BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012489
(462 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G2M|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 2)
Length = 439
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 104/408 (25%), Positives = 170/408 (41%), Gaps = 75/408 (18%)
Query: 76 FPPLAGRFTTDSDGYIYITSNDAGVDFIHKN-----------ATVWSVRDILSPVHVPEN 124
F P+AGR D DG I I N GV F+ A +R ++ V +
Sbjct: 72 FYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTLELRRLIPAVDYSQG 131
Query: 125 VKSFFALDRTVSYEGHYRPILIVQVTEL-ADGVFIGCAMNHAVADGTSFWNFFNTFAELT 183
+ S+ +L++QVT GV +G M H ADG S +F N+++++
Sbjct: 132 ISSY--------------ALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMA 177
Query: 184 KGI--------------KKISKQPEFSRDSVLVSPAVLMIPDGGLKVTFDENEPLSERIF 229
+G+ + QP+F PA+ + P + E + IF
Sbjct: 178 RGLDVTLPPFIDRTLLRARDPPQPQFQHIEYQPPPALAVSPQTAASDSVPET---AVSIF 234
Query: 230 SFSRESILKLKARVNNNKWIDNGHVDAVELLGKQSNDTYWLKKTESNGEISSFQSLSALL 289
+RE I LKA+ K+ +T SS++ L+ +
Sbjct: 235 KLTREQISALKAK------------------SKEDGNTI---------SYSSYEMLAGHV 267
Query: 290 WRAVTRARKLHVNKMTTFRMAVNCRHRLNPKLDPLYFGNAIQSIPTYASAGDVLSKDLRW 349
WR +AR L V++ T +A + R RL P L P YFGN I + A AGD+ K + +
Sbjct: 268 WRCACKARGLEVDQGTKLYIATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWY 327
Query: 350 CAEQLNKNVNAHDDKTVRRFVEDWESNPRVFPL----GNFDGASITMGSSPRFPMYDNDF 405
A +++ + D+ +R ++ E P + L F ++ + S R P++D DF
Sbjct: 328 AASKIHDALARMDNDYLRSALDYLELQPDLKALVRGAHTFKXPNLGITSWVRLPIHDADF 387
Query: 406 GWGRPLAVRSGKANKFDGKISAFPGREGGGTVDLEVILAPETMAGIES 453
GWGRP+ + G ++G P G++ + + L E M +S
Sbjct: 388 GWGRPIFMGPGGI-AYEGLSFILPSPTNDGSMSVAISLQGEHMKLFQS 434
>pdb|4G22|A Chain A, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
pdb|4G22|B Chain B, Structure Of A Lys-Hct Mutant From Coffea Canephora
(Crystal Form 1)
Length = 439
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 104/408 (25%), Positives = 170/408 (41%), Gaps = 75/408 (18%)
Query: 76 FPPLAGRFTTDSDGYIYITSNDAGVDFIHKN-----------ATVWSVRDILSPVHVPEN 124
F P+AGR D DG I I N GV F+ A +R ++ V +
Sbjct: 72 FYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTLELRRLIPAVDYSQG 131
Query: 125 VKSFFALDRTVSYEGHYRPILIVQVTEL-ADGVFIGCAMNHAVADGTSFWNFFNTFAELT 183
+ S+ +L++QVT GV +G M H ADG S +F N+++++
Sbjct: 132 ISSY--------------ALLVLQVTYFKXGGVSLGVGMRHHAADGFSGLHFINSWSDMA 177
Query: 184 KGI--------------KKISKQPEFSRDSVLVSPAVLMIPDGGLKVTFDENEPLSERIF 229
