred CccEEEECCchHHHHHHHHHHHCC--CcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEec
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNG--VETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDI 127 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g--~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (462)
+..|||||||.+|+.+|..|.++- .+++++|++.-.. + ..++.+-. .+. ++
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl------~-----------~plL~eva--------~g~-l~- 55 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHL------F-----------TPLLYEVA--------TGT-LS- 55 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccc------c-----------chhhhhhh--------cCC-CC-
Confidence 457999999999999999999974 8999999987210 0 00100000 000 00
Q ss_pred cCcccCCCeEEeeehHHHHHHHHHHHHHCC-CEEEcceeEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEec
Q 012488 128 GQTLKPHEYIGMVRREVLDAYLRERAEKNG-ASVINGLFMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGA 206 (462)
Q Consensus 128 ~~~~~~~~~~~~v~r~~l~~~L~~~~~~~g-v~i~~~~v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~A 206 (462)
.. ...--+.+.++..+ ++++.++|++|+. + .-+|.+.++ .++..|.+|.|
T Consensus 56 -----~~---------~i~~p~~~~~~~~~~v~~~~~~V~~ID~---~--~k~V~~~~~----------~~i~YD~LVva 106 (405)
T COG1252 56 -----ES---------EIAIPLRALLRKSGNVQFVQGEVTDIDR---D--AKKVTLADL----------GEISYDYLVVA 106 (405)
T ss_pred -----hh---------heeccHHHHhcccCceEEEEEEEEEEcc---c--CCEEEeCCC----------ccccccEEEEe
Confidence 00 00111222233334 8999999999983 2 234556554 68999999999
Q ss_pred CCCChHh
Q 012488 207 DGANSRV 213 (462)
Q Consensus 207 dG~~S~v 213 (462)
.|.....
T Consensus 107 lGs~~~~ 113 (405)
T COG1252 107 LGSETNY 113 (405)
T ss_pred cCCcCCc
Confidence 9987653
No 271
>PLN02507 glutathione reductase
Probab=97.73 E-value=0.00035 Score=71.58 Aligned_cols=99 Identities=18% Similarity=0.135 Sum_probs=72.5
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEeccC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQ 129 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (462)
.-+|+|||||+.|+-+|..|++.|.+|+|+++.+... .. ++
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l------------~~--~d------------------------- 243 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPL------------RG--FD------------------------- 243 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcC------------cc--cC-------------------------
Confidence 3489999999999999999999999999999765210 00 00
Q ss_pred cccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCC
Q 012488 130 TLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADG 208 (462)
Q Consensus 130 ~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG 208 (462)
..+.+.+.+.+++.|++++.+. |.+++. +++.+.+.+.++ .++.+|.||.|.|
T Consensus 244 -------------~~~~~~l~~~l~~~GI~i~~~~~V~~i~~---~~~~~~v~~~~g----------~~i~~D~vl~a~G 297 (499)
T PLN02507 244 -------------DEMRAVVARNLEGRGINLHPRTNLTQLTK---TEGGIKVITDHG----------EEFVADVVLFATG 297 (499)
T ss_pred -------------HHHHHHHHHHHHhCCCEEEeCCEEEEEEE---eCCeEEEEECCC----------cEEEcCEEEEeec
Confidence 1133445566677899999887 888872 233466665554 6799999999999
Q ss_pred CChHh
Q 012488 209 ANSRV 213 (462)
Q Consensus 209 ~~S~v 213 (462)
.....
T Consensus 298 ~~pn~ 302 (499)
T PLN02507 298 RAPNT 302 (499)
T ss_pred CCCCC
Confidence 87764
No 272
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.72 E-value=3.3e-05 Score=77.26 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=33.6
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
.++||+|||+|.+||.+|..|++.|.+|+++|+++
T Consensus 3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~ 37 (443)
T PTZ00363 3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNP 37 (443)
T ss_pred CcceEEEECCChHHHHHHhhhhhCCCEEEEecCCC
Confidence 46999999999999999999999999999999997
No 273
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.71 E-value=3.4e-05 Score=78.33 Aligned_cols=32 Identities=38% Similarity=0.528 Sum_probs=30.8
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 52 RVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
+|+|||||++||++|+.|+++|++|+|+|+.+
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~ 32 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARD 32 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 58999999999999999999999999999987
No 274
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.71 E-value=4.5e-05 Score=77.87 Aligned_cols=35 Identities=23% Similarity=0.390 Sum_probs=33.0
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDN 85 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~ 85 (462)
+||+|||+||+|+++|..|+++|++|+|||++...
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~ 35 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAAD 35 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCcc
Confidence 69999999999999999999999999999999843
No 275
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.70 E-value=8.9e-05 Score=80.05 Aligned_cols=105 Identities=21% Similarity=0.276 Sum_probs=64.4
Q ss_pred EEEECCchHHHHHHHHHHHC---CCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEeccC
Q 012488 53 VAVIGGGPAGGAAAETLAKN---GVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQ 129 (462)
Q Consensus 53 VvIVGgG~aGl~~A~~L~~~---g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (462)
|||||||+||+.+|..|.+. +++|+|||+.+... + .+..++. +. .+.. ..
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~------y-----~r~~L~~-~l------------~g~~-~~-- 53 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPN------Y-----NRILLSS-VL------------QGEA-DL-- 53 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCC------c-----ccccccH-HH------------CCCC-CH--
Confidence 68999999999999998775 57999999887321 0 0111111 00 0000 00
Q ss_pred cccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCC
Q 012488 130 TLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADG 208 (462)
Q Consensus 130 ~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG 208 (462)
..+.....+..++.|++++.++ |+.++. . ...|.+.+| .++.+|.||.|+|
T Consensus 54 -------------~~l~~~~~~~~~~~gv~~~~g~~V~~Id~----~-~k~V~~~~g----------~~~~yD~LVlATG 105 (785)
T TIGR02374 54 -------------DDITLNSKDWYEKHGITLYTGETVIQIDT----D-QKQVITDAG----------RTLSYDKLILATG 105 (785)
T ss_pred -------------HHccCCCHHHHHHCCCEEEcCCeEEEEEC----C-CCEEEECCC----------cEeeCCEEEECCC
Confidence 0000001122345799999886 888872 1 234556665 6899999999999
Q ss_pred CChH
Q 012488 209 ANSR 212 (462)
Q Consensus 209 ~~S~ 212 (462)
....
T Consensus 106 s~p~ 109 (785)
T TIGR02374 106 SYPF 109 (785)
T ss_pred CCcC
Confidence 7654
No 276
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.70 E-value=4.8e-05 Score=76.89 Aligned_cols=36 Identities=44% Similarity=0.563 Sum_probs=33.3
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 48 NRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 48 ~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
....+|+||||||+|+++|..|++.|++|+|||+.+
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~ 166 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGHSVTVFEALH 166 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 345799999999999999999999999999999875
No 277
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.70 E-value=3.8e-05 Score=82.08 Aligned_cols=35 Identities=29% Similarity=0.337 Sum_probs=32.2
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
...+|+||||||||+++|+.|++.|++|+|||+.+
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~ 416 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK 416 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence 45689999999999999999999999999999853
No 278
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.70 E-value=3.9e-05 Score=74.44 Aligned_cols=36 Identities=42% Similarity=0.572 Sum_probs=33.4
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCC
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLD 84 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 84 (462)
+.-+|+|||||+||+++|+.|++.|++|+++||++.
T Consensus 123 v~~svLVIGGGvAGitAAl~La~~G~~v~LVEKeps 158 (622)
T COG1148 123 VSKSVLVIGGGVAGITAALELADMGFKVYLVEKEPS 158 (622)
T ss_pred hccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCc
Confidence 345899999999999999999999999999999984
No 279
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.70 E-value=5.2e-05 Score=83.55 Aligned_cols=35 Identities=43% Similarity=0.527 Sum_probs=32.8
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
...+|+|||||||||++|..|+++|++|+|||+.+
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~ 463 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALH 463 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence 45699999999999999999999999999999986
No 280
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.69 E-value=0.00017 Score=78.17 Aligned_cols=107 Identities=22% Similarity=0.239 Sum_probs=66.2
Q ss_pred ccEEEECCchHHHHHHHHHHHC----CCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEe
Q 012488 51 LRVAVIGGGPAGGAAAETLAKN----GVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVD 126 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~----g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 126 (462)
.+|+|||+|+||+.+|..|.+. +++|+||++.+.... .+..++..+ .+..
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y-----------~r~~L~~~~-------------~~~~-- 57 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAY-----------DRVHLSSYF-------------SHHT-- 57 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcc-----------cCCcchHhH-------------cCCC--
Confidence 4899999999999999999764 589999998873210 011111100 0000
Q ss_pred ccCcccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEe
Q 012488 127 IGQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIG 205 (462)
Q Consensus 127 ~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~ 205 (462)
. ..+.....+..++.|++++.++ |..+.. . ..+|.+.+| .++.+|.||.
T Consensus 58 ~---------------~~l~~~~~~~~~~~gI~~~~g~~V~~Id~----~-~~~V~~~~G----------~~i~yD~LVI 107 (847)
T PRK14989 58 A---------------EELSLVREGFYEKHGIKVLVGERAITINR----Q-EKVIHSSAG----------RTVFYDKLIM 107 (847)
T ss_pred H---------------HHccCCCHHHHHhCCCEEEcCCEEEEEeC----C-CcEEEECCC----------cEEECCEEEE
Confidence 0 0000001122345689999887 888862 1 234555555 6899999999
Q ss_pred cCCCChHh
Q 012488 206 ADGANSRV 213 (462)
Q Consensus 206 AdG~~S~v 213 (462)
|+|....+
T Consensus 108 ATGs~p~~ 115 (847)
T PRK14989 108 ATGSYPWI 115 (847)
T ss_pred CCCCCcCC
Confidence 99976543
No 281
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.69 E-value=0.00059 Score=69.58 Aligned_cols=101 Identities=24% Similarity=0.237 Sum_probs=71.8
Q ss_pred CccEEEECCchHHHHHHHHHHHC---CCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEe
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKN---GVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVD 126 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~---g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 126 (462)
.-+|+|||||+.|+-+|..++.. |.+|+|+|+.+... .. +
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il------------~~--~----------------------- 229 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL------------RG--F----------------------- 229 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc------------cc--c-----------------------
Confidence 35899999999999999776543 99999999875210 00 0
Q ss_pred ccCcccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEe
Q 012488 127 IGQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIG 205 (462)
Q Consensus 127 ~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~ 205 (462)
+ ..+.+.+.+.+++.|++++.++ +.++.. .+++...+.+.++ .++.+|.||.
T Consensus 230 -----d----------~~~~~~l~~~L~~~GI~i~~~~~v~~i~~--~~~~~~~v~~~~g----------~~i~~D~vl~ 282 (486)
T TIGR01423 230 -----D----------STLRKELTKQLRANGINIMTNENPAKVTL--NADGSKHVTFESG----------KTLDVDVVMM 282 (486)
T ss_pred -----C----------HHHHHHHHHHHHHcCCEEEcCCEEEEEEE--cCCceEEEEEcCC----------CEEEcCEEEE
Confidence 0 1244556667778899999887 888872 2233355666555 5899999999
Q ss_pred cCCCChHhh
Q 012488 206 ADGANSRVA 214 (462)
Q Consensus 206 AdG~~S~vr 214 (462)
|.|......
T Consensus 283 a~G~~Pn~~ 291 (486)
T TIGR01423 283 AIGRVPRTQ 291 (486)
T ss_pred eeCCCcCcc
Confidence 999877643
No 282
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=97.69 E-value=0.00047 Score=69.80 Aligned_cols=98 Identities=17% Similarity=0.183 Sum_probs=71.6
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEeccC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQ 129 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (462)
.-+|+|||||+.|+-+|..|++.|.+|+|+|+.+.. +.. +
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~------------l~~--~-------------------------- 205 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELI------------LRG--F-------------------------- 205 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCC------------Ccc--c--------------------------
Confidence 347999999999999999999999999999986521 000 0
Q ss_pred cccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCC
Q 012488 130 TLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADG 208 (462)
Q Consensus 130 ~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG 208 (462)
+ ..+.+.+.+.+++.|++++.+. |.++.. . ++.+.+.+.++ .++.+|.||.|.|
T Consensus 206 -----------d-~~~~~~l~~~l~~~gV~i~~~~~v~~i~~--~-~~~~~v~~~~g----------~~i~~D~viva~G 260 (446)
T TIGR01424 206 -----------D-DDMRALLARNMEGRGIRIHPQTSLTSITK--T-DDGLKVTLSHG----------EEIVADVVLFATG 260 (446)
T ss_pred -----------C-HHHHHHHHHHHHHCCCEEEeCCEEEEEEE--c-CCeEEEEEcCC----------cEeecCEEEEeeC
Confidence 0 1233445566778899999887 888862 2 23366666555 6899999999999
Q ss_pred CChH
Q 012488 209 ANSR 212 (462)
Q Consensus 209 ~~S~ 212 (462)
....
T Consensus 261 ~~pn 264 (446)
T TIGR01424 261 RSPN 264 (446)
T ss_pred CCcC
Confidence 7654
No 283
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.66 E-value=6e-05 Score=76.75 Aligned_cols=36 Identities=44% Similarity=0.632 Sum_probs=33.3
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 48 NRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 48 ~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
....+|+||||||+|+++|..|++.|++|+|||+.+
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~ 176 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERAD 176 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 345799999999999999999999999999999986
No 284
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=97.64 E-value=0.0004 Score=75.04 Aligned_cols=98 Identities=20% Similarity=0.291 Sum_probs=72.3
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEeccCc
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQT 130 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (462)
-+|+|||||+.|+-+|..|++.|.+|+|+|+.+.. +. . .+
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~l------------l~-----~--------------------~l--- 180 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGL------------MA-----K--------------------QL--- 180 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCch------------hh-----h--------------------hc---
Confidence 37999999999999999999999999999976421 00 0 00
Q ss_pred ccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCC
Q 012488 131 LKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGA 209 (462)
Q Consensus 131 ~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~ 209 (462)
+ ..+.+.+.+..++.|++++.++ ++.+. .++....|.+.+| .++.+|+||.|.|.
T Consensus 181 -d----------~~~~~~l~~~l~~~GV~v~~~~~v~~i~---~~~~~~~v~~~dG----------~~i~~D~Vi~a~G~ 236 (785)
T TIGR02374 181 -D----------QTAGRLLQRELEQKGLTFLLEKDTVEIV---GATKADRIRFKDG----------SSLEADLIVMAAGI 236 (785)
T ss_pred -C----------HHHHHHHHHHHHHcCCEEEeCCceEEEE---cCCceEEEEECCC----------CEEEcCEEEECCCC
Confidence 0 1133555666778899999888 88776 2233355777776 68999999999998
Q ss_pred ChH
Q 012488 210 NSR 212 (462)
Q Consensus 210 ~S~ 212 (462)
...
T Consensus 237 ~Pn 239 (785)
T TIGR02374 237 RPN 239 (785)
T ss_pred CcC
Confidence 754
No 285
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.64 E-value=4.9e-05 Score=75.22 Aligned_cols=32 Identities=50% Similarity=0.653 Sum_probs=30.7
Q ss_pred cEEEECCchHHHHHHHHHHHCC--CcEEEEcCCC
Q 012488 52 RVAVIGGGPAGGAAAETLAKNG--VETFLIERKL 83 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g--~~v~v~E~~~ 83 (462)
.|+|||||++||++|+.|++++ ++++|||+.+
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~ 35 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADD 35 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCC
Confidence 6999999999999999999999 9999999986
No 286
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=97.64 E-value=8.1e-05 Score=75.63 Aligned_cols=36 Identities=31% Similarity=0.317 Sum_probs=32.5
Q ss_pred CCCccEEEECCchHHHHHHHHHHHC----CCcEEEEcCCC
Q 012488 48 NRNLRVAVIGGGPAGGAAAETLAKN----GVETFLIERKL 83 (462)
Q Consensus 48 ~~~~dVvIVGgG~aGl~~A~~L~~~----g~~v~v~E~~~ 83 (462)
..+.+|+|||||+|||++|..|.+. |.+|+|+|+.+
T Consensus 20 ~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~ 59 (576)
T PRK13977 20 VDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELD 59 (576)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCC
Confidence 3456999999999999999999985 78999999998
No 287
>PRK07846 mycothione reductase; Reviewed
Probab=97.64 E-value=0.00037 Score=70.55 Aligned_cols=98 Identities=17% Similarity=0.144 Sum_probs=68.2
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEeccC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQ 129 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (462)
+-+|+|||||+.|+-+|..|++.|.+|+|+|+.+... .. .+.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll------------~~--~d~------------------------ 207 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL------------RH--LDD------------------------ 207 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc------------cc--cCH------------------------
Confidence 3589999999999999999999999999999865210 00 000
Q ss_pred cccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCC
Q 012488 130 TLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADG 208 (462)
Q Consensus 130 ~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG 208 (462)
.+.+.+.+. .+.|++++.+. +.+++. +++.+.+.+.++ .++.+|.||.|.|
T Consensus 208 --------------~~~~~l~~l-~~~~v~i~~~~~v~~i~~---~~~~v~v~~~~g----------~~i~~D~vl~a~G 259 (451)
T PRK07846 208 --------------DISERFTEL-ASKRWDVRLGRNVVGVSQ---DGSGVTLRLDDG----------STVEADVLLVATG 259 (451)
T ss_pred --------------HHHHHHHHH-HhcCeEEEeCCEEEEEEE---cCCEEEEEECCC----------cEeecCEEEEEEC
Confidence 011222222 24578888776 888862 233466666555 6899999999999
Q ss_pred CChHh
Q 012488 209 ANSRV 213 (462)
Q Consensus 209 ~~S~v 213 (462)
..+..
T Consensus 260 ~~pn~ 264 (451)
T PRK07846 260 RVPNG 264 (451)
T ss_pred CccCc
Confidence 87753
No 288
>PTZ00058 glutathione reductase; Provisional
Probab=97.64 E-value=0.0007 Score=70.02 Aligned_cols=100 Identities=17% Similarity=0.253 Sum_probs=71.0
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEeccC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQ 129 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (462)
.-+|+|||||..|+-+|..|++.|.+|+|+|+.+... .. +
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il------------~~--~-------------------------- 276 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL------------RK--F-------------------------- 276 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc------------cc--C--------------------------
Confidence 4589999999999999999999999999999865210 00 0
Q ss_pred cccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCC
Q 012488 130 TLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADG 208 (462)
Q Consensus 130 ~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG 208 (462)
+ ..+.+.+.+.+++.|++++.+. +.+++. ++++.+.+.+.++ ..++++|.||.|.|
T Consensus 277 -----------d-~~i~~~l~~~L~~~GV~i~~~~~V~~I~~--~~~~~v~v~~~~~---------~~~i~aD~VlvA~G 333 (561)
T PTZ00058 277 -----------D-ETIINELENDMKKNNINIITHANVEEIEK--VKEKNLTIYLSDG---------RKYEHFDYVIYCVG 333 (561)
T ss_pred -----------C-HHHHHHHHHHHHHCCCEEEeCCEEEEEEe--cCCCcEEEEECCC---------CEEEECCEEEECcC
Confidence 0 1133445566677899999887 888872 2222355544333 15799999999999
Q ss_pred CChH
Q 012488 209 ANSR 212 (462)
Q Consensus 209 ~~S~ 212 (462)
....