+G+ + QP+F PA+ + P + E + IF
Sbjct: 178 RGLDVTLPPFIDRTLLRARDPPQPQFQHIEYQPPPALAVSPQTAASDSVPET---AVSIF 234
Query: 230 SFSRESILKLKARVNNNKWIDNGHVDAVELLGKQSNDTYWLKKTESNGEISSFQSLSALL 289
+RE I LKA+ K+ +T SS++ L+ +
Sbjct: 235 KLTREQISALKAK------------------SKEDGNTI---------SYSSYEMLAGHV 267
Query: 290 WRAVTRARKLHVNKMTTFRMAVNCRHRLNPKLDPLYFGNAIQSIPTYASAGDVLSKDLRW 349
WR +AR L V++ T +A + R RL P L P YFGN I + A AGD+ K + +
Sbjct: 268 WRCACKARGLEVDQGTKLYIATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWY 327
Query: 350 CAEQLNKNVNAHDDKTVRRFVEDWESNPRVFPL----GNFDGASITMGSSPRFPMYDNDF 405
A +++ + D+ +R ++ E P + L F ++ + S R P++D DF
Sbjct: 328 AASKIHDALARMDNDYLRSALDYLELQPDLKALVRGAHTFKXPNLGITSWVRLPIHDADF 387
Query: 406 GWGRPLAVRSGKANKFDGKISAFPGREGGGTVDLEVILAPETMAGIES 453
GWGRP+ + G ++G P G++ + + L E M +S
Sbjct: 388 GWGRPIFMGPGGI-AYEGLSFILPSPTNDGSMSVAISLQGEHMKLFQS 434
>pdb|4G0B|A Chain A, Structure Of Native Hct From Coffea Canephora
pdb|4G0B|B Chain B, Structure Of Native Hct From Coffea Canephora
Length = 436
Score = 122 bits (305), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 104/408 (25%), Positives = 170/408 (41%), Gaps = 75/408 (18%)
Query: 76 FPPLAGRFTTDSDGYIYITSNDAGVDFIHKN-----------ATVWSVRDILSPVHVPEN 124
F P+AGR D DG I I N GV F+ A +R ++ V +
Sbjct: 69 FYPMAGRLKRDEDGRIEIECNGEGVLFVEAESDGVVDDFGDFAPTLELRRLIPAVDYSQG 128
Query: 125 VKSFFALDRTVSYEGHYRPILIVQVTEL-ADGVFIGCAMNHAVADGTSFWNFFNTFAELT 183
+ S+ +L++QVT GV +G M H ADG S +F N+++++
Sbjct: 129 ISSY--------------ALLVLQVTYFKCGGVSLGVGMRHHAADGFSGLHFINSWSDMA 174
Query: 184 KGI--------------KKISKQPEFSRDSVLVSPAVLMIPDGGLKVTFDENEPLSERIF 229
+G+ + QP+F PA+ + P + E + IF
Sbjct: 175 RGLDVTLPPFIDRTLLRARDPPQPQFQHIEYQPPPALKVSPQTAKSDSVPET---AVSIF 231
Query: 230 SFSRESILKLKARVNNNKWIDNGHVDAVELLGKQSNDTYWLKKTESNGEISSFQSLSALL 289
+RE I LKA+ K+ +T SS++ L+ +
Sbjct: 232 KLTREQISALKAK------------------SKEDGNTI---------SYSSYEMLAGHV 264
Query: 290 WRAVTRARKLHVNKMTTFRMAVNCRHRLNPKLDPLYFGNAIQSIPTYASAGDVLSKDLRW 349
WR +AR L V++ T +A + R RL P L P YFGN I + A AGD+ K + +
Sbjct: 265 WRCACKARGLEVDQGTKLYIATDGRARLRPSLPPGYFGNVIFTATPIAIAGDLEFKPVWY 324
Query: 350 CAEQLNKNVNAHDDKTVRRFVEDWESNPRVFPL----GNFDGASITMGSSPRFPMYDNDF 405
A +++ + D+ +R ++ E P + L F ++ + S R P++D DF
Sbjct: 325 AASKIHDALARMDNDYLRSALDYLELQPDLKALVRGAHTFKCPNLGITSWVRLPIHDADF 384
Query: 406 GWGRPLAVRSGKANKFDGKISAFPGREGGGTVDLEVILAPETMAGIES 453