T Consensus 334 r~Pn 337 (561)
T PTZ00058 334 RSPN 337 (561)
T ss_pred CCCC
Confidence 7665
No 289
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.63 E-value=6.3e-05 Score=79.78 Aligned_cols=35 Identities=49% Similarity=0.751 Sum_probs=32.6
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
...+|+|||||||||++|..|++.|++|+|||+.+
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~ 360 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHP 360 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 35699999999999999999999999999999876
No 290
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.00044 Score=64.25 Aligned_cols=47 Identities=21% Similarity=0.266 Sum_probs=37.5
Q ss_pred CCCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCccccc
Q 012488 47 TNRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAI 93 (462)
Q Consensus 47 ~~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i 93 (462)
..-+||.+|||||-+||++|...+..|.+|.++|--.+.+....|++
T Consensus 16 ~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGl 62 (503)
T KOG4716|consen 16 SSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGL 62 (503)
T ss_pred ccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCcccc
Confidence 34579999999999999999999999999999997654333333333
No 291
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.62 E-value=0.00072 Score=68.88 Aligned_cols=102 Identities=17% Similarity=0.125 Sum_probs=70.4
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEeccCc
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQT 130 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (462)
-+|+|||||+.|+-+|..|++.|.+|+|+|+.+... .. .+
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il------------~~--~d-------------------------- 214 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVI------------PA--AD-------------------------- 214 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCC------------Cc--CC--------------------------
Confidence 589999999999999999999999999999875210 00 00
Q ss_pred ccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCC
Q 012488 131 LKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGA 209 (462)
Q Consensus 131 ~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~ 209 (462)
..+.+.+.+.+++. ++++.+. |..++. .++.+.+.+.+++ ++..++.+|.||.|.|.
T Consensus 215 ------------~~~~~~~~~~l~~~-v~i~~~~~v~~i~~---~~~~~~v~~~~~~------~~~~~i~~D~vi~a~G~ 272 (471)
T PRK06467 215 ------------KDIVKVFTKRIKKQ-FNIMLETKVTAVEA---KEDGIYVTMEGKK------APAEPQRYDAVLVAVGR 272 (471)
T ss_pred ------------HHHHHHHHHHHhhc-eEEEcCCEEEEEEE---cCCEEEEEEEeCC------CcceEEEeCEEEEeecc
Confidence 11233444555555 7888776 877762 2334566665431 22367999999999998
Q ss_pred ChHhh
Q 012488 210 NSRVA 214 (462)
Q Consensus 210 ~S~vr 214 (462)
.+...
T Consensus 273 ~pn~~ 277 (471)
T PRK06467 273 VPNGK 277 (471)
T ss_pred cccCC
Confidence 87653
No 292
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=97.59 E-value=0.00059 Score=73.98 Aligned_cols=100 Identities=27% Similarity=0.321 Sum_probs=73.3
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEeccCc
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQT 130 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (462)
-.++|||||+.|+-+|..|++.|.+|+|+|+.+.. ++.. +
T Consensus 146 k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~l-----------------l~~~--------------------l--- 185 (847)
T PRK14989 146 KRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPML-----------------MAEQ--------------------L--- 185 (847)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeccccc-----------------hhhh--------------------c---
Confidence 37999999999999999999999999999986421 0000 0
Q ss_pred ccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCC
Q 012488 131 LKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGA 209 (462)
Q Consensus 131 ~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~ 209 (462)
+ ....+.+.+.+++.|++++.++ +..+... ..+....+.+.+| .++.+|+||.|.|.
T Consensus 186 -d----------~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~-~~~~~~~v~~~dG----------~~i~~D~Vv~A~G~ 243 (847)
T PRK14989 186 -D----------QMGGEQLRRKIESMGVRVHTSKNTLEIVQE-GVEARKTMRFADG----------SELEVDFIVFSTGI 243 (847)
T ss_pred -C----------HHHHHHHHHHHHHCCCEEEcCCeEEEEEec-CCCceEEEEECCC----------CEEEcCEEEECCCc
Confidence 0 1133556677778899999988 8888621 1123355677776 78999999999998
Q ss_pred ChH
Q 012488 210 NSR 212 (462)
Q Consensus 210 ~S~ 212 (462)
...
T Consensus 244 rPn 246 (847)
T PRK14989 244 RPQ 246 (847)
T ss_pred ccC
Confidence 775
No 293
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.57 E-value=8.5e-05 Score=75.44 Aligned_cols=36 Identities=42% Similarity=0.627 Sum_probs=33.3
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 48 NRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 48 ~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
....+|+||||||+|+.+|..|++.|++|+|+|+.+
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~ 173 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARD 173 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCC
Confidence 445799999999999999999999999999999876
No 294
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.56 E-value=0.00057 Score=63.14 Aligned_cols=32 Identities=38% Similarity=0.533 Sum_probs=29.7
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 52 RVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
.|||||+|.|||+++..+-..|-.|+++|+..
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~ 42 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAG 42 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEEEeccC
Confidence 69999999999999999998877799999987
No 295
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.56 E-value=7.3e-05 Score=76.10 Aligned_cols=32 Identities=34% Similarity=0.489 Sum_probs=30.8
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 52 RVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
+|+|||||++||++|+.|+++|++|+|+|+++
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~ 32 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRS 32 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence 58999999999999999999999999999987
No 296
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.55 E-value=0.0011 Score=67.14 Aligned_cols=97 Identities=18% Similarity=0.196 Sum_probs=70.2
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEeccCc
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQT 130 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (462)
-+|+|||||+.|+-+|..|++.|.+|+|+|+.+... ..+
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l------------~~~----------------------------- 197 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL------------PRE----------------------------- 197 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC------------CCc-----------------------------
Confidence 489999999999999999999999999999864210 000
Q ss_pred ccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCC
Q 012488 131 LKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGA 209 (462)
Q Consensus 131 ~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~ 209 (462)
+ ..+.+.+.+.+++.|++++.++ +.++.. +++.+.+...+ .++.+|.||.|.|.
T Consensus 198 -~----------~~~~~~l~~~l~~~gV~v~~~~~v~~i~~---~~~~v~v~~~~-----------g~i~~D~vl~a~G~ 252 (441)
T PRK08010 198 -D----------RDIADNIATILRDQGVDIILNAHVERISH---HENQVQVHSEH-----------AQLAVDALLIASGR 252 (441)
T ss_pred -C----------HHHHHHHHHHHHhCCCEEEeCCEEEEEEE---cCCEEEEEEcC-----------CeEEeCEEEEeecC
Confidence 0 1133456667778899999887 888872 23335454333 35889999999998
Q ss_pred ChHh
Q 012488 210 NSRV 213 (462)
Q Consensus 210 ~S~v 213 (462)
.+..
T Consensus 253 ~pn~ 256 (441)
T PRK08010 253 QPAT 256 (441)
T ss_pred CcCC
Confidence 7754
No 297
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.54 E-value=0.0001 Score=73.54 Aligned_cols=35 Identities=23% Similarity=0.428 Sum_probs=31.0
Q ss_pred CCccEEEECCchHHHHHHHHHH-HCCCcEEEEcCCC
Q 012488 49 RNLRVAVIGGGPAGGAAAETLA-KNGVETFLIERKL 83 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~-~~g~~v~v~E~~~ 83 (462)
.+..|+||||||||+.+|..|. +.|++|+||||.+
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p 73 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLP 73 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 3468999999999999999764 6799999999998
No 298
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.54 E-value=0.001 Score=67.37 Aligned_cols=97 Identities=20% Similarity=0.222 Sum_probs=69.1
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEeccCc
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQT 130 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (462)
-+|+|||||++|+-+|..|++.|.+|+++++.+.. ++ . .+
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~-----------------l~----------------~----~~--- 189 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRI-----------------LP----------------D----SF--- 189 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCccc-----------------Cc----------------h----hc---
Confidence 48999999999999999999999999999876421 00 0 00
Q ss_pred ccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCC
Q 012488 131 LKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGA 209 (462)
Q Consensus 131 ~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~ 209 (462)
...+.+.+.+.+++.|++++.++ +.++. .++....+.. ++ .++.+|.||.|.|.
T Consensus 190 -----------~~~~~~~l~~~l~~~gI~v~~~~~v~~i~---~~~~~~~v~~-~~----------~~i~~d~vi~a~G~ 244 (444)
T PRK09564 190 -----------DKEITDVMEEELRENGVELHLNEFVKSLI---GEDKVEGVVT-DK----------GEYEADVVIVATGV 244 (444)
T ss_pred -----------CHHHHHHHHHHHHHCCCEEEcCCEEEEEe---cCCcEEEEEe-CC----------CEEEcCEEEECcCC
Confidence 02245667777788899999887 88885 2222222333 33 46999999999998
Q ss_pred ChH
Q 012488 210 NSR 212 (462)
Q Consensus 210 ~S~ 212 (462)
.+.
T Consensus 245 ~p~ 247 (444)
T PRK09564 245 KPN 247 (444)
T ss_pred CcC
Confidence 653
No 299
>PRK14727 putative mercuric reductase; Provisional
Probab=97.52 E-value=0.0011 Score=67.80 Aligned_cols=97 Identities=19% Similarity=0.236 Sum_probs=69.8
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEeccCc
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQT 130 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (462)
-+|+|||||+.|+-+|..|++.|.+|+|+++... ++ . ..
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~--------l~-----~--~d-------------------------- 227 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARSTL--------LF-----R--ED-------------------------- 227 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC--------CC-----c--ch--------------------------
Confidence 4799999999999999999999999999986421 00 0 00
Q ss_pred ccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCC
Q 012488 131 LKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGA 209 (462)
Q Consensus 131 ~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~ 209 (462)
..+.+.+.+.+++.|++++.+. +..+.. .++.+.+...+ .++.+|.||.|.|.
T Consensus 228 ------------~~~~~~l~~~L~~~GV~i~~~~~V~~i~~---~~~~~~v~~~~-----------g~i~aD~VlvA~G~ 281 (479)
T PRK14727 228 ------------PLLGETLTACFEKEGIEVLNNTQASLVEH---DDNGFVLTTGH-----------GELRAEKLLISTGR 281 (479)
T ss_pred ------------HHHHHHHHHHHHhCCCEEEcCcEEEEEEE---eCCEEEEEEcC-----------CeEEeCEEEEccCC
Confidence 1133456667778899999887 888762 22335554433 35899999999999
Q ss_pred ChHhh
Q 012488 210 NSRVA 214 (462)
Q Consensus 210 ~S~vr 214 (462)
.+...
T Consensus 282 ~pn~~ 286 (479)
T PRK14727 282 HANTH 286 (479)
T ss_pred CCCcc
Confidence 88643
No 300
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.50 E-value=0.00014 Score=73.96 Aligned_cols=35 Identities=49% Similarity=0.747 Sum_probs=32.9
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
+..+|+||||||+|+++|..|++.|++|+|+|+.+
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~ 174 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVVVFDRHP 174 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence 45799999999999999999999999999999986
No 301
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.49 E-value=0.0014 Score=65.48 Aligned_cols=99 Identities=26% Similarity=0.264 Sum_probs=73.3
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEeccC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQ 129 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (462)
..+|+|||+|+.|+.+|..|+++|++|+++|+.+... ..+
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~------------------~~~---------------------- 175 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLG------------------GQL---------------------- 175 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccc------------------hhh----------------------
Confidence 3599999999999999999999999999999876310 000
Q ss_pred cccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEE--EEEeccCCccCCCCceeEEEecEEEec
Q 012488 130 TLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYV--LYYTEYDGTKGGVGEKRTLEVDAVIGA 206 (462)
Q Consensus 130 ~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~--v~~~~~~~~~~~~~~~~~~~adlvI~A 206 (462)
.. ..+.+.+.+..++.|++++.+. +..++. ..+.... +...++ ..+.+|+++.+
T Consensus 176 ----------~~-~~~~~~~~~~l~~~gi~~~~~~~~~~i~~--~~~~~~~~~~~~~~~----------~~~~~d~~~~~ 232 (415)
T COG0446 176 ----------LD-PEVAEELAELLEKYGVELLLGTKVVGVEG--KGNTLVVERVVGIDG----------EEIKADLVIIG 232 (415)
T ss_pred ----------hh-HHHHHHHHHHHHHCCcEEEeCCceEEEEc--ccCcceeeEEEEeCC----------cEEEeeEEEEe
Confidence 00 3366777888888999998887 888873 2221111 344454 78999999999
Q ss_pred CCCCh
Q 012488 207 DGANS 211 (462)
Q Consensus 207 dG~~S 211 (462)
.|...
T Consensus 233 ~g~~p 237 (415)
T COG0446 233 PGERP 237 (415)
T ss_pred ecccc
Confidence 99877
No 302
>PRK14694 putative mercuric reductase; Provisional
Probab=97.47 E-value=0.0013 Score=67.03 Aligned_cols=96 Identities=17% Similarity=0.232 Sum_probs=68.9
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEeccCc
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQT 130 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (462)
-+|+|||||+.|+-+|..|++.|.+|+++++.... + . .
T Consensus 179 ~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l--------~-----~--~--------------------------- 216 (468)
T PRK14694 179 ERLLVIGASVVALELAQAFARLGSRVTVLARSRVL--------S-----Q--E--------------------------- 216 (468)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCC--------C-----C--C---------------------------
Confidence 48999999999999999999999999999863210 0 0 0
Q ss_pred ccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCC
Q 012488 131 LKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGA 209 (462)
Q Consensus 131 ~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~ 209 (462)
...+.+.+.+.+++.|++++.+. +..++. +++.+.+.+.+ .++.+|.||.|.|.
T Consensus 217 -----------~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~---~~~~~~v~~~~-----------~~i~~D~vi~a~G~ 271 (468)
T PRK14694 217 -----------DPAVGEAIEAAFRREGIEVLKQTQASEVDY---NGREFILETNA-----------GTLRAEQLLVATGR 271 (468)
T ss_pred -----------CHHHHHHHHHHHHhCCCEEEeCCEEEEEEE---cCCEEEEEECC-----------CEEEeCEEEEccCC
Confidence 01133456667778899999886 888762 23334444322 36999999999998
Q ss_pred ChHh
Q 012488 210 NSRV 213 (462)
Q Consensus 210 ~S~v 213 (462)
.+..
T Consensus 272 ~pn~ 275 (468)
T PRK14694 272 TPNT 275 (468)
T ss_pred CCCc
Confidence 8764
No 303
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.46 E-value=0.00015 Score=76.63 Aligned_cols=36 Identities=44% Similarity=0.683 Sum_probs=33.4
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 48 NRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 48 ~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
++..+|+||||||+||++|..|++.|++|+|||+.+
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~ 343 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHP 343 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 345789999999999999999999999999999987
No 304
>PLN02529 lysine-specific histone demethylase 1
Probab=97.46 E-value=0.00014 Score=76.89 Aligned_cols=35 Identities=31% Similarity=0.413 Sum_probs=32.8
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
...||+|||||++|+++|..|+++|++|+|+|++.
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~ 193 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRN 193 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCc
Confidence 35699999999999999999999999999999976
No 305
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.45 E-value=0.0017 Score=66.35 Aligned_cols=100 Identities=18% Similarity=0.174 Sum_probs=70.3
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEeccCc
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQT 130 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (462)
-+|+|||||+.|+-+|..|++.|.+|+|+++.... .. ++
T Consensus 181 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l-------------~~--~d-------------------------- 219 (484)
T TIGR01438 181 GKTLVVGASYVALECAGFLAGIGLDVTVMVRSILL-------------RG--FD-------------------------- 219 (484)
T ss_pred CCEEEECCCHHHHHHHHHHHHhCCcEEEEEecccc-------------cc--cC--------------------------
Confidence 47999999999999999999999999999863100 00 00
Q ss_pred ccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCC
Q 012488 131 LKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGA 209 (462)
Q Consensus 131 ~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~ 209 (462)
..+.+.+.+.+++.|++++.+. +..+.. .++.+.+.+.++ ....++.+|.||.|.|.
T Consensus 220 ------------~~~~~~l~~~L~~~gV~i~~~~~v~~v~~---~~~~~~v~~~~~-------~~~~~i~~D~vl~a~G~ 277 (484)
T TIGR01438 220 ------------QDCANKVGEHMEEHGVKFKRQFVPIKVEQ---IEAKVKVTFTDS-------TNGIEEEYDTVLLAIGR 277 (484)
T ss_pred ------------HHHHHHHHHHHHHcCCEEEeCceEEEEEE---cCCeEEEEEecC-------CcceEEEeCEEEEEecC
Confidence 1133455566677899999887 777762 233455666554 11247999999999998
Q ss_pred ChHh
Q 012488 210 NSRV 213 (462)
Q Consensus 210 ~S~v 213 (462)
....
T Consensus 278 ~pn~ 281 (484)
T TIGR01438 278 DACT 281 (484)
T ss_pred CcCC
Confidence 6653
No 306
>PLN02785 Protein HOTHEAD
Probab=97.45 E-value=0.00016 Score=75.20 Aligned_cols=36 Identities=33% Similarity=0.507 Sum_probs=32.9
Q ss_pred CCCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 47 TNRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 47 ~~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
....||+||||||.||+.+|..|++ +.+|+|+|++.
T Consensus 52 ~~~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~ 87 (587)
T PLN02785 52 GDSAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGG 87 (587)
T ss_pred ccccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCC
Confidence 3456999999999999999999999 69999999986
No 307
>PLN02612 phytoene desaturase
Probab=97.45 E-value=0.00018 Score=74.91 Aligned_cols=36 Identities=33% Similarity=0.514 Sum_probs=33.3
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 48 NRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 48 ~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
..+.+|+|||||++||++|+.|+++|++|+|+|++.
T Consensus 91 ~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~ 126 (567)
T PLN02612 91 AKPLKVVIAGAGLAGLSTAKYLADAGHKPILLEARD 126 (567)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCC
Confidence 345799999999999999999999999999999975
No 308
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.45 E-value=0.00015 Score=76.75 Aligned_cols=35 Identities=34% Similarity=0.531 Sum_probs=32.6
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
...+|+||||||+|+++|..|++.|++|+|||+.+
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~ 226 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANE 226 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 34699999999999999999999999999999886
No 309
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.44 E-value=0.00016 Score=76.83 Aligned_cols=35 Identities=31% Similarity=0.452 Sum_probs=32.9
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
...+|+|||||++|+++|+.|++.|++|+|+|++.
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~ 271 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRA 271 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccc
Confidence 45799999999999999999999999999999986
No 310
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.44 E-value=0.0013 Score=67.50 Aligned_cols=97 Identities=14% Similarity=0.217 Sum_probs=70.2
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEeccCc
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQT 130 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (462)
-+|+|||||+.|+-+|..|++.|.+|+|+++.... .. ++
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l-------------~~--~d-------------------------- 221 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPL-------------RG--FD-------------------------- 221 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCccc-------------cc--CC--------------------------
Confidence 37999999999999999999999999999863210 00 00
Q ss_pred ccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCC
Q 012488 131 LKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGA 209 (462)
Q Consensus 131 ~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~ 209 (462)
..+.+.+.+.+++.|++++.+. +..+.. . ++.+.+.+.++ .++.+|.||.|.|.
T Consensus 222 ------------~~~~~~l~~~l~~~GV~i~~~~~v~~v~~--~-~~~~~v~~~~g----------~~i~~D~vl~a~G~ 276 (499)
T PTZ00052 222 ------------RQCSEKVVEYMKEQGTLFLEGVVPINIEK--M-DDKIKVLFSDG----------TTELFDTVLYATGR 276 (499)
T ss_pred ------------HHHHHHHHHHHHHcCCEEEcCCeEEEEEE--c-CCeEEEEECCC----------CEEEcCEEEEeeCC
Confidence 0133455666677899999887 777762 2 23355666665 57899999999998
Q ss_pred ChHh
Q 012488 210 NSRV 213 (462)
Q Consensus 210 ~S~v 213 (462)
.+..