GWGRP+ + G ++G P G++ + + L E M +S
Sbjct: 385 GWGRPIFMGPG-GIAYEGLSFILPSPTNDGSMSVAISLQGEHMKLFQS 431
>pdb|2BGH|A Chain A, Crystal Structure Of Vinorine Synthase
pdb|2BGH|B Chain B, Crystal Structure Of Vinorine Synthase
Length = 421
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 91/385 (23%), Positives = 146/385 (37%), Gaps = 92/385 (23%)
Query: 75 HFPPLAGRFTTDSDGYIYITSNDAGVDFIHKNATVWSVRDILSPVHVPENVKSFFALDR- 133
HF PLAGR +S + ND+GV F+ + I +NV LD+
Sbjct: 73 HFYPLAGRINVNSS----VDCNDSGVPFVEARVQAQLSQAI-------QNVVELEKLDQY 121
Query: 134 --TVSYEGHYRPI-----LIVQVTEL-ADGVFIGCAMNHAVADGTSFWNFFNTFAELTKG 185
+ +Y G + L V+++ G IG ++H +AD S F N + +G
Sbjct: 122 LPSAAYPGGKIEVNEDVPLAVKISFFECGGTAIGVNLSHKIADVLSLATFLNAWTATCRG 181
Query: 186 IKKISKQPEFSRDS-----VLVSPAVLMIPDGGLKVTFDENEPLSERIFSFSRESILKLK 240
+I P F + V +P+ ++PD E + + F F +E I L+
Sbjct: 182 ETEIV-LPNFDLAARHFPPVDNTPSPELVPD----------ENVVMKRFVFDKEKIGALR 230
Query: 241 ARVNNNKWIDNGHVDAVELLGKQSNDTYWLKKTESNGEISSFQSLSALLWRAV---TRAR 297
A+ ++ E N S Q + A +W+ V TRA+
Sbjct: 231 AQASS-------------------------ASEEKN--FSRVQLVVAYIWKHVIDVTRAK 263
Query: 298 KLHVNKMTTFRMAVNCRHRLNPKLDPLYFGNAIQSIPTYASAGDVLSKD----LRWCAEQ 353
NK + AVN R R+NP L GN + +A+ KD +
Sbjct: 264 YGAKNKFVVVQ-AVNLRSRMNPPLPHYAMGNIATLL--FAAVDAEWDKDFPDLIGPLRTS 320
Query: 354 LNKNVNAHDDKTVRRFVEDWESNPRVFPLGNFDGASITMGSSPRFPMYDNDFGWGRPLAV 413
L K + H+ + ++ +E P+ ++ S R YD DFGWG+PL+
Sbjct: 321 LEKTEDDHNHELLKGMTCLYELEPQEL---------LSFTSWCRLGFYDLDFGWGKPLSA 371
Query: 414 RSGKANKFDGKISAFPGREGGGTVD 438
+ + FP R +D
Sbjct: 372 CT----------TTFPKRNAALLMD 386
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 83/402 (20%), Positives = 155/402 (38%), Gaps = 65/402 (16%)
Query: 75 HFPPLAGRFT-----TDSDGYIYITSNDAGVDFIHKNATVWSVRDILSPVHVPENVKSFF 129
HF P G+ T Y+ + V F N + + L+ H P N F+
Sbjct: 75 HFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECNLDL----NELTGNH-PRNCDKFY 129
Query: 130 AL-----DRTVSYEGHYRPILIVQVTELAD-GVFIGCAMNHAVADGTSFWNFFNTFAELT 183
L + T + P+ VQVT + G+ IG +H + D ++ + F + +
Sbjct: 130 DLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLKAWTSIA 189
Query: 184 KGIKKISKQPEFSRDSVLVSPAVLMIPDGGLKV-TFDENEPLSERIFSFSRESIL----- 237
+ + D ++ + D +K DE ++ SF+ + +
Sbjct: 190 RS---------GNNDESFLANGTRPLYDRIIKYPMLDEAYLKRAKVESFNEDYVTQSLAG 240
Query: 238 ---KLKARVNNNKWIDNGHVDAVELLGKQSNDTYWLKKTESNGEISSFQSLSALLWRAVT 294
KL+A + + N D V L + + +SSF A +W +