T Consensus 277 ~pn~ 280 (499)
T PTZ00052 277 KPDI 280 (499)
T ss_pred CCCc
Confidence 7754
No 311
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.43 E-value=0.00014 Score=75.08 Aligned_cols=37 Identities=22% Similarity=0.423 Sum_probs=34.4
Q ss_pred CCCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 47 TNRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 47 ~~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
..+++|+||||+|.+|+.+|..|+..|++|+|+|++.
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 3567999999999999999999999999999999995
No 312
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.39 E-value=0.0019 Score=65.38 Aligned_cols=97 Identities=15% Similarity=0.179 Sum_probs=67.2
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEeccC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQ 129 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (462)
.-+|+|||||+.|+-+|..|++.|.+|+++|+.+.. +.. ++.
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~l------------l~~--~d~------------------------ 210 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKL------------LRH--LDE------------------------ 210 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcc------------ccc--cCH------------------------
Confidence 358999999999999999999999999999986421 000 000
Q ss_pred cccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCC
Q 012488 130 TLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADG 208 (462)
Q Consensus 130 ~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG 208 (462)
.+.+.+.+. .+.|++++.+. |.+++. +++.+.+.+.++ .++++|.||.|.|
T Consensus 211 --------------~~~~~l~~~-~~~gI~i~~~~~V~~i~~---~~~~v~v~~~~g----------~~i~~D~vl~a~G 262 (452)
T TIGR03452 211 --------------DISDRFTEI-AKKKWDIRLGRNVTAVEQ---DGDGVTLTLDDG----------STVTADVLLVATG 262 (452)
T ss_pred --------------HHHHHHHHH-HhcCCEEEeCCEEEEEEE---cCCeEEEEEcCC----------CEEEcCEEEEeec
Confidence 011222222 23478998776 888872 233466666554 5899999999999
Q ss_pred CChH
Q 012488 209 ANSR 212 (462)
Q Consensus 209 ~~S~ 212 (462)
....
T Consensus 263 ~~pn 266 (452)
T TIGR03452 263 RVPN 266 (452)
T ss_pred cCcC
Confidence 8765
No 313
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.38 E-value=0.00024 Score=65.83 Aligned_cols=36 Identities=31% Similarity=0.463 Sum_probs=33.6
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCC
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLD 84 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 84 (462)
.+.||+|||+|.|||.+|..|+.+|.+|+|+|+..+
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEge 39 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGE 39 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEccccc
Confidence 467999999999999999999999999999999874
No 314
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=97.37 E-value=0.0025 Score=60.70 Aligned_cols=96 Identities=23% Similarity=0.202 Sum_probs=65.8
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEeccCc
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQT 130 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (462)
.+|+|||+|+.|+-+|..|++.+.+|+++++.+... .
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~----------------~--------------------------- 178 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFR----------------A--------------------------- 178 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhhcCEEEEEEeCcccC----------------c---------------------------
Confidence 489999999999999999999999999999864110 0
Q ss_pred ccCCCeEEeeehHHHHHHHHHHHHHC-CCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCC
Q 012488 131 LKPHEYIGMVRREVLDAYLRERAEKN-GASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADG 208 (462)
Q Consensus 131 ~~~~~~~~~v~r~~l~~~L~~~~~~~-gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG 208 (462)
...+.+.+++. |++++.++ +.++.. ++....+.+.+. .++++.++.+|.||.|.|
T Consensus 179 ---------------~~~~~~~l~~~~gv~~~~~~~v~~i~~---~~~~~~v~~~~~-----~~g~~~~i~~D~vi~a~G 235 (300)
T TIGR01292 179 ---------------EKILLDRLRKNPNIEFLWNSTVKEIVG---DNKVEGVKIKNT-----VTGEEEELKVDGVFIAIG 235 (300)
T ss_pred ---------------CHHHHHHHHhCCCeEEEeccEEEEEEc---cCcEEEEEEEec-----CCCceEEEEccEEEEeeC
Confidence 01123344455 89999876 888872 222233444331 124457899999999999
Q ss_pred CChH
Q 012488 209 ANSR 212 (462)
Q Consensus 209 ~~S~ 212 (462)
....
T Consensus 236 ~~~~ 239 (300)
T TIGR01292 236 HEPN 239 (300)
T ss_pred CCCC
Confidence 6543
No 315
>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]
Probab=97.35 E-value=0.00055 Score=59.36 Aligned_cols=34 Identities=35% Similarity=0.542 Sum_probs=30.2
Q ss_pred CccEEEECCchHHHHHHHHHHHC--CCcEEEEcCCC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKN--GVETFLIERKL 83 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~--g~~v~v~E~~~ 83 (462)
+.||+|||+|-+||++|+..+++ .++|.|+|..-
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SV 111 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSV 111 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeee
Confidence 36999999999999999999865 78999999864
No 316
>PLN02546 glutathione reductase
Probab=97.34 E-value=0.0023 Score=66.26 Aligned_cols=100 Identities=13% Similarity=0.094 Sum_probs=69.9
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEeccC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQ 129 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (462)
.-+|+|||||+.|+-+|..|++.|.+|+|+|+.+... .. +
T Consensus 252 ~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il------------~~--------------------------~-- 291 (558)
T PLN02546 252 PEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVL------------RG--------------------------F-- 291 (558)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccc------------cc--------------------------c--
Confidence 3489999999999999999999999999999765210 00 0
Q ss_pred cccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCC
Q 012488 130 TLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADG 208 (462)
Q Consensus 130 ~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG 208 (462)
-..+.+.+.+..++.|++++.+. +..+.. ..++.+.+...++ ....+|.||.|.|
T Consensus 292 ------------d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~--~~~g~v~v~~~~g----------~~~~~D~Viva~G 347 (558)
T PLN02546 292 ------------DEEVRDFVAEQMSLRGIEFHTEESPQAIIK--SADGSLSLKTNKG----------TVEGFSHVMFATG 347 (558)
T ss_pred ------------CHHHHHHHHHHHHHCCcEEEeCCEEEEEEE--cCCCEEEEEECCe----------EEEecCEEEEeec
Confidence 01233556666778899999887 888762 2233344433322 3445899999999
Q ss_pred CChHh
Q 012488 209 ANSRV 213 (462)
Q Consensus 209 ~~S~v 213 (462)
.....
T Consensus 348 ~~Pnt 352 (558)
T PLN02546 348 RKPNT 352 (558)
T ss_pred cccCC
Confidence 88764
No 317
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.33 E-value=0.0028 Score=64.47 Aligned_cols=102 Identities=21% Similarity=0.205 Sum_probs=70.2
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEeccC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQ 129 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (462)
+-+|+|||||+.|+-+|..|++.|.+|+|+|+.+... .. +
T Consensus 169 ~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l------------~~--~-------------------------- 208 (460)
T PRK06292 169 PKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRIL------------PL--E-------------------------- 208 (460)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcC------------cc--h--------------------------
Confidence 3589999999999999999999999999999875210 00 0
Q ss_pred cccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCC
Q 012488 130 TLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADG 208 (462)
Q Consensus 130 ~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG 208 (462)
+ ..+.+.+.+..++. ++++.+. +.+++. ..+..+++...+ +++.++.+|.||.|.|
T Consensus 209 -----------d-~~~~~~~~~~l~~~-I~i~~~~~v~~i~~--~~~~~v~~~~~~--------~~~~~i~~D~vi~a~G 265 (460)
T PRK06292 209 -----------D-PEVSKQAQKILSKE-FKIKLGAKVTSVEK--SGDEKVEELEKG--------GKTETIEADYVLVATG 265 (460)
T ss_pred -----------h-HHHHHHHHHHHhhc-cEEEcCCEEEEEEE--cCCceEEEEEcC--------CceEEEEeCEEEEccC
Confidence 0 12334555566677 8998877 888862 222234443323 2336799999999999
Q ss_pred CChHhh
Q 012488 209 ANSRVA 214 (462)
Q Consensus 209 ~~S~vr 214 (462)
......
T Consensus 266 ~~p~~~ 271 (460)
T PRK06292 266 RRPNTD 271 (460)
T ss_pred CccCCC
Confidence 876543
No 318
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.31 E-value=0.00026 Score=69.61 Aligned_cols=33 Identities=36% Similarity=0.492 Sum_probs=31.7
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
+||+|||||++|+++|+.|+++|++|+|+|++.
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 599999999999999999999999999999986
No 319
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.31 E-value=0.0006 Score=63.21 Aligned_cols=110 Identities=22% Similarity=0.252 Sum_probs=62.8
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCC--C---------cccccCcccc-ccCCCChhhHhcccceEEEE
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCK--P---------CGGAIPLCMV-GEFDLPLDIIDRKVTKMKMI 118 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~--~---------~g~~i~~~~l-~~~g~~~~~~~~~~~~~~~~ 118 (462)
..|-|||||.||+-+|+.++++|+.|.++|-++.... + |...+-...+ ..-|+...-. +....+.+.
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~TpaH~td~fAELVCSNSlr~~~~~navGlLk~EM-R~lgSlii~ 82 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKGTPAHKTDNFAELVCSNSLRSDALTNAVGLLKAEM-RLLGSLIIE 82 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEEEEcccccCCCcccccchhhheeccccccchhhhhhHHHHHHH-HHhhhHHhh
Confidence 4699999999999999999999999999999872211 1 1111110000 1111111000 001111111
Q ss_pred cCCCceEeccCcccCCCeEEeeehHHHHHHHHHHHHHCC-CEEEcceeEEE
Q 012488 119 SPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRERAEKNG-ASVINGLFMKM 168 (462)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~g-v~i~~~~v~~~ 168 (462)
.-+... -+.+....|+|..|.+.+-+..+.+. ++|+.+.|+.+
T Consensus 83 ~Ad~~~-------VPAGgALAVDR~~Fs~~vT~~l~~hpli~vireEvt~i 126 (439)
T COG1206 83 AADKHR-------VPAGGALAVDRDGFSQAVTEKLENHPLIEVIREEVTEI 126 (439)
T ss_pred hhhhcc-------CCCCceeeecHhHHHHHHHHHHhcCCCEEEEccccccC
Confidence 111111 12222447999999999999988875 78877766544
No 320
>PRK13748 putative mercuric reductase; Provisional
Probab=97.30 E-value=0.0024 Score=66.73 Aligned_cols=96 Identities=18% Similarity=0.215 Sum_probs=68.5
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEeccCc
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQT 130 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (462)
-+|+|||||+.|+-+|..|++.|.+|+|+++... ++ . .+
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~--------l~-----~--~d-------------------------- 309 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARSTL--------FF-----R--ED-------------------------- 309 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCcc--------cc-----c--cC--------------------------
Confidence 4899999999999999999999999999997421 00 0 00
Q ss_pred ccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCC
Q 012488 131 LKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGA 209 (462)
Q Consensus 131 ~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~ 209 (462)
..+.+.+.+.+++.|++++.+. +..+.. +++.+.+...+ .++.+|.||.|.|.
T Consensus 310 ------------~~~~~~l~~~l~~~gI~i~~~~~v~~i~~---~~~~~~v~~~~-----------~~i~~D~vi~a~G~ 363 (561)
T PRK13748 310 ------------PAIGEAVTAAFRAEGIEVLEHTQASQVAH---VDGEFVLTTGH-----------GELRADKLLVATGR 363 (561)
T ss_pred ------------HHHHHHHHHHHHHCCCEEEcCCEEEEEEe---cCCEEEEEecC-----------CeEEeCEEEEccCC
Confidence 0122445556677899999887 888762 23334454433 36999999999998
Q ss_pred ChHh
Q 012488 210 NSRV 213 (462)
Q Consensus 210 ~S~v 213 (462)
....
T Consensus 364 ~pn~ 367 (561)
T PRK13748 364 APNT 367 (561)
T ss_pred CcCC
Confidence 7764
No 321
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.28 E-value=0.003 Score=63.46 Aligned_cols=91 Identities=20% Similarity=0.300 Sum_probs=64.9
Q ss_pred cEEEECCchHHHHHHHHHHH--------------CCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEE
Q 012488 52 RVAVIGGGPAGGAAAETLAK--------------NGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKM 117 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~--------------~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~ 117 (462)
.|+|||||++|+-+|..|+. .+.+|+|+|+.+... .
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll------------~------------------ 224 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL------------G------------------ 224 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc------------c------------------
Confidence 79999999999999999875 367788887654210 0
Q ss_pred EcCCCceEeccCcccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCcee
Q 012488 118 ISPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKR 196 (462)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 196 (462)
. .+ ..+.+.+.+.+++.|++++.++ |..+. . + .|.+.+| .
T Consensus 225 ---~------------------~~-~~~~~~~~~~L~~~gV~v~~~~~v~~v~----~-~--~v~~~~g----------~ 265 (424)
T PTZ00318 225 ---S------------------FD-QALRKYGQRRLRRLGVDIRTKTAVKEVL----D-K--EVVLKDG----------E 265 (424)
T ss_pred ---c------------------CC-HHHHHHHHHHHHHCCCEEEeCCeEEEEe----C-C--EEEECCC----------C
Confidence 0 00 1244556677778899999877 88776 1 1 3556666 6
Q ss_pred EEEecEEEecCCCCh
Q 012488 197 TLEVDAVIGADGANS 211 (462)
Q Consensus 197 ~~~adlvI~AdG~~S 211 (462)
++.+|++|.|.|...
T Consensus 266 ~i~~d~vi~~~G~~~ 280 (424)
T PTZ00318 266 VIPTGLVVWSTGVGP 280 (424)
T ss_pred EEEccEEEEccCCCC
Confidence 899999999999644
No 322
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.28 E-value=0.00037 Score=68.26 Aligned_cols=34 Identities=44% Similarity=0.550 Sum_probs=32.0
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
..+|+|||||++|+.+|..|++.|++|+|+|+.+
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~ 51 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLP 51 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 4699999999999999999999999999999876
No 323
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.28 E-value=0.00029 Score=67.57 Aligned_cols=35 Identities=40% Similarity=0.510 Sum_probs=30.6
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcE--EEEcCCC
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKNGVET--FLIERKL 83 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~g~~v--~v~E~~~ 83 (462)
+.++|+|||||++||++|++|++++-+| +|+|..+
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~ 46 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASP 46 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCC
Confidence 3568999999999999999999998766 5599887
No 324
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.27 E-value=0.00033 Score=71.52 Aligned_cols=35 Identities=43% Similarity=0.624 Sum_probs=32.6
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
...+|+||||||+|+.+|..|+++|++|+|||+.+
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~ 176 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFERED 176 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence 34699999999999999999999999999999886
No 325
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=97.24 E-value=0.00025 Score=73.48 Aligned_cols=32 Identities=28% Similarity=0.440 Sum_probs=30.6
Q ss_pred cEEEECCchHHHHHHHHHHHCC-CcEEEEcCCC
Q 012488 52 RVAVIGGGPAGGAAAETLAKNG-VETFLIERKL 83 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g-~~v~v~E~~~ 83 (462)
|+||||||.||+.+|..|++.| ++|+|+|+++
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~ 33 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGG 33 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCC
Confidence 8999999999999999999998 7999999986
No 326
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.24 E-value=0.00037 Score=69.75 Aligned_cols=34 Identities=47% Similarity=0.651 Sum_probs=32.3
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKLD 84 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 84 (462)
.+|+|||||||||++|..|++.|++|+|+|+.+.
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~ 157 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVAL 157 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCC
Confidence 5899999999999999999999999999999873
No 327
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.21 E-value=0.0004 Score=72.43 Aligned_cols=34 Identities=47% Similarity=0.597 Sum_probs=32.1
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
..+|+||||||+||++|..|++.|++|+|+|+.+
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~ 170 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGP 170 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 4589999999999999999999999999999886
No 328
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.21 E-value=0.003 Score=65.10 Aligned_cols=95 Identities=23% Similarity=0.266 Sum_probs=66.4
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEeccCc
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQT 130 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (462)
.+|+|||||+.|+-+|..|++.|.+|+|+|+.+.. ..
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l------------------~~------------------------- 389 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADEL------------------KA------------------------- 389 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcC------------------Ch-------------------------
Confidence 48999999999999999999999999999865410 00
Q ss_pred ccCCCeEEeeehHHHHHHHHHHHHH-CCCEEEcce-eEEEEecCCCCCCE-EEEEeccCCccCCCCceeEEEecEEEecC
Q 012488 131 LKPHEYIGMVRREVLDAYLRERAEK-NGASVINGL-FMKMDLPRNFEQPY-VLYYTEYDGTKGGVGEKRTLEVDAVIGAD 207 (462)
Q Consensus 131 ~~~~~~~~~v~r~~l~~~L~~~~~~-~gv~i~~~~-v~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~adlvI~Ad 207 (462)
...+.+.+++ .|++++.++ +.++. .+++.+ .|.+.++ .+++..++.+|.||.|.
T Consensus 390 ---------------~~~l~~~l~~~~gV~i~~~~~v~~i~---~~~~~v~~v~~~~~-----~~~~~~~i~~D~vi~a~ 446 (515)
T TIGR03140 390 ---------------DKVLQDKLKSLPNVDILTSAQTTEIV---GDGDKVTGIRYQDR-----NSGEEKQLDLDGVFVQI 446 (515)
T ss_pred ---------------hHHHHHHHhcCCCCEEEECCeeEEEE---cCCCEEEEEEEEEC-----CCCcEEEEEcCEEEEEe
Confidence 0112333443 589999887 87776 222333 3666654 12445689999999999
Q ss_pred CCCh
Q 012488 208 GANS 211 (462)
Q Consensus 208 G~~S 211 (462)
|...
T Consensus 447 G~~P 450 (515)
T TIGR03140 447 GLVP 450 (515)
T ss_pred CCcC
Confidence 9655
No 329
>PRK10262 thioredoxin reductase; Provisional
Probab=97.15 E-value=0.004 Score=60.07 Aligned_cols=102 Identities=20% Similarity=0.189 Sum_probs=68.5
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEeccCc
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQT 130 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (462)
-+|+|||+|..|+-+|..|++.|.+|+++++.+... . +
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~----------------~-~------------------------- 184 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR----------------A-E------------------------- 184 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCccC----------------C-C-------------------------
Confidence 489999999999999999999999999999864210 0 0
Q ss_pred ccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCC
Q 012488 131 LKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGA 209 (462)
Q Consensus 131 ~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~ 209 (462)
..+.+.+.+..++.|++++.+. +.++. .+..+...|.+.++. ..++..++.+|.||.|.|.
T Consensus 185 ------------~~~~~~~~~~l~~~gV~i~~~~~v~~v~--~~~~~~~~v~~~~~~----~~~~~~~i~~D~vv~a~G~ 246 (321)
T PRK10262 185 ------------KILIKRLMDKVENGNIILHTNRTLEEVT--GDQMGVTGVRLRDTQ----NSDNIESLDVAGLFVAIGH 246 (321)
T ss_pred ------------HHHHHHHHhhccCCCeEEEeCCEEEEEE--cCCccEEEEEEEEcC----CCCeEEEEECCEEEEEeCC
Confidence 0122334555567788998876 88886 222222235555431 0123468999999999996
Q ss_pred ChH
Q 012488 210 NSR 212 (462)
Q Consensus 210 ~S~ 212 (462)
...
T Consensus 247 ~p~ 249 (321)
T PRK10262 247 SPN 249 (321)
T ss_pred ccC
Confidence 543
No 330
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=97.11 E-value=0.00059 Score=64.50 Aligned_cols=34 Identities=32% Similarity=0.477 Sum_probs=30.9
Q ss_pred CccEEEECCchHHHHHHHHHHHC--CCcEEEEcCCC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKN--GVETFLIERKL 83 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~--g~~v~v~E~~~ 83 (462)
...|+|||+||||..+|..|.++ +++|.|+|+.+
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~P 55 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLP 55 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCC
Confidence 34899999999999999999885 78999999998
No 331
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.11 E-value=0.00042 Score=64.74 Aligned_cols=34 Identities=32% Similarity=0.396 Sum_probs=30.8
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
.+.+|+|||+|++||++|+.|+++ ++|++||.+.
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~ 40 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADR 40 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc-cceEEEeccc
Confidence 356999999999999999999877 7999999987
No 332
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.10 E-value=0.021 Score=55.25 Aligned_cols=60 Identities=20% Similarity=0.220 Sum_probs=46.6
Q ss_pred eeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCE-EEEEeccCCccCCCCceeEEEecEEEecCCCChH
Q 012488 139 MVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPY-VLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSR 212 (462)
Q Consensus 139 ~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S~ 212 (462)
.++-..+...|.+.+++.|++++.++ |.++.. .++.+ .|.+.+ .+++||.||.|+|.++.
T Consensus 133 ~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~---~~~~~~~v~~~~-----------g~~~a~~vV~a~G~~~~ 194 (337)
T TIGR02352 133 HVDPRALLKALEKALEKLGVEIIEHTEVQHIEI---RGEKVTAIVTPS-----------GDVQADQVVLAAGAWAG 194 (337)
T ss_pred eEChHHHHHHHHHHHHHcCCEEEccceEEEEEe---eCCEEEEEEcCC-----------CEEECCEEEEcCChhhh
Confidence 56778899999999999999999987 988872 23333 344333 37899999999999886
No 333
>PRK13984 putative oxidoreductase; Provisional
Probab=97.06 E-value=0.00074 Score=71.14 Aligned_cols=35 Identities=43% Similarity=0.547 Sum_probs=32.7
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
...+|+|||+||+|+++|..|++.|++|+|||+.+
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~ 316 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLS 316 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence 45689999999999999999999999999999886
No 334
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.05 E-value=0.00086 Score=65.43 Aligned_cols=36 Identities=36% Similarity=0.597 Sum_probs=31.1
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCC-CcEEEEcCCC
Q 012488 48 NRNLRVAVIGGGPAGGAAAETLAKNG-VETFLIERKL 83 (462)
Q Consensus 48 ~~~~dVvIVGgG~aGl~~A~~L~~~g-~~v~v~E~~~ 83 (462)
....+|||||||.|||++|..|...| .+|+|+|-.+
T Consensus 19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~d 55 (498)
T KOG0685|consen 19 RGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASD 55 (498)
T ss_pred cCCceEEEECCchHHHHHHHHHHHhCCceEEEEEecc
Confidence 33468999999999999999999665 6899999877
No 335
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.05 E-value=0.0012 Score=64.08 Aligned_cols=139 Identities=23% Similarity=0.238 Sum_probs=69.4
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCC--cEEEEcCCCCCCCCcc-----cccCccccccC-CCChhhHhcccceEEEEc
Q 012488 48 NRNLRVAVIGGGPAGGAAAETLAKNGV--ETFLIERKLDNCKPCG-----GAIPLCMVGEF-DLPLDIIDRKVTKMKMIS 119 (462)
Q Consensus 48 ~~~~dVvIVGgG~aGl~~A~~L~~~g~--~v~v~E~~~~~~~~~g-----~~i~~~~l~~~-g~~~~~~~~~~~~~~~~~ 119 (462)
.....|+|||||.++.-.+..|.+.+- +|+++=|++......- +.+.++..+.| +++++....-+.
T Consensus 188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~------ 261 (341)
T PF13434_consen 188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSLPDEERRELLR------ 261 (341)
T ss_dssp ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS-HHHHHHHHH------
T ss_pred cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcCCHHHHHHHHH------
Confidence 345799999999999999999998864 8999988873211111 11122211111 122111110000
Q ss_pred CCCceEeccCcccCCCeEEeeehHHHHHH----HHHHHHHC-CCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCC
Q 012488 120 PSNVAVDIGQTLKPHEYIGMVRREVLDAY----LRERAEKN-GASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVG 193 (462)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~v~r~~l~~~----L~~~~~~~-gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 193 (462)
....-.+. .|+...++++ ..+.+... .++++.++ |.+++. .+++.+.+++.+. .++
T Consensus 262 ----------~~~~~ny~-~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~--~~~~~~~l~~~~~-----~~~ 323 (341)
T PF13434_consen 262 ----------EQRHTNYG-GIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQ--DGDGGVRLTLRHR-----QTG 323 (341)
T ss_dssp ----------HTGGGTSS-EB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEE--ES-SSEEEEEEET-----TT-
T ss_pred ----------HhHhhcCC-CCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEE--CCCCEEEEEEEEC-----CCC
Confidence 00000000 2343333222 22223222 37888877 998884 3445799999885 356
Q ss_pred ceeEEEecEEEecCCCC
Q 012488 194 EKRTLEVDAVIGADGAN 210 (462)
Q Consensus 194 ~~~~~~adlvI~AdG~~ 210 (462)
+..++++|.||.|||..
T Consensus 324 ~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 324 EEETLEVDAVILATGYR 340 (341)
T ss_dssp -EEEEEESEEEE---EE
T ss_pred CeEEEecCEEEEcCCcc
Confidence 77899999999999953
No 336
>PLN03000 amine oxidase
Probab=97.04 E-value=0.00074 Score=72.06 Aligned_cols=35 Identities=29% Similarity=0.446 Sum_probs=32.9
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
...+|+|||||++||.+|..|++.|++|+|+|++.
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~ 217 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRK 217 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccC
Confidence 35799999999999999999999999999999987
No 337
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=96.99 E-value=0.0046 Score=60.56 Aligned_cols=57 Identities=21% Similarity=0.302 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCCChH-hhhh
Q 012488 144 VLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSR-VAKS 216 (462)
Q Consensus 144 ~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S~-vr~~ 216 (462)
.+.+...+..++.||+++.++ |++++ ++ .|++.+++ .++.++.+|-|.|.... +-+.
T Consensus 210 ~l~~~a~~~L~~~GV~v~l~~~Vt~v~----~~---~v~~~~g~---------~~I~~~tvvWaaGv~a~~~~~~ 268 (405)
T COG1252 210 KLSKYAERALEKLGVEVLLGTPVTEVT----PD---GVTLKDGE---------EEIPADTVVWAAGVRASPLLKD 268 (405)
T ss_pred HHHHHHHHHHHHCCCEEEcCCceEEEC----CC---cEEEccCC---------eeEecCEEEEcCCCcCChhhhh
Confidence 355667777788999999998 99887 22 24555551 26999999999998553 4443
No 338
>PLN02976 amine oxidase
Probab=96.98 E-value=0.00083 Score=74.42 Aligned_cols=36 Identities=31% Similarity=0.544 Sum_probs=33.2
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 48 NRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 48 ~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
....+|+|||||++|+++|+.|++.|++|+|||+++
T Consensus 691 ~~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~ 726 (1713)
T PLN02976 691 VDRKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARS 726 (1713)
T ss_pred CCCCcEEEECchHHHHHHHHHHHHCCCcEEEEeecc
Confidence 345899999999999999999999999999999975
No 339
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]
Probab=96.94 E-value=0.0011 Score=70.44 Aligned_cols=42 Identities=43% Similarity=0.555 Sum_probs=36.4
Q ss_pred CCCCCCCCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 42 TSPKLTNRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 42 ~~~~~~~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
..|+...+-.+|.|||.|||||++|-.|-|.|+.|+||||..
T Consensus 1777 p~pp~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~d 1818 (2142)
T KOG0399|consen 1777 PCPPAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSD 1818 (2142)
T ss_pred cCCcccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecC
Confidence 344444556799999999999999999999999999999986
No 340
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=96.94 E-value=0.01 Score=62.46 Aligned_cols=110 Identities=15% Similarity=0.126 Sum_probs=69.5
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEeccC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQ 129 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (462)
.-+|+|||||+.|+-+|..|++.|.+|+|+|+.+... .. +.
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll------------~~--~d------------------------- 352 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLL------------PL--LD------------------------- 352 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCccc------------cc--CC-------------------------
Confidence 3489999999999999999999999999999875210 00 00
Q ss_pred cccCCCeEEeeehHHHHHHHHHHH-HHCCCEEEcce-eEEEEecCCCC-CCEEEEEeccCCc-----cCCCCceeEEEec
Q 012488 130 TLKPHEYIGMVRREVLDAYLRERA-EKNGASVINGL-FMKMDLPRNFE-QPYVLYYTEYDGT-----KGGVGEKRTLEVD 201 (462)
Q Consensus 130 ~~~~~~~~~~v~r~~l~~~L~~~~-~~~gv~i~~~~-v~~~~~~~~~~-~~~~v~~~~~~~~-----~~~~~~~~~~~ad 201 (462)
..+.+.+.+.. ++.|++++.+. |..+.. .++ ..+.+.+.+.... .....+..++++|
T Consensus 353 -------------~eis~~l~~~ll~~~GV~I~~~~~V~~I~~--~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD 417 (659)
T PTZ00153 353 -------------ADVAKYFERVFLKSKPVRVHLNTLIEYVRA--GKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVD 417 (659)
T ss_pred -------------HHHHHHHHHHHhhcCCcEEEcCCEEEEEEe--cCCceEEEEEEeccccccccccccccccceEEEcC
Confidence 01223333332 45789999887 888872 222 1255554321000 0000122479999
Q ss_pred EEEecCCCChHh
Q 012488 202 AVIGADGANSRV 213 (462)
Q Consensus 202 lvI~AdG~~S~v 213 (462)
.||.|.|....+
T Consensus 418 ~VlvAtGr~Pnt 429 (659)
T PTZ00153 418 SCLVATGRKPNT 429 (659)
T ss_pred EEEEEECcccCC
Confidence 999999987654
No 341
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=96.87 E-value=0.014 Score=59.02 Aligned_cols=33 Identities=33% Similarity=0.441 Sum_probs=30.8
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
-+|+|||||..|+=+|..|.+.|.+|+|++++.
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~ 305 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRT 305 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecC
Confidence 489999999999999999999999999999864
No 342
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.85 E-value=0.01 Score=61.35 Aligned_cols=95 Identities=25% Similarity=0.243 Sum_probs=66.0
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEeccCc
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQT 130 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (462)
-+|+|||||..|+-+|..|+..+.+|+|+++.+... . .
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~----------------~-~------------------------- 389 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELK----------------A-D------------------------- 389 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcccc----------------c-c-------------------------
Confidence 489999999999999999999999999998764210 0 0
Q ss_pred ccCCCeEEeeehHHHHHHHHHHHHH-CCCEEEcce-eEEEEecCCCCCCE-EEEEeccCCccCCCCceeEEEecEEEecC
Q 012488 131 LKPHEYIGMVRREVLDAYLRERAEK-NGASVINGL-FMKMDLPRNFEQPY-VLYYTEYDGTKGGVGEKRTLEVDAVIGAD 207 (462)
Q Consensus 131 ~~~~~~~~~v~r~~l~~~L~~~~~~-~gv~i~~~~-v~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~adlvI~Ad 207 (462)
+.|.+...+ .|++++.++ +.++.. +++.+ .+++.+. .++++.++.+|.|+.|.
T Consensus 390 ----------------~~l~~~l~~~~gI~i~~~~~v~~i~~---~~g~v~~v~~~~~-----~~g~~~~i~~D~v~~~~ 445 (517)
T PRK15317 390 ----------------QVLQDKLRSLPNVTIITNAQTTEVTG---DGDKVTGLTYKDR-----TTGEEHHLELEGVFVQI 445 (517)
T ss_pred ----------------HHHHHHHhcCCCcEEEECcEEEEEEc---CCCcEEEEEEEEC-----CCCcEEEEEcCEEEEeE
Confidence 012223333 489999887 888872 22333 3566553 12455689999999999
Q ss_pred CCCh
Q 012488 208 GANS 211 (462)
Q Consensus 208 G~~S 211 (462)
|...
T Consensus 446 G~~p 449 (517)
T PRK15317 446 GLVP 449 (517)
T ss_pred CCcc
Confidence 9754
No 343
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.73 E-value=0.018 Score=56.28 Aligned_cols=33 Identities=30% Similarity=0.377 Sum_probs=29.7
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCc-EEEEcCCC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVE-TFLIERKL 83 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~-v~v~E~~~ 83 (462)
-.|+|||+|+.|+-+|..|.+.|.+ |+|+++..
T Consensus 173 ~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~ 206 (352)
T PRK12770 173 KKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT 206 (352)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc
Confidence 4799999999999999999999997 99998753
No 344
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=96.61 E-value=0.01 Score=55.08 Aligned_cols=37 Identities=24% Similarity=0.454 Sum_probs=31.2
Q ss_pred CCCCccEEEECCchHHHHHHHHHHHC-C-CcEEEEcCCC
Q 012488 47 TNRNLRVAVIGGGPAGGAAAETLAKN-G-VETFLIERKL 83 (462)
Q Consensus 47 ~~~~~dVvIVGgG~aGl~~A~~L~~~-g-~~v~v~E~~~ 83 (462)
...+++|+|||||-+|+..|..+.++ | -+|.|+|-..
T Consensus 36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE 74 (446)
T ss_pred cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence 45679999999999999999999876 3 3788998765
No 345
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=96.60 E-value=0.0025 Score=61.78 Aligned_cols=64 Identities=11% Similarity=0.125 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCCChHhhhhhcC
Q 012488 144 VLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSRVAKSINA 219 (462)
Q Consensus 144 ~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S~vr~~l~~ 219 (462)
.+-..+.+.+++.|.+|+... |.+|.. +.+-.+.|.+.|| ++++++.||--.+.+-+.-+.+..
T Consensus 265 avs~aia~~~~~~GaeI~tka~Vq~Ill--d~gka~GV~L~dG----------~ev~sk~VvSNAt~~~Tf~kLlp~ 329 (561)
T KOG4254|consen 265 AVSFAIAEGAKRAGAEIFTKATVQSILL--DSGKAVGVRLADG----------TEVRSKIVVSNATPWDTFEKLLPG 329 (561)
T ss_pred HHHHHHHHHHHhccceeeehhhhhheec--cCCeEEEEEecCC----------cEEEeeeeecCCchHHHHHHhCCC
Confidence 344567888899999999887 998884 3333466888898 899999999999888887766643
No 346
>PRK12831 putative oxidoreductase; Provisional
Probab=96.59 E-value=0.031 Score=56.77 Aligned_cols=33 Identities=36% Similarity=0.529 Sum_probs=30.7
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
-+|+|||||..|+-+|..|.+.|.+|+|++++.
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~ 314 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS 314 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC
Confidence 489999999999999999999999999998764
No 347
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=96.59 E-value=0.019 Score=54.71 Aligned_cols=107 Identities=21% Similarity=0.225 Sum_probs=76.8
Q ss_pred CCCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEe
Q 012488 47 TNRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVD 126 (462)
Q Consensus 47 ~~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 126 (462)
...+-..+|||||..||-++.-..+.|-+|+++|--+.. ++ .+ +.
T Consensus 208 ~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i---~~-~m----------D~--------------------- 252 (506)
T KOG1335|consen 208 KEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQI---GG-VM----------DG--------------------- 252 (506)
T ss_pred hhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhh---cc-cc----------CH---------------------
Confidence 344568999999999999999999999999999965421 11 00 00
Q ss_pred ccCcccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEe
Q 012488 127 IGQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIG 205 (462)
Q Consensus 127 ~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~ 205 (462)
++.....+-++..|+++..++ |.... ...++.+.+.+.+. .+++..+++||++..
T Consensus 253 -----------------Eisk~~qr~L~kQgikF~l~tkv~~a~--~~~dg~v~i~ve~a-----k~~k~~tle~DvlLV 308 (506)
T KOG1335|consen 253 -----------------EISKAFQRVLQKQGIKFKLGTKVTSAT--RNGDGPVEIEVENA-----KTGKKETLECDVLLV 308 (506)
T ss_pred -----------------HHHHHHHHHHHhcCceeEeccEEEEee--ccCCCceEEEEEec-----CCCceeEEEeeEEEE
Confidence 112222233345689999888 88887 34455788888775 467789999999999
Q ss_pred cCCCChH
Q 012488 206 ADGANSR 212 (462)
Q Consensus 206 AdG~~S~ 212 (462)
|.|++.-
T Consensus 309 siGRrP~ 315 (506)
T KOG1335|consen 309 SIGRRPF 315 (506)
T ss_pred EccCccc
Confidence 9997664
No 348
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.45 E-value=0.036 Score=56.37 Aligned_cols=34 Identities=35% Similarity=0.460 Sum_probs=30.5
Q ss_pred CccEEEECCchHHHHHHHHHHHCCC-cEEEEcCCC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGV-ETFLIERKL 83 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~-~v~v~E~~~ 83 (462)
.-+|+|||||..|+-+|..|.+.|. +|++++++.
T Consensus 273 g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~ 307 (457)
T PRK11749 273 GKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG 307 (457)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 3489999999999999999999998 899998764
No 349
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=96.44 E-value=0.025 Score=55.59 Aligned_cols=100 Identities=17% Similarity=0.191 Sum_probs=73.7
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEeccC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQ 129 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (462)
.-.|++||+|..|+-.|..|.-.+.+|+++++.+... ..+ +.
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~------------------~~l----------f~---------- 254 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEPWLL------------------PRL----------FG---------- 254 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhcCceEEEEccCccch------------------hhh----------hh----------
Confidence 3469999999999999999999999999999876210 000 00
Q ss_pred cccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCC-CCCEEEEEeccCCccCCCCceeEEEecEEEecC
Q 012488 130 TLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNF-EQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGAD 207 (462)
Q Consensus 130 ~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~Ad 207 (462)
..+.+...+..++.|++++.++ +.+++. .+ +....|.+.++ .++.||+||.+.
T Consensus 255 -------------~~i~~~~~~y~e~kgVk~~~~t~~s~l~~--~~~Gev~~V~l~dg----------~~l~adlvv~Gi 309 (478)
T KOG1336|consen 255 -------------PSIGQFYEDYYENKGVKFYLGTVVSSLEG--NSDGEVSEVKLKDG----------KTLEADLVVVGI 309 (478)
T ss_pred -------------HHHHHHHHHHHHhcCeEEEEecceeeccc--CCCCcEEEEEeccC----------CEeccCeEEEee
Confidence 1133444555667899999998 777763 33 33456788887 899999999999
Q ss_pred CCChH
Q 012488 208 GANSR 212 (462)
Q Consensus 208 G~~S~ 212 (462)
|..+.