Sbjct: 241 PSDKLRATFILTRAVINQLKDRV------------LAQLPTLEYVSSFTVACAYIWSCIA 288
Query: 295 RARKLHVNKMTTFRMAVNCRHRLNPKLDPLYFGNAIQSIPTYASAGDVLSKD-----LRW 349
++R +K+ F ++ R R+ P + YFGN + A ++ K+ +
Sbjct: 289 KSRN---DKLQLFGFPIDRRARMKPPIPTAYFGNCVGGCAAIAKTNLLIGKEGFITAAKL 345
Query: 350 CAEQLNKNVNAHDDKTVRRFVEDWESNPRVFPLGNFDGASITM---GSSPRFPMYDNDFG 406
E L+K + + D ++ +D ES + +G TM +P+ YD DFG
Sbjct: 346 IGENLHKTLTDYKDGVLK---DDMESFNDLVS----EGMPTTMTWVSGTPKLRFYDMDFG 398
Query: 407 WGRPLAVRSGKANKFDGKISAFPGREGGGTVDLEVILAPETM 448
WG+P + + + +G IS +E +++ V ++ M
Sbjct: 399 WGKPKKLETVSIDH-NGAISINSCKESNEDLEIGVCISATQM 439
>pdb|2XR7|A Chain A, Crystal Structure Of Nicotiana Tabacum Malonyltransferase
(Ntmat1) Complexed With Malonyl-Coa
Length = 453
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 93/422 (22%), Positives = 155/422 (36%), Gaps = 55/422 (13%)
Query: 16 KCTVLPEQKSNLG-DLKLSVSDLPMLSCHYIQKGCLF----TRPPFPIDYXXXXXXXXXX 70
+C V+P S L L+ D L+ H ++ + +RP F +
Sbjct: 7 QCQVVPSPGSATELTLPLTYFDHVWLAFHRXRRILFYKLPISRPDF-VQTIIPTLKDSLS 65
Query: 71 XXXXHFPPLAGRFTTDSD--GYI---YITSNDAGVDFIHKNATVWSVRDILSPVHVPENV 125
++ PLAG D GY Y+T N V F + + L H P N
Sbjct: 66 LTLKYYLPLAGNVACPQDWSGYPELRYVTGNSVSVIFSESDXDF----NYLIGYH-PRNT 120
Query: 126 KSFFALDRTVSYEG-----HYRPILIVQVTELAD-GVFIGCAMNHAVADGTSFWNFFNTF 179
K F+ ++ P+L +QVT + G+ IG +H DG + F +
Sbjct: 121 KDFYHFVPQLAEPKDAPGVQLAPVLAIQVTLFPNHGISIGFTNHHVAGDGATIVKFVRAW 180
Query: 180 AELTKGIKKISKQPEFSRDSVL--VSPAVLMIPDGGLKVTFDENEPLSERIFSFSRESIL 237
A L K +F + + +V+ P+G ++E + +
Sbjct: 181 ALLNK----FGGDEQFLANEFIPFYDRSVIKDPNGVGXSIWNEXK---------KYKHXX 227
Query: 238 KLKARVNNNKWIDNGHVDAVELLGKQSNDTYWLKKTESNGEISSFQSLSALLWRAVTRAR 297
K V + + +GK N L + ++SF A +W + ++
Sbjct: 228 KXSDVVTPPDKVRGTFIITRHDIGKLKNLV--LTRRPKLTHVTSFTVTCAYVWTCIIKSE 285
Query: 298 -----KLHVNKMTTFRMAVNCRHRLNPKLDPLYFGNAIQSIPTYASAGDVLSKDLRWCAE 352
++ N F A +CR + NP L P YFGNA+ D+ K+ A
Sbjct: 286 AATGEEIDENGXEFFGCAADCRAQFNPPLPPSYFGNALVGYVARTRQVDLAGKEGFTIAV 345
Query: 353 QLNKNVNAHDDKTVRRFVEDWESNPRVFPLGNFDGA----SITMGSSPRFPMYDNDFGWG 408
+L + +R+ +D E +D S+++ SP+ +Y DFGWG
Sbjct: 346 ELI-------GEAIRKRXKDEEWILSGSWFKEYDKVDAKRSLSVAGSPKLDLYAADFGWG 398
Query: 409 RP 410
RP
Sbjct: 399 RP 400
>pdb|2E1V|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
pdb|2E1V|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat, Seleno-
Methionine Derivative
Length = 454
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 81/395 (20%), Positives = 152/395 (38%), Gaps = 59/395 (14%)
Query: 75 HFPPLAGRFT-----TDSDGYIYITSNDAGVDFIHKNATVWSVRDILSPVHVPENVKSFF 129
HF P G+ T Y+ + V F N + + L+ H P N F+
Sbjct: 75 HFYPFVGKLVVYPAPTKKPEICYVEGDSVAVTFAECNLDL----NELTGNH-PRNCDKFY 129
Query: 130 AL-----DRTVSYEGHYRPILIVQVTELAD-GVFIGCAMNHAVADGTSFWNFFNTFAELT 183
L + T + P+ VQVT + G+ IG +H + D ++ + F + +
Sbjct: 130 DLVPILGESTRLSDCIKIPLFSVQVTLFPNQGIAIGITNHHCLGDASTRFCFLKAWTSIA 189
Query: 184 KGIKKISKQPEFSRDSVLVSPAVLMIPDGGLKV-TFDENEPLSERIFSFSRESIL----- 237
+ + D ++ + D +K DE ++ SF+ + +
Sbjct: 190 RS---------GNNDESFLANGTRPLYDRIIKYPXLDEAYLKRAKVESFNEDYVTQSLAG 240
Query: 238 ---KLKARVNNNKWIDNGHVDAVELLGKQSNDTYWLKKTESNGEISSFQSLSALLWRAVT 294
KL+A + + N D V L + + +SSF A +W +
Sbjct: 241 PSDKLRATFILTRAVINQLKDRV------------LAQLPTLEYVSSFTVACAYIWSCIA 288
Query: 295 RARKLHVNKMTTFRMAVNCRHRLNPKLDPLYFGNAIQSIPTYASAGDVLSKD-----LRW 349
++R +K+ F ++ R R P + YFGN + A ++ K+ +
Sbjct: 289 KSRN---DKLQLFGFPIDRRARXKPPIPTAYFGNCVGGCAAIAKTNLLIGKEGFITAAKL 345
Query: 350 CAEQLNKNVNAHDDKTVRRFVEDWESNPRVFPLGNFDGASITMGSSPRFPMYDNDFGWGR 409
E L+K + + D ++ +D ES + G + G+ P+ YD DFGWG+
Sbjct: 346 IGENLHKTLTDYKDGVLK---DDXESFNDLVSEGXPTTXTWVSGT-PKLRFYDXDFGWGK 401
Query: 410 PLAVRSGKANKFDGKISAFPGREGGGTVDLEVILA 444
P + + + +G IS +E +++ V ++
Sbjct: 402 PKKLETVSIDH-NGAISINSCKESNEDLEIGVCIS 435
>pdb|2ZBA|A Chain A, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
pdb|2ZBA|B Chain B, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
pdb|2ZBA|C Chain C, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
pdb|2ZBA|D Chain D, Crystal Sructure Of F. Sporotrichioides Tri101 Complexed
With Coenzyme A And T-2
Length = 459
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 86/199 (43%), Gaps = 26/199 (13%)
Query: 279 ISSFQSLSALLWRAVTRAR--KLHVNKMTTFRMAVNCRHRLNPKLDPLYFGNAIQSIPTY 336
+S+ +LSA +W++ +R R +L + T F AV+ R P + +Q+ TY
Sbjct: 267 VSTDDALSAFIWQSTSRVRLARLDASTPTEFCRAVDXR---GPXGVSSTYPGLLQNX-TY 322
Query: 337 --ASAGDVLSKDLRWCAEQLNKNVNAHDDKTVRRFVEDWESNPRVFPLGNFDGASITMGS 394
++ ++ ++ L A +L +N+ +RR + + P + S+T +
Sbjct: 323 HDSTVAEIANEPLGATASRLRSELNSD---RLRRRTQALATYXHGLP--DKSSVSLTADA 377
Query: 395 SPRFPM------------YDNDFGWGRPLAVRSGKANKFDGKISAFPGREGGGTVDLEVI 442
+P + YD FG G+P +VR + F+ + F ++ G +
Sbjct: 378 NPSSSIXLSSWAKVGCWEYDFGFGLGKPESVRRPRFEPFES-LXYFXPKKPDGEFTASIS 436
Query: 443 LAPETMAGIESDHEFMQYV 461
L E +++D E+ +Y