T Consensus 310 G~~p~ 314 (478)
T KOG1336|consen 310 GIKPN 314 (478)
T ss_pred ccccc
Confidence 98764
No 350
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=96.42 E-value=0.51 Score=46.98 Aligned_cols=59 Identities=20% Similarity=0.117 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCCChHhh
Q 012488 143 EVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSRVA 214 (462)
Q Consensus 143 ~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S~vr 214 (462)
..+...+...+...|.+|+.++ |++|+. +++.+.|.+.++ .+++||.||.|.......+
T Consensus 209 g~~~~~~~~~~~~~g~~i~l~~~V~~I~~---~~~~v~v~~~~g----------~~~~ad~VI~a~p~~~l~~ 268 (450)
T PF01593_consen 209 GGLSLALALAAEELGGEIRLNTPVTRIER---EDGGVTVTTEDG----------ETIEADAVISAVPPSVLKN 268 (450)
T ss_dssp TTTHHHHHHHHHHHGGGEESSEEEEEEEE---ESSEEEEEETTS----------SEEEESEEEE-S-HHHHHT
T ss_pred cchhHHHHHHHhhcCceeecCCcceeccc---cccccccccccc----------eEEecceeeecCchhhhhh
Confidence 3445555666666677999998 999984 346789999887 6999999999987655443
No 351
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=96.42 E-value=0.04 Score=54.15 Aligned_cols=50 Identities=24% Similarity=0.282 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCCCh
Q 012488 145 LDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANS 211 (462)
Q Consensus 145 l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S 211 (462)
+.+.+.+.+++.|++++.++ +..+. ++ .+.+.+| .++.+|.||.|.|...
T Consensus 193 ~~~~~~~~l~~~gV~v~~~~~v~~i~----~~---~v~~~~g----------~~i~~D~vi~a~G~~p 243 (364)
T TIGR03169 193 VRRLVLRLLARRGIEVHEGAPVTRGP----DG---ALILADG----------RTLPADAILWATGARA 243 (364)
T ss_pred HHHHHHHHHHHCCCEEEeCCeeEEEc----CC---eEEeCCC----------CEEecCEEEEccCCCh
Confidence 34555667778899999887 77665 11 3555565 6899999999999654
No 352
>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]
Probab=96.39 E-value=0.0032 Score=64.08 Aligned_cols=36 Identities=31% Similarity=0.460 Sum_probs=33.3
Q ss_pred CCCccEEEECCchHHHHHHHHHHHC-CCcEEEEcCCC
Q 012488 48 NRNLRVAVIGGGPAGGAAAETLAKN-GVETFLIERKL 83 (462)
Q Consensus 48 ~~~~dVvIVGgG~aGl~~A~~L~~~-g~~v~v~E~~~ 83 (462)
..+||.||||||-|||.+|..|++. .++|+|+|++.
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg 91 (623)
T KOG1238|consen 55 DSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGG 91 (623)
T ss_pred ccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCC
Confidence 4579999999999999999999986 79999999987
No 353
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=96.24 E-value=0.0059 Score=52.13 Aligned_cols=32 Identities=47% Similarity=0.554 Sum_probs=30.5
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 52 RVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
+|.|+|||..|.++|..|+++|++|.++.+++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 58999999999999999999999999999975
No 354
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.21 E-value=0.035 Score=54.32 Aligned_cols=66 Identities=18% Similarity=0.158 Sum_probs=49.6
Q ss_pred ehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCCCh--------
Q 012488 141 RREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANS-------- 211 (462)
Q Consensus 141 ~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S-------- 211 (462)
+...+.+.|...+++.||+|+.++ |.+++ ++.+.+.+..+ ...++||.||.|+|..|
T Consensus 84 ~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~-----~~~~~v~~~~~---------~~~~~a~~vIlAtGG~s~p~~Gs~g 149 (376)
T TIGR03862 84 KAAPLLRAWLKRLAEQGVQFHTRHRWIGWQ-----GGTLRFETPDG---------QSTIEADAVVLALGGASWSQLGSDG 149 (376)
T ss_pred CHHHHHHHHHHHHHHCCCEEEeCCEEEEEe-----CCcEEEEECCC---------ceEEecCEEEEcCCCccccccCCCc
Confidence 456788999999999999999988 98883 12366665432 14699999999999977
Q ss_pred ---HhhhhhcCC
Q 012488 212 ---RVAKSINAG 220 (462)
Q Consensus 212 ---~vr~~l~~~ 220 (462)
.+.+++|..
T Consensus 150 ~gy~la~~lGh~ 161 (376)
T TIGR03862 150 AWQQVLDQRGVS 161 (376)
T ss_pred HHHHHHHHCCCc
Confidence 455666654
No 355
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.05 E-value=0.043 Score=61.14 Aligned_cols=99 Identities=19% Similarity=0.185 Sum_probs=68.0
Q ss_pred ccEEEECCchHHHHHHHHHHHCCC-cEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEeccC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGV-ETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQ 129 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~-~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (462)
-+|+|||+|+.|+-+|..|++.|. .|+|+|..+.. ..
T Consensus 318 k~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~------------------~~------------------------ 355 (985)
T TIGR01372 318 KRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV------------------SP------------------------ 355 (985)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch------------------hH------------------------
Confidence 489999999999999999999996 57888865310 00
Q ss_pred cccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCC
Q 012488 130 TLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADG 208 (462)
Q Consensus 130 ~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG 208 (462)
.+.+.+++.|++++.++ +..+. .++....|.+... .+++.++.||.|+.+.|
T Consensus 356 ------------------~l~~~L~~~GV~i~~~~~v~~i~---g~~~v~~V~l~~~------~g~~~~i~~D~V~va~G 408 (985)
T TIGR01372 356 ------------------EARAEARELGIEVLTGHVVAATE---GGKRVSGVAVARN------GGAGQRLEADALAVSGG 408 (985)
T ss_pred ------------------HHHHHHHHcCCEEEcCCeEEEEe---cCCcEEEEEEEec------CCceEEEECCEEEEcCC
Confidence 03345667899999887 77776 2222223444421 13347899999999999
Q ss_pred CChH--hhhhhc
Q 012488 209 ANSR--VAKSIN 218 (462)
Q Consensus 209 ~~S~--vr~~l~ 218 (462)
.... +.+.++
T Consensus 409 ~~Pnt~L~~~lg 420 (985)
T TIGR01372 409 WTPVVHLFSQRG 420 (985)
T ss_pred cCchhHHHHhcC
Confidence 8765 344444
No 356
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.93 E-value=0.011 Score=51.79 Aligned_cols=32 Identities=41% Similarity=0.601 Sum_probs=28.4
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 52 RVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
.|.|||+|..|...|..++++|++|+++|.++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 48999999999999999999999999999876
No 357
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=95.91 E-value=0.012 Score=56.60 Aligned_cols=36 Identities=28% Similarity=0.519 Sum_probs=32.5
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 48 NRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 48 ~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
...++|+|||+|-.|.++|..|++.|++|+++.|+.
T Consensus 3 ~~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 3 SETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred CcCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 445689999999999999999999999999999865
No 358
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.82 E-value=0.011 Score=51.99 Aligned_cols=33 Identities=30% Similarity=0.414 Sum_probs=27.2
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
++|.|+|.|-.||.+|..|+++|++|+.+|.++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 479999999999999999999999999999987
No 359
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.81 E-value=0.011 Score=53.63 Aligned_cols=33 Identities=30% Similarity=0.639 Sum_probs=31.6
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
++++|||+|..|..+|..|.+.|++|+++|+++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 379999999999999999999999999999998
No 360
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=95.79 E-value=0.1 Score=56.53 Aligned_cols=33 Identities=33% Similarity=0.508 Sum_probs=30.3
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCc-EEEEcCCC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVE-TFLIERKL 83 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~-v~v~E~~~ 83 (462)
-+|+|||||..|+-+|..+.+.|.+ |+|+++++
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS 604 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 4899999999999999999999997 99998764
No 361
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=95.78 E-value=0.091 Score=54.76 Aligned_cols=33 Identities=33% Similarity=0.411 Sum_probs=30.9
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
-+|+|||||+.|+-+|..|++.|.+|+++++.+
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~ 176 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP 176 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence 589999999999999999999999999999864
No 362
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=95.75 E-value=0.034 Score=57.52 Aligned_cols=104 Identities=22% Similarity=0.289 Sum_probs=74.5
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCceEeccCcc
Q 012488 52 RVAVIGGGPAGGAAAETLAKNGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVDIGQTL 131 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (462)
..+|||||.-|+=+|..|...|.+|+|++-.+. +.++.++
T Consensus 147 ~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~----------------------lMerQLD------------------ 186 (793)
T COG1251 147 KAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPT----------------------LMERQLD------------------ 186 (793)
T ss_pred CcEEEccchhhhHHHHHHHhCCCceEEEeecch----------------------HHHHhhh------------------
Confidence 479999999999999999999999999985431 0111000
Q ss_pred cCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCCC
Q 012488 132 KPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGAN 210 (462)
Q Consensus 132 ~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~ 210 (462)
+. =...|+...++.|++++.++ ...+. .++....+.+.|| ..+.+|+||-|+|.+
T Consensus 187 -~~----------ag~lL~~~le~~Gi~~~l~~~t~ei~---g~~~~~~vr~~DG----------~~i~ad~VV~a~GIr 242 (793)
T COG1251 187 -RT----------AGRLLRRKLEDLGIKVLLEKNTEEIV---GEDKVEGVRFADG----------TEIPADLVVMAVGIR 242 (793)
T ss_pred -hH----------HHHHHHHHHHhhcceeecccchhhhh---cCcceeeEeecCC----------CcccceeEEEecccc
Confidence 00 12456667778899998877 55444 2444567888898 899999999999986
Q ss_pred hH--hhhhhcC
Q 012488 211 SR--VAKSINA 219 (462)
Q Consensus 211 S~--vr~~l~~ 219 (462)
.. +.+..++
T Consensus 243 Pn~ela~~aGl 253 (793)
T COG1251 243 PNDELAKEAGL 253 (793)
T ss_pred cccHhHHhcCc
Confidence 64 5555554
No 363
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=95.59 E-value=0.14 Score=52.19 Aligned_cols=32 Identities=28% Similarity=0.368 Sum_probs=26.7
Q ss_pred ccEEEECCchHHHHHHHHHHHCCC-cEEEEcCC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGV-ETFLIERK 82 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~-~v~v~E~~ 82 (462)
-.|+|||||..|+-+|..+.+.|. +|++++..
T Consensus 282 k~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~ 314 (471)
T PRK12810 282 KHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIM 314 (471)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCeEEEcccc
Confidence 479999999999999998888886 67765543
No 364
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=95.58 E-value=0.015 Score=57.78 Aligned_cols=36 Identities=22% Similarity=0.425 Sum_probs=29.0
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 48 NRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 48 ~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
+.+|||||+|-|..-+.+|.+|++.|.+|+.+|+++
T Consensus 2 ~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~ 37 (438)
T PF00996_consen 2 DEEYDVIILGTGLTESILAAALSRSGKKVLHIDRND 37 (438)
T ss_dssp -SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSS
T ss_pred CccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCC
Confidence 457999999999999999999999999999999998
No 365
>PLN02612 phytoene desaturase
Probab=95.38 E-value=2.5 Score=44.20 Aligned_cols=61 Identities=16% Similarity=0.099 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCC-EEEEEeccCCccCCCCceeEEEecEEEecCCCChHhhhhh
Q 012488 144 VLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQP-YVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSRVAKSI 217 (462)
Q Consensus 144 ~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S~vr~~l 217 (462)
.+.+-|.+..++.|++|+.++ |.+|.. ++++. +.+.+.+| .++++|.||.|... ..+++.+
T Consensus 309 ~l~~~l~~~l~~~G~~I~l~~~V~~I~~--~~~g~v~~v~~~~G----------~~~~ad~VI~a~p~-~~l~~Ll 371 (567)
T PLN02612 309 RLCMPIVDHFQSLGGEVRLNSRIKKIEL--NDDGTVKHFLLTNG----------SVVEGDVYVSATPV-DILKLLL 371 (567)
T ss_pred HHHHHHHHHHHhcCCEEEeCCeeeEEEE--CCCCcEEEEEECCC----------cEEECCEEEECCCH-HHHHHhC
Confidence 455677777778899999998 999984 23332 23555555 68999999999864 4444443
No 366
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.37 E-value=0.025 Score=47.85 Aligned_cols=31 Identities=32% Similarity=0.544 Sum_probs=29.4
Q ss_pred EEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 53 VAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 53 VvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
|+|+|+|-.|+..|..|++.|++|.++.|..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 7899999999999999999999999999875
No 367
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.31 E-value=0.074 Score=55.57 Aligned_cols=64 Identities=20% Similarity=0.195 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCE-EEEEeccCCccCCCCceeEEEecEEEecCCCChHh
Q 012488 143 EVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPY-VLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSRV 213 (462)
Q Consensus 143 ~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S~v 213 (462)
..+...|.+.+.+.|++++.++ +.++.. ++++.+ .+...+. .++....+.|+-||.|+|..+.+
T Consensus 126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~--~~~g~v~Gv~~~~~-----~~g~~~~i~AkaVVLATGG~~~~ 191 (570)
T PRK05675 126 HALLHTLYQGNLKNGTTFLNEWYAVDLVK--NQDGAVVGVIAICI-----ETGETVYIKSKATVLATGGAGRI 191 (570)
T ss_pred HHHHHHHHHHHhccCCEEEECcEEEEEEE--cCCCeEEEEEEEEc-----CCCcEEEEecCeEEECCCCcccc
Confidence 4677888888888899999988 888773 223322 2333221 23555789999999999998864
No 368
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=95.29 E-value=0.051 Score=56.00 Aligned_cols=33 Identities=33% Similarity=0.541 Sum_probs=29.3
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
.+|+|||+|.+|+=.|..|++..-+|.+.-|+.
T Consensus 184 KrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~ 216 (531)
T PF00743_consen 184 KRVLVVGGGNSGADIAVELSRVAKKVYLSTRRG 216 (531)
T ss_dssp SEEEEESSSHHHHHHHHHHTTTSCCEEEECC--
T ss_pred CEEEEEeCCHhHHHHHHHHHHhcCCeEEEEecc
Confidence 589999999999999999999999999988876
No 369
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=95.21 E-value=0.22 Score=54.99 Aligned_cols=33 Identities=33% Similarity=0.406 Sum_probs=30.3
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
-+|+|||||..|+=+|..+.+.|.+|+++.++.
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~ 480 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRT 480 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEecC
Confidence 489999999999999999999999999998764
No 370
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=95.20 E-value=0.027 Score=53.87 Aligned_cols=34 Identities=29% Similarity=0.413 Sum_probs=31.4
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
.++|+|+|+|..|...|..|++.|.+|+++.|..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~ 35 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGLPVRLILRDR 35 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCCCeEEEEech
Confidence 3579999999999999999999999999999964
No 371
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.16 E-value=0.023 Score=54.40 Aligned_cols=32 Identities=38% Similarity=0.435 Sum_probs=30.8
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 52 RVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
+|.|||+|..|...|..|+++|++|+++|+.+
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 69999999999999999999999999999986
No 372
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.16 E-value=0.024 Score=57.98 Aligned_cols=33 Identities=36% Similarity=0.434 Sum_probs=30.8
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
.+|+|||+|++|+.+|..|+++|++|+++|+.+
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~ 49 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGD 49 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 379999999999999999999999999999765
No 373
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=95.15 E-value=1.7 Score=44.94 Aligned_cols=74 Identities=19% Similarity=0.095 Sum_probs=52.9
Q ss_pred eeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCCChH-hhhh
Q 012488 139 MVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSR-VAKS 216 (462)
Q Consensus 139 ~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S~-vr~~ 216 (462)
.++-..+...+.+.+.+.|+++++.+ |+++.. ..+..+.|.+.+. .+++..+++|+.||.|+|.++. +.+.
T Consensus 124 ~vdp~~l~~al~~~A~~~Ga~i~~~t~V~~i~~--~~~~v~gv~v~~~-----~~g~~~~i~a~~VVnAaG~wa~~l~~~ 196 (516)
T TIGR03377 124 TVDPFRLVAANVLDAQEHGARIFTYTKVTGLIR--EGGRVTGVKVEDH-----KTGEEERIEAQVVINAAGIWAGRIAEY 196 (516)
T ss_pred EECHHHHHHHHHHHHHHcCCEEEcCcEEEEEEE--ECCEEEEEEEEEc-----CCCcEEEEEcCEEEECCCcchHHHHHh
Confidence 56777888889999999999999887 998873 2222223555431 1244468999999999999986 5555
Q ss_pred hcC
Q 012488 217 INA 219 (462)
Q Consensus 217 l~~ 219 (462)
++.
T Consensus 197 ~g~ 199 (516)
T TIGR03377 197 AGL 199 (516)
T ss_pred cCC
Confidence 554
No 374
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.11 E-value=0.025 Score=57.57 Aligned_cols=32 Identities=38% Similarity=0.392 Sum_probs=30.5
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 52 RVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
+|+|||.|++|+++|..|+++|++|+++|++.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~ 33 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRND 33 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 58999999999999999999999999999886
No 375
>PLN02852 ferredoxin-NADP+ reductase
Probab=95.10 E-value=0.29 Score=49.87 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=20.1
Q ss_pred ccEEEECCchHHHHHHHHHHHC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKN 72 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~ 72 (462)
-+|+|||+|..|+-+|..|.+.
T Consensus 167 k~VvVIGgGnvAlD~Ar~L~~~ 188 (491)
T PLN02852 167 DTAVVLGQGNVALDCARILLRP 188 (491)
T ss_pred CEEEEECCCHHHHHHHHHHHhC
Confidence 4799999999999999998876
No 376
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.06 E-value=0.031 Score=52.89 Aligned_cols=32 Identities=38% Similarity=0.648 Sum_probs=31.0
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 52 RVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
.|.|||+|..|...|..+++.|++|+++|+.+
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 38 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTE 38 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCH
Confidence 79999999999999999999999999999987
No 377
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=94.94 E-value=0.34 Score=49.37 Aligned_cols=34 Identities=26% Similarity=0.329 Sum_probs=30.2
Q ss_pred CccEEEECCchHHHHHHHHHHHCCC-cEEEEcCCC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGV-ETFLIERKL 83 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~-~v~v~E~~~ 83 (462)
.-.|+|||+|..|+-+|..+.+.|. +|+|+++++
T Consensus 282 gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~ 316 (467)
T TIGR01318 282 GKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD 316 (467)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC
Confidence 3589999999999999999999995 799999865
No 378
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=94.76 E-value=0.092 Score=50.66 Aligned_cols=61 Identities=25% Similarity=0.284 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCC--ChHhhhhhc
Q 012488 145 LDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGA--NSRVAKSIN 218 (462)
Q Consensus 145 l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~--~S~vr~~l~ 218 (462)
|.++-.+..++.||.++.+. |.++. .....+++.+.|| .+++.|+||.|.|- ||-+.+.-+
T Consensus 395 ls~wt~ekir~~GV~V~pna~v~sv~---~~~~nl~lkL~dG----------~~l~tD~vVvavG~ePN~ela~~sg 458 (659)
T KOG1346|consen 395 LSQWTIEKIRKGGVDVRPNAKVESVR---KCCKNLVLKLSDG----------SELRTDLVVVAVGEEPNSELAEASG 458 (659)
T ss_pred HHHHHHHHHHhcCceeccchhhhhhh---hhccceEEEecCC----------CeeeeeeEEEEecCCCchhhccccc
Confidence 44555566777789999776 77665 3445688999998 89999999999996 555554443
No 379
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=94.71 E-value=0.041 Score=53.52 Aligned_cols=33 Identities=33% Similarity=0.501 Sum_probs=30.8
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
++|.|||+|..|...|..|+++|++|++++|.+
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence 579999999999999999999999999999853
No 380
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=94.57 E-value=0.045 Score=52.35 Aligned_cols=30 Identities=33% Similarity=0.647 Sum_probs=29.1
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEcC
Q 012488 52 RVAVIGGGPAGGAAAETLAKNGVETFLIER 81 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~ 81 (462)
+|+|+|+|..|+++|..|++.|++|++++|
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 699999999999999999999999999998
No 381
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=94.55 E-value=0.045 Score=52.26 Aligned_cols=32 Identities=31% Similarity=0.635 Sum_probs=30.2
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 52 RVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
+|+|||+|-.|.++|..|++.|++|++++|++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~ 33 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRG 33 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCh
Confidence 69999999999999999999999999999854
No 382
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.54 E-value=0.054 Score=54.95 Aligned_cols=34 Identities=35% Similarity=0.463 Sum_probs=31.6
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
...|+|+|+|..|+.+|..|++.|++|+++|+..
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 3579999999999999999999999999999875
No 383
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=94.51 E-value=0.58 Score=49.83 Aligned_cols=34 Identities=32% Similarity=0.450 Sum_probs=30.0
Q ss_pred CccEEEECCchHHHHHHHHHHHCCC-cEEEEcCCC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGV-ETFLIERKL 83 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~-~v~v~E~~~ 83 (462)
.-+|+|||||..|+-+|..+.+.|. +|+|++++.
T Consensus 323 gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 323 GKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT 357 (652)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 3489999999999999999999987 599998764
No 384
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.41 E-value=0.049 Score=51.62 Aligned_cols=32 Identities=25% Similarity=0.281 Sum_probs=30.5
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 52 RVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
.|.|||+|..|...|..|+++|++|+++|+++
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 69999999999999999999999999999875
No 385
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=94.40 E-value=0.37 Score=46.95 Aligned_cols=55 Identities=20% Similarity=0.295 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCCChH
Q 012488 145 LDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSR 212 (462)
Q Consensus 145 l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S~ 212 (462)
+.++-.+...+.|+++..++ |.++. +..+.+...| |+.+++..-++|.|+|....
T Consensus 275 l~~yae~~f~~~~I~~~~~t~Vk~V~-----~~~I~~~~~~--------g~~~~iPYG~lVWatG~~~r 330 (491)
T KOG2495|consen 275 LVEYAENQFVRDGIDLDTGTMVKKVT-----EKTIHAKTKD--------GEIEEIPYGLLVWATGNGPR 330 (491)
T ss_pred HHHHHHHHhhhccceeecccEEEeec-----CcEEEEEcCC--------CceeeecceEEEecCCCCCc
Confidence 44455555566799999997 77765 2224444433 55588999999999997553
No 386
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.36 E-value=0.051 Score=52.03 Aligned_cols=32 Identities=19% Similarity=0.282 Sum_probs=30.7
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 52 RVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
.|.|||+|..|...|..++.+|++|+++|..+
T Consensus 9 ~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 69999999999999999999999999999876
No 387
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=94.35 E-value=0.26 Score=48.70 Aligned_cols=41 Identities=29% Similarity=0.373 Sum_probs=33.0
Q ss_pred HHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCC
Q 012488 154 EKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGA 209 (462)
Q Consensus 154 ~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~ 209 (462)
++.|++++.++ |+.++. . .-+|.+.+| ..+..+.+|.|+|.
T Consensus 138 ke~gIe~~~~t~v~~~D~----~-~K~l~~~~G----------e~~kys~LilATGs 179 (478)
T KOG1336|consen 138 KEKGIELILGTSVVKADL----A-SKTLVLGNG----------ETLKYSKLIIATGS 179 (478)
T ss_pred hhcCceEEEcceeEEeec----c-ccEEEeCCC----------ceeecceEEEeecC
Confidence 46789999888 888873 1 245777777 89999999999998
No 388
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=94.32 E-value=0.6 Score=51.45 Aligned_cols=33 Identities=27% Similarity=0.411 Sum_probs=28.9
Q ss_pred ccEEEECCchHHHHHHHHHHHC-C-CcEEEEcCCC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKN-G-VETFLIERKL 83 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~-g-~~v~v~E~~~ 83 (462)
-+|+|||||..|+-+|..+.+. | .+|+|+.+++
T Consensus 669 KrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~ 703 (1019)
T PRK09853 669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 703 (1019)
T ss_pred CEEEEECCChHHHHHHHHHHhcCCCceEEEEEccC
Confidence 4899999999999999998887 5 4899999875
No 389
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.31 E-value=0.051 Score=51.54 Aligned_cols=32 Identities=31% Similarity=0.507 Sum_probs=30.6
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 52 RVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
+|.|||+|..|...|..|+++|++|+++|+++
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 59999999999999999999999999999886
No 390
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=94.30 E-value=0.069 Score=45.49 Aligned_cols=31 Identities=29% Similarity=0.388 Sum_probs=28.9
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEc
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIE 80 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E 80 (462)
...|+|||||..|..-|..|.+.|.+|+|+.
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 4589999999999999999999999999995
No 391
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=94.27 E-value=0.071 Score=46.03 Aligned_cols=34 Identities=29% Similarity=0.404 Sum_probs=30.2
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
+..|+|+|+|.+|..+|..|...|.+|+++|...
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred CeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 4689999999999999999999999999999875
No 392
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.12 E-value=0.7 Score=49.32 Aligned_cols=33 Identities=27% Similarity=0.397 Sum_probs=29.0
Q ss_pred ccEEEECCchHHHHHHHHHHHCCC-cEEEEcCCC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGV-ETFLIERKL 83 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~-~v~v~E~~~ 83 (462)
.+|+|||||..|+-+|..+.+.|. +|+++.+++
T Consensus 469 k~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~ 502 (654)
T PRK12769 469 LNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRD 502 (654)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecC
Confidence 479999999999999999999986 699888764
No 393
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.06 E-value=0.06 Score=51.13 Aligned_cols=32 Identities=22% Similarity=0.481 Sum_probs=30.6
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 52 RVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
.|.|||+|..|...|..|+++|++|+++|+++
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 69999999999999999999999999999876
No 394
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.01 E-value=0.063 Score=51.02 Aligned_cols=32 Identities=31% Similarity=0.478 Sum_probs=30.6
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 52 RVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
+|.|||+|..|...|..|+++|++|+++|+++
T Consensus 6 kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 6 KVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 69999999999999999999999999999876
No 395
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=93.91 E-value=0.087 Score=47.06 Aligned_cols=32 Identities=31% Similarity=0.404 Sum_probs=29.8
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERK 82 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~ 82 (462)
..|+|||||.+|...+..|.+.|.+|+|+...
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~ 41 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEE 41 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 47999999999999999999999999999864
No 396
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.85 E-value=0.07 Score=50.41 Aligned_cols=32 Identities=25% Similarity=0.492 Sum_probs=30.6
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 52 RVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
+|.|||+|..|...|..|+++|++|+++|.++
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 69999999999999999999999999999876
No 397
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.84 E-value=0.097 Score=50.13 Aligned_cols=34 Identities=24% Similarity=0.353 Sum_probs=31.6
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
.++|.|||+|-.|.++|..|+++|++|++++|..
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 4579999999999999999999999999999875
No 398
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=93.81 E-value=0.083 Score=42.30 Aligned_cols=31 Identities=35% Similarity=0.624 Sum_probs=28.5
Q ss_pred EEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 53 VAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 53 VvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
|+|+|.|..|..++..|.+.+++|+++|+++
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 7999999999999999999888999999987
No 399
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=93.79 E-value=0.074 Score=51.31 Aligned_cols=33 Identities=27% Similarity=0.416 Sum_probs=31.5
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
++|.|+|.|-.||..|..|++.|++|+.+|.++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 479999999999999999999999999999987
No 400
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.76 E-value=0.083 Score=51.06 Aligned_cols=32 Identities=25% Similarity=0.440 Sum_probs=30.3
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 52 RVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
+|.|||+|..|.++|..|++.|++|+++.|+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 69999999999999999999999999999865
No 401
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.71 E-value=0.095 Score=50.27 Aligned_cols=32 Identities=31% Similarity=0.575 Sum_probs=30.4
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 52 RVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
+|.|||+|..|...|..|++.|++|+++|++.
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 69999999999999999999999999999875
No 402
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.70 E-value=0.091 Score=50.28 Aligned_cols=33 Identities=30% Similarity=0.521 Sum_probs=30.1
Q ss_pred cEEEECCchHHHHHHHHHHHCCC--cEEEEcCCCC
Q 012488 52 RVAVIGGGPAGGAAAETLAKNGV--ETFLIERKLD 84 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g~--~v~v~E~~~~ 84 (462)
+|.|||+|..|+++|+.|+++|+ +++++|++..
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~ 36 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKA 36 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCch
Confidence 69999999999999999999994 7999999763
No 403
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=93.51 E-value=1.1 Score=49.74 Aligned_cols=34 Identities=29% Similarity=0.455 Sum_probs=29.5
Q ss_pred CccEEEECCchHHHHHHHHHHHC-CC-cEEEEcCCC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKN-GV-ETFLIERKL 83 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~-g~-~v~v~E~~~ 83 (462)
.-+|+|||||..|+=+|..+.+. |. +|+|++++.
T Consensus 666 GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~ 701 (1012)
T TIGR03315 666 GKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT 701 (1012)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC
Confidence 35899999999999999998886 85 799999875
No 404
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=93.48 E-value=0.12 Score=45.95 Aligned_cols=34 Identities=29% Similarity=0.475 Sum_probs=31.1
Q ss_pred CccEEEECCchHHHHHHHHHHHCCC-cEEEEcCCC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGV-ETFLIERKL 83 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~-~v~v~E~~~ 83 (462)
...|+|||+|-.|+..|..|++.|+ +++|+|.+.
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ 55 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFDV 55 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence 4589999999999999999999999 699999874
No 405
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=93.45 E-value=0.067 Score=41.98 Aligned_cols=33 Identities=33% Similarity=0.570 Sum_probs=30.1
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERK 82 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~ 82 (462)
...|+|||||..|..-+..|.+.|-+|+|+.+.
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 458999999999999999999999999999876
No 406
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=93.44 E-value=0.11 Score=49.44 Aligned_cols=32 Identities=28% Similarity=0.604 Sum_probs=30.6
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 52 RVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
.|.|||+|..|...|..|+++|++|+++|+++
T Consensus 6 ~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 6 KVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 59999999999999999999999999999876
No 407
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=93.37 E-value=0.098 Score=43.29 Aligned_cols=32 Identities=19% Similarity=0.332 Sum_probs=28.0
Q ss_pred EEEECCchHHHHHHHHHHHCCCcEEEEcCCCC
Q 012488 53 VAVIGGGPAGGAAAETLAKNGVETFLIERKLD 84 (462)
Q Consensus 53 VvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 84 (462)
++|+|+|+.+..++..++..|++|+|+|.+++
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 58999999999999999999999999998863
No 408
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=93.36 E-value=0.14 Score=45.62 Aligned_cols=33 Identities=39% Similarity=0.617 Sum_probs=30.0
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERK 82 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~ 82 (462)
...|+|||||-.|...|..|.+.|.+|+|+++.
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 458999999999999999999999999999753
No 409
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=93.35 E-value=0.11 Score=51.11 Aligned_cols=34 Identities=26% Similarity=0.418 Sum_probs=31.4
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
..+|+|+|+|.+|+.+|..|++.|.+|+++|++.
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 4579999999999999999999999999999875
No 410
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=93.33 E-value=0.15 Score=42.56 Aligned_cols=33 Identities=39% Similarity=0.631 Sum_probs=29.7
Q ss_pred ccEEEECC-chHHHHHHHHHHHCCC--cEEEEcCCC
Q 012488 51 LRVAVIGG-GPAGGAAAETLAKNGV--ETFLIERKL 83 (462)
Q Consensus 51 ~dVvIVGg-G~aGl~~A~~L~~~g~--~v~v~E~~~ 83 (462)
++|+|||+ |..|.++|+.|...++ +++++|.+.
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 47999999 9999999999999875 799999885
No 411
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.26 E-value=0.095 Score=53.29 Aligned_cols=34 Identities=29% Similarity=0.300 Sum_probs=31.7
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
.-+|+|+|+|++|+.++..++..|.+|+++|.++
T Consensus 165 g~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 165 PAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4689999999999999999999999999999886
No 412
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=93.15 E-value=0.14 Score=48.91 Aligned_cols=33 Identities=27% Similarity=0.432 Sum_probs=30.0
Q ss_pred ccEEEECCchHHHHHHHHHHHCCC-cEEEEcCCC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGV-ETFLIERKL 83 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~-~v~v~E~~~ 83 (462)
++|.|||+|..|+..|..|+.+|+ +|+++|...
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~ 35 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVE 35 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 479999999999999999999887 899999854
No 413
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=93.15 E-value=0.2 Score=48.51 Aligned_cols=135 Identities=19% Similarity=0.203 Sum_probs=77.9
Q ss_pred CCCCccEEEECCchHHHHHHHHHHH--CCCcEEEEcCCCCCCCCcccccCccccccCCCChhhHhcccceEEEEcCCCce
Q 012488 47 TNRNLRVAVIGGGPAGGAAAETLAK--NGVETFLIERKLDNCKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVA 124 (462)
Q Consensus 47 ~~~~~dVvIVGgG~aGl~~A~~L~~--~g~~v~v~E~~~~~~~~~g~~i~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 124 (462)
.+.+...+|||||.+-.+++.+... .+.+|.+|-..+...... --++.+ | |-.-..+....+++-..+|+.
T Consensus 175 ~p~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmR-PPLSKE----L--W~~~dpn~~k~lrfkqwsGke 247 (659)
T KOG1346|consen 175 LPKHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMR-PPLSKE----L--WWYGDPNSAKKLRFKQWSGKE 247 (659)
T ss_pred CcccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccC-CCcchh----c--eecCCCChhhheeecccCCcc
Confidence 4556789999999988777766653 367888886655221100 001111 0 000001123334443334433
Q ss_pred EeccCcccCCCeEEeeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEE
Q 012488 125 VDIGQTLKPHEYIGMVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAV 203 (462)
Q Consensus 125 ~~~~~~~~~~~~~~~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlv 203 (462)
.++ .+.+..| +|+..+|... ..-|+.+..|. |+.++. . ...|.+.|| .+|..|-.
T Consensus 248 Rsi--ffepd~F--fvspeDLp~~-----~nGGvAvl~G~kvvkid~----~-d~~V~LnDG----------~~I~Ydkc 303 (659)
T KOG1346|consen 248 RSI--FFEPDGF--FVSPEDLPKA-----VNGGVAVLRGRKVVKIDE----E-DKKVILNDG----------TTIGYDKC 303 (659)
T ss_pred cee--EecCCcc--eeChhHCccc-----ccCceEEEeccceEEeec----c-cCeEEecCC----------cEeehhhe
Confidence 222 1123333 4666555542 34479999988 888872 2 245778888 89999999
Q ss_pred EecCCCChH
Q 012488 204 IGADGANSR 212 (462)
Q Consensus 204 I~AdG~~S~ 212 (462)
+.|+|.+.+
T Consensus 304 LIATG~~Pk 312 (659)
T KOG1346|consen 304 LIATGVRPK 312 (659)
T ss_pred eeecCcCcc
Confidence 999998775
No 414
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=93.10 E-value=0.077 Score=43.24 Aligned_cols=37 Identities=30% Similarity=0.481 Sum_probs=29.2
Q ss_pred CCCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 47 TNRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 47 ~~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
.+.+++|.|||+|-+|..+|..|.+.|+.|.-+..+.
T Consensus 7 ~~~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs 43 (127)
T PF10727_consen 7 QAARLKIGIIGAGRVGTALARALARAGHEVVGVYSRS 43 (127)
T ss_dssp -----EEEEECTSCCCCHHHHHHHHTTSEEEEESSCH
T ss_pred CCCccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 3446799999999999999999999999998876544
No 415
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=93.09 E-value=0.1 Score=52.16 Aligned_cols=32 Identities=34% Similarity=0.331 Sum_probs=30.7
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 52 RVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
+|.|||.|-.|+.+|..|+++|++|+++|+++
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~ 33 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQ 33 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCH
Confidence 69999999999999999999999999999986
No 416
>PLN02976 amine oxidase
Probab=93.01 E-value=19 Score=41.66 Aligned_cols=57 Identities=19% Similarity=0.121 Sum_probs=39.9
Q ss_pred CCCEEEEccCCcCcccCCcccHHHHHHHHHHHHHHHHHHhhcCCCC-CChhHHHHHHHHHH
Q 012488 320 SGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIIEGSENGTRM-IDEGDLRKYLEKWD 379 (462)
Q Consensus 320 ~~~v~liGDAAh~~~P~~G~G~~~a~~da~~la~~l~~a~~~~~~~-~~~~~L~~y~~~~~ 379 (462)
.+++++.|++.+...|-+-+| |+++|..+|+.|...+..+.+. ...++|+.+.+.-+
T Consensus 1150 ggRLFFAGEATS~~~pGTVHG---AIeSG~RAA~eIL~~L~~G~~~~~~~~~~~~~~~~~~ 1207 (1713)
T PLN02976 1150 ENCLFFAGEATCKEHPDTVGG---AMMSGLREAVRIIDILNTGNDYTAEVEALETAQRHSE 1207 (1713)
T ss_pred CCcEEEEehhhhCCCcchHHH---HHHHHHHHHHHHHHHHHccCccccHHHHHHHhhhhhh
Confidence 467999999988777766555 8999999999998888766432 23345555544333
No 417
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=92.99 E-value=0.16 Score=50.34 Aligned_cols=60 Identities=13% Similarity=0.073 Sum_probs=47.7
Q ss_pred eeehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCCChH
Q 012488 139 MVRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSR 212 (462)
Q Consensus 139 ~v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S~ 212 (462)
.++-..+...|.+.+++ |++++.++ |.+++. +++.+.|.+.+| ..++||.||.|+|.++.
T Consensus 131 ~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~---~~~~~~v~t~~g----------~~~~a~~vV~a~G~~~~ 191 (381)
T TIGR03197 131 WLSPPQLCRALLAHAGI-RLTLHFNTEITSLER---DGEGWQLLDANG----------EVIAASVVVLANGAQAG 191 (381)
T ss_pred ccChHHHHHHHHhccCC-CcEEEeCCEEEEEEE---cCCeEEEEeCCC----------CEEEcCEEEEcCCcccc
Confidence 46777888889999988 99999887 988873 334466766665 56899999999999885
No 418
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=92.97 E-value=0.15 Score=48.51 Aligned_cols=37 Identities=16% Similarity=0.274 Sum_probs=34.6
Q ss_pred CCCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 47 TNRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 47 ~~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
....+||+|+|-|+.=+.++.+|+..|.+|+.+|+++
T Consensus 3 ~~~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd 39 (434)
T COG5044 3 EETLYDVIILGTGLRESILSAALSWDGKNVLHIDKND 39 (434)
T ss_pred ccccccEEEecccHHHHHHHHHhhhcCceEEEEeCCC
Confidence 3457999999999999999999999999999999998
No 419
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=92.93 E-value=0.19 Score=48.25 Aligned_cols=38 Identities=24% Similarity=0.508 Sum_probs=32.9
Q ss_pred CCCCccEEEECCchHHHHHHHHHHHCCC--cEEEEcCCCC
Q 012488 47 TNRNLRVAVIGGGPAGGAAAETLAKNGV--ETFLIERKLD 84 (462)
Q Consensus 47 ~~~~~dVvIVGgG~aGl~~A~~L~~~g~--~v~v~E~~~~ 84 (462)
.....+|.|||+|-.|.++|+.|+..|+ +++++|.+..