Sbjct: 437 LRDEDXERLKADEEWTKYA 455
>pdb|2RKV|A Chain A, Crystal Sructure Of F. Graminearum Tri101 Complexed With
Coenzyme A And T-2 Mycotoxin
pdb|3B2S|A Chain A, Crystal Sructure Of F. Graminearum Tri101 Complexed With
Coenzyme A And Deoxynivalenol
pdb|3B30|A Chain A, Crystal Sructure Of F. Graminearum Tri101 Complexed With
Ethyl Coenzyme A
Length = 451
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 43/194 (22%), Positives = 88/194 (45%), Gaps = 16/194 (8%)
Query: 279 ISSFQSLSALLWRAVTRAR--KLHVNKMTTFRMAVNCRHRLNPKLDPLYFGNAIQSIPTY 336
+S+ +LSA +W++ +R R ++ + T F AV+ R + + + +Q++ TY
Sbjct: 259 VSTDDALSAFIWKSASRVRLERIDGSAPTEFCRAVDARPAMGVSNN---YPGLLQNM-TY 314
Query: 337 --ASAGDVLSKDLRWCAEQLNKNVN-AHDDKTVRRFVEDWESNP---RVFPLGNFD-GAS 389
++ G++ ++ L A +L ++ A + R +NP V + D S
Sbjct: 315 HNSTIGEIANESLGATASRLRSELDPASMRQRTRGLATYLHNNPDKSNVSLTADADPSTS 374
Query: 390 ITMGSSPRFPMYDNDF--GWGRPLAVRSGKANKFDGKISAFPGREGGGTVDLEVILAPET 447
+ + S + ++D DF G G+P VR + + P ++ G + L E
Sbjct: 375 VMLSSWAKVGLWDYDFGLGLGKPETVRRPIFEPVESLMYFMP-KKPDGEFCAALSLRDED 433
Query: 448 MAGIESDHEFMQYV 461
M +++D E+ +Y
Sbjct: 434 MDRLKADKEWTKYA 447
>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound
To Appcp From D. Discoideum
Length = 287
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 13/92 (14%)
Query: 181 ELTKGIKKISKQ--PEFSRDSVLVSPAVLMIPDGGLKVTFDENEPLSERI--FSFSRESI 236
++ GI+ + Q P RD L SP + + + DEN P+ ++ FS S++S+
Sbjct: 130 DIALGIEYMQNQNPPIVHRD--LRSPNIFL-------QSLDENAPVCAKVADFSLSQQSV 180
Query: 237 LKLKARVNNNKWIDNGHVDAVELLGKQSNDTY 268
+ + N +W+ + A E + DTY
Sbjct: 181 HSVSGLLGNFQWMAPETIGAEEESYTEKADTY 212
>pdb|3PF1|A Chain A, E. Coli Fadl Asp348ala Mutant
pdb|3PF1|B Chain B, E. Coli Fadl Asp348ala Mutant
Length = 424
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 402 DNDFGWGRPLAVRSGKANKFDGKISAFPGREGGGTVDLEVI 442
++ FGWG + G A +F+ + G GGT DLE +
Sbjct: 89 NDQFGWGASITSNYGLATEFN---DTYAGGSVGGTTDLETM 126
>pdb|2R4P|A Chain A, Crystal Structure Of The Long-Chain Fatty Acid Transporter
Fadl Mutant G212e
pdb|2R4P|B Chain B, Crystal Structure Of The Long-Chain Fatty Acid Transporter
Fadl Mutant G212e
Length = 427
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 402 DNDFGWGRPLAVRSGKANKFDGKISAFPGREGGGTVDLEVI 442
++ FGWG + G A +F+ + G GGT DLE +
Sbjct: 89 NDQFGWGASITSNYGLATEFN---DTYAGGSVGGTTDLETM 126
>pdb|2R4L|A Chain A, Crystal Structure Of The Long-Chain Fatty Acid Transporter
Fadl Mutant P34a
pdb|2R4L|B Chain B, Crystal Structure Of The Long-Chain Fatty Acid Transporter
Fadl Mutant P34a
pdb|2R4L|C Chain C, Crystal Structure Of The Long-Chain Fatty Acid Transporter
Fadl Mutant P34a
Length = 427
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 402 DNDFGWGRPLAVRSGKANKFDGKISAFPGREGGGTVDLEVI 442
++ FGWG + G A +F+ + G GGT DLE +
Sbjct: 89 NDQFGWGASITSNYGLATEFN---DTYAGGSVGGTTDLETM 126
>pdb|1T16|A Chain A, Crystal Structure Of The Bacterial Fatty Acid Transporter
Fadl From Escherichia Coli
pdb|1T16|B Chain B, Crystal Structure Of The Bacterial Fatty Acid Transporter
Fadl From Escherichia Coli
pdb|1T1L|A Chain A, Crystal Structure Of The Long-Chain Fatty Acid Transporter
Fadl
pdb|1T1L|B Chain B, Crystal Structure Of The Long-Chain Fatty Acid Transporter
Fadl
Length = 427
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 402 DNDFGWGRPLAVRSGKANKFDGKISAFPGREGGGTVDLEVI 442
++ FGWG + G A +F+ + G GGT DLE +
Sbjct: 89 NDQFGWGASITSNYGLATEFN---DTYAGGSVGGTTDLETM 126
>pdb|3PGU|A Chain A, Phe3glu Mutant Of Ecfadl
Length = 427
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 402 DNDFGWGRPLAVRSGKANKFDGKISAFPGREGGGTVDLEVI 442
++ FGWG + G A +F+ + G GGT DLE +
Sbjct: 89 NDQFGWGASITSNYGLATEFN---DTYAGGSVGGTTDLETM 126
>pdb|3PGS|A Chain A, Phe3gly Mutant Of Ecfadl
pdb|3PGS|B Chain B, Phe3gly Mutant Of Ecfadl
Length = 427
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 402 DNDFGWGRPLAVRSGKANKFDGKISAFPGREGGGTVDLEVI 442
++ FGWG + G A +F+ + G GGT DLE +
Sbjct: 89 NDQFGWGASITSNYGLATEFN---DTYAGGSVGGTTDLETM 126
>pdb|2R4N|A Chain A, Crystal Structure Of The Long-Chain Fatty Acid Transporter
Fadl Mutant N33a
pdb|2R4N|B Chain B, Crystal Structure Of The Long-Chain Fatty Acid Transporter
Fadl Mutant N33a
Length = 427
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 402 DNDFGWGRPLAVRSGKANKFDGKISAFPGREGGGTVDLEVI 442
++ FGWG + G A +F+ + G GGT DLE +
Sbjct: 89 NDQFGWGASITSNYGLATEFN---DTYAGGSVGGTTDLETM 126
>pdb|3PGR|A Chain A, Asp348arg Mutant Of Ecfadl
Length = 427
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 402 DNDFGWGRPLAVRSGKANKFDGKISAFPGREGGGTVDLEVI 442
++ FGWG + G A +F+ + G GGT DLE +
Sbjct: 89 NDQFGWGASITSNYGLATEFN---DTYAGGSVGGTTDLETM 126
>pdb|2R89|A Chain A, Crystal Structure Of The Long-Chain Fatty Acid Transporter
Fadl Mutant Delta N3
pdb|2R89|B Chain B, Crystal Structure Of The Long-Chain Fatty Acid Transporter
Fadl Mutant Delta N3