T Consensus 3 ~~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~ 42 (315)
T PRK00066 3 KKQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKE 42 (315)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCc
Confidence 3445699999999999999999999998 7999998653
No 420
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.92 E-value=0.14 Score=49.64 Aligned_cols=33 Identities=42% Similarity=0.521 Sum_probs=30.9
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
++|.|||+|.-|...|..|++.|++|++++|.+
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 379999999999999999999999999999965
No 421
>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]
Probab=92.87 E-value=0.13 Score=45.49 Aligned_cols=33 Identities=27% Similarity=0.567 Sum_probs=31.3
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
..|.|||||.-|+-.|...+..|++|.++|++.
T Consensus 12 ~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~ 44 (298)
T KOG2304|consen 12 KNVAIVGAGQMGSGIAQVAATSGLNVWLVDANE 44 (298)
T ss_pred cceEEEcccccchhHHHHHHhcCCceEEecCCH
Confidence 379999999999999999999999999999987
No 422
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=92.82 E-value=0.19 Score=49.50 Aligned_cols=45 Identities=20% Similarity=0.286 Sum_probs=39.0
Q ss_pred cccCCCCCCCCCccEEEECC-chHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 39 AAKTSPKLTNRNLRVAVIGG-GPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 39 ~~~~~~~~~~~~~dVvIVGg-G~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
+....+.|...+++|+|.|| |..|..++..|.++|++|+.++|..
T Consensus 10 ~~~~~~~~~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~ 55 (370)
T PLN02695 10 ELEREPYWPSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKK 55 (370)
T ss_pred hcCCCCCCCCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEecc
Confidence 44556667777889999999 9999999999999999999999864
No 423
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=92.80 E-value=0.13 Score=49.64 Aligned_cols=32 Identities=41% Similarity=0.567 Sum_probs=30.6
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 52 RVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
+|.|||+|..|...|..|++.|++|+++++++
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 79999999999999999999999999999875
No 424
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=92.76 E-value=0.14 Score=51.22 Aligned_cols=33 Identities=21% Similarity=0.230 Sum_probs=31.3
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
..|.|||.|-.|+.+|..|+++|++|+++|+++
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~ 36 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCH
Confidence 479999999999999999999999999999877
No 425
>PRK04148 hypothetical protein; Provisional
Probab=92.66 E-value=0.13 Score=42.23 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=29.6
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
.+|++||.| .|...|..|++.|++|+.+|.++
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~ 49 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINE 49 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCH
Confidence 479999999 99888999999999999999887
No 426
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=92.63 E-value=1.8 Score=48.50 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=28.0
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCc-EEEEcCC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVE-TFLIERK 82 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~-v~v~E~~ 82 (462)
.-+|+|||||..|+=+|..+.+.|.+ |+++.++
T Consensus 571 Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr 604 (1006)
T PRK12775 571 GKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRR 604 (1006)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeec
Confidence 35899999999999999999999985 6667654
No 427
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=92.62 E-value=0.17 Score=41.91 Aligned_cols=34 Identities=38% Similarity=0.689 Sum_probs=30.6
Q ss_pred CccEEEECCchHHHHHHHHHHHCCC-cEEEEcCCC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGV-ETFLIERKL 83 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~-~v~v~E~~~ 83 (462)
+..|+|+|+|-.|+..|..|++.|+ +++|+|.+.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~ 36 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI 36 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence 3579999999999999999999998 699999886
No 428
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=92.59 E-value=0.13 Score=45.64 Aligned_cols=34 Identities=38% Similarity=0.502 Sum_probs=29.1
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
..+|+|||+|.++.-+|..|++.|.+|+++=|.+
T Consensus 167 ~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 167 GKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp TSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred CCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 4689999999999999999999999999998875
No 429
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=92.57 E-value=0.13 Score=48.47 Aligned_cols=32 Identities=22% Similarity=0.445 Sum_probs=30.2
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 52 RVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
+|.|||.|..|.++|..|+++|++|+++++++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 69999999999999999999999999999875
No 430
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=92.45 E-value=0.17 Score=50.17 Aligned_cols=33 Identities=24% Similarity=0.320 Sum_probs=30.8
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
-.|+|+|+|+.|+.+|..++..|.+|+++|.++
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 489999999999999999999999999999875
No 431
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=92.15 E-value=0.31 Score=40.34 Aligned_cols=34 Identities=38% Similarity=0.486 Sum_probs=31.1
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCc-EEEEcCCC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVE-TFLIERKL 83 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~-v~v~E~~~ 83 (462)
...|+|+|+|-+|-.++..|...|.+ ++|+-|..
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~ 46 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRTP 46 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSH
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 45899999999999999999999997 99999875
No 432
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=92.14 E-value=0.4 Score=47.61 Aligned_cols=35 Identities=23% Similarity=0.458 Sum_probs=31.5
Q ss_pred CCccEEEECC-chHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 49 RNLRVAVIGG-GPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 49 ~~~dVvIVGg-G~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
....|+|+|| |..|..++..|.++|++|+++.|+.
T Consensus 59 ~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~ 94 (390)
T PLN02657 59 KDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREK 94 (390)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEech
Confidence 3458999998 9999999999999999999999875
No 433
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=92.02 E-value=0.25 Score=42.38 Aligned_cols=33 Identities=36% Similarity=0.555 Sum_probs=29.2
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
.+|.|||-|-.|...|..|.++|++|.++++.+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 379999999999999999999999999999886
No 434
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=91.99 E-value=0.22 Score=45.06 Aligned_cols=32 Identities=38% Similarity=0.551 Sum_probs=29.5
Q ss_pred cEEEEC-CchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 52 RVAVIG-GGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 52 dVvIVG-gG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
+|.||| +|..|.++|..|++.|++|+++.|++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 699997 79999999999999999999998865
No 435
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=91.98 E-value=0.18 Score=48.11 Aligned_cols=33 Identities=27% Similarity=0.539 Sum_probs=29.8
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
++|.|+|+|-.|+..|..|++.|.+|+++-|.+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~ 33 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSR 33 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence 379999999999999999999998888887765
No 436
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=91.93 E-value=0.18 Score=49.85 Aligned_cols=31 Identities=16% Similarity=0.244 Sum_probs=28.8
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 52 RVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
+|.|||.|-.|+.+|..++. |++|+++|++.
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~ 32 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILP 32 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCH
Confidence 69999999999999988885 99999999987
No 437
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=91.89 E-value=0.3 Score=46.93 Aligned_cols=34 Identities=21% Similarity=0.430 Sum_probs=31.3
Q ss_pred ccEEEECCchHHHHHHHHHHHCCC-cEEEEcCCCC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGV-ETFLIERKLD 84 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~-~v~v~E~~~~ 84 (462)
.+|+|||+|-.|..+|..++..|+ +++++|.++.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~ 41 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN 41 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence 589999999999999999999996 9999998874
No 438
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=91.88 E-value=0.29 Score=42.17 Aligned_cols=35 Identities=20% Similarity=0.251 Sum_probs=30.8
Q ss_pred CCccEEEECCch-HHHHHHHHHHHCCCcEEEEcCCC
Q 012488 49 RNLRVAVIGGGP-AGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 49 ~~~dVvIVGgG~-aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
...+|+|||+|- +|..+|..|.+.|.+|+++.|..
T Consensus 43 ~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~ 78 (168)
T cd01080 43 AGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT 78 (168)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc
Confidence 356899999996 79999999999999999999863
No 439
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=91.87 E-value=0.24 Score=47.89 Aligned_cols=34 Identities=29% Similarity=0.591 Sum_probs=31.3
Q ss_pred CccEEEECCchHHHHHHHHHHHCCC-cEEEEcCCC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGV-ETFLIERKL 83 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~-~v~v~E~~~ 83 (462)
...|+|||+|-.|+.+|..|++.|+ +++|+|++.
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 3579999999999999999999998 899999886
No 440
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=91.78 E-value=0.19 Score=51.45 Aligned_cols=32 Identities=34% Similarity=0.538 Sum_probs=30.8
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 52 RVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
.|.|||+|..|...|..|+++|++|+++|+.+
T Consensus 7 kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~ 38 (503)
T TIGR02279 7 TVAVIGAGAMGAGIAQVAASAGHQVLLYDIRA 38 (503)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 69999999999999999999999999999987
No 441
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=91.68 E-value=0.22 Score=50.49 Aligned_cols=33 Identities=21% Similarity=0.547 Sum_probs=30.1
Q ss_pred ccEEEECCchHHHHHHHHHHHC--CCcEEEEcCCC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKN--GVETFLIERKL 83 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~--g~~v~v~E~~~ 83 (462)
++|+|||.|-.|+.+|..|+++ |++|+.+|.++
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 4799999999999999999988 57899999887
No 442
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=91.56 E-value=0.19 Score=52.49 Aligned_cols=34 Identities=24% Similarity=0.335 Sum_probs=32.1
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
+-.|+|+|.|..|..+|..|.++|++|+++|+++
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~ 450 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIETSR 450 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCCEEEEECCH
Confidence 4589999999999999999999999999999987
No 443
>PRK06223 malate dehydrogenase; Reviewed
Probab=91.54 E-value=0.27 Score=47.07 Aligned_cols=34 Identities=24% Similarity=0.419 Sum_probs=30.5
Q ss_pred ccEEEECCchHHHHHHHHHHHCCC-cEEEEcCCCC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGV-ETFLIERKLD 84 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~-~v~v~E~~~~ 84 (462)
.+|.|||+|..|..+|..++..|+ +|+++|.+..
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~ 37 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG 37 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 489999999999999999999876 9999998653
No 444
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=91.50 E-value=0.26 Score=50.59 Aligned_cols=32 Identities=28% Similarity=0.523 Sum_probs=30.7
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 52 RVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
+|.|||+|..|...|..|+++|++|+++|+.+
T Consensus 6 kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 69999999999999999999999999999976
No 445
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=91.39 E-value=16 Score=36.22 Aligned_cols=58 Identities=19% Similarity=0.083 Sum_probs=38.4
Q ss_pred HHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEEEEEe-ccCCccCCCCceeEEEecEEEecCCCChHhhhhh
Q 012488 146 DAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYVLYYT-EYDGTKGGVGEKRTLEVDAVIGADGANSRVAKSI 217 (462)
Q Consensus 146 ~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~~~~adlvI~AdG~~S~vr~~l 217 (462)
.+.|.+.+++.|.+|+.++ |.+|.. .++.+++.+. ++ .++.||.||.|.-... +.+.+
T Consensus 200 ~~~l~~~l~~~g~~i~~~~~V~~i~~---~~~~~~~~~~~~g----------~~~~~d~vi~a~p~~~-~~~ll 259 (419)
T TIGR03467 200 PEPARRWLDSRGGEVRLGTRVRSIEA---NAGGIRALVLSGG----------ETLPADAVVLAVPPRH-AASLL 259 (419)
T ss_pred HHHHHHHHHHcCCEEEcCCeeeEEEE---cCCcceEEEecCC----------ccccCCEEEEcCCHHH-HHHhC
Confidence 3446667777899999988 999983 2334544443 43 5789999999876443 34433
No 446
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=91.38 E-value=0.18 Score=50.35 Aligned_cols=33 Identities=33% Similarity=0.258 Sum_probs=26.4
Q ss_pred CCEEEEccCCcCcccCCcccHHHHHHHHHHHHHHHH
Q 012488 321 GRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAII 356 (462)
Q Consensus 321 ~~v~liGDAAh~~~P~~G~G~~~a~~da~~la~~l~ 356 (462)
+|++++||..+...+ .|+.-|+.+|..+|+.|+
T Consensus 418 ~~l~~aG~~~~~~~~---~~~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 418 PGLYFAGDWTSPGYP---GGIEGAILSGRRAAEEIL 450 (450)
T ss_dssp TTEEE-SGGGSSSST---TSHHHHHHHHHHHHHHHH
T ss_pred eEEEEeecccCCCCC---CcHHHHHHHHHHHHHHhC
Confidence 599999998655444 699999999999998874
No 447
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=91.34 E-value=0.34 Score=43.20 Aligned_cols=34 Identities=35% Similarity=0.503 Sum_probs=31.2
Q ss_pred CccEEEECCchHHHHHHHHHHHCCC-cEEEEcCCC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGV-ETFLIERKL 83 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~-~v~v~E~~~ 83 (462)
+..|+|||.|-.|+.+|..|++.|+ +++++|.+.
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 4689999999999999999999998 799999875
No 448
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=91.32 E-value=0.86 Score=45.24 Aligned_cols=67 Identities=16% Similarity=0.208 Sum_probs=48.0
Q ss_pred eehHHHHHHHHHHHHHCCCEEEcce-eEEEEecCCCCCCEE-EEEeccCCccCCCCceeEEEecEEEecCCCC-hH-hhh
Q 012488 140 VRREVLDAYLRERAEKNGASVINGL-FMKMDLPRNFEQPYV-LYYTEYDGTKGGVGEKRTLEVDAVIGADGAN-SR-VAK 215 (462)
Q Consensus 140 v~r~~l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~~~~-v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~-S~-vr~ 215 (462)
+.-..|.+.|.+.+++.|++++.+. |.++.. +++.++ +.+.++ ....+++|.+|.|+|.+ |. +.+
T Consensus 260 v~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~---~~~~v~~V~t~~g--------~~~~l~AD~vVLAaGaw~S~gL~a 328 (419)
T TIGR03378 260 LLGIRLEEALKHRFEQLGGVMLPGDRVLRAEF---EGNRVTRIHTRNH--------RDIPLRADHFVLASGSFFSNGLVA 328 (419)
T ss_pred CcHHHHHHHHHHHHHHCCCEEEECcEEEEEEe---eCCeEEEEEecCC--------ccceEECCEEEEccCCCcCHHHHh
Confidence 4556788889999999999999885 888773 233344 332332 12589999999999999 75 544
Q ss_pred hh
Q 012488 216 SI 217 (462)
Q Consensus 216 ~l 217 (462)
.+
T Consensus 329 ~l 330 (419)
T TIGR03378 329 EF 330 (419)
T ss_pred hc
Confidence 44
No 449
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=91.25 E-value=14 Score=37.72 Aligned_cols=65 Identities=14% Similarity=0.146 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHCCCEEEcce-eEEEEecCCCCC---CEEEEEeccCCccCCCCceeEEEecEEEecCCCChHhhhhh
Q 012488 145 LDAYLRERAEKNGASVINGL-FMKMDLPRNFEQ---PYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSRVAKSI 217 (462)
Q Consensus 145 l~~~L~~~~~~~gv~i~~~~-v~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S~vr~~l 217 (462)
+.+-|.+.+++.|++|+.++ |.++.....+++ ...|.+.++ +...++.+|.||.|...+. .++.+
T Consensus 221 l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g-------~~~~~~~aD~VVlA~p~~~-~~~Ll 289 (474)
T TIGR02732 221 LTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKP-------EGKKVIKADAYVAACDVPG-IKRLL 289 (474)
T ss_pred HHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecC-------CcceEEECCEEEECCChHH-HHhhC
Confidence 45667778888999999998 999974221112 122334433 1124589999999999764 34444
No 450
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=91.22 E-value=0.26 Score=47.12 Aligned_cols=33 Identities=33% Similarity=0.432 Sum_probs=29.8
Q ss_pred ccEEEECCchHHHHHHHHHHHCCC--cEEEEcCCC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGV--ETFLIERKL 83 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~--~v~v~E~~~ 83 (462)
.+|.|||+|..|.++|..|++.|+ +|+++++++
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~ 41 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA 41 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 479999999999999999999985 899999875
No 451
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=91.20 E-value=0.31 Score=44.81 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=32.1
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCCC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKLD 84 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~~ 84 (462)
+..++|+|||+.+..+|..++..|++|+|+|.++.
T Consensus 100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 46899999999999999999999999999997763
No 452
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=91.20 E-value=0.34 Score=45.02 Aligned_cols=34 Identities=35% Similarity=0.523 Sum_probs=30.8
Q ss_pred CccEEEECCchHHHHHHHHHHHCCC-cEEEEcCCC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGV-ETFLIERKL 83 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~-~v~v~E~~~ 83 (462)
...|+|||+|-.|+.+|..|++.|+ +++|+|.+.
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 4579999999999999999999995 799999775
No 453
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=91.08 E-value=0.31 Score=50.05 Aligned_cols=32 Identities=34% Similarity=0.553 Sum_probs=30.8
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 52 RVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
.|.|||+|..|...|..|+++|++|+++|+.+
T Consensus 9 ~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~ 40 (507)
T PRK08268 9 TVAVIGAGAMGAGIAQVAAQAGHTVLLYDARA 40 (507)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 69999999999999999999999999999987
No 454
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=91.05 E-value=0.34 Score=46.96 Aligned_cols=34 Identities=35% Similarity=0.626 Sum_probs=31.3
Q ss_pred CccEEEECCchHHHHHHHHHHHCCC-cEEEEcCCC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGV-ETFLIERKL 83 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~-~v~v~E~~~ 83 (462)
...|+|||+|-.|+.+|..|++.|+ +++|+|.+.
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 4589999999999999999999999 899999875
No 455
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=91.03 E-value=0.37 Score=41.83 Aligned_cols=32 Identities=31% Similarity=0.505 Sum_probs=29.4
Q ss_pred cEEEECCchHHHHHHHHHHHCCCc-EEEEcCCC
Q 012488 52 RVAVIGGGPAGGAAAETLAKNGVE-TFLIERKL 83 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g~~-v~v~E~~~ 83 (462)
+|+|||+|-.|+..|..|++.|+. ++++|.+.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 489999999999999999999995 99999875
No 456
>PLN02572 UDP-sulfoquinovose synthase
Probab=90.99 E-value=0.54 Score=47.49 Aligned_cols=32 Identities=41% Similarity=0.573 Sum_probs=29.1
Q ss_pred ccEEEECC-chHHHHHHHHHHHCCCcEEEEcCC
Q 012488 51 LRVAVIGG-GPAGGAAAETLAKNGVETFLIERK 82 (462)
Q Consensus 51 ~dVvIVGg-G~aGl~~A~~L~~~g~~v~v~E~~ 82 (462)
..|+|.|| |..|..++..|.+.|++|+++++.
T Consensus 48 k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~~ 80 (442)
T PLN02572 48 KKVMVIGGDGYCGWATALHLSKRGYEVAIVDNL 80 (442)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEecc
Confidence 47999997 999999999999999999999853
No 457
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=90.88 E-value=0.33 Score=47.43 Aligned_cols=33 Identities=36% Similarity=0.616 Sum_probs=31.2
Q ss_pred ccEEEECCchHHHHHHHHHHHCC-CcEEEEcCCC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNG-VETFLIERKL 83 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g-~~v~v~E~~~ 83 (462)
.+|+|+|+|-.|..+|..|+++| .+|+|.+|..
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~ 35 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSK 35 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCH
Confidence 48999999999999999999999 9999999986
No 458
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=90.80 E-value=0.28 Score=52.62 Aligned_cols=32 Identities=31% Similarity=0.471 Sum_probs=30.8
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 52 RVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
.|.|||+|..|...|..++++|++|+++|.+.