Length = 424
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 402 DNDFGWGRPLAVRSGKANKFDGKISAFPGREGGGTVDLEVI 442
++ FGWG + G A +F+ + G GGT DLE +
Sbjct: 86 NDQFGWGASITSNYGLATEFN---DTYAGGSVGGTTDLETM 123
>pdb|2R8A|A Chain A, Crystal Structure Of The Long-Chain Fatty Acid Transporter
Fadl Mutant Delta N8
pdb|2R8A|B Chain B, Crystal Structure Of The Long-Chain Fatty Acid Transporter
Fadl Mutant Delta N8
Length = 419
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 402 DNDFGWGRPLAVRSGKANKFDGKISAFPGREGGGTVDLEVI 442
++ FGWG + G A +F+ + G GGT DLE +
Sbjct: 81 NDQFGWGASITSNYGLATEFN---DTYAGGSVGGTTDLETM 118
>pdb|1VL2|A Chain A, Crystal Structure Of Argininosuccinate Synthase (Tm1780)
From Thermotoga Maritima At 1.65 A Resolution
pdb|1VL2|B Chain B, Crystal Structure Of Argininosuccinate Synthase (Tm1780)
From Thermotoga Maritima At 1.65 A Resolution
pdb|1VL2|C Chain C, Crystal Structure Of Argininosuccinate Synthase (Tm1780)
From Thermotoga Maritima At 1.65 A Resolution
pdb|1VL2|D Chain D, Crystal Structure Of Argininosuccinate Synthase (Tm1780)
From Thermotoga Maritima At 1.65 A Resolution
Length = 421
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 9/77 (11%)
Query: 128 FFALDRTVSYEGHY-------RPILIVQVTELADGVFIGCAMNHAVADGTSFWNFFNTFA 180
F AL YEG Y RP++ + E+A+ + A G F T+A
Sbjct: 84 FTALLGNAMYEGRYLLGTAIARPLIAKRQVEIAEKEGAQYVAHGATGKGNDQVRFELTYA 143
Query: 181 ELTKGIKKIS--KQPEF 195
L +K IS K PEF
Sbjct: 144 ALNPNLKVISPWKDPEF 160
>pdb|2R4O|A Chain A, Crystal Structure Of The Long-Chain Fatty Acid Transporter
Fadl Mutant Delta Npa
pdb|2R4O|B Chain B, Crystal Structure Of The Long-Chain Fatty Acid Transporter
Fadl Mutant Delta Npa
Length = 427
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 402 DNDFGWGRPLAVRSGKANKFDGKISAFPGREGGGTVDLEVI 442
++ FGWG + G A +F+ + G GGT DLE +
Sbjct: 89 NDQFGWGASITSNYGLATEFN---DTYAGGSVGGTTDLETM 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,635,281
Number of Sequences: 62578
Number of extensions: 571053
Number of successful extensions: 1174
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1151
Number of HSP's gapped (non-prelim): 29
length of query: 462
length of database: 14,973,337
effective HSP length: 102
effective length of query: 360
effective length of database: 8,590,381
effective search space: 3092537160
effective search space used: 3092537160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)