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (715)
T PRK11730 315 QAAVLGAGIMGGGIAYQSASKGVPVIMKDINQ 346 (715)
T ss_pred eEEEECCchhHHHHHHHHHhCCCeEEEEeCCH
Confidence 69999999999999999999999999999886
No 459
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=90.79 E-value=0.28 Score=49.76 Aligned_cols=32 Identities=22% Similarity=0.448 Sum_probs=30.6
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 52 RVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
+|+|+|+|..|..+|..|.+.|++|+++|+++
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~ 33 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDE 33 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 69999999999999999999999999999976
No 460
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.77 E-value=0.26 Score=47.60 Aligned_cols=36 Identities=19% Similarity=0.336 Sum_probs=34.2
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 48 NRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 48 ~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
+.++||||||-|..-..+|.+.+|.|.+|+-+|+++
T Consensus 6 P~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~ 41 (547)
T KOG4405|consen 6 PEEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNE 41 (547)
T ss_pred chhccEEEEcCCCcHHHHHHHhhhcCCceEeccCcc
Confidence 567999999999999999999999999999999997
No 461
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=90.66 E-value=0.34 Score=46.09 Aligned_cols=33 Identities=27% Similarity=0.447 Sum_probs=30.8
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
++|.|||.|..|...|..|++.|++|+++++++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~ 35 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNP 35 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 479999999999999999999999999999875
No 462
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.61 E-value=0.42 Score=48.40 Aligned_cols=33 Identities=30% Similarity=0.370 Sum_probs=30.8
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
..|+|+|.|.+|.++|..|+++|++|+++|..+
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~ 38 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAEL 38 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 479999999999999999999999999999765
No 463
>PLN00016 RNA-binding protein; Provisional
Probab=90.59 E-value=0.34 Score=47.83 Aligned_cols=36 Identities=31% Similarity=0.353 Sum_probs=32.0
Q ss_pred CCCccEEEE----CC-chHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 48 NRNLRVAVI----GG-GPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 48 ~~~~dVvIV----Gg-G~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
.+...|+|+ || |..|..++..|.+.|++|+++.|..
T Consensus 50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~ 90 (378)
T PLN00016 50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGK 90 (378)
T ss_pred cccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCC
Confidence 344679999 76 9999999999999999999999876
No 464
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=90.58 E-value=0.89 Score=46.72 Aligned_cols=33 Identities=36% Similarity=0.539 Sum_probs=32.1
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
+||+|||||++||++|..|+++|++|+|+||+.
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~ 33 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYL 33 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCC
Confidence 599999999999999999999999999999987
No 465
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=90.55 E-value=0.37 Score=46.10 Aligned_cols=33 Identities=33% Similarity=0.543 Sum_probs=30.0
Q ss_pred cEEEECCchHHHHHHHHHHHCC--CcEEEEcCCCC
Q 012488 52 RVAVIGGGPAGGAAAETLAKNG--VETFLIERKLD 84 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g--~~v~v~E~~~~ 84 (462)
+|+|||+|-+|.++|..|+..| .+++++|++..
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 6999999999999999999999 47999999763
No 466
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=90.47 E-value=0.36 Score=49.07 Aligned_cols=34 Identities=29% Similarity=0.292 Sum_probs=31.6
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
..+|+|+|+|++|+.++..++..|.+|+++|++.
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4589999999999999999999999999999876
No 467
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=90.43 E-value=0.32 Score=52.12 Aligned_cols=32 Identities=28% Similarity=0.420 Sum_probs=30.9
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 52 RVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
.|.|||||..|...|..++.+|++|+++|.+.
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (714)
T TIGR02437 315 QAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ 346 (714)
T ss_pred eEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence 69999999999999999999999999999886
No 468
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=90.43 E-value=0.36 Score=47.68 Aligned_cols=33 Identities=24% Similarity=0.183 Sum_probs=31.0
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
..|+|+|.|+.|..+|..|+..|.+|+++|.++
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 489999999999999999999999999999876
No 469
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=90.27 E-value=4.1 Score=43.38 Aligned_cols=34 Identities=24% Similarity=0.231 Sum_probs=29.3
Q ss_pred CccEEEECCchHHHHHHHHHHHCCC-cEEEEcCCC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGV-ETFLIERKL 83 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~-~v~v~E~~~ 83 (462)
.-+|+|||+|..|+-+|..+.+.|- +|+++++++
T Consensus 451 gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~ 485 (639)
T PRK12809 451 GKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRD 485 (639)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC
Confidence 3589999999999999998888885 799998764
No 470
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=90.22 E-value=0.5 Score=39.44 Aligned_cols=32 Identities=38% Similarity=0.513 Sum_probs=29.6
Q ss_pred cEEEECCchHHHHHHHHHHHCCC-cEEEEcCCC
Q 012488 52 RVAVIGGGPAGGAAAETLAKNGV-ETFLIERKL 83 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g~-~v~v~E~~~ 83 (462)
.|+|||+|-.|+..|..|++.|+ +++|+|.+.
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 48999999999999999999998 699999876
No 471
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=90.22 E-value=0.42 Score=45.42 Aligned_cols=34 Identities=32% Similarity=0.307 Sum_probs=31.9
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
..+|+|+|.|.+|..++..|++.|.+|+++++++
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4689999999999999999999999999999985
No 472
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=90.21 E-value=3.1 Score=40.60 Aligned_cols=51 Identities=25% Similarity=0.244 Sum_probs=37.7
Q ss_pred CCEEEcce-eEEEEecCCCCCCEEEEEeccCCccCCCCceeEEEecEEEecCCCChHhh
Q 012488 157 GASVINGL-FMKMDLPRNFEQPYVLYYTEYDGTKGGVGEKRTLEVDAVIGADGANSRVA 214 (462)
Q Consensus 157 gv~i~~~~-v~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~adlvI~AdG~~S~vr 214 (462)
.+.++.++ |.+++. ..++.+.+++... .+++..+++.|.||.|+|.+-.+-
T Consensus 292 ~v~l~~~~ev~~~~~--~G~g~~~l~~~~~-----~~~~~~t~~~D~vIlATGY~~~~P 343 (436)
T COG3486 292 DVRLLSLSEVQSVEP--AGDGRYRLTLRHH-----ETGELETVETDAVILATGYRRAVP 343 (436)
T ss_pred Ceeeccccceeeeec--CCCceEEEEEeec-----cCCCceEEEeeEEEEecccccCCc
Confidence 46777777 888883 3334477877765 467789999999999999885443
No 473
>PRK13984 putative oxidoreductase; Provisional
Probab=90.17 E-value=2.3 Score=44.97 Aligned_cols=34 Identities=21% Similarity=0.006 Sum_probs=27.6
Q ss_pred CCCEEEEccCCcCcccCCcccHHHHHHHHHHHHHHHHHHh
Q 012488 320 SGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIIEGS 359 (462)
Q Consensus 320 ~~~v~liGDAAh~~~P~~G~G~~~a~~da~~la~~l~~a~ 359 (462)
.++|+.+||+++.. .+..|+.+|..+|..|.+.+
T Consensus 568 ~~gVfAaGD~~~~~------~~v~Ai~~G~~AA~~I~~~L 601 (604)
T PRK13984 568 IPWLFAGGDIVHGP------DIIHGVADGYWAAEGIDMYL 601 (604)
T ss_pred CCCEEEecCcCCch------HHHHHHHHHHHHHHHHHHHh
Confidence 46899999998632 36789999999999987765
No 474
>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]
Probab=90.15 E-value=3.4 Score=40.54 Aligned_cols=40 Identities=20% Similarity=0.265 Sum_probs=33.4
Q ss_pred CCCCCCCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 44 PKLTNRNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 44 ~~~~~~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
+.....+..|||+|.|.+|.+++..|-..-++|+|+.-+.
T Consensus 49 ~~~~~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPRn 88 (491)
T KOG2495|consen 49 PKNGGKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPRN 88 (491)
T ss_pred CCCCCCCceEEEEcCchHHHHHHHhccccccceEEecccc
Confidence 3344566799999999999999999988899999998654
No 475
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.12 E-value=0.45 Score=48.22 Aligned_cols=33 Identities=33% Similarity=0.328 Sum_probs=30.5
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
..|+|+|+|..|.++|..|++.|.+|++.|++.
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 369999999999999999999999999999765
No 476
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=90.11 E-value=0.34 Score=51.02 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=32.1
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
+..|+|+|.|..|..+|..|.++|++++++|+++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~ 433 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDI 433 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCH
Confidence 4579999999999999999999999999999987
No 477
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=90.07 E-value=0.46 Score=46.82 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=31.0
Q ss_pred CCccEEEEC-CchHHHHHHHHHHHCCCcEEEEcCC
Q 012488 49 RNLRVAVIG-GGPAGGAAAETLAKNGVETFLIERK 82 (462)
Q Consensus 49 ~~~dVvIVG-gG~aGl~~A~~L~~~g~~v~v~E~~ 82 (462)
....|+||| .|.-|..+|..|+++|++|++++++
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence 345899999 8999999999999999999999985
No 478
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=90.05 E-value=0.52 Score=42.34 Aligned_cols=34 Identities=29% Similarity=0.490 Sum_probs=30.7
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCc-EEEEcCCC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVE-TFLIERKL 83 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~-v~v~E~~~ 83 (462)
...|+|||+|-.|+.+|..|++.|+. ++++|.+.
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 62 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV 62 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 45799999999999999999999985 99999875
No 479
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=90.01 E-value=0.52 Score=45.10 Aligned_cols=34 Identities=29% Similarity=0.429 Sum_probs=30.2
Q ss_pred CccEEEECCchHHHHHHHHHHHCCC--cEEEEcCCC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGV--ETFLIERKL 83 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~--~v~v~E~~~ 83 (462)
+.+|.|||+|-.|.++|+.|+..|+ +++|+|.+.
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~ 38 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE 38 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 3589999999999999999998876 689999876
No 480
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=89.99 E-value=0.49 Score=43.40 Aligned_cols=34 Identities=35% Similarity=0.448 Sum_probs=30.3
Q ss_pred CccEEEECCchHHHHHHHHHHHCCC-cEEEEcCCC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGV-ETFLIERKL 83 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~-~v~v~E~~~ 83 (462)
..+|+|||+|-.|+.+|..|++.|+ +++++|.+.
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ 58 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDT 58 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCc
Confidence 4589999999999999999999997 678888775
No 481
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.95 E-value=0.38 Score=49.32 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=30.2
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
..|+|+|.|..|++++..|.+.|.+|++.|+++
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~ 45 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDDP 45 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 379999999999999999999999999999654
No 482
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=89.94 E-value=0.35 Score=45.87 Aligned_cols=32 Identities=28% Similarity=0.336 Sum_probs=30.1
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 52 RVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
+|.|||.|..|...|..|++.|++|+++++++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 48899999999999999999999999999876
No 483
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=89.91 E-value=0.38 Score=45.86 Aligned_cols=31 Identities=26% Similarity=0.485 Sum_probs=28.6
Q ss_pred EEEECCchHHHHHHHHHHHCCC-cEEEEcCCC
Q 012488 53 VAVIGGGPAGGAAAETLAKNGV-ETFLIERKL 83 (462)
Q Consensus 53 VvIVGgG~aGl~~A~~L~~~g~-~v~v~E~~~ 83 (462)
|.|||+|-.|..+|..|+..|+ +|+++|.++
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 6899999999999999999887 999999875
No 484
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=89.89 E-value=0.34 Score=52.14 Aligned_cols=32 Identities=28% Similarity=0.471 Sum_probs=30.8
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 52 RVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
.|.|||||..|...|..++.+|++|+++|..+
T Consensus 337 ~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~ 368 (737)
T TIGR02441 337 TLAVLGAGLMGAGIAQVSVDKGLKTVLKDATP 368 (737)
T ss_pred EEEEECCCHhHHHHHHHHHhCCCcEEEecCCH
Confidence 69999999999999999999999999999887
No 485
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=89.71 E-value=0.54 Score=43.30 Aligned_cols=34 Identities=38% Similarity=0.453 Sum_probs=30.7
Q ss_pred CccEEEECCchHHHHHHHHHHHCCC-cEEEEcCCC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGV-ETFLIERKL 83 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~-~v~v~E~~~ 83 (462)
+.+|+|||+|-.|+.+|..|++.|+ +++|+|.+.
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 66 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDT 66 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 4589999999999999999999998 788998775
No 486
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=89.70 E-value=0.55 Score=44.03 Aligned_cols=34 Identities=29% Similarity=0.546 Sum_probs=31.5
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
...|+|||.|.-|-+.|..|++.|+.|.++.++.
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~ 36 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDR 36 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecC
Confidence 4579999999999999999999999999998876
No 487
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.67 E-value=0.44 Score=48.46 Aligned_cols=32 Identities=28% Similarity=0.340 Sum_probs=30.5
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 52 RVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
+|.|+|.|.+|.++|..|++.|++|++.|+++
T Consensus 16 ~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 16 KVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred eEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 79999999999999999999999999999875
No 488
>PTZ00117 malate dehydrogenase; Provisional
Probab=89.61 E-value=0.55 Score=45.14 Aligned_cols=35 Identities=17% Similarity=0.317 Sum_probs=31.2
Q ss_pred CccEEEECCchHHHHHHHHHHHCC-CcEEEEcCCCC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNG-VETFLIERKLD 84 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g-~~v~v~E~~~~ 84 (462)
..+|+|||+|-.|.++|..++..| .+++++|.+..
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~ 40 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKG 40 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCc
Confidence 458999999999999999999998 58999998764
No 489
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=89.59 E-value=0.32 Score=45.35 Aligned_cols=35 Identities=26% Similarity=0.454 Sum_probs=32.2
Q ss_pred CCccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 49 RNLRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 49 ~~~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
.+-+|+|+|||.+|.-+|..+...|-+|+|+|.+.
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~ 201 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNI 201 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCH
Confidence 34689999999999999999999999999999986
No 490
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=89.58 E-value=5.1 Score=41.94 Aligned_cols=34 Identities=38% Similarity=0.502 Sum_probs=27.7
Q ss_pred CccEEEECCchHHHHHHHHHHHCC-CcEEEEcCCC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNG-VETFLIERKL 83 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g-~~v~v~E~~~ 83 (462)
.-.|+|||||..|.-.|..+.+.| -+|+|+.+.+
T Consensus 267 gk~v~ViGgg~~a~d~a~~a~~lga~~v~ii~r~~ 301 (564)
T PRK12771 267 GKRVVVIGGGNTAMDAARTARRLGAEEVTIVYRRT 301 (564)
T ss_pred CCCEEEECChHHHHHHHHHHHHcCCCEEEEEEecC
Confidence 347999999999999998888888 5677777654
No 491
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=89.58 E-value=0.5 Score=44.59 Aligned_cols=33 Identities=33% Similarity=0.443 Sum_probs=30.4
Q ss_pred ccEEEECCchHHHHHHHHHHHCCC-cEEEEcCCC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGV-ETFLIERKL 83 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~-~v~v~E~~~ 83 (462)
.+|+|+|+|-+|.++|..|++.|. +++|++|..
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 479999999999999999999998 799999875
No 492
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=89.55 E-value=0.56 Score=42.95 Aligned_cols=36 Identities=19% Similarity=0.366 Sum_probs=30.5
Q ss_pred CCCccEEEECCchHHHHHHHHHHHCC-----------CcEEEEcCCC
Q 012488 48 NRNLRVAVIGGGPAGGAAAETLAKNG-----------VETFLIERKL 83 (462)
Q Consensus 48 ~~~~dVvIVGgG~aGl~~A~~L~~~g-----------~~v~v~E~~~ 83 (462)
.++.+|+|||+|-.|+..+..|++.| .+++|+|.+.
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~ 55 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDT 55 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCE
Confidence 45679999999999999999999974 2788888765
No 493
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=89.46 E-value=0.57 Score=42.54 Aligned_cols=34 Identities=26% Similarity=0.454 Sum_probs=30.4
Q ss_pred CccEEEECCchHHHHHHHHHHHCCCc---EEEEcCCC
Q 012488 50 NLRVAVIGGGPAGGAAAETLAKNGVE---TFLIERKL 83 (462)
Q Consensus 50 ~~dVvIVGgG~aGl~~A~~L~~~g~~---v~v~E~~~ 83 (462)
..+|+|+|+|-+|...|..|.+.|.+ +.|++|..
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 35799999999999999999999985 88999874
No 494
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=89.41 E-value=0.46 Score=46.40 Aligned_cols=32 Identities=28% Similarity=0.426 Sum_probs=26.8
Q ss_pred cEEEECCchHHHHHHHHHHHCCC-cEEEEcCCC
Q 012488 52 RVAVIGGGPAGGAAAETLAKNGV-ETFLIERKL 83 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g~-~v~v~E~~~ 83 (462)
.|+|+|+||.||.++..++..|. +|+++|+.+
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~ 203 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP 203 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH
Confidence 69999999999999888888886 566667765
No 495
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=89.36 E-value=0.6 Score=46.77 Aligned_cols=33 Identities=27% Similarity=0.342 Sum_probs=29.3
Q ss_pred ccEEEECCchHHHHHHHHHHHC----CCcEEEEcCCC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKN----GVETFLIERKL 83 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~----g~~v~v~E~~~ 83 (462)
.++=|||+|+|+|++|..|-|- |-+++|+|+.+
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~ 39 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELD 39 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCC
Confidence 3678999999999999999875 67999999987
No 496
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=89.31 E-value=0.67 Score=41.25 Aligned_cols=33 Identities=30% Similarity=0.323 Sum_probs=30.6
Q ss_pred ccEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 51 LRVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 51 ~dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
..|+|+|.|-.|..+|..|.+.|.+|+++|++.
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 479999999999999999999999999998764
No 497
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=89.26 E-value=0.46 Score=44.92 Aligned_cols=32 Identities=34% Similarity=0.486 Sum_probs=30.3
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 52 RVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
.|.|||||.-|...|..++..|++|+++|.++
T Consensus 5 kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~ 36 (307)
T COG1250 5 KVAVIGAGVMGAGIAAVFALAGYDVVLKDISP 36 (307)
T ss_pred EEEEEcccchhHHHHHHHhhcCCceEEEeCCH
Confidence 69999999999999999999889999999885
No 498
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=89.25 E-value=0.45 Score=45.28 Aligned_cols=32 Identities=25% Similarity=0.387 Sum_probs=30.5
Q ss_pred cEEEECCchHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 52 RVAVIGGGPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 52 dVvIVGgG~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
+|.|||.|-.|..+|..|++.|++|.++++++
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~ 33 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQ 33 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCH
Confidence 69999999999999999999999999999876
No 499
>PLN03000 amine oxidase
Probab=89.17 E-value=39 Score=37.14 Aligned_cols=39 Identities=21% Similarity=0.269 Sum_probs=31.2
Q ss_pred CCCEEEEccCCcCcccCCcccHHHHHHHHHHHHHHHHHHhhc
Q 012488 320 SGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIIEGSEN 361 (462)
Q Consensus 320 ~~~v~liGDAAh~~~P~~G~G~~~a~~da~~la~~l~~a~~~ 361 (462)
.||+++.|++.+...|-+-+| |++++..+|..|.+.+..
T Consensus 587 ~GRIfFAGEaTs~~~~GTVhG---AieSGlRAA~eIl~~l~~ 625 (881)
T PLN03000 587 DGRLFFAGEATTRRYPATMHG---AFVTGLREAANMAQSAKA 625 (881)
T ss_pred CCcEEEeehHHhCCCCeeHHH---HHHHHHHHHHHHHHHhhh
Confidence 479999999988877755444 899999899888887654
No 500
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=89.16 E-value=0.68 Score=40.94 Aligned_cols=34 Identities=41% Similarity=0.699 Sum_probs=30.2
Q ss_pred CccEEEECC-chHHHHHHHHHHHCCCcEEEEcCCC
Q 012488 50 NLRVAVIGG-GPAGGAAAETLAKNGVETFLIERKL 83 (462)
Q Consensus 50 ~~dVvIVGg-G~aGl~~A~~L~~~g~~v~v~E~~~ 83 (462)
...|+|+|| |..|..+|..|++.|.+|+++.|+.
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~ 62 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDL 62 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 347999997 9999999999999999999998764
Done